Citrus Sinensis ID: 013521
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 441 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZQI7 | 456 | Aminotransferase ALD1 OS= | yes | no | 0.981 | 0.949 | 0.641 | 1e-172 | |
| Q93ZN9 | 461 | LL-diaminopimelate aminot | no | no | 0.913 | 0.874 | 0.697 | 1e-165 | |
| Q10MQ2 | 464 | Probable LL-diaminopimela | yes | no | 0.913 | 0.868 | 0.702 | 1e-164 | |
| Q6VMN7 | 440 | Aminotransferase ALD1 hom | no | no | 0.959 | 0.961 | 0.638 | 1e-152 | |
| Q6MDE0 | 411 | LL-diaminopimelate aminot | yes | no | 0.909 | 0.975 | 0.548 | 1e-132 | |
| Q72NJ3 | 408 | LL-diaminopimelate aminot | yes | no | 0.897 | 0.970 | 0.458 | 9e-96 | |
| Q8F814 | 408 | LL-diaminopimelate aminot | yes | no | 0.897 | 0.970 | 0.453 | 2e-95 | |
| Q74GT3 | 410 | LL-diaminopimelate aminot | yes | no | 0.886 | 0.953 | 0.466 | 3e-95 | |
| Q39Z65 | 410 | LL-diaminopimelate aminot | yes | no | 0.900 | 0.968 | 0.461 | 5e-95 | |
| B7KL61 | 411 | LL-diaminopimelate aminot | yes | no | 0.891 | 0.956 | 0.468 | 7e-95 |
| >sp|Q9ZQI7|ALD1_ARATH Aminotransferase ALD1 OS=Arabidopsis thaliana GN=ALD1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 605 bits (1561), Expect = e-172, Method: Compositional matrix adjust.
Identities = 284/443 (64%), Positives = 353/443 (79%), Gaps = 10/443 (2%)
Query: 1 MYVDQVHPKCSTTPL--KATVPFTMDFFLSSRWPVPRHCTEVSRNVNMESLQSGYLFPEI 58
M+ P CS+ KA++ F M S T++ RNVN+E L++ YLFPEI
Sbjct: 5 MFFSSASPLCSSPSKIPKASLDFEMKKLGGS--------TKLVRNVNLEKLKNNYLFPEI 56
Query: 59 SMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMA 118
+ RE EHI KHP+ +LI LG GDTT+PIP+ ITS M+ A LSTV+GY+GYG EQGN
Sbjct: 57 NRRELEHIEKHPNVQLISLGTGDTTEPIPEQITSHMSNFAHGLSTVEGYRGYGLEQGNKT 116
Query: 119 LRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIV 178
LR AIA+ FY+D+ ++ +E+F+SDGAQSDISRLQ+LLGSNVT+AVQDP+FPAYID+SVI+
Sbjct: 117 LRKAIAETFYRDLHVKSNEVFVSDGAQSDISRLQLLLGSNVTIAVQDPTFPAYIDSSVII 176
Query: 179 GQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKK 238
GQ G F ++T KY+N+VYM C P N+FFPDL+ T RTD+IFFCSPNNPTG+ A+ +QL +
Sbjct: 177 GQTGHFHEKTKKYQNVVYMPCGPNNSFFPDLAMTPRTDVIFFCSPNNPTGYVASRKQLHQ 236
Query: 239 LVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298
LV+FAK NGSII++DSAYAA+I D SPRSIYEIPGAREVAIE+SSFSKFAGFTGVRLGW+
Sbjct: 237 LVDFAKTNGSIIIFDSAYAAFIEDGSPRSIYEIPGAREVAIEVSSFSKFAGFTGVRLGWS 296
Query: 299 VVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENA 358
++P+EL YSNG+P+I DF+RIV T FNGASNI QAGGLACLS G + +R+V +YYKEN
Sbjct: 297 IIPDELLYSNGFPIINDFHRIVTTSFNGASNIAQAGGLACLSSGGLKEIRSVNNYYKENR 356
Query: 359 KIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEH 418
KI++D SLGLKV GG NAPY+WV F GS SWDVF EILE THI+T+PGSGFGPGG E+
Sbjct: 357 KILMDTLVSLGLKVYGGVNAPYLWVHFKGSKSWDVFNEILENTHIITVPGSGFGPGGEEY 416
Query: 419 IRVSAFGHREYISEACRRLKNFL 441
+R+S FG R++I EA +RL+NF
Sbjct: 417 LRISGFGRRDHIVEASKRLQNFF 439
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Aminotransferase involved in local and systemic acquired resistance (SAR) to the bacterial pathogen P.syringae. Required for salicylic acid (SA) and camalexin accumulation upon pathogen infection. Possesses aminotransferase activity in vitro and may generate amino-acid-derived defense signals in vivo. May be involved in ethylene-induced senescence signaling. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: - |
| >sp|Q93ZN9|DAPAT_ARATH LL-diaminopimelate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=DAP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1499), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/403 (69%), Positives = 332/403 (82%)
Query: 38 TEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEH 97
T+VSRN NM LQ+GYLFPEI+ R S H+ K+PDA++I LGIGDTT+PIP++ITSAMA+
Sbjct: 57 TKVSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKK 116
Query: 98 AFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGS 157
A LST++GY GYGAEQG LR AIA FY +GI D++F+SDGA+ DISRLQ++ GS
Sbjct: 117 AHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRLQVMFGS 176
Query: 158 NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDI 217
NVT+AVQDPS+PAY+D+SVI+GQ G+F + KY NI YM C PEN FFPDLST RTDI
Sbjct: 177 NVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDI 236
Query: 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV 277
IFFCSPNNPTG AAT +QL +LVEFAK NGSIIVYDSAYA Y++D +PRSI+EIPGA EV
Sbjct: 237 IFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEV 296
Query: 278 AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLA 337
A+E +SFSK+AGFTGVRLGWTV+P++L YS+G+PV KDFNRI+CTCFNGASNI QAG LA
Sbjct: 297 AMETASFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALA 356
Query: 338 CLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEI 397
CL+P+G +A+ VI +YKEN II+D F SLG V GGKNAPYVWV FP SSWDVFAEI
Sbjct: 357 CLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEI 416
Query: 398 LEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440
LEKTH++T PGSGFGPGG +RVSAFGHRE I EACRR K
Sbjct: 417 LEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQL 459
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Required for lysine biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Not active with meso-diaminopimelate, lysine or ornithine as substrates. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|Q10MQ2|DAPAT_ORYSJ Probable LL-diaminopimelate aminotransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=AGD2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 579 bits (1492), Expect = e-164, Method: Compositional matrix adjust.
Identities = 283/403 (70%), Positives = 330/403 (81%)
Query: 38 TEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEH 97
T+V RN NM LQ+GYLFPEI+ R + H+ K PDA++I LGIGDTT+PIPD+IT+AMA+
Sbjct: 60 TKVPRNANMAKLQAGYLFPEIARRRAAHLLKFPDAKIISLGIGDTTEPIPDVITNAMAKR 119
Query: 98 AFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGS 157
A ALSTV GY GYGAEQG LR AIA +Y D+GIE +IF+SDGA+ DISRLQ+L GS
Sbjct: 120 AHALSTVDGYSGYGAEQGEKKLRAAIAATYYADLGIEETDIFVSDGAKCDISRLQVLFGS 179
Query: 158 NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDI 217
NV +AVQDPS+PAY+D+SVI+GQ G + ++ KY NI YM C PEN FFPDLS+ RTDI
Sbjct: 180 NVKIAVQDPSYPAYVDSSVIMGQTGLYQEDVQKYGNIEYMKCSPENGFFPDLSSVPRTDI 239
Query: 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV 277
IFFCSPNNPTG AA+ QL KLV+FAK NGSIIVYDSAYA YI+D SP+SI+EIPGA+EV
Sbjct: 240 IFFCSPNNPTGAAASRDQLTKLVKFAKDNGSIIVYDSAYAMYISDDSPKSIFEIPGAKEV 299
Query: 278 AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLA 337
AIE +SFSK+AGFTGVRLGWTVVP+EL +S+G+PV KDFNRIVCTCFNGASNI QAGGL
Sbjct: 300 AIETASFSKYAGFTGVRLGWTVVPKELLFSDGHPVAKDFNRIVCTCFNGASNISQAGGLG 359
Query: 338 CLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEI 397
CLSP+G +A+ V+ +YKEN KIIVD F SLG V G KNAPYVWV FPG +SWDVFAEI
Sbjct: 360 CLSPEGLKAMSDVVGFYKENTKIIVDTFTSLGFNVYGAKNAPYVWVHFPGRNSWDVFAEI 419
Query: 398 LEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440
LEK H++T PGSGFGPGG +RVSAFGHRE I EA RRLK
Sbjct: 420 LEKAHVVTTPGSGFGPGGEGFVRVSAFGHRENIIEAARRLKQL 462
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Required for lysine biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|Q6VMN7|ALD1_ORYSJ Aminotransferase ALD1 homolog OS=Oryza sativa subsp. japonica GN=ALD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1387), Expect = e-152, Method: Compositional matrix adjust.
Identities = 275/431 (63%), Positives = 338/431 (78%), Gaps = 8/431 (1%)
Query: 16 KATVPFTMDFFLSSRWPVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLI 75
KA +P +D + PR T V RN NME LQ GYLFPEIS++ EH++K+PDA++I
Sbjct: 12 KAVLP-ALDVAPPVKIGGPRR-TSVLRNPNMEKLQKGYLFPEISIKREEHLKKYPDAKVI 69
Query: 76 RLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG 135
LGIGDTT+PIP I+TSAMAE+A ALST +GY+GYG EQG+ LR IADK Y DMGI+
Sbjct: 70 SLGIGDTTEPIPSIVTSAMAEYALALSTPEGYQGYGPEQGHKNLRKEIADKVYPDMGIKE 129
Query: 136 DEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIV 195
E+FISDGAQ DI+RLQ L G NVT+AVQDP+FP Y+D VI+GQ GK + G+Y I
Sbjct: 130 SEVFISDGAQCDIARLQTLFGPNVTIAVQDPTFPGYVDNGVIMGQTGK-ADDGGRYAGIE 188
Query: 196 YMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYD-- 253
YM C PEN FFPDLS RTD+IFFCSPNNPTGHAA+ +QL++LVE A+ NGSIIV+D
Sbjct: 189 YMRCAPENAFFPDLSRVRRTDVIFFCSPNNPTGHAASREQLRQLVELARRNGSIIVFDSA 248
Query: 254 --SAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYP 311
S ++ + +PRSIYEIPGAREVAIE+SSFSKFAGFTGVRLGW VVP+EL YS+G P
Sbjct: 249 YSSYISSSSSSSTPRSIYEIPGAREVAIEVSSFSKFAGFTGVRLGWAVVPDELLYSDGVP 308
Query: 312 VIKDFNRIVCTCFNGASNIVQAGGLACLS-PDGFQALRTVIDYYKENAKIIVDAFQSLGL 370
V +DF+R+VCTCFNGAS I QAGG+ACLS +G A+ V+ Y+ENA+++V+ F+SLG
Sbjct: 309 VARDFDRVVCTCFNGASGIAQAGGVACLSTEEGRGAVARVVGVYRENARVLVETFRSLGK 368
Query: 371 KVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYI 430
+V+GG +APYVWV+FPG SWDVFAEILEKTH++T+PGSGFGPGG IRVSAF R+ +
Sbjct: 369 EVHGGGDAPYVWVRFPGRRSWDVFAEILEKTHVITVPGSGFGPGGEGFIRVSAFNSRDKV 428
Query: 431 SEACRRLKNFL 441
EAC+RLK+FL
Sbjct: 429 LEACQRLKSFL 439
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Probable aminotransferase that may generate amino-acid-derived defense signals and be involved in resistance to pathogens. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q6MDE0|DAPAT_PARUW LL-diaminopimelate aminotransferase OS=Protochlamydia amoebophila (strain UWE25) GN=dapL PE=1 SV=2 | Back alignment and function description |
|---|
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 221/403 (54%), Positives = 303/403 (75%), Gaps = 2/403 (0%)
Query: 40 VSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAF 99
V RNV++ LQSGYLFPEI+ R++E ++KHP A+LI LGIGDTTQPIP I+ AM A
Sbjct: 2 VKRNVHLTKLQSGYLFPEINRRKNEFLKKHPSAQLINLGIGDTTQPIPLYISEAMQNFAK 61
Query: 100 ALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNV 159
L++ K Y+GYG EQG++ LR AIA+++Y+ I+ E+F+SDG++ D+ RLQ+L GS+
Sbjct: 62 QLASEKTYRGYGTEQGSILLREAIAEQYYQGK-IDPQEVFVSDGSKCDVGRLQILFGSDA 120
Query: 160 TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIF 219
T+AVQ+P++PAY+DT VI GQA F T +Y+ I YM+C PENNFFPDL+ +TD+I+
Sbjct: 121 TIAVQNPTYPAYVDTGVINGQASFFQTSTKQYQRITYMSCLPENNFFPDLANLPKTDLIY 180
Query: 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVA 278
FCSPNNPTG AAT +QL++LV+FAK SII++D+AYA+++ PRSIYEI GA+EVA
Sbjct: 181 FCSPNNPTGSAATNEQLRELVQFAKKRQSIIIFDAAYASFVRSSHIPRSIYEIEGAKEVA 240
Query: 279 IEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLAC 338
IE+ SFSK GFTGVRLGW+VVP++LR+ +G+ V +D+ RIVCT FNGASNI QAGGLA
Sbjct: 241 IEVGSFSKMIGFTGVRLGWSVVPKQLRFEDGHSVQQDWERIVCTFFNGASNIAQAGGLAA 300
Query: 339 LSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEIL 398
L +G QA+ + YY +N+ I+ AF+ G KV GG+N PY+WV FP +SW+ F +L
Sbjct: 301 LQKEGLQAIDELSSYYMKNSNILKKAFEECGYKVYGGENVPYLWVHFPQLTSWEAFEILL 360
Query: 399 EKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+++ ++++PGSGFG G +R SAFG + I+ A R+K+ L
Sbjct: 361 KQSQLVSVPGSGFGSAGEGFLRFSAFGKQSDITVALPRIKHAL 403
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Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Is also able to use meso-diaminopimelate, lysine or ornithine as substrates. Protochlamydia amoebophila (strain UWE25) (taxid: 264201) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|Q72NJ3|DAPAT_LEPIC LL-diaminopimelate aminotransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=dapL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (899), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 186/406 (45%), Positives = 257/406 (63%), Gaps = 10/406 (2%)
Query: 43 NVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALS 102
N N L++GYLFPEIS R + K+P A++IRLGIGD T PI + AM E + +
Sbjct: 5 NENYLKLKAGYLFPEISKRVKIYSEKNPSAKIIRLGIGDVTLPIVPSVVDAMVEASKEMG 64
Query: 103 TVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD--EIFISDGAQSDISRLQMLLGSNVT 160
TV G+ GYG EQG L +IAD Y +GI+ D EIF+SDG++ D +Q + ++
Sbjct: 65 TVGGFHGYGPEQGYSFLLKSIADHDYGSLGIKIDESEIFVSDGSKCDCGNIQEIFSTDSK 124
Query: 161 VAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFF 220
+AV DP +P Y+DT+V+ G+ G+ + G+Y N++YM EN F P++ + DI++
Sbjct: 125 IAVADPVYPVYVDTNVMAGRTGE-IGPDGRYSNLIYMPATKENGFQPEIP-KEKADIVYL 182
Query: 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAI 279
C PNNPTG T + LK VE+AK N SII+YDSAY A+I++P PRSIYE+ GA+EVAI
Sbjct: 183 CYPNNPTGTVTTKESLKAWVEYAKKNNSIILYDSAYEAFISEPGVPRSIYEVEGAKEVAI 242
Query: 280 EISSFSKFAGFTGVRLGWTVVPEEL--RYSNGYPVIKD--FNRIVCTCFNGASNIVQAGG 335
E SFSK AGFTG+R + V+P+EL R +G V + +NR T FNG S + Q G
Sbjct: 243 EFRSFSKTAGFTGLRCAYIVIPKELKGRTRSGEEVSLNSLWNRRHTTKFNGVSYVTQKGA 302
Query: 336 LACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-SSWDVF 394
AC SP G + ++T I YY NA I D + G +V GG NAPY+W++ + SSWD F
Sbjct: 303 EACYSPQGKKEIQTSIAYYMANASKIRDGLKKAGYEVFGGVNAPYIWLKTSDNLSSWDFF 362
Query: 395 AEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440
++L K ++ PGSGFGP G + R+SAFG +E + EA R+ +
Sbjct: 363 DKLLNKAQVVGTPGSGFGPAGEGYFRLSAFGKKEDVEEAIARITSL 408
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Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Is also able to catalyze the reverse reaction in vitro, i.e. the transamination of LL-diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate. Can not use m-DAP, lysine or ornithine as the amino-group donor, when using 2-oxoglutarate as the amino-group acceptor. Can not use pyruvate, indole 3-pyruvate, oxaloacetate or phenyl pyruvate as the amino-group acceptor, when using LL-DAP as the amino-group donor. Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) (taxid: 267671) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|Q8F814|DAPAT_LEPIN LL-diaminopimelate aminotransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=dapL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 349 bits (896), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 184/406 (45%), Positives = 254/406 (62%), Gaps = 10/406 (2%)
Query: 43 NVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALS 102
N N L++GYLFPEIS R + K+P A++IRLGIGD T PI + AM E + +
Sbjct: 5 NENYLKLKAGYLFPEISKRVKIYSEKNPSAKIIRLGIGDVTLPIVPSVVDAMVEASKEMG 64
Query: 103 TVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD--EIFISDGAQSDISRLQMLLGSNVT 160
TV G+ GYG EQG L +IAD Y +GI+ D EIF+SDG++ D +Q + ++
Sbjct: 65 TVGGFHGYGPEQGYSFLLKSIADHDYGSLGIKIDESEIFVSDGSKCDCGNIQEIFSTDSK 124
Query: 161 VAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFF 220
+AV DP +P Y+DT+V+ G+ G+ + G+Y N++YM EN F P++ + DI++
Sbjct: 125 IAVADPVYPVYVDTNVMAGRTGE-IGPDGRYSNLIYMPATKENGFQPEIP-KEKADIVYL 182
Query: 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAI 279
C PNNPTG T + LK VE+AK N SII+YDSAY A+I++P PRSIYE+ GA+EVAI
Sbjct: 183 CYPNNPTGTVTTKESLKAWVEYAKKNNSIILYDSAYEAFISEPGVPRSIYEVEGAKEVAI 242
Query: 280 EISSFSKFAGFTGVRLGWTVVPEEL----RYSNGYPVIKDFNRIVCTCFNGASNIVQAGG 335
E SFSK AGFTG+R + V+P+EL R + +NR T FNG S + Q G
Sbjct: 243 EFRSFSKTAGFTGLRCAYIVIPKELKGKTRSGEEVSLNSLWNRRHTTKFNGVSYVTQKGA 302
Query: 336 LACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-SSWDVF 394
AC SP G + ++T I YY NA I D + G +V GG NAPY+W++ + SSWD F
Sbjct: 303 EACYSPQGKKEIQTSIAYYMANASKIRDGLKKAGYEVFGGVNAPYIWLKTSDNLSSWDFF 362
Query: 395 AEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440
++L K ++ PGSGFGP G + R+SAFG +E + EA R+ +
Sbjct: 363 DKLLNKAQVVGTPGSGFGPAGEGYFRLSAFGKKEDVEEAIARITSL 408
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Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) (taxid: 189518) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|Q74GT3|DAPAT_GEOSL LL-diaminopimelate aminotransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=dapL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 349 bits (895), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 187/401 (46%), Positives = 255/401 (63%), Gaps = 10/401 (2%)
Query: 49 LQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK 108
L++GYLFPEI R E +P A++IRLGIGD T+P+ + A E L+T + +
Sbjct: 11 LKAGYLFPEIGRRVREFAAANPSAKVIRLGIGDVTRPLAPAVIKAFHEAVDDLATTENFA 70
Query: 109 GYGAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISRLQMLLGSNVTVAVQDP 166
GYG EQG L AI +K YK +G++ +E+FISDG++ D + + + + VA+ DP
Sbjct: 71 GYGPEQGYDWLINAIIEKSYKPLGVDLKTEEMFISDGSKCDCANILDIFALDNVVAIGDP 130
Query: 167 SFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNP 226
+P Y DT+V++G+ G+ + G Y+ IVYM C EN F P L T + DII+ C PNNP
Sbjct: 131 VYPVYNDTNVMIGRTGE-ADDKGYYKGIVYMPCTEENGFIPSLP-TEKVDIIYLCFPNNP 188
Query: 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFS 285
TG AT +LKK V++A AN ++I +D+AY A+ITDP+ P SIYEI GA++ AIE SFS
Sbjct: 189 TGTVATKAELKKWVDYAIANDAVIFFDAAYEAFITDPAIPHSIYEIEGAKKCAIEFRSFS 248
Query: 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI----VCTCFNGASNIVQAGGLACLSP 341
K AGFTGVR G VVPEE+ + FN++ T FNGAS VQ A S
Sbjct: 249 KTAGFTGVRCGLVVVPEEVMGTTPTGEKYSFNKLWLRRTTTKFNGASYPVQKAAAAVYSD 308
Query: 342 DGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-SSWDVFAEILEK 400
+G+Q + +IDYY ENA+II + + GL V GG NAPY+W++ PG SSWD F ++L +
Sbjct: 309 EGWQQNKEIIDYYMENARIIREGLAAAGLTVYGGVNAPYIWLKTPGGMSSWDFFDKLLNE 368
Query: 401 THILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+++ PGSGFGP G R+SAFGHRE + EA R+K L
Sbjct: 369 CNVVGTPGSGFGPSGEGFFRLSAFGHRENVIEAVERIKKNL 409
|
Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|Q39Z65|DAPAT_GEOMG LL-diaminopimelate aminotransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dapL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (893), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 188/407 (46%), Positives = 256/407 (62%), Gaps = 10/407 (2%)
Query: 43 NVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALS 102
N N L++GYLFPEI R E +P+A++IRLGIGD T+P+ I A + L+
Sbjct: 5 NDNYLKLKAGYLFPEIGRRVREFSAANPEAKVIRLGIGDVTRPLAPAIIKAFHDAVDDLA 64
Query: 103 TVKGYKGYGAEQGNMALRTAIADKFYKDMGI--EGDEIFISDGAQSDISRLQMLLGSNVT 160
T+ + GYG EQG L AI +K YK +G+ + +E+FISDG++ D + + + +
Sbjct: 65 TIDNFAGYGPEQGYDWLINAIIEKSYKPLGVSLKTEEMFISDGSKCDCANILDIFALDNV 124
Query: 161 VAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFF 220
VA+ DP +P Y DT+V++G+ G E G Y+ IVYM C N F P L T + DII+
Sbjct: 125 VAIGDPVYPVYNDTNVMIGRTGD-ADEKGYYKGIVYMPCTEANGFIPSLP-TEKVDIIYL 182
Query: 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAI 279
C PNNPTG AT +LKK V++A AN ++I +D+AY A+ITDP+ P SIYEI GA++ AI
Sbjct: 183 CFPNNPTGTVATKAELKKWVDYANANDAVIFFDAAYEAFITDPAIPHSIYEIEGAKKCAI 242
Query: 280 EISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI----VCTCFNGASNIVQAGG 335
E SFSK AGFTGVR G VVPEE+ + FN++ T FNGAS VQ
Sbjct: 243 EFRSFSKTAGFTGVRCGLVVVPEEVMGTTPTGEKYSFNKLWLRRTTTKFNGASYPVQKAA 302
Query: 336 LACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-SSWDVF 394
A S +G++ + +IDYY ENA+II + + GL V GG NAPY+W++ PG SSWD F
Sbjct: 303 AAVYSDEGWKQNKEIIDYYMENARIIREGLAAAGLTVYGGVNAPYIWLKTPGGMSSWDFF 362
Query: 395 AEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
++L + +++ PGSGFGP G R+SAFGHRE + EA R+K L
Sbjct: 363 DKLLTECNVVGTPGSGFGPSGEGFFRLSAFGHRENVIEAVERIKKNL 409
|
Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|B7KL61|DAPAT_CYAP7 LL-diaminopimelate aminotransferase OS=Cyanothece sp. (strain PCC 7424) GN=dapL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (892), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 189/403 (46%), Positives = 251/403 (62%), Gaps = 10/403 (2%)
Query: 43 NVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALS 102
N N L++GYLFPEI+ R + HP+A++I+LGIGD T+P+P AM + +
Sbjct: 5 NDNYLKLKAGYLFPEIARRVNAFAEAHPEAKIIKLGIGDVTEPLPQACRQAMIKAVEEMG 64
Query: 103 TVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQSDISRLQMLLGSNVT 160
+KGYG EQG LR IA ++ G I+ EIFISDG++ D + + G N T
Sbjct: 65 DRATFKGYGPEQGYNWLREKIAQNDFQARGCDIDASEIFISDGSKCDTGNILDIFGKNNT 124
Query: 161 VAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFF 220
+AV DP +P Y+DT+V+ G G + G+Y +VY+ NNF P+L + + D+I+
Sbjct: 125 IAVTDPVYPVYVDTNVMAGHTGD-ANDKGEYLGLVYLPMTANNNFTPELP-SQKVDLIYL 182
Query: 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAI 279
C PNNPTG AT + L K V +AK NGSII +D+AY A+ITDPS P SIYEI GAR+ AI
Sbjct: 183 CFPNNPTGATATKENLTKWVNYAKENGSIIFFDAAYEAFITDPSLPHSIYEIEGARDCAI 242
Query: 280 EISSFSKFAGFTGVRLGWTVVPEEL--RYSNGYPV--IKDFNRIVCTCFNGASNIVQAGG 335
E SFSK AGFTG R TVVP+ L + S+G V K +NR T FNG S IVQ G
Sbjct: 243 EFRSFSKNAGFTGTRCALTVVPKTLKAKASDGSEVELWKLWNRRQSTKFNGVSYIVQRGA 302
Query: 336 LACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP-GSSSWDVF 394
A S +G ++ ++++Y ENAKII D GL V GG NAPYVWV+ P G SSWD F
Sbjct: 303 EAVYSEEGQAQVKALVNFYLENAKIICDKLSFAGLTVYGGVNAPYVWVKTPDGLSSWDFF 362
Query: 395 AEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRL 437
++L+ +++ PGSGFG G + R+SAF RE + EA RR+
Sbjct: 363 DKLLQSANVVGTPGSGFGAAGEGYFRISAFNSRENVEEATRRI 405
|
Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Cyanothece sp. (strain PCC 7424) (taxid: 65393) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 441 | ||||||
| 224063177 | 397 | predicted protein [Populus trichocarpa] | 0.897 | 0.997 | 0.797 | 0.0 | |
| 302141904 | 463 | unnamed protein product [Vitis vinifera] | 0.920 | 0.876 | 0.778 | 0.0 | |
| 225447860 | 440 | PREDICTED: LL-diaminopimelate aminotrans | 0.918 | 0.920 | 0.745 | 0.0 | |
| 225459399 | 485 | PREDICTED: LL-diaminopimelate aminotrans | 0.920 | 0.837 | 0.778 | 0.0 | |
| 255565842 | 563 | Aspartate aminotransferase, putative [Ri | 0.988 | 0.774 | 0.718 | 0.0 | |
| 255587391 | 440 | Aspartate aminotransferase, putative [Ri | 0.916 | 0.918 | 0.722 | 1e-179 | |
| 224094949 | 397 | predicted protein [Populus trichocarpa] | 0.895 | 0.994 | 0.741 | 1e-179 | |
| 356525892 | 449 | PREDICTED: LL-diaminopimelate aminotrans | 0.920 | 0.904 | 0.711 | 1e-177 | |
| 224155798 | 395 | predicted protein [Populus trichocarpa] | 0.888 | 0.992 | 0.739 | 1e-177 | |
| 224134126 | 397 | predicted protein [Populus trichocarpa] | 0.895 | 0.994 | 0.731 | 1e-177 |
| >gi|224063177|ref|XP_002301028.1| predicted protein [Populus trichocarpa] gi|222842754|gb|EEE80301.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/396 (79%), Positives = 356/396 (89%)
Query: 46 MESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK 105
ME L+SGYLFPEIS+RE EHI+K+P+ARLIRLGIGDTTQPIPDIIT+AMAEHA ALST +
Sbjct: 1 MEGLRSGYLFPEISIREHEHIQKNPNARLIRLGIGDTTQPIPDIITTAMAEHADALSTTR 60
Query: 106 GYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQD 165
GY+GYGAEQGNM LR AIA+ Y+ G++G EIF+SDGAQ DISRLQMLLGSNV VAVQD
Sbjct: 61 GYRGYGAEQGNMELRMAIAETLYRGTGVKGSEIFVSDGAQCDISRLQMLLGSNVKVAVQD 120
Query: 166 PSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNN 225
PSFPAYIDTSVIVGQ+GK ++TGKY +IVYMNC ENNFFPDLSTT RTD+IFFCSPNN
Sbjct: 121 PSFPAYIDTSVIVGQSGKLEEKTGKYSDIVYMNCGAENNFFPDLSTTPRTDVIFFCSPNN 180
Query: 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285
PTG AA+W+QLK+LV+FAK NGSIIVYDSAYAAYI+D SPRSI+EIPGA+EVAIEISSFS
Sbjct: 181 PTGSAASWKQLKQLVDFAKTNGSIIVYDSAYAAYISDESPRSIFEIPGAKEVAIEISSFS 240
Query: 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345
KFAGFTGVRLGWTVVPEEL+YSNG+PVI+DFNRIVCTCFNGASNIVQAGGLACLS DG+Q
Sbjct: 241 KFAGFTGVRLGWTVVPEELKYSNGFPVIEDFNRIVCTCFNGASNIVQAGGLACLSRDGYQ 300
Query: 346 ALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILT 405
A+ V+DYYKENAKI+V+AF SLGLKV GGKNAPYVWV FPG SSW+VF EILEKTH++T
Sbjct: 301 AVCNVVDYYKENAKILVEAFASLGLKVYGGKNAPYVWVHFPGMSSWNVFNEILEKTHVVT 360
Query: 406 IPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+PG GFGPGG E+IRVSAF HRE + EA R+K
Sbjct: 361 VPGRGFGPGGEEYIRVSAFSHRENMMEASLRMKKLF 396
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141904|emb|CBI19107.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/406 (77%), Positives = 361/406 (88%)
Query: 36 HCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMA 95
H T+V RN+NME L++GYLF EI RE EH +K+P A+LI+LGIGDTT+PIPDIITSAMA
Sbjct: 57 HGTKVPRNINMERLRNGYLFSEICRRELEHTQKYPHAKLIKLGIGDTTEPIPDIITSAMA 116
Query: 96 EHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLL 155
EHA ALST++GY+GYGAEQGNM LR AIA FY+DMGI+ +E+F+SDGAQ DISR+QMLL
Sbjct: 117 EHAHALSTIRGYRGYGAEQGNMELRNAIAQTFYRDMGIKANEVFVSDGAQCDISRIQMLL 176
Query: 156 GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRT 215
GSNVTVAVQDPSFPAY+D+SVI+GQ+G F +ETGKY NI+YMNC PE+NFFPDLS T RT
Sbjct: 177 GSNVTVAVQDPSFPAYMDSSVIIGQSGNFKEETGKYENILYMNCGPESNFFPDLSNTPRT 236
Query: 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR 275
DIIF CSPNNPTGHAA+ QQL++LVEFAKANGSII++DSAYAAYITD SPRSI+EIPG R
Sbjct: 237 DIIFLCSPNNPTGHAASRQQLEQLVEFAKANGSIIIHDSAYAAYITDESPRSIFEIPGGR 296
Query: 276 EVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGG 335
EVAIEISSFSKFAGFTGVRLGWTVVPEEL YSNG+PVIKD+NRIVCTCFNGAS+I QAGG
Sbjct: 297 EVAIEISSFSKFAGFTGVRLGWTVVPEELLYSNGFPVIKDYNRIVCTCFNGASSIAQAGG 356
Query: 336 LACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFA 395
LACLS DG+ A+ V+DYYKENAKII+D F SLGLKV+GGKNAPY+WV FPG SWDVF
Sbjct: 357 LACLSSDGYLAMNAVLDYYKENAKIIMDTFTSLGLKVHGGKNAPYMWVHFPGLRSWDVFN 416
Query: 396 EILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
EILEKTHI+T+PG+GFGPGG +IRVSAFG RE + EA RRLKN L
Sbjct: 417 EILEKTHIITVPGTGFGPGGEGYIRVSAFGQRESVIEASRRLKNLL 462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447860|ref|XP_002268766.1| PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Vitis vinifera] gi|296081525|emb|CBI20048.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/405 (74%), Positives = 356/405 (87%)
Query: 37 CTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAE 96
CT V+RN+NME L++GYLFPEI+MRE EH++K+P+A++I LGIGDTT+PIPDI+TS+MA
Sbjct: 35 CTRVTRNLNMEKLRNGYLFPEIAMRELEHMKKYPNAKVISLGIGDTTEPIPDIVTSSMAN 94
Query: 97 HAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLG 156
HA LSTV+GY+GYGAEQGN ALR AIA+ Y D+ I+ EIF+SDG+Q DISRLQ+LLG
Sbjct: 95 HARRLSTVEGYRGYGAEQGNKALRKAIAETLYGDLPIKDTEIFVSDGSQCDISRLQLLLG 154
Query: 157 SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTD 216
SNVT+AVQDP+FPAYID+SVI+GQ G F ETGKY+NI YM CRP+NNFFPDL+TT+ TD
Sbjct: 155 SNVTIAVQDPTFPAYIDSSVIIGQTGDFQDETGKYQNIKYMPCRPQNNFFPDLTTTATTD 214
Query: 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276
+IF CSPNNPTGHAA+ +QL++LVEFA+AN SII++DSAYAAY+TD SPRSI+EIPGARE
Sbjct: 215 VIFICSPNNPTGHAASRKQLEQLVEFARANRSIIIFDSAYAAYVTDESPRSIFEIPGARE 274
Query: 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGL 336
VAIEISSFSKFAGFTGVRLGWTVVP+EL +SNG+PVIKD+NRIVCTCFNGAS+I QAGGL
Sbjct: 275 VAIEISSFSKFAGFTGVRLGWTVVPDELLFSNGFPVIKDYNRIVCTCFNGASSIAQAGGL 334
Query: 337 ACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAE 396
ACLS DG A+++V+DYYKENAKI+ D F SLGL V GG NAPY WV FPG SWDVF E
Sbjct: 335 ACLSSDGLMAVQSVVDYYKENAKILGDTFTSLGLDVYGGINAPYAWVHFPGMKSWDVFTE 394
Query: 397 ILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+LEKTHI+T+PG GFGPGG EHIRVSAFGHRE I EA RRLK+ L
Sbjct: 395 LLEKTHIITVPGCGFGPGGEEHIRVSAFGHRECILEASRRLKSLL 439
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459399|ref|XP_002284285.1| PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/406 (77%), Positives = 361/406 (88%)
Query: 36 HCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMA 95
H T+V RN+NME L++GYLF EI RE EH +K+P A+LI+LGIGDTT+PIPDIITSAMA
Sbjct: 79 HGTKVPRNINMERLRNGYLFSEICRRELEHTQKYPHAKLIKLGIGDTTEPIPDIITSAMA 138
Query: 96 EHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLL 155
EHA ALST++GY+GYGAEQGNM LR AIA FY+DMGI+ +E+F+SDGAQ DISR+QMLL
Sbjct: 139 EHAHALSTIRGYRGYGAEQGNMELRNAIAQTFYRDMGIKANEVFVSDGAQCDISRIQMLL 198
Query: 156 GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRT 215
GSNVTVAVQDPSFPAY+D+SVI+GQ+G F +ETGKY NI+YMNC PE+NFFPDLS T RT
Sbjct: 199 GSNVTVAVQDPSFPAYMDSSVIIGQSGNFKEETGKYENILYMNCGPESNFFPDLSNTPRT 258
Query: 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR 275
DIIF CSPNNPTGHAA+ QQL++LVEFAKANGSII++DSAYAAYITD SPRSI+EIPG R
Sbjct: 259 DIIFLCSPNNPTGHAASRQQLEQLVEFAKANGSIIIHDSAYAAYITDESPRSIFEIPGGR 318
Query: 276 EVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGG 335
EVAIEISSFSKFAGFTGVRLGWTVVPEEL YSNG+PVIKD+NRIVCTCFNGAS+I QAGG
Sbjct: 319 EVAIEISSFSKFAGFTGVRLGWTVVPEELLYSNGFPVIKDYNRIVCTCFNGASSIAQAGG 378
Query: 336 LACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFA 395
LACLS DG+ A+ V+DYYKENAKII+D F SLGLKV+GGKNAPY+WV FPG SWDVF
Sbjct: 379 LACLSSDGYLAMNAVLDYYKENAKIIMDTFTSLGLKVHGGKNAPYMWVHFPGLRSWDVFN 438
Query: 396 EILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
EILEKTHI+T+PG+GFGPGG +IRVSAFG RE + EA RRLKN L
Sbjct: 439 EILEKTHIITVPGTGFGPGGEGYIRVSAFGQRESVIEASRRLKNLL 484
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565842|ref|XP_002523910.1| Aspartate aminotransferase, putative [Ricinus communis] gi|223536840|gb|EEF38479.1| Aspartate aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/440 (71%), Positives = 368/440 (83%), Gaps = 4/440 (0%)
Query: 6 VHPKCSTTPLKATVPFTMDFFLSSRW----PVPRHCTEVSRNVNMESLQSGYLFPEISMR 61
+ P+ S + L + T + F S+ + RHCT+V RNVNME+L SGYLF +I
Sbjct: 123 LKPQVSFSLLPYYLYSTAELFHGSKINDDKRIGRHCTQVPRNVNMENLPSGYLFSKIIRA 182
Query: 62 ESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRT 121
E EH++K P ARLI+LG+GDTTQPIP+IITS MAEHA+ LST++GYKGYGAEQGNM LR
Sbjct: 183 EYEHMQKKPHARLIKLGMGDTTQPIPEIITSTMAEHAYGLSTLQGYKGYGAEQGNMELRM 242
Query: 122 AIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQA 181
AIA++FYKDMG++G EIF+SDGAQ DISRLQMLLGSNV VA+QDPSFP YID+SVI+GQA
Sbjct: 243 AIAERFYKDMGVKGQEIFVSDGAQCDISRLQMLLGSNVKVALQDPSFPGYIDSSVIIGQA 302
Query: 182 GKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVE 241
GK ++TGKY N+VYM C EN+FFPDL TT RTDIIFFCSPNNPTG+AA+ QQL+KLV+
Sbjct: 303 GKIEEKTGKYSNLVYMKCGSENDFFPDLMTTPRTDIIFFCSPNNPTGNAASRQQLEKLVD 362
Query: 242 FAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301
FAK NGSIIVYDSAYAAYITD PRSI+EIPGA++VAIEISSFSKFAGFTG+RLGWTVVP
Sbjct: 363 FAKTNGSIIVYDSAYAAYITDGKPRSIFEIPGAKKVAIEISSFSKFAGFTGIRLGWTVVP 422
Query: 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361
EEL YSNG+PVIKDFN IVCTCFNGASNI QAGGLACLS DG++A+ V+DYY ENAKI+
Sbjct: 423 EELLYSNGFPVIKDFNHIVCTCFNGASNISQAGGLACLSEDGYKAVNNVVDYYMENAKIL 482
Query: 362 VDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRV 421
V+AF SLGLKV GGK+APY+WV FPGSSSW VF+EILEKT I+T+PG GFGPGG +IRV
Sbjct: 483 VEAFASLGLKVYGGKDAPYIWVHFPGSSSWAVFSEILEKTDIMTVPGRGFGPGGEGYIRV 542
Query: 422 SAFGHREYISEACRRLKNFL 441
AFGHRE + EA RLK
Sbjct: 543 CAFGHRETVLEASMRLKKLF 562
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587391|ref|XP_002534257.1| Aspartate aminotransferase, putative [Ricinus communis] gi|223525633|gb|EEF28127.1| Aspartate aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 292/404 (72%), Positives = 352/404 (87%)
Query: 38 TEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEH 97
T+V RNVNME L++GYLFPEIS+R+ H+ K PDA+L+ LGIGDTTQP+PDII+ +M E+
Sbjct: 36 TKVPRNVNMEKLRNGYLFPEISIRQIGHLEKFPDAKLLSLGIGDTTQPLPDIISLSMEEY 95
Query: 98 AFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGS 157
A ALST++GY+GYGAEQGN ALR A+A+ FYKD+ ++ E+F+SDG+Q DI+RLQ+LLGS
Sbjct: 96 ARALSTLEGYRGYGAEQGNKALRKAVAETFYKDVQVKDTEVFVSDGSQCDIARLQLLLGS 155
Query: 158 NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDI 217
+VT+AVQDPSFPAYIDTSVI+GQAG F +G+Y +I YM C P+NNFFPDL+ TSRTDI
Sbjct: 156 DVTIAVQDPSFPAYIDTSVIIGQAGNFEDRSGRYGDIEYMKCEPQNNFFPDLAKTSRTDI 215
Query: 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV 277
IFFCSPNNPTGHAAT +QL++LV FAK NGSII++DSAYA YIT+ SPRSI+EIPGAREV
Sbjct: 216 IFFCSPNNPTGHAATRRQLEELVRFAKENGSIIIFDSAYALYITNDSPRSIFEIPGAREV 275
Query: 278 AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLA 337
AIE+SSFSKFAGFTGVRLGWTV+PEEL +SNG+PVI DFNRIVCTCFNGASNI QAGGLA
Sbjct: 276 AIEVSSFSKFAGFTGVRLGWTVIPEELHFSNGFPVINDFNRIVCTCFNGASNIAQAGGLA 335
Query: 338 CLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEI 397
CLS +GF A+R+ +DYYKENAK++++A SLGLK GG+NAPYVWV FPGS SW+VF EI
Sbjct: 336 CLSAEGFMAVRSKVDYYKENAKLLIEALASLGLKAYGGENAPYVWVHFPGSKSWEVFDEI 395
Query: 398 LEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
LEK HI+T+PGSGFGPGG E IR+SAFGH+E I EA +RLK+
Sbjct: 396 LEKAHIITVPGSGFGPGGEEFIRISAFGHKETILEASKRLKHLF 439
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224094949|ref|XP_002310302.1| predicted protein [Populus trichocarpa] gi|222853205|gb|EEE90752.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 293/395 (74%), Positives = 344/395 (87%)
Query: 46 MESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK 105
ME L+SGYLFPEIS RE +HI K+PDA+LI LGIGDTT+P+PDII S+MA +A +LST +
Sbjct: 1 MEKLRSGYLFPEISKREVQHIEKYPDAKLISLGIGDTTEPLPDIIASSMANYALSLSTAE 60
Query: 106 GYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQD 165
GY+GYGAEQGN ALR AIA+ FYKD+ I+ E+F+SDGAQ DI+RLQ+LLGSNV++AVQD
Sbjct: 61 GYRGYGAEQGNKALRKAIAETFYKDVRIKETEVFVSDGAQCDITRLQLLLGSNVSIAVQD 120
Query: 166 PSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNN 225
PSFPAY+D+SVI+GQAG F ++ Y NI YM C P+ NFFPDL+ TSRTDIIFFCSPNN
Sbjct: 121 PSFPAYVDSSVIIGQAGDFEDKSRMYGNIEYMKCVPQTNFFPDLAKTSRTDIIFFCSPNN 180
Query: 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285
PTGHAAT QQL++LV+FAK NGSII++DSAYAAYITD SPRSI+EIPGAREVAIE+SSFS
Sbjct: 181 PTGHAATRQQLEQLVKFAKENGSIIIFDSAYAAYITDDSPRSIFEIPGAREVAIEVSSFS 240
Query: 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345
KFAGFTG+RLGWTVVPEEL +SNG+PVI DFNRIVCTCFNGAS+I Q GGLACLSP+GF
Sbjct: 241 KFAGFTGIRLGWTVVPEELSFSNGFPVINDFNRIVCTCFNGASSIAQVGGLACLSPEGFA 300
Query: 346 ALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILT 405
A+ ++ DYYKENAKI+++ F SLGLKV GGKNAPY+WV FPGS SWDVF EILE+THI+T
Sbjct: 301 AVCSITDYYKENAKILLNTFASLGLKVYGGKNAPYLWVHFPGSKSWDVFTEILERTHIIT 360
Query: 406 IPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440
+PGSGFGP G E +RV AFGHRE I EA RRL+N
Sbjct: 361 VPGSGFGPAGEEFMRVCAFGHRESILEAARRLENL 395
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525892|ref|XP_003531555.1| PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 289/406 (71%), Positives = 345/406 (84%)
Query: 36 HCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMA 95
HCT+V RNVNME LQ GYLFPEI E H+ +P A +I LGIGDTTQP+P I+TS+M
Sbjct: 39 HCTKVPRNVNMEKLQHGYLFPEIERHELMHLEMYPHANVIDLGIGDTTQPLPTIVTSSMV 98
Query: 96 EHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLL 155
+ LST GYKGYG EQG ALR AI+ FYKD+GI+ E+F+SDGAQ DI+RLQ+L+
Sbjct: 99 DFVHGLSTATGYKGYGPEQGEKALRKAISVTFYKDLGIKPSEVFVSDGAQCDITRLQLLM 158
Query: 156 GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRT 215
G N+ +AVQDPSFPAYID+SVI+GQAGKF+ + GKY+NI YM C P+++FFPDL T SRT
Sbjct: 159 GPNLKIAVQDPSFPAYIDSSVIIGQAGKFVDKAGKYKNIEYMTCGPQSDFFPDLPTISRT 218
Query: 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR 275
++IFF SPNNPTGHAAT +QL++LV+FAK NGSII++DSAY+AYITD SP+SIYEIPGAR
Sbjct: 219 ELIFFNSPNNPTGHAATRKQLEQLVDFAKVNGSIIIFDSAYSAYITDDSPKSIYEIPGAR 278
Query: 276 EVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGG 335
EVAIE+SSFSKFAGFTGVRLGWTVVPEEL YSNG+PV+ DFNRI+CTCFNGASNI QAGG
Sbjct: 279 EVAIEVSSFSKFAGFTGVRLGWTVVPEELLYSNGFPVVHDFNRIMCTCFNGASNIAQAGG 338
Query: 336 LACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFA 395
LACLSP+G +A++T++DYY ENA+I+VDA SLGL V GGKNAPYVWV FPGS SW+VFA
Sbjct: 339 LACLSPEGLRAMQTLVDYYMENARILVDALTSLGLTVYGGKNAPYVWVHFPGSKSWNVFA 398
Query: 396 EILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
EILEKTHI+T+PGSGFGPGG E+IR+SAFG R+ I EA +RLK +
Sbjct: 399 EILEKTHIITVPGSGFGPGGEEYIRISAFGQRDSIIEASKRLKYLI 444
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224155798|ref|XP_002337640.1| predicted protein [Populus trichocarpa] gi|222839791|gb|EEE78114.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 290/392 (73%), Positives = 342/392 (87%)
Query: 49 LQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK 108
++SGYLFPEIS RE +HI K+PDA+LI LGIGDTT+P+PDII S+MA +A +LST +GY+
Sbjct: 2 VRSGYLFPEISKREVQHIEKYPDAKLISLGIGDTTEPLPDIIASSMANYALSLSTAEGYR 61
Query: 109 GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSF 168
GYGAEQGN ALR AIA+ FYKD+ I+ E+F+SDGAQ DI+RLQ+LLGSNV++AVQDPSF
Sbjct: 62 GYGAEQGNKALRKAIAETFYKDVRIKETEVFVSDGAQCDITRLQLLLGSNVSIAVQDPSF 121
Query: 169 PAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTG 228
PAY+D+SVI+GQAG F ++ Y NI YM C P+ NFFPDL+ TSRTDIIFFCSPNNPTG
Sbjct: 122 PAYVDSSVIIGQAGDFEDKSRMYGNIEYMKCVPQTNFFPDLAKTSRTDIIFFCSPNNPTG 181
Query: 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFA 288
HAAT QQL++LV+FAK NGSII++DSAYAAYITD SPRSI+EIPGAREVAIE+SSFSKFA
Sbjct: 182 HAATRQQLEQLVKFAKENGSIIIFDSAYAAYITDDSPRSIFEIPGAREVAIEVSSFSKFA 241
Query: 289 GFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALR 348
GFTG+RLGWTVVPEEL +SNG+PVI DFNRIVCTCFNGAS+I Q GGLACLSP+GF A+
Sbjct: 242 GFTGIRLGWTVVPEELSFSNGFPVINDFNRIVCTCFNGASSIAQVGGLACLSPEGFAAVC 301
Query: 349 TVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPG 408
++ DYYKENAKI+++ F SLGLKV GGKNAPY+WV FPGS SWDVF EILE+THI+T+PG
Sbjct: 302 SITDYYKENAKILLNTFASLGLKVYGGKNAPYLWVHFPGSKSWDVFTEILERTHIITVPG 361
Query: 409 SGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440
SGFGP G E +RV AFGHRE I EA RRL+N
Sbjct: 362 SGFGPAGEEFMRVCAFGHRESILEAARRLENL 393
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134126|ref|XP_002327762.1| predicted protein [Populus trichocarpa] gi|222836847|gb|EEE75240.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 289/395 (73%), Positives = 341/395 (86%)
Query: 46 MESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK 105
ME LQS YLFPEISMRE +HI K+PDA+LI LGIGDTT+PIPDII S+MA +A +LST +
Sbjct: 1 MEKLQSAYLFPEISMREVQHIEKYPDAKLISLGIGDTTEPIPDIIASSMANYARSLSTAE 60
Query: 106 GYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQD 165
GY GYGAEQGN ALR AIA+ FY+D+ ++ E+F+SDG+Q DI+RLQ+L GSNV++AVQD
Sbjct: 61 GYSGYGAEQGNKALRKAIAETFYRDVRVKETEVFVSDGSQCDITRLQLLFGSNVSIAVQD 120
Query: 166 PSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNN 225
PSFPAY+D+SVI+GQAG F +TG Y I YM C P+ NFFPDL+T SR+DIIFFCSPNN
Sbjct: 121 PSFPAYVDSSVIIGQAGDFEDKTGMYGKIQYMKCLPKTNFFPDLATASRSDIIFFCSPNN 180
Query: 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285
PTGHAAT QQL++LV+FAK NGSII++DSAYAAYI+D SPRSI+EIPGAREVAIE+SSFS
Sbjct: 181 PTGHAATRQQLEQLVKFAKENGSIIIFDSAYAAYISDDSPRSIFEIPGAREVAIEVSSFS 240
Query: 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345
KFAGFTG+RLGWTVVPEEL +SNG+PVI DFNRIVCTCFNGASNI QAGGLACLSP+GF
Sbjct: 241 KFAGFTGIRLGWTVVPEELSFSNGFPVINDFNRIVCTCFNGASNIAQAGGLACLSPEGFA 300
Query: 346 ALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILT 405
++ ++I YKENAKI+ D F SLGLKV GG+NAPY+WV FPGS SWD+F EILEKTHI+T
Sbjct: 301 SVHSIIKCYKENAKILRDTFSSLGLKVYGGENAPYLWVHFPGSKSWDIFTEILEKTHIIT 360
Query: 406 IPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440
+PGSGFGP G E +R+SAFGH+E I EA RRL N
Sbjct: 361 VPGSGFGPEGEEFMRISAFGHKESIIEAARRLGNL 395
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 441 | ||||||
| TAIR|locus:2134243 | 461 | AGD2 "ABERRANT GROWTH AND DEAT | 0.909 | 0.869 | 0.700 | 2.4e-156 | |
| TAIR|locus:2040481 | 456 | ALD1 "AGD2-like defense respon | 0.981 | 0.949 | 0.643 | 1.7e-155 | |
| UNIPROTKB|Q74GT3 | 410 | dapL "LL-diaminopimelate amino | 0.886 | 0.953 | 0.466 | 3.1e-90 | |
| TIGR_CMR|GSU_0162 | 410 | GSU_0162 "aromatic aminotransf | 0.886 | 0.953 | 0.466 | 3.1e-90 | |
| TIGR_CMR|CHY_1492 | 390 | CHY_1492 "putative aspartate a | 0.816 | 0.923 | 0.278 | 4.7e-32 | |
| TIGR_CMR|CHY_0115 | 392 | CHY_0115 "putative aspartate a | 0.773 | 0.869 | 0.284 | 7.7e-32 | |
| TIGR_CMR|DET_0739 | 388 | DET_0739 "aminotransferase, cl | 0.816 | 0.927 | 0.282 | 4.9e-30 | |
| UNIPROTKB|Q81K72 | 396 | BAS4771 "Aminotransferase, cla | 0.786 | 0.876 | 0.272 | 4.5e-27 | |
| TIGR_CMR|BA_5133 | 396 | BA_5133 "aminotransferase, cla | 0.786 | 0.876 | 0.272 | 4.5e-27 | |
| UNIPROTKB|Q81MJ3 | 392 | BAS3945 "Aminotransferase, cla | 0.768 | 0.864 | 0.274 | 3.4e-25 |
| TAIR|locus:2134243 AGD2 "ABERRANT GROWTH AND DEATH 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
Identities = 281/401 (70%), Positives = 332/401 (82%)
Query: 38 TEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEH 97
T+VSRN NM LQ+GYLFPEI+ R S H+ K+PDA++I LGIGDTT+PIP++ITSAMA+
Sbjct: 57 TKVSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKK 116
Query: 98 AFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGS 157
A LST++GY GYGAEQG LR AIA FY +GI D++F+SDGA+ DISRLQ++ GS
Sbjct: 117 AHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRLQVMFGS 176
Query: 158 NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDI 217
NVT+AVQDPS+PAY+D+SVI+GQ G+F + KY NI YM C PEN FFPDLST RTDI
Sbjct: 177 NVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDI 236
Query: 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV 277
IFFCSPNNPTG AAT +QL +LVEFAK NGSIIVYDSAYA Y++D +PRSI+EIPGA EV
Sbjct: 237 IFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEV 296
Query: 278 AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLA 337
A+E +SFSK+AGFTGVRLGWTV+P++L YS+G+PV KDFNRI+CTCFNGASNI QAG LA
Sbjct: 297 AMETASFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALA 356
Query: 338 CLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEI 397
CL+P+G +A+ VI +YKEN II+D F SLG V GGKNAPYVWV FP SSWDVFAEI
Sbjct: 357 CLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEI 416
Query: 398 LEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLK 438
LEKTH++T PGSGFGPGG +RVSAFGHRE I EACRR K
Sbjct: 417 LEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFK 457
|
|
| TAIR|locus:2040481 ALD1 "AGD2-like defense response protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1516 (538.7 bits), Expect = 1.7e-155, P = 1.7e-155
Identities = 284/441 (64%), Positives = 355/441 (80%)
Query: 1 MYVDQVHPKCSTTPLKATVP-FTMDFFLSSRWPVPRHCTEVSRNVNMESLQSGYLFPEIS 59
M+ P CS+ P K +P ++DF + T++ RNVN+E L++ YLFPEI+
Sbjct: 5 MFFSSASPLCSS-PSK--IPKASLDFEMKKLGG----STKLVRNVNLEKLKNNYLFPEIN 57
Query: 60 MRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMAL 119
RE EHI KHP+ +LI LG GDTT+PIP+ ITS M+ A LSTV+GY+GYG EQGN L
Sbjct: 58 RRELEHIEKHPNVQLISLGTGDTTEPIPEQITSHMSNFAHGLSTVEGYRGYGLEQGNKTL 117
Query: 120 RTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVG 179
R AIA+ FY+D+ ++ +E+F+SDGAQSDISRLQ+LLGSNVT+AVQDP+FPAYID+SVI+G
Sbjct: 118 RKAIAETFYRDLHVKSNEVFVSDGAQSDISRLQLLLGSNVTIAVQDPTFPAYIDSSVIIG 177
Query: 180 QAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKL 239
Q G F ++T KY+N+VYM C P N+FFPDL+ T RTD+IFFCSPNNPTG+ A+ +QL +L
Sbjct: 178 QTGHFHEKTKKYQNVVYMPCGPNNSFFPDLAMTPRTDVIFFCSPNNPTGYVASRKQLHQL 237
Query: 240 VEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299
V+FAK NGSII++DSAYAA+I D SPRSIYEIPGAREVAIE+SSFSKFAGFTGVRLGW++
Sbjct: 238 VDFAKTNGSIIIFDSAYAAFIEDGSPRSIYEIPGAREVAIEVSSFSKFAGFTGVRLGWSI 297
Query: 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAK 359
+P+EL YSNG+P+I DF+RIV T FNGASNI QAGGLACLS G + +R+V +YYKEN K
Sbjct: 298 IPDELLYSNGFPIINDFHRIVTTSFNGASNIAQAGGLACLSSGGLKEIRSVNNYYKENRK 357
Query: 360 IIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHI 419
I++D SLGLKV GG NAPY+WV F GS SWDVF EILE THI+T+PGSGFGPGG E++
Sbjct: 358 ILMDTLVSLGLKVYGGVNAPYLWVHFKGSKSWDVFNEILENTHIITVPGSGFGPGGEEYL 417
Query: 420 RVSAFGHREYISEACRRLKNF 440
R+S FG R++I EA +RL+NF
Sbjct: 418 RISGFGRRDHIVEASKRLQNF 438
|
|
| UNIPROTKB|Q74GT3 dapL "LL-diaminopimelate aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 187/401 (46%), Positives = 255/401 (63%)
Query: 49 LQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK 108
L++GYLFPEI R E +P A++IRLGIGD T+P+ + A E L+T + +
Sbjct: 11 LKAGYLFPEIGRRVREFAAANPSAKVIRLGIGDVTRPLAPAVIKAFHEAVDDLATTENFA 70
Query: 109 GYGAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISRLQMLLGSNVTVAVQDP 166
GYG EQG L AI +K YK +G++ +E+FISDG++ D + + + + VA+ DP
Sbjct: 71 GYGPEQGYDWLINAIIEKSYKPLGVDLKTEEMFISDGSKCDCANILDIFALDNVVAIGDP 130
Query: 167 SFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNP 226
+P Y DT+V++G+ G+ + G Y+ IVYM C EN F P L T + DII+ C PNNP
Sbjct: 131 VYPVYNDTNVMIGRTGE-ADDKGYYKGIVYMPCTEENGFIPSLPT-EKVDIIYLCFPNNP 188
Query: 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFS 285
TG AT +LKK V++A AN ++I +D+AY A+ITDP+ P SIYEI GA++ AIE SFS
Sbjct: 189 TGTVATKAELKKWVDYAIANDAVIFFDAAYEAFITDPAIPHSIYEIEGAKKCAIEFRSFS 248
Query: 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI----VCTCFNGASNIVQAGGLACLSP 341
K AGFTGVR G VVPEE+ + FN++ T FNGAS VQ A S
Sbjct: 249 KTAGFTGVRCGLVVVPEEVMGTTPTGEKYSFNKLWLRRTTTKFNGASYPVQKAAAAVYSD 308
Query: 342 DGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-SSWDVFAEILEK 400
+G+Q + +IDYY ENA+II + + GL V GG NAPY+W++ PG SSWD F ++L +
Sbjct: 309 EGWQQNKEIIDYYMENARIIREGLAAAGLTVYGGVNAPYIWLKTPGGMSSWDFFDKLLNE 368
Query: 401 THILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+++ PGSGFGP G R+SAFGHRE + EA R+K L
Sbjct: 369 CNVVGTPGSGFGPSGEGFFRLSAFGHRENVIEAVERIKKNL 409
|
|
| TIGR_CMR|GSU_0162 GSU_0162 "aromatic aminotransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 187/401 (46%), Positives = 255/401 (63%)
Query: 49 LQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK 108
L++GYLFPEI R E +P A++IRLGIGD T+P+ + A E L+T + +
Sbjct: 11 LKAGYLFPEIGRRVREFAAANPSAKVIRLGIGDVTRPLAPAVIKAFHEAVDDLATTENFA 70
Query: 109 GYGAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISRLQMLLGSNVTVAVQDP 166
GYG EQG L AI +K YK +G++ +E+FISDG++ D + + + + VA+ DP
Sbjct: 71 GYGPEQGYDWLINAIIEKSYKPLGVDLKTEEMFISDGSKCDCANILDIFALDNVVAIGDP 130
Query: 167 SFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNP 226
+P Y DT+V++G+ G+ + G Y+ IVYM C EN F P L T + DII+ C PNNP
Sbjct: 131 VYPVYNDTNVMIGRTGE-ADDKGYYKGIVYMPCTEENGFIPSLPT-EKVDIIYLCFPNNP 188
Query: 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFS 285
TG AT +LKK V++A AN ++I +D+AY A+ITDP+ P SIYEI GA++ AIE SFS
Sbjct: 189 TGTVATKAELKKWVDYAIANDAVIFFDAAYEAFITDPAIPHSIYEIEGAKKCAIEFRSFS 248
Query: 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI----VCTCFNGASNIVQAGGLACLSP 341
K AGFTGVR G VVPEE+ + FN++ T FNGAS VQ A S
Sbjct: 249 KTAGFTGVRCGLVVVPEEVMGTTPTGEKYSFNKLWLRRTTTKFNGASYPVQKAAAAVYSD 308
Query: 342 DGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-SSWDVFAEILEK 400
+G+Q + +IDYY ENA+II + + GL V GG NAPY+W++ PG SSWD F ++L +
Sbjct: 309 EGWQQNKEIIDYYMENARIIREGLAAAGLTVYGGVNAPYIWLKTPGGMSSWDFFDKLLNE 368
Query: 401 THILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+++ PGSGFGP G R+SAFGHRE + EA R+K L
Sbjct: 369 CNVVGTPGSGFGPSGEGFFRLSAFGHRENVIEAVERIKKNL 409
|
|
| TIGR_CMR|CHY_1492 CHY_1492 "putative aspartate aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 112/402 (27%), Positives = 182/402 (45%)
Query: 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA 112
YLF I +E +K +I LGIGD P P I + E A + ++ Y +
Sbjct: 13 YLFARIERLIAE--KKEAGVDVISLGIGDPDTPTPKHI---IEELYLAAQNPENHQ-YPS 66
Query: 113 EQGNMALRTAIADKFYKDMGIEGD---EIFISDGAQSDISRLQML-LGSNVTVAVQDPSF 168
G ++ R A+A + + G+E D E+ G++ I+ + + V V DP +
Sbjct: 67 SVGMLSYRQAVAAWYARRFGVELDPKTEVVSLLGSKEGIAHISWCYVDPGDLVLVPDPGY 126
Query: 169 PAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSP 223
P Y +++ G G K M +PEN F PDL + + ++F P
Sbjct: 127 PVYEGGTILAG--GTTYK----------MPLKPENGFLPDLDSIPEEVARKAKLMFINYP 174
Query: 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYEIPGAREVAIEI 281
NNPTG A +K+V FAK ++ +D+AY+ D +P S E+ GA++V IE
Sbjct: 175 NNPTGAVADLGFFEKVVHFAKKYEILVCHDAAYSEITFDGYRAP-SFLEVKGAKDVGIEF 233
Query: 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP 341
S SK TG R+GW V N I R+ +G +Q G+ L
Sbjct: 234 HSLSKTYNMTGWRIGWAV-------GNA-KAIDALGRLKSNIDSGVFQAIQYAGIKAL-- 283
Query: 342 DGFQ-ALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAE-ILE 399
+G Q ++ + D Y + ++++ LG ++ K Y+W P + FAE ++E
Sbjct: 284 EGPQDVVKELCDLYAQRRDLVIETLNKLGWNLSKPKGTFYIWAPVPKGFTSASFAEYLIE 343
Query: 400 KTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
K ++ PG+G+G G + R+S + EA +R++ L
Sbjct: 344 KAGVVITPGNGYGTNGEGYFRISLTIPTSRLKEALQRIEQHL 385
|
|
| TIGR_CMR|CHY_0115 CHY_0115 "putative aspartate aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 108/380 (28%), Positives = 177/380 (46%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI 133
+I LG+G+ PD +T S KGY Y + QG + LR I+ + G+
Sbjct: 32 VISLGVGE-----PDFVTPWYIREEGIYSLEKGYTMYTSNQGLLELREEISRYLLRLTGV 86
Query: 134 EGD---EIFISDGAQSDIS-RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189
D E+ ++ G + L+ L+ V + +PS+ +Y T+++ G G
Sbjct: 87 AYDPVQEVLVTVGVSEGVDLALRALVSPGDEVLIPEPSYVSYGPTTMLAG---------G 137
Query: 190 KYRNIVYMNCRPENNF--FPDL---STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAK 244
K VY+ RPEN F P+L + T ++ I+ C PNNPTG T L KL+
Sbjct: 138 KP---VYIRTRPENGFKLTPELLEEAITPKSKILLLCYPNNPTGAVMTADDLAKLLPVIA 194
Query: 245 ANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304
+ +++ D YA + S+ PG +E + ++ FSK TG RLG+ P+E+
Sbjct: 195 EHDLLVISDEIYAELTYEGKHVSVASFPGMKERTVILNGFSKAFAMTGWRLGYAAGPKEI 254
Query: 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDA 364
+ ++ C A Q + L A++ +++ Y +I+V+A
Sbjct: 255 -----IAAMTKIHQYTMLC---APITAQKAAIEALKNQN-DAVKKMVEEYNYRRRILVEA 305
Query: 365 FQSLGLKVNGGKNAPYVW--VQFPGSSSWDVFAE-ILEKTHILTIPGSGFGPGGNEHIRV 421
F +GL + K A Y + + G SS + FAE +L + + +PGS FGP G IR+
Sbjct: 306 FSEMGLWLFEPKGAFYAFPDISATGLSS-EEFAERLLFEEKVAVVPGSAFGPSGEGFIRI 364
Query: 422 SAFGHREYISEACRRLKNFL 441
S R+ + EA +R+K F+
Sbjct: 365 SYATARKDLIEALKRIKRFV 384
|
|
| TIGR_CMR|DET_0739 DET_0739 "aminotransferase, classes I and II" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 113/400 (28%), Positives = 174/400 (43%)
Query: 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA 112
YLF +IS + +E K + +I IGD P P I +AE A ++ Y
Sbjct: 13 YLFVQISKKIAEKRAKGEE--VISFAIGDPDLPTPKHI---LAELCKAAEDPANHR-YPE 66
Query: 113 EQGNMALRTAIADKFYKDMGIE---GDEIFISDGAQSDISRLQM-LLGSNVTVAVQDPSF 168
+G LR A+A+ + K G++ E+ G++ I L V DP++
Sbjct: 67 TEGLPVLRKAMAEWYEKRFGVKLNPDTEVLPLIGSKEGIGHAAWCFLDPGDVALVPDPAY 126
Query: 169 PAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT-----SRTDIIFFCSP 223
P Y +S + G + YM ENNF PD + S+ I++ P
Sbjct: 127 PVYAISSQLAGA------------EVFYMPLNKENNFLPDFNAIPQDVLSKAKILWINYP 174
Query: 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEIS 282
NNPTG A K+ EFA + + +D Y+ D P S E GA+EV IE
Sbjct: 175 NNPTGAVAGLDFFKEAAEFAAKHNLAVCHDGPYSEIAFDGYRPVSFLEADGAKEVGIEFH 234
Query: 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD 342
S SK TG R+G V N +I R +G +Q +A L+
Sbjct: 235 SLSKSYNMTGWRIGMAV-------GNA-KMIDALRRFKSNLDSGIPQAIQLMAIAALN-- 284
Query: 343 GFQ-ALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP-GSSSWDVFAEILEK 400
G Q + Y+ +V+A +++G++V K + Y+W P G +S E+L+K
Sbjct: 285 GSQDVISQNCAVYQRRRDRLVEALRNIGMEVTAPKASLYIWAPVPEGYTSASFATELLDK 344
Query: 401 THILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440
T ++ PG+G+G G +IR+S E + + +L NF
Sbjct: 345 TGVVVTPGTGYGTSGEGYIRLSLTVPDEQLEKGIAKLANF 384
|
|
| UNIPROTKB|Q81K72 BAS4771 "Aminotransferase, class I/II" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 102/374 (27%), Positives = 164/374 (43%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI 133
+I LG+G+ PD +T A S +GY Y A G + LR IA K +
Sbjct: 31 VISLGVGE-----PDFVTPWNVRQACIRSIEQGYTSYTANAGLLELRQEIAKYLKKQFAV 85
Query: 134 E---GDEIFISDGAQSDIS-RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189
DEI ++ GA + ++ ++ + V + +PSF +Y + G G +
Sbjct: 86 SYDPNDEIIVTVGASQALDVAMRAIINPDDEVLIIEPSFVSYAPLVTLAG--GVPVPVAT 143
Query: 190 KYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSI 249
N +PE + + T++T I CSPNNPTG +L+++ + I
Sbjct: 144 TLEN--EFKVQPEQI---EAAITAKTKAILLCSPNNPTGAMLNKSELEEIAVIVEKYNLI 198
Query: 250 IVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309
++ D YA + D + S I RE I IS FSK TG RLG P + +S
Sbjct: 199 VLSDEIYAELVYDEAYTSFASIKNMREHTILISGFSKGFAMTGWRLGMIAAP--VYFSEL 256
Query: 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG 369
I ++ ++C A + Q L L + +R + D YK+ + +F +G
Sbjct: 257 MLKIHQYS-MMC-----APTMSQFAALEALRAGNDEVIR-MRDSYKKRRNFMTTSFNEMG 309
Query: 370 LKVNGGKNAPYVW--VQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHR 427
L + A YV+ + G SS + ++L + + +PGS FG G IR S
Sbjct: 310 LTCHVPGGAFYVFPSISSTGLSSAEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSL 369
Query: 428 EYISEACRRLKNFL 441
E + EA +R++ F+
Sbjct: 370 EQLMEAMKRMERFV 383
|
|
| TIGR_CMR|BA_5133 BA_5133 "aminotransferase, classes I and II" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 102/374 (27%), Positives = 164/374 (43%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI 133
+I LG+G+ PD +T A S +GY Y A G + LR IA K +
Sbjct: 31 VISLGVGE-----PDFVTPWNVRQACIRSIEQGYTSYTANAGLLELRQEIAKYLKKQFAV 85
Query: 134 E---GDEIFISDGAQSDIS-RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189
DEI ++ GA + ++ ++ + V + +PSF +Y + G G +
Sbjct: 86 SYDPNDEIIVTVGASQALDVAMRAIINPDDEVLIIEPSFVSYAPLVTLAG--GVPVPVAT 143
Query: 190 KYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSI 249
N +PE + + T++T I CSPNNPTG +L+++ + I
Sbjct: 144 TLEN--EFKVQPEQI---EAAITAKTKAILLCSPNNPTGAMLNKSELEEIAVIVEKYNLI 198
Query: 250 IVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309
++ D YA + D + S I RE I IS FSK TG RLG P + +S
Sbjct: 199 VLSDEIYAELVYDEAYTSFASIKNMREHTILISGFSKGFAMTGWRLGMIAAP--VYFSEL 256
Query: 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG 369
I ++ ++C A + Q L L + +R + D YK+ + +F +G
Sbjct: 257 MLKIHQYS-MMC-----APTMSQFAALEALRAGNDEVIR-MRDSYKKRRNFMTTSFNEMG 309
Query: 370 LKVNGGKNAPYVW--VQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHR 427
L + A YV+ + G SS + ++L + + +PGS FG G IR S
Sbjct: 310 LTCHVPGGAFYVFPSISSTGLSSAEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSL 369
Query: 428 EYISEACRRLKNFL 441
E + EA +R++ F+
Sbjct: 370 EQLMEAMKRMERFV 383
|
|
| UNIPROTKB|Q81MJ3 BAS3945 "Aminotransferase, classes I and II" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 3.4e-25, P = 3.4e-25
Identities = 103/375 (27%), Positives = 176/375 (46%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI 133
+I LG G+ QP P I A+ + A T+ +K Y +G+ +L+ A+A + ++ +
Sbjct: 35 VINLGQGNPDQPTPQHIVKALQDAAE--KTIH-HK-YPPFRGHESLKEAVATFYQREYDV 90
Query: 134 EGD---EIFISDGAQSDISRLQMLLGS-NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189
+ E+ I G ++ + L + + T+ V DP +P Y+ + V + +A +F ET
Sbjct: 91 VVNPKTEVAILFGGKAGLVELPVCFTNPGDTILVPDPGYPDYL-SGVALAKA-QF--ET- 145
Query: 190 KYRNIVYMNCRPENNFFPDL-----STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAK 244
M ENNF PD S R ++F PNNPTG A+ + + FA
Sbjct: 146 -------MPLIAENNFLPDYTKIDDSIAERAKLMFLNYPNNPTGATASKDFFDETIHFAN 198
Query: 245 ANGSIIVYDSAYAAYITD-PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303
+ ++V+D AY A D P S + GA++ IEI + SK G R+ + V E
Sbjct: 199 KHNILVVHDFAYGAIGFDGQKPVSFLQADGAKDTGIEIYTLSKTFNMAGWRIAFAVGNES 258
Query: 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVD 363
+ + +++D + + F GA I A A LS + +++ Y+ ++
Sbjct: 259 VIETIN--LLQD--HMYVSIF-GA--IQDAAREALLSSQS--CVIDLVNSYESRRNALIS 309
Query: 364 AFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEIL-EKTHILTIPGSGFGPGGNEHIRVS 422
A S+G V+ + + W+ P + + F++IL EK H+ PG GFG G ++RV
Sbjct: 310 ACHSIGWNVDIPTGSFFAWLPVPEGYTSEQFSDILLEKAHVAVAPGVGFGEHGEGYVRVG 369
Query: 423 AFGHREYISEACRRL 437
+ + EA R+
Sbjct: 370 LLHTEDRLREAINRI 384
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q31PY6 | DAPAT_SYNE7 | 2, ., 6, ., 1, ., 8, 3 | 0.4370 | 0.8956 | 0.9610 | yes | no |
| B9M384 | DAPAT_GEOSF | 2, ., 6, ., 1, ., 8, 3 | 0.4570 | 0.9002 | 0.9682 | yes | no |
| Q5LC03 | DAPAT_BACFN | 2, ., 6, ., 1, ., 8, 3 | 0.4373 | 0.9024 | 0.9707 | yes | no |
| C6E9Q7 | DAPAT_GEOSM | 2, ., 6, ., 1, ., 8, 3 | 0.4668 | 0.9002 | 0.9659 | yes | no |
| Q04UL5 | DAPAT_LEPBJ | 2, ., 6, ., 1, ., 8, 3 | 0.4466 | 0.8911 | 0.9632 | yes | no |
| Q7UZZ3 | DAPAT_PROMP | 2, ., 6, ., 1, ., 8, 3 | 0.4387 | 0.9024 | 0.9754 | yes | no |
| B8HJY4 | DAPAT_CYAP4 | 2, ., 6, ., 1, ., 8, 3 | 0.4538 | 0.8866 | 0.9513 | yes | no |
| A1ATI6 | DAPAT_PELPD | 2, ., 6, ., 1, ., 8, 3 | 0.4447 | 0.9002 | 0.9682 | yes | no |
| Q10MQ2 | DAPAT_ORYSJ | 2, ., 6, ., 1, ., 8, 3 | 0.7022 | 0.9138 | 0.8685 | yes | no |
| Q2JLL9 | DAPAT_SYNJB | 2, ., 6, ., 1, ., 8, 3 | 0.4367 | 0.8911 | 0.9447 | yes | no |
| B1XKF6 | DAPAT_SYNP2 | 2, ., 6, ., 1, ., 8, 3 | 0.4556 | 0.8979 | 0.9658 | yes | no |
| B0JUM0 | DAPAT_MICAN | 2, ., 6, ., 1, ., 8, 3 | 0.4466 | 0.8911 | 0.9562 | yes | no |
| B1WSG7 | DAPAT_CYAA5 | 2, ., 6, ., 1, ., 8, 3 | 0.4491 | 0.8911 | 0.9562 | yes | no |
| Q8YM38 | DAPT1_NOSS1 | 2, ., 6, ., 1, ., 8, 3 | 0.4615 | 0.8911 | 0.9562 | yes | no |
| Q9ZQI7 | ALD1_ARATH | 2, ., 6, ., 1, ., - | 0.6410 | 0.9818 | 0.9495 | yes | no |
| Q5L6M0 | DAPAT_CHLAB | 2, ., 6, ., 1, ., 8, 3 | 0.4275 | 0.8684 | 0.9623 | yes | no |
| Q8AAB8 | DAPAT_BACTN | 2, ., 6, ., 1, ., 8, 3 | 0.4422 | 0.9024 | 0.9707 | yes | no |
| Q8F814 | DAPAT_LEPIN | 2, ., 6, ., 1, ., 8, 3 | 0.4532 | 0.8979 | 0.9705 | yes | no |
| Q5N492 | DAPAT_SYNP6 | 2, ., 6, ., 1, ., 8, 3 | 0.4370 | 0.8956 | 0.9610 | yes | no |
| A6L8U2 | DAPAT_PARD8 | 2, ., 6, ., 1, ., 8, 3 | 0.4496 | 0.8979 | 0.9682 | yes | no |
| B3E933 | DAPAT_GEOLS | 2, ., 6, ., 1, ., 8, 3 | 0.4496 | 0.9002 | 0.9682 | yes | no |
| Q3A1U5 | DAPAT_PELCD | 2, ., 6, ., 1, ., 8, 3 | 0.4447 | 0.9002 | 0.9682 | yes | no |
| Q824A4 | DAPAT_CHLCV | 2, ., 6, ., 1, ., 8, 3 | 0.4303 | 0.8639 | 0.9645 | yes | no |
| Q24S01 | DAPAT_DESHY | 2, ., 6, ., 1, ., 8, 3 | 0.4207 | 0.8956 | 0.9610 | yes | no |
| B0CDH5 | DAPAT_ACAM1 | 2, ., 6, ., 1, ., 8, 3 | 0.4540 | 0.8911 | 0.9608 | yes | no |
| Q3MAL4 | DAPT1_ANAVT | 2, ., 6, ., 1, ., 8, 3 | 0.4516 | 0.8911 | 0.9562 | yes | no |
| Q2JS04 | DAPAT_SYNJA | 2, ., 6, ., 1, ., 8, 3 | 0.4342 | 0.8911 | 0.9562 | yes | no |
| A3DK17 | DAPAT_CLOTH | 2, ., 6, ., 1, ., 8, 3 | 0.4334 | 0.8979 | 0.9658 | yes | no |
| Q64SY6 | DAPAT_BACFR | 2, ., 6, ., 1, ., 8, 3 | 0.4373 | 0.9024 | 0.9707 | yes | no |
| O26158 | DAPAT_METTH | 2, ., 6, ., 1, ., 8, 3 | 0.4352 | 0.9047 | 0.9731 | yes | no |
| B5EGX2 | DAPAT_GEOBB | 2, ., 6, ., 1, ., 8, 3 | 0.4594 | 0.9002 | 0.9659 | yes | no |
| B7KL61 | DAPAT_CYAP7 | 2, ., 6, ., 1, ., 8, 3 | 0.4689 | 0.8911 | 0.9562 | yes | no |
| Q39Z65 | DAPAT_GEOMG | 2, ., 6, ., 1, ., 8, 3 | 0.4619 | 0.9002 | 0.9682 | yes | no |
| A5GD93 | DAPAT_GEOUR | 2, ., 6, ., 1, ., 8, 3 | 0.4545 | 0.9002 | 0.9682 | yes | no |
| A9KJ19 | DAPAT_CLOPH | 2, ., 6, ., 1, ., 8, 3 | 0.4378 | 0.8979 | 0.9801 | yes | no |
| B7JVL5 | DAPAT_CYAP8 | 2, ., 6, ., 1, ., 8, 3 | 0.4516 | 0.8911 | 0.9562 | yes | no |
| Q18T09 | DAPAT_DESHD | 2, ., 6, ., 1, ., 8, 3 | 0.4207 | 0.8956 | 0.9610 | yes | no |
| A2BYM6 | DAPAT_PROM5 | 2, ., 6, ., 1, ., 8, 3 | 0.4313 | 0.9024 | 0.9754 | yes | no |
| Q04YV8 | DAPAT_LEPBL | 2, ., 6, ., 1, ., 8, 3 | 0.4466 | 0.8911 | 0.9632 | yes | no |
| A3PEY9 | DAPAT_PROM0 | 2, ., 6, ., 1, ., 8, 3 | 0.4209 | 0.8956 | 0.9681 | yes | no |
| Q10ZC3 | DAPAT_TRIEI | 2, ., 6, ., 1, ., 8, 3 | 0.4615 | 0.8911 | 0.9562 | yes | no |
| Q72NJ3 | DAPAT_LEPIC | 2, ., 6, ., 1, ., 8, 3 | 0.4581 | 0.8979 | 0.9705 | yes | no |
| B2J2U3 | DAPAT_NOSP7 | 2, ., 6, ., 1, ., 8, 3 | 0.4615 | 0.8911 | 0.9562 | yes | no |
| A6L7E4 | DAPAT_BACV8 | 2, ., 6, ., 1, ., 8, 3 | 0.4422 | 0.8979 | 0.9682 | yes | no |
| Q3AW44 | DAPAT_SYNS9 | 2, ., 6, ., 1, ., 8, 3 | 0.4400 | 0.9047 | 0.9779 | yes | no |
| Q74GT3 | DAPAT_GEOSL | 2, ., 6, ., 1, ., 8, 3 | 0.4663 | 0.8866 | 0.9536 | yes | no |
| Q6MDE0 | DAPAT_PARUW | 2, ., 6, ., 1, ., 8, 3 | 0.5483 | 0.9092 | 0.9756 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.976 |
| 4th Layer | 4.4.1.8 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.6.1.83 | 0.991 |
| 4th Layer | 2.6.1.9 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_Genewise1_v1.C_LG_II0973 | hypothetical protein (397 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.XVI.3802.1 | diaminopimelate epimerase (EC-5.1.1.7) (281 aa) | • | • | • | 0.945 | |||||
 | estExt_Genewise1_v1.C_LG_VI1708 | diaminopimelate epimerase (EC-5.1.1.7) (314 aa) | • | • | • | 0.936 | |||||
 | estExt_fgenesh4_pm.C_LG_XV0419 | hypothetical protein (301 aa) | • | • | 0.906 | ||||||
 | estExt_Genewise1_v1.C_1700073 | dihydrodipicolinate reductase (EC-1.3.1.26) (283 aa) | • | 0.901 | |||||||
 | gw1.8576.1.1 | Predicted protein (207 aa) | • | • | • | 0.452 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 441 | |||
| PRK07590 | 409 | PRK07590, PRK07590, L,L-diaminopimelate aminotrans | 0.0 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 0.0 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 2e-84 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 4e-80 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 7e-50 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 2e-49 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 2e-44 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 2e-39 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 6e-37 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 2e-36 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 2e-34 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 2e-32 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 1e-31 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 1e-30 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 3e-30 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 3e-30 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 3e-27 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 1e-26 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 4e-25 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 5e-25 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 5e-25 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 2e-24 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 2e-23 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 7e-23 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 4e-22 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 6e-22 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 5e-21 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 6e-21 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 1e-20 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 3e-20 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 8e-20 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 1e-19 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 6e-17 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 2e-16 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 3e-16 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 2e-15 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 2e-15 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 1e-14 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 2e-13 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 2e-13 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 2e-13 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 6e-13 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 7e-13 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 2e-12 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 3e-12 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 7e-12 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 9e-12 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 1e-11 | |
| PRK03321 | 352 | PRK03321, PRK03321, putative aminotransferase; Pro | 1e-11 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 2e-11 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 3e-11 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 4e-11 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 5e-11 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 6e-11 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 1e-10 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 3e-10 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 3e-10 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 4e-10 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 4e-10 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 7e-10 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 1e-09 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 2e-09 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 2e-09 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 7e-09 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 2e-08 | |
| PRK03317 | 368 | PRK03317, PRK03317, histidinol-phosphate aminotran | 3e-08 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 3e-08 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 1e-07 | |
| PRK09105 | 370 | PRK09105, PRK09105, putative aminotransferase; Pro | 2e-07 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 4e-07 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 4e-07 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 6e-07 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 7e-07 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 2e-06 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 4e-06 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 6e-06 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 1e-05 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 3e-05 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 4e-05 | |
| PRK08153 | 369 | PRK08153, PRK08153, histidinol-phosphate aminotran | 1e-04 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 2e-04 | |
| PRK04635 | 354 | PRK04635, PRK04635, histidinol-phosphate aminotran | 5e-04 | |
| PRK04781 | 364 | PRK04781, PRK04781, histidinol-phosphate aminotran | 5e-04 | |
| PRK05664 | 330 | PRK05664, PRK05664, threonine-phosphate decarboxyl | 5e-04 | |
| PTZ00376 | 404 | PTZ00376, PTZ00376, aspartate aminotransferase; Pr | 0.001 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 0.002 | |
| PRK04870 | 356 | PRK04870, PRK04870, histidinol-phosphate aminotran | 0.002 | |
| PRK14808 | 335 | PRK14808, PRK14808, histidinol-phosphate aminotran | 0.002 |
| >gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 559 bits (1443), Expect = 0.0
Identities = 198/410 (48%), Positives = 265/410 (64%), Gaps = 10/410 (2%)
Query: 40 VSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAF 99
N N L++GYLFPEI+ R + +P+A++IRLGIGD TQP+P + AM +
Sbjct: 2 AKINENYLKLKAGYLFPEIARRVNAFREANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVD 61
Query: 100 ALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQSDISRLQMLLGS 157
+ T + ++GYG EQG LR IA+ Y+ G I DEIFISDGA+ D + + G
Sbjct: 62 EMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILDIFGP 121
Query: 158 NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDI 217
+ T+AV DP +P Y+DT+V+ G+ G+ E G+Y IVY+ C ENNF P+L + DI
Sbjct: 122 DNTIAVTDPVYPVYVDTNVMAGRTGEA-NEDGRYSGIVYLPCTAENNFVPELPEE-KVDI 179
Query: 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGARE 276
I+ C PNNPTG T +QLK V++AK NGS+I++D+AY A+I+DPS P SIYEI GARE
Sbjct: 180 IYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARE 239
Query: 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRY----SNGYPVIKDFNRIVCTCFNGASNIVQ 332
AIE SFSK AGFTG R +TVVP+EL+ G + +NR T FNG S IVQ
Sbjct: 240 CAIEFRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQ 299
Query: 333 AGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP-GSSSW 391
A SP+G ++ +IDYY ENAKII + +S G +V GG NAPY+WV+ P G SSW
Sbjct: 300 RAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAGFEVYGGVNAPYIWVKTPDGMSSW 359
Query: 392 DVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
D F ++L++ +++ PGSGFGP G + R+SAFG RE + EA R+K L
Sbjct: 360 DFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMERIKKAL 409
|
Length = 409 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 533 bits (1375), Expect = 0.0
Identities = 210/404 (51%), Positives = 279/404 (69%), Gaps = 4/404 (0%)
Query: 40 VSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAF 99
+ RN + L+S YLF EI+ R +E +K+P A +IRLGIGDTTQP+P + A
Sbjct: 1 MKRNPHFLKLKSSYLFSEINKRVAEFRKKNPSADIIRLGIGDTTQPLPASVIEAFHNAVD 60
Query: 100 ALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNV 159
L++ + ++GYG EQG LR AIA+ Y+ I+ +EIFISDGA+ D+ RLQ L G +
Sbjct: 61 ELASPETFRGYGPEQGYPFLREAIAENDYRGR-IDPEEIFISDGAKCDVFRLQSLFGPDN 119
Query: 160 TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIF 219
TVAVQDP +PAY+D++V+ G+AG L + G+Y I Y+ C ENNF P+L DII+
Sbjct: 120 TVAVQDPVYPAYLDSNVMAGRAG-VLDDDGRYSKITYLPCTAENNFIPELPEEPHIDIIY 178
Query: 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVA 278
CSPNNPTG T +QLK+LV++A +GS+I++D+AY+A+I+DPS P SI+EIPGAR A
Sbjct: 179 LCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGARFCA 238
Query: 279 IEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLAC 338
IE SFSK AGFTGVRLGWTVVP+EL Y++G+ VI+D+ R CT FNGAS VQ A
Sbjct: 239 IEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAG 298
Query: 339 LSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP-GSSSWDVFAEI 397
+ +G Q + I YY ENA+I+ A ++ G KV GG++APY+WV+ P G SSWD F +
Sbjct: 299 YAGEGLQPILEAISYYMENARILRKALEAAGFKVYGGEHAPYLWVKTPEGISSWDFFDFL 358
Query: 398 LEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
L + H++ PGSGFGP G +R SAFG RE I EAC R+K L
Sbjct: 359 LYEYHVVGTPGSGFGPSGEGFVRFSAFGKRENIIEACERIKEAL 402
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 263 bits (675), Expect = 2e-84
Identities = 121/405 (29%), Positives = 189/405 (46%), Gaps = 41/405 (10%)
Query: 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA 112
Y F ++ ++ K + +I L IG+ P P+ I A E +G Y
Sbjct: 10 YTFAVLAEAKAAAELKGKED-VIDLSIGEPDFPTPEHIIEAAIEAL-----EEGGTHYTP 63
Query: 113 EQGNMALRTAIADKFYKDMGIEGD---EIFISDGAQSDISRLQMLLGSNV-TVAVQDPSF 168
G LR AIA+K+ + G++ D EI ++ GA+ + + L + V + DP +
Sbjct: 64 SAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGY 123
Query: 169 PAYIDTSVIVGQAGKFLKETGKYRNIVYMNCR-PENNFFPDLST-----TSRTDIIFFCS 222
P+Y + G GK V + EN F PDL T +T I S
Sbjct: 124 PSYEAAVKLAG---------GK---PVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNS 171
Query: 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEI 281
PNNPTG + ++LK +VE A+ + II+ D Y + D + SI E+ GAR+ I I
Sbjct: 172 PNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITI 231
Query: 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS- 340
+SFSK G TG R+GW V P E +I ++ + A Q +A L+
Sbjct: 232 NSFSKTYGMTGWRIGWVVGPPEE-------LIAALRKLKSYLTSCAPTPAQYAAIAALNG 284
Query: 341 PDGFQALRTVIDYYKENAKIIVDAF-QSLGLKVNGG-KNAPYVWVQFPGS-SSWDVFAEI 397
P + + + + Y+E ++V+A + GL V + A Y++ + P S + ++
Sbjct: 285 PQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSEEFAKKL 344
Query: 398 LEKTHILTIPGSGFG-PGGNEHIRVSAFGHREYISEACRRLKNFL 441
LE+ + +PGSGFG P G ++R+S E + EA RRL FL
Sbjct: 345 LEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFL 389
|
Length = 393 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 251 bits (642), Expect = 4e-80
Identities = 106/373 (28%), Positives = 171/373 (45%), Gaps = 33/373 (8%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG-- 132
I L IG+ P P + A+A A G GY + G LR AIA+ + G
Sbjct: 1 IDLSIGEPDFPPPPEVLEALAAAALR----AGLLGYYPDPGLPELREAIAEWLGRRGGVD 56
Query: 133 IEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191
+ +EI +++GAQ +S L + LL V V DP++P Y AG
Sbjct: 57 VPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEA---AARLAG--------- 104
Query: 192 RNIVYMNCRPENNFFPD-----LSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKAN 246
+V + E F D + T +T +++ +PNNPTG + ++L++L E AK +
Sbjct: 105 AEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKH 164
Query: 247 GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306
G +I+ D AYA + D P + A E I + SFSK G G+R+G+ + P E
Sbjct: 165 GILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEE-- 222
Query: 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366
+++ +++ +G S + QA A L DG + L + + Y+ +++A +
Sbjct: 223 -----LLERLKKLLPYTTSGPSTLSQAAAAAALD-DGEEHLEELRERYRRRRDALLEALK 276
Query: 367 SLG-LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG 425
LG L V ++W+ P + +L + ++ PGS FG GG +R+S
Sbjct: 277 ELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFAT 336
Query: 426 HREYISEACRRLK 438
E + EA RL
Sbjct: 337 PEEELEEALERLA 349
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 7e-50
Identities = 121/401 (30%), Positives = 187/401 (46%), Gaps = 44/401 (10%)
Query: 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA 112
YLF EI +++E I + D +I LGIGD P PD I AM + + Y +
Sbjct: 14 YLFAEIDKKKAEKIARGVD--VISLGIGDPDLPTPDHIIEAMCKAVEDPENHQ----YPS 67
Query: 113 EQGNMALRTAIADKFYKDMGIEGD---EIFISDGAQSDISRLQM-LLGSNVTVAVQDPSF 168
+G + R A+AD + + G+E D E+ G++ I+ + + + V V DP +
Sbjct: 68 YEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGY 127
Query: 169 PAY-IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS-----TTSRTDIIFFCS 222
P Y I T G+ +M + EN F PDL + ++F
Sbjct: 128 PVYKIGTIFAGGEP-------------YFMPLKEENGFLPDLDAIPEDVAKKAKLMFINY 174
Query: 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA-AYITDPSPRSIYEIPGAREVAIEI 281
PNNPTG A + +++V+FAK I+ +D+AY+ P S E+PGA++V IE
Sbjct: 175 PNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEF 234
Query: 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL-S 340
S SK TG R+G+ V +L I ++ +G +Q G+A L
Sbjct: 235 HSLSKTYNMTGWRIGFAVGNADL--------IAGLGKVKSNVDSGVFQAIQEAGIAALNG 286
Query: 341 PDGF-QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP-GSSSWDVFAEIL 398
P + LR + Y+E I+V+ + LGL+V K YVW P G +S + +L
Sbjct: 287 PQEVVEELRKI---YQERRDILVEGLRKLGLEVEPPKATFYVWAPVPKGYTSAEFATLLL 343
Query: 399 EKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439
+K ++ PG+GFG G + R++ E I EA R+K
Sbjct: 344 DKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK 384
|
Length = 385 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 2e-49
Identities = 116/400 (29%), Positives = 183/400 (45%), Gaps = 40/400 (10%)
Query: 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA 112
YLF EI +++E + D +I LGIGD P P I A+ + A + Y +
Sbjct: 12 YLFAEIDKKKAEKKAEGVD--VISLGIGDPDLPTPKHIVEALCKAAENPENHR----YPS 65
Query: 113 EQGNMALRTAIADKFYKDMGIEGD---EIFISDGAQSDISRLQM-LLGSNVTVAVQDPSF 168
+G +A R A+AD + + G+E D E+ G++ I+ + + + V V DP +
Sbjct: 66 YEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGY 125
Query: 169 PAYIDTSVIVGQAGKFLKETGKYRNIVY-MNCRPENNFFPDL-----STTSRTDIIFFCS 222
P Y ++ G Y M + EN F PD + ++F
Sbjct: 126 PVYRIGTLFAG-------------GEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINY 172
Query: 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-PSPRSIYEIPGAREVAIEI 281
PNNPTG A + K+LVEFAK I+ +D+AY+ D S E+ GA++V IE
Sbjct: 173 PNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEF 232
Query: 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP 341
S SK TG R+G V +L I ++ +G +Q +A L+
Sbjct: 233 HSLSKTYNMTGWRIGMAVGNADL--------IAGLGKVKTNVDSGVFQAIQYAAIAALN- 283
Query: 342 DGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP-GSSSWDVFAEILEK 400
++ + Y+ ++++A + +G+ V K YVWV P G +S + A +LE+
Sbjct: 284 GPQDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPEGYTSAEFAARLLEE 343
Query: 401 THILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440
T ++ PG GFG G +IR+S E + EA R+K
Sbjct: 344 TGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKKL 383
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 2e-44
Identities = 100/386 (25%), Positives = 167/386 (43%), Gaps = 49/386 (12%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE 134
I LG G+ P+ I A E AL G Y G LR AIA K +D G++
Sbjct: 34 ISLGAGEPDFDTPEHIKEAAIE---ALD--DGKTKYTPAAGIPELREAIAAKLKRDNGLD 88
Query: 135 --GDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191
++ ++ GA Q+ + LL V + P + +Y + +V AG G
Sbjct: 89 YDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPE---MVKLAG------GV- 138
Query: 192 RNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKAN 246
V++ EN F + T +T + SP+NPTG + ++L+ + + A +
Sbjct: 139 --PVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEH 196
Query: 247 GSIIVYDSAYAAYITD----PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302
++ D Y + D S S+ P R+ I ++ FSK TG RLG+ P+
Sbjct: 197 DIWVLSDEIYEKLVYDGAEFTSIASL--SPELRDRTITVNGFSKAYAMTGWRLGYAAGPK 254
Query: 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV 362
EL IK +++ + ++I Q +A L+ + + ++E ++V
Sbjct: 255 EL--------IKAMSKLQSHSTSNPTSIAQYAAVAALNGP-QDEVEEMRQAFEERRDLMV 305
Query: 363 DAFQSL-GLKVNGGKNAPYVWV---QFPGSSSWDV--FAE-ILEKTHILTIPGSGFGPGG 415
D + GL+ + A YV+ + G S D FAE +LE+ + +PG FG G
Sbjct: 306 DGLNEIPGLECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPG 365
Query: 416 NEHIRVSAFGHREYISEACRRLKNFL 441
++R+S E + E R++ FL
Sbjct: 366 --YVRLSYATSLEDLEEGLERIERFL 389
|
Length = 393 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 2e-39
Identities = 110/382 (28%), Positives = 171/382 (44%), Gaps = 46/382 (12%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD-MG 132
+I LG G+ QP P+ I A+ E A + K Y +G L+ A AD FYK G
Sbjct: 34 VINLGQGNPDQPTPEHIVEALQEAAENPANHK----YSPFRGYPFLKEAAAD-FYKREYG 88
Query: 133 IEGD---EIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKET 188
+ D E+ I G ++ + L Q L+ T+ V DP +P Y+ + V + +A
Sbjct: 89 VTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYL-SGVALARA------- 140
Query: 189 GKYRNIVYMNCRPENNFFPDLS-----TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFA 243
M ENNF PD + + +++ PNNPTG AT ++ V FA
Sbjct: 141 ----QFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFA 196
Query: 244 KANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302
K + +V+D AY A D P S + PGA++V IE+ + SK G R+ + V E
Sbjct: 197 KKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNE 256
Query: 303 ELRYSNGYPVIKDFNRI----VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENA 358
VI+ N + + F I A A LS + ++ Y+
Sbjct: 257 S--------VIEAINLLQDHLFVSLFGA---IQDAAIEALLSDQ--SCVAELVARYESRR 303
Query: 359 KIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEI-LEKTHILTIPGSGFGPGGNE 417
+ A + +G +V+ K + + W+ P + + FA++ LEK H+ PG+GFG G
Sbjct: 304 NAFISACREIGWEVDAPKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEG 363
Query: 418 HIRVSAFGHREYISEACRRLKN 439
++RV E + EA R+
Sbjct: 364 YVRVGLLTDEERLREAVERIGK 385
|
Length = 389 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 6e-37
Identities = 84/381 (22%), Positives = 144/381 (37%), Gaps = 43/381 (11%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI 133
I LG + + + AL+ YG G LR A+A + +
Sbjct: 3 KINLGSNEYLGDSGTLP-AVAKAEKDALAG-GTRNLYGPTDGLPELREALAKFLGRSPVL 60
Query: 134 EGD---EIFISDGAQSDISRLQMLLGSN--VTVAVQDPSFPAYIDTSVIVGQAGKFLKET 188
+ D + GA ++I L LL N + V P++P+YI I AG
Sbjct: 61 KLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIR---IFRLAG------ 111
Query: 189 GKYRNIVYMNCRPENNFFPDL--------STTSRTDIIFFCSPNNPTGHAATWQQLKKLV 240
+V N+F D T ++ SP+NPTG AT ++L+KL+
Sbjct: 112 ---GEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLL 168
Query: 241 EFAKANGSIIVYDSAYAAY-ITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299
+ AK + +++ D AYA + + + + + SFSK G G R+G+ +
Sbjct: 169 DLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYIL 228
Query: 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYKEN 357
+ ++ R + S +QA A LS L + KE
Sbjct: 229 GNAAVISQ-----LRKLARPFYS-----STHLQAAAAAALSDPLLVASELEEMRQRIKER 278
Query: 358 AKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNE 417
+ D ++ GL V + ++ ++ + +LE+ + PGS F GG
Sbjct: 279 RDYLRDGLEAAGLSVLPSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTPGSSF--GGPG 336
Query: 418 HIRVSAFGH-REYISEACRRL 437
+R++ G E + E +
Sbjct: 337 WLRITVAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 110/389 (28%), Positives = 165/389 (42%), Gaps = 57/389 (14%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI 133
+I LG+G+ PD +T A S +GY Y A G + LR IA K +
Sbjct: 22 VISLGVGE-----PDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAV 76
Query: 134 E---GDEIFISDGAQS--DISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKET 188
DEI ++ GA D++ ++ ++ V + +PSF +Y + +V AG
Sbjct: 77 SYDPNDEIIVTVGASQALDVA-MRAIINPGDEVLIVEPSFVSY---APLVTLAG------ 126
Query: 189 GKYRNIVYMNCRPENNFFPD-----LSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFA 243
G V + EN F + T++T I CSPNNPTG +L+++
Sbjct: 127 GV---PVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIV 183
Query: 244 KANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303
+ + I++ D YA D + S I G RE I IS FSK TG RLG+ P
Sbjct: 184 EKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVY 243
Query: 304 LR--------YSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYK 355
YS ++C A + Q L L G + + D Y+
Sbjct: 244 FSEAMLKIHQYS-----------MMC-----APTMAQFAALEALR-AGNDDVIRMRDSYR 286
Query: 356 ENAKIIVDAFQSLGLKVNGGKNAPYVW--VQFPGSSSWDVFAE-ILEKTHILTIPGSGFG 412
+ V +F +GL + A Y + + G SS + FAE +L + + +PGS FG
Sbjct: 287 KRRNFFVTSFNEIGLTCHVPGGAFYAFPSISSTGLSS-EEFAEQLLLEEKVAVVPGSVFG 345
Query: 413 PGGNEHIRVSAFGHREYISEACRRLKNFL 441
G IR S E + EA +R+K F+
Sbjct: 346 ESGEGFIRCSYATSLEQLQEAMKRMKRFV 374
|
Length = 378 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 99/406 (24%), Positives = 175/406 (43%), Gaps = 42/406 (10%)
Query: 46 MESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK 105
M++ QS +F E+ + E + ++I L IG+ P D + M A + +
Sbjct: 9 MKAFQSS-IFSELGAYKKE--KIAAGHKMIDLSIGNPDMPPADFVREEMVHTA---NQKE 62
Query: 106 GYKGYGAEQGNMALRTAIADKFYKDMGIEGD---EIFISDGAQSDISRLQMLLGS-NVTV 161
Y GY G A+ + + + + E+ + G+Q + L M+ + +
Sbjct: 63 SY-GY-TLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDII 120
Query: 162 AVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTD 216
V DP + AY +T + + A + YM + EN+F PDL +
Sbjct: 121 LVPDPGYTAY-ETGIQMAGATSY-----------YMPLKKENDFLPDLELIPEEIADKAK 168
Query: 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-PSPRSIYEIPGAR 275
++ P NP A K+++ FAK + I+V+D AYA + D P S +PGA+
Sbjct: 169 MMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAK 228
Query: 276 EVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGG 335
EV +EI+S SK G R+G+ + EE +++ + G +Q
Sbjct: 229 EVGVEINSLSKSYSLAGSRIGYMIGNEE--------IVRALTQFKSNTDYGVFLPIQKAA 280
Query: 336 LACLS-PDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP-GSSSWDV 393
A L F I Y+E +VD F++ G V+ + +VW + P G +S
Sbjct: 281 CAALRNGAAFCEKNRGI--YQERRDTLVDGFRTFGWNVDKPAGSMFVWAEIPKGWTSLSF 338
Query: 394 FAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439
++++ +++ PG FGP G +R++ E + +A ++N
Sbjct: 339 AYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN 384
|
Length = 399 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 108/381 (28%), Positives = 176/381 (46%), Gaps = 40/381 (10%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIAD---KFYKD 130
+I LGIG+ P I A A+ A +G+ Y G LR AIA+ KFY
Sbjct: 35 VISLGIGEPDFDTPKNIKEA-AKRALD----EGWTHYTPNAGIPELREAIAEYYKKFYG- 88
Query: 131 MGIEGDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189
+ ++ D + ++ GA ++ + LL V + DP+F Y++ + I +A
Sbjct: 89 VDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKI-AEAK------- 140
Query: 190 KYRNIVYMNCRPENNFFPDLS-----TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAK 244
+ + R EN F PD T RT +I PNNPTG + K + + A+
Sbjct: 141 ----PIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAE 196
Query: 245 ANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304
I+ D Y ++ + + + I A + I +SFSK TG RLG+ + PE+
Sbjct: 197 DYNIYILSDEPYEHFLYEGA-KHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQ- 254
Query: 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL-SPDGFQALRTVIDYYKENAKIIVD 363
VIKD ++ ++ VQ G+ L S + ++A+ + Y E K+++
Sbjct: 255 -------VIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLK 307
Query: 364 AFQSL-GLKVNGGKNAPYVWVQFPGSS-SWDVFAE-ILEKTHILTIPGSGFGPGGNEHIR 420
+ + +KV K A YV+ + S + FAE +LEK ++ IPG+ FG G +IR
Sbjct: 308 RLKEMPHIKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIR 367
Query: 421 VSAFGHREYISEACRRLKNFL 441
+S +E + EA R++ L
Sbjct: 368 ISYATSKEKLIEAMERMEKAL 388
|
Length = 391 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-31
Identities = 112/414 (27%), Positives = 175/414 (42%), Gaps = 62/414 (14%)
Query: 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA 112
Y F +I + KHPD LI +G+G+ + + + + E A +GY A
Sbjct: 25 YKFEKIKRAKRAAKEKHPDMELIDMGVGEPDEMADESVVEVLCEEA-KKPENRGY----A 79
Query: 113 EQGNMALRTAIADKFYKDMGIEG----DEIFISDGAQSDISRLQMLL---GSNVTVAVQD 165
+ G + A A K G++ E+ S G++ ++ L G + V
Sbjct: 80 DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTV-- 137
Query: 166 PSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTS-----RTDIIFF 220
P +P + G K+ G+ N + ENNF PDL + + +++
Sbjct: 138 PGYP-------VTGTHTKYYG--GEVYN---LPLLEENNFLPDLDSIPKDIKEKAKLLYL 185
Query: 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIE 280
PNNPTG AT + +++V+FAK N I+V D+AYAA D P S +PGA+EV +E
Sbjct: 186 NYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVE 245
Query: 281 ISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS 340
I S SK TG RL + V E + + +KD N +G +Q G+ L
Sbjct: 246 IHSLSKAYNMTGWRLAFVVGNELI--VKAFATVKDNND------SGQFIAIQKAGIYALD 297
Query: 341 -PDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP-GSSSWDVF--AE 396
P+ + +R Y +V +G K Y++V+ P G+ S F AE
Sbjct: 298 HPEITEKIRE---KYSRRLDKLVKILNEVGFKAEMPGGTFYLYVKAPKGTKSGIKFENAE 354
Query: 397 -----ILEKTHILTIPGSGFGPGGNEHIRVS----AFGHRE---YISEACRRLK 438
++++ I T+P G +R S A E + E RRL
Sbjct: 355 EFSQYLIKEKLISTVPWDDAGH----FLRFSVTFEAKDEEEEDRILEEIKRRLS 404
|
Length = 410 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 107/392 (27%), Positives = 158/392 (40%), Gaps = 60/392 (15%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI 133
+I +GIG+ PD A A + +G Y + G LR AIA + + G+
Sbjct: 32 IIHMGIGE-----PDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGL 86
Query: 134 EGD--EIFISDGAQSDISRLQM----LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE 187
+ I ++ GA + L + L+ V + DPS+P V A
Sbjct: 87 DVAPERIVVTAGASA---ALLLACLALVERGDEVLMPDPSYPC---NRHFVAAAE----- 135
Query: 188 TGKYRNIVYMNCRPENNFFPDLST-------TSRTDIIFFCSPNNPTGHAATWQQLKKLV 240
G+ + P F L+ RT + SP+NPTG + +L+++V
Sbjct: 136 -GRPVLV---PSGPAERF--QLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIV 189
Query: 241 EFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300
E +A G + D Y D +P S + + I I+SFSK+ TG RLGW VV
Sbjct: 190 EAVRARGGFTIVDEIYQGLSYDAAPVSALSLG---DDVITINSFSKYFNMTGWRLGWLVV 246
Query: 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKI 360
PE L + F ++ F AS + Q LAC PD +K
Sbjct: 247 PEAL--------VGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDF 298
Query: 361 IVDAFQSLGLKV----NGGKNAPYVW-----VQFPG-SSSWDVFAEILEKTHILTIPGSG 410
IV A +SLG KV +G A YV+ V P S + +L ++ +PG
Sbjct: 299 IVPALESLGFKVPVMPDG---AFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRD 355
Query: 411 FGP-GGNEHIRVSAFGHREYISEACRRLKNFL 441
FGP ++IR+S + EA RL
Sbjct: 356 FGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387
|
Length = 388 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 105/379 (27%), Positives = 174/379 (45%), Gaps = 42/379 (11%)
Query: 74 LIRLGIGDTTQPIPD-IITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG 132
LI LG+G+ P +I +A+A A A GY + +G + R AI D +++ G
Sbjct: 37 LIDLGMGNPDGAAPQPVIEAAIA--ALADPQNHGYPPF---EGTASFRQAITDWYHRRYG 91
Query: 133 IEGD---EIFISDGAQSDISRLQM-LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKET 188
+E D E G++ ++ L + + V V P++PA+ +I G
Sbjct: 92 VELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGA-------- 143
Query: 189 GKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFA 243
I + +PEN++ DLS+ + I++F P+NPT A + +++V FA
Sbjct: 144 ----QIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFA 199
Query: 244 KANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302
+ ++V+D YA D P S+ EIPGA+++ +E + SK G R+G+ V
Sbjct: 200 RKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVV--- 256
Query: 303 ELRYSNGYPVIKDFNRIVCTCFN-GASNIVQAGGLACLS-PDGFQALRTVIDYYKENAKI 360
G I R + T + G + +Q L PD + L+ V + Y+
Sbjct: 257 ------GNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSY--LQQVQERYRTRRDF 308
Query: 361 IVDAFQSLGLKVNGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHI 419
++ LG + K Y+WV P G S D +L+KT ++ PG+ FG GG ++
Sbjct: 309 LIQGLGELGWNIPPTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYV 368
Query: 420 RVSAFGHREYISEACRRLK 438
R+S + + EA RLK
Sbjct: 369 RISLIADCDRLGEALDRLK 387
|
Length = 394 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-30
Identities = 70/316 (22%), Positives = 133/316 (42%), Gaps = 43/316 (13%)
Query: 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAY 171
+ LR A+A+ +Y ++ + + + +G+ I L + + TV + +P+F Y
Sbjct: 56 DPDYRELRAALAE-YYG--VVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMY 112
Query: 172 IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNP 226
+ AG + + P F DL +T ++F C+PNNP
Sbjct: 113 ---EIAAQLAGAEVVKV------------PLKEFRLDLDAILAAIRDKTKLVFLCNPNNP 157
Query: 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSK 286
TG ++L+ L+E A G ++V D AY + + S + I + +FSK
Sbjct: 158 TGTLLPREELRALLE-ALPEGGLVVIDEAYIEFSPESSLELLKY----PPNLIVLRTFSK 212
Query: 287 FAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA 346
G G+R+G+ + EL I N++ FN S+ A +A L +
Sbjct: 213 AFGLAGLRVGYAIANPEL--------IAALNKVR-PPFN-VSSPALAAAIAALRDADY-- 260
Query: 347 LRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTI 406
L ++ +E + + A ++LGL A +V V+ P + + + +L+K ++
Sbjct: 261 LEESVERIREERERLYAALKALGLFGVFPSQANFVLVRVPDAEAAALAEALLKKGILVRD 320
Query: 407 PGSGFGPGGNEHIRVS 422
S ++R++
Sbjct: 321 CSS--VGLLPGYLRIT 334
|
Length = 356 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 99/380 (26%), Positives = 163/380 (42%), Gaps = 41/380 (10%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI 133
+I +G+ P P I + E A T GY +G LR AI+ + +
Sbjct: 31 IIDFSMGNPDGPTPPHIVEKLCEVAQRPDT----HGYSTSRGIPRLRRAISRWYQDRYDV 86
Query: 134 EGD---EIFISDGAQSDISRLQM-LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189
+ D E ++ G++ ++ L + L TV V +PS+P +I +VI G
Sbjct: 87 DIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGA--------- 137
Query: 190 KYRNIVYMNCRPENNFFPDLSTTSRTDI-----IFFCSPNNPTGHAATWQQLKKLVEFAK 244
+ + +FF +L R + P+NPT + +K+V AK
Sbjct: 138 ---QVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAK 194
Query: 245 ANGSIIVYDSAYAAYITD--PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302
++V+D AYA + D +P SI ++PGA++VA+E + SK G R+G+ V
Sbjct: 195 RYDVLVVHDLAYADIVYDGWKAP-SIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNP 253
Query: 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV 362
EL + RI G +Q +A L D Q +R + + YK ++V
Sbjct: 254 EL--------VSALARIKSYHDYGTFTPLQVAAIAALEGDQ-QCVRDIAEQYKRRRDVLV 304
Query: 363 DAFQSLGLKVNGGKNAPYVWVQFPGS----SSWDVFAEILEKTHILTIPGSGFGPGGNEH 418
G V K + YVW + P S + ++L + + PG GFG G+ H
Sbjct: 305 KGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTH 364
Query: 419 IRVSAFGHREYISEACRRLK 438
+R + +R+ I +A R +K
Sbjct: 365 VRFALIENRDRIRQAIRGIK 384
|
Length = 395 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-26
Identities = 99/388 (25%), Positives = 164/388 (42%), Gaps = 47/388 (12%)
Query: 67 RKHPDARLIRLGIGDTTQPIPDIIT-SAMAEHAFALSTVKGYKGYGAEQGNMALRTAIAD 125
+K PD +I L +GD PD+IT ++ AF KG+ Y G++ L I
Sbjct: 26 KKFPD--IIDLSLGD-----PDLITDESIINAAFE-DAKKGHTRYTDSGGDVELIEEII- 76
Query: 126 KFYK---DMGIEGDEIFISDGAQSDIS-RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQA 181
K+Y D+ + +EI + GA + LQ +L V + +P F Y D +VG
Sbjct: 77 KYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVG-- 134
Query: 182 GKFLKETGKYRNIVYMNCRPENNFFPDL-----STTSRTDIIFFCSPNNPTGHAATWQQL 236
GK + + E+ F ++ TS+T I SPNNPTG + + L
Sbjct: 135 GKP----------IILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETL 184
Query: 237 KKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296
+++ + A I+ D Y + + + G E I SFSK TG R+G
Sbjct: 185 EEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIG 244
Query: 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS-PDGFQALRTVIDYYK 355
+ + P+ Y K N +C A I Q + L D L + + ++
Sbjct: 245 YVIAPD---YIIE--TAKIINEGICF---SAPTISQRAAIYALKHRDTIVPL--IKEEFQ 294
Query: 356 ENAKIIVDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGF 411
+ + +S+ G A ++ ++ G SS + ++L++ H+L IPG F
Sbjct: 295 KRLEYAYKRIESIPNLSLHPPKGSIYA-FINIKKTGLSSVEFCEKLLKEAHVLVIPGKAF 353
Query: 412 GPGGNEHIRVSAFGHREYISEACRRLKN 439
G G +IR++ E + EA R++
Sbjct: 354 GESGEGYIRLACTVGIEVLEEAFNRIEK 381
|
Length = 384 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-25
Identities = 101/389 (25%), Positives = 169/389 (43%), Gaps = 49/389 (12%)
Query: 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDM 131
A +I LG+G+ P P I + E A T Y A +G LR A A + +
Sbjct: 30 ADIIDLGMGNPDLPTPQHIVDKLCETAQDPRT----HRYSASKGIPGLRRAQAAYYARRF 85
Query: 132 GIEGD---EIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE 187
G++ + ++ + G++ + + Q + + +PS+P + A F+
Sbjct: 86 GVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIH---------AFGFIMA 136
Query: 188 TGKYRNIVYMNCRPENNFFPDLSTTSRTDI-----IFFCSPNNPTGHAATWQQLKKLVEF 242
G R++ P+ FFP L R I + P+NPT + A K +V F
Sbjct: 137 GGVIRSV---PAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAF 193
Query: 243 AKANGSIIVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301
AK + II+ D AY+ Y P S+ ++PGA++V +E +S SK G R+G+ V
Sbjct: 194 AKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGN 253
Query: 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG--FQALRTVIDYYKENAK 359
E L I R+ GA +Q A L+ +R + YK+
Sbjct: 254 ERL--------IAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMREL---YKKRRD 302
Query: 360 IIVDAFQSLGLKVNGGKNAPYVWVQFP------GSSSWDVFAEIL-EKTHILTIPGSGFG 412
++V++F G + + + W P GS F+++L EK + PG GFG
Sbjct: 303 VLVESFGRAGWDIPPPAASMFAWAPIPEAFRHLGSLE---FSKLLVEKADVAVAPGVGFG 359
Query: 413 PGGNEHIRVSAFGHREYISEACRRLKNFL 441
G+ ++R++ + + I +A R +K FL
Sbjct: 360 EHGDGYVRIALVENEQRIRQAARNIKRFL 388
|
Length = 405 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 5e-25
Identities = 95/380 (25%), Positives = 151/380 (39%), Gaps = 49/380 (12%)
Query: 67 RKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADK 126
HPD ++ L +G P+P +I +A+A A A GY G LR AI D
Sbjct: 17 ASHPDG-IVDLSVGTPVDPVPPLIRAALAAAADA-------PGYPQTWGTPELREAIVDW 68
Query: 127 FYKDMGIEG---DEIFISDGAQSDISRLQMLLG--SNVTVAVQDPSFPAYIDTSVIVGQA 181
+ G+ G + G + ++ L LLG TV + + ++P Y +++ G
Sbjct: 69 LERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAG-- 126
Query: 182 GKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVE 241
P P D+I+ SP NPTG + +L+ +V
Sbjct: 127 -----------------ATPVAADDPTELDPVGPDLIWLNSPGNPTGRVLSVDELRAIVA 169
Query: 242 FAKANGSIIVYDSAYAAYITDPSPRSIYEIP----GAREVAIEISSFSKFAGFTGVRLGW 297
+A+ G+++ D Y + P SI + P G + + S SK + G R G+
Sbjct: 170 WARERGAVVASDECYLELGWEGRPVSILD-PRVCGGDHTGLLAVHSLSKRSNLAGYRAGF 228
Query: 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKEN 357
L + V K +V VQA +A L DG A + Y
Sbjct: 229 VAGDPAL-VAELLTVRKHAGLMV-------PAPVQAAMVAALGDDGHVAEQK--ARYAAR 278
Query: 358 AKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNE 417
+ A + G +++ + Y+W G +WD + E IL PG +GP G++
Sbjct: 279 RAQLKPALEKAGFRIDHSEAGLYLWAT-RGEDAWDTVDRLAELG-ILVAPGDFYGPAGSQ 336
Query: 418 HIRVSAFGHREYISEACRRL 437
H+RV+ E I+ A RL
Sbjct: 337 HVRVALTATDERIAAAVARL 356
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-25
Identities = 95/402 (23%), Positives = 146/402 (36%), Gaps = 55/402 (13%)
Query: 61 RESEHIRKHPDARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMAL 119
+ S+ D +I G P YG G L
Sbjct: 78 KPSDPELLEDDPSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPEL 137
Query: 120 RTAIADKFYKDMGI--EGDEIFISDGAQS--DISRLQMLLGSNVTVAVQDPSFPAYIDTS 175
R AIA GI E ++I I+ GAQ D+ L++LL TV V+DP++P +
Sbjct: 138 REAIAAYLLARRGISCEPEQIVITSGAQQALDLL-LRLLLDPGDTVLVEDPTYPGALQ-- 194
Query: 176 VIVGQAGKFLKETGKYRNIVYMNCRP----ENNFFPD-LSTTSRTDII--FFCSPN--NP 226
+ G P E+ P+ L + +P NP
Sbjct: 195 -ALEALG--------------ARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNP 239
Query: 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS--IYEIPGAREVAIEISSF 284
TG + ++ K L+ A+ +I+ D Y D P R I + SF
Sbjct: 240 TGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGR--VIYLGSF 297
Query: 285 SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF 344
SK G+RLG+ V P EL I+ R+ G S++ QA A L +
Sbjct: 298 SKTL-APGLRLGYVVAPPEL--------IEKLLRLKQAADLGPSSLSQAALAAFLLSGHY 348
Query: 345 QA-LRTVIDYYKENAKIIVDAFQSL---GLKVNGGKNAPYVWVQFP-GSSSWDVFAEILE 399
LR + Y +++A + ++W++ P G + ++ A LE
Sbjct: 349 DRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGIDARELLAAALE 408
Query: 400 KTHILTIPGSGFGPGGNEH--IRVSAFGH--REYISEACRRL 437
K ++T GS F G+ +R+S F E I E +RL
Sbjct: 409 KGVVVTPLGSAFSADGDPRNGLRLS-FSSPSEEEIEEGIKRL 449
|
Length = 459 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 97/399 (24%), Positives = 164/399 (41%), Gaps = 44/399 (11%)
Query: 57 EIS-MRE-SEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQ 114
+IS +R+ S ++ + + LI L IG P P + A A+ A + Y Y
Sbjct: 13 QISGIRQFSNMVQNYDN--LISLTIGQPDFPTPSHVKEA-AKRAIT----ENYTSYTHNA 65
Query: 115 GNMALRTAIADKFYKDMGIEGD---EIFISDGAQS--DISRLQMLLGSNVTVAVQDPSFP 169
G + LR A + + EI ++ GA DI+ + +L V + P +P
Sbjct: 66 GLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIA-FRTILEPGTEVILPAPIYP 124
Query: 170 AYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF-----FPDLSTTSRTDIIFFCSPN 224
Y I+ G V+++ R F + + T +T + P+
Sbjct: 125 GY---EPIIRLCGA---------KPVFIDTRS-TGFRLTAEALENAITEKTRCVVLPYPS 171
Query: 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSF 284
NPTG + ++L+ + + K ++ D Y+ + + SI P RE I I+
Sbjct: 172 NPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGL 231
Query: 285 SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF 344
SK TG R+G+ P L I ++ TC AS+I Q L L+ G
Sbjct: 232 SKSHSMTGWRIGFLFAPSYLAKH-----ILKVHQYNVTC---ASSISQYAALEALT-AGK 282
Query: 345 QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP--GSSSWDVFAEILEKTH 402
+ + YK+ + + S+GL V A Y++ SS+D +++E+
Sbjct: 283 DDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGAFYLFPSIGHFTMSSFDFALDLVEEAG 342
Query: 403 ILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+ +PGS F G ++R+S E + E RL+ FL
Sbjct: 343 LAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFL 381
|
Length = 387 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 89/385 (23%), Positives = 158/385 (41%), Gaps = 45/385 (11%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI 133
LI L +G + P P A+A+ ST GY G + R A A + + G+
Sbjct: 32 LIDLSLGSSDLPAPAHALEAIAQSLHDPST----HGYLLFHGTLDFREAAAQWYEQRFGL 87
Query: 134 EGD---EIFISDGAQSDISRLQMLLGSNVTVA-VQDPSFPAYIDTSVIVGQAGKFLKETG 189
D E+ G+Q + L + + + A + DP +P++ AG G
Sbjct: 88 AVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSH---------AGGVYLAGG 138
Query: 190 KYRNIVYMNCRPENNFFPDLSTT-----SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAK 244
+ I M R EN+F P + ++ ++ P+NPT A ++ V F +
Sbjct: 139 Q---IYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQ 195
Query: 245 ANGSIIVYDSAYAAYITD--PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302
+ ++V+D Y + D P SI + + V+IE + SK G R+G+ +
Sbjct: 196 QHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNA 255
Query: 303 ELRYSNGYPVIKDFNRI-VCTCFNGASNIVQAGGLACL--SPDGFQALRTVIDYYKENAK 359
+L I+ ++ FN I+ G +A L Q + +++
Sbjct: 256 QL--------IQALRQVKAVVDFNQYRGILN-GAIAALTGPQATVQQTVQI---FRQRRD 303
Query: 360 IIVDAFQSLGLKVNGGKNAPYVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGPGGN 416
++A +G V + YVW + P +S + +++ +T + PGSGFG G
Sbjct: 304 AFINALHQIGWPVPLPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGE 363
Query: 417 EHIRVSAFGHREYISEACRRLKNFL 441
++R + + + EA R+ FL
Sbjct: 364 GYVRFALVHDPDILEEAVERIAAFL 388
|
Length = 388 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 7e-23
Identities = 94/377 (24%), Positives = 153/377 (40%), Gaps = 55/377 (14%)
Query: 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISD 142
P P + A+AE A YG +G LR A A + + G I +++ I+
Sbjct: 42 PPPPELLRALAE--AAADP--AAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITS 97
Query: 143 GA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP 201
G Q+ + + L G+ V + P Y + + + G VY+ C
Sbjct: 98 GCNQAFWAAMVTLAGAGDEVILPLP---WYFNHKMWLDMLGI---------RPVYLPCDE 145
Query: 202 ENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAY 256
PD + T RT I +PNNPTG + L +L + A+ +G ++ D Y
Sbjct: 146 GPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETY 205
Query: 257 AAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV-PEELRYSNGYPVIK 314
+ + +P ++ P + + + SFSK TG R+G V P + I+
Sbjct: 206 RDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAE------IE 259
Query: 315 DFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV---DAFQSLGLK 371
F V C A I Q L + D+ N I DAF+++ +
Sbjct: 260 KFMDTVAIC---APRIGQIAVAW--------GLPNLADWRAGNRAEIARRRDAFRAVFAR 308
Query: 372 VNG----GKNAPYVWVQ--FPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG 425
+ G A + +V+ FP S +V + ++ IL +PG+ FGPG ++R+ AF
Sbjct: 309 LPGWELLASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRL-AFA 367
Query: 426 H--REYISEACRRLKNF 440
+ I E RL+ F
Sbjct: 368 NADVAGIGELVERLRAF 384
|
Length = 386 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 4e-22
Identities = 100/383 (26%), Positives = 160/383 (41%), Gaps = 43/383 (11%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG- 132
++ L G++ P PD I A A AL+ G Y G LR A+A + G
Sbjct: 26 VLPLWFGESDLPTPDFIRDAAAA---ALA--DGETFYTHNLGIPELREALARYVSRLHGV 80
Query: 133 -IEGDEIFI-SDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGK 190
+ I + S G Q+ + Q L+G V P +P + I+G
Sbjct: 81 ATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGAR--------- 131
Query: 191 YRNIVYMNCRPENNFFP-DL-----STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAK 244
+V + + DL + T RT +F SPNNPTG A+ L+ ++ +
Sbjct: 132 ---VVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCR 188
Query: 245 ANGSIIVYDSAYAAYITDPSPR--SIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302
+G IV D Y P R S +I + I ++SFSK TG RLGW V P
Sbjct: 189 RHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPP 248
Query: 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV 362
L + +++ + + VQ +A L +G + ++ + + +V
Sbjct: 249 AL--------GQVLEKLIEYNTSCVAQFVQRAAVAALD-EGEDFVAELVARLRRSRDHLV 299
Query: 363 DAFQSL-GLKVNGGKNAPYVWVQFPGSSSWDVFA---EILEKTHILTIPGSGFGPGGNEH 418
DA ++L G++V A Y + + PG + D A ++++ + PG+ FGPGG
Sbjct: 300 DALRALPGVEVAKPDGAMYAFFRIPGVT--DSLALAKRLVDEAGLGLAPGTAFGPGGEGF 357
Query: 419 IRVSAFGHREYISEACRRLKNFL 441
+R + EA RL+ FL
Sbjct: 358 LRWCFARDPARLDEAVERLRRFL 380
|
Length = 382 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 6e-22
Identities = 94/372 (25%), Positives = 145/372 (38%), Gaps = 34/372 (9%)
Query: 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG 132
RL G GD +P P I A+ + V Y + G ALR AI+ F + G
Sbjct: 1 RLFDFGTGDPKEPTPPFIRKAL------IDAVPEVSQYPSALGTKALREAISGWFERRFG 54
Query: 133 IEGD---EIFISDGAQSDISRLQMLLGSNV----TVAVQDPSFPAYIDTSVIVGQAGKFL 185
++ D ++ S G++ I ++ V P +P Y ++ G +
Sbjct: 55 VKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAV 114
Query: 186 KETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA 245
K + ++ R E + S T I++ P+NPTG A LK+ + +
Sbjct: 115 KLKKEDGFLL----RLEK---VEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCRE 167
Query: 246 NGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305
+G I+ D Y P S E+ E + S SK +G TG R G+
Sbjct: 168 HGIILCSDECYTEIYFGEPPHSALEV--GIENVLAFHSLSKRSGMTGYRSGFVA------ 219
Query: 306 YSNGYPVIKDFNRIVCTCFNGAS-NIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDA 364
G + F R + F AS + VQA A S D R I +K + ++
Sbjct: 220 ---GDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKI--FKRKRDLFIEF 274
Query: 365 FQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF 424
F +GL+ Y+WV+ P +A L + I+ PG FG G ++RV+
Sbjct: 275 FNKVGLEYLYPDATFYLWVKVPSGIDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALV 334
Query: 425 GHREYISEACRR 436
E EA R
Sbjct: 335 PTLEECEEALRL 346
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 5e-21
Identities = 98/405 (24%), Positives = 179/405 (44%), Gaps = 38/405 (9%)
Query: 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA 112
Y+F E++ + R D +I +G+ P P I + E A T GY
Sbjct: 16 YVFAEVNELKMAARRAGED--IIDFSMGNPDGPTPQHIIDKLCESAQKPKT----HGYSV 69
Query: 113 EQGNMALRTAIADKFYKDMGIEGD---EIFISDGAQSDISRLQMLLGSNVTVA-VQDPSF 168
+G LR AI + + + ++ D E+ + G++ L + + VA V DP++
Sbjct: 70 SKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAY 129
Query: 169 PAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDI-----IFFCSP 223
P + ++ G G K +Y ++ E+ FF +L R + P
Sbjct: 130 PIHSQAFILAG--GNVHKMPLEYNEDFELD---EDQFFENLEKALRESSPKPKYVVVNFP 184
Query: 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD--PSPRSIYEIPGAREVAIEI 281
+NPT ++LV AK I+ D AYA D +P SI E+ GA++VA+E
Sbjct: 185 HNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTP-SILEVEGAKDVAVES 243
Query: 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP 341
+ SK G R+G+ V ++L + +I G +Q A ++
Sbjct: 244 YTLSKSYNMAGWRVGFVVGNKKL--------VGALKKIKSWLDYGMFTPIQVA--ATIAL 293
Query: 342 DGFQA-LRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS----SSWDVFAE 396
DG Q+ + + + Y++ +++++F + G ++ + + +VW + P S + +
Sbjct: 294 DGDQSCVEEIRETYRKRRDVLIESFANAGWELQKPRASMFVWAKIPEPARHLGSLEFSKQ 353
Query: 397 ILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+L + + PG GFG G+E++R++ + I +A R +K FL
Sbjct: 354 LLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKKFL 398
|
Length = 403 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 6e-21
Identities = 95/391 (24%), Positives = 149/391 (38%), Gaps = 71/391 (18%)
Query: 67 RKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADK 126
HPD ++ L +G P+P +I A+A A A GY G LR AI
Sbjct: 23 AAHPDG-IVDLSVGTPVDPVPPVIQEALAAAADA-------PGYPTTAGTPELREAIVGW 74
Query: 127 FYKDMGIEG---DEIFISDGAQSDISRLQMLLG--SNVTVAVQDPSFPAYIDTSVIVGQA 181
+ G+ G + G++ ++ L LLG V + + ++P Y + + G
Sbjct: 75 LARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAG-- 132
Query: 182 GKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVE 241
R +I+ SP+NPTG L+K+V
Sbjct: 133 -----------------ATVVRADSLTELGPQRPALIWLNSPSNPTGRVLGVDHLRKVVA 175
Query: 242 FAKANGSIIVYDSAYAAYITDPSPRSIYEIP----GAREVAIEISSFSKFAGFTGVRLGW 297
+A+ G+++ D Y D P SI + P G + + S SK + G R G+
Sbjct: 176 WARERGAVVASDECYLELGWDAEPVSILD-PRVCGGDHTGLLAVHSLSKQSNLAGYRAGF 234
Query: 298 -----TVVPE--ELRYSNG----YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA 346
+V E E+R G P VQA +A L D
Sbjct: 235 VAGDPALVAELLEVRKHAGMMVPAP-------------------VQAAMVAALGDDAHVR 275
Query: 347 LRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTI 406
+ + Y ++ A ++ G +V+ + Y+W G WD A + E+ IL
Sbjct: 276 EQR--ERYARRRAVLRPALEAAGFRVDHSEAGLYLWATR-GEDCWDTVAWLAERG-ILVA 331
Query: 407 PGSGFGPGGNEHIRVSAFGHREYISEACRRL 437
PG +GP G +H+RV+ E I+ A RL
Sbjct: 332 PGDFYGPAGAQHVRVALTATDERIAAAVERL 362
|
Length = 364 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 1e-20
Identities = 70/310 (22%), Positives = 135/310 (43%), Gaps = 41/310 (13%)
Query: 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDTSV 176
L+ A+AD + G++ ++I + +G+ I L + L V V P++ Y ++
Sbjct: 58 ELKQALADYY----GVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAK 113
Query: 177 IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQ 234
I G + + + D+ + ++F CSPNNPTG+ +
Sbjct: 114 IHG---------AEVVKVPLDEDGQLD--LEDILVAIDDKPKLVFLCSPNNPTGNLLSRS 162
Query: 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS-IYEIPGAREVAIEISSFSKFAGFTGV 293
++ ++E + ++V D AY + +PS + E P + + + + SK G G+
Sbjct: 163 DIEAVLERTPEDA-LVVVDEAYGEFSGEPSTLPLLAEYP---NLIV-LRTLSKAFGLAGL 217
Query: 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDY 353
R+G+ + E +I N+ V FN S + QA +A L D F + ++
Sbjct: 218 RIGYAIANAE--------IIDALNK-VRAPFN-LSRLAQAAAIAALRDDDF--IEKTVEE 265
Query: 354 YKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFG 412
+ + D + L GL+V A +V ++FP + +F +LEK I+ + +
Sbjct: 266 INAERERLYDGLKKLPGLEVYPSD-ANFVLIRFPRDAD-ALFEALLEKG-IIVRDLNSYP 322
Query: 413 PGGNEHIRVS 422
N +R++
Sbjct: 323 GLPN-CLRIT 331
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 3e-20
Identities = 99/404 (24%), Positives = 163/404 (40%), Gaps = 51/404 (12%)
Query: 57 EISM-RE-SEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQ 114
E+S+ R+ + I P +++L +G+ PD T + A + Y
Sbjct: 15 EVSLIRQFDQSISDIPG--ILKLTLGE-----PDFTTPDHVKEAAKRAIDANQSHYTGMA 67
Query: 115 GNMALRTAIADKFYKDMGIE---GDEIFISDGAQSDIS-RLQMLLGSNVTVAVQDPSFPA 170
G + LR A AD + ++ +EI ++ GA +S L +L V + P++P
Sbjct: 68 GLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPG 127
Query: 171 YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFF--PDLSTTSRTD------IIFFCS 222
Y +VG IV ++ EN+F P++ + + +
Sbjct: 128 YEPIVNLVGA------------EIVEIDTT-ENDFVLTPEMLEKAILEQGDKLKAVILNY 174
Query: 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA--AYITDPSPRSIYEIPGAREVAIE 280
P NPTG + +Q+K L + K ++ D Y+ Y T SI E + I
Sbjct: 175 PANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTY-TGEPHVSIAEY--LPDQTIL 231
Query: 281 ISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS 340
I+ SK TG R+G P E +IK +V A+ + Q + L+
Sbjct: 232 INGLSKSHAMTGWRIGLIFAPAEFTAQ----LIKSHQYLV----TAATTMAQFAAVEALT 283
Query: 341 PDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP---GSSSWDVFAEI 397
AL +Y K II + LG K+ A Y++ + P S+ +
Sbjct: 284 NGKDDALPMKKEYIKRRDYII-EKMTDLGFKIIKPDGAFYIFAKIPAGYNQDSFKFLQDF 342
Query: 398 LEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
K + IPG+ FGP G ++R+S E I EA +RLK ++
Sbjct: 343 ARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYM 386
|
Length = 391 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 8e-20
Identities = 100/378 (26%), Positives = 143/378 (37%), Gaps = 81/378 (21%)
Query: 79 IGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE--GD 136
+G+ + P P + A+ E A G GY G +R AIA+ + G D
Sbjct: 40 LGNPSVPPPAAVKEALRELA--EEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTAD 97
Query: 137 EIFISDGAQSDIS-RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIV 195
I ++ GA ++ L+ +L V V P F Y V G L V
Sbjct: 98 HIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYR---FYVDNHGGKLVV-------V 147
Query: 196 YMNCRPENNFFPDL-----STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEF-----AKA 245
+ + F PDL + T +T + SPNNPTG + + LK L +
Sbjct: 148 PTD---TDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEY 204
Query: 246 NGSI----------IVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295
I IVYD A YI SI + SFSK G R+
Sbjct: 205 GRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIV-----------VYSFSKSLSLPGERI 253
Query: 296 GWTVVPEELRYSNGYPVIKDF-------NRIVCTCFNGASNIVQAGGLACL--SPDGFQA 346
G+ V E+ D NRI F A ++Q CL + D
Sbjct: 254 GYIAVNPEM------EDADDLVAALVFANRI--LGFVNAPALMQRVVAKCLDATVD---- 301
Query: 347 LRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDV-FAEILEKTHILT 405
+ YK N ++ D LG + + A Y++ + P DV F E +K ++L
Sbjct: 302 ----VSIYKRNRDLLYDGLTELGFECVKPQGAFYLFPKSPEED--DVAFCEKAKKHNLLL 355
Query: 406 IPGSGFG-PGGNEHIRVS 422
+PGSGFG PG + R+S
Sbjct: 356 VPGSGFGCPG---YFRLS 370
|
Length = 394 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 105/438 (23%), Positives = 168/438 (38%), Gaps = 84/438 (19%)
Query: 43 NVNMESLQSGYLFPEISMRE-SEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFAL 101
N N+ LQ +P + + I L IG+ P P + A+ E+ L
Sbjct: 1 NPNLSRLQP---YPFEKLAALLAGVTPPASKPPIALSIGEPKHPTPAFVLEALRENLHGL 57
Query: 102 STVKGYKGYGAEQGNMALRTAIAD----KFYKDMGIEGD-EIFISDG--------AQSDI 148
ST Y +G LR AIA +F G++ + + +G AQ+ I
Sbjct: 58 ST------YPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVI 111
Query: 149 SRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD 208
+ Q L V + +P + Y + + ++ A ++NC EN F PD
Sbjct: 112 NPGQAPL-----VVMPNPFYQIY-EGAALLAGA-----------EPYFLNCTAENGFLPD 154
Query: 209 L-----STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP 263
S R ++F CSP NPTG + LKKL+E A G II D Y+ D
Sbjct: 155 FDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDE 214
Query: 264 SPRSIYEIPGAREVAIEI-----------SSFSKFAGFTGVRLGWTVVPEELRYSNGYPV 312
G + A ++ S SK + G+R G+ E+
Sbjct: 215 GNPP----AGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEI-------- 262
Query: 313 IKDFNRIVCTCFNGASNI-VQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLK 371
+K F R T A I Q +A + + Q +R Y+E +++ + L
Sbjct: 263 LKAFLRYR-TYHGCAMPIPTQLASIAAWNDE--QHVRENRALYREKFAAVLEILGQV-LD 318
Query: 372 VNGGKNAPYVWVQFPGSSSWDVFAEIL-EKTHILTIPGS-------GFGPGGNEHIRVSA 423
+ Y+W + PG + FA L E+ ++ +PG G PG +R++
Sbjct: 319 LELPDAGFYLWPKVPGDD--EAFARALYEEENVTVLPGRFLAREAEGVNPGEG-RVRIAL 375
Query: 424 FGHREYISEACRRLKNFL 441
E EA R+++F+
Sbjct: 376 VAPLEECVEAAERIRSFI 393
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 6e-17
Identities = 93/393 (23%), Positives = 154/393 (39%), Gaps = 55/393 (13%)
Query: 73 RLIRLGIGDTT----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFY 128
++IRL IGD QP P+ + A + +G+ YG +G LR AI +
Sbjct: 31 KVIRLNIGDPVKFDFQP-PEHMKEAYCR-----AIKEGHNYYGPSEGLPELREAIVKREK 84
Query: 129 KDMG--IEGDEIFISDGAQSDISRLQMLLGSNVT----VAVQDPSFPAYIDTSVIVGQAG 182
+ G I D++ ++ LQ++ G+ + + + PS+P Y G
Sbjct: 85 RKNGVDITPDDVRVTAAVTEA---LQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVP 141
Query: 183 KFLKETGKYRNIVYMNCRPENNFFPDLS-----TTSRTDIIFFCSPNNPTGHAATWQQLK 237
YR I E + PD+ T +T I +PNNPTG + LK
Sbjct: 142 VE------YRTI------EEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLK 189
Query: 238 KLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297
++++ A + ++ D Y + S + V I ++ SK TG RLG+
Sbjct: 190 EILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPV-IVMNGLSKVYFATGWRLGY 248
Query: 298 T--VVPEELRYSNGYPVIKDFNRI-VCTCFNGASNIVQAGGLACL--SPDGFQALRTVID 352
V PE + + I RI +C + Q +A L D + +
Sbjct: 249 IYFVDPEG-KLAEVREAIDKLARIRLCP-----NTPAQFAAIAGLTGPMDYLEEYMKKL- 301
Query: 353 YYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQF---PGSSSWDVFAEILEKTHILTIPG 408
KE I + G+ + A Y++ + P + ++L + H+L + G
Sbjct: 302 --KERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHG 359
Query: 409 SGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
SGFG G H R+ E + EA R + F+
Sbjct: 360 SGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFM 392
|
Length = 398 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 96/405 (23%), Positives = 163/405 (40%), Gaps = 67/405 (16%)
Query: 69 HPDARLIRLGIGDTTQPIPDIITSAMAEHAF--ALSTVKGYKGYGAEQGNMALRTAIADK 126
+P+ +I L GD + ++ T AE A AL + K + GY G +A R A+A+
Sbjct: 28 NPEKPVIPLSHGDPS-VFGNLRTDPEAEEAVKDALRSGK-FNGYAPSVGALAAREAVAEY 85
Query: 127 FYKDMG--IEGDEIFISDGAQSDISRLQMLL------GSNVTVAVQDPSFPAYIDTSVIV 178
D+ + D++ ++ G I ++ + G+N+ V P FP Y DT
Sbjct: 86 LSSDLPGKLTADDVVLTSGCSQAI---EICIEALANPGANILVP--RPGFPLY-DT---- 135
Query: 179 GQAGKFLKETGKYRNIV--YMNCRPENNFFPDLSTTS-----RTDIIFFCSPNNPTGHAA 231
+ + + PE ++ DL +T I +P+NP G
Sbjct: 136 ---------RAAFSGLEVRLYDLLPEKDWEIDLDGLESLADEKTVAIVVINPSNPCGSVF 186
Query: 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR---EV-AIEISSFSKF 287
+ L+K+ E A+ G I+ D Y + +P IP A V + + SK
Sbjct: 187 SRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAPF----IPMASFASIVPVLSLGGISKR 242
Query: 288 AGFTGVRLGWTVV--PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL--SPDG 343
G RLGW ++ P + +K+ + + G + IVQ L +P
Sbjct: 243 WVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRIL----GPATIVQGALPDILENTPQE 298
Query: 344 FQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQ-----FPG-SSSWDVFAE 396
F I K NA++ + + + GL + A Y+ V+ FP D +
Sbjct: 299 F--FDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEK 356
Query: 397 ILEKTHILTIPGSGFG-PGGNEHIRVSAFGHREYISEACRRLKNF 440
+ + ++ +PGS FG P +R++ + EAC R+K F
Sbjct: 357 LAREESVICLPGSAFGLPN---WVRITITVPESMLEEACSRIKEF 398
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-16
Identities = 107/425 (25%), Positives = 160/425 (37%), Gaps = 80/425 (18%)
Query: 56 PEIS-----MRESEHIRK-HPDA--------RLIRLGIGDTTQPIPDIIT-SAMAE--HA 98
+IS M S IRK P A ++ L IG PDI T E
Sbjct: 1 MKISKRVLNMPASP-IRKLVPYADEAKKRGIKVYHLNIGQ-----PDIKTPEVFFEAIKN 54
Query: 99 FALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI--EGDEIFISDGAQSDISRLQML-- 154
+ + Y QG LR A A K+YK GI E DEI I++G I M+
Sbjct: 55 YDEEVLA----YSHSQGIPELREAFA-KYYKKWGIDVEPDEILITNGGSEAIL-FAMMAI 108
Query: 155 --LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF-FPDLST 211
G + V +P + Y + G IV + + E F P
Sbjct: 109 CDPGDEILVP--EPFYANYNGFATSAGV------------KIVPVTTKIEEGFHLPSKEE 154
Query: 212 -----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP- 265
T +T I +P NPTG T ++L+ L E AK + ++ D Y ++ D
Sbjct: 155 IEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKY 214
Query: 266 RSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFN 325
S + G + I I S SK G R+G + + + +K +C
Sbjct: 215 TSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAA---AMK-----LCQARL 266
Query: 326 GASNIVQAGGLACLS-PDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWV 383
+ Q G A L P+ + V + YK+ I+ + + G+ K A Y+
Sbjct: 267 SPPTLEQIGAAALLDTPESY--FDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIA 324
Query: 384 QFPGSSSWDVFAEILE------KTHILTIPGSGF----GPGGNEHIRVSAFGHREYISEA 433
+ P + D +L +T ++ P SGF G G NE IR++ + E + A
Sbjct: 325 KLPVDDAEDFAKWLLTDFNYNGETVMVA-PASGFYATPGLGKNE-IRIAYVLNEEDLKRA 382
Query: 434 CRRLK 438
LK
Sbjct: 383 MEILK 387
|
Length = 397 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 96/431 (22%), Positives = 167/431 (38%), Gaps = 69/431 (16%)
Query: 43 NVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQ----PIPDIITSAMAEHA 98
NV + + P ++ ++ ++ +P+ +I+L IGD T P + AM +
Sbjct: 2 NVKPSDHSNNTVNPIRAIVDNMKVKPNPEKPVIKLSIGDPTVFGNLPTDPEVMQAMKD-- 59
Query: 99 FALSTVKGYKGYGAEQGNMALRTAIADKFYK-DMGIEGDEIFISDGAQSDISRLQMLL-- 155
+L + K Y GY G ++ R AIA ++ D IE D++ + G I +M +
Sbjct: 60 -SLDSGK-YNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAI---EMCIAA 114
Query: 156 ----GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIV--YMNCRPENNFFPDL 209
G N+ V P FP Y + + I N P+ ++ DL
Sbjct: 115 LANAGQNILVP--RPGFPLY--------------RTLAESMGIEVKLYNLLPDKSWEIDL 158
Query: 210 STTS-----RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS 264
+T + +P+NP G + Q L++++ A+ I+ D Y +
Sbjct: 159 KQLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVF--- 215
Query: 265 PRSIYEIPGAREVAIEISSFSKFAG---FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVC 321
+ +E + + I S A G RLGW ++ + I+D +
Sbjct: 216 SGATFEPVASLSSNVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRD---IRDGLVKLS 272
Query: 322 TCFNGASNIVQAGGLACL---SPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKN 377
G IVQ G L + +P + + + NA + A ++ GL+
Sbjct: 273 QRILGPCTIVQ-GALPSILLRTPQEY--FDGTLSVLESNAMLCYGALAAVPGLQPVMPSG 329
Query: 378 APYVWV-----QFPGSSSWDV--FAEILEKTHILTIPGSGFG-PGGNEHIRVSAFGHREY 429
A Y+ V FP + DV ++ + + +PGS F PG RV
Sbjct: 330 AMYMMVGIEMEHFPEFKN-DVEFTERLIAEQSVFCLPGSCFEYPG---FFRVVLTVPVVM 385
Query: 430 ISEACRRLKNF 440
+ EAC R++ F
Sbjct: 386 MEEACSRIQEF 396
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 65/279 (23%), Positives = 104/279 (37%), Gaps = 36/279 (12%)
Query: 67 RKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADK 126
D +I +G + + AM Y Y +G LR I
Sbjct: 23 YVFKDKEMIWMGQNTNHLGPHEEVREAMIRCIEE----GEYCKYPPPEGFPELRELIL-- 76
Query: 127 FYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK 186
KD+G++ DE I+ GA + + S AV P Y+ + G +
Sbjct: 77 --KDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVT--PDPGYLIIDNFASRFGAEVI 132
Query: 187 ETGKYRNIVYMNCRPENNF--FPDL---STTSRTDIIFFCSPNNPTGHAATWQQLKKLVE 241
E Y E N+ P+L + T +I+ P NP G + T +++K+ E
Sbjct: 133 EVPIYS--------EECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAE 184
Query: 242 FAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301
A+ N + +++D Y + + + + Y A E + SFSK G G+R+G V
Sbjct: 185 IARDNDAFLLHDCTYRDFAREHTLAAEY----APEHTVTSYSFSKIFGMAGLRIGAVVAT 240
Query: 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS 340
+L VI D G + I Q +A L
Sbjct: 241 PDLIEVVKSIVINDL---------GTNVIAQEAAIAGLK 270
|
Length = 380 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 95/397 (23%), Positives = 152/397 (38%), Gaps = 74/397 (18%)
Query: 74 LIRLGIG--DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD- 130
+I L IG D T P I+ + A AL+ G+ Y A +G ALR AIA FY
Sbjct: 34 VIHLEIGEPDFTTAEP-IVAAGQA----ALAA--GHTRYTAARGLPALREAIAG-FYAQR 85
Query: 131 --MGIEGDEIFISDGAQSDISRLQMLLGSNVTV------AVQDPSFPAYIDTSVIVGQAG 182
+ ++ + I ++ G +LL S++ V + DP +P
Sbjct: 86 YGVDVDPERILVTPGGSG-----ALLLASSLLVDPGKHWLLADPGYPCN----------R 130
Query: 183 KFLKET-GKYRNIVYMNCRPENNFFP-----DLSTTSRTDIIFFCSPNNPTGHAATWQQL 236
FL+ G + + P++ + + + T SP NPTG + +L
Sbjct: 131 HFLRLVEGAAQLVP---VGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDEL 187
Query: 237 KKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIE-----ISSFSKFAGFT 291
L + +A G +V D Y Y + A + ++ ++SFSK+ G T
Sbjct: 188 AALSQALRARGGHLVVDEIYHGLT--------YGVDAASVLEVDDDAFVLNSFSKYFGMT 239
Query: 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVI 351
G RLGW V P + + ++ + AS Q LAC P+ L
Sbjct: 240 GWRLGWLVAPPAA--------VPELEKLAQNLYISASTPAQHAALACFEPETLAILEARR 291
Query: 352 DYYKENAKIIVDAFQSLGLKVNG-GKNAPYVWVQFPGSSSWDVFA---EILEKTHILTIP 407
+ ++ A + LG + + A Y++ D FA LE H+ P
Sbjct: 292 AEFARRRDFLLPALRELGFGIAVEPQGAFYLYADISAFGG-DAFAFCRHFLETEHVAFTP 350
Query: 408 GSGFG---PGGNEHIRVSAFGHREYISEACRRLKNFL 441
G FG G +H+R + + EA R+ L
Sbjct: 351 GLDFGRHQAG--QHVRFAYTQSLPRLQEAVERIARGL 385
|
Length = 387 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 75/319 (23%), Positives = 129/319 (40%), Gaps = 59/319 (18%)
Query: 116 NMALRTAIADKFYKDMGIEGDEIFIS-DGAQSDISRL-QMLLGSNVTVAVQDPSFPAYID 173
LR A++ K+ G+ + I + DG I L + + V + P+F Y
Sbjct: 71 APELREALS-KYT---GVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEI 126
Query: 174 TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-----STTSRTDIIFFCSPNNPTG 228
++ G VY + E +F D+ + T +T +IF C+PNNPTG
Sbjct: 127 SAKAHGA------------KPVY--AKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTG 172
Query: 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFA 288
+ + ++K++E A ++ D AY + + + + I +FSK
Sbjct: 173 NLIPEEDIRKILESTDA---LVFVDEAYVEF----AEYDYTPLALEYDNLIIGRTFSKVF 225
Query: 289 GFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QA 346
G G+R+G+ VPE L I + R T F+ + + QA +A LS + ++
Sbjct: 226 GLAGLRIGYGFVPEWL--------IDYYMRAK-TPFS-LTRLSQAAAIAALSDKEYIEKS 275
Query: 347 LRTVI---DYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHI 403
+ I +Y V + S A +V V ++ F E L K +
Sbjct: 276 IEHGIKSREYLYNELPFKV--YPS---------EANFVLVDVTPMTA-KEFCEELLKRGV 323
Query: 404 LTIPGSGFGPGGNEHIRVS 422
+ + F G+ +IRVS
Sbjct: 324 IVRDCTSFRGLGDYYIRVS 342
|
Length = 361 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 86/378 (22%), Positives = 145/378 (38%), Gaps = 71/378 (18%)
Query: 74 LIRLGIGDTTQPIPDI------ITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKF 127
I LG G+ + IP++ + + M A + Y G QG L A+A
Sbjct: 32 AIMLGGGNPAR-IPEMDDYFQDLLAEMLASGKATEALCNYDG---PQGKAVLIDALAKML 87
Query: 128 YKDMG--IEGDEIFISDGAQSDISRLQMLLG----SNVTVAVQDPSFPAYIDTSVIVGQA 181
++ G I I +++G+QS L L + P P YI G A
Sbjct: 88 RREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYI------GYA 141
Query: 182 GKFLKETGKYRNIVYMNCRP------ENNF-----FPDLSTTSRTDIIFFCSPNNPTGHA 230
L+E ++++ +P F F L T I P NPTG+
Sbjct: 142 DAGLEED------LFVSAKPNIELLPAGQFKYHVDFEHLHIGESTGAICVSRPTNPTGNV 195
Query: 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE--IPGAREVAIEISSFSKFA 288
T ++L KL A+ +G ++ D+AY P P I+ P E I S SK
Sbjct: 196 LTDEELAKLDALARQHGIPLIIDNAYGV----PFPGIIFSDATPLWNENIILCMSLSK-L 250
Query: 289 GFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNG-----ASNIVQAGGLACLSPDG 343
G G R G + E++ I + N I+ A+ ++++G L LS
Sbjct: 251 GLPGSRCGIIIANEKV-----IQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLS--- 302
Query: 344 FQALRTVID-YYKENAKIIVDAFQS----LGLKVNGGKNAPYVWVQFPG--SSSWDVFAE 396
VI +Y+ + + + ++ + A ++W+ F ++ +++
Sbjct: 303 ----EQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPITTEELYQR 358
Query: 397 ILEKTHILTIPGSGFGPG 414
L+ +L +PG F PG
Sbjct: 359 -LKARGVLMVPGHYFFPG 375
|
Length = 417 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 67/264 (25%), Positives = 105/264 (39%), Gaps = 43/264 (16%)
Query: 196 YMNCRPENNFFPDLS-----TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSII 250
Y + EN + PDL T +I + NNPTG L+++VE A++ + +
Sbjct: 130 YWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYV 189
Query: 251 VYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY 310
+ D Y D S SI ++ E I +S SK G+R+GW EE+ +
Sbjct: 190 LSDEVYRPLDEDGSTPSIADL---YEKGISTNSMSKTYSLPGIRVGWIAANEEV--IDIL 244
Query: 311 PVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGL 370
+D+ I F+ LA L AL + N KI+ L
Sbjct: 245 RKYRDYTMICAGVFDDM--------LASL------ALEHRDAILERNRKIVRTNLAILDE 290
Query: 371 KVNGGKNAPYVWVQFPGSSS-----WDV------FA-EILEKTHILTIPGSGFG-PGGNE 417
V P V P + S DV F ++L++T +L +PG+ F G
Sbjct: 291 WV---AKEPRVSYVKPKAVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDLEG--- 344
Query: 418 HIRVSAFGHREYISEACRRLKNFL 441
H+R+ E + + ++L FL
Sbjct: 345 HVRIGYCCDTETLKKGLKKLSEFL 368
|
Length = 373 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 6e-13
Identities = 95/389 (24%), Positives = 152/389 (39%), Gaps = 83/389 (21%)
Query: 109 GYGAEQGNMALRTAIADKFYKDMGIEGD--EIFISDGAQSDISR-LQMLLG-SNVTVAVQ 164
Y G +R A+A + G+ D +IF++DGA S I LQ+L+G + V +
Sbjct: 110 AYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIP 169
Query: 165 DPSFPAYIDTSVIVG--QAGKFLKETGKYRNIVYMNCRPENNFFPDLS------------ 210
P +P Y ++G Q +L E E + D
Sbjct: 170 IPQYPLYSAAITLLGGKQVPYYLDE--------------EKGWSLDQEELEEAYEQAVRN 215
Query: 211 -TTSRTDIIFFC-SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI 268
T R +P NPTG T ++++++F G +++ D Y I D I
Sbjct: 216 GITPR---ALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFI 272
Query: 269 ------YEIPGAREVAIEISSF---SK-FAGFTGVRLGW---TVVPEELRYSNGYPVIKD 315
E+P +E+ SF SK G G R G+ T +P E+R + K
Sbjct: 273 SFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQ----IYKL 328
Query: 316 FNRIVCTCFNGASNIVQAGGLACLSP-------DGFQALR-TVIDYYKENAKIIVDAFQS 367
+ + C N ++ GL C P ++ R + K A+++ D
Sbjct: 329 AS--INLCSNVVGQLMT--GLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNK 384
Query: 368 L-GLKVNGGKNAPYVWVQ--FP---------GSSSWDVF--AEILEKTHILTIPGSGFG- 412
+ G+ + A Y + + P + DV E+LE T I+ +PGSGFG
Sbjct: 385 IEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQ 444
Query: 413 -PGGNEHIRVSAFGHREYISEACRRLKNF 440
PG H R++ E I E +++K F
Sbjct: 445 KPGTY-HFRITILPPEEQIEEMVKKIKEF 472
|
Length = 481 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 7e-13
Identities = 98/405 (24%), Positives = 164/405 (40%), Gaps = 53/405 (13%)
Query: 54 LFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGY--KGYG 111
+F ++S +H I LG G PD + A + A+ K +G+G
Sbjct: 43 IFTQMSSLAIKH-------GAINLGQGFPNFDGPDFVKEAAIQ---AIRDGKNQYARGFG 92
Query: 112 AEQGNMALRTAIADKFYKDMGIEGD---EIFISDGAQSDISRLQM-LLGSNVTVAVQDPS 167
+ L +AIA++F KD G+ D E+ ++ G I+ + L+ V + P
Sbjct: 93 VPE----LNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF 148
Query: 168 FPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD----LSTTSRTDIIFFCSP 223
+ +Y T + G I + RP + P+ + TS+T I +P
Sbjct: 149 YDSYEATLSMAGA------------KIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTP 196
Query: 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISS 283
+NPTG T ++L+ + K N + D Y + S+ +PG E + ++S
Sbjct: 197 HNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNS 256
Query: 284 FSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG 343
K TG ++GW + P L + G F F A+ + A A +P+
Sbjct: 257 LGKTFSLTGWKIGWAIAPPHLTW--GVRQAHSF-----LTFATATPMQWAAVAALRAPES 309
Query: 344 -FQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQF-PGSSSWDV-FAEIL-E 399
++ L+ DY + I+V+ + +G KV +V V P D+ F E L E
Sbjct: 310 YYEELKR--DYSAKKD-ILVEGLKEVGFKVYPSSGTYFVMVDHTPFGFENDIAFCEYLIE 366
Query: 400 KTHILTIPGSGF--GP-GGNEHIRVSAFGHREYISEACRRLKNFL 441
+ + IP S F P G +R + E + A R+K L
Sbjct: 367 EVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKL 411
|
Length = 413 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 29/203 (14%)
Query: 111 GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS-RLQMLLGSNVTVAVQDPSFP 169
G G LR AIAD++ G + + + G+ I L LL V V DP++
Sbjct: 48 GPSLGGEGLRAAIADRW---RGGDAHVVMTTHGSSEAIYLVLTALLRPGDEVVVVDPAYH 104
Query: 170 AYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPN 224
+ +V G E + F PDL T RT + P+
Sbjct: 105 SLSHLAVATGC------EVRPWP------LLAVRGFRPDLDALRALLTPRTRAVVVNFPH 152
Query: 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA--AYITDPSPRSIYEIPGAR-EVAIEI 281
NPTG + T ++L +L+E A +G+++++D+A+A + P P P A + I
Sbjct: 153 NPTGASVTPRELDELLERAARSGAVLLWDNAFADLVHDAPPLPD-----PSALYDRVISF 207
Query: 282 SSFSKFAGFTGVRLGWTVVPEEL 304
+ SK G G+R+GW V P +L
Sbjct: 208 GTLSKAFGLPGLRVGWCVGPADL 230
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 3e-12
Identities = 67/277 (24%), Positives = 111/277 (40%), Gaps = 63/277 (22%)
Query: 115 GNM-ALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLL------GSNVTVAVQDPS 167
G+ L+ A+A+KF G++ + I + +G+ +I L++L G V + +
Sbjct: 67 GSGFELKAALAEKF----GVDPERIILGNGS-DEI--LELLARAYLGPGDEVIYS--EHG 117
Query: 168 FPAYIDTSVIVGQA-GKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221
F Y I QA G E P ++ DL T RT ++F
Sbjct: 118 FAVY----PIAAQAVGAKPVEV------------PAKDYGHDLDAMLAAVTPRTRLVFIA 161
Query: 222 SPNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVA 278
+PNNPTG T+ +++ F ++V D AYA Y+ + E+
Sbjct: 162 NPNNPTG---TYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGL-ELVAKFPNV 217
Query: 279 IEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLAC 338
+ +FSK G G+R+G+ + P E +I NR+ FN +++ A +A
Sbjct: 218 VVTRTFSKAYGLAGLRVGYGIAPPE--------IIDALNRVRQP-FN-VNSLALAAAVAA 267
Query: 339 LSPDGFQALRTVIDYYKENA---KIIVDAFQSLGLKV 372
L D F NA + + LGL+
Sbjct: 268 LDDDAFVEK-----SRALNAEGMAWLTEFLAELGLEY 299
|
Length = 367 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 68/263 (25%), Positives = 109/263 (41%), Gaps = 37/263 (14%)
Query: 54 LFPEISMRESEHIRKHPDARLIRLGIG--DTTQPIPDIITSAMAEHAFALSTVKGYKGYG 111
+F E+S A + LG G D P P+++ A+ A A G Y
Sbjct: 13 IFAEMSALAVRT-----GA--VNLGQGFPDEDGP-PEML--EAAQEAIA----GGVNQYP 58
Query: 112 AEQGNMALRTAIADKFYKDMGIEGD---EIFISDGAQSDIS-RLQMLLGSNVTVAVQDPS 167
G LR AIA + + G+E D E+ ++ GA I+ + L+ V + +P
Sbjct: 59 PGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPY 118
Query: 168 FPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-----STTSRTDIIFFCS 222
+ +Y + ++ AG +R V + F DL + T RT + S
Sbjct: 119 YDSY---AAVIAMAGA-------HRVPVPLV-PDGRGFALDLDALRAAVTPRTRALIVNS 167
Query: 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEI 281
P+NPTG T +L + E A + +++ D Y + + +PG RE + I
Sbjct: 168 PHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTI 227
Query: 282 SSFSKFAGFTGVRLGWTVVPEEL 304
SS +K TG ++GW P L
Sbjct: 228 SSAAKTFNVTGWKIGWACGPAPL 250
|
Length = 387 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 76/321 (23%), Positives = 115/321 (35%), Gaps = 60/321 (18%)
Query: 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVI 177
LR A A + G+ + +GAQ I L LL V V P++ Y
Sbjct: 51 ELRAAAAAYY----GLPAASVLPVNGAQEAIYLLPRLLAPG-RVLVLAPTYSEYARAWRA 105
Query: 178 VGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLK 237
G L P+ + P D++ C+PNNPTG + L
Sbjct: 106 AGHEVVEL---------------PDLDRLPAAL--EEADLLVVCNPNNPTGRLIPPETLL 148
Query: 238 KLVEFAKANGSIIVYDSAYAAYITDPSPR-SIYEIPGAREVAIEISSFSKFAGFTGVRLG 296
L +A G +V D A+ D +P S+ + + S +KF G G+RLG
Sbjct: 149 ALAARLRARGGWLVVDEAFI----DFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLG 204
Query: 297 WTVVPEEL-----RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVI 351
+ V L + V NG + A G A L+ +QA T
Sbjct: 205 FVVAHPALIARLREALGPWTV------------NGPA---LAAGRAALADTAWQA-ATRA 248
Query: 352 DYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP 407
E A++ L GL+V GG A ++ V+ P +++ E L + IL
Sbjct: 249 RLAAERARL----AALLARLGGLRVVGG-TALFLLVRTPDAAAL---HEALARRGILIRD 300
Query: 408 GSGFGPGGNEHIRVSAFGHRE 428
F ++R + E
Sbjct: 301 FDNFPGLDPRYLRFALPTDEE 321
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 62/244 (25%), Positives = 100/244 (40%), Gaps = 44/244 (18%)
Query: 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDTSV 176
ALR AIA + G+ D I + +G++ I+ + + +L V PSFP + D
Sbjct: 75 ALREAIAART----GVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPT 130
Query: 177 IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---------TTSRTDIIFFCSPNNPT 227
++G + + T PDL ++ F +P+NP
Sbjct: 131 MMGARVERVTVT------------------PDLGFDLDALCAAVARAPRMLMFSNPSNPV 172
Query: 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVA-IEISSFSK 286
G T QL ++++ ++IV D AYA Y S + AR + I + +FSK
Sbjct: 173 GSWLTADQLARVLDATPPE-TLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSK 231
Query: 287 FAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA 346
G G+R+G+ +V + P + V T FN + QA LA L + A
Sbjct: 232 AYGLAGLRVGYGLVSD--------PELVGLLDRVRTPFN-VNGAAQAAALAALDDEEHLA 282
Query: 347 LRTV 350
+ V
Sbjct: 283 -KGV 285
|
Length = 371 |
| >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 78/286 (27%), Positives = 122/286 (42%), Gaps = 58/286 (20%)
Query: 67 RKHPDARLIRLGIGDTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIAD 125
+ P A I+L +T P+P S A A A + V Y GA LR A+A+
Sbjct: 19 KTVPGA--IKLSSNETPFGPLP----SVRAAIARAAAGVNRYPDMGAV----ELRAALAE 68
Query: 126 KFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDP------SFPAYIDTSVIVG 179
G+ + + + G S ++ Q L+ T D SF AY ++V
Sbjct: 69 HL----GVPPEHVAV--GCGS-VALCQQLV--QATAGPGDEVIFAWRSFEAY---PILVQ 116
Query: 180 QAGKFLKETGKYRNIVYMNCRPENNFFPDL-----STTSRTDIIFFCSPNNPTGHAATWQ 234
AG T V + P++ DL + T RT +IF C+PNNPTG T
Sbjct: 117 VAGA----TP-----VQVPLTPDHTH--DLDAMAAAITDRTRLIFVCNPNNPTGTVVTPA 165
Query: 235 QLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGV 293
+L + ++ A+ ++V D AY Y+ D P + E+ + + +FSK G G+
Sbjct: 166 ELARFLDAVPAD-VLVVLDEAYVEYVRDDDVPDGL-ELVRDHPNVVVLRTFSKAYGLAGL 223
Query: 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL 339
R+G+ V G+P + R V F +++ QA +A L
Sbjct: 224 RVGYAV---------GHPEVIAALRKVAVPF-SVNSLAQAAAIASL 259
|
Length = 352 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 193 NIVYMNCRPENNFFPDLST----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGS 248
I Y E NF + D++F C+PNNPTG + +++KK+++ +
Sbjct: 116 EIEYAELTEETNFAANEIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNI 175
Query: 249 IIVYDSAYAAYITDPSPRS-IYEIPGAREVAIEISSFSKFAGFTGVRLGW 297
++ D A+ ++ + S I + + + I I +F+KF G+RLG+
Sbjct: 176 YLIIDEAFMDFLEENETISMINYLENFKNLII-IRAFTKFFAIPGLRLGY 224
|
Length = 354 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 3e-11
Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 28/240 (11%)
Query: 73 RLIRLGIGDTTQPIPDIITSAMAEHAF--ALSTVKGYKGYGAEQGNMALRTAIADKFYKD 130
R+I LG+GD T T+ +A+ A AL + K + GY G R AIA+ +D
Sbjct: 32 RVISLGMGDPTA-YSCFHTTHVAQEAVVDALQSNK-FNGYAPTVGLPQARRAIAEYLSRD 89
Query: 131 M--GIEGDEIFISDGAQSDIS-RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE 187
+ + D++FI+ G I L ML + + P FP Y +
Sbjct: 90 LPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIY--------------EL 135
Query: 188 TGKYRN--IVYMNCRPENNFFPDLSTT-----SRTDIIFFCSPNNPTGHAATWQQLKKLV 240
+R+ + Y++ PE + DL T + +P NP G+ ++Q LKK+
Sbjct: 136 CAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIA 195
Query: 241 EFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300
E A+ +++ D Y +P + G+ + + S SK G RLGW V
Sbjct: 196 ETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVT 255
|
Length = 409 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 79/349 (22%), Positives = 134/349 (38%), Gaps = 87/349 (24%)
Query: 110 YGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQS--------------DISRLQM 153
Y QG L A+A + G I I +++G+QS D S ++
Sbjct: 70 YDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKI 129
Query: 154 LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP-----ENNFF-- 206
L P P YI G A L+E ++++ RP F
Sbjct: 130 LF----------PLAPEYI------GYADAGLEED------LFVSYRPNIELLPEGQFKY 167
Query: 207 -PDLST---TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD 262
D T I P NPTG+ T ++L+KL A+ + ++ D+AY
Sbjct: 168 HVDFEHLHIDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGP---- 223
Query: 263 PSPRSIYE--IPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIK---DFN 317
P P I+ P I S SK G GVR G + EE +I+ + N
Sbjct: 224 PFPGIIFSEATPLWNPNIILCMSLSK-LGLPGVRCGIVIADEE--------IIEALSNMN 274
Query: 318 RIVCTCFNG-----ASNIVQAGGLACLSPDGFQALRTVI-DYYKENAKIIVDAFQ----S 367
I+ A+ ++++G L LS TVI +Y++ ++ + +
Sbjct: 275 GIISLAPGRLGPAIAAEMIESGDLLRLS-------ETVIRPFYRQKVQLAIALLRRYLPD 327
Query: 368 LGLKVNGGKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPG 414
++ + A ++W+ F ++ +++ + L+ +L +PG F PG
Sbjct: 328 EPCLIHKPEGAIFLWLWFKDLPITTEELY-QRLKARGVLVVPGHYFFPG 375
|
Length = 416 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-11
Identities = 85/380 (22%), Positives = 148/380 (38%), Gaps = 53/380 (13%)
Query: 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGA 144
PD T + A + +G Y G ALR AI K + G+ +EI + GA
Sbjct: 43 PDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGA 102
Query: 145 QSDI-SRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN 203
+ I L L + V + P + +Y D +++ G V + C E
Sbjct: 103 KQAIFLALMATLEAGDEVIIPAPYWVSYPD--MVLANDGT----------PVIVACPEEQ 150
Query: 204 NFF--PDL---STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIV-----YD 253
F P+ + T RT + +P+NPTG + +L+ L + + ++V YD
Sbjct: 151 GFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYD 210
Query: 254 SAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVI 313
+ +P+P + P R+ + + SK TG R+G+ P +I
Sbjct: 211 HIR--FDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPA--------DLI 260
Query: 314 KDFNRIVCTCFNGASNIVQAGGLACLSPD-GFQALRTVIDYYKENAKIIVDAFQSL-GLK 371
N++ + S+I QA A L+ D F + + YK+ + ++ GL
Sbjct: 261 AAINKLQSQSSSCPSSISQAAAAAALNGDQSF--VTESVAVYKQRRDYALALLNAIPGLS 318
Query: 372 VNGGKNAPYVWVQFPG------------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHI 419
A Y++V G + DV +L+ + + G+ +G +
Sbjct: 319 CLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLS--PYF 376
Query: 420 RVSAFGHREYISEACRRLKN 439
R+S E + EAC R++
Sbjct: 377 RLSIATSLETLEEACARIER 396
|
Length = 402 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-11
Identities = 94/405 (23%), Positives = 152/405 (37%), Gaps = 97/405 (23%)
Query: 46 MESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK 105
M+++QS + P + + IR++P I LG G + P P A+ L+ +
Sbjct: 8 MDAVQSP-IIPVVG----QLIRENPGT--ISLGQGVVSYPPPPEAIEALNN---FLANPE 57
Query: 106 GYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLL---GSNVTVA 162
+K Y A QG L AI K +D GI +++ Q ++ GSN+
Sbjct: 58 NHK-YQAVQGIPPLLEAITQKLQQDNGI-------------ELNNEQAIVVTAGSNM--- 100
Query: 163 VQDPSFPAYIDTSVIVGQAG-KFLKETGKYRN----IVYMNCRP-----ENNFFPDL--- 209
A+++ + + G + + T Y N I C+P ++N+
Sbjct: 101 -------AFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAI 153
Query: 210 --STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP---- 263
+ T +T I SPNNPTG L+ + + +G + D AY + D
Sbjct: 154 EQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHF 213
Query: 264 SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTC 323
SP SI PG+ I + S SK GF R+G+ V+P L I+D I C
Sbjct: 214 SPGSI---PGSGNHTISLYSLSKAYGFASWRIGYMVIPIHL--LEAIKKIQDTILI-C-- 265
Query: 324 FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-------------- 369
+ Q L L G + + + +I++ + L
Sbjct: 266 ---PPVVSQYAALGALQ-VGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYC 321
Query: 370 -LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTH-ILTIPGSGFG 412
LKVN N + L + + + IPG+ FG
Sbjct: 322 FLKVNTDLND-------------FELVKQLIREYRVAVIPGTTFG 353
|
Length = 389 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 33/245 (13%)
Query: 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR-SIYEI 271
R + C+P+NPTG T ++L+K+ E +G ++ D +A + +
Sbjct: 157 ERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASL 216
Query: 272 -PGAREVAIEISSFSKFAGFTGVRLGWTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASN 329
+ +I ++S SK G++ + ++ ELR +K R +
Sbjct: 217 SERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAK----FLKRLKRNGLHGPSALGI 272
Query: 330 IVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSS 389
I G L +++Y K+N + D K+ P V V P +
Sbjct: 273 IATEAAYN----QGEPWLDELLEYLKDNRDYVADFL---------NKHLPGVKVTEPQGT 319
Query: 390 --SWDVFAE-----------ILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRR 436
+W E +LE+ + PGS FG G+ +R++ R + EA R
Sbjct: 320 YLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALER 379
Query: 437 LKNFL 441
LK L
Sbjct: 380 LKRAL 384
|
Length = 388 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 22/119 (18%)
Query: 195 VYMNCRPENNFFPDLSTTS-----RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSI 249
++NC P NNF PD RT ++F CSP NPTG KKL + G +
Sbjct: 142 YFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFV 201
Query: 250 IVYDSAYAA-YITDPSPRSIYEIPGAREVAIEI-----------SSFSKFAGFTGVRLG 296
I D Y+ Y + +P G E A E+ S SK + G+R G
Sbjct: 202 IASDECYSEIYFDEAAPP-----LGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSG 255
|
Length = 396 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 90/363 (24%), Positives = 151/363 (41%), Gaps = 60/363 (16%)
Query: 109 GYGAEQGNMALRTAIADKFYKDMGIEG---DEIFISDGAQSDIS-RLQMLLGSNVTVAVQ 164
GY +G + R AI ++ + G+ D+I+ +G I+ + LL V +
Sbjct: 180 GYSDSKGLFSARKAIM-QYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIP 238
Query: 165 DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS-----TTSRTDIIF 219
P +P + + V AG G V+ C ++ ++PD+ TSRT I
Sbjct: 239 SPDYPLW---TACVNLAG------GT---AVHYRCDEQSEWYPDIDDIRSKITSRTKAIV 286
Query: 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR-SIYEIPGAREV- 277
+PNNPTG + L+++V+ A+ + II D Y + D SI + A ++
Sbjct: 287 IINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASL--APDLF 344
Query: 278 AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFN-----RIVCTCFN-GASNIV 331
+ S SK G R+GW ++ R + Y I+ N R+ C N A +IV
Sbjct: 345 CVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDY--IEGLNMLANMRL---CSNVPAQSIV 399
Query: 332 Q-AGGLACLSPDGFQALRTVIDYYKENAKI------IVDAFQSL-GLKVNGGKNAPYVWV 383
Q A G G Q +V DY ++ + +A ++ G+ K A Y++
Sbjct: 400 QTALG-------GHQ---SVKDYLVPGGRVYEQRELVYNALNAIPGISAVKPKAAFYIFP 449
Query: 384 Q-----FPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLK 438
+ F ++L +L + G+GF +H RV E + +A RL
Sbjct: 450 KIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRLA 509
Query: 439 NFL 441
+F
Sbjct: 510 DFF 512
|
Length = 517 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 75/264 (28%), Positives = 118/264 (44%), Gaps = 59/264 (22%)
Query: 73 RLIRLGIGDTTQPI----PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFY 128
++++L IG+ P PD I + + L T +GY +G + R AI ++Y
Sbjct: 34 KILKLNIGNPA-PFGFEAPDEILRDVIRN---LPTAQGY---SDSKGLFSARKAIM-QYY 85
Query: 129 KDMGIEG---DEIFISDGAQSDIS-RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKF 184
+ GI D+I+I +G I +Q LL + V V P +P + + V +G
Sbjct: 86 QQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLW---TAAVSLSG-- 140
Query: 185 LKETGKYRNIVYMNCRPENNFFPDLS-----TTSRTDIIFFCSPNNPTGHAATWQQLKKL 239
GK V+ C E +FPDL T RT I +PNNPTG + + L+++
Sbjct: 141 ----GK---PVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEI 193
Query: 240 VEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAI----------EISSFSK--- 286
VE A+ + II D Y D + +Y+ GA ++I + SK
Sbjct: 194 VEIARQHNLIIFADEIY-----D---KILYD--GAVHISIASLAPDLLCVTFNGLSKAYR 243
Query: 287 FAGFTGVRLGWTVVPEELRYSNGY 310
AGF R+GW V+ +++ GY
Sbjct: 244 VAGF---RVGWMVLSGPKKHAKGY 264
|
Length = 404 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 4e-10
Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 32/199 (16%)
Query: 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQ---SDISRLQMLLGSNVTVAVQDPSFPAY 171
G LR IA+K + M +++ G ISR + G N+ A +FP Y
Sbjct: 65 GATTLRQTIANKLHVKM----EQVLCGSGLDEVIQIISRAVLKAGDNIVTA--GATFPQY 118
Query: 172 IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTS-----RTDIIFFCSPNNP 226
++I G +KE NN DL S T I++ C+PNNP
Sbjct: 119 RHHAIIEGCE---VKEV------------ALNNGVYDLDEISSVVDNDTKIVWICNPNNP 163
Query: 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFS 285
TG ++L + +E N ++IV D AY Y+T P ++ + + + + + +FS
Sbjct: 164 TGTYVNDRKLTQFIEGISEN-TLIVIDEAYYEYVTAKDFPETLPLLEKHKNILV-LRTFS 221
Query: 286 KFAGFTGVRLGWTVVPEEL 304
K G R+G+ V EEL
Sbjct: 222 KAYGLASFRVGYAVGHEEL 240
|
Length = 366 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-10
Identities = 83/341 (24%), Positives = 145/341 (42%), Gaps = 66/341 (19%)
Query: 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSD-----ISRLQMLLGSNVTVAVQDPSFPAYI 172
LRT +A +G++ +++ GA D ISR + G+N +A +P+F Y
Sbjct: 68 ELRTKVAKH----LGVDEEQLLF--GAGLDEVIQMISRALLNPGTNTVMA--EPTFSQYR 119
Query: 173 DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTS-----RTDIIFFCSPNNPT 227
++I E + R + P + DL +T I++ C+PNNPT
Sbjct: 120 HNAII---------EGAEVREV------PLKDGGHDLEAMLKAIDEQTKIVWICNPNNPT 164
Query: 228 GHAATWQQLKKLVEFAKANGS--IIVYDSAYAAYITDPS-PRS---IYEIPGAREVAIEI 281
G T+ ++L+ F ++ S ++V D AY Y+T P + + + I +
Sbjct: 165 G---TYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYEN----LIVL 217
Query: 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP 341
+FSK G +R+G+ + EEL I+ N I FN + I Q +A L
Sbjct: 218 RTFSKAYGLAALRVGYGIASEEL--------IEKLN-IARPPFN-TTRIAQYAAIAALED 267
Query: 342 DGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKT 401
F L+ ++ E + + GL +++V G + ++F +L+K
Sbjct: 268 QAF--LKECVEKNAEGLEQYYAFCKEYGLFYYPS-QTNFIFVDT-GRDANELFEALLKKG 323
Query: 402 HILTIPGSGFG-PGGNEHIRVSAFGHREYISEACRRLKNFL 441
+I G+ G P G +R++ G +E + LK L
Sbjct: 324 YI-VRSGAALGFPTG---VRIT-IGLKEQNDKIIELLKELL 359
|
Length = 359 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 31/207 (14%)
Query: 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYI 172
+ LR AIA+ FY G++ + I + +G+ IS L L + + P+F Y
Sbjct: 54 HITSDPLREAIAE-FY---GLDAENIAVGNGSDELISYLVKLFEGK-HIVITPPTFGMY- 107
Query: 173 DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAAT 232
S G + + + E +F CSPNNPTG+
Sbjct: 108 --SFYAKLNGIPVIDVPLKED---FTIDGER----IAEKAKNASAVFICSPNNPTGNLQP 158
Query: 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292
+++ K++E G +V D AYA + I E P I + +FSK G G
Sbjct: 159 EEEILKVLE----TGKPVVLDEAYAEFSGKSLIGLIDEYPN----LILLRTFSKAFGLAG 210
Query: 293 VRLGWTVVPEELRYSNGYPVIKDFNRI 319
+R G+ + EE +I RI
Sbjct: 211 IRAGYAIANEE--------IIDALYRI 229
|
Length = 337 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 88/396 (22%), Positives = 157/396 (39%), Gaps = 57/396 (14%)
Query: 64 EHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAI 123
+ I + + + + L IG+ P I A+ +A L Y G +LR A
Sbjct: 16 KEITPNKEYKGLDLTIGEPQFETPKFIQDALKNNAHLL------NKYPKSAGEESLREAQ 69
Query: 124 ADKFYKDMGIEGD--EIFISDGAQSDISRL-QMLLGS--NVTVAVQDPSFPAYIDTSVIV 178
F + IE E+ + G + + Q +L N T+A +P + Y + + I
Sbjct: 70 RGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIY-EGAAIA 128
Query: 179 GQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT--SRTDIIFFCSPNNPTGHAATWQQL 236
+A ++ M EN+F P L+ D++ SPNNPTG + ++L
Sbjct: 129 SRA-----------KVLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEEL 177
Query: 237 KKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIP---GAREV--AIEISSFSKFAGFT 291
+ V+ A + I++ D Y+ + P S+ E G + I+S SK +
Sbjct: 178 IEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAP 237
Query: 292 GVRLGWTVVPEELRYSNGYPVIKDFN--RIVCTCFNGASNIVQ-AGGLACLSPDGFQALR 348
G+R G+ + +K + R C + +Q A +A L + + R
Sbjct: 238 GLRSGFIAGDASI--------LKKYKAYRTYLGC--ASPLPLQKAAAVAWLDDEHAEFFR 287
Query: 349 TVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEIL-EKTHILTIP 407
+ Y +N K+ A + LG+ + YVW+ F + L + I +P
Sbjct: 288 ---NIYAKNLKL---AREILGITIP--PATFYVWLPVDNDEE---FTKKLYQNEGIKVLP 336
Query: 408 GSGFGPG--GNEHIRVSAFGHREYISEACRRLKNFL 441
GS G G ++R++ + +A +K +L
Sbjct: 337 GSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYL 372
|
Length = 374 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 46/257 (17%)
Query: 93 AMAEHAFALSTVKGY-KGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL 151
A+ E A V Y K A+ L A+AD++ + +++++++G + L
Sbjct: 51 AIREAA---ERVHSYPKASHAD-----LTAALADRW----DVSPEQVWLANGGDGALDYL 98
Query: 152 -QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF--FPD 208
+ +L TV V DP F Y G + ++ + + ++F D
Sbjct: 99 ARAMLDPGDTVLVPDPGFAYY-------GMSARY-----HHGEVREYPVSKADDFEQTAD 146
Query: 209 LSTTSRTD--IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR 266
+ I++ SP+NPTG +++ L E +++V D AY + PS
Sbjct: 147 TVLDAYDGERIVYLTSPHNPTGSEIPLDEVEALAE-RTDEETLVVVDEAYGEFAERPSAV 205
Query: 267 SIYEIPGARE-VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFN 325
++ E R+ VA+ + +FSK G G+RLG+ VVPEE +++ Y + T F
Sbjct: 206 ALVE---ERDDVAV-LRTFSKAYGLAGLRLGYAVVPEE--WADAYARVN-------TPF- 251
Query: 326 GASNIVQAGGLACLSPD 342
AS + GLA L D
Sbjct: 252 AASELACRAGLAALDDD 268
|
Length = 357 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 7e-09
Identities = 62/284 (21%), Positives = 119/284 (41%), Gaps = 45/284 (15%)
Query: 125 DKFYKDMGIEGDEIFISDGAQSDISRLQML--LGSNVTVAVQDPSFPAYIDTSVIVGQAG 182
++ + + IF+ +G+ +I L ML + V PSF Y S I G
Sbjct: 66 EELARYCSVVPTNIFVGNGS-DEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGA-- 122
Query: 183 KFLKETGKYRNIVYMNCRPENNF----FPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKK 238
+ + + + + F + + ++F C+PNNPTG + + K
Sbjct: 123 ----------VEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIK 172
Query: 239 LVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298
++E K+ G I+V D AY + + +I ++ E I + + SK G G+R+G+
Sbjct: 173 IIE--KSRG-IVVVDEAYFEFYGN----TIVDVINEFENLIVLRTLSKAFGLAGLRVGYA 225
Query: 299 VV-PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKEN 357
V L+Y N +V + +N +++ Q L L L+ ++Y
Sbjct: 226 VANENILKYLN----------LVKSPYN-INSLSQVIALKVLRTG---VLKERVNYILNE 271
Query: 358 AKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEK 400
+ ++ + G+KV K ++ V+F + V+ +LE+
Sbjct: 272 RERLIKELSKIPGIKVYPSK-TNFILVKFKDAD--YVYQGLLER 312
|
Length = 351 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG 273
R ++FFC+PNNP G +++LK L++ + ++++ D A+ ++ P G
Sbjct: 117 RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE-----SPEG 171
Query: 274 AREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304
E I++ +F+K G G+R+G+ EE
Sbjct: 172 --ENIIKLRTFTKSYGLPGIRVGYVKGFEEA 200
|
Length = 311 |
| >gnl|CDD|235115 PRK03317, PRK03317, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG 273
R D++F SPNNPTG A ++ +++ A I+V D AYA + +P ++ +P
Sbjct: 160 RPDVVFLTSPNNPTGTALPLDDVEAILDAAPG---IVVVDEAYAEFRRSGTPSALTLLPE 216
Query: 274 AREVAIEISSFSKFAGFTGVRLGW 297
+ + + SK F G RLG+
Sbjct: 217 YPRLVVS-RTMSKAFAFAGGRLGY 239
|
Length = 368 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 90/371 (24%), Positives = 150/371 (40%), Gaps = 50/371 (13%)
Query: 110 YGAEQGNMALRTAIADKFYKDMGI--EGDEIFISDGAQSDISRLQMLLGSNVT--VAVQD 165
Y QG LR AIA G + ++IF++DGA + + LL + +
Sbjct: 164 YSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPI 223
Query: 166 PSFPAYIDTSVIVGQAGKFL-----KETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFF 220
P +P Y ++ I G + + TG I + + E+ ++ + I
Sbjct: 224 PQYPLY--SASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVI--- 278
Query: 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA--AYITDPSPRSIYEIP---GAR 275
+P NPTG + + +VEF K G +++ D Y Y+ D S ++ G
Sbjct: 279 -NPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYG 337
Query: 276 EVAIEISSF---SK-FAGFTGVRLGW---TVVPEELRYSNGYPVIKDFNRIVCTCFNG-- 326
E I + SF SK + G G R G+ T ++R + K + +C+ +G
Sbjct: 338 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQ----IYKVASVNLCSNISGQI 393
Query: 327 -ASNIVQAGGLACLSPDGFQALRT-VIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVW- 382
AS ++ S + + A + ++ AK + DA SL G+ N + A Y++
Sbjct: 394 LASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFP 453
Query: 383 -VQFP---------GSSSWDVF--AEILEKTHILTIPGSGFGP-GGNEHIRVSAFGHREY 429
+ P ++ D F +L T I+ +PGSGFG G H R + +
Sbjct: 454 RIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDK 513
Query: 430 ISEACRRLKNF 440
I RL F
Sbjct: 514 IPAIVSRLTEF 524
|
Length = 534 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 40/246 (16%)
Query: 75 IRLGIG--DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG 132
I LG G D P D+ +A A AL + G Y G LR A+A + + G
Sbjct: 29 INLGQGFPDDPGP-EDVRRAA----ADAL--LDGSNQYPPMMGLPELRQAVAAHYARFQG 81
Query: 133 IEGD---EIFISDGAQSDI-SRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKET 188
++ D E+ ++ GA + + L L+ V + P + AY+ ++ +AG +
Sbjct: 82 LDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYL---PLIRRAGGVPR-- 136
Query: 189 GKYRNIVYMNCRPENNFFPDLST---------TSRTDIIFFCSPNNPTGHAATWQQLKKL 239
+V + P P + RT + +P NP G ++L L
Sbjct: 137 -----LVRL--EP-----PHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALL 184
Query: 240 VEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298
EF + + ++ + D + + D + +PG RE ++I S K TG ++G+
Sbjct: 185 AEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFV 244
Query: 299 VVPEEL 304
L
Sbjct: 245 CAAPPL 250
|
Length = 387 |
| >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276
+I+ C+PNNPTG ++ L+ K GS+++ D AY + P S+ ++ R+
Sbjct: 168 LIYICNPNNPTGTVTPRADIEWLLA-NKPAGSVLLVDEAYIHFSDAP---SVVDLVAQRK 223
Query: 277 VAIEISSFSKFAGFTGVRLGWTVVPEEL 304
I + +FSK G G+RLG +L
Sbjct: 224 DLIVLRTFSKLYGMAGMRLGLAAARPDL 251
|
Length = 370 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 32/230 (13%)
Query: 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD---EIFISDG 143
P + A+A A G+ Y G ALR AIA K + G + D EI ++ G
Sbjct: 45 PPYLVEALAYAMAA-----GHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAG 99
Query: 144 A-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE 202
A ++ + + L+ V V DPS+ +Y + G G+ V + +P
Sbjct: 100 ATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAG---------GR---AVRVALQPP 147
Query: 203 NNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQ--LKKLVEFAKANGSIIVYDSA 255
+ F D + RT +I +P+NP+G W ++ L + ++ D
Sbjct: 148 D-FRVDWQRFAAAISPRTRLIILNTPHNPSG--TVWSAADMRALWQLIAGTDIYVLSDEV 204
Query: 256 YAAYITDPSP-RSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304
Y + D + S+ P RE A +SSF K TG ++G+ V P L
Sbjct: 205 YEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAAL 254
|
Length = 386 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 82/408 (20%), Positives = 147/408 (36%), Gaps = 78/408 (19%)
Query: 74 LIRLGIGDTTQP----IPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKF 127
+I+L +GD T P I T A+ E V + GY G+ R A+A +
Sbjct: 35 IIKLSVGDPTLDGNLLTPAIQTKALVE------AVDSQECNGYPPTVGSPEAREAVATYW 88
Query: 128 YKDMG--------IEGDE-IFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIV 178
I+ D + S + + + L L + V P FP Y
Sbjct: 89 RNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHY------- 141
Query: 179 GQAGKFLKETGKYRNIV--YMNCRPENNFFPDLS-----TTSRTDIIFFCSPNNPTGHAA 231
+ K I + NCRPE ++ DL RT + +P+NP G
Sbjct: 142 -------ETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNF 194
Query: 232 TWQQLKKLVEFAKANGSIIVYDSAYA------------AYITDPSPRSIYEIPGAREVAI 279
+ + ++ ++ + ++ D YA A PR I
Sbjct: 195 SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVI----------- 243
Query: 280 EISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL 339
+ +K G RLGW ++ + + NG + R + G ++VQA L
Sbjct: 244 -LGGTAKNLVVPGWRLGWLLLVD--PHGNGGDFLDGMKR-LGMLVCGPCSVVQAALGEAL 299
Query: 340 SPDGFQALRTVIDYYKENAKIIVDAFQS-LGLKVNGGKNAPYVWVQFPGSSSWDV----- 393
+ L ++ +E A ++ + +GL + + ++ + D+
Sbjct: 300 LNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVE 359
Query: 394 -FAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440
+ ++LE+ ++ +PG F G R++ E + EA R+K F
Sbjct: 360 FYEKLLEEENVQVLPGEIFHMPG--FTRLTISRPVEVLREAVERIKAF 405
|
Length = 412 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 41/216 (18%)
Query: 204 NFFPDL----STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAY 259
N+ DL +++ CSPNNPTG+ Q L+ L+E +I+V D AY +
Sbjct: 131 NWQLDLPAIADNLDGVKVVYVCSPNNPTGNLINPQDLRTLLELT-RGKAIVVADEAYIEF 189
Query: 260 ITDPSPRSIYEIPGAREVAIEISSFSK-FAGFTGVRLGWTVVPEEL---------RYSNG 309
P + + I + + SK FA G+R G+T+ EE+ Y
Sbjct: 190 --CPQASLAGWLAEYPHLVI-LRTLSKAFA-LAGLRCGFTLANEEVINLLLKVIAPYPLS 245
Query: 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL- 368
PV A QA LSP G A+R + N + ++ A + +
Sbjct: 246 TPV--------------ADIAAQA-----LSPQGIAAMRERVAEINANRQWLIAALKEIP 286
Query: 369 GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHIL 404
++ Y+ +F SS+ VF + ++ IL
Sbjct: 287 CVEQVFDSETNYILARFTASSA--VFKSLWDQGIIL 320
|
Length = 351 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 26/238 (10%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKG-YKGYGAEQGNMALRTAIADKFYKDMG 132
++ LG GD + P T+ AE A A + G Y Y G + R AIA+ +D+
Sbjct: 54 VLPLGHGDPS-AFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLP 112
Query: 133 IE--GDEIFISDGAQSDISRLQMLL---GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE 187
E D+I+++ G I + +L G+N+ + P +P Y +V G +
Sbjct: 113 YELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLP--RPGYPLYEARAVFSGLEVR---- 166
Query: 188 TGKYRNIVYMNCRPENNFFPDLSTT-----SRTDIIFFCSPNNPTGHAATWQQLKKLVEF 242
+ + PE + DL T + +PNNP G +++ L K+ E
Sbjct: 167 --------HFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAET 218
Query: 243 AKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300
A+ G +++ D Y P + G + + S SK G RLGW
Sbjct: 219 ARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIAT 276
|
Length = 430 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 19/207 (9%)
Query: 106 GYKGYGAEQGNMALRTAIADKFYKDMGIEGD---EIFI----SDGAQSDISRLQMLLGSN 158
G+ Y G ALR A+A+K + G D E+ + S+G + IS L+
Sbjct: 58 GHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAIS---ALVHPG 114
Query: 159 VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDII 218
V +PSF +Y + G +K + + + + + T RT +I
Sbjct: 115 DEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAA--------AITPRTRMI 166
Query: 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEIPGAREV 277
+P+NP+ + L +L + + +I+ D Y + D + S+ E
Sbjct: 167 IVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAER 226
Query: 278 AIEISSFSKFAGFTGVRLGWTVVPEEL 304
++ +SSF K TG R+G+ + P EL
Sbjct: 227 SVIVSSFGKSYHVTGWRVGYCLAPAEL 253
|
Length = 384 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 4e-06
Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 35/245 (14%)
Query: 71 DARL-IRLGIGDTTQPIPDIITSAMAEHAF--ALSTVKGYKGYGAEQGNMALRTAIADKF 127
D RL I G GD + T+ +AE A A+ + K + Y G + R AIAD
Sbjct: 30 DHRLAISFGFGDPSC-FECFRTTNIAEDAIVEAVRSAK-FNSYAPTGGILPARRAIADYL 87
Query: 128 YKDM--GIEGDEIFISDGAQSDIS-RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKF 184
D+ + D+++++ G + +++L + + P FP
Sbjct: 88 SNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDV------------- 134
Query: 185 LKETGKYRNIVYMNCR-----PENNFFPDLSTTS-----RTDIIFFCSPNNPTGHAATWQ 234
ET Y ++ R PE + DL T + +P NP G +++
Sbjct: 135 --ET--YAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYE 190
Query: 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294
L K+ E A+ G +++ D Y + P + + I + S SK G
Sbjct: 191 HLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWG 250
Query: 295 LGWTV 299
LGW V
Sbjct: 251 LGWLV 255
|
Length = 409 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 6e-06
Identities = 64/251 (25%), Positives = 96/251 (38%), Gaps = 48/251 (19%)
Query: 68 KHPDARLIRLGIGDTTQPIPDIITSAMAEHAFA--LSTVKGYKGYGAEQGNMALRTAIAD 125
K + ++ LG GD + P T AE A L + KG YG G + R A+AD
Sbjct: 62 KDVNKTILPLGHGDPSV-YPCFRTCIEAEDAVVDVLRSGKG-NSYGPGAGILPARRAVAD 119
Query: 126 KFYKDM--GIEGDEIFISDGAQSDIS-RLQMLLGSNVTVAVQDPSFPAYIDTSVIVG-QA 181
+D+ + ++IF++ G I + L N + + P FP Y + G +
Sbjct: 120 YMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEV 179
Query: 182 GKFLKETGKYRNIVYMNCRPENNFFPDLS-----TTSRTDIIFFCSPNNPTGHAATWQQL 236
KF + PE + DL T + +PNNP G+ + L
Sbjct: 180 RKF-------------DLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHL 226
Query: 237 KKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG------F 290
KK+ E A+ G +++ D Y I +P S KFA
Sbjct: 227 KKVAETARKLGIMVISDEVYDRTIFGDNP---------------FVSMGKFASIVPVLTL 271
Query: 291 TGVRLGWTVVP 301
G+ GW VVP
Sbjct: 272 AGISKGW-VVP 281
|
Length = 462 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 64/303 (21%), Positives = 114/303 (37%), Gaps = 55/303 (18%)
Query: 160 TVAVQDPSFPAYIDTSVIVGQAGKFLKET------GKYRNIVYMNCRPENNFFPDLST-- 211
V VQ P +P ++ V G+ L G+YR + DL
Sbjct: 109 GVIVQTPVYPPFLSA---VKSNGRELVLNPLKLDPGRYR----FD-------LEDLEDAI 154
Query: 212 TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE- 270
T + ++ CSP+NP G T ++L +L E + ++V D +A + P+
Sbjct: 155 TEKARLLLLCSPHNPVGRVWTREELTRLAELCLRHNVVVVSDEIHADLVYPPNKHIPLAS 214
Query: 271 -IPGAREVAIEISSFSKFAGFTGVRLGWTVVPE-ELRYSNGYPVIKDFNRIVCTCFNGAS 328
P E + + S K G+ + + ++P ELR + F A+
Sbjct: 215 LSPEIAERTVTLLSPGKTFNIAGLNISFAIIPNPELRRA----------------FQEAA 258
Query: 329 NIVQAGGLACLSPDGFQA--------LRTVIDYYKENAKIIVDAFQS--LGLKVNGGKNA 378
V F+A L ++ Y + N ++ + ++V +
Sbjct: 259 QRVHIQHGNLFGYVAFEAAYREGEPWLDALLAYLRGNRDLVEEFIAKRLPQIRVRPPEAT 318
Query: 379 PYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACR 435
W+ G D+ A +E+ + PG FG GG+ +R++ FG R + +A
Sbjct: 319 YLAWLDCRALGLDDADLRAFFIEQAGLGLNPGISFGDGGSGFMRLN-FGCPRSTLEQALE 377
Query: 436 RLK 438
RL+
Sbjct: 378 RLR 380
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 200 RPENNFFPDL----STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSA 255
R + + + T D +F C+PNNPTG Q L+ + E K+ ++ D A
Sbjct: 124 READGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEA 183
Query: 256 YAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299
+ +I D I ++ + + + S +KF G+RLG+ V
Sbjct: 184 FIDFIPD-ETGFIPQLADNPHLWV-LRSLTKFYAIPGLRLGYLV 225
|
Length = 356 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 212 TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI 271
T + ++F SPNNP G + L K++E ++V D AY + T S + +
Sbjct: 173 THKPKLLFLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQES--RMKWV 226
Query: 272 PGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304
+ I + +FSK AG G+R+G+ P +
Sbjct: 227 K-KYDNLIVLRTFSKRAGLAGLRVGYGAFPLSI 258
|
Length = 380 |
| >gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDPSPRSIYEIPGA 274
+++ +P+NP G +W +V F +A +++V D AY T P + I
Sbjct: 158 LVYLANPDNPMG---SWHPAADIVAFIEALPETTLLVLDEAYCE--TAP-AGAAPPIDTD 211
Query: 275 REVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFN--GASNIVQ 332
I + +FSK G G R+G+ + IK F+++ N G + I Q
Sbjct: 212 DPNVIRMRTFSKAYGLAGARVGYAIGAPG--------TIKAFDKVR----NHFGMNRIAQ 259
Query: 333 AGGLACLS 340
A LA L
Sbjct: 260 AAALAALK 267
|
Length = 369 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 72/303 (23%), Positives = 119/303 (39%), Gaps = 53/303 (17%)
Query: 109 GYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDP 166
GY +G + R +A+ K G I D+I +G I+++ LL V P
Sbjct: 68 GYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLLRREARVIGPSP 127
Query: 167 SFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDI--------- 217
++ + +S AG Y + Y PENN++PDL D+
Sbjct: 128 AYSTH--SSAEAAHAG--------YPPVTY-RLDPENNWYPDLD-----DLENKVKYNPS 171
Query: 218 ---IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPG 273
I +P+NPTG + L+++V+ A+ I+ D Y + + E+ G
Sbjct: 172 IAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIG 231
Query: 274 AREV-AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKD--FNRIVCTCFNGASNI 330
+V I + SK + G R GW V Y KD F + + + N
Sbjct: 232 --DVPGIALKGISKELPWPGSRCGWIEV---------YNADKDEVFKKYINSILNAKMIE 280
Query: 331 VQAGGL------ACLSPDGFQA-LRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVW 382
V + L +S ++ L+ Y++ + I + + + GLKVN A Y+
Sbjct: 281 VCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMT 340
Query: 383 VQF 385
V F
Sbjct: 341 VVF 343
|
Length = 433 |
| >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 42/189 (22%), Positives = 69/189 (36%), Gaps = 33/189 (17%)
Query: 207 PDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR 266
+ ++F C+PNNPTG +++L+E +I+V D AY + + S
Sbjct: 140 DYIEQLDGAKLVFICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPEYSVA 197
Query: 267 SIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE-----LRYSNGYPVIKDFNRIVC 321
+ + + + + SK G R G+T+ EE +R YPV + I
Sbjct: 198 DLLA---SYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRVIAPYPVPLPVSEIA- 253
Query: 322 TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG----LKVNGGKN 377
QA LS G ++ + + A G L+ NG
Sbjct: 254 ---------TQA-----LSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLEGNGN-- 297
Query: 378 APYVWVQFP 386
YV +F
Sbjct: 298 --YVLAKFD 304
|
Length = 354 |
| >gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 208 DLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS 267
+ S ++F CSP+NP G A Q+++ ++ A +++V D AY + PS
Sbjct: 146 AAALASNAKLVFLCSPSNPAGSAIALDQIERALQ-ALQGKALVVVDEAYGEFSDVPSAVG 204
Query: 268 IYEIPGAR--EVAIEISSFSKFAGFTGVRLGWTVVPEEL-----RYSNGYPV 312
+ AR +A+ + + SK R+G + EL R YPV
Sbjct: 205 LL----ARYDNLAV-LRTLSKAHALAAARIGSLIANAELIAVLRRCQAPYPV 251
|
Length = 364 |
| >gnl|CDD|180188 PRK05664, PRK05664, threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR 275
D++ +PNNPTG +L A G +V D A+ D +P+ R
Sbjct: 126 DVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAF----MDNTPQHSLAACAHR 181
Query: 276 EVAIEISSFSKFAGFTGVRLG 296
I + SF KF G G RLG
Sbjct: 182 PGLIVLRSFGKFFGLAGARLG 202
|
Length = 330 |
| >gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 19/155 (12%)
Query: 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYR----NIVYMNCRPENNFF 206
L+ L + TV V +P++P +++ I AG +KE YR ++ +
Sbjct: 117 LKRFLPAGTTVYVSNPTWPNHVN---IFKSAGLNVKE---YRYYDPKTKGLDF---DGML 167
Query: 207 PDLSTTSRTDIIFF--CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS 264
DL T ++ C+ +NPTG T +Q K++ + K I +D AY + +
Sbjct: 168 EDLRTAPNGSVVLLHACA-HNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDL 226
Query: 265 PRSIYEIP--GAREVAIEIS-SFSKFAGFTGVRLG 296
+ Y I R V ++ SFSK G G R+G
Sbjct: 227 DKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIG 261
|
Length = 404 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 43 NVNMESLQSGYLFPEISMRE-SEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFAL 101
N ++ LQ Y F + +R + D I L IG+ P P I A+A + L
Sbjct: 2 NPRLDRLQP-YPFEK--LRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALAANLDGL 58
Query: 102 STVKGYKGYGAEQGNMALRTAIAD 125
++ Y G ALR AIA
Sbjct: 59 AS------YPTTAGLPALREAIAA 76
|
Length = 396 |
| >gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYEIPGA 274
++F PNNPTG+ +++++E A ++V D AY + D S PR + P
Sbjct: 156 LVFLAYPNNPTGNLFDDADVERIIE---AAPGLVVVDEAYQPFAGD-SWLPR-LARFPN- 209
Query: 275 REVAIEISSFSKFAGFTGVRLG 296
+ + + SK G G+RLG
Sbjct: 210 ---LLVMRTVSKL-GLAGLRLG 227
|
Length = 356 |
| >gnl|CDD|173269 PRK14808, PRK14808, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.002
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR 275
D++F +PNNPTGH ++++++++ G+ + D AY + S ++
Sbjct: 140 DVVFIPNPNNPTGHVFEREEIERILK----TGAFVALDEAYYEF----HGESYVDLLKKY 191
Query: 276 EVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI 319
E I +FSK R+G+ V E+ I +NR+
Sbjct: 192 ENLAVIRTFSKAFSLAAQRIGYVVSSEKF--------IDAYNRV 227
|
Length = 335 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 441 | |||
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 100.0 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.98 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.98 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.98 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.98 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.97 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.97 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.97 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.97 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.97 | |
| PLN02721 | 353 | threonine aldolase | 99.97 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.96 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.96 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.96 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.96 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.96 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.96 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.96 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.96 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.96 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.96 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.96 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.96 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.96 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.96 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.96 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.96 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.96 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.96 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.96 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.96 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.95 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.95 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.95 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.95 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.95 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.95 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.95 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.95 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.95 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.94 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.94 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.94 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.94 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.94 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.94 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.94 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.94 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.93 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.93 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.93 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.93 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.93 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.92 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.92 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.92 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.92 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.92 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.92 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.92 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.92 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.91 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.91 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.91 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.91 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.91 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.91 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.91 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.91 | |
| PLN02651 | 364 | cysteine desulfurase | 99.91 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.91 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.9 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.9 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.9 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.9 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.9 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.9 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.89 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.89 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.89 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.89 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.89 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.88 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.88 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.88 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.88 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.88 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.88 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.88 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.87 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.87 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.87 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.87 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.87 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.87 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.87 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.87 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.87 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.86 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.86 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.86 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.86 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.85 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.85 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.85 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.85 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.85 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.85 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.85 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.85 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.85 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.85 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.84 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.84 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.84 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.83 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.83 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.83 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.83 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.83 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.83 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.82 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.82 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.82 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.81 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.81 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.81 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.81 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.81 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.8 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.8 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.8 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.8 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.8 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.8 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.78 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.77 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.77 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.77 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.76 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.76 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.76 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.76 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.75 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.75 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.74 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.74 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.74 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.74 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.73 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.73 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.73 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.72 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.72 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.71 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.71 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.71 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.71 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.7 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.7 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.7 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.7 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.7 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.69 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.69 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.69 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.68 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.68 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.68 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.68 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.66 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.66 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.66 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.65 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.64 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.63 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.62 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.61 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.61 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.61 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.6 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.6 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.6 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.6 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.59 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.59 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.59 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.59 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.59 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.58 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.58 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.58 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.57 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.57 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.57 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.57 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.57 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.57 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.57 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.56 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.56 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.56 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.56 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.55 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.55 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.55 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.55 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.55 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.54 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.54 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.54 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.54 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.54 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.54 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.53 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.53 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.53 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.51 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.51 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.5 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.5 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.5 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.5 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.49 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.48 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.47 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.45 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.44 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.44 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.44 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.43 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.42 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.42 | |
| PLN02263 | 470 | serine decarboxylase | 99.41 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.39 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.39 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.39 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.38 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.38 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.38 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.36 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.32 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.32 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.32 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.27 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.25 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.25 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.22 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.22 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.19 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.18 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.14 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.13 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.06 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.03 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.94 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.84 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.81 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.71 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.67 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.64 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.59 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.44 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.43 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.4 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.33 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.16 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.1 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 97.93 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 97.69 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 97.54 | |
| COG1725 | 125 | Predicted transcriptional regulators [Transcriptio | 97.52 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.33 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 97.08 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 96.97 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 96.97 | |
| PRK10079 | 241 | phosphonate metabolism transcriptional regulator P | 96.54 | |
| TIGR02325 | 238 | C_P_lyase_phnF phosphonates metabolism transcripti | 96.41 | |
| TIGR02404 | 233 | trehalos_R_Bsub trehalose operon repressor, B. sub | 96.39 | |
| PRK14999 | 241 | histidine utilization repressor; Provisional | 96.27 | |
| PRK11402 | 241 | DNA-binding transcriptional regulator FrlR; Provis | 96.27 | |
| COG2188 | 236 | PhnF Transcriptional regulators [Transcription] | 96.22 | |
| PF00392 | 64 | GntR: Bacterial regulatory proteins, gntR family; | 96.17 | |
| TIGR02018 | 230 | his_ut_repres histidine utilization repressor, pro | 96.14 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.11 | |
| PRK09764 | 240 | DNA-binding transcriptional repressor MngR; Provis | 95.78 | |
| TIGR03337 | 231 | phnR transcriptional regulator protein. This famil | 93.51 | |
| PRK04984 | 239 | fatty acid metabolism regulator; Provisional | 93.35 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 93.22 | |
| PF14502 | 48 | HTH_41: Helix-turn-helix domain | 93.07 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 92.59 | |
| PRK10225 | 257 | DNA-binding transcriptional repressor UxuR; Provis | 91.17 | |
| COG2186 | 241 | FadR Transcriptional regulators [Transcription] | 91.14 | |
| TIGR02812 | 235 | fadR_gamma fatty acid metabolism transcriptional r | 90.87 | |
| TIGR03338 | 212 | phnR_burk phosphonate utilization associated trans | 90.61 | |
| PRK09464 | 254 | pdhR transcriptional regulator PdhR; Reviewed | 90.46 | |
| PRK11523 | 253 | DNA-binding transcriptional repressor ExuR; Provis | 90.31 | |
| PRK09990 | 251 | DNA-binding transcriptional regulator GlcC; Provis | 89.96 | |
| PRK10421 | 253 | DNA-binding transcriptional repressor LldR; Provis | 89.95 | |
| PRK03837 | 241 | transcriptional regulator NanR; Provisional | 89.36 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 88.71 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 87.17 | |
| PRK11534 | 224 | DNA-binding transcriptional regulator CsiR; Provis | 86.4 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 84.54 | |
| PRK11414 | 221 | colanic acid/biofilm transcriptional regulator; Pr | 83.9 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 82.38 |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-61 Score=465.19 Aligned_cols=344 Identities=33% Similarity=0.532 Sum_probs=307.4
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh--CCCCCCc-EEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD--MGIEGDE-IFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~--~~~~~~~-I~~t~G~~~al 148 (441)
.++|+|++|+|+++.|+.+.+++.+++.+ ... +|.+..|.++||++||+++.+. ..+++++ |++|+|+++|+
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~----~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al 102 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEE----GGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEAL 102 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhc----ccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHH
Confidence 47999999999999999999999998875 223 6779999999999999999874 4567766 99999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC-CCccCCCCC-----CCCccEEEEc
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE-NNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~~-----~~~~~~v~i~ 221 (441)
.. +..+++|||+|++++|.|+.|......+| .+++.++++.+ ++|.++.+. .+++|+|++|
T Consensus 103 ~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~g------------g~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln 170 (393)
T COG0436 103 FLAFLALLNPGDEVLIPDPGYPSYEAAVKLAG------------GKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILN 170 (393)
T ss_pred HHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcC------------CEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEe
Confidence 97 68889999999999999999999999999 58999998655 488887653 4689999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
+||||||.+++++++++|+++|++||++||.||+|.++.+++. +.++.++.+..+++|.++||||.++++|||+||+++
T Consensus 171 ~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~ 250 (393)
T COG0436 171 SPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVG 250 (393)
T ss_pred CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeec
Confidence 9999999999999999999999999999999999999999984 778888765568999999999999999999999999
Q ss_pred e-ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC-CC
Q 013521 301 P-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-FQALRTVIDYYKENAKIIVDAFQSL-GLKVNG-GK 376 (441)
Q Consensus 301 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~ 376 (441)
+ +.+ ++.+..++.....+++.+.|.++.++|+... ...++.+++.|++||+.+.+.|.+. |+.+.. |.
T Consensus 251 ~~~~l--------~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~ 322 (393)
T COG0436 251 PPEEL--------IAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPE 322 (393)
T ss_pred ChHHH--------HHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCC
Confidence 9 555 5666677888888899999999999999653 3567888899999999999999988 698877 67
Q ss_pred CceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCC-CCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 377 NAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPG-GNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 377 ~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+++|+|++++. .++.+++.+|++++||.|.||+.|+.. +.++||||++.+.+.+++++++|+++
T Consensus 323 Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~ 388 (393)
T COG0436 323 GAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARF 388 (393)
T ss_pred eeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHHHH
Confidence 99999999985 688999999999999999999999985 89999999998889999999999875
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=454.81 Aligned_cols=395 Identities=49% Similarity=0.864 Sum_probs=320.9
Q ss_pred cccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHH
Q 013521 45 NMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIA 124 (441)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 124 (441)
.+..+..++.|.++..+......++.++++++|+.|+|++++++.+.+++.+++.+........+|++..|..+||+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia 86 (409)
T PRK07590 7 NYLKLKAGYLFPEIARRVNAFREANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIA 86 (409)
T ss_pred ccCccCCcchHHHHHHHHHHHhhhcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHH
Confidence 34455555778888887777777776678999999999999899999999998876432235678988999999999999
Q ss_pred HHHhh--hCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC
Q 013521 125 DKFYK--DMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE 202 (441)
Q Consensus 125 ~~l~~--~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~ 202 (441)
+|+.+ ++++++++|++|+|+++++.++..++++||+|++++|+|+.+...++..|.++.. .....+.+++.++++.+
T Consensus 87 ~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~-~~~~~~~~~~~v~~~~~ 165 (409)
T PRK07590 87 ENDYQARGCDISADEIFISDGAKCDTGNILDIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEA-NEDGRYSGIVYLPCTAE 165 (409)
T ss_pred HHHHHhcCCcCChhhEEECCCHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCcccc-cccccccceeEeecccc
Confidence 99864 6788999999999999999987777899999999999999999999999954221 11111124889998766
Q ss_pred CCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEE
Q 013521 203 NNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEI 281 (441)
Q Consensus 203 ~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i 281 (441)
+++.+++.. +++|++++||||||||.+||.+++++|+++|++||++||+||+|.+|.+++. +.++..++...+++|++
T Consensus 166 ~~~~~d~~~-~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~ 244 (409)
T PRK07590 166 NNFVPELPE-EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEF 244 (409)
T ss_pred cCCcccCcc-cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEE
Confidence 677777654 6899999999999999999999999999999999999999999999887653 45666665445689999
Q ss_pred ecCCcccCCccceeEEEEeeccccccC----CchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVVPEELRYSN----GYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKEN 357 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 357 (441)
+||||.+|+||+|+||+++|++++..- .......+.......+.+++.+.|.++.+++.+.+..|++++++.++++
T Consensus 245 ~SfSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 324 (409)
T PRK07590 245 RSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMEN 324 (409)
T ss_pred ecCccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 999999999999999999998885210 0000011222223334457889999998888765567899999999999
Q ss_pred HHHHHHHHHhCCCeeeCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHH
Q 013521 358 AKIIVDAFQSLGLKVNGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRR 436 (441)
Q Consensus 358 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~ 436 (441)
++.+.+.|+++|+.+.++.+|+|+|++++. .++.+++..+++++||.+.||+.|+..+.+++||+++.+++++++++++
T Consensus 325 r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~r 404 (409)
T PRK07590 325 AKIIREGLESAGFEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMER 404 (409)
T ss_pred HHHHHHHHHhcCCceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHHHHHHHHHH
Confidence 999999999988888877899999999984 4567788888888899999999998766789999987789999999999
Q ss_pred HHhhC
Q 013521 437 LKNFL 441 (441)
Q Consensus 437 l~~~l 441 (441)
|++++
T Consensus 405 l~~~~ 409 (409)
T PRK07590 405 IKKAL 409 (409)
T ss_pred HHhhC
Confidence 99875
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=440.74 Aligned_cols=397 Identities=53% Similarity=0.926 Sum_probs=318.1
Q ss_pred cccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHH
Q 013521 43 NVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTA 122 (441)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 122 (441)
|+....+.++++|..+.........+.++.++++|+.|+|+.++++.+.+++.+.+.+........+|++..|.++||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~a 83 (402)
T TIGR03542 4 NPHFLKLKSSYLFSEINRRVNEFRKKHPSADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREA 83 (402)
T ss_pred CCCccccCcchHHHHHHHHHHHHHhccCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHH
Confidence 44445555556777777777766655566789999999999988999999999988764321234579888999999999
Q ss_pred HHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC
Q 013521 123 IADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE 202 (441)
Q Consensus 123 ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~ 202 (441)
+|+++.+. ++++++|++|+|+++++.++..++.+||+|++++|+|+.+...++..|..|..... ..+.+++.++.+.+
T Consensus 84 ia~~~~~~-~~~~d~I~it~Ga~~al~~l~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~v~~~~~ 161 (402)
T TIGR03542 84 IAENDYRG-RIDPEEIFISDGAKCDVFRLQSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDD-GRYSKITYLPCTKE 161 (402)
T ss_pred HHHHHHhc-CCCHHHEEECCCcHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCccccccc-cccceEEEeecchh
Confidence 99987542 48999999999999999987777899999999999999999999999953322111 11127888888766
Q ss_pred CCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEE
Q 013521 203 NNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEI 281 (441)
Q Consensus 203 ~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i 281 (441)
+++.+++....++++|++||||||||.++|.+++++|+++|++|+++||+||+|.+|.+++. +.++..+++..+++|++
T Consensus 162 ~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~ 241 (402)
T TIGR03542 162 NNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEF 241 (402)
T ss_pred hCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEE
Confidence 67777765556899999999999999999999999999999999999999999999987653 45565665445789999
Q ss_pred ecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
+||||.||+||+|+||+++|++++........+.+.........+++.+.|.++.+++.+..+.++.+.++.++++++.+
T Consensus 242 ~SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (402)
T TIGR03542 242 RSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARIL 321 (402)
T ss_pred ecCccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887411111111233222333444578899999888888666666777889999999999
Q ss_pred HHHHHhCCCeeeCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 362 VDAFQSLGLKVNGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 362 ~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
.+.|++.|+++.++.+|+|+|++++. .++.+++..+++++||.+.||+.|+..+.+++||+++.+++++++++++|+++
T Consensus 322 ~~~L~~~~~~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 322 RKALEAAGFKVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVEACERIKEA 401 (402)
T ss_pred HHHHHhcCceecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHhh
Confidence 99999888888777789999999984 45678899989878999999999976667899999877899999999999987
Q ss_pred C
Q 013521 441 L 441 (441)
Q Consensus 441 l 441 (441)
|
T Consensus 402 ~ 402 (402)
T TIGR03542 402 L 402 (402)
T ss_pred C
Confidence 5
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-57 Score=448.46 Aligned_cols=392 Identities=24% Similarity=0.388 Sum_probs=316.5
Q ss_pred CcccchhhhHHhhhhCCC--CCccccccccccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCC-Cc-HH
Q 013521 14 PLKATVPFTMDFFLSSRW--PVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQP-IP-DI 89 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~-~~-~~ 89 (441)
++++||++||++|+.+|| +++|++.......... +......... ......++|+.|.++.. +| ..
T Consensus 40 vs~~Tv~~ay~~L~~~G~i~~~~gs~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~i~f~~g~p~~~~fp~~~ 108 (459)
T COG1167 40 VSRSTVSRAYEELEARGYIESRPGSAPPSGRPVRLE----------LLKPSDPELL-EDDPSVIDFAGGLPDPSLFPLEA 108 (459)
T ss_pred CcHHHHHHHHHHHHhCcceeeccCCCcccccccccc----------hhhhhhcccc-cCCCceecCCCCCCCcccCCHHH
Confidence 449999999999999999 9988844443221110 1111000000 22357899999976532 34 44
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHh-h-hCCCCCCcEEEcCCcHHHHHHH-HHhcCCCCEEEEeCC
Q 013521 90 ITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFY-K-DMGIEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDP 166 (441)
Q Consensus 90 ~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~-~-~~~~~~~~I~~t~G~~~al~~l-~~l~~~gd~Vlv~~p 166 (441)
+.+++.+.++.... .....|++..|..+||++|++|+. . ++.+++++|++|+|+++|++++ ..+++|||.|++++|
T Consensus 109 ~~~~~~~~~~~~~~-~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~P 187 (459)
T COG1167 109 LRRALARVLRNYGA-SLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDP 187 (459)
T ss_pred HHHHHHHHHhhcch-hhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 55566666654432 226788888999999999999997 3 8888999999999999999984 667899999999999
Q ss_pred CchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC---CCCccEEEEc-CCCCccccCCCHHHHHHHHH
Q 013521 167 SFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST---TSRTDIIFFC-SPNNPTGHAATWQQLKKLVE 241 (441)
Q Consensus 167 ~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~---~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~ 241 (441)
+|++...+++..| .+++.||+|++ +++++ ++. ..++|++|++ +.|||||.+||.+++++|++
T Consensus 188 tY~~~~~~~~~~g------------~~~~~vp~d~~-G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~ 254 (459)
T COG1167 188 TYPGALQALEALG------------ARVIPVPVDED-GIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLA 254 (459)
T ss_pred CcHHHHHHHHHcC------------CcEEecCCCCC-CCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHH
Confidence 9999999999999 69999999965 65554 332 2479999986 66999999999999999999
Q ss_pred HHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHH
Q 013521 242 FAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIV 320 (441)
Q Consensus 242 ~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~ 320 (441)
+|++||++|||||+|++|.+++. +.++..++. +++|||++||||+++ ||+|+||+++|+++ ++.+...+
T Consensus 255 lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~-~~rViy~gSFSK~l~-PglRlG~vv~p~~~--------~~~~~~~k 324 (459)
T COG1167 255 LAEKYDVLIIEDDYYGELRYDGPPPPPLKALDA-PGRVIYLGSFSKTLA-PGLRLGYVVAPPEL--------IEKLLRLK 324 (459)
T ss_pred HHHHcCCeEEeeCcchhhhcCCCCCCChHhhCC-CCCEEEEeeehhhcc-cccceeeeeCCHHH--------HHHHHHHH
Confidence 99999999999999999999865 445777753 689999999999996 99999999999988 57888888
Q ss_pred hhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhC---CCeeeCCCCceEEEEEcCC-CChHHHHH
Q 013521 321 CTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSL---GLKVNGGKNAPYVWVQFPG-SSSWDVFA 395 (441)
Q Consensus 321 ~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~-~~~~~~~~ 395 (441)
.....+++.+.|.+....+.++.+ +|++++++.|+++++.+.+.|+++ .+.+..|.+|+|+|++++. .++.+++.
T Consensus 325 ~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~~~~~l~~ 404 (459)
T COG1167 325 QAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGIDARELLA 404 (459)
T ss_pred HHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCCCHHHHHH
Confidence 888888999999999999985545 799999999999999999999997 4677888899999999984 46677777
Q ss_pred HHHHhcCeEEeC-CCCcCCCC--CCeEEEEeec-CHHHHHHHHHHHHhhC
Q 013521 396 EILEKTHILTIP-GSGFGPGG--NEHIRVSAFG-HREYISEACRRLKNFL 441 (441)
Q Consensus 396 ~ll~~~gi~v~p-g~~f~~~~--~~~iRls~~~-~~~~~~~~l~~l~~~l 441 (441)
.++++ |+.+.| |..|...+ .+++||+++. +.+++++++++|.+++
T Consensus 405 ~a~~~-gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~ 453 (459)
T COG1167 405 AALEK-GVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALL 453 (459)
T ss_pred HHHHC-CCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 77765 999999 99886543 6799999965 7899999999998753
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=444.96 Aligned_cols=378 Identities=19% Similarity=0.215 Sum_probs=303.2
Q ss_pred CcccchhhhHHhhhhCCC--CCccccccccccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHH
Q 013521 14 PLKATVPFTMDFFLSSRW--PVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIIT 91 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~ 91 (441)
++|+||.+||++|+++|| .++|+||||+..... .... . ...+..+++|+.|.|+.++++.+.
T Consensus 41 vsr~tv~~a~~~L~~~g~i~~~~~~G~~v~~~~~~-~~~~-------------~--~~~~~~~i~L~~g~p~~~~~p~~~ 104 (431)
T PRK15481 41 VNRNTVAAAYKRLVTAGLAQSQGRNGTVIRGSPSP-VALE-------------G--GDPGTPLHDLAGGNPDPQRLPDLS 104 (431)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCCCceEEccCcch-hhhc-------------c--cCCcchhhhhhcCCCChhHhHHHH
Confidence 349999999999999999 999999999742110 0000 0 011235789999988877666677
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchh
Q 013521 92 SAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPA 170 (441)
Q Consensus 92 ~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~ 170 (441)
+++.+... ....|++..|..+||+++++|+.+..+ .+++|++|+|+++++.+ +..+++|||.|++++|+|+.
T Consensus 105 ~~~~~~~~------~~~~Y~~~~g~~~lr~~ia~~~~~~~~-~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~ 177 (431)
T PRK15481 105 RYFARLSR------TPRLYGDAPVSPELHAWAARWLRDDCP-VAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLS 177 (431)
T ss_pred HHHHHhhh------hhhhcCCcCCCHHHHHHHHHHHhhccC-CcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHH
Confidence 77776543 234698889999999999999864322 45799999999999998 57788999999999999999
Q ss_pred hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEc-CCCCccccCCCHHHHHHHHHHHHHc
Q 013521 171 YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFC-SPNNPTGHAATWQQLKKLVEFAKAN 246 (441)
Q Consensus 171 ~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a~~~ 246 (441)
+...++..| .+++.++++++ +++++ +++ ..++|+++++ |||||||.++|.+++++|+++|++|
T Consensus 178 ~~~~~~~~g------------~~~~~v~~~~~-g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~ 244 (431)
T PRK15481 178 SINMLRYAG------------FSASPVSVDAE-GMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARY 244 (431)
T ss_pred HHHHHHHcC------------CeEEeeccCCC-CCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhc
Confidence 999999999 58999998754 44332 221 2478999998 9999999999999999999999999
Q ss_pred -CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcC
Q 013521 247 -GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFN 325 (441)
Q Consensus 247 -~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (441)
+++||+||+|.+|.+++.+ +.... ..+++|+++||||.|| ||+|+||+++|+++ ++.+.........
T Consensus 245 ~~~~ii~De~Y~~~~~~~~~-~~~~~--~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~--------~~~~~~~~~~~~~ 312 (431)
T PRK15481 245 PQVLVIIDDHFALLSSSPYH-SVIPQ--TTQRWALIRSVSKALG-PDLRLAFVASDSAT--------SARLRLRLNSGTQ 312 (431)
T ss_pred CCceEEecCchhhhccCCCC-CCCcC--CCCCEEEEeeeccccC-CCceeEEEeCCHHH--------HHHHHHHHhcccc
Confidence 9999999999998765422 22222 2468999999999999 99999999999887 4556554444444
Q ss_pred CCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeE
Q 013521 326 GASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHIL 404 (441)
Q Consensus 326 ~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 404 (441)
+++.++|.++.++|++..+ +|++++++.++++++.+.+.|+++|+.+..|++|+|+|++++. ++.+++..+. ++||.
T Consensus 313 ~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~-~~~~~~~~l~-~~gV~ 390 (431)
T PRK15481 313 WVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWLPLDT-DSQATALTLA-KSGWL 390 (431)
T ss_pred CCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEEEECCC-CHHHHHHHHH-HCCcE
Confidence 5899999999999987655 6889999999999999999999988887677899999999974 4567777766 46999
Q ss_pred EeCCCCcCCC-CCCeEEEEeec-CHHHHHHHHHHHHhhC
Q 013521 405 TIPGSGFGPG-GNEHIRVSAFG-HREYISEACRRLKNFL 441 (441)
Q Consensus 405 v~pg~~f~~~-~~~~iRls~~~-~~~~~~~~l~~l~~~l 441 (441)
+.||+.|+.. ..+++||+++. +++++++++++|++++
T Consensus 391 v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~ 429 (431)
T PRK15481 391 VREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQAL 429 (431)
T ss_pred EecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHh
Confidence 9999999642 35689999975 7899999999999874
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=432.15 Aligned_cols=346 Identities=23% Similarity=0.421 Sum_probs=289.2
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~a 147 (441)
+.++++|+.|++++++++.+.+++.+.+.. ....+|++..|..+||+++|+|+.+ +++++++ +|++|+|++++
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~a 104 (388)
T PRK07366 29 GKELIDLSLGSSDLPAPAHALEAIAQSLHD----PSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEG 104 (388)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhC----cccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHH
Confidence 457999999999998899999999887753 3456798889999999999999975 5668898 79999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..++++||.|++++|+|+.+...++..| .+++.++++.++++..+++. ..++|++++|
T Consensus 105 l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~ 172 (388)
T PRK07366 105 TAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAG------------GQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLS 172 (388)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcC------------CEEEEEECCCccCCCCCHHHHHHhhcccceEEEEe
Confidence 998 46678999999999999999999999999 58999999876666665432 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
|||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..++...+++|+++||||.||+||+|+||++
T Consensus 173 ~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v 252 (388)
T PRK07366 173 YPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAI 252 (388)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehc
Confidence 9999999999999999999999999999999999999987653 34566654434578999999999999999999999
Q ss_pred eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCce
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAP 379 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 379 (441)
+++++ ++.+...+.....+.+...+.++.+.+.+ ..+++++.++.++++++.+.+.|+++|+.+..|++|+
T Consensus 253 ~~~~l--------i~~l~~~~~~~~~~~~~~~~~~a~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~ 323 (388)
T PRK07366 253 GNAQL--------IQALRQVKAVVDFNQYRGILNGAIAALTG-PQATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATM 323 (388)
T ss_pred CCHHH--------HHHHHHHHhhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeE
Confidence 99887 45666655543333333344445666653 2578899999999999999999998888777778999
Q ss_pred EEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 380 YVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 380 ~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|+|++++.. ++.+++..+++++||.+.||+.|+..+.+++||+++.+++++++++++|++++
T Consensus 324 f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 324 YVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL 388 (388)
T ss_pred EEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence 999999842 46778888888889999999999766678999999888999999999999875
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=425.57 Aligned_cols=343 Identities=26% Similarity=0.483 Sum_probs=293.7
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCC-CcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEG-DEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~-~~I~~t~G~~~a 147 (441)
+.++++|+.|+|++++++.+.+++.+.+.. ....+|+ ..|..+||++||+|+.+ +..+++ ++|++|+|++++
T Consensus 31 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~----~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 105 (399)
T PRK07681 31 GHKMIDLSIGNPDMPPADFVREEMVHTANQ----KESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDG 105 (399)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhc----cccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHH
Confidence 457999999999988889999999887753 2334564 57999999999999975 566788 899999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..++++||.|++++|+|+.+...+...| .+++.+++++++++.++++. .++++++++|
T Consensus 106 l~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~ 173 (399)
T PRK07681 106 LVHLPMVYANPGDIILVPDPGYTAYETGIQMAG------------ATSYYMPLKKENDFLPDLELIPEEIADKAKMMILN 173 (399)
T ss_pred HHHHHHHhCCCCCEEEECCCCccchHHHHHhcC------------CEEEEEecCCCCCCcCCHHHHHHhccccceEEEEe
Confidence 998 56778999999999999999999999999 58999999876666555432 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
|||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..+++..+++|+++||||.+|+||+|+||+++
T Consensus 174 ~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~ 253 (399)
T PRK07681 174 FPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIG 253 (399)
T ss_pred CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEec
Confidence 9999999999999999999999999999999999999987653 345656654557899999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
|+++ ++.+.........+++.+.|.++.+++.+. ..++++.++.++++++.+.+.|+++|+++..+.+|+|
T Consensus 254 ~~~l--------~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~g~f 324 (399)
T PRK07681 254 NEEI--------VRALTQFKSNTDYGVFLPIQKAACAALRNG-AAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMF 324 (399)
T ss_pred CHHH--------HHHHHHHHhhcccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeeE
Confidence 8887 466666665555568899999999999753 4678899999999999999999998988877789999
Q ss_pred EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 381 VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 381 ~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
+|++++ +.++.+++..+++++||.+.||+.|+..+++++||+++.+++++++++++|++
T Consensus 325 ~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 325 VWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN 384 (399)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 999997 44677888999887899999999998666789999998888999999999987
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-54 Score=423.33 Aligned_cols=343 Identities=23% Similarity=0.357 Sum_probs=294.4
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~al 148 (441)
.++|+|+.|.|++++|+.+.+++.+.+.+ ...+|++..|.++||+++++|+.+ +..++++ +|++|+|+++++
T Consensus 54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al 128 (413)
T PLN00175 54 HGAINLGQGFPNFDGPDFVKEAAIQAIRD-----GKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAI 128 (413)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHHHHhc-----CCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHH
Confidence 46999999999998899999999988763 346899999999999999999976 5557787 799999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~~ 222 (441)
.+ +..+++|||+|++++|+|+.+...++..| .+++.++++.++ +..+++ . .+++|+|+++|
T Consensus 129 ~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~-~~~~~~~l~~~~~~~~k~i~i~~ 195 (413)
T PLN00175 129 AATILGLINPGDEVILFAPFYDSYEATLSMAG------------AKIKTVTLRPPD-FAVPEDELKAAFTSKTRAILINT 195 (413)
T ss_pred HHHHHHhCCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEEECCccc-CCCCHHHHHHhcCcCceEEEecC
Confidence 87 67788999999999999999999999998 589999987543 444322 1 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
||||||.++|.+++++|+++|++|+++||+||+|.++.+++.+.++..+++..+++|+++||||.|++||+|+||+++|+
T Consensus 196 p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~ 275 (413)
T PLN00175 196 PHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP 275 (413)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCH
Confidence 99999999999999999999999999999999999998865555676666556789999999999999999999999998
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVW 382 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 382 (441)
++ .+.+.........+++.+.|.++.++|++ +..++++.++.|+++++.+.+.|+++|+.+..+.+++|+|
T Consensus 276 ~l--------~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~~f~~ 346 (413)
T PLN00175 276 HL--------TWGVRQAHSFLTFATATPMQWAAVAALRA-PESYYEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVM 346 (413)
T ss_pred HH--------HHHHHHHHhhccCCCCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEE
Confidence 87 45666666655667899999999999974 3568899999999999999999999999888888999999
Q ss_pred EEcC--CC-ChHHHHHHHHHhcCeEEeCCCCcCC---CCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 383 VQFP--GS-SSWDVFAEILEKTHILTIPGSGFGP---GGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 383 ~~~~--~~-~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++++ +. ++.+++..+++++||.+.||+.|+. .+.++|||+++.+++++++++++|++++
T Consensus 347 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~ 411 (413)
T PLN00175 347 VDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKL 411 (413)
T ss_pred EeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHH
Confidence 9984 33 4678889998888999999999963 3467999999888999999999998864
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-54 Score=420.56 Aligned_cols=346 Identities=23% Similarity=0.426 Sum_probs=289.4
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~a 147 (441)
+.++++|+.|.|+.+.|+.+++++.+.+.. ....+|++..|..+||+++|+|+.+ ++.++++ +|++|+|++++
T Consensus 32 ~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a 107 (403)
T PRK08636 32 GEDIIDFSMGNPDGPTPQHIIDKLCESAQK----PKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG 107 (403)
T ss_pred CCCEEEcCCcCCCCCCCHHHHHHHHHHhcC----CccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence 457899999999887777788887776542 3457899889999999999999975 5667887 79999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC-------C-----CCC
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS-------T-----TSR 214 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~-------~-----~~~ 214 (441)
+.+ +..++++||.|++++|+|+.+...+...| .+++.++++.++++..+.+ + ..+
T Consensus 108 l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 175 (403)
T PRK08636 108 YVHLVQAITNPGDVAIVPDPAYPIHSQAFILAG------------GNVHKMPLEYNEDFELDEDQFFENLEKALRESSPK 175 (403)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcC------------CEEEEEeccccccCccChhhhhhHHHHHHhhccCC
Confidence 998 57788999999999999999999999999 5888888854443444422 1 257
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccc
Q 013521 215 TDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 215 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
++++++||||||||.++|.+++++|+++|++|+++||+||+|+++.+++. ..++..++...+++++++||||.||+||+
T Consensus 176 ~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl 255 (403)
T PRK08636 176 PKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGW 255 (403)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccc
Confidence 89999999999999999999999999999999999999999999987653 45666665445788999999999999999
Q ss_pred eeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013521 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN 373 (441)
Q Consensus 294 r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 373 (441)
|+||+++|+++ ++.+.........+++.+.|.++..++. ....+++++++.++++++.+.+.|++.|+.+.
T Consensus 256 RiG~iv~~~~l--------i~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 326 (403)
T PRK08636 256 RVGFVVGNKKL--------VGALKKIKSWLDYGMFTPIQVAATIALD-GDQSCVEEIRETYRKRRDVLIESFANAGWELQ 326 (403)
T ss_pred eeeeeeCCHHH--------HHHHHHHHHHhcccCChHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 99999999887 4566665554444567788888777665 33578899999999999999999999888887
Q ss_pred CCCCceEEEEEcCC----CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 374 GGKNAPYVWVQFPG----SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 374 ~~~~~~~~~~~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.+.+|+|+|++++. .++.+++..+++++||.+.||..|+..+++++||+++.+.+++++++++|++++
T Consensus 327 ~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~~l 398 (403)
T PRK08636 327 KPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKKFL 398 (403)
T ss_pred CCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 78899999999973 235778888888889999999999876678999999888899999999998764
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-54 Score=419.23 Aligned_cols=345 Identities=28% Similarity=0.464 Sum_probs=291.0
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~a 147 (441)
+.++++|+.|.|+.++++.+.+++.+.+.. ....+|++..|..+||+++|+|+.+ +.+++++ +|++|+|++++
T Consensus 31 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~ 106 (389)
T PRK08068 31 GHDVINLGQGNPDQPTPEHIVEALQEAAEN----PANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAG 106 (389)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHH
Confidence 356899999999888888888888887763 3456898889999999999999975 5557888 89999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..++++||.|++++|+|+.+...++..| .+++.++++.++++.++++. ..+++++++|
T Consensus 107 l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~ 174 (389)
T PRK08068 107 LVELPQCLMNPGDTILVPDPGYPDYLSGVALAR------------AQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLN 174 (389)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcC------------CEEEEeecccccCCCCCHHHHHHhccccceEEEEE
Confidence 987 57778999999999999999999999999 58999999766566655332 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
|||||||.++|.+++++|+++|++|+++||+||+|.++.+++ .+.++....+..+++++++||||.||+||+|+||+++
T Consensus 175 ~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~ 254 (389)
T PRK08068 175 YPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVG 254 (389)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEec
Confidence 999999999999999999999999999999999999988765 3445544433456889999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ ++.+.........+++.+.|.++.+++.+ +..+++++++.++++++.+.+.|+++|+.+.++.+|+|
T Consensus 255 ~~~l--------~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~~g~~~ 325 (389)
T PRK08068 255 NESV--------IEAINLLQDHLFVSLFGAIQDAAIEALLS-DQSCVAELVARYESRRNAFISACREIGWEVDAPKGSFF 325 (389)
T ss_pred CHHH--------HHHHHHHHhhccCCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEE
Confidence 8887 45666655544445566778888888863 34788999999999999999999999988887778899
Q ss_pred EEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 381 VWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+|+++++ .++.++...+++++||.+.||+.|+..+++++||+++.+++.+.+++++|+++
T Consensus 326 ~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 326 AWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 9999974 46778888888778999999999987667899999988889999999999874
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=416.90 Aligned_cols=343 Identities=26% Similarity=0.399 Sum_probs=291.0
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~ 149 (441)
.++++|+.|+|++++++.+.+++.+... ....+|++..|..+||+++|+|+.+ ++++++++|++|+|+++++.
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~-----~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~ 103 (384)
T PRK06348 29 PDIIDLSLGDPDLITDESIINAAFEDAK-----KGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMY 103 (384)
T ss_pred CCcEEcCCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHH
Confidence 3689999999998888877776665543 3456899999999999999999964 67789999999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSP 223 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p 223 (441)
+ +..++++||+|++++|+|+++...+...| .+++.++.++++++..+++. .++++++++++|
T Consensus 104 ~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p 171 (384)
T PRK06348 104 LALQSILDPGDEVIIHEPYFTPYKDQIEMVG------------GKPIILETYEEDGFQINVKKLEALITSKTKAIILNSP 171 (384)
T ss_pred HHHHHhcCCCCEEEEeCCCCcchHHHHHHcC------------CEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCC
Confidence 8 57778999999999999999999999998 47888887554555555332 357899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
|||||.++|.+++++|+++|++|+++||+||+|.++.+++.+.++..+++..+++|+++||||.+|+||+|+||+++|++
T Consensus 172 ~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~ 251 (384)
T PRK06348 172 NNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDY 251 (384)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHH
Confidence 99999999999999999999999999999999999988654445656654467899999999999999999999999987
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVW 382 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 382 (441)
+ ++.+.........+++.+.|.++..++.+ ...+++++++.++++++.+.+.|+++ ++.+.++.+|+|+|
T Consensus 252 ~--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~ 322 (384)
T PRK06348 252 I--------IETAKIINEGICFSAPTISQRAAIYALKH-RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAF 322 (384)
T ss_pred H--------HHHHHHHHHhccCCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEE
Confidence 7 45666666555556789999999888873 34678899999999999999999887 77878778899999
Q ss_pred EEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 383 VQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 383 ~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
++++ +.++.+++..+++++||.+.||+.|+..++++|||+++.+++++++++++|+++
T Consensus 323 ~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 323 INIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred EecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence 9997 356788888888878999999999987667899999987899999999999875
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=418.98 Aligned_cols=346 Identities=27% Similarity=0.469 Sum_probs=293.7
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~a 147 (441)
++++++|+.|+|++++|+.+++++.+.+.. ....+|++..|..+||+++|+|+.+ +..++++ +|++|+|++++
T Consensus 29 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 104 (405)
T PRK09148 29 GADIIDLGMGNPDLPTPQHIVDKLCETAQD----PRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEG 104 (405)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHcC----cccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence 457899999999988888889888887643 3456898889999999999999975 5567787 89999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..++++||.|++++|+|+.+...+...| .+++.++++.++.+..+++. .+++++++++
T Consensus 105 l~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g------------~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~ 172 (405)
T PRK09148 105 FANMAQAITAPGDVILCPNPSYPIHAFGFIMAG------------GVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVN 172 (405)
T ss_pred HHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcC------------CEEEEEeCCCCCCCccCHHHHHhhccccceEEEEe
Confidence 998 56778999999999999999998888888 58999998766555555432 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
+||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++.++++..+++++++||||.+|+||+|+||+++
T Consensus 173 ~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~ 252 (405)
T PRK09148 173 YPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG 252 (405)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeC
Confidence 9999999999999999999999999999999999999887653 345656654457789999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ ++.+...+.....+++.+.|.++.+++.+ ...+++++++.++++++.+.+.|+++++.+..+.+|+|
T Consensus 253 ~~~~--------i~~l~~~~~~~~~~~~~~~q~~~~~~L~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f 323 (405)
T PRK09148 253 NERL--------IAALTRVKSYLDYGAFTPIQVAATAALNG-PQDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAASMF 323 (405)
T ss_pred CHHH--------HHHHHHHHHHhccCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCeeEE
Confidence 8887 46677666655566788999999999974 34678999999999999999999998888777789999
Q ss_pred EEEEcCCC----ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFPGS----SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|++++.. ++.++...+++++||.+.||+.|+..+++++||+++.+.+.+.+++++|.+++
T Consensus 324 ~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l 388 (405)
T PRK09148 324 AWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFL 388 (405)
T ss_pred EEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 99999742 35678888887789999999999765678999999878899999999998763
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=398.04 Aligned_cols=356 Identities=28% Similarity=0.451 Sum_probs=300.3
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEE-eCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--
Q 013521 53 YLFPEISMRESEHIRKHPDARLIR-LGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-- 129 (441)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~i~-l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-- 129 (441)
++|.++.+...++. ..+ |++|.|++++|+.+.+++++++.+ ...++|++..|.++|+++|++.++.
T Consensus 18 ~vw~e~~~la~e~~-------~~~~LgqGfp~~~~P~fv~ea~~~~~~~----~~~~qYt~~~G~p~L~~aL~k~~se~~ 86 (420)
T KOG0257|consen 18 YVWTEINRLAAEHK-------VPNPLGQGFPDFPPPKFVTEAAKNAAKE----PSTNQYTRGYGLPQLRKALAKAYSEFY 86 (420)
T ss_pred cHHHHHHHHHHhcC-------CCCcccCCCCCCCCcHHHHHHHHHHhcc----chhccccccCCchHHHHHHHHHHHHHh
Confidence 67888888777653 233 999999999999999999999986 4677899999999999999999876
Q ss_pred -hCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecC------C
Q 013521 130 -DMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCR------P 201 (441)
Q Consensus 130 -~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~------~ 201 (441)
......++|++|+|+.+++.. ++.++++||+|++.+|.|+.|...+..+|. ..++++.. .
T Consensus 87 ~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~------------tpv~v~~~~~~g~~~ 154 (420)
T KOG0257|consen 87 GGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGG------------TPVFVPLKPKEGNVS 154 (420)
T ss_pred ccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCC------------cceeecccccccccc
Confidence 333456789999999999985 899999999999999999999999999995 55555555 2
Q ss_pred CCCccCCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCc
Q 013521 202 ENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAR 275 (441)
Q Consensus 202 ~~~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~ 275 (441)
...|.+|.+. ++++|+|++|+||||||.++|++++++|+++|++||++||.||+|..+.+++. +.++..++++.
T Consensus 155 s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ 234 (420)
T KOG0257|consen 155 SSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMY 234 (420)
T ss_pred CccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchh
Confidence 2345555332 58999999999999999999999999999999999999999999999999875 66788889999
Q ss_pred ceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-------HHHHH
Q 013521 276 EVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-------FQALR 348 (441)
Q Consensus 276 ~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-------~~~~~ 348 (441)
++++.++||||+||++|||+||+++|+.++ .....+........+.+.|.|..+++.... ..+..
T Consensus 235 ertitvgS~gKtf~~TGWrlGW~igp~~L~--------~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~ 306 (420)
T KOG0257|consen 235 ERTITVGSFGKTFGVTGWRLGWAIGPKHLY--------SALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFIT 306 (420)
T ss_pred heEEEeccccceeeeeeeeeeeeechHHhh--------hhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHH
Confidence 999999999999999999999999977663 455555666666678888888887776322 13456
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC-------------CChHHHHHHHHHhcCeEEeCCCCcCCCC
Q 013521 349 TVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG-------------SSSWDVFAEILEKTHILTIPGSGFGPGG 415 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 415 (441)
.+.+.|+++|+.+.+.|+++|+++..|++++|+|++++. .++-.+..+++++.|+.+.|++.|+...
T Consensus 307 ~~~~~y~~krdil~k~L~~lg~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~ 386 (420)
T KOG0257|consen 307 ELVKEYKEKRDILAKALEELGLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSRE 386 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCch
Confidence 699999999999999999999999999999999999971 1244577899999999999999997543
Q ss_pred -----CCeEEEEeecCHHHHHHHHHHHHh
Q 013521 416 -----NEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 416 -----~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
.+.+|++++.+.+.++.++++|+.
T Consensus 387 ~~~~~~~~~r~~~~k~~~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 387 HIKVAERLVRFCFCKADETLRKAIERLKK 415 (420)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 468899988899999999999973
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-53 Score=414.78 Aligned_cols=344 Identities=31% Similarity=0.512 Sum_probs=293.0
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~a 147 (441)
++++++|+.|+|++++++.+.+++.+.+.. ....+|++..|..+||+++|+|+.+ +..++++ +|++|+|++++
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~ 103 (383)
T TIGR03540 28 GVDVISLGIGDPDLPTPKHIVEALCKAAEN----PENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEG 103 (383)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHH
Confidence 467999999999988889999999987753 3456898889999999999999975 4555676 69999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..++++||.|++++|+|+.+...++..| .+++.++++.++++..+++. ..+++++++|
T Consensus 104 l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G------------~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~ 171 (383)
T TIGR03540 104 IAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAG------------GEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFIN 171 (383)
T ss_pred HHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcC------------CEEEEEecCcccCCccCHHHHHhhccccceEEEEe
Confidence 998 56678999999999999999999999999 58999999766566544322 3578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
|||||||.++|.+++++|+++|++||++||+||+|.++.+++ .+.++..+++..+++|+++||||.||+||+|+||+++
T Consensus 172 ~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~ 251 (383)
T TIGR03540 172 YPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVG 251 (383)
T ss_pred CCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeC
Confidence 999999999999999999999999999999999999988764 3455656554446789999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ ++.+.........+++.+.|.++.+++.+ ...|++++++.++++++.+.+.|+++|+.+.++.+|+|
T Consensus 252 ~~~l--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 322 (383)
T TIGR03540 252 NADL--------IAGLGKVKTNVDSGVFQAIQYAAIAALNG-PQDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFY 322 (383)
T ss_pred CHHH--------HHHHHHHHHhcccCCChHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCCcceE
Confidence 9887 45666665555556778899999999875 35788999999999999999999999998888788999
Q ss_pred EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 381 VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 381 ~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
+|++++ +.++.+++.++++++||.+.||+.|+..+++++||+++.+++++++++++|++
T Consensus 323 ~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 323 VWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence 999997 44677888888887899999999997656789999998888999999999976
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-53 Score=415.00 Aligned_cols=345 Identities=18% Similarity=0.272 Sum_probs=286.4
Q ss_pred CCeEEeCCCCCC-CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCC-CcEEEcCCcHHH
Q 013521 72 ARLIRLGIGDTT-QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEG-DEIFISDGAQSD 147 (441)
Q Consensus 72 ~~~i~l~~g~~~-~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~-~~I~~t~G~~~a 147 (441)
.+.++|+.|.++ .++|+.+.+++.+.+.. ....+|++..|..+||++||+|+.+ +..+++ ++|++|+|++++
T Consensus 39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~a 114 (405)
T PRK06207 39 GRPVDFSHGDVDAHEPTPGAFELFSAGVER----GGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGA 114 (405)
T ss_pred CCceecCCcCCCCCCCCHHHHHHHHHHHhc----CCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 468999999987 45677888888887754 3456798889999999999999987 444677 899999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC---CCCccCCCCC-----CCCccEE
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP---ENNFFPDLST-----TSRTDII 218 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~~~-----~~~~~~v 218 (441)
+.+ +..++++||+|++++|+|+.+...+...| .+++.++++. ++++..+++. ..+++++
T Consensus 115 l~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g------------~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v 182 (405)
T PRK06207 115 LFLAVAATVARGDKVAIVQPDYFANRKLVEFFE------------GEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVF 182 (405)
T ss_pred HHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEE
Confidence 997 57778999999999999999999999999 5888888752 2233334322 2578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
++||||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..++...+++++++||||.+++||+|+||
T Consensus 183 ~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ 262 (405)
T PRK06207 183 LFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGV 262 (405)
T ss_pred EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEE
Confidence 9999999999999999999999999999999999999999988653 334544443457899999999999999999999
Q ss_pred EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCC
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGK 376 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 376 (441)
+++|+++ ++.+.........+.+.++|.++.+++++ +..++++.++.++++++.+.+.|+++ ++.+..++
T Consensus 263 ii~~~~l--------~~~~~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~ 333 (405)
T PRK06207 263 AFGSPAI--------IDRMEKLQAIVSLRAAGYSQAVLRTWFSE-PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQ 333 (405)
T ss_pred EEcCHHH--------HHHHHHHHhHhccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC
Confidence 9999887 46666666555556788899999999974 23456777888889999999999887 78888778
Q ss_pred CceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 377 NAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 377 ~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|+|+|++++. .++.++...+++++||.+.||+.|+...++++||+++.+.+++++++++|++++
T Consensus 334 gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l 400 (405)
T PRK06207 334 AGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLI 400 (405)
T ss_pred eeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 89999999974 356778888877789999999999866688999999888899999999998763
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-53 Score=412.94 Aligned_cols=358 Identities=26% Similarity=0.414 Sum_probs=295.0
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--h
Q 013521 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--D 130 (441)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~ 130 (441)
+.|..+.........+.++.++++|++|+|++++++.+.+++.+.+.. .....|+ +.|..+||+++|+|+.+ +
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~----~~~~~Y~-~~G~~~lr~aia~~~~~~~g 99 (410)
T PRK06290 25 YKFEKIKRAKRAAKEKHPDMELIDMGVGEPDEMADESVVEVLCEEAKK----PENRGYA-DNGIQEFKEAAARYMEKVFG 99 (410)
T ss_pred hHHHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhC----CCCCCCC-CCCcHHHHHHHHHHHHHHcC
Confidence 445555554444444455668999999999998889999999887643 3345686 48999999999999975 4
Q ss_pred CC-CCCC-cEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccC
Q 013521 131 MG-IEGD-EIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFP 207 (441)
Q Consensus 131 ~~-~~~~-~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 207 (441)
+. ++++ +|++|+|+++++.+ +..++++||.|++++|+|+.+...++..| .+++.++++.++++.+
T Consensus 100 ~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~v~~v~~~~~~~~~~ 167 (410)
T PRK06290 100 VKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYG------------GEVYNLPLLEENNFLP 167 (410)
T ss_pred CCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcC------------CEEEEEecCCCcCCcC
Confidence 54 7786 79999999999988 56778999999999999999999999999 5899999987666665
Q ss_pred CCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEe
Q 013521 208 DLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEIS 282 (441)
Q Consensus 208 ~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 282 (441)
+++. ..++++|++||||||||.++|.+++++|+++|++||++||+||+|.++.+++.+.++..+.+..+++|+++
T Consensus 168 d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~ 247 (410)
T PRK06290 168 DLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIH 247 (410)
T ss_pred CHHHHHHhhcccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEe
Confidence 5432 25789999999999999999999999999999999999999999999887654556666654457889999
Q ss_pred cCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 013521 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 283 S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 362 (441)
||||.+|+||+|+||+++++++ ++.+.........+++.++|.++.+++.+. .++++.++.++++++.+.
T Consensus 248 SfSK~~g~~GlRiG~ii~~~~l--------~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~--~~~~~~~~~~~~~~~~l~ 317 (410)
T PRK06290 248 SLSKAYNMTGWRLAFVVGNELI--------VKAFATVKDNNDSGQFIAIQKAGIYALDHP--EITEKIREKYSRRLDKLV 317 (410)
T ss_pred echhhcCCchhheEeEEeCHHH--------HHHHHHHHhccccCCcHHHHHHHHHHhhCc--HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887 466666665555556778999999999753 467889999999999999
Q ss_pred HHHHhCCCeeeCCCCceEEEEEcCCC--------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec---CHHHHH
Q 013521 363 DAFQSLGLKVNGGKNAPYVWVQFPGS--------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG---HREYIS 431 (441)
Q Consensus 363 ~~L~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~---~~~~~~ 431 (441)
+.|+++|+.+.++.+++|+|++++.. ++.++.+.|+++.++.+.||+.|+ +++||+++. ++++.+
T Consensus 318 ~~L~~~g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~----~~lRi~~~~~~~~~~~~~ 393 (410)
T PRK06290 318 KILNEVGFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG----HFLRFSVTFEAKDEEEED 393 (410)
T ss_pred HHHHhCCCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc----CeEEEEEEcccccccchh
Confidence 99999999888888899999999732 567888999988788888988664 599999863 677788
Q ss_pred HHHHHHHhhC
Q 013521 432 EACRRLKNFL 441 (441)
Q Consensus 432 ~~l~~l~~~l 441 (441)
+.++.|++.|
T Consensus 394 ~~~~~l~~~~ 403 (410)
T PRK06290 394 RILEEIKRRL 403 (410)
T ss_pred HHHHHHHHHH
Confidence 8888887654
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=411.25 Aligned_cols=343 Identities=24% Similarity=0.399 Sum_probs=291.2
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++++|+.|+|++++|+.+.+++.+.+.. ...+|++..|..++|+++|+|+.+ ++++++++|++|+|+++++
T Consensus 31 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 105 (387)
T PRK08960 31 GHDVIHLEIGEPDFTTAEPIVAAGQAALAA-----GHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGAL 105 (387)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhc-----CCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHH
Confidence 457899999999988899999999998863 335798889999999999999975 5678999999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
++ +..++++||+|++++|+|+.+...+...| .+++.++++.++++..+++. .++++++++++
T Consensus 106 ~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~ 173 (387)
T PRK08960 106 LLASSLLVDPGKHWLLADPGYPCNRHFLRLVE------------GAAQLVPVGPDSRYQLTPALVERHWNADTVGALVAS 173 (387)
T ss_pred HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcC------------CeEEEEecCcccCCCCCHHHHHHHhCccceEEEEEC
Confidence 98 56678999999999999999999999888 58888888766555555432 35678899999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
||||||.++|.+++++|+++|++||++||+||+|.++.+++.+.++..+ ++++++++||||.+|+||+|+||+++|+
T Consensus 174 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~---~~~vi~~~S~SK~~g~~GlRiG~~~~~~ 250 (387)
T PRK08960 174 PANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEV---DDDAFVLNSFSKYFGMTGWRLGWLVAPP 250 (387)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhc---cCCEEEEeecccccCCcccEEEEEEcCH
Confidence 9999999999999999999999999999999999998876544455443 4679999999999999999999999998
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee-eCCCCceEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV-NGGKNAPYV 381 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~ 381 (441)
++ ++.+.........+++.+.|.++.+++.+....+++++++.++++++.+.+.|+++|+.+ ..|.+|+|+
T Consensus 251 ~~--------~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f~ 322 (387)
T PRK08960 251 AA--------VPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFYL 322 (387)
T ss_pred HH--------HHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEEE
Confidence 87 456666666555667899999999998754457889999999999999999999888764 356789999
Q ss_pred EEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCC-CCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 382 WVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPG-GNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 382 ~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|++++. .++.+++..+++++||.+.||+.|+.. .++++||+++.+.+.+.+++++|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~ 385 (387)
T PRK08960 323 YADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGL 385 (387)
T ss_pred EEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 999974 466778888888789999999999753 457999999888899999999998864
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-53 Score=412.15 Aligned_cols=345 Identities=31% Similarity=0.541 Sum_probs=291.7
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~a 147 (441)
+.++++|+.|+|++++++.+.+++.+.+.. ....+|++..|..+||+++|+|+.+ +..++++ +|++|+|++++
T Consensus 30 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~ 105 (385)
T PRK09276 30 GVDVISLGIGDPDLPTPDHIIEAMCKAVED----PENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEG 105 (385)
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHH
Confidence 457899999999988888999999988764 3446798888999999999999975 4556776 59999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..++++||.|++++|+|+.+...++..| .+++.++++.++++.++++. .+++++|+++
T Consensus 106 i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~ 173 (385)
T PRK09276 106 IAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAG------------GEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFIN 173 (385)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcC------------CEEEEEecCCCCCCcCCHHHHHHhccccceEEEEe
Confidence 998 56678999999999999999999999888 58899998766566555332 3578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
|||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..+++..+++|+++||||.||+||+|+||+++
T Consensus 174 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~ 253 (385)
T PRK09276 174 YPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVG 253 (385)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeC
Confidence 9999999999999999999999999999999999999887642 456666654456789999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ ++.+.........+++.+.|.++..++.+ ...+++++++.++++++.+.+.|++.|+++..+.+|+|
T Consensus 254 ~~~l--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 324 (385)
T PRK09276 254 NADL--------IAGLGKVKSNVDSGVFQAIQEAGIAALNG-PQEVVEELRKIYQERRDILVEGLRKLGLEVEPPKATFY 324 (385)
T ss_pred CHHH--------HHHHHHHHhhccCCCCHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceE
Confidence 9887 45666655544555677889988888864 35788999999999999999999998888877778899
Q ss_pred EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 381 VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+|++++ +.++.++..++++++||.+.||+.|+..+++++||+++.+++++.+++++|+++
T Consensus 325 ~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~ 385 (385)
T PRK09276 325 VWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKKL 385 (385)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhhC
Confidence 999997 446778888888878999999999976667899999988889999999999763
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-53 Score=413.00 Aligned_cols=344 Identities=28% Similarity=0.428 Sum_probs=291.1
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~al 148 (441)
+++|+|+.|+|++++++.+.+++.+.+. ....+|++..|..++|+++|+|+.+ +..++++ +|++|+|+++++
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al 94 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLE-----QGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQAL 94 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHH
Confidence 3689999999998888888888888765 3356798889999999999999976 5556775 899999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||.|++++|+|+.+...++..| .+++.++.+.++++..+++. .++++++++++
T Consensus 95 ~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~ 162 (378)
T PRK07682 95 DVAMRAIINPGDEVLIVEPSFVSYAPLVTLAG------------GVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCS 162 (378)
T ss_pred HHHHHHhCCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEEC
Confidence 98 56788999999999999999999998888 47788887654444444322 25789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
||||||.++|.+++++|+++|++|+++||+||+|.++.+++.+.++..+++..+++++++||||.||+||+|+||+++++
T Consensus 163 p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~ 242 (378)
T PRK07682 163 PNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPV 242 (378)
T ss_pred CCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCH
Confidence 99999999999999999999999999999999999998876444555555445789999999999999999999999998
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVW 382 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 382 (441)
++ ++.+.........+++.+.|.++.+++++ +..+++++++.++++++.+.+.|+++|+.+..|++++|+|
T Consensus 243 ~~--------i~~l~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~g~~~~~ 313 (378)
T PRK07682 243 YF--------SEAMLKIHQYSMMCAPTMAQFAALEALRA-GNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPGGAFYAF 313 (378)
T ss_pred HH--------HHHHHHHHHhhccCCCHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHCCCccCCCCeeEEEE
Confidence 87 46666555555566889999999999974 3456889999999999999999999998888888999999
Q ss_pred EEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 383 VQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 383 ~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+.++ +.++.++..++++++||.+.||..|+..+++++||+++.+.+++++++++|++++
T Consensus 314 ~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l 374 (378)
T PRK07682 314 PSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFV 374 (378)
T ss_pred EeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9985 3467788888887779999999999866689999999888899999999999864
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=412.68 Aligned_cols=342 Identities=24% Similarity=0.417 Sum_probs=285.2
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCC-CCCC-cEEEcCCcH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMG-IEGD-EIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~-~~~~-~I~~t~G~~ 145 (441)
.++++++|+.|+|++++|+.+.+++.+.+. ...+|++..|..+||++||+|+.+ ++. ++++ +|++|+|++
T Consensus 27 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~ 100 (396)
T PRK09147 27 ADLPPISLSIGEPKHPTPAFIKDALAANLD------GLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSR 100 (396)
T ss_pred cCCCeEecCCCCCCCCCCHHHHHHHHHHhh------hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChH
Confidence 467899999999999888999999888653 345798889999999999999975 455 7775 999999999
Q ss_pred HHHHH-HHHhcCC---CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCcc
Q 013521 146 SDISR-LQMLLGS---NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTD 216 (441)
Q Consensus 146 ~al~~-l~~l~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~ 216 (441)
+++.+ +..++++ ||.|++++|+|+.+...+...| .+++.+|++++++|.++++. .++++
T Consensus 101 ~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k 168 (396)
T PRK09147 101 EALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAG------------AEPYFLNCDPANNFAPDFDAVPAEVWARTQ 168 (396)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcC------------CEEEEeccCccccCccCHHHHHHHHhhccE
Confidence 99997 5777899 8999999999999999999998 58999999876666665432 25789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCcccc----cC-CCcceeEEEecCCcccC
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYE----IP-GAREVAIEISSFSKFAG 289 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~--~~~~~~----~~-~~~~~~i~i~S~SK~~~ 289 (441)
++++||||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.+... .. +..+++|+++||||.++
T Consensus 169 ~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~ 248 (396)
T PRK09147 169 LLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSN 248 (396)
T ss_pred EEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccC
Confidence 999999999999999999999999999999999999999999887652 222111 11 12478999999999999
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
+||+|+||+++|+++ ++.+.........+++.+.|.++.+.+.+ ..++++.++.++++++.+.+.|.+.
T Consensus 249 ~~GlRiG~~~~~~~l--------~~~~~~~~~~~~~~~~~~~q~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~- 317 (396)
T PRK09147 249 VPGLRSGFVAGDAAL--------LKKFLLYRTYHGCAMPPAVQAASIAAWND--EAHVRENRALYREKFDAVTPILAPV- 317 (396)
T ss_pred CccceeeeecCCHHH--------HHHHHHHhhhcccCCCHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999999999887 45666555544456788899988888853 3578899999999999999999875
Q ss_pred CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC------CCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 370 LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP------GGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+.+..|++|+|+|++++ .++.+++..+++++||.+.||+.|+. .+.+++||+++.+++++++++++|++++
T Consensus 318 ~~~~~p~~g~f~~~~~~-~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 318 LDVQLPDAGFYLWAKVP-GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFC 394 (396)
T ss_pred cCCCCCCeeEEEEEECC-CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 66666789999999998 45678888888778999999999862 2368999999888999999999999864
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-53 Score=416.72 Aligned_cols=352 Identities=22% Similarity=0.308 Sum_probs=281.5
Q ss_pred CCCeEEeCCCCC---CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcH
Q 013521 71 DARLIRLGIGDT---TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~---~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~ 145 (441)
+.+++++++|+| ++++|+.+.+++.+.+.. ....+|++..|..+||+++|+|+.+ ++.+++++|++|+|++
T Consensus 31 g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~----~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~ 106 (433)
T PRK06855 31 GVKITWENIGDPIAKGEKIPDWMKEIVAELVMD----DKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLG 106 (433)
T ss_pred cccccccccCCCcccCCCCCHHHHHHHHHHhhc----CCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHH
Confidence 457899999999 678999999999987754 4567899999999999999999976 5678899999999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCchhhHhHHH-HhccccccccccCccceeEEeecCCCCCccCCCCC-------CCCccE
Q 013521 146 SDISRLQMLLGSNVTVAVQDPSFPAYIDTSV-IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-------TSRTDI 217 (441)
Q Consensus 146 ~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-------~~~~~~ 217 (441)
+++.++..++++||.|++++|+|+++..... ..| .+++.+++++++++.++++. .+++++
T Consensus 107 ~al~~~~~l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g------------~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~ 174 (433)
T PRK06855 107 DAIAKIYGLLRREARVIGPSPAYSTHSSAEAAHAG------------YPPVTYRLDPENNWYPDLDDLENKVKYNPSIAG 174 (433)
T ss_pred HHHHHHHHhcCCCCeEEEeCCCCchHHHHHHHhcC------------CeEEEEecccccCCCCCHHHHHHHHhcCCCceE
Confidence 9999865688999999999999999764422 335 47788888765566555432 146789
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
+++||||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++.++.. ..++|+++||||.+++||+|+|
T Consensus 175 i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG 253 (433)
T PRK06855 175 ILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIG-DVPGIALKGISKELPWPGSRCG 253 (433)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcC-cCCeEEEecCccccCCCcceEE
Confidence 99999999999999999999999999999999999999999988653 456666632 2367999999999999999999
Q ss_pred EEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSL-GLKVNG 374 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 374 (441)
|+++|+...........+.+..... ...+++.+.|.++.+++.+..+ ++++++++.|+++++.+.+.|+++ ++.+.+
T Consensus 254 ~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~ 332 (433)
T PRK06855 254 WIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNR 332 (433)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccC
Confidence 9998532100000001222222222 2334788999999999986543 789999999999999999999887 778788
Q ss_pred CCCceEEEEEcCCC----------------------------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-
Q 013521 375 GKNAPYVWVQFPGS----------------------------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG- 425 (441)
Q Consensus 375 ~~~~~~~~~~~~~~----------------------------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~- 425 (441)
|.+|+|+|++++.. ++.+++..+++++||.+.||+.|+.. .+++||+++.
T Consensus 333 p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~-~~~~Rls~~~~ 411 (433)
T PRK06855 333 TNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTE-LNGFRVTLLER 411 (433)
T ss_pred CCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCC-CCceEEEECCC
Confidence 88999999999742 35677778888899999999999753 3569999975
Q ss_pred CHHHHHHHHHHHHhhC
Q 013521 426 HREYISEACRRLKNFL 441 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~l 441 (441)
+.+++++++++|++++
T Consensus 412 ~~~~i~~~~~~l~~~~ 427 (433)
T PRK06855 412 DEEKFEWIYQTLAEKI 427 (433)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 8899999999998864
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=405.42 Aligned_cols=353 Identities=21% Similarity=0.349 Sum_probs=284.5
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--h
Q 013521 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--D 130 (441)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~ 130 (441)
+.+..+.+.... ..+.++.++++|+.|+|++++|+.+.+++.+... ....|+++.|..+||+++|+|+.+ +
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~------~~~~Y~~~~G~~~lr~aia~~l~~~~g 78 (374)
T PRK05839 6 YPFEKLRELLKE-ITPNKEYKGLDLTIGEPQFETPKFIQDALKNNAH------LLNKYPKSAGEESLREAQRGFFKRRFK 78 (374)
T ss_pred chHHHHHHHHHH-hhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHhh------ccCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 445555444432 2222356899999999999888888888877542 345798889999999999999976 5
Q ss_pred CCCCCCcEEEcCCcHHHHHHH-HHhc--CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccC
Q 013521 131 MGIEGDEIFISDGAQSDISRL-QMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFP 207 (441)
Q Consensus 131 ~~~~~~~I~~t~G~~~al~~l-~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 207 (441)
.++++++|++|+|+++++..+ ..++ ++||.|++++|+|+.+...+...| .+++.++.+.++++.+
T Consensus 79 ~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g------------~~v~~v~~~~~~~~~~ 146 (374)
T PRK05839 79 IELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASR------------AKVLLMPLTKENDFTP 146 (374)
T ss_pred CCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcC------------CEEEEeecccccCCcC
Confidence 568999999999999999875 4443 579999999999999999999888 5999999987667777
Q ss_pred CCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc-----CCCcceeEE
Q 013521 208 DLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI-----PGAREVAIE 280 (441)
Q Consensus 208 ~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~-----~~~~~~~i~ 280 (441)
++.. ..+++++++||||||||.++|.+++++|+++|++||++||+||+|.++.++....++... ....+++|+
T Consensus 147 d~~~~~~~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~ 226 (374)
T PRK05839 147 SLNEKELQEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLV 226 (374)
T ss_pred CcchhhhccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEE
Confidence 6532 357999999999999999999999999999999999999999999998654433343322 112368999
Q ss_pred EecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 013521 281 ISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKI 360 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (441)
++||||.|++||+|+||+++++++ ++.+.........+++.+.|.++.+++.+ ..++++.++.++++++.
T Consensus 227 ~~SfSK~~~~~GlRiG~ii~~~~~--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~ 296 (374)
T PRK05839 227 INSISKRSSAPGLRSGFIAGDASI--------LKKYKAYRTYLGCASPLPLQKAAAVAWLD--DEHAEFFRNIYAKNLKL 296 (374)
T ss_pred EeccccccCCccceeEEEecCHHH--------HHHHHHHHhhcCCCCChHHHHHHHHHhcc--chHHHHHHHHHHHHHHH
Confidence 999999999999999999998877 45666555544456788889988877764 35678889999999999
Q ss_pred HHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCC--CCCeEEEEeecCHHHHHHHHHHHH
Q 013521 361 IVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG--GNEHIRVSAFGHREYISEACRRLK 438 (441)
Q Consensus 361 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~iRls~~~~~~~~~~~l~~l~ 438 (441)
+.+.| ++. .|++|+|+|++++ ++.++..++++++||.+.||+.|+.. +++++||+++.+++++.+++++|+
T Consensus 297 ~~~~l---~~~--~p~gg~fi~~~~~--~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~ 369 (374)
T PRK05839 297 AREIL---GIT--IPPATFYVWLPVD--NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIK 369 (374)
T ss_pred HHHhc---CCC--CCCeeEEEEEeCC--ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 88876 343 4679999999997 45788888887789999999988643 468999999778999999999999
Q ss_pred hhC
Q 013521 439 NFL 441 (441)
Q Consensus 439 ~~l 441 (441)
+++
T Consensus 370 ~~l 372 (374)
T PRK05839 370 TYL 372 (374)
T ss_pred HHh
Confidence 864
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=409.85 Aligned_cols=345 Identities=27% Similarity=0.471 Sum_probs=289.5
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~a 147 (441)
+.++++|+.|.|+.++|+.+++++.+.+.. ....+|++..|.++||+++|+|+.+ +..++++ +|++|+|++++
T Consensus 34 g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~a 109 (394)
T PRK05942 34 GLDLIDLGMGNPDGAAPQPVIEAAIAALAD----PQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEG 109 (394)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhC----CCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHH
Confidence 457999999998877777788887776643 3456898889999999999999975 4557787 59999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..++++||+|++++|+|+.+...+...| .+++.++++.++++..+++. .+++++++++
T Consensus 110 l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~ 177 (394)
T PRK05942 110 LTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAG------------AQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFN 177 (394)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcC------------CEEEEeecCCccCCccCHHHHHHhccccceEEEEc
Confidence 998 56778999999999999999988888888 58999998766565554332 3689999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
|||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..+++..+++|+++||||.||+||+|+||+++
T Consensus 178 ~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~ 257 (394)
T PRK05942 178 YPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVG 257 (394)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeec
Confidence 9999999999999999999999999999999999999887643 445655654456789999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ ++.+.........+++.++|.++.+++.. ..+++++.++.++++++.+.+.|++.|+.+..+.+|+|
T Consensus 258 ~~~l--------~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~f 328 (394)
T PRK05942 258 NRHI--------IQGLRTLKTNLDYGIFSALQKAAETALQL-PDSYLQQVQERYRTRRDFLIQGLGELGWNIPPTKATMY 328 (394)
T ss_pred CHHH--------HHHHHHHHhhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeeE
Confidence 8877 46666665544556788899999888863 34678899999999999999999988888877778889
Q ss_pred EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 381 VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+|++++ ..++.++..++++++||.+.||+.|+..+.++|||++..+.+.+.+++++|+++
T Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 329 LWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA 389 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 999997 346677888888888999999999976667899999987889999999999864
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=409.27 Aligned_cols=353 Identities=18% Similarity=0.296 Sum_probs=284.9
Q ss_pred hcCCCCCeEEeCCCCCC----CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEE
Q 013521 67 RKHPDARLIRLGIGDTT----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFI 140 (441)
Q Consensus 67 ~~~~~~~~i~l~~g~~~----~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~ 140 (441)
....++++|+|++|+|+ +++|+.+.+++.+++.. ....+|++..|..+||+++|+|+.+ ++++++++|++
T Consensus 27 ~~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~i 102 (409)
T PLN00143 27 NEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRS----AKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYL 102 (409)
T ss_pred ccCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhC----cCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEE
Confidence 34456789999999998 89999999999998864 4456799999999999999999975 56789999999
Q ss_pred cCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCC
Q 013521 141 SDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSR 214 (441)
Q Consensus 141 t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~ 214 (441)
|+|+++++.+ +..++++||.|++++|+|+.+...+...| .+++.+++++++++..+++. ..+
T Consensus 103 t~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 170 (409)
T PLN00143 103 TLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHH------------LEIRHFDLLPEKGWEVDLDAVEAIADEN 170 (409)
T ss_pred ecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcC------------CEEEEEeccCCCCCcCCHHHHHHhcccC
Confidence 9999999998 57778999999999999999999999888 58888888655566555432 257
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC-CcccccCCCcceeEEEecCCcccCCccc
Q 013521 215 TDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 215 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
+++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++.+ .++..++ ..+++|+++||||.|++||+
T Consensus 171 ~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~-~~~~vi~~~SfSK~f~~pGl 249 (409)
T PLN00143 171 TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFA-SIVPVITLGSISKRWMIPGW 249 (409)
T ss_pred CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhc-ccCcEEEEccchhhcCCCcc
Confidence 889999999999999999999999999999999999999999999886532 3444443 23579999999999999999
Q ss_pred eeEEEEee-c-cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-C
Q 013521 294 RLGWTVVP-E-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-L 370 (441)
Q Consensus 294 r~G~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 370 (441)
|+||++++ + .++. .....+.+...... ...++.++|.++.+++.+....++++.++.++++++.+.+.|++++ .
T Consensus 250 RvG~~v~~~p~~~~~--~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 326 (409)
T PLN00143 250 GLGWLVTCDPSGLLQ--ICEIADSIKKALNP-APFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCI 326 (409)
T ss_pred ceEEEEeeCchhhhh--hHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999994 2 2310 00112233333222 2235778999999999754456788999999999999999998874 3
Q ss_pred ee-eCCCCceEEEEEcCC------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 371 KV-NGGKNAPYVWVQFPG------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 371 ~~-~~~~~~~~~~~~~~~------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.. ..|.+|+|+|++++. .++.+++..+++++||.+.||+.|+ .++++||+++.+++++++++++|++++
T Consensus 327 ~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~--~~~~iRi~~~~~~~~l~~al~rl~~~l 402 (409)
T PLN00143 327 MCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVG--LKNWLRITFAVEQSSLEDGLGRLKSFC 402 (409)
T ss_pred CCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccC--CCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 32 356789999999973 1466777888888899999999995 368999999888999999999998763
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-52 Score=412.56 Aligned_cols=351 Identities=20% Similarity=0.307 Sum_probs=284.7
Q ss_pred cCCCCCeEEeCCCCCC----CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEc
Q 013521 68 KHPDARLIRLGIGDTT----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFIS 141 (441)
Q Consensus 68 ~~~~~~~i~l~~g~~~----~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t 141 (441)
+.+++++|+|+.|+|+ +.+|+.+.+++.+.++. ....+|++..|..++|+++|+|+.+ +.++++++|++|
T Consensus 62 ~~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it 137 (462)
T PLN02187 62 KDVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRS----GKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLT 137 (462)
T ss_pred cCCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEe
Confidence 3446789999999987 55678889999988764 3346798999999999999999975 567899999999
Q ss_pred CCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCc
Q 013521 142 DGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRT 215 (441)
Q Consensus 142 ~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~ 215 (441)
+|+++++.+ +..+++|||.|++++|+|+.|...+...| .+++.+++.+++++..|++. .+++
T Consensus 138 ~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g------------~~~~~~~l~~~~~~~~d~~~l~~~~~~~~ 205 (462)
T PLN02187 138 AGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSG------------LEVRKFDLLPEKEWEIDLEGIEAIADENT 205 (462)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcC------------CEEEEEeCccccCCccCHHHHHHhcCCCc
Confidence 999999998 57778999999999999999998888888 58888888655556555432 3578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccce
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
+++++||||||||.+++.+++++|+++|++||++||+||+|.++.+++. +.++..++. ..++|+++||||.|++||+|
T Consensus 206 ~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~-~~~vi~l~SfSK~f~~pGlR 284 (462)
T PLN02187 206 VAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFAS-IVPVLTLAGISKGWVVPGWK 284 (462)
T ss_pred EEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhcc-CCcEEEEecchhhcCCccce
Confidence 8999999999999999999999999999999999999999999888653 345655543 24699999999999999999
Q ss_pred eEEEEeecc-ccccCCchhHHHHHHHHhhhcC--CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-C
Q 013521 295 LGWTVVPEE-LRYSNGYPVIKDFNRIVCTCFN--GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-L 370 (441)
Q Consensus 295 ~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 370 (441)
+||++++++ .+ ....+.+...+..... +++.+.|.++.+++++....+++++++.++++++.+.+.|++++ +
T Consensus 285 iG~~v~~~p~~~----~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~ 360 (462)
T PLN02187 285 IGWIALNDPEGV----FETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCV 360 (462)
T ss_pred eEEEEecCchhH----HHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999998532 11 0002344444443322 35789999999999754457899999999999999999999874 3
Q ss_pred e-eeCCCCceEEEEEcCC-----C-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 371 K-VNGGKNAPYVWVQFPG-----S-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 371 ~-~~~~~~~~~~~~~~~~-----~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
. +..|++|+|+|++++. . ++.+++.++++++||.+.||+.|+ .++||||+++.+++.+++++++|.+++
T Consensus 361 ~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg--~~~~iRis~~~~~e~l~~al~rL~~~l 436 (462)
T PLN02187 361 VCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALG--LKNWMRITIGVEAHMLEDALERLKGFC 436 (462)
T ss_pred cCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccC--CCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 3 2356788999998852 1 356788888888899999999996 468999999888999999999998763
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-52 Score=406.40 Aligned_cols=342 Identities=24% Similarity=0.443 Sum_probs=283.4
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCC--CCCC-cEEEcCCc
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMG--IEGD-EIFISDGA 144 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~--~~~~-~I~~t~G~ 144 (441)
.+.++++|+.|+|++++|+.+.+++.+.+. ...+|++..|..+||+++|+|+.+ +++ ++++ +|++|+|+
T Consensus 26 ~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga 99 (393)
T TIGR03538 26 ASKPPIALSIGEPKHPTPAFVLEALRENLH------GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGT 99 (393)
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHHHHhh------ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCc
Confidence 356899999999999889999999988653 345798899999999999999976 333 6775 89999999
Q ss_pred HHHHHH-HHHhcCCCCE--EEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCcc
Q 013521 145 QSDISR-LQMLLGSNVT--VAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTD 216 (441)
Q Consensus 145 ~~al~~-l~~l~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~ 216 (441)
++++.+ +..+++|||. |++++|+|+.+...+...| .+++.+++++++++.++.+. ..++|
T Consensus 100 ~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 167 (393)
T TIGR03538 100 REALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAG------------AEPYFLNCTAENGFLPDFDAVPESVWRRCQ 167 (393)
T ss_pred HHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcC------------CeEEEeeccccCCCCCCHHHHHHHHhhcce
Confidence 999998 5677899986 9999999999999998888 58999999776667666432 25789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCccc-c---cC-CCcceeEEEecCCcccC
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIY-E---IP-GAREVAIEISSFSKFAG 289 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~-~---~~-~~~~~~i~i~S~SK~~~ 289 (441)
+++++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++ .+.+.. . .. ...+++|+++||||.|+
T Consensus 168 ~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 247 (393)
T TIGR03538 168 LLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSN 247 (393)
T ss_pred EEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcC
Confidence 99999999999999999999999999999999999999999988763 222221 1 11 12468999999999999
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
+||+|+||+++++++ ++.+.........+++.+.|.++.+.+.+ .+++++.++.++++++.+.+.|+++
T Consensus 248 ~~GlRvG~~i~~~~l--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~- 316 (393)
T TIGR03538 248 LPGLRSGFVAGDAEI--------LKAFLRYRTYHGCAMPIPTQLASIAAWND--EQHVRENRALYREKFAAVLEILGQV- 316 (393)
T ss_pred CcccceEEEecCHHH--------HHHHHHHHHhhccCcCHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 999999999999887 45666655544456788999988888853 3678899999999999999999876
Q ss_pred CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC------CCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 370 LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP------GGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+.+..+.+|+|+|++++ .++.++++.+++++||.+.||+.|+. .+.+++||+++.+++++++++++|++++
T Consensus 317 ~~~~~p~gg~f~~~~~~-~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l~~~~ 393 (393)
T TIGR03538 317 LDLELPDAGFYLWPKVP-GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERIRSFI 393 (393)
T ss_pred CcccCCCeeEEEEEECC-CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence 45556789999999998 45677888888878999999999852 2467999999888999999999999864
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-52 Score=377.38 Aligned_cols=363 Identities=23% Similarity=0.359 Sum_probs=314.8
Q ss_pred CchHHHHHHHHHHHhcCCC----CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHh
Q 013521 53 YLFPEISMRESEHIRKHPD----ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFY 128 (441)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~----~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~ 128 (441)
+.|.++.++......||.. ++++.|++.+++++.||.+.+|+++.+. .+..+|+ .+..++.++++.|.+
T Consensus 2 ~~F~~~~~r~~t~s~KWd~~~g~~DvlPmWVADMDf~~pp~i~~Al~~rvd-----hGvfGY~--~~~~~~~~ai~~w~~ 74 (388)
T COG1168 2 YDFDTVIERLGTNSLKWDAHPGNEDVLPMWVADMDFPTPPEIIEALRERVD-----HGVFGYP--YGSDELYAAIAHWFK 74 (388)
T ss_pred CchhhhhhhcCCCceeccccCCCCCcceeeeecccCCCCHHHHHHHHHHHh-----cCCCCCC--CCCHHHHHHHHHHHH
Confidence 4566677776666667743 5799999999999999999999999997 6778894 688899999999997
Q ss_pred h--hCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC-CCC
Q 013521 129 K--DMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP-ENN 204 (441)
Q Consensus 129 ~--~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~-~~~ 204 (441)
+ ++.++++-|++++|...++.+ +..+.+|||.|++.+|.|+++......-|+ ++...|+.. ++.
T Consensus 75 ~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R------------~~i~~pL~~~~~~ 142 (388)
T COG1168 75 QRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGR------------KVIENPLVEDDGR 142 (388)
T ss_pred HhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhcCc------------EEEeccccccCCc
Confidence 6 677889999999999999998 788999999999999999999999999985 788888874 445
Q ss_pred ccCCCCC------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCC-Ccc
Q 013521 205 FFPDLST------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPG-ARE 276 (441)
Q Consensus 205 ~~~~~~~------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~-~~~ 276 (441)
+..|++. ..++|+.++||||||||.+++.+++.+|.++|.+||+.||+||+|+++.+.+ .+.+..++.. ..+
T Consensus 143 y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~ 222 (388)
T COG1168 143 YEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFAD 222 (388)
T ss_pred EEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhc
Confidence 5556433 3568999999999999999999999999999999999999999999999887 4555555432 347
Q ss_pred eeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013521 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE 356 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 356 (441)
+.|.+.|.||+|+++|+++++++.+++.++ .+.+.++......++|.++..|..++++ .+..|++.+++.++.
T Consensus 223 ~~it~~saSKtFNlaGL~~a~~Ii~n~~lr------~~~~~~l~~~~~~~~n~lg~~A~~aAY~-~G~~WLd~L~~yl~~ 295 (388)
T COG1168 223 NSITLTSASKTFNLAGLKCAYIIISNRELR------AKFLKRLKRNGLHGPSALGIIATEAAYN-QGEPWLDELLEYLKD 295 (388)
T ss_pred ceEEEeeccccccchhhhheeEEecCHHHH------HHHHHHHHHhcCCCCchHHHHHHHHHHH-hchHHHHHHHHHHHH
Confidence 899999999999999999999999887752 1234455556677799999999999998 567899999999999
Q ss_pred HHHHHHHHHHhC--CCeeeCCCCceEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHH
Q 013521 357 NAKIIVDAFQSL--GLKVNGGKNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISE 432 (441)
Q Consensus 357 ~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~ 432 (441)
+++++.+.|++. ++++..|++++.+|+++. +.++.++.+.++++.+|.+.+|..||..+.+|+|++++++++.+++
T Consensus 296 N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~e 375 (388)
T COG1168 296 NRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEE 375 (388)
T ss_pred HHHHHHHHHHhhCCCcEEecCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHHHH
Confidence 999999999987 899999989999999997 5566789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 013521 433 ACRRLKNFL 441 (441)
Q Consensus 433 ~l~~l~~~l 441 (441)
++++|+.++
T Consensus 376 al~ri~~al 384 (388)
T COG1168 376 ALERLKRAL 384 (388)
T ss_pred HHHHHHHHH
Confidence 999998764
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-52 Score=407.87 Aligned_cols=349 Identities=19% Similarity=0.322 Sum_probs=286.6
Q ss_pred CCCeEEeCCCCCC----CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCc
Q 013521 71 DARLIRLGIGDTT----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGA 144 (441)
Q Consensus 71 ~~~~i~l~~g~~~----~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~ 144 (441)
+.++|+|++|+|+ +++|+.+.+++.+++.. .....|++..|..++|+++|+|+.+ +.++++++|++|+|+
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~ 126 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRS----GKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGC 126 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHc----CcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCH
Confidence 5689999999985 67788999999988864 3445798888999999999999975 566789999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEE
Q 013521 145 QSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDII 218 (441)
Q Consensus 145 ~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v 218 (441)
++++.+ +..++++||+|++++|+|+.|...+...| .+++.+++.++.+|..|++. .++++++
T Consensus 127 ~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i 194 (430)
T PLN00145 127 AQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSG------------LEVRHFDLLPERGWEVDLEGVEALADENTVAM 194 (430)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcC------------CEEEEeeCCcccCCcCCHHHHHHHhCcCceEE
Confidence 999998 56677999999999999999988888888 58888887666566666442 3678999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++. +.++..++. .+++|+++||||.|++||+|+||
T Consensus 195 ~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pG~RlG~ 273 (430)
T PLN00145 195 VIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGE-VAPVLTLGSISKRWVVPGWRLGW 273 (430)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcc-cCcEEEEeccccccCCCCeeEEE
Confidence 9999999999999999999999999999999999999999988653 455555543 46799999999999999999999
Q ss_pred EEee--ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCee-e
Q 013521 298 TVVP--EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKV-N 373 (441)
Q Consensus 298 l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~ 373 (441)
++++ +.++.. .++.+.+.... ....+++.+.|.++.+++.+....++++.++.++++++.+.+.|+++ |+.+ .
T Consensus 274 iv~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~ 350 (430)
T PLN00145 274 IATCDPNGILKE--TKVVDSIRNYL-NISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPH 350 (430)
T ss_pred EEEecchhhhhh--hHHHHHHHHHh-cccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 9984 333210 00112333332 23334678999999999985445788999999999999999999987 7765 3
Q ss_pred CCCCceEEEEEcCC------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 374 GGKNAPYVWVQFPG------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 374 ~~~~~~~~~~~~~~------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.|++++|+|++++. .++.+++.++++++||.+.||+.|+. ++|+||+++.+.+.+++++++|++++
T Consensus 351 ~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~lRis~~~~~~~l~~al~rl~~~~ 422 (430)
T PLN00145 351 KPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGM--KNWLRITFAIDPPSLEDGLERLKSFC 422 (430)
T ss_pred CCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 57899999999862 24667888999999999999999974 68999999888899999999998763
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=403.91 Aligned_cols=343 Identities=29% Similarity=0.473 Sum_probs=288.6
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++++|+.|.|++++++.+.+++.+.+. .....|++..|..+||+++|+|+.+ +.++++++|++|+|+++++
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al 103 (388)
T PRK07337 29 GRDIIHMGIGEPDFTAPEPVVEAAARALR-----RGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAAL 103 (388)
T ss_pred CCCEEEeCCcCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHH
Confidence 45799999999998888889999988775 3346798888999999999999975 5567899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||+|++++|+|+++...+...| .+++.++++.++++..+.+. .+++++|++++
T Consensus 104 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~ 171 (388)
T PRK07337 104 LLACLALVERGDEVLMPDPSYPCNRHFVAAAE------------GRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLAS 171 (388)
T ss_pred HHHHHHhcCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEeecCCccCCcCCHHHHHhhcCccceEEEEEC
Confidence 97 56778999999999999999998888888 58888998765555555332 36789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
||||||.++|.+++++|+++|++|+++||+||+|.++.+++.+.+...+ ++++++++||||.+|+||+|+||+++++
T Consensus 172 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~---~~~vi~~~S~SK~~~~~G~RiG~~~~~~ 248 (388)
T PRK07337 172 PSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSL---GDDVITINSFSKYFNMTGWRLGWLVVPE 248 (388)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhc---cCCEEEEEechhhcCCchhheeeeecCH
Confidence 9999999999999999999999999999999999998876544444333 3678999999999999999999999998
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee-eCCCCceEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV-NGGKNAPYV 381 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~ 381 (441)
++ .+.+.........+++.+.|.++.+++.+....++++.++.++++++.+.+.|+++|+.+ ..|.+|+|+
T Consensus 249 ~l--------~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f~ 320 (388)
T PRK07337 249 AL--------VGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYV 320 (388)
T ss_pred HH--------HHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEEE
Confidence 77 466666665555567899999999998755556678889999999999999999887764 356789999
Q ss_pred EEEcCC------CChHHHHHHHHHhcCeEEeCCCCcCC-CCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 382 WVQFPG------SSSWDVFAEILEKTHILTIPGSGFGP-GGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 382 ~~~~~~------~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|++++. .++.+++.++++++||.+.||+.|+. .+++++||+++.+++++++++++|.+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 321 YADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387 (388)
T ss_pred EEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 999973 35677888888888999999999974 3468999999888999999999999864
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=402.44 Aligned_cols=341 Identities=21% Similarity=0.313 Sum_probs=285.1
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC--CC-CcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI--EG-DEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~--~~-~~I~~t~G~~~al 148 (441)
.++++|+.|+|++++++.+.+++.+.+.. ...+|++..|..+||+++++++.+.+|+ ++ ++|++|+|+++++
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al 103 (384)
T PRK12414 29 HDALNLSQGAPNFAPDPALVEGVARAMRD-----GHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGL 103 (384)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHHh-----CCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHH
Confidence 46899999999988899999999887753 3457999999999999999999764444 44 6899999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||+|++++|+|+.+...++..| .+++.++++++ ++..+++. .+++++++++|
T Consensus 104 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~i~~ 170 (384)
T PRK12414 104 YAAISALVHPGDEVIYFEPSFDSYAPIVRLQG------------ATPVAIKLSPE-DFRVNWDEVAAAITPRTRMIIVNT 170 (384)
T ss_pred HHHHHHhcCCCCEEEEeCCCccchHHHHHHcC------------CEEEEEecCcc-ccccCHHHHHhhcCcccEEEEEcC
Confidence 87 67788999999999999999999988888 58888888753 34444322 25789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..+++..+++|+++||||.||+||+|+||++++
T Consensus 171 p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~ 250 (384)
T PRK12414 171 PHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAP 250 (384)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecC
Confidence 999999999999999999999999999999999999888653 3355555444578999999999999999999999999
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEE
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 381 (441)
+++ ++.+.........+++.+.|.++.+++.+... ..+.++.|+++++.+.+.|+++|+.+.++.+|+|+
T Consensus 251 ~~l--------~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~--~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~gg~~~ 320 (384)
T PRK12414 251 AEL--------MDEIRKVHQFMVFSADTPMQHAFAEALAEPAS--YLGLGAFYQRKRDLLARELAGSRFELLPSEGSFFM 320 (384)
T ss_pred HHH--------HHHHHHHHhheecCCCcHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHHHHHhCCCeecCCCcceEE
Confidence 887 46666666555666889999999999975432 34678899999999999999999888888899999
Q ss_pred EEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCCCC--CCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 382 WVQFPG---SSSWDVFAEILEKTHILTIPGSGFGPGG--NEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 382 ~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~--~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
|++++. ..+.+++.++++++||.+.||+.|+..+ .++|||+++.+++++++++++|.++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~~ 384 (384)
T PRK12414 321 LARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCSL 384 (384)
T ss_pred EEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhhC
Confidence 999863 3567788788888899999999996432 6899999988899999999999863
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=402.49 Aligned_cols=343 Identities=26% Similarity=0.410 Sum_probs=290.9
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~al 148 (441)
+++++|+.|.|++++++.+.+++.+.+. ....+|++..|..+||+++|+|+.+ +++++++ +|++|+|+++++
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~-----~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al 102 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAIT-----ENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAI 102 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHH
Confidence 4689999999988878888999999876 3346798889999999999999974 5667888 999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~~ 222 (441)
.+ +..++++||.|++++|+|+.+...+...| .+++.++.+.+ ++..+.+ . .++++++++++
T Consensus 103 ~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~i~i~~ 169 (387)
T PRK07683 103 DIAFRTILEPGTEVILPAPIYPGYEPIIRLCG------------AKPVFIDTRST-GFRLTAEALENAITEKTRCVVLPY 169 (387)
T ss_pred HHHHHHhCCCCCEEEEcCCCccchHHHHHHcC------------CEEEEeecCcc-cCCCCHHHHHHhcCcCceEEEEeC
Confidence 98 56678999999999999999999999888 58888888753 5544422 1 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
||||||.++|.+++++|+++|+++|++||+||+|.++.+++.+.++..+.+.++++|+++||||.+|+||+|+||+++++
T Consensus 170 p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~ 249 (387)
T PRK07683 170 PSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPS 249 (387)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCH
Confidence 99999999999999999999999999999999999988765555666664456789999999999999999999999998
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVW 382 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 382 (441)
++ ++.+.........+++.+.|.++.+++.+ +..++++.++.++++++.+.+.|++.++.+.++.+++|+|
T Consensus 250 ~l--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 320 (387)
T PRK07683 250 YL--------AKHILKVHQYNVTCASSISQYAALEALTA-GKDDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGAFYLF 320 (387)
T ss_pred HH--------HHHHHHHHHhccCCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCeeEEEE
Confidence 87 45565554444455678899999888874 3467888999999999999999998888888888899999
Q ss_pred EEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 383 VQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 383 ~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+.++. .++.+++.++++++||.+.||+.|+..+++++||+++.+++++++++++|.+++
T Consensus 321 ~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l 381 (387)
T PRK07683 321 PSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFL 381 (387)
T ss_pred EecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 99873 456778888888889999999999876689999999888999999999998763
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=412.62 Aligned_cols=349 Identities=23% Similarity=0.362 Sum_probs=280.2
Q ss_pred CCCCeEEeCCCCCC----------------CCC-------------cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHH
Q 013521 70 PDARLIRLGIGDTT----------------QPI-------------PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALR 120 (441)
Q Consensus 70 ~~~~~i~l~~g~~~----------------~~~-------------~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr 120 (441)
++.++|+|++|+|+ +.. |..+++++.+.+.... .....|++..|..+||
T Consensus 44 ~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~P~~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~LR 121 (481)
T PTZ00377 44 PFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIG--GGTGAYTDSAGYPFVR 121 (481)
T ss_pred CcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCccccccCCHHHHHHHHHHHHhCC--CcccCcCcccCCHHHH
Confidence 45789999999995 655 4477777776665432 2456799999999999
Q ss_pred HHHHHHHhh--hCCCCCCcEEEcCCcHHHHHH-HHHhc-CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEE
Q 013521 121 TAIADKFYK--DMGIEGDEIFISDGAQSDISR-LQMLL-GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVY 196 (441)
Q Consensus 121 ~~ia~~l~~--~~~~~~~~I~~t~G~~~al~~-l~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~ 196 (441)
++||+|+.+ ++.+++++|++|+|+++++.+ +..++ ++||.|++++|+|+.|...++..| .+++.
T Consensus 122 ~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g------------~~~v~ 189 (481)
T PTZ00377 122 KAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLG------------GKQVP 189 (481)
T ss_pred HHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcC------------CEEEE
Confidence 999999975 667889999999999999998 56677 799999999999999999999999 58899
Q ss_pred eecCCCCCccCCCCC-----C------CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--
Q 013521 197 MNCRPENNFFPDLST-----T------SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-- 263 (441)
Q Consensus 197 v~~~~~~~~~~~~~~-----~------~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-- 263 (441)
++++++++|.++++. . .++|+++++|||||||.++|.+++++|+++|++||++||+||+|.++.+++
T Consensus 190 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~ 269 (481)
T PTZ00377 190 YYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEK 269 (481)
T ss_pred EEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCC
Confidence 999876677665432 1 278999999999999999999999999999999999999999999988843
Q ss_pred CCCcccc----cCCC---cceeEEEecCCcc-cCCccceeEEEEe---eccccccCCchhHHHHHHHHhhhcCCCcHHHH
Q 013521 264 SPRSIYE----IPGA---REVAIEISSFSKF-AGFTGVRLGWTVV---PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQ 332 (441)
Q Consensus 264 ~~~~~~~----~~~~---~~~~i~i~S~SK~-~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (441)
.+.++.. ++.. +.++|+++||||. +++||+|+||+++ |+++ ++.+..... ...+++.++|
T Consensus 270 ~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~l--------i~~l~~~~~-~~~~~~~~~Q 340 (481)
T PTZ00377 270 PFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEV--------REQIYKLAS-INLCSNVVGQ 340 (481)
T ss_pred CcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHH--------HHHHHHHhh-eecCCChHHH
Confidence 2334432 2211 2378999999997 5889999999997 6666 466666554 3345889999
Q ss_pred HHHHHhcCCC----c----H-HHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcC--CC-----------C
Q 013521 333 AGGLACLSPD----G----F-QALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFP--GS-----------S 389 (441)
Q Consensus 333 ~a~~~~l~~~----~----~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~-----------~ 389 (441)
.++.+++++. + + .++++.++.|+++++.+.+.|+++ |+.+..|++|+|+|++++ .. .
T Consensus 341 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~ 420 (481)
T PTZ00377 341 LMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAP 420 (481)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCc
Confidence 9999998631 1 1 344555567899999999999988 899988889999998764 11 2
Q ss_pred hHHHHHHHHHhcCeEEeCCCCcCCC-CCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 390 SWDVFAEILEKTHILTIPGSGFGPG-GNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 390 ~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+.+++..+++++||.+.||+.|+.. +.+++||+++.+++++++++++|++++
T Consensus 421 ~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~~ 473 (481)
T PTZ00377 421 DVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFH 473 (481)
T ss_pred HHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Confidence 3456778888889999999999753 467999999877889999999998763
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=412.86 Aligned_cols=348 Identities=21% Similarity=0.320 Sum_probs=278.4
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhcc-------CCCCCCCCCCCcCcHHHHHHHHHHHhh--h--CCCCCCcEEE
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALS-------TVKGYKGYGAEQGNMALRTAIADKFYK--D--MGIEGDEIFI 140 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~-------~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~--~~~~~~~I~~ 140 (441)
.++|+|+.+++.++. +.+.+.+........ .......|++..|.++||++||+|+.+ + ..+++++|++
T Consensus 38 ~g~i~L~~~En~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iii 116 (468)
T PLN02450 38 SGIIQMGLAENQLSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVL 116 (468)
T ss_pred CeeEEeehhHhHhhH-HHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEE
Confidence 468999999987654 555555544322100 012345688888999999999999975 3 3378999999
Q ss_pred cCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH-HhccccccccccCccceeEEeecCCCCCccCCCCC-------
Q 013521 141 SDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV-IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------- 211 (441)
Q Consensus 141 t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------- 211 (441)
|+|+++++.+ +..+++|||.|++++|+|+++...+. ..| .+++.++++.++++.++.+.
T Consensus 117 t~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g------------~~~v~v~~~~~~~~~~~~~~le~~~~~ 184 (468)
T PLN02450 117 TAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTG------------VEIVPIHCSSSNGFQITESALEEAYQQ 184 (468)
T ss_pred ccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCC------------cEEEEEecCCccCCcCCHHHHHHHHHH
Confidence 9999999998 57778999999999999999988777 467 58899998766677654321
Q ss_pred ----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccC--------CCccee
Q 013521 212 ----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIP--------GAREVA 278 (441)
Q Consensus 212 ----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~--------~~~~~~ 278 (441)
..++++|++||||||||.++|.+++++|+++|++||++||+||+|+++.+++. +.++.... +..+++
T Consensus 185 ~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~v 264 (468)
T PLN02450 185 AQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRV 264 (468)
T ss_pred HHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcE
Confidence 13789999999999999999999999999999999999999999999877642 33443321 135789
Q ss_pred EEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHHH
Q 013521 279 IEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYKE 356 (441)
Q Consensus 279 i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~ 356 (441)
++++||||.||+||+|+||++++++.+ .+.+.... ....++.++|.++.++|++..+ .++++.++.+++
T Consensus 265 i~l~S~SK~~~l~GlRiG~li~~~~~l-------~~~~~~~~--~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~ 335 (468)
T PLN02450 265 HIVYSLSKDLGLPGFRVGAIYSNDEMV-------VSAATKMS--SFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQ 335 (468)
T ss_pred EEEEeccccCCCCCccEEEEEECCHHH-------HHHHHHHh--hcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999987653 33343332 2334788999999999987654 368889999999
Q ss_pred HHHHHHHHHHhCCCeeeCCCCceEEEEEcCCC-------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHH
Q 013521 357 NAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HRE 428 (441)
Q Consensus 357 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~ 428 (441)
+++.+.+.|+++|+.+.++.+|+|+|++++.. ...+++..+++++||.+.||+.|+..+++++||+++. +++
T Consensus 336 rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~ 415 (468)
T PLN02450 336 RQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEE 415 (468)
T ss_pred HHHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHH
Confidence 99999999999999888888999999999621 1245778888888999999999987778999999985 889
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
++++++++|++++
T Consensus 416 ~l~~~l~ri~~~l 428 (468)
T PLN02450 416 TLDLAMKRLKSFV 428 (468)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=402.15 Aligned_cols=352 Identities=21% Similarity=0.349 Sum_probs=285.0
Q ss_pred CCCCeEEeCCCCCC----CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCC
Q 013521 70 PDARLIRLGIGDTT----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDG 143 (441)
Q Consensus 70 ~~~~~i~l~~g~~~----~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G 143 (441)
.++++|+|++|+|+ +++|+.+.+++.+++.. ....+|++..|..++|+++++|+.+ +.++++++|++|+|
T Consensus 29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G 104 (409)
T PLN02656 29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQS----NKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSG 104 (409)
T ss_pred cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhc----CCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCC
Confidence 45789999999998 78889999999988864 4556899999999999999999975 56688999999999
Q ss_pred cHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccE
Q 013521 144 AQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDI 217 (441)
Q Consensus 144 ~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~ 217 (441)
+++++.+ +..++++||+|++++|+|+.+...+...| .+++.+++++++++..+++. .+++++
T Consensus 105 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~ 172 (409)
T PLN02656 105 CTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRH------------LEVRYVDLLPEKGWEVDLDAVEALADQNTVA 172 (409)
T ss_pred hHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcC------------CEEEEEeCCCcCCCCCCHHHHHHHhccCceE
Confidence 9999997 56678999999999999999988888888 58889998655555555432 357889
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
+++++||||||.++|.+++++|+++|++||++||+||+|.+|.+++. ..++..++ ..+++|+++||||.|++||+|+|
T Consensus 173 v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~vi~~~SfSK~f~~pGlRiG 251 (409)
T PLN02656 173 LVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFG-SIVPVLTLGSLSKRWIVPGWRLG 251 (409)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhc-ccCcEEEEcccchhccCcceeEE
Confidence 99999999999999999999999999999999999999999988753 34454453 24679999999999999999999
Q ss_pred EEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eeC
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK-VNG 374 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~ 374 (441)
|++++++........+++.+...... ..+++.+.|.++.+++++....++++.++.++++++.+.+.|+++ ++. +..
T Consensus 252 ~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~ 330 (409)
T PLN02656 252 WFVTTDPSGSFRDPKIVERIKKYFDI-LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHK 330 (409)
T ss_pred EEEEeCcccccccHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcC
Confidence 99996320000000114555544333 345788999999999975445688999999999999999999987 333 346
Q ss_pred CCCceEEEEEcCC------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFPG------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~~------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|.+|+|+|++++. .++.+++..+++++||.+.||+.|+. ++++||+++.+++++++++++|++++
T Consensus 331 p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~--~~~iRi~~~~~~e~l~eal~rl~~~~ 401 (409)
T PLN02656 331 PEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGL--KNWLRITFAADPSSLEEALGRIKSFY 401 (409)
T ss_pred CCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCC--CCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 7789999999861 13456777788888999999999963 68999999888999999999998763
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-51 Score=399.48 Aligned_cols=343 Identities=19% Similarity=0.289 Sum_probs=285.8
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~al 148 (441)
.++++|+.|.|+.+.|+.+++++.+.+. ....+|++..|..+||+++++|+.+ +.+++++ +|++|+|+++++
T Consensus 26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~-----~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al 100 (387)
T PRK08912 26 HGAINLGQGFPDDPGPEDVRRAAADALL-----DGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEAL 100 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHH
Confidence 4689999999988878888888888765 3346798889999999999999975 5567888 999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||+|++++|+|+.+...++..| .+++.++++.+ ++..+++. .+++++++++|
T Consensus 101 ~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~v~l~~ 167 (387)
T PRK08912 101 AAALLALVEPGDEVVLFQPLYDAYLPLIRRAG------------GVPRLVRLEPP-HWRLPRAALAAAFSPRTKAVLLNN 167 (387)
T ss_pred HHHHHHhcCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEEecCcc-cCcCCHHHHHHHhCccceEEEEeC
Confidence 87 57778999999999999999999999988 58888888643 33333222 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
||||||.++|.+++++|+++|++|+++||+||+|.++.+++. ..++..+++..+++++++||||.+|++|+|+||++++
T Consensus 168 p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~ 247 (387)
T PRK08912 168 PLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAA 247 (387)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecC
Confidence 999999999999999999999999999999999999887652 3455555544578999999999999999999999999
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEE
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 381 (441)
+++ .+.+.........+.+...|.++.+.+.. ..++++++++.++++++.+.+.|++.|+.+.++.+++|+
T Consensus 248 ~~~--------~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g~~~l 318 (387)
T PRK08912 248 PPL--------LRVLAKAHQFLTFTTPPNLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFL 318 (387)
T ss_pred HHH--------HHHHHHHHhhccccCChHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEE
Confidence 887 45565555444445677788888787763 346778999999999999999999999888887889999
Q ss_pred EEEcCC----CChHHHHHHHHHhcCeEEeCCCCcCC--CCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 382 WVQFPG----SSSWDVFAEILEKTHILTIPGSGFGP--GGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 382 ~~~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|++++. .++.++++.+++++||.+.||..|+. ...+++||+++.+++.+++++++|++++
T Consensus 319 ~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l 384 (387)
T PRK08912 319 TVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAAR 384 (387)
T ss_pred EecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 999973 35677888888888999999999953 3468999999888999999999998864
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=402.21 Aligned_cols=346 Identities=27% Similarity=0.475 Sum_probs=290.7
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~a 147 (441)
+.++++|+.|.|+.+.|+.+++++.+.+.. ....+|++..|..+||+++++|+.+ ++.++++ +|++|+|++++
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~ 103 (395)
T PRK08175 28 GEDIIDFSMGNPDGPTPPHIVEKLCEVAQR----PDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEG 103 (395)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhC----CCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHH
Confidence 467999999999887788788888877643 3456899899999999999999975 5667777 89999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+++ +..+++|||+|++++|+|+.+...+...| .+++.++.+.++++..++++ .+++++++++
T Consensus 104 l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~ 171 (395)
T PRK08175 104 LAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAG------------AQVRSVPLVEGVDFFNELERAIRESYPKPKMMILG 171 (395)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcC------------CeEEEEecccCCCcHHHHHHHHhhccCCceEEEEe
Confidence 997 56778999999999999999988888888 58889998876555444332 2478999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
+||||||.+++.+++++|+++|++||++||+||+|.++.+++. +.++..+++..+++++++||||.||+||+|+||+++
T Consensus 172 ~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~ 251 (395)
T PRK08175 172 FPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG 251 (395)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC
Confidence 9999999999999999999999999999999999999887653 445555544457789999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ ++.+.........+++.+.|.++.+++.+ ...+++++++.++++++.+.+.|+++|+.+..+.+|+|
T Consensus 252 ~~~l--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~g~~ 322 (395)
T PRK08175 252 NPEL--------VSALARIKSYHDYGTFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMY 322 (395)
T ss_pred CHHH--------HHHHHHHHhhcccCCCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEE
Confidence 8877 46666666555556777889888888864 35788999999999999999999998888777789999
Q ss_pred EEEEcCCC----ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFPGS----SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|++++.. ++.+++.++++++||.|.||+.|+..+++++||+++.+.+.+++++++|++++
T Consensus 323 i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l 387 (395)
T PRK08175 323 VWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMF 387 (395)
T ss_pred EEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 99999842 35778888888889999999999876678999999878899999999998764
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-51 Score=401.48 Aligned_cols=349 Identities=21% Similarity=0.356 Sum_probs=284.8
Q ss_pred CCCCCeEEeCCCCCC----CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh--------CCCCCC
Q 013521 69 HPDARLIRLGIGDTT----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD--------MGIEGD 136 (441)
Q Consensus 69 ~~~~~~i~l~~g~~~----~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~--------~~~~~~ 136 (441)
..++++|+|+.|.|+ +.+++.+.+++.+.+.. ....+|++..|..+||++||+|+.+. ..++++
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~----~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~ 105 (412)
T PTZ00433 30 PSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDS----QECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKD 105 (412)
T ss_pred CCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhc----CCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChh
Confidence 356789999999986 45788899999887764 34568988889999999999999752 447899
Q ss_pred cEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC----
Q 013521 137 EIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST---- 211 (441)
Q Consensus 137 ~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~---- 211 (441)
+|++|+|+++++.+ +..++++||.|++++|+|+.+...++..| .+++.++++.++++..+++.
T Consensus 106 ~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~i~~~~~~~~~~d~~~l~~~ 173 (412)
T PTZ00433 106 NVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYG------------IEMRFYNCRPEKDWEADLDEIRRL 173 (412)
T ss_pred hEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcC------------CEEEEEecCccccCcCCHHHHHHH
Confidence 99999999999998 56778999999999999999999999999 58889988765444444332
Q ss_pred -CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccC
Q 013521 212 -TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 212 -~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
..++++|+++|||||||.++|.+++++|+++|++||++||+||+|.+|.+++. ..++..++. ..++|+++||||.+|
T Consensus 174 ~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~SfSK~~~ 252 (412)
T PTZ00433 174 VDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDT-TVPRVILGGTAKNLV 252 (412)
T ss_pred hccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccC-CCceEEEccchhhcC
Confidence 25789999999999999999999999999999999999999999999887653 345555543 235799999999999
Q ss_pred CccceeEEEEee--ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 013521 290 FTGVRLGWTVVP--EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 290 ~~G~r~G~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 367 (441)
+||+|+||++++ +... ..+++.+..... ...+++.+.|.++.+++.+....++++.++.++++++.+.+.|++
T Consensus 253 ~pGlRlG~~i~~~p~~~~----~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 327 (412)
T PTZ00433 253 VPGWRLGWLLLVDPHGNG----GDFLDGMKRLGM-LVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGE 327 (412)
T ss_pred CCCeeEEEEEEeCCcccH----HHHHHHHHHHhh-ccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999973 2110 001344444333 234588999999998997544478899999999999999999998
Q ss_pred C-CCeeeCCCCceEEEEEcCC------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 368 L-GLKVNGGKNAPYVWVQFPG------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 368 ~-g~~~~~~~~~~~~~~~~~~------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+ |+.+..+++|+|+|++++. .++.++++.+++++||.+.||+.|+. ++++||+++..++++++++++|.++
T Consensus 328 ~~~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRis~~~~~e~l~~al~~l~~~ 405 (412)
T PTZ00433 328 CIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTISRPVEVLREAVERIKAF 405 (412)
T ss_pred CCCCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCC--CCeEEEEecCCHHHHHHHHHHHHHH
Confidence 6 7887778899999999863 14678888888777999999999964 5799999988888999999999876
Q ss_pred C
Q 013521 441 L 441 (441)
Q Consensus 441 l 441 (441)
+
T Consensus 406 ~ 406 (412)
T PTZ00433 406 C 406 (412)
T ss_pred H
Confidence 3
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-51 Score=412.90 Aligned_cols=347 Identities=23% Similarity=0.380 Sum_probs=281.5
Q ss_pred CCCCeEEeCCCCC---CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-h-CCCCCCcEEEcCCc
Q 013521 70 PDARLIRLGIGDT---TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-D-MGIEGDEIFISDGA 144 (441)
Q Consensus 70 ~~~~~i~l~~g~~---~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~-~~~~~~~I~~t~G~ 144 (441)
.+.++|+|++|+| ++++|+.+++++.+++.. ..+|++..|..+||++||+|+.+ + .++++++|++|+|+
T Consensus 144 ~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~------~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~ 217 (517)
T PRK13355 144 AGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTD------TEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGV 217 (517)
T ss_pred cCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc------CCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcH
Confidence 3568999999988 466789999999887742 24699999999999999999965 2 35789999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEE
Q 013521 145 QSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDII 218 (441)
Q Consensus 145 ~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v 218 (441)
++++.+ +..++++||+|++++|+|+.|...+...| .+++.++++.+++|.++++. .+++++|
T Consensus 218 ~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g------------~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i 285 (517)
T PRK13355 218 SELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAG------------GTAVHYRCDEQSEWYPDIDDIRSKITSRTKAI 285 (517)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCC------------CEEEEeecCcccCCCCCHHHHHHhcCcCceEE
Confidence 999997 67788999999999999999999999998 58889998877677766543 3689999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
++||||||||.+++.+++++|+++|++||++||+||+|.+|.+++. +.++..+.. ...+++++||||.+++||+|+||
T Consensus 286 ~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~-~~~vi~~~S~SK~~~~~G~RiG~ 364 (517)
T PRK13355 286 VIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAP-DLFCVTFSGLSKSHMIAGYRIGW 364 (517)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCC-CCeEEEEecchhhccCcccceEE
Confidence 9999999999999999999999999999999999999999988753 456666532 23578899999999999999999
Q ss_pred EEee--ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 013521 298 TVVP--EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG--FQALRTVIDYYKENAKIIVDAFQSL-GLKV 372 (441)
Q Consensus 298 l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 372 (441)
++++ ++++. .+++.+... .....+++.++|.++.++|.+.. .+++...+. +.++++++.+.|+++ |+.+
T Consensus 365 ~i~~~~~~~~~----~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~-~~~~r~~l~~~L~~~~g~~~ 438 (517)
T PRK13355 365 MILSGNKRIAK----DYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGR-VYEQRELVYNALNAIPGISA 438 (517)
T ss_pred EEeeCchhhHH----HHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHH-HHHHHHHHHHHHhcCCCccc
Confidence 9965 33210 012223222 22334578899999999997432 245555444 445689999999988 8998
Q ss_pred eCCCCceEEEEEcCC-----CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 373 NGGKNAPYVWVQFPG-----SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 373 ~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
..|.+++|+|++++. .++.+++..+++++||.+.||+.|+..++++|||+++.+++++++++++|++++
T Consensus 439 ~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~~rl~~~~ 512 (517)
T PRK13355 439 VKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRLADFF 512 (517)
T ss_pred CCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 888899999999863 246678888888899999999999866789999999888999999999998864
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=397.46 Aligned_cols=344 Identities=26% Similarity=0.428 Sum_probs=289.9
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh--CCCCCCcEEEcCCcHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD--MGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~--~~~~~~~I~~t~G~~~al~ 149 (441)
+++++|+.|+|++++++.+.+++.+.+.+ ...+|++..|..++|+++|+|+.+. ..+++++|++|+|+++++.
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~ 98 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALAD-----GETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALM 98 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHH
Confidence 46899999999999899999999998763 3346988899999999999999764 4488999999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC-CCccCCCCC-----CCCccEEEEcC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE-NNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
+ +..++++||.|++++|+|+.+...++..| .+++.++.+.+ +++..+++. .++++++++++
T Consensus 99 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~ 166 (382)
T PRK06108 99 LAAQALVGPGDEVVAVTPLWPNLVAAPKILG------------ARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINS 166 (382)
T ss_pred HHHHHhcCCCCEEEEeCCCccchHHHHHHCC------------CEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEEC
Confidence 7 56778999999999999999999998888 58899998753 244444322 25789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC-C-CCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-P-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~-~-~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
||||||.++|.+++++|+++|+++|++||+||+|.++.++ + ...++..+.+..+++++++||||.||++|+|+||+++
T Consensus 167 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~ 246 (382)
T PRK06108 167 PNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVA 246 (382)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeC
Confidence 9999999999999999999999999999999999998875 2 2234444433346899999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCce
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAP 379 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 379 (441)
++++ ++.+.........+++.+.|.++.+++.+ +.+++++++++++++++.+.+.|+++ |+.+..+.+|+
T Consensus 247 ~~~~--------~~~~~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~ 317 (382)
T PRK06108 247 PPAL--------GQVLEKLIEYNTSCVAQFVQRAAVAALDE-GEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAM 317 (382)
T ss_pred CHHH--------HHHHHHHHHhcccCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeE
Confidence 9877 45565555545566889999999999974 35678899999999999999999887 88888778899
Q ss_pred EEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 380 YVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 380 ~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|+|++++. .++.+++.++++++||.+.||+.|++.+.+++||+++.+++++++++++|++++
T Consensus 318 ~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 318 YAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFL 380 (382)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 99999974 356788888888889999999999766688999999778999999999998864
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-51 Score=398.48 Aligned_cols=342 Identities=23% Similarity=0.300 Sum_probs=289.2
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCC-cEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGD-EIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~-~I~~t~G~~~al 148 (441)
.++++|+.|.|++++++.+.+++.+.+.. ...+|++..|..++|+++++++.+.++ .+++ +|++|+|+++++
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al 104 (386)
T PRK09082 30 HGAINLSQGFPDFDGPPYLVEALAYAMAA-----GHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEAL 104 (386)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHc-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHH
Confidence 46899999999988888899999887752 345798889999999999999976334 4554 899999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||+|++++|+|+.+...++..| .+++.++.+.+ ++..+++. .++++++++++
T Consensus 105 ~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~l~~ 171 (386)
T PRK09082 105 FAAILALVRPGDEVIVFDPSYDSYAPAIELAG------------GRAVRVALQPP-DFRVDWQRFAAAISPRTRLIILNT 171 (386)
T ss_pred HHHHHHHcCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEEecCcc-cccCCHHHHHHhcCccceEEEEeC
Confidence 97 67778999999999999999999999888 58999998653 34444322 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
||||||.+++.+++++|+++|++||+++|+||+|.++.+++. +.++..+++..+++++++||||.+|+||+|+||++++
T Consensus 172 p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~ 251 (386)
T PRK09082 172 PHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAP 251 (386)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCC
Confidence 999999999999999999999999999999999999888653 4566666555678999999999999999999999999
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEE
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 381 (441)
+++ ++.+.........+++.+.|.++.+++.+ ...+++++++.++++++.+.+.|++.++++.++.+|+|+
T Consensus 252 ~~l--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~ 322 (386)
T PRK09082 252 AAL--------SAEFRKVHQYNTFTVNTPAQLALADYLRA-EPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQ 322 (386)
T ss_pred HHH--------HHHHHHHHhhhcCCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCeeEEE
Confidence 887 46666666555556899999988888863 346788899999999999999999988888888889999
Q ss_pred EEEcC---CCChHHHHHHHHHhcCeEEeCCCCcC--CCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 382 WVQFP---GSSSWDVFAEILEKTHILTIPGSGFG--PGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 382 ~~~~~---~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
|++++ +.++.+++..+++++||.+.||+.|+ +.+.+++||+++.+++++++++++|+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~~ 386 (386)
T PRK09082 323 LVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQL 386 (386)
T ss_pred EEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhhC
Confidence 99986 34677888888888899999999885 3456899999988899999999999863
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-51 Score=396.75 Aligned_cols=336 Identities=21% Similarity=0.297 Sum_probs=287.0
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.++++|+.|+|+++.|+.+ +++.+++. ....+|++..|.++||++||+++. ++++++|++|+|+++++.+
T Consensus 25 ~~~~~~~~~~e~~~~~~~~~-~~~~~~~~-----~~~~~Y~~~~G~~~lr~~ia~~~~---~~~~~~vi~t~G~~~al~~ 95 (373)
T PRK07324 25 ESCIDSLTLEELLALAGKNP-EAFYQELG-----QKKLTYGWIEGSPEFKEAVASLYQ---NVKPENILQTNGATGANFL 95 (373)
T ss_pred cCCCCCCcHHHHHhccCcch-HHHHHHHh-----cCCccCCCCCCCHHHHHHHHHHhc---CCChhhEEEcCChHHHHHH
Confidence 46799999999998888877 88888775 344589998999999999999973 4788999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPN 224 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~ 224 (441)
+..++++||+|+++.|+|+.+...++..| .+++.++++.++++.++++. .+++|++++++||
T Consensus 96 ~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g------------~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~ 163 (373)
T PRK07324 96 VLYALVEPGDHVISVYPTYQQLYDIPESLG------------AEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNAN 163 (373)
T ss_pred HHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCC
Confidence 67788999999999999999999999898 58999999876666665432 3688999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.++|.+++++|+++|++||++||+||+|.++.+++...++... .+++|+++||||.+|+||+|+||+++++++
T Consensus 164 NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~---~~~~I~~~s~SK~~~~~G~RiG~i~~~~~l 240 (373)
T PRK07324 164 NPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADL---YEKGISTNSMSKTYSLPGIRVGWIAANEEV 240 (373)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhc---cCCEEEEecchhhcCCccceeEEEecCHHH
Confidence 99999999999999999999999999999999998876544444443 457899999999999999999999998777
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWV 383 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 383 (441)
++.+...+.....+++.+.|.++..++++ ...+++++++.++++++.+.+.|++. ++.+..|.+|+|+|+
T Consensus 241 --------i~~~~~~~~~~~~~~~~~~q~~a~~~l~~-~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i 311 (373)
T PRK07324 241 --------IDILRKYRDYTMICAGVFDDMLASLALEH-RDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFV 311 (373)
T ss_pred --------HHHHHHHhCcEEecCChHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEE
Confidence 56677766655566788999988888863 34678899999999999999999887 777777788898888
Q ss_pred EcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 384 QFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 384 ~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+++ +.++.+++.++++++||.+.||+.|+. ++++||+++.+++.+++++++|++++
T Consensus 312 ~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~--~~~iRis~~~~~~~l~~~l~rl~~~l 368 (373)
T PRK07324 312 KLDVDMPSEDFCLKLLKETGVLLVPGNRFDL--EGHVRIGYCCDTETLKKGLKKLSEFL 368 (373)
T ss_pred EeCCCCCHHHHHHHHHHhcCEEEECccccCC--CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 887 456788999999888999999999964 57999999888999999999998864
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=397.71 Aligned_cols=343 Identities=29% Similarity=0.460 Sum_probs=290.7
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~ 149 (441)
.++++|+.|+|++++++.+.+++.+.+. ....+|.+..|..+||+++|+++.+ +.++++++|++|+|+++++.
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~ 107 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALD-----EGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATY 107 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHH
Confidence 3689999999998888888999888765 3345798889999999999999975 55688999999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSP 223 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p 223 (441)
+ +..++++||.|++++|+|+++...+...| .+++.++++.++++..+++. .++++++++++|
T Consensus 108 ~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p 175 (391)
T PRK08361 108 LAFESLLEEGDEVIIPDPAFVCYVEDAKIAE------------AKPIRIPLREENEFQPDPDELLELITKRTRMIVINYP 175 (391)
T ss_pred HHHHHhcCCCCEEEEcCCCCcccHHHHHHcC------------CEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCC
Confidence 7 56778999999999999999999888888 58999999876555555332 357899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|||||.++|.+++++|+++|++++++||+||+|.++.+++. ..++..+ ..+++++++||||.+|++|+|+||+++++
T Consensus 176 ~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~~~~~GlRiG~~~~~~ 253 (391)
T PRK08361 176 NNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKY--APDNTILANSFSKTFAMTGWRLGFVIAPE 253 (391)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhc--CCCCEEEEecCchhcCCcHhhhhhhccCH
Confidence 99999999999999999999999999999999999887542 3344444 24678999999999999999999999998
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPY 380 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 380 (441)
++ ++.+.........+++.+.|.++..++.+... .++++.++.++++++.+.+.|+++ ++.+.++++|+|
T Consensus 254 ~~--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~ 325 (391)
T PRK08361 254 QV--------IKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFY 325 (391)
T ss_pred HH--------HHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEE
Confidence 77 35555555544556788999999999986543 678999999999999999999987 888888888999
Q ss_pred EEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|++++. .++.+++..+++++||.+.||+.|+..++++|||+++.+++++++++++|++++
T Consensus 326 ~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l 388 (391)
T PRK08361 326 VFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKAL 388 (391)
T ss_pred EEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 9999973 467888888887789999999999876778999999888889999999998764
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=390.12 Aligned_cols=336 Identities=25% Similarity=0.417 Sum_probs=280.6
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHHHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSDISR 150 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~al~~ 150 (441)
+++|+.|.|++++++.+.+++.+... ...+|+++.|..+||+++++|+.+ +++++++ +|++|+|+++++..
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~ 75 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAVP------EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFH 75 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHh------ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHH
Confidence 68999999998888888888888642 345798889999999999999975 5667887 99999999999998
Q ss_pred -HHHhcCCC---CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 151 -LQMLLGSN---VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 151 -l~~l~~~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+..++++| |+|+++.|+|+.+...++..| .+++.++++.++++..+++. ..++++++++
T Consensus 76 ~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~ 143 (350)
T TIGR03537 76 FPLVFIDPEEDRRRVIFGTPGYPVYERGALFAG------------GEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWIN 143 (350)
T ss_pred HHHHHcCCCCCCceEEEcCCCCcchHHHHHhcC------------CEEEEcccCcccCCccCHHHHHHhhhhccEEEEEe
Confidence 56677877 699999999999999999999 68999998755566544322 3578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
+||||||.+++.+++++|+++|++||++||+||+|.++.++..+.++..+ ..+++|+++||||.+|++|+|+||++++
T Consensus 144 ~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~~g~~GlRiG~~~~~ 221 (350)
T TIGR03537 144 YPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEV--GIENVLAFHSLSKRSGMTGYRSGFVAGD 221 (350)
T ss_pred CCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhc--CcCCEEEEeecccccCCccccceeeecC
Confidence 99999999999999999999999999999999999988766544455544 2468999999999999999999999998
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEE
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 381 (441)
+++ .+.+.........+.+.+.|.++.+.+.+ ..++++.++.++++++.+.+.|++.|+++.++.+|+|+
T Consensus 222 ~~~--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g~~~~ 291 (350)
T TIGR03537 222 EKL--------ISFLRKLRANFGVASPDFVQAAAKAAWSD--DNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYL 291 (350)
T ss_pred HHH--------HHHHHHHHHhhccCCCHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeEEEE
Confidence 777 45566555544445666788877777763 35678889999999999999999989888887789999
Q ss_pred EEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 382 WVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 382 ~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
|++++. .++.++++.|++ +||.+.||+.|+...++++||+++.+++++++++++|+++
T Consensus 292 ~~~~~~~~~~~~l~~~L~~-~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~~ 350 (350)
T TIGR03537 292 WVKVPSGIDAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWERV 350 (350)
T ss_pred EEECCCCCCHHHHHHHHHH-CCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhcC
Confidence 999984 366778888776 5999999999976667899999877889999999999863
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=396.96 Aligned_cols=343 Identities=23% Similarity=0.357 Sum_probs=288.1
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
+.++++|+.|.|+.++++.+.+++.+.+.. ...+|++..|..+||+++++++.+ +..+++++|++|+|+++|+
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 106 (402)
T PRK06107 32 GRSIVDLTVGEPDFDTPDHIKQAAVAAIER-----GETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAI 106 (402)
T ss_pred cCCEEEcCCCCCCCCCCHHHHHHHHHHHHc-----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 457999999999988889899999988763 345799999999999999999976 4556889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||.|++++|+|+.|...+...+ ..++.++.+.++++..+++. .+++++++++|
T Consensus 107 ~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~ 174 (402)
T PRK06107 107 FLALMATLEAGDEVIIPAPYWVSYPDMVLAND------------GTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNA 174 (402)
T ss_pred HHHHHHhcCCCCEEEEecCCCcCHHHHHHHcC------------CEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEEC
Confidence 97 56778999999999999999988777776 36677777654555544322 35788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHc-CcEEEEcccccccccCCC-CCcccccC-CCcceeEEEecCCcccCCccceeEEEE
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKAN-GSIIVYDSAYAAYITDPS-PRSIYEIP-GAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~~~~~~~~~~-~~~~~~~~-~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
||||||.++|.+++++|+++|++| +++||+||+|+++.+++. ..++..+. +..+++++++||||.|++||+|+||++
T Consensus 175 p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~ 254 (402)
T PRK06107 175 PSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAA 254 (402)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeee
Confidence 999999999999999999999998 999999999999887653 34555542 234689999999999999999999999
Q ss_pred eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCc
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNA 378 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 378 (441)
+++++ ++.+.........+++.+.|.++..++.+ +..++++.++.++++++.+.+.|+++ |+.+.++++|
T Consensus 255 ~~~~~--------~~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg 325 (402)
T PRK06107 255 GPADL--------IAAINKLQSQSSSCPSSISQAAAAAALNG-DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGA 325 (402)
T ss_pred cCHHH--------HHHHHHHHHhcccCCChHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcc
Confidence 99887 46677666665667899999999999974 35688999999999999999999987 8888888899
Q ss_pred eEEEEEcCC------------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 379 PYVWVQFPG------------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 379 ~~~~~~~~~------------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|+|++++. .++.+++.++++++||.+.||+.|+. .+++||+++.+.+++++++++|++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~--~~~iRis~~~~~e~l~~~l~~l~~~l 398 (402)
T PRK06107 326 FYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL--SPYFRLSIATSLETLEEACARIERAV 398 (402)
T ss_pred eEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999731 14567888888888999999999964 57999999889999999999998763
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-51 Score=405.34 Aligned_cols=349 Identities=18% Similarity=0.274 Sum_probs=277.2
Q ss_pred CCeEEeCCCCCCC--CC-cHHHHHHHHHHHhh---ccCCCCCCCCCCCcCcHHHHHHHHHHHhhh----CCCCCCcEEEc
Q 013521 72 ARLIRLGIGDTTQ--PI-PDIITSAMAEHAFA---LSTVKGYKGYGAEQGNMALRTAIADKFYKD----MGIEGDEIFIS 141 (441)
Q Consensus 72 ~~~i~l~~g~~~~--~~-~~~~~~al~~~~~~---~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~----~~~~~~~I~~t 141 (441)
.++|+|+.+++.+ .. ++++.+.....+.. +........|++..|.++||++||+|+.+. ..+++++|++|
T Consensus 46 ~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit 125 (496)
T PLN02376 46 HGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMS 125 (496)
T ss_pred CceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEc
Confidence 3699999999865 22 44444433332211 111234456888899999999999999763 34889999999
Q ss_pred CCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHH-hccccccccccCccceeEEeecCCCCCccCCCCC--------
Q 013521 142 DGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVI-VGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-------- 211 (441)
Q Consensus 142 ~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-------- 211 (441)
+|+++++.+ +..+++|||.|++++|+|+++...+.. .| .+++.++++.++++..+++.
T Consensus 126 ~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G------------~~vv~v~~~~~~~~~~~~~~le~a~~~a 193 (496)
T PLN02376 126 GGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTG------------VEIIPVPCSSSDNFKLTVDAADWAYKKA 193 (496)
T ss_pred cchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCC------------CEEEEEeCCCCccCcCCHHHHHHHHHHH
Confidence 999999998 577889999999999999999887774 67 58999999755555444321
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCC-------CcceeEE
Q 013521 212 ---TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPG-------AREVAIE 280 (441)
Q Consensus 212 ---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~-------~~~~~i~ 280 (441)
..++|+|++||||||||.++|.+++++|+++|++|+++||+||+|.++.+++ .+.++.++.. .++++++
T Consensus 194 ~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~v 273 (496)
T PLN02376 194 QESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHI 273 (496)
T ss_pred HhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEE
Confidence 2478999999999999999999999999999999999999999999988765 3456655421 1246788
Q ss_pred EecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHH
Q 013521 281 ISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYKENA 358 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~ 358 (441)
++||||.||+||+|+||++++++.+ .+.+.... ....++.++|.++.+++.+..+ .++++.++.+++++
T Consensus 274 v~S~SK~~glpGlRvG~li~~~~~l-------~~~~~~~~--~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~ 344 (496)
T PLN02376 274 VYSLSKDMGLPGFRVGIVYSFNDSV-------VSCARKMS--SFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRH 344 (496)
T ss_pred EEeccccCCCCcceEEEEEECCHHH-------HHHHHHHh--hcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976653 33333222 2334789999999999987655 57888899999999
Q ss_pred HHHHHHHHhCCCeeeCCCCceEEEEEcCCC--------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHH
Q 013521 359 KIIVDAFQSLGLKVNGGKNAPYVWVQFPGS--------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREY 429 (441)
Q Consensus 359 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~ 429 (441)
+.+.+.|++.|+.+.++.+|+|+|++++.. .+.++.+.++++.||.+.||+.|+..+++|+||+|+. +++.
T Consensus 345 ~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~ 424 (496)
T PLN02376 345 KVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDT 424 (496)
T ss_pred HHHHHHHHHCCCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHH
Confidence 999999999899888888899999999631 1256778888888999999999987678999999975 7899
Q ss_pred HHHHHHHHHhhC
Q 013521 430 ISEACRRLKNFL 441 (441)
Q Consensus 430 ~~~~l~~l~~~l 441 (441)
+++++++|++++
T Consensus 425 l~~al~rl~~~l 436 (496)
T PLN02376 425 LHVALGRIQDFV 436 (496)
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=396.07 Aligned_cols=348 Identities=22% Similarity=0.360 Sum_probs=283.6
Q ss_pred CCCCeEEeCCCCCC----CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-hCCCCCCcEEEcCCc
Q 013521 70 PDARLIRLGIGDTT----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-DMGIEGDEIFISDGA 144 (441)
Q Consensus 70 ~~~~~i~l~~g~~~----~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~~~I~~t~G~ 144 (441)
+++++++|+.|+|+ +++++.+.+++.+.+.. ....+|++..|..+||+++|+|+.+ +..+++++|++|+|+
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~ 104 (401)
T TIGR01264 29 PEKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDS----GKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGC 104 (401)
T ss_pred cCCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhc----cCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcCh
Confidence 34678999999985 67888999999887764 3455798899999999999999975 445789999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEE
Q 013521 145 QSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDII 218 (441)
Q Consensus 145 ~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v 218 (441)
++++.+ +..++++||+|++++|+|+.+...+...| .+++.++++.++++..+++. ..+++++
T Consensus 105 ~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g------------~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v 172 (401)
T TIGR01264 105 SHAIEMCIAALANAGQNILVPRPGFPLYETLAESMG------------IEVKLYNLLPDKSWEIDLKQLESLIDEKTAAL 172 (401)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcC------------CEEEEeecCCccCCCCCHHHHHHHhccCceEE
Confidence 999998 57778999999999999999999999998 58888888655444444332 2568999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+++|||||||.+++.+++++|+++|+++|++||+||+|.+|.+++. ..++..++. ..++|+++||||.|++||+|+||
T Consensus 173 ~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~~~~~GlRiG~ 251 (401)
T TIGR01264 173 IVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSS-TVPILSCGGLAKRWLVPGWRLGW 251 (401)
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCC-CCcEEEEccCcccCCCccceEEE
Confidence 9999999999999999999999999999999999999999987653 345555542 23589999999999999999999
Q ss_pred EEeecc--ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC
Q 013521 298 TVVPEE--LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNG 374 (441)
Q Consensus 298 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 374 (441)
+++++. .+ ....+.+..... ...+++.+.|.++.+++.+....++++.++.++++++.+.+.|+++ |+.+..
T Consensus 252 iv~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~ 326 (401)
T TIGR01264 252 IIIHDRRGIL----RDIRDGLVKLSQ-RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVM 326 (401)
T ss_pred EEecCcchhH----HHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC
Confidence 999852 11 001233333222 2345788999999999975445788999999999999999999988 777767
Q ss_pred CCCceEEEEEcCC------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFPG------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~~------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|++|+|+|++++. .++.+++..+++++||.+.||+.|+. ++++||+++.+++++++++++|.+++
T Consensus 327 p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~--~~~iRis~~~~~~~l~~~l~rl~~~~ 397 (401)
T TIGR01264 327 PSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEY--PGFFRVVLTVPVVMMEEACSRIQEFC 397 (401)
T ss_pred CCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCC--CCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 7899999999752 24677888888778999999999863 67999999888899999999998764
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=392.93 Aligned_cols=341 Identities=24% Similarity=0.391 Sum_probs=283.6
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCC-CCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIE-GDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~-~~~I~~t~G~~~al 148 (441)
+++++|+.|.|++++++.+.+++.+.+. .....|++..|..++|+++++|+.+ +..++ +++|++|+|+++++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al 104 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAID-----ANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEAL 104 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHH
Confidence 4699999999998888888888888775 2334698889999999999999975 44455 47999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--------CCCccEEE
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--------TSRTDIIF 219 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--------~~~~~~v~ 219 (441)
.+ +..++++||+|++++|+|+++..+++..| .+++.++.+.+ ++..+.+. .+++++++
T Consensus 105 ~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~~~~i~ 171 (391)
T PRK07309 105 SASLTAILEPGDKVLLPAPAYPGYEPIVNLVG------------AEIVEIDTTEN-DFVLTPEMLEKAILEQGDKLKAVI 171 (391)
T ss_pred HHHHHHhcCCCCEEEEeCCCCcchHHHHHHcC------------CEEEEEecCCc-CCcCCHHHHHHHhhccCCCeEEEE
Confidence 98 67778999999999999999999999888 58888887643 33333221 13689999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
+++||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..+ .++++++++||||.||+||+|+||+
T Consensus 172 l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~g~~GlRvG~~ 249 (391)
T PRK07309 172 LNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTGWRIGLI 249 (391)
T ss_pred EECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh--ccCCEEEEecChhhccCccceeEEE
Confidence 999999999999999999999999999999999999999988543 3455554 2478999999999999999999999
Q ss_pred EeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCc
Q 013521 299 VVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNA 378 (441)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 378 (441)
+++++++ +.+.........+++.++|.++.+++.+. ..+....++.++++++.+.+.|+++|+.+..+.+|
T Consensus 250 v~~~~~~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg 320 (391)
T PRK07309 250 FAPAEFT--------AQLIKSHQYLVTAATTMAQFAAVEALTNG-KDDALPMKKEYIKRRDYIIEKMTDLGFKIIKPDGA 320 (391)
T ss_pred EeCHHHH--------HHHHHHHhhcccCCChHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCee
Confidence 9998874 55555444444567889999999998753 33346778899999999999999989988888889
Q ss_pred eEEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 379 PYVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 379 ~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|+|++++.. ++.+++.++++++||.+.||+.|+..++++|||+++.+.+++++++++|++++
T Consensus 321 ~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~ 386 (391)
T PRK07309 321 FYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYM 386 (391)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 9999999732 45678888888889999999999877789999999878899999999998763
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-50 Score=390.47 Aligned_cols=344 Identities=21% Similarity=0.312 Sum_probs=283.5
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CC-CCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IE-GDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~-~~~I~~t~G~~~al 148 (441)
.+.++|+.|.+++++|+.+.+++.+.+.. .....|++..|..++|+++++++.+..+ ++ +++|++|+|+++++
T Consensus 27 ~~~~~l~~g~~~~~~~~~~~~a~~~~~~~----~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l 102 (389)
T PRK05957 27 PGTISLGQGVVSYPPPPEAIEALNNFLAN----PENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAF 102 (389)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHH
Confidence 36899999999988899999999987754 3345798899999999999999976444 45 67999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPN 224 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~ 224 (441)
.. +..++++||.|++++|+|+.+...++..| .+++.++.+.+.+++.+ ++. .+++++|++++||
T Consensus 103 ~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~ 170 (389)
T PRK05957 103 MNAILAITDPGDEIILNTPYYFNHEMAITMAG------------CQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPN 170 (389)
T ss_pred HHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcC------------CEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCC
Confidence 87 56778999999999999999988888788 58888887643232222 222 3579999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC-CcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
||||.++|.+++++|+++|++||++||+||+|.++.+++.+ .++..+.+..+++|+++||||.+|+||+|+||++++++
T Consensus 171 NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~ 250 (389)
T PRK05957 171 NPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIH 250 (389)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHH
Confidence 99999999999999999999999999999999999876432 24444433456899999999999999999999999988
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CC-eeeCCCCceEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GL-KVNGGKNAPYV 381 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~~~ 381 (441)
+ ++++.........+++.+.|.++..++++ +..++++.++.++++++.+.+.|+++ ++ .+.++.+|+|+
T Consensus 251 ~--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~ 321 (389)
T PRK05957 251 L--------LEAIKKIQDTILICPPVVSQYAALGALQV-GKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYC 321 (389)
T ss_pred H--------HHHHHHHHhhcccCCCcHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEE
Confidence 7 46676666555556788899998888874 33567888888999999999999887 53 66677789999
Q ss_pred EEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 382 WVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 382 ~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
|++++ +.++.++++++++++||.+.||+.|+....+++||+++. +++++++++++|.+.
T Consensus 322 ~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~ 382 (389)
T PRK05957 322 FLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQG 382 (389)
T ss_pred EEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHH
Confidence 99997 556788999998878999999999976667799999964 788999999999875
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=390.76 Aligned_cols=343 Identities=23% Similarity=0.352 Sum_probs=281.1
Q ss_pred CCCeEEeCCCCC---CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcH
Q 013521 71 DARLIRLGIGDT---TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~---~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~ 145 (441)
+.++++|+.|.| ++++++.+.+++.+.+.. ....|++..|..+||+++|+|+.+ +.++++++|++|+|++
T Consensus 29 ~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 103 (398)
T PRK08363 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKE-----GHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVT 103 (398)
T ss_pred CCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHc-----CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHH
Confidence 468999999998 677889999999987763 234688889999999999999975 5668999999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEe-ecCCCCCccCCCCC-----CCCccEE
Q 013521 146 SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYM-NCRPENNFFPDLST-----TSRTDII 218 (441)
Q Consensus 146 ~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v-~~~~~~~~~~~~~~-----~~~~~~v 218 (441)
+++.+ +..++++||.|++++|+|+++...+...| .+++.+ +.++ +++..+++. .++++++
T Consensus 104 ~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~v~~~~~~~-~~~~~d~~~l~~~~~~~~~~v 170 (398)
T PRK08363 104 EALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYG------------GVPVEYRTIEE-EGWQPDIDDIRKKITEKTKAI 170 (398)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcC------------CEEEEeccccc-cCCcCCHHHHHhhCCcceEEE
Confidence 99998 56778999999999999999999888888 466666 4433 344444321 3578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++.+.++..++. .+++++++||||.|++||+|+||+
T Consensus 171 ~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~~~~~GlRiG~~ 249 (398)
T PRK08363 171 AVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTK-DVPVIVMNGLSKVYFATGWRLGYI 249 (398)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCc-CCcEEEEecchhccCCccceEEEE
Confidence 9999999999999999999999999999999999999999887665555555543 357999999999998999999999
Q ss_pred Ee--eccccccCCchhHHHHHHHHh---hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 013521 299 VV--PEELRYSNGYPVIKDFNRIVC---TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKV 372 (441)
Q Consensus 299 ~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 372 (441)
++ +++++ +.+..... ....+++.++|.++.+++.+ ..+++++.++.++++++.+.+.|.++ ++.+
T Consensus 250 ~~~~~~~~~--------~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 320 (398)
T PRK08363 250 YFVDPEGKL--------AEVREAIDKLARIRLCPNTPAQFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGIST 320 (398)
T ss_pred EEeCcHHHH--------HHHHHHHHHHhcccccCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCEe
Confidence 98 55542 22222211 11245788999999988874 35788999999999999999999887 7888
Q ss_pred eCCCCceEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 373 NGGKNAPYVWVQFPG---SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 373 ~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
..+.+|+|+|++++. .++.+++..+++++||.+.||+.|+..+++++||+++.+++++++++++|++++
T Consensus 321 ~~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~ 392 (398)
T PRK08363 321 TKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFM 392 (398)
T ss_pred cCCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 777889999999874 245677778888889999999999766678999999878899999999998753
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=386.52 Aligned_cols=345 Identities=25% Similarity=0.345 Sum_probs=287.5
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~a 147 (441)
.+.+.++|+.|+|+.++++.+.+++.+.+.. ....+|++..|.++||+++++++.+ +..+++++|++|+|++++
T Consensus 27 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 102 (386)
T PRK07550 27 ADGPLIDLSQAVPGYPPPPELLRALAEAAAD----PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQA 102 (386)
T ss_pred cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhC----cCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHH
Confidence 3567999999999888888899998887742 4456798889999999999999975 556789999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..++++||+|++++|+|+.+...++..| .+++.++.++++++.++.+. ..++++++++
T Consensus 103 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 170 (386)
T PRK07550 103 FWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLG------------IRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALV 170 (386)
T ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcC------------CEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEe
Confidence 998 56678999999999999999998888888 68999999765566555322 3578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
+||||||.++|.+++++|+++|++||++||+||+|.+|.++.. +.++....+.++++++++||||.+|+||+|+||+++
T Consensus 171 ~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~ 250 (386)
T PRK07550 171 TPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVA 250 (386)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeec
Confidence 9999999999999999999999999999999999998876432 333433322356799999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCce
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAP 379 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 379 (441)
++++ ++.+.........+++.++|.++..++.+ ..+++++.++.++++++.+.+.|+++ ++.+. +.+|+
T Consensus 251 ~~~~--------~~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~g~~ 320 (386)
T PRK07550 251 SPAR--------IAEIEKFMDTVAICAPRIGQIAVAWGLPN-LADWRAGNRAEIARRRDAFRAVFARLPGWELL-ASGAY 320 (386)
T ss_pred CHHH--------HHHHHHHHhhcccCCCcHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHhCCCceeC-CCceE
Confidence 8877 45566655555556788999999888874 23678889999999999999999986 66554 46889
Q ss_pred EEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 380 YVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 380 ~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
|+|++++ +.++.+++..+++++||.+.||+.|+..+++++||+++. +++++++++++|+++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 321 FAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred EEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 9999997 346788888888888999999999976667899999975 789999999999875
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=392.84 Aligned_cols=348 Identities=20% Similarity=0.313 Sum_probs=277.5
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhc-------cCCCCCCCCCCCcCcHHHHHHHHHHHhhhC----CCCCCcEEE
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFAL-------STVKGYKGYGAEQGNMALRTAIADKFYKDM----GIEGDEIFI 140 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~-------~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~----~~~~~~I~~ 140 (441)
.++|+|+..++.+ ..+.+.+.+.+..... ........|++..|..+||+++|+|+.+.+ .+++++|++
T Consensus 47 ~g~i~l~~aeN~l-~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivi 125 (447)
T PLN02607 47 SGVIQMGLAENQV-SFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVL 125 (447)
T ss_pred CceEEEechhhhh-hHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEE
Confidence 4699999999754 4455666665543210 011233458788899999999999997632 478999999
Q ss_pred cCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHH-hccccccccccCccceeEEeecCCCCCccCCCCC-------
Q 013521 141 SDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVI-VGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------- 211 (441)
Q Consensus 141 t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------- 211 (441)
|+|+++++.+ +..+++|||.|++++|+|+++...+.. .| .++++++.+.+++|..+.+.
T Consensus 126 t~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g------------~~vv~v~~~~~~~f~~~~~~le~a~~~ 193 (447)
T PLN02607 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTG------------VKIVPIHCDSSNNFQVTPQALEAAYQE 193 (447)
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCC------------cEEEEEeCCCCCCCcCCHHHHHHHHHH
Confidence 9999999998 567789999999999999999877764 55 58889988766666544322
Q ss_pred ----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccC------CCcceeEE
Q 013521 212 ----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIP------GAREVAIE 280 (441)
Q Consensus 212 ----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~------~~~~~~i~ 280 (441)
..++|+++++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++.++. +.++++++
T Consensus 194 a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~v 273 (447)
T PLN02607 194 AEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHI 273 (447)
T ss_pred HHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEE
Confidence 24789999999999999999999999999999999999999999998877643 45655431 22578999
Q ss_pred EecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHH
Q 013521 281 ISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYKENA 358 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~ 358 (441)
++||||.||++|+|+||+++.++.+ .+.+... ..+..+|.++|.++.++|.+..+ .++...++++++++
T Consensus 274 i~s~SK~fg~~GlRvG~ivs~n~~l-------~~~~~~~--~~~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~ 344 (447)
T PLN02607 274 VYSLSKDLGLPGFRVGTIYSYNDKV-------VTTARRM--SSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRY 344 (447)
T ss_pred EEcchhcCCCCcceEEEEEEcCHHH-------HHHHHHH--hhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999854432 2333322 22334788899999999997655 57888999999999
Q ss_pred HHHHHHHHhCCCeeeCCCCceEEEEEcCCC-------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHH
Q 013521 359 KIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYI 430 (441)
Q Consensus 359 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~ 430 (441)
+.+.+.|++.|+.+.++.+|+|+|++++.. .+.+++.++++++||.+.||+.|+...++|+||+|+. +++.+
T Consensus 345 ~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l 424 (447)
T PLN02607 345 EMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTL 424 (447)
T ss_pred HHHHHHHHhCCCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHH
Confidence 999999999999888888999999999631 1235677888878999999999987778999999986 88999
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
+++++||.+++
T Consensus 425 ~~gl~Ri~~~l 435 (447)
T PLN02607 425 EVALKRIHRFM 435 (447)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-49 Score=386.19 Aligned_cols=349 Identities=23% Similarity=0.372 Sum_probs=275.1
Q ss_pred CCCCCeEEeCCCCC---CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-hC-CCCCCcEEEcCC
Q 013521 69 HPDARLIRLGIGDT---TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-DM-GIEGDEIFISDG 143 (441)
Q Consensus 69 ~~~~~~i~l~~g~~---~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~-~~~~~~I~~t~G 143 (441)
+++.++++|+.|.| ++++++.+.+++.+.+. ...+|+++.|..+||+++|+|+.+ +. ++++++|++|+|
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~------~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G 103 (404)
T PRK09265 30 EEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLP------TAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNG 103 (404)
T ss_pred HcCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhh------cCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCC
Confidence 35668999999987 45678888888887653 235799899999999999999965 33 789999999999
Q ss_pred cHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccE
Q 013521 144 AQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDI 217 (441)
Q Consensus 144 ~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~ 217 (441)
+++++.+ +..++++||+|++++|+|+.+...+...| .+++.++.+.++++..+.+. .+++++
T Consensus 104 ~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~ 171 (404)
T PRK09265 104 VSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSG------------GKPVHYLCDEEAGWFPDLDDIRSKITPRTKA 171 (404)
T ss_pred hHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHhccccceE
Confidence 9999987 56778999999999999999999988888 47777777654455444322 357899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
|+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..++. ..++++++||||.+|+||+|+|
T Consensus 172 v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pGlRiG 250 (404)
T PRK09265 172 IVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAP-DLLCVTFNGLSKAYRVAGFRVG 250 (404)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCC-CceEEEEecchhhccCcccceE
Confidence 99999999999999999999999999999999999999999887653 445655532 3478999999999999999999
Q ss_pred EEEeec--cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 013521 297 WTVVPE--ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSL-GLKV 372 (441)
Q Consensus 297 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 372 (441)
|++++. ... ..+++.+... .....+++.++|.++.++|.+... ..+.+.++.++++++.+.+.|+++ |+.+
T Consensus 251 ~~v~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~ 325 (404)
T PRK09265 251 WMVLSGPKKHA----KGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSC 325 (404)
T ss_pred EEEEeCchHHH----HHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999742 211 0012223222 223345788999999999864322 222233356778899999999887 8888
Q ss_pred eCCCCceEEEEEcCCC-----ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 373 NGGKNAPYVWVQFPGS-----SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 373 ~~~~~~~~~~~~~~~~-----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
..+.+|+|+|++++.. ++.+++..+++++||.+.||+.|+..+++++|++++.+++++++++++|++++
T Consensus 326 ~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~rl~~~l 399 (404)
T PRK09265 326 VKPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFL 399 (404)
T ss_pred cCCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 8888999999999732 35566777788889999999999765678999999778999999999998763
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=385.33 Aligned_cols=343 Identities=22% Similarity=0.312 Sum_probs=283.2
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~al 148 (441)
.++++|+.|.|+.+.|+.+.+++.+.+. ....+|++..|..++|+++++|+.+ +..++++ +|++|+|+++++
T Consensus 24 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~-----~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al 98 (387)
T PRK07777 24 TGAVNLGQGFPDEDGPPEMLEAAQEAIA-----GGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAI 98 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence 3689999999988777778888777665 2346798889999999999999865 4455665 799999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCC-CccCCCCC-----CCCccEEEEc
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~-----~~~~~~v~i~ 221 (441)
.+ +..++++||.|+++.|+|+.+..++...| .+++.++.++++ ++..+++. .+++++|+++
T Consensus 99 ~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~ 166 (387)
T PRK07777 99 AAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAG------------AHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVN 166 (387)
T ss_pred HHHHHHhcCCCCEEEEeCCCchhhHHHHHHCC------------CEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEc
Confidence 97 67778999999999999999999988888 478888887652 44444332 3578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
+||||||.++|.+++++|+++|++|++++|+||+|.++.+++. +.++..+++..+++++++||||.||+||+|+||+++
T Consensus 167 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~ 246 (387)
T PRK07777 167 SPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACG 246 (387)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEec
Confidence 9999999999999999999999999999999999999887543 345555554457899999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ .+.+...........+.+.|.++..++.+ ...+++++++.++++++.+.+.|++.++++.++++++|
T Consensus 247 ~~~l--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~ 317 (387)
T PRK07777 247 PAPL--------IAAVRAAKQYLTYVGGAPFQPAVAHALDH-EDAWVAALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYF 317 (387)
T ss_pred CHHH--------HHHHHHHHhhcccCCCCHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCcceE
Confidence 9887 45555555444444677788888888864 34678899999999999999999998888888888999
Q ss_pred EEEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCC---CCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 381 VWVQFPG---SSSWDVFAEILEKTHILTIPGSGFGP---GGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+|++++. .++.++++.+++++||.|.||+.|+. .++++|||+++.+++++++++++|+++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~ 383 (387)
T PRK07777 318 LCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRAL 383 (387)
T ss_pred EEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 9999752 35678889988888999999999863 235799999988899999999999875
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=392.44 Aligned_cols=359 Identities=19% Similarity=0.311 Sum_probs=275.3
Q ss_pred HHHHHHHHHhcCCC-------CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHh-h
Q 013521 58 ISMRESEHIRKHPD-------ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFY-K 129 (441)
Q Consensus 58 ~~~~~~~~~~~~~~-------~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~-~ 129 (441)
+.+|......++.+ .++|+|++|+|++++|+.+.+ +.+++. . .+|+++.|..++|++|++++. +
T Consensus 79 ~~~r~~~~~~~~~~~~g~~~l~~~i~l~~g~p~~~~~~~v~e-~~~~~~-----~--~~Y~~~~g~~~lreaia~~~~~~ 150 (527)
T PRK09275 79 IEERFEAFLEEHKDVPGIDFLRDAVSYVRDQLGFDADEFVYE-LVDGII-----G--DNYPVPDRMLKHTEKIVKDYLRQ 150 (527)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHhhcCCCCCCCCCHHHHH-HHHHHh-----c--CCCCCCCCCHHHHHHHHHHHHHh
Confidence 44455554444433 257999999999999888888 445443 1 159999999999999999664 3
Q ss_pred h--CCC-C--CCcEEEcCCcHHHHHH-HHH-----hcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEee
Q 013521 130 D--MGI-E--GDEIFISDGAQSDISR-LQM-----LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMN 198 (441)
Q Consensus 130 ~--~~~-~--~~~I~~t~G~~~al~~-l~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~ 198 (441)
. ... . +++|++|+|+++++.. +.. +++|||+|++++|+|+.|...+...|.. .+++.++
T Consensus 151 ~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~----------~~~v~v~ 220 (527)
T PRK09275 151 EMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYD----------LEVVHIN 220 (527)
T ss_pred hccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCC----------eEEEEee
Confidence 2 222 2 3499999999999987 443 6899999999999999999998887621 3566666
Q ss_pred cCCCCCccCCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCccccc
Q 013521 199 CRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 199 ~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~--~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
.+++++|.++.+. .+++|+|+++|||||||.++|.+++++|+++|++ ++++||+||+|.+|.+. +.++...
T Consensus 221 ~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~--~~s~~~~ 298 (527)
T PRK09275 221 ADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD--FRSLFAV 298 (527)
T ss_pred cCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc--ccCHHHh
Confidence 6666667765432 4789999999999999999999999999999965 59999999999998752 4455444
Q ss_pred CCCcceeEEEecCCcccCCccceeEEEEeecc-----ccc--------------------cCCchhHHHH----HHHHhh
Q 013521 272 PGAREVAIEISSFSKFAGFTGVRLGWTVVPEE-----LRY--------------------SNGYPVIKDF----NRIVCT 322 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~-----~~~--------------------~~~~~~~~~~----~~~~~~ 322 (441)
.++++|+++||||.||++|||+||++++++ ++. ....++++++ ..+...
T Consensus 299 --~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~ 376 (527)
T PRK09275 299 --LPYNTILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALN 376 (527)
T ss_pred --CCCCEEEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHh
Confidence 357899999999999999999999999987 210 0111122222 455556
Q ss_pred hcCCCcHHHHHH-----HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC----------
Q 013521 323 CFNGASNIVQAG-----GLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG---------- 387 (441)
Q Consensus 323 ~~~~~~~~~~~a-----~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------- 387 (441)
...+++.+.|.+ +.+++. ....+.+.+++.+++|++.+.+.|.. ++...++.+++|+|++++.
T Consensus 377 ~t~~~s~p~Q~a~al~~~~all~-~~~~~~~~~~~~~~~Rr~~l~~~Lg~-~~~~~~p~g~fY~~~di~~~~~~~~g~~f 454 (527)
T PRK09275 377 HTAGLSTPQQVQMALFSLFALLD-EEDAYKKAMKDIIRRRYKALYEGLGL-PEPEDPNNAAYYTLIDLEEWAEKNYGKEF 454 (527)
T ss_pred hccCCCCHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHcCC-CCcCCCCCeeEEEEEEhHHhhhhccCchh
Confidence 667788888986 234454 34467899999999999999988832 3443567889999999852
Q ss_pred -------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHhhC
Q 013521 388 -------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNFL 441 (441)
Q Consensus 388 -------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~~l 441 (441)
.++.+++.+|++++||.+.||+.|+. +++++|+|+++ +++++.++.++|++++
T Consensus 455 ~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a~~~~~~~~~~~~rl~~~l 515 (527)
T PRK09275 455 ADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGG-PEWSVRVSLANLNEEDYAKIGKAIRKLL 515 (527)
T ss_pred hhhhhccCCHHHHHHHHHhcCCEEEeCchhhCC-CCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence 24678899999999999999999976 46889999985 7899999999998763
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=378.76 Aligned_cols=329 Identities=25% Similarity=0.443 Sum_probs=269.9
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCC-CCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMG-IEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~-~~~~~I~~t~G~~~al 148 (441)
.++++|+.|.|..+.++.+.+++.+... ..+|++..|.+++|+++|+|+.+ ++. +++++|++|+|+++++
T Consensus 27 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i 99 (364)
T PRK07865 27 DGIVDLSVGTPVDPVPPVIQEALAAAAD-------APGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELV 99 (364)
T ss_pred CCEEEcCCCCCCCCCCHHHHHHHHHHHh-------hCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHH
Confidence 4689999999887777888888876542 13798889999999999999976 453 7899999999999999
Q ss_pred HHH-HHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCc
Q 013521 149 SRL-QML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNP 226 (441)
Q Consensus 149 ~~l-~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NP 226 (441)
.++ ..+ +++||.|++++|+|+.+...+...| .+++.++.. .+++. .++++++++|||||
T Consensus 100 ~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~------~~l~~-~~~~~v~~~~p~NP 160 (364)
T PRK07865 100 AWLPTLLGLGPGDVVVIPELAYPTYEVGARLAG------------ATVVRADSL------TELGP-QRPALIWLNSPSNP 160 (364)
T ss_pred HHHHHHHcCCCCCEEEECCCCcccHHHHHHhcC------------CEEEecCCh------hhCCc-ccceEEEEcCCCCC
Confidence 985 555 6899999999999999999998888 466666421 12222 57899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc---CCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI---PGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~---~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
||.++|.+++++|+++|++||++||+||+|.++.+++.+.+.... ....+++|+++||||.+|+||+|+||+++|++
T Consensus 161 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~ 240 (364)
T PRK07865 161 TGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPA 240 (364)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCHH
Confidence 999999999999999999999999999999998876533332221 11246899999999999999999999999988
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWV 383 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 383 (441)
+ ++.+...+.....+++.+.|.++.+++.+ .+++++.++.++++++.+.+.|+++|+.+..+++|+|+|+
T Consensus 241 ~--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 310 (364)
T PRK07865 241 L--------VAELLEVRKHAGMMVPAPVQAAMVAALGD--DAHVREQRERYARRRAVLRPALEAAGFRVDHSEAGLYLWA 310 (364)
T ss_pred H--------HHHHHHHHHhcCCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCccEEEEE
Confidence 7 45666555555556889999999998875 4567888999999999999999998988877788999999
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHH
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLK 438 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~ 438 (441)
+++. +..++.+.+ +++||.+.||..|+...++++||+++.+++++++++++|+
T Consensus 311 ~~~~-~~~~~~~~l-~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 311 TRGE-DCWDTVAWL-AERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred eCCC-CHHHHHHHH-HHCCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence 9852 345565554 5669999999998766678999999778999999999986
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=383.49 Aligned_cols=349 Identities=22% Similarity=0.381 Sum_probs=283.5
Q ss_pred CCCCeEEeCCCCCC----CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCC
Q 013521 70 PDARLIRLGIGDTT----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDG 143 (441)
Q Consensus 70 ~~~~~i~l~~g~~~----~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G 143 (441)
++.++++|+.|+|+ +++++.+.+++.+.+.. ....+|++..|..++|+++|+++.+ +..+++++|++|+|
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G 104 (403)
T TIGR01265 29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRS----GKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSG 104 (403)
T ss_pred cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhc----CCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecC
Confidence 35689999999974 67888999999988754 3345798889999999999999975 55568899999999
Q ss_pred cHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccE
Q 013521 144 AQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDI 217 (441)
Q Consensus 144 ~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~ 217 (441)
+++++.+ +..++++||+|+++.|+|+.+...+...| .+++.++++.++++..+++. .+++++
T Consensus 105 ~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 172 (403)
T TIGR01265 105 CSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSG------------LEVRLYDLLPEKDWEIDLDGLEALADEKTVA 172 (403)
T ss_pred hHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEecCCcccCCccCHHHHHHHhCcCccE
Confidence 9999998 56677999999999999999988888888 58888887654444444332 357899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
+++++||||||.++|.+++++|+++|+++|++||+||+|.++.+++. ..++..++. ..++|+++||||.|++||+|+|
T Consensus 173 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pGlRiG 251 (403)
T TIGR01265 173 IVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFAS-IVPVLSLGGISKRWVVPGWRLG 251 (403)
T ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhcc-CCcEEEEeecccccCCCcceEE
Confidence 99999999999999999999999999999999999999999987653 345666643 3469999999999989999999
Q ss_pred EEEeec--cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee
Q 013521 297 WTVVPE--ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVN 373 (441)
Q Consensus 297 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 373 (441)
|+++++ .++.. .+.+.+..... ...+++.++|.++.+++.+....++++.++.++++++.+.+.|+.+ |+.+.
T Consensus 252 ~~v~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 327 (403)
T TIGR01265 252 WIIIHDPHGIFRD---TVLQGLKNLLQ-RILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCP 327 (403)
T ss_pred EEEEeCchhhhHH---HHHHHHHHHhh-hhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence 999853 33200 01222332222 2345788999999999975445788999999999999999999987 78776
Q ss_pred CCCCceEEEEEcCCC------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 374 GGKNAPYVWVQFPGS------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 374 ~~~~~~~~~~~~~~~------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.|.+|+|+|++++.. ++.+++..+++++||.+.||+.|+ .+++|||+++.+++.+++++++|++++
T Consensus 328 ~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~--~~~~iRis~~~~~~~l~~~l~~l~~~~ 399 (403)
T TIGR01265 328 KPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFG--LPNWVRITITVPESMLEEACSRIKEFC 399 (403)
T ss_pred CCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccC--CCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 778999999999732 567888888888899999999996 368999999888889999999998763
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=382.92 Aligned_cols=342 Identities=25% Similarity=0.364 Sum_probs=282.3
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-hCCCCCCcEEEcCCcHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-DMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~~~I~~t~G~~~al~~ 150 (441)
.++++|+.|.|+.++|+.+.+++.+.. ....+|++..|..++|+++++++.+ +.++++++|++|+|+++++.+
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~ 103 (397)
T PRK07568 30 IKVYHLNIGQPDIKTPEVFFEAIKNYD------EEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILF 103 (397)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHh------cCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHH
Confidence 468999999999888888888887754 2345798889999999999999975 667889999999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccC-CCC---C--CCCccEEEEcCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFP-DLS---T--TSRTDIIFFCSP 223 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~---~--~~~~~~v~i~~p 223 (441)
+..++++||+|++++|+|+.+...++..| .+++.++.+.++++.. +++ . .+++++|++++|
T Consensus 104 ~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p 171 (397)
T PRK07568 104 AMMAICDPGDEILVPEPFYANYNGFATSAG------------VKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNP 171 (397)
T ss_pred HHHHhcCCCCEEEEecCCCccHHHHHHHcC------------CEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECC
Confidence 56678999999999999999988888888 5888998865445432 222 1 367899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|||||.++|.+++++|+++|+++|++||+||+|.+|.+++. +.++..+++..+++++++||||.+|+||+|+||+++++
T Consensus 172 ~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~ 251 (397)
T PRK07568 172 GNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKN 251 (397)
T ss_pred CCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCC
Confidence 99999999999999999999999999999999999887653 44666665446789999999999999999999999864
Q ss_pred -cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceE
Q 013521 303 -ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPY 380 (441)
Q Consensus 303 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 380 (441)
++ ++.+...... ..+++.+.|.++.+++++ ...+++++++.++++++.+.+.|+++ ++.+..+.+|+|
T Consensus 252 ~~~--------~~~~~~~~~~-~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~ 321 (397)
T PRK07568 252 KEL--------IAAAMKLCQA-RLSPPTLEQIGAAALLDT-PESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFY 321 (397)
T ss_pred HHH--------HHHHHHHhhc-cCCCCcHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceE
Confidence 44 3444433332 345788999999988874 35788999999999999999999987 777777788899
Q ss_pred EEEEcCCCChHHHHHHHHHh-----cCeEEeCCCCcCC---CCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFPGSSSWDVFAEILEK-----THILTIPGSGFGP---GGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~---~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|++++..++.++...++++ +||.+.||+.|+. .+++++||+++.+++++++++++|++++
T Consensus 322 ~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l~~~l 390 (397)
T PRK07568 322 IIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILKEAL 390 (397)
T ss_pred EEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence 99999855667888888764 6999999999852 2357999999878899999999998763
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-48 Score=374.30 Aligned_cols=345 Identities=23% Similarity=0.404 Sum_probs=275.8
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hC
Q 013521 54 LFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DM 131 (441)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~ 131 (441)
++.++.+.......+ +.++++|+.|+|+.++++.+.+++.+... ...|++..|..+||+++++|+.+ ++
T Consensus 5 ~~~~~~~~~~~~~~~--~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~~~~~~~~ 75 (357)
T TIGR03539 5 PWDSLAPYKAKAASH--PDGIVDLSVGTPVDPVPPLIRAALAAAAD-------APGYPQTWGTPELREAIVDWLERRRGV 75 (357)
T ss_pred hHHHHHHHHHHhhhC--CCCeEEccCCCCCCCCCHHHHHHHHHHHh-------hCCCCcccCCHHHHHHHHHHHHHhcCC
Confidence 344454444443322 35689999999888888888888876542 24698889999999999999975 55
Q ss_pred C-CCCCcEEEcCCcHHHHHHH-HHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC
Q 013521 132 G-IEGDEIFISDGAQSDISRL-QML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD 208 (441)
Q Consensus 132 ~-~~~~~I~~t~G~~~al~~l-~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~ 208 (441)
. +++++|++|+|+++++..+ ..+ +++||.|++++|+|+++...+...| .+++.++. . ..
T Consensus 76 ~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~--~----~~ 137 (357)
T TIGR03539 76 PGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAG------------ATPVAADD--P----TE 137 (357)
T ss_pred CCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcC------------CEEeccCC--h----hh
Confidence 4 8899999999999999985 455 6999999999999999998888888 46666531 1 11
Q ss_pred CCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc---CCCcceeEEEecCC
Q 013521 209 LSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI---PGAREVAIEISSFS 285 (441)
Q Consensus 209 ~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~---~~~~~~~i~i~S~S 285 (441)
+. ..++++|++++||||||.++|.+++++|+++|++||++||+||+|.++.+++.+.+.... +...+++|+++|||
T Consensus 138 l~-~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S 216 (357)
T TIGR03539 138 LD-PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLS 216 (357)
T ss_pred cC-ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccc
Confidence 22 257899999999999999999999999999999999999999999988876533232221 12246799999999
Q ss_pred cccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 286 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
|.++++|+|+||+++|+++ ++.+.+.......+++.+.|.++.+++.+ ..++++.++.++++++.+.+.|
T Consensus 217 K~~~~~G~R~G~~i~~~~~--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L 286 (357)
T TIGR03539 217 KRSNLAGYRAGFVAGDPAL--------VAELLTVRKHAGLMVPAPVQAAMVAALGD--DGHVAEQKARYAARRAQLKPAL 286 (357)
T ss_pred cccCCCceeEEEEecCHHH--------HHHHHHHHhhcccCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877 45566555555556889999999999874 3567888999999999999999
Q ss_pred HhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHH
Q 013521 366 QSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLK 438 (441)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~ 438 (441)
++.|+.+.++.+|+|+|++++. +..++...+ +++||.+.||..|+..++++|||+++.+.+++++++++|+
T Consensus 287 ~~~g~~~~~p~~~~~~~~~~~~-~~~~~~~~l-~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l~ 357 (357)
T TIGR03539 287 EKAGFRIDHSEAGLYLWATRGE-DAWDTVDRL-AELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARLT 357 (357)
T ss_pred HHcCCCCcCCCccEEEEEECCC-CHHHHHHHH-HhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhhC
Confidence 9888888878889999999863 445566555 5669999999988766678999999888899999999874
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=392.00 Aligned_cols=345 Identities=21% Similarity=0.321 Sum_probs=271.4
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~ 149 (441)
+++|+|+.+.+.+| ..++++..+.+.... .....+|++..|..+||++||+|+.+ ++.+++++|++|+|+++++.
T Consensus 129 p~~i~~~~~~~~fp--~~~i~~a~~~l~~~~-~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~ 205 (534)
T PLN02231 129 PSLLDKSETHGLFS--ADAIERAWQILDQIP-GRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVH 205 (534)
T ss_pred CccCCCCCccccCC--HHHHHHHHHHHHhcC-CccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHH
Confidence 46888887666554 355555555555321 13467899999999999999999975 66789999999999999999
Q ss_pred HH-HHhc-CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC-----------CCcc
Q 013521 150 RL-QMLL-GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT-----------SRTD 216 (441)
Q Consensus 150 ~l-~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-----------~~~~ 216 (441)
++ ..++ .+||.|+++.|+|+.|...+...| .+++.++++++++|.++++.. .++|
T Consensus 206 ~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g------------~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k 273 (534)
T PLN02231 206 MMMQLLIRSEKDGILCPIPQYPLYSASIALHG------------GTLVPYYLDEATGWGLEISELKKQLEDARSKGITVR 273 (534)
T ss_pred HHHHHhccCCCCEEEEeCCCChhHHHHHHHcC------------CEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeE
Confidence 85 5566 479999999999999999999999 589999998766676664321 1689
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccccCC------CcceeEEEecCCccc
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYEIPG------AREVAIEISSFSKFA 288 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~~~~------~~~~~i~i~S~SK~~ 288 (441)
+++++|||||||.++|.+++++|+++|++||++||+||+|.++.+++ .+.++..+.. ...++++++||||.+
T Consensus 274 ~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~ 353 (534)
T PLN02231 274 ALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGY 353 (534)
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCccc
Confidence 99999999999999999999999999999999999999999998853 2445554421 123689999999975
Q ss_pred -CCccceeEEEEee---ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC-----cH----HHHHHHHHHHH
Q 013521 289 -GFTGVRLGWTVVP---EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD-----GF----QALRTVIDYYK 355 (441)
Q Consensus 289 -~~~G~r~G~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~----~~~~~~~~~~~ 355 (441)
|+||+|+||++++ +++ ++.+...... ..+++.+.|.++..+++.. .+ ++.+.+++.|+
T Consensus 354 ~g~pGlRiGy~~~~~~~~~l--------~~~l~k~~~~-~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~ 424 (534)
T PLN02231 354 YGECGKRGGYMEVTGFTSDV--------REQIYKVASV-NLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLA 424 (534)
T ss_pred ccCCccceEEEEEecCCHHH--------HHHHHHHHhh-hcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 7899999999874 444 4555554442 3456778898888888632 23 23456689999
Q ss_pred HHHHHHHHHHHhC-CCeeeCCCCceEEEEEc--CCC-----------ChHHHHHHHHHhcCeEEeCCCCcCC-CCCCeEE
Q 013521 356 ENAKIIVDAFQSL-GLKVNGGKNAPYVWVQF--PGS-----------SSWDVFAEILEKTHILTIPGSGFGP-GGNEHIR 420 (441)
Q Consensus 356 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~iR 420 (441)
++++.+.+.|+++ |+.+.++++|+|+|+++ +.. .+..++.++++++||.+.||+.|+. .+..++|
T Consensus 425 ~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~R 504 (534)
T PLN02231 425 RRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFR 504 (534)
T ss_pred HHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEE
Confidence 9999999999988 89999889999999655 321 1333567788888999999999985 3456899
Q ss_pred EEeecCHHHHHHHHHHHHhh
Q 013521 421 VSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 421 ls~~~~~~~~~~~l~~l~~~ 440 (441)
+++..+++++++++++|+++
T Consensus 505 it~~~~~e~l~eal~RL~~~ 524 (534)
T PLN02231 505 CTILPQEDKIPAIVSRLTEF 524 (534)
T ss_pred EEeCCCHHHHHHHHHHHHHH
Confidence 99988899999999999875
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=348.19 Aligned_cols=349 Identities=21% Similarity=0.345 Sum_probs=299.1
Q ss_pred CCeEEeCCCCCC----CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcH
Q 013521 72 ARLIRLGIGDTT----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQ 145 (441)
Q Consensus 72 ~~~i~l~~g~~~----~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~ 145 (441)
+.+|.|+.|+|. +++.+...+|+.++++. ....+|+|..|....|+++|+|+++ ...+++++|++|+|++
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~S----gk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~ 136 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRS----GKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS 136 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHhc----CCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccch
Confidence 479999999985 46778889999999975 6678999999999999999999876 4457899999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEE
Q 013521 146 SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIF 219 (441)
Q Consensus 146 ~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~ 219 (441)
+||.+ +..+.+||..|+++.|+|+-|...+...| +++..+++-++.+|..|+.. .++|.+++
T Consensus 137 qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~------------lEVR~ydlLPe~~weIDL~~veal~DENT~Aiv 204 (447)
T KOG0259|consen 137 QAIELAISSLANPGANILLPRPGFPLYDTRAIYSG------------LEVRYYDLLPEKDWEIDLDGVEALADENTVAIV 204 (447)
T ss_pred HHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcC------------ceeEeecccCcccceechHHHHHhhccCeeEEE
Confidence 99998 78888999999999999999998888888 79999999999999888653 47999999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++||+||+|.++|.+.+++|+++|++++++||.||+|.++.|++. ..++..+... --+|.++|.||.|=+||||+||+
T Consensus 205 viNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssi-VPVitlggisKrW~VPGWRlGWi 283 (447)
T KOG0259|consen 205 VINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSI-VPVITLGGISKRWIVPGWRLGWI 283 (447)
T ss_pred EeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhcccc-CceEeecccccccccCCceeeeE
Confidence 999999999999999999999999999999999999999999875 4566666432 23799999999998999999999
Q ss_pred EeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eeCCC
Q 013521 299 VVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK-VNGGK 376 (441)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~ 376 (441)
+..+..-.....+..+.+..+.. ...+++.+.|.|.-.+|+.-..+...+..+.++.+.++.++.|++. ++. ...|+
T Consensus 284 ~~hD~~gvf~~~~~~q~~~~~~~-~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPe 362 (447)
T KOG0259|consen 284 ALHDPRGVFRDTKVVQGIKNFLD-IIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPE 362 (447)
T ss_pred EEecccccccchHHHHHHHHHHh-ccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCC
Confidence 98765522233333334443333 3445889999999999986666788999999999999999999998 777 56778
Q ss_pred CceEEEEEcC------CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 377 NAPYVWVQFP------GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 377 ~~~~~~~~~~------~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+++|+|+++. -.++.+|+.+|.+|+.+.+.||..|+. ++|+|+++....+.++++++||+++
T Consensus 363 g~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~--~nw~Ri~i~~~~~~leea~~Rik~F 430 (447)
T KOG0259|consen 363 GCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGL--KNWLRIVITVEEEMLEEAFSRIKEF 430 (447)
T ss_pred cceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccC--CCeEEEEEccChHHHHHHHHHHHHH
Confidence 9999999986 146789999999999999999999985 7899999998999999999999975
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=380.85 Aligned_cols=343 Identities=25% Similarity=0.414 Sum_probs=289.8
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
+.++++|+.|+|+.++++.+.+++.+.+.. ...+|++..|..+||+++|+++.+ +.++++++|++|+|+++++
T Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~ 104 (393)
T PRK05764 30 GRDVISLGAGEPDFDTPEHIKEAAIEALDD-----GKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQAL 104 (393)
T ss_pred cCCEEEeCCCCCCCCCCHHHHHHHHHHHhc-----CCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHH
Confidence 357999999999988889999999888763 334698889999999999999965 4567899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||.|++++|+|+.+..+++..| .+++.++.++++++.++++. .++++++++++
T Consensus 105 ~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 172 (393)
T PRK05764 105 YNAFMALLDPGDEVIIPAPYWVSYPEMVKLAG------------GVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNS 172 (393)
T ss_pred HHHHHHhcCCCCEEEecCCCCcchHHHHHHcC------------CEEEEEecCcccCCcCCHHHHHHhhCccceEEEEEC
Confidence 87 56778999999999999999999999888 58889998765566554332 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCccccc-CCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEI-PGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~-~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++.++ .+..+++++++||||.+|++|+|+||+++
T Consensus 173 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~ 252 (393)
T PRK05764 173 PSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAG 252 (393)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEec
Confidence 999999999999999999999999999999999999887542 3455554 23456899999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCce
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAP 379 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 379 (441)
++++ .+.+.........+++.+.|.++.+++.. ...+++++++.++++++.+.+.|+++ |+.+.++.+++
T Consensus 253 ~~~~--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~ 323 (393)
T PRK05764 253 PKEL--------IKAMSKLQSHSTSNPTSIAQYAAVAALNG-PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAF 323 (393)
T ss_pred CHHH--------HHHHHHHHhhcccCCChHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcce
Confidence 8877 45666666555666889999999999873 34778899999999999999999998 88888878889
Q ss_pred EEEEEcCCC------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 380 YVWVQFPGS------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 380 ~~~~~~~~~------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|+|++++.. ++.++...+++++||.+.||..|+. +++|||+++.+++++++++++|.+++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~vRis~~~~~~~~~~~i~~l~~~~ 389 (393)
T PRK05764 324 YVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGA--PGYVRLSYATSLEDLEEGLERIERFL 389 (393)
T ss_pred EEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCC--CCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 999999742 1367888888888999999998864 78999999889999999999998763
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=369.22 Aligned_cols=329 Identities=19% Similarity=0.340 Sum_probs=265.9
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQ 152 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~ 152 (441)
++++|+.|.++.++|+.+.+++.+.+.. ..+|+ +.+..+||+++|+|+ ++++++|++|+|+++++.++.
T Consensus 20 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~------~~~Y~-~~~~~~lr~~ia~~~----~~~~~~i~it~Ga~~~l~~~~ 88 (354)
T PRK06358 20 MILDFSANINPLGVPESLKQAITENLDK------LVEYP-DPDYLELRKRIASFE----QLDLENVILGNGATELIFNIV 88 (354)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHh------hhcCC-CccHHHHHHHHHHHh----CCChhhEEECCCHHHHHHHHH
Confidence 4799999998888889999999987642 34685 457899999999997 789999999999999999854
Q ss_pred HhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC--C-CC-CCCccEEEEcCCCCccc
Q 013521 153 MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD--L-ST-TSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 153 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~--~-~~-~~~~~~v~i~~p~NPtG 228 (441)
..+.+ +.|++++|+|+.+...++..| .+++.++.+.++++..| + +. ..++++++++|||||||
T Consensus 89 ~~~~~-~~v~i~~P~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~P~NPtG 155 (354)
T PRK06358 89 KVTKP-KKVLILAPTFAEYERALKAFD------------AEIEYAELTEETNFAANEIVLEEIKEEIDLVFLCNPNNPTG 155 (354)
T ss_pred HHhCC-CcEEEecCChHHHHHHHHHcC------------CeeEEEeCccccCCCccHHHHHhhccCCCEEEEeCCCCCCC
Confidence 44555 689999999999999998888 58889988765555554 1 11 35689999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccC
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN 308 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~ 308 (441)
.++|.+++++|+++|++|+++||+||+|.+|.+++.+.+.....+..+++|+++||||.+|+||+|+||++++++.+
T Consensus 156 ~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~--- 232 (354)
T PRK06358 156 QLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNL--- 232 (354)
T ss_pred CccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHH---
Confidence 99999999999999999999999999999998875444433322235789999999999999999999999865432
Q ss_pred CchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcCC
Q 013521 309 GYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPG 387 (441)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 387 (441)
++.+..... ..+++.+.|.++.+++.+ ..++++.++.++++++.+.+.|+++ ++.+.++ +|+|+|++++.
T Consensus 233 ----~~~~~~~~~--~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~g~f~~~~~~~ 303 (354)
T PRK06358 233 ----AEKLLQMRE--PWSINTFADLAGQTLLDD--KEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKP-SVNFIFFKLEK 303 (354)
T ss_pred ----HHHHHHhCC--CCcchHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-cceEEEEEcCc
Confidence 345555433 345788999999999863 3567888999999999999999987 7777765 67799999973
Q ss_pred CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 388 SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 388 ~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
..++.+.+++ +||.+.||+.|+..++++|||++ .++++.+++++.|++++
T Consensus 304 --~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRls~-~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 304 --PIDLRKELLK-KGILIRSCSNYRGLDENYYRVAV-KSREDNKKLLKALEVIL 353 (354)
T ss_pred --hHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEe-CCHHHHHHHHHHHHHHh
Confidence 4678887776 59999999999655678999997 45677788888887653
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=376.41 Aligned_cols=350 Identities=20% Similarity=0.291 Sum_probs=260.2
Q ss_pred CCeEEeCCCCCCC-CCc-HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHH
Q 013521 72 ARLIRLGIGDTTQ-PIP-DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 72 ~~~i~l~~g~~~~-~~~-~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~a 147 (441)
.++|+|+.|.|+. +++ +.+.+++.+.+..........+|++..|..+||++||+|+.+ ++++++++|++|+|++++
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~a 109 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSA 109 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHH
Confidence 4689999999874 333 345566666554311113446799999999999999999975 667899999999999999
Q ss_pred HHHH-HHhcC-----CCCEEEE-eCCCchhhHhHHHHhccccccccccCccceeEEeecCCCC-CccCCCC---CCCCcc
Q 013521 148 ISRL-QMLLG-----SNVTVAV-QDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDLS---TTSRTD 216 (441)
Q Consensus 148 l~~l-~~l~~-----~gd~Vlv-~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~---~~~~~~ 216 (441)
+.++ ..+++ +||.|++ ++|+|++|...+...+.... .....++++.++ ++..+++ ...+++
T Consensus 110 l~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 181 (416)
T PRK09440 110 FFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVS--------YRPNIELLPEGQFKYHVDFEHLHIDEDTG 181 (416)
T ss_pred HHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceee--------cccccccccccccccCCCHHHcccCCCce
Confidence 9985 55664 6899999 79999999876554442100 112222332211 2233322 235789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
++++||||||||.++|.+++++|+++|++||++||+||+|.++.......+.. +...+++|+++||||. ++||+|+|
T Consensus 182 ~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~--~~~~~~vI~~~SfSK~-~~pGlRiG 258 (416)
T PRK09440 182 AICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEAT--PLWNPNIILCMSLSKL-GLPGVRCG 258 (416)
T ss_pred EEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcC--ccccCCeEEEeccccc-CCCcceEE
Confidence 99999999999999999999999999999999999999998643211001111 1124689999999996 78999999
Q ss_pred EEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHH-HHHHHHHHHHHHHHHHHhC----CC
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRT-VIDYYKENAKIIVDAFQSL----GL 370 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~~----g~ 370 (441)
|+++++++ ++.+.........+++.+.|.++.+++.+..+ .+..+ +++.|+++++.+.+.|.+. ++
T Consensus 259 ~~i~~~~l--------~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~ 330 (416)
T PRK09440 259 IVIADEEI--------IEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPC 330 (416)
T ss_pred EEeCCHHH--------HHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCe
Confidence 99999887 46666666655566899999999999987655 45544 6888999999999988764 45
Q ss_pred eeeCCCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCC-------CCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 371 KVNGGKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPG-------GNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 371 ~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~-------~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.+..+++|+|+|++++. .++.++...+ +++||.+.||+.|+.. +.+++||+++.+++++++++++|++++
T Consensus 331 ~~~~p~gg~fiw~~~~~~~~~~~~~~~~l-~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~ 409 (416)
T PRK09440 331 LIHKPEGAIFLWLWFKDLPITTEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEEV 409 (416)
T ss_pred EEecCCCceEEEEECCCCCCCHHHHHHHH-HHCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHHH
Confidence 66677789999999974 3566677665 5669999999998642 136999999778999999999998763
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=370.72 Aligned_cols=326 Identities=18% Similarity=0.241 Sum_probs=260.1
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL 151 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l 151 (441)
.++++|+.|++++++|+.+.+++.+.+.. ..+|++. +..+||++||+|+ ++++++|++|+|+++++.++
T Consensus 22 ~~~i~l~~~~n~~~~~~~~~~a~~~~~~~------~~~Y~~~-~~~~Lr~aia~~~----~v~~~~I~it~G~~~~i~~~ 90 (360)
T PRK07392 22 DAILDFSASINPLGPPESVIAAIQSALSA------LRHYPDP-DYRELRLALAQHH----QLPPEWILPGNGAAELLTWA 90 (360)
T ss_pred ccEEEeCCcCCCCCCCHHHHHHHHHHHHH------hhcCCCc-CHHHHHHHHHHHh----CcChhhEEECCCHHHHHHHH
Confidence 36899999999999999999999887652 4568654 5689999999997 78999999999999999986
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCc---cCCCCC----CCCccEEEEcCCC
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF---FPDLST----TSRTDIIFFCSPN 224 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~---~~~~~~----~~~~~~v~i~~p~ 224 (441)
...+.+||.|++++|+|+.+...++..| .+++.++++.++++ ..+++. ..+++++++||||
T Consensus 91 ~~~l~~g~~vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~ 158 (360)
T PRK07392 91 GRELAQLRAVYLITPAFGDYRRALRAFG------------ATVKELPLPLDQPSPGLTLRLQTLPPQLTPNDGLLLNNPH 158 (360)
T ss_pred HHHhCCCCeEEEECCCcHHHHHHHHHcC------------CeEEEEecccccCCcccccCHHHHHHhccCCCEEEEeCCC
Confidence 5445678999999999999999999999 58999999766554 123222 3578899999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.+++.+ +|.++++++++ +|+||+|.+|.+++.+.++....+..+++|+++||||.||+||+|+||+++++++
T Consensus 159 NPTG~~~~~~---~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~ 234 (360)
T PRK07392 159 NPTGKLWSRE---AILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDR 234 (360)
T ss_pred CCCCCCcCHH---HHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHH
Confidence 9999999955 55666678885 5669999999876543343332223468999999999999999999999999877
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWV 383 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 383 (441)
+ +.+.... ...+++.++|.++.+++++. .+.+..++.++++++.+.+.|+++ |+.+.+ .+++|+|+
T Consensus 235 ~--------~~~~~~~--~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~fl~~ 301 (360)
T PRK07392 235 L--------QRWQQWR--DPWPVNGLAAAAAIAALADR--DFQQQTWAWLPPAREALFQGLASLPGLTPLP-SAANFLLV 301 (360)
T ss_pred H--------HHHHhhC--CCCCCCHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEECC-CCCCEEEE
Confidence 3 4454333 23458999999999999753 455677788999999999999887 777765 68999999
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecC--HHHHHHHHHHHH
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGH--REYISEACRRLK 438 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~--~~~~~~~l~~l~ 438 (441)
+++. ++.++...+++++||.+.||..|+..++++|||+++.. .+.+.++++++.
T Consensus 302 ~~~~-~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~l~~al~~~~ 357 (360)
T PRK07392 302 QSQG-SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEAENQRLLEALAAIL 357 (360)
T ss_pred EcCC-CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 9874 56778888888789999999999766678999999764 356777777664
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=369.99 Aligned_cols=322 Identities=22% Similarity=0.356 Sum_probs=262.2
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.++++|+.|++++++|+.+.+++.+.+.. ..+|+ +.|..+||+++|+|+ ++++++|++|+|+++++.+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~-~~~~~~lr~~ia~~~----~~~~~~I~it~G~~~al~~ 97 (357)
T PRK14809 29 PDDLVKLSSNENPHGPSPAAVEAIREAAER------VHSYP-KASHADLTAALADRW----DVSPEQVWLANGGDGALDY 97 (357)
T ss_pred ccceeEecCCCCCCCCCHHHHHHHHHHHhh------hhcCC-CCCHHHHHHHHHHHh----CCCcceEEECCCHHHHHHH
Confidence 357999999999998888889999887642 34685 578999999999997 7899999999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC----CCCccEEEEcCCCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST----TSRTDIIFFCSPNN 225 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~----~~~~~~v~i~~p~N 225 (441)
+..++++||.|++++|+|+.+...+...| .+++.++++.++++..+.+. ..+++++++|||||
T Consensus 98 ~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~i~l~~p~N 165 (357)
T PRK14809 98 LARAMLDPGDTVLVPDPGFAYYGMSARYHH------------GEVREYPVSKADDFEQTADTVLDAYDGERIVYLTSPHN 165 (357)
T ss_pred HHHHhcCCCCEEEEeCCChHHHHHHHHHcC------------CeEEEEecccCcCCCcCHHHHHHhhcCCcEEEEeCCCC
Confidence 56678999999999999998887777777 57888888655566554332 24689999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~ 305 (441)
|||.++|.+++++|+++|++ +++||+||+|.+|.++.. .+..++ ..+++++++||||.+|+||+|+||+++|+++
T Consensus 166 PTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~--~~~~~~-~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~- 240 (357)
T PRK14809 166 PTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERPS--AVALVE-ERDDVAVLRTFSKAYGLAGLRLGYAVVPEEW- 240 (357)
T ss_pred CCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCch--hHHHHh-hCCCEEEEecchhHhcCcchhheeeecCHHH-
Confidence 99999999999999999875 789999999999876432 122222 3468999999999999999999999999887
Q ss_pred ccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEc
Q 013521 306 YSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQF 385 (441)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 385 (441)
++.+.+... ..+++.++|.++.+++.+ ..++++.++.++++++.+.+.|+... . +++|+|+|+++
T Consensus 241 -------~~~~~~~~~--~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~---~-~~~g~f~~~~~ 305 (357)
T PRK14809 241 -------ADAYARVNT--PFAASELACRAGLAALDD--DEHVERTVETARWAREYIREELDAPT---W-ESAGNFVLAEV 305 (357)
T ss_pred -------HHHHHHhCC--CCCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHhcCcc---C-CCCCCEEEEEC
Confidence 455554432 345788999999998874 46788899999999999999997542 2 46899999998
Q ss_pred CCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 386 PGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 386 ~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+ ++.++.+.+ +++||.|.||+.|+. +++|||+++ +++++++++++|++++
T Consensus 306 ~--~~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRls~~-~~~~~~~~l~~L~~~l 355 (357)
T PRK14809 306 G--DASAVAEAA-QERGVIVRDCTSFGL--PECIRITCG-TREETERAVEVLNEVL 355 (357)
T ss_pred C--CHHHHHHHH-HHCCEEEEECccCCC--CCeEEEecC-CHHHHHHHHHHHHHHh
Confidence 6 456777665 566999999999963 579999975 5789999999998864
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=376.32 Aligned_cols=344 Identities=20% Similarity=0.300 Sum_probs=260.4
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHH-HHhhhC--C-CCCC--cEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIAD-KFYKDM--G-IEGD--EIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~-~l~~~~--~-~~~~--~I~~t~G~~~ 146 (441)
++|+|+.|+|++++++. +.++.+.+.. . +|+++.|..++++++++ |+.+.. . .+++ +|++|+|+++
T Consensus 95 ~~i~l~~g~p~~~~~~~-~~~~~~~~~~----~---~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~ 166 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAF-LYEMCDGIIG----D---NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTA 166 (521)
T ss_pred HHHhhcCCCCCCCCCHH-HHHHHHHhhc----C---CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence 57999999999986554 4566665531 1 58777888888888885 544422 2 2344 8999999999
Q ss_pred HHHH-HHH-----hcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCC-----ccCCCCC----
Q 013521 147 DISR-LQM-----LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENN-----FFPDLST---- 211 (441)
Q Consensus 147 al~~-l~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~-----~~~~~~~---- 211 (441)
++.. +.. +++|||+|++++|+|+.|...+...+.. .+++.++.+.+++ |..+.+.
T Consensus 167 al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g----------~~vv~i~~~~~~~~g~~~~~~d~~~l~~~ 236 (521)
T TIGR03801 167 AMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYD----------FEVVRIKADEMTEDGTHTWQYPDKELEKL 236 (521)
T ss_pred HHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCC----------cEEEEeecccccccccccCCCCHHHHHHh
Confidence 9987 444 6899999999999999999988876421 4677777764333 6555332
Q ss_pred -CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc--CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCccc
Q 013521 212 -TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKAN--GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFA 288 (441)
Q Consensus 212 -~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~--~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (441)
.+++|+++++|||||||.++|.+++++|+++|++| +++||+||+|.+|.++ +.++.+. .++++|+++||||.|
T Consensus 237 ~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~--~~sl~~~--~~~~vI~v~SfSK~f 312 (521)
T TIGR03801 237 RDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD--FRSLFAE--LPYNTIGVYSFSKYF 312 (521)
T ss_pred cCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc--ccchhhh--CCCCEEEEEcchhhc
Confidence 36899999999999999999999999999999987 9999999999988753 4455544 457899999999999
Q ss_pred CCccceeEEEEeeccccc-----c--------------------CCchhH----HHHHHHHhhhcCCCcHHHHH-----H
Q 013521 289 GFTGVRLGWTVVPEELRY-----S--------------------NGYPVI----KDFNRIVCTCFNGASNIVQA-----G 334 (441)
Q Consensus 289 ~~~G~r~G~l~~~~~~~~-----~--------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~-----a 334 (441)
|++|||+||++++++.+. . +..+.+ ...+.+......+++.+.|. +
T Consensus 313 g~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a 392 (521)
T TIGR03801 313 GATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFS 392 (521)
T ss_pred cCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 999999999999876220 0 001111 12233444455567788776 3
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC-----------------CChHHHHHHH
Q 013521 335 GLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG-----------------SSSWDVFAEI 397 (441)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l 397 (441)
+.+++. ....+.+.+++.+++|++.+.+.|. ..+...++.+++|+|++++. .++.+++.+|
T Consensus 393 ~~all~-~~~~y~~~~~~~~~~R~~~l~~~Lg-~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L 470 (521)
T TIGR03801 393 LFALMD-KENAYKAETKDICRRREKLLFRGLG-LPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRL 470 (521)
T ss_pred HHHHhc-cchhHHHHHHHHHHHHHHHHHHhcC-CCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHH
Confidence 444554 3446789999999999999999982 22333456789999999972 1467899999
Q ss_pred HHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHhhC
Q 013521 398 LEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNFL 441 (441)
Q Consensus 398 l~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~~l 441 (441)
++++||.+.||..|+.. ++++|+|+++ +++++.++.++|++++
T Consensus 471 ~~e~gV~v~PG~~Fg~~-~~~vRisla~l~~~~~~~~~~rl~~~~ 514 (521)
T TIGR03801 471 AEETGIVLLPGGGFGGP-EWSVRVSLANLNEYDYAEIGRAIRKIL 514 (521)
T ss_pred HHhCCEEEeCchhcCCC-CCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999863 6789999975 8889999999998763
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=376.34 Aligned_cols=340 Identities=16% Similarity=0.205 Sum_probs=263.6
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh--CCCCCCcEE--EcCCcHH
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD--MGIEGDEIF--ISDGAQS 146 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~--~~~~~~~I~--~t~G~~~ 146 (441)
+++++|+.|.| +.+++....+++.+++..........+|++..|.++||+++|+|+.+. ..+++++|+ .|+|+++
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~ 108 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTG 108 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcch
Confidence 47899999986 465666666777776644322245578999999999999999998652 346889999 5999999
Q ss_pred HHHHH-H---HhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--------CCC
Q 013521 147 DISRL-Q---MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--------TSR 214 (441)
Q Consensus 147 al~~l-~---~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--------~~~ 214 (441)
++.++ . .+++|||+|++++|+|+.|...++..| .+++.+++.+++++..+.+. .++
T Consensus 109 al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G------------~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~ 176 (404)
T PTZ00376 109 ALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAG------------LNVKEYRYYDPKTKGLDFDGMLEDLRTAPNG 176 (404)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CceeeccccCcccCCcCHHHHHHHHHhCCCC
Confidence 98864 2 567999999999999999999999999 58999998543334333221 134
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC---CCCcccccCCCcceeEEEecCCcccCCc
Q 013521 215 TDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP---SPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 215 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~---~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++++++|||||||.++|.+++++|+++|++|+++||+||+|.+|.+++ .+.++..+....+++|+++||||.|++|
T Consensus 177 ~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~ 256 (404)
T PTZ00376 177 SVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLY 256 (404)
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccccc
Confidence 5666778999999999999999999999999999999999999998854 1223444433346899999999999999
Q ss_pred cceeEEE---EeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHHHHH
Q 013521 292 GVRLGWT---VVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-----QALRTVIDYYKENAKIIVD 363 (441)
Q Consensus 292 G~r~G~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~ 363 (441)
|+|+||+ +++++++. .+.+.+.......+.+++.++|.++.+++++..+ .++++.++.++++++.+.+
T Consensus 257 GlRvG~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 332 (404)
T PTZ00376 257 GERIGALHIVCANKEEAA----NVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYD 332 (404)
T ss_pred ccccceEEEEeCCHHHHH----HHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 45665420 0122333333444555678899999999986432 3467778899999999999
Q ss_pred HHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-cCHHHHHHHHHHHH
Q 013521 364 AFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF-GHREYISEACRRLK 438 (441)
Q Consensus 364 ~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~~~~~~l~~l~ 438 (441)
.|++++ +.+..+.+|+|+|++++ .+++.+|++++||.+.|| + |++++ .+++++++++++|+
T Consensus 333 ~L~~~~~~~~~~~~~p~gg~f~~~~~~----~~~~~~L~~~~~v~v~p~--------~--Ris~~~~~~~~~~~~~~~l~ 398 (404)
T PTZ00376 333 ELKALGSPGDWEHIINQIGMFSFTGLT----KEQVERLIEKYHIYLLDN--------G--RISVAGLTSKNVDYVAEAIH 398 (404)
T ss_pred HHHhcCCCCcccccccCceEEEecCCC----HHHHHHHHHhCCEeecCC--------C--eEEEeccCHHhHHHHHHHHH
Confidence 999874 44556789999999884 578899999989999997 1 99996 58999999999998
Q ss_pred hhC
Q 013521 439 NFL 441 (441)
Q Consensus 439 ~~l 441 (441)
+++
T Consensus 399 ~~~ 401 (404)
T PTZ00376 399 DVV 401 (404)
T ss_pred HHH
Confidence 763
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=372.24 Aligned_cols=336 Identities=18% Similarity=0.212 Sum_probs=258.8
Q ss_pred CCeEEeCCCC---CCCCCc--HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh--CCCCCCcE--EEcC
Q 013521 72 ARLIRLGIGD---TTQPIP--DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD--MGIEGDEI--FISD 142 (441)
Q Consensus 72 ~~~i~l~~g~---~~~~~~--~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~--~~~~~~~I--~~t~ 142 (441)
+++|+|+.|. ++..+| +.+.+++.+.+.. ....+|++..|.++||+++++|+.+. ..+++++| ++|+
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~----~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~ 101 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLET----ETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTP 101 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHHHhccc----ccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecC
Confidence 4689999996 333344 6677777775542 34557999999999999999999753 22578887 9999
Q ss_pred CcHHHHHHH-HHh--cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-------C
Q 013521 143 GAQSDISRL-QML--LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-------T 212 (441)
Q Consensus 143 G~~~al~~l-~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-------~ 212 (441)
|+++|+.++ ..+ ++|||+|++++|+|+++...++..| .+++.++...++++.++++. .
T Consensus 102 Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g------------~~~v~v~~~~~~~~~~d~~~l~~~~~~~ 169 (396)
T PRK09257 102 GGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAG------------LEVKTYPYYDAATKGLDFDAMLADLSQA 169 (396)
T ss_pred CccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcC------------CcEEEEeccccccCccCHHHHHHHHHhC
Confidence 999999984 333 5899999999999999999999999 58899987322233334321 1
Q ss_pred -CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC-CC-CCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-PS-PRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~-~~-~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
.+..+++++|||||||.++|.+++++|+++|++||++||+||+|.++.++ +. +.++..+++..+++|+++||||.++
T Consensus 170 ~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~ 249 (396)
T PRK09257 170 PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFG 249 (396)
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCc
Confidence 23445555799999999999999999999999999999999999998865 22 3445455434468999999999999
Q ss_pred CccceeEEEEe--ec-cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTVV--PE-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYYKENAKII 361 (441)
Q Consensus 290 ~~G~r~G~l~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~l 361 (441)
++|+|+||+++ ++ +.+. +....+.......+.+++.+.|.++.+++.+.. .++++++++.|+++++.+
T Consensus 250 ~~GlRiG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l 325 (396)
T PRK09257 250 LYGERVGALSVVAEDAEEAD----RVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLL 325 (396)
T ss_pred cccccceeEEEEeCCHHHHH----HHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999984 22 2210 012333333334555578899998989998643 257888999999999999
Q ss_pred HHHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-cCHHHHHHHHHH
Q 013521 362 VDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF-GHREYISEACRR 436 (441)
Q Consensus 362 ~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~~~~~~l~~ 436 (441)
.+.|++++ +.+..+++|+|+|++++ .+++.++++++||.+.|. + ||+++ .+++++++++++
T Consensus 326 ~~~L~~~~~~~~~~~~~p~gg~~~w~~l~----~~~~~~l~~~~~V~~~p~--------~--ri~~~~~~~~~i~~~~~~ 391 (396)
T PRK09257 326 VEALKAKGPSRDFDFIARQRGMFSYSGLT----PEQVDRLREEFGVYAVGS--------G--RINVAGLNESNIDYVAEA 391 (396)
T ss_pred HHHHHhcCCCCCcccccccceEEEecCCC----HHHHHHHHHcCCEEEcCC--------C--eEEEeeCCHHHHHHHHHH
Confidence 99999874 56677889999999984 367788888999999872 2 99996 589999999999
Q ss_pred HHhhC
Q 013521 437 LKNFL 441 (441)
Q Consensus 437 l~~~l 441 (441)
|++++
T Consensus 392 i~~~~ 396 (396)
T PRK09257 392 IAAVL 396 (396)
T ss_pred HHhhC
Confidence 99875
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=367.25 Aligned_cols=321 Identities=19% Similarity=0.331 Sum_probs=259.1
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
..++|+|+.|++++++|+.+.+++.+.+.. ...| |+.|..+||++||+|+ ++++++|++|+|+++++.+
T Consensus 28 ~~~~i~l~~nen~~~~~~~v~~a~~~~~~~------~~~Y-p~~g~~~Lr~aia~~~----~~~~~~I~vt~Gs~e~i~~ 96 (366)
T PRK01533 28 DHSFVKLASNENPFGCSPRVLDELQKSWLD------HALY-PDGGATTLRQTIANKL----HVKMEQVLCGSGLDEVIQI 96 (366)
T ss_pred CCceEEeCCCCCCCCCCHHHHHHHHHHHHh------cCcC-CCCCHHHHHHHHHHHh----CCCcceEEECCCHHHHHHH
Confidence 357899999999999999999999887643 1246 5679999999999997 7899999999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCc
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNP 226 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NP 226 (441)
+..++++||.|++++|+|+.|...+...| .+++.++++. +.++++ ++. .++++++++||||||
T Consensus 97 ~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g------------~~v~~v~~~~-~~~d~~~l~~~~~~~~~~v~i~~P~NP 163 (366)
T PRK01533 97 ISRAVLKAGDNIVTAGATFPQYRHHAIIEG------------CEVKEVALNN-GVYDLDEISSVVDNDTKIVWICNPNNP 163 (366)
T ss_pred HHHHhcCCCCEEEEcCCcHHHHHHHHHHcC------------CEEEEeecCC-CCcCHHHHHHHhCcCCcEEEEeCCCCC
Confidence 56678999999999999999999999998 5888898853 233222 221 357899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
||.+++.+++++|+++|++++ ++|+||+|.+|.+++...+.....+..+++|+++||||.||+||+|+||+++++++
T Consensus 164 TG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~-- 240 (366)
T PRK01533 164 TGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEEL-- 240 (366)
T ss_pred CCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHH--
Confidence 999999999999999998876 56679999988765322222222123468999999999999999999999999877
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcC
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP 386 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 386 (441)
++.+..... ..+++.++|.++.++|++ ..+.+..++.++++++.+.+.|+.+|+++.++ +|+|+|++++
T Consensus 241 ------~~~l~~~~~--~~~~~~~~q~aa~~~l~~--~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~~~-~~nf~~~~~~ 309 (366)
T PRK01533 241 ------IEKLNVVRL--PFNVSSLAQKAATIAFGD--DEFIEEIVRVNTEGLRQYESFCKENEIPFYQS-QTNFIFLPVE 309 (366)
T ss_pred ------HHHHHHhcC--CCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCC-cCcEEEEeCC
Confidence 456665442 356899999999999974 45667888888899999999998888888764 7899999996
Q ss_pred CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 387 GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 387 ~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+..++...+++ +||.|++ | ++++||++ .++++.+.++++|+++
T Consensus 310 --~~~~~~~~l~~-~GI~Vr~---~----~~~iRis~-~~~~~~~~l~~al~~~ 352 (366)
T PRK01533 310 --NGGEIYEACAH-AGFIIRP---F----PNGVRITV-GTREQNEGVISVLQQH 352 (366)
T ss_pred --CHHHHHHHHHH-CCcEEcc---C----CCceEEeC-CCHHHHHHHHHHHHHH
Confidence 45667676665 6999998 4 46899997 4567778888888764
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=360.71 Aligned_cols=342 Identities=24% Similarity=0.378 Sum_probs=273.3
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
..++++|+.|.|++++|+.+.+++.+.++... ....+|++..|..++|+++|+|+.+ +.++++++|++|+|+++++
T Consensus 32 ~~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al 109 (394)
T PRK06836 32 ADNVFDFSLGNPSVPPPAAVKEALRELAEEED--PGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGAL 109 (394)
T ss_pred CCCeEEecCcCCCCCCCHHHHHHHHHHHhcCC--cCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHH
Confidence 35689999999888888999999988776432 2356898889999999999999975 5567899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||.|++++|+|+.+...++..| .+++.++.+++ ++..++++ .++++++++++
T Consensus 110 ~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g------------~~v~~v~~~~~-~~~~d~~~l~~~~~~~~~~v~~~~ 176 (394)
T PRK06836 110 NVALKAILNPGDEVIVFAPYFVEYRFYVDNHG------------GKLVVVPTDTD-TFQPDLDALEAAITPKTKAVIINS 176 (394)
T ss_pred HHHHHHhcCCCCEEEEcCCCCccHHHHHHHcC------------CEEEEEecCCc-cCcCCHHHHHhhcCcCceEEEEeC
Confidence 97 67778999999999999999998888888 58999998764 23334322 36799999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHH------cCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKA------NGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~------~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
||||||.++|.+++++|+++|++ ||++||+||+|.++.+++. ..++.. ..+++++++||||.+|+||+|+
T Consensus 177 p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~---~~~~~i~~~S~SK~~~~pGlRi 253 (394)
T PRK06836 177 PNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFK---YYDNSIVVYSFSKSLSLPGERI 253 (394)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHH---ccCcEEEEecchhhccCcceee
Confidence 99999999999999999999999 8999999999999887642 223322 2467999999999999999999
Q ss_pred EEEEeeccccccCCchhHHHHHHHHhh-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVCT-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
||++++++... .......+...... ....++.+.|.++..++.+. ..++.++++++.+.+.|+++|+.+..
T Consensus 254 G~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~r~~l~~~L~~~g~~~~~ 325 (394)
T PRK06836 254 GYIAVNPEMED--ADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT------VDVSIYKRNRDLLYDGLTELGFECVK 325 (394)
T ss_pred EEEecCHHHhh--hHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHhCCCEeec
Confidence 99999876521 00001111111111 22357788999888888752 13567888999999999999998888
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+.+|+|+|++++..++.++++.+ +++||.+.||+.|+. .+++||+++.+++++++++++|++++
T Consensus 326 ~~gg~~~~~~~~~~~~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRi~~~~~~~~~~~~i~~l~~~l 389 (394)
T PRK06836 326 PQGAFYLFPKSPEEDDVAFCEKA-KKHNLLLVPGSGFGC--PGYFRLSYCVDTETIERSLPAFEKLA 389 (394)
T ss_pred CCceEEEEEeCCCCCHHHHHHHH-HhCCEEEECchhcCC--CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 88899999999765666777554 566999999999864 57999999888999999999999864
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=358.87 Aligned_cols=323 Identities=19% Similarity=0.300 Sum_probs=257.0
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.++++|+.|++++++|+.+.+++.+.+.. ..+|++..|..++|+++|+|+ ++++++|++|+|+++++.+
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~g~~~lr~aia~~~----~~~~~~I~it~Ga~~al~~ 90 (349)
T PRK07908 21 GPGLLDFAVNVRHDTPPEWLRERLAARLGD------LAAYPSTEDERRARAAVAARH----GRTPDEVLLLAGAAEGFAL 90 (349)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhhH------hhcCCCccchHHHHHHHHHHh----CcChhhEEECCCHHHHHHH
Confidence 467999999999999999999999998753 246877789999999999997 7899999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-CCCccEEEEcCCCCcccc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-TSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~~~~~~v~i~~p~NPtG~ 229 (441)
+.. +++| .++++.|+|+.+...++..| .+++.++++.+ +..+.+. .+++++++++|||||||.
T Consensus 91 ~~~-l~~~-~viv~~P~y~~~~~~~~~~G------------~~i~~v~~~~~--~~~d~~~l~~~~~~i~l~np~NPTG~ 154 (349)
T PRK07908 91 LAR-LRPR-RAAVVHPSFTEPEAALRAAG------------IPVHRVVLDPP--FRLDPAAVPDDADLVVIGNPTNPTSV 154 (349)
T ss_pred HHh-cCCC-eEEEeCCCChHHHHHHHHcC------------CEEEeeccCcc--cCcChhHhccCCCEEEEcCCCCCCCC
Confidence 655 6775 56778999999998888888 58899988754 3333332 357899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~ 309 (441)
++|.++ |.++|+ ++.++|+||+|+++..+ .+.++... ..+++++++||||.||+||+|+||+++++++
T Consensus 155 ~~~~~~---l~~l~~-~~~~iIvDe~y~~~~~~-~~~~l~~~--~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~----- 222 (349)
T PRK07908 155 LHPAEQ---LLALRR-PGRILVVDEAFADAVPG-EPESLAGD--DLPGVLVLRSLTKTWSLAGLRVGYALGAPDV----- 222 (349)
T ss_pred CcCHHH---HHHHHh-cCCEEEEECcchhhccC-Cccccccc--cCCCEEEEeecccccCCccceeeeeecCHHH-----
Confidence 999665 455565 47788899999987543 34455443 2457999999999999999999999998877
Q ss_pred chhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCC
Q 013521 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSS 389 (441)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 389 (441)
++.+..... ....+.+.+.++.+++.+...+++++.++.++++++.+.+.|+++++++.++++|+|+|+++++
T Consensus 223 ---~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~~~~~~~~~-- 295 (349)
T PRK07908 223 ---LARLTRGRA--HWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVDPAAAPFVLVRVPD-- 295 (349)
T ss_pred ---HHHHHhcCC--CCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCCCceEEEEECCc--
Confidence 355554332 2346777787777777644557889999999999999999999888888877899999999974
Q ss_pred hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 390 SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 390 ~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
. +.+..+++++||.+.||+.|+..++++|||++. ++++++++++.|+++
T Consensus 296 ~-~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~-~~~~~~~l~~al~~~ 344 (349)
T PRK07908 296 A-ELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR-PRAEVPVLVQALAEI 344 (349)
T ss_pred H-HHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC-CCccHHHHHHHHHHH
Confidence 3 445555667799999999996555789999984 556667777776654
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=358.80 Aligned_cols=314 Identities=18% Similarity=0.272 Sum_probs=246.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQ 152 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~ 152 (441)
.+++|+.++++++.. .....| |+.-..+||+++|+|+ ++++++|++|+|+++++.++.
T Consensus 17 ~~i~l~~Nenp~~~~-----------------~~~~~Y-p~~~~~~lr~~ia~~~----~~~~~~I~it~Gs~~~l~~~~ 74 (332)
T PRK06425 17 RIIDFSANINDFMDI-----------------GDISIY-PEISYTDIEDQIKIYT----QGLKIKVLIGPGLTHFIYRLL 74 (332)
T ss_pred CEEEeccccCCCcCh-----------------hhcccC-cCcCHHHHHHHHHHHh----CCCcceEEECCCHHHHHHHHH
Confidence 589999999876310 223458 4556899999999996 889999999999999999865
Q ss_pred HhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCC
Q 013521 153 MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 153 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~ 232 (441)
.++++|+ |++++|+|+.|...++..| .+++.+|++.. +...+..+..+++++++||||||||.++|
T Consensus 75 ~~~~~~~-vv~~~P~y~~y~~~~~~~G------------~~v~~vp~~~~-~~~~~~l~~~~~k~v~l~nP~NPTG~~~s 140 (332)
T PRK06425 75 SYINVGN-IIIVEPNFNEYKGYAFTHG------------IRISALPFNLI-NNNPEILNNYNFDLIFIVSPDNPLGNLIS 140 (332)
T ss_pred HHhCCCc-EEEeCCChHHHHHHHHHcC------------CeEEEEeCCcc-cCcHHHHhhcCCCEEEEeCCCCCcCCccC
Confidence 6778874 6667999999999999999 58999998652 22222222358899999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchh
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPV 312 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~ 312 (441)
.+++++|+++|++|+++||+||+|.+|.+++. .+...+.+..+++|+++||||.+|+||+|+||+++|+++
T Consensus 141 ~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~l-------- 211 (332)
T PRK06425 141 RDSLLTISEICRKKGALLFIDEAFIDFVPNRA-EEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYN-------- 211 (332)
T ss_pred HHHHHHHHHHHHHcCCEEEEecchhccccccc-hhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHH--------
Confidence 99999999999999999999999999987542 234444333468999999999999999999999999887
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChH
Q 013521 313 IKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSW 391 (441)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (441)
++.+..... ....+.+++. ++..... .++++.++.++++++.+.+.|+++|+.+..+++|+|+|++++ ++.
T Consensus 212 i~~l~~~~~--~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~~~~~~--~~~ 283 (332)
T PRK06425 212 MKISRKITE--PWSVCDPAID----FIRSIDLDYVAKHSLDIMENERSYLINNLEAMGFRAAGDPSANFITFMIP--DAH 283 (332)
T ss_pred HHHHHHcCC--CCccCHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCceEEEEEcC--CHH
Confidence 355554322 1223433332 2322222 456788999999999999999998888765568999999987 567
Q ss_pred HHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 392 DVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 392 ~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++.+.++++ ||.++||+.|+..++++|||+++ ++++.+.+++.|++++
T Consensus 284 ~~~~~l~~~-gi~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 284 DFYSYLLKN-GILVRLLDDYECLGEQYIRIAIR-RRSFNIKLVNALRNFL 331 (332)
T ss_pred HHHHHHHHC-CeEEEECCCCCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence 888887765 99999999997656789999985 5678889999888764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-46 Score=386.19 Aligned_cols=340 Identities=13% Similarity=0.184 Sum_probs=268.2
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC---CcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG---DEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~---~~I~~t~G~~~a 147 (441)
+.++|+|++|+|++++|+.+.+++.+++.+. ++ ..|.+++|++|++|+.+.+|++. ++|++|+|++++
T Consensus 696 g~~vI~LsinE~d~ppPp~V~eAi~eal~~~-------~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~el 766 (1082)
T PLN02672 696 ESSLIHMDVDESFLPVPSAVKASIFESFVRQ-------NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLAL 766 (1082)
T ss_pred CCCEEEEeCCCCCCCCCHHHHHHHHHHHhhc-------CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHH
Confidence 3579999999999999999999999877531 12 23567789999999987445543 489999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC-CccEEEE
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS-RTDIIFF 220 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~-~~~~v~i 220 (441)
+.. +..+++|||.|++++|+|+.|...++..| .+++.++++++++|.++.+. .. +.++|++
T Consensus 767 L~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~G------------a~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L 834 (1082)
T PLN02672 767 FNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLK------------ANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYI 834 (1082)
T ss_pred HHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHHhccCCCCEEEE
Confidence 987 67788999999999999999999999999 58999999766677776422 12 3468899
Q ss_pred cCCC-CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC---ccc----ccCCC--cceeEEEecCCcccCC
Q 013521 221 CSPN-NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR---SIY----EIPGA--REVAIEISSFSKFAGF 290 (441)
Q Consensus 221 ~~p~-NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~---~~~----~~~~~--~~~~i~i~S~SK~~~~ 290 (441)
|||| ||||.++|.+++++|+++|++||++||+||+|+++.+++.+. ++. .++.. ..++++++||||.+++
T Consensus 835 ~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~l 914 (1082)
T PLN02672 835 SGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLS 914 (1082)
T ss_pred ECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhcc
Confidence 9996 999999999999999999999999999999999888864321 111 12111 2479999999999999
Q ss_pred ccceeEEEEeeccccccCCchhHHHHHHHHhhhc-CCCcHHHHHHHHHhcC--CCcH-HHHHHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCF-NGASNIVQAGGLACLS--PDGF-QALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~--~~~~-~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
||+|+||++++++.+ ++.+........ ...+..++.++.+++. +..+ .++++.++.++++++.+.+.|+
T Consensus 915 pGLRIGylIap~~eL-------i~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~ 987 (1082)
T PLN02672 915 GGHEFGFLALNDSVL-------IDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLE 987 (1082)
T ss_pred HHHHheeEEeCCHHH-------HHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987632 455554332221 1122333444444442 2223 5788889999999999999999
Q ss_pred hCCCeeeCCCCceEEEEEcC------------------CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHH
Q 013521 367 SLGLKVNGGKNAPYVWVQFP------------------GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHRE 428 (441)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 428 (441)
++|+.+.+|.+|+|+|++++ +.++.++.+.+++++||.+.||+.|+. ++++||+++.+++
T Consensus 988 ~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~--~g~~RIsfa~~~e 1065 (1082)
T PLN02672 988 ACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI--PGYCRFSFALEDS 1065 (1082)
T ss_pred HCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC--CCeEEEEecCCHH
Confidence 99999988889999999763 125678889999888999999988764 6799999988889
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|+++
T Consensus 1066 ~LeeALerL~kf 1077 (1082)
T PLN02672 1066 EFDRALKAIARF 1077 (1082)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=357.68 Aligned_cols=328 Identities=19% Similarity=0.247 Sum_probs=261.6
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.++++|+.|++++++|+.+.+++.+.+... ..|++ .+..++|+++|+++ ++++++|++|+|+++++.+
T Consensus 19 ~~~~i~l~~~~~~~~~p~~~~~a~~~~~~~~------~~y~~-~~~~~lr~~ia~~~----~~~~~~i~it~Ga~~~l~~ 87 (356)
T PRK08056 19 PDQLLDFSANINPLGMPVSLKRAIIDNLDCA------ERYPD-VEYRHLHQALARHH----QVPASWILAGNGETESIFA 87 (356)
T ss_pred hhhEEEeccccCCCCCCHHHHHHHHHHHHhc------ccCcC-ccHHHHHHHHHHHh----CcChhhEEECCCHHHHHHH
Confidence 3568999999999999999999999877532 25754 57899999999997 7899999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC--C--CCCccEEEEcCCCCc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS--T--TSRTDIIFFCSPNNP 226 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~--~--~~~~~~v~i~~p~NP 226 (441)
+...+.+|+ +++++|+|+.+...++..| .+++.++.++++++.++.. . .+++++++++|||||
T Consensus 88 ~~~~l~~g~-viv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~k~v~l~~p~NP 154 (356)
T PRK08056 88 VVSGLKPRR-AMIVTPGFAEYRRALQQVG------------CEIRRYSLREADGWQLTDAILEALTPDLDCLFLCTPNNP 154 (356)
T ss_pred HHHHhCCCC-EEEeCCCcHHHHHHHHHcC------------CeEEEEecccccCCCccHHHHHhccCCCCEEEEeCCcCC
Confidence 554557876 6778999999999999998 5899999876656655421 1 368899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~ 305 (441)
||.+++.+++++|+++|++|+++||+||+|.+|.+++. +.+. +.. .+++++++||||.+|++|+|+||++++++.+
T Consensus 155 TG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~-~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~ 231 (356)
T PRK08056 155 TGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ--LAD-NPHLWVLRSLTKFYAIPGLRLGYLVNSDDAA 231 (356)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH--hcc-CCCEEEEEechhhccCcchhheeeecCCHHH
Confidence 99999999999999999999999999999999876542 1122 222 3578999999999999999999999864322
Q ss_pred ccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEE
Q 013521 306 YSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQ 384 (441)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 384 (441)
.+.+... ....+++.+.|.++.+++.+ ..+.++.++.++++++.+.+.|+++ ++.+.+ ++|+|+|++
T Consensus 232 -------~~~l~~~--~~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~~~~~~ 299 (356)
T PRK08056 232 -------VARMRRQ--QMPWSINAFAALAGEVILQD--RAYQQATWQWLAEEGARFYQALCALPLLTVWP-GRANYLFLR 299 (356)
T ss_pred -------HHHHHHh--CCCCchhHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcC-CCCcEEEEE
Confidence 3444432 22345778889888888863 3556888999999999999999887 777665 579999999
Q ss_pred cCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 385 FPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 385 ~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
++. ++.+++..+++ +||.+.||+.|.....++|||++. ++++.+.+++.|+++
T Consensus 300 ~~~-~~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~~l~~~ 352 (356)
T PRK08056 300 CER-PDIDLQRALLT-QRILIRSCANYPGLDSRYYRVAIR-SAAENERLLAALRNV 352 (356)
T ss_pred cCC-ChHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEEc-CHHHHHHHHHHHHHH
Confidence 973 35677777775 599999999996555679999985 456666777666654
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-46 Score=361.31 Aligned_cols=324 Identities=20% Similarity=0.268 Sum_probs=254.7
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh----CCCCCCcEEEcCCcHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD----MGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~----~~~~~~~I~~t~G~~~al 148 (441)
.+++|+.|+|++++|+.+.+++.+++... ....+|+ +.|..+||++||+|+.+. +.+++++|++|+|+++++
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al 104 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQG---IESNRYP-DGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELI 104 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhc---ccccCCC-CCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHH
Confidence 58999999999999999999999977641 1234684 579999999999999753 448899999999999999
Q ss_pred HH-HHHhcCCCC-EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------C---CCccE
Q 013521 149 SR-LQMLLGSNV-TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------T---SRTDI 217 (441)
Q Consensus 149 ~~-l~~l~~~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~---~~~~~ 217 (441)
.. +..++.+|| .|++++|+|+.+...++..| .+++.++++.+ ++.++++. . +++++
T Consensus 105 ~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~~~k~ 171 (374)
T PRK02610 105 RSLLIATCLGGEGSILVAEPTFSMYGILAQTLG------------IPVVRVGRDPE-TFEIDLAAAQSAIEQTQNPPVRV 171 (374)
T ss_pred HHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcC------------CEEEEecCCcc-cCCCCHHHHHHHHHhhcCCCceE
Confidence 86 566777886 89999999999999999999 58889987643 34444332 1 57899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+++||||||||.++|.+++++|+++| ++++||+||+|.+|.+.. ++..+.. .+++|+++||||.+|+||+|+||
T Consensus 172 i~l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~---~~~~~~~-~~~~ivi~SfSK~~g~~GlRiG~ 245 (374)
T PRK02610 172 VFVVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT---LVGELAQ-HPNWVILRTFSKAFRLAAHRVGY 245 (374)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCccc---hHHHHhc-CCCEEEEEecchhccCcccceee
Confidence 99999999999999999999999986 499999999999986432 2222322 35688999999999999999999
Q ss_pred EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCC
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGK 376 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 376 (441)
+++++++ ++.+...+. ..+++.+.|.++.+++.+ ...+.+.++..+++ ++.+.+.|+++ ++.+. ++
T Consensus 246 ~v~~~~l--------~~~l~~~~~--~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~-p~ 312 (374)
T PRK02610 246 AIGHPEL--------IAVLEKVRL--PYNLPSFSQLAAQLALEH-RQELLAAIPEILQE-RDRLYQALQELPQLRVW-PS 312 (374)
T ss_pred eecCHHH--------HHHHHHhcC--CCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHH-HHHHHHHHHhCCCcEeC-CC
Confidence 9998887 455655442 244788999999888874 23556666666555 67788889877 67654 57
Q ss_pred CceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 377 NAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 377 ~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|+|+|++++. .++.++.+.+ +++||.+.++ ++++||+++. .+++++++++|++++
T Consensus 313 ~g~f~~~~l~~~~~~~~~~~~l-~~~gi~v~~~-------~~~lRls~~~-~~~~~~~l~~l~~~l 369 (374)
T PRK02610 313 AANFLYLRLSQDAALAALHQAL-KAQGTLVRHT-------GGGLRITIGT-PEENQRTLERLQAAL 369 (374)
T ss_pred cceEEEEeCCCCCCHHHHHHHH-HHCCEEEEeC-------CCeEEEeCCC-HHHHHHHHHHHHHHH
Confidence 89999999974 3556666665 5569999763 4689999865 567899999998764
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-46 Score=359.62 Aligned_cols=326 Identities=21% Similarity=0.351 Sum_probs=264.6
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.++++|+.|++++++++.+.+++.+.+.. ..|.+..|..++|+++|+++ ++++++|++|+|+++++.+
T Consensus 29 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~-------~~~~p~~g~~~lr~~ia~~~----~~~~~~i~~t~G~~~~l~~~ 97 (359)
T PRK03158 29 EKIVKLASNENPYGPSPKVKEAIAAHLDE-------LALYPDGYAPELRTKVAKHL----GVDEEQLLFGAGLDEVIQMI 97 (359)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHH-------hhcCCCCcHHHHHHHHHHHh----CCCHHHEEECCCHHHHHHHH
Confidence 46899999999888888899999887753 23556789999999999997 7889999999999999997
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCcc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPT 227 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPt 227 (441)
+..++++||.|++++|+|+.+...+...| .+++.++.+. ++++.+ +++ .+++++++++||||||
T Consensus 98 ~~~~~~~gd~v~~~~p~y~~~~~~~~~~g------------~~~~~~~~~~-~~~d~~~l~~~~~~~~~~v~i~~p~NPt 164 (359)
T PRK03158 98 SRALLNPGTNTVMAEPTFSQYRHNAIIEG------------AEVREVPLKD-GGHDLEAMLKAIDEQTKIVWICNPNNPT 164 (359)
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHHHHcC------------CeEEEEecCC-CCcCHHHHHHhcCCCCCEEEEeCCCCCC
Confidence 46778999999999999999998888888 5888888862 333221 111 3678999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
|.++|.+++.++++.|+ +|++||+||+|.++.+++. +..+...+ ..+++++++||||.+|+||+|+||+++++++
T Consensus 165 G~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~-- 240 (359)
T PRK03158 165 GTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLE-KYENLIVLRTFSKAYGLAALRVGYGIASEEL-- 240 (359)
T ss_pred CCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHH-hcCCEEEEEechHhhcCcchhhehhcCCHHH--
Confidence 99999998888888774 6999999999999877543 22222222 3468999999999999999999999999887
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcC
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP 386 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 386 (441)
++.+..... ..+++.++|.++.+++++ ..++++.++.++++++.+.+.|+++|+.+.+ ++|+|+|++++
T Consensus 241 ------~~~~~~~~~--~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~~i~~~~~ 309 (359)
T PRK03158 241 ------IEKLNIARP--PFNTTRIAQYAAIAALED--QAFLKECVEKNAEGLEQYYAFCKEYGLFYYP-SQTNFIFVDTG 309 (359)
T ss_pred ------HHHHHHhcC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeeCC-CcCcEEEEECC
Confidence 455655443 245799999999999974 3567788888999999999999988887765 57899999985
Q ss_pred CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 387 GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 387 ~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.++.++.+.+++ +||.+.||+.|+ .++++||+++ ++++.++++++|++++
T Consensus 310 -~~~~~~~~~l~~-~gv~v~~g~~f~--~~~~iRi~~~-~~~~~~~l~~al~~~~ 359 (359)
T PRK03158 310 -RDANELFEALLK-KGYIVRSGAALG--FPTGVRITIG-LKEQNDKIIELLKELL 359 (359)
T ss_pred -CCHHHHHHHHHH-CCeEEeeCCCCC--CCCeEEEecC-CHHHHHHHHHHHHHhC
Confidence 356778888775 599999999996 3579999975 7888999999998864
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=363.77 Aligned_cols=336 Identities=29% Similarity=0.479 Sum_probs=272.8
Q ss_pred CeEEeCCCCCCCC----CcHHHHHHHHH-HHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCc
Q 013521 73 RLIRLGIGDTTQP----IPDIITSAMAE-HAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGA 144 (441)
Q Consensus 73 ~~i~l~~g~~~~~----~~~~~~~al~~-~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~ 144 (441)
++|+|+.|+++.. +++...+++.+ ... ......|++..|.++||+++|+|+.+ ++.++++ +|++++|+
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~ 77 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAAT----SSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGA 77 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHH----HTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhc----ccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccc
Confidence 5899999998765 34444444443 121 26677899999999999999999974 6667888 99999999
Q ss_pred HHHHHHH-HHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC----
Q 013521 145 QSDISRL-QML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS---- 213 (441)
Q Consensus 145 ~~al~~l-~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~---- 213 (441)
++++..+ ..+ .++||.|++++|+|+++...++..| .+++.++++.+.++..+++. .+
T Consensus 78 ~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 145 (363)
T PF00155_consen 78 QAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLG------------AEVIPVPLDSENDFHLDPEALEEALDELPSK 145 (363)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTT------------SEEEEEEEEETTTTEETHHHHHHHHHTSHTT
T ss_pred ccchhhhhhcccccccccceecCCccccccccccccC------------ceeeecccccccccccccccccccccccccc
Confidence 9999985 455 5799999999999999999999999 58888887654454444322 11
Q ss_pred --CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCc-ccccCCCcceeEEEecCCcccC
Q 013521 214 --RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRS-IYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 214 --~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~-~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
+++++++++||||||.++|.+++++|+++|++||++||+||+|.++.++.. ..+ ...++. ..++++++||||.||
T Consensus 146 ~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~g 224 (363)
T PF00155_consen 146 GPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDE-DDNVIVVGSLSKSFG 224 (363)
T ss_dssp TETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTT-TSTEEEEEESTTTTT
T ss_pred ccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccc-cccceeeeecccccc
Confidence 578999999999999999999999999999999999999999999888753 222 233333 334899999999999
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHHHHh
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~ 367 (441)
++|+|+||+++++++ ++.+........ .+.+.|.++.+++.+... ++++++++.++++++.+.+.|++
T Consensus 225 ~~GlRvG~i~~~~~~--------~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 294 (363)
T PF00155_consen 225 LPGLRVGYIVAPPEL--------IERLRRFQRSGL--SSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEE 294 (363)
T ss_dssp SGGGTEEEEEEEHHH--------HHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhh--------hhhhhhcccccc--ccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHH
Confidence 999999999998877 456665544333 378888888888875543 38899999999999999999999
Q ss_pred CCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-ecCHHHHHHHHHHH
Q 013521 368 LGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-FGHREYISEACRRL 437 (441)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~~~~~~~~~~l~~l 437 (441)
.|+.+.++++|+|+|+.++..++.++.++|++++||.+.||..|+. +++||+++ ..+++++++++++|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~--~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 295 IGITVLPPEAGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGV--PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp TTSEEEHHSBSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTS--TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred hhhheeeccCccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCC--CCEEEEEeccCCHHHHHHHHhhC
Confidence 9999988889999999997545678999999888999999999887 78999999 56899999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=361.38 Aligned_cols=342 Identities=14% Similarity=0.170 Sum_probs=253.0
Q ss_pred CCCCeEEeCCCC-CCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcE-----EEc
Q 013521 70 PDARLIRLGIGD-TTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEI-----FIS 141 (441)
Q Consensus 70 ~~~~~i~l~~g~-~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I-----~~t 141 (441)
.....++|+.|. ++...++.+.+++.++...........+|++..|.++||+++++|+.+... .++++| +.+
T Consensus 46 ~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g 125 (423)
T PLN02397 46 PSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSG 125 (423)
T ss_pred CCcceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccc
Confidence 345689999997 555455555555555543321114455899999999999999999865211 223333 344
Q ss_pred CCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC----C----CC
Q 013521 142 DGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS----T----TS 213 (441)
Q Consensus 142 ~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~----~----~~ 213 (441)
+|+.+.+..+..++.|||+|++++|+|+.|...++..| .+++.+++..++++..|++ . .+
T Consensus 126 ~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g------------~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~ 193 (423)
T PLN02397 126 TGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAG------------VPVRTYRYYDPKTRGLDFDGLLEDLKAAPD 193 (423)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcC------------CeEEEeecccCcCCccCHHHHHHHHHhCCC
Confidence 44443333456666799999999999999999999999 5888888743223444432 1 24
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC---CCCcccccCCCcceeEEEecCCcccCC
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP---SPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~---~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
+++++++++||||||.++|.+++++|+++|++||++||+||+|.+|.+++ .+.++..+....+++|+++||||.+++
T Consensus 194 ~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~ 273 (423)
T PLN02397 194 GSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGL 273 (423)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCC
Confidence 67788888999999999999999999999999999999999999998854 223444443334579999999999999
Q ss_pred ccceeEEEE--e-eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTV--V-PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-----QALRTVIDYYKENAKIIV 362 (441)
Q Consensus 291 ~G~r~G~l~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~ 362 (441)
+|+|+||++ + +++.+. ++...+.......+.+++.+.|.++.+++++..+ ++++++++.++++++.+.
T Consensus 274 ~G~RvG~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~ 349 (423)
T PLN02397 274 YGERVGALSVVCKSADVAV----RVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLY 349 (423)
T ss_pred ccccceEEEEEeCCHHHHH----HHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999995 4 333320 0122333333344555788899988888886431 347889999999999999
Q ss_pred HHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-cCHHHHHHHHHHH
Q 013521 363 DAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF-GHREYISEACRRL 437 (441)
Q Consensus 363 ~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~~~~~~l~~l 437 (441)
+.|+++| +.+..|++|+|+|++++ .+++.+|++++||.+.++ + |++++ .+++++++++++|
T Consensus 350 ~~L~~~~~~~~~~~~~p~gg~fl~~~l~----~~~~~~Ll~~~~V~v~~~--------~--Ri~~~~~~~~~i~~~~~~i 415 (423)
T PLN02397 350 DALEARGSPGDWSHITKQIGMFSFTGLN----KEQVDRMTKEYHIYMTRD--------G--RISMAGLSSKNVPYLADAI 415 (423)
T ss_pred HHHHhcCCCCCCCcccCCceEEEecCCC----HHHHHHHHHhCCEEECCC--------C--eEEEeeCCHHHHHHHHHHH
Confidence 9999986 77777889999999984 469999999999999631 2 99996 6899999999999
Q ss_pred HhhC
Q 013521 438 KNFL 441 (441)
Q Consensus 438 ~~~l 441 (441)
++++
T Consensus 416 ~~~~ 419 (423)
T PLN02397 416 HAVV 419 (423)
T ss_pred HHHH
Confidence 9864
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=357.73 Aligned_cols=328 Identities=23% Similarity=0.333 Sum_probs=258.0
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
..++++|+.|.+++.+++.+.+++.+... ...+|++..| .+||+++|+++ ++++++|++|+|+++++.+
T Consensus 35 ~~~~i~l~~~~~~~~~~~~~~~al~~~~~------~~~~Y~~~~g-~~lr~~ia~~~----~~~~~~i~~t~G~~~~l~~ 103 (371)
T PRK05166 35 VPRIAKLGSNENPLGPSPAVRRAFADIAE------LLRLYPDPQG-RALREAIAART----GVPADRIILGNGSEDLIAV 103 (371)
T ss_pred CcceEEcCCCCCCCCCCHHHHHHHHHHHH------HhhcCCCCcH-HHHHHHHHHHh----CcCHHHEEEcCCHHHHHHH
Confidence 34799999999988888888888887543 2457987778 49999999996 7889999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCc
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNP 226 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NP 226 (441)
+..++++||.|+++.|+|+.+...++..| .+++.++.+.+.+++.+ ++. .+++++++++|||||
T Consensus 104 ~~~~~~~~gd~vli~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NP 171 (371)
T PRK05166 104 ICRAVLRPGDRVVTLYPSFPLHEDYPTMMG------------ARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNP 171 (371)
T ss_pred HHHHhcCCCCEEEEcCCChHHHHHHHHHcC------------CeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCC
Confidence 56678999999999999999998888888 58889988754443322 221 257899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc-cCCCcceeEEEecCCcccCCccceeEEEEeecccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE-IPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~ 305 (441)
||.++|.+++++|+++|++ +++||+||+|.+|.+++...+... ++...+++|+++||||.||+||+|+||++++++.+
T Consensus 172 tG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l 250 (371)
T PRK05166 172 VGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPEL 250 (371)
T ss_pred CCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHH
Confidence 9999999999999999874 889999999999886543333333 22234579999999999999999999988754332
Q ss_pred ccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEc
Q 013521 306 YSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQF 385 (441)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 385 (441)
.+.+..... ..+++.++|.++.+++.+. .++++.++.++++++.+.+.|+++|+.+. +++|+|+|+++
T Consensus 251 -------~~~~~~~~~--~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-p~~g~fl~~~~ 318 (371)
T PRK05166 251 -------VGLLDRVRT--PFNVNGAAQAAALAALDDE--EHLAKGVALALAERERLKKELAEMGYRIA-PSRANFLFFDA 318 (371)
T ss_pred -------HHHHHHhcc--CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCcCeeC-CCcCCEEEEeC
Confidence 455554332 3457889998888888743 56788889999999999999999888765 46899999998
Q ss_pred CCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecC--HHHHHHHHHHHH
Q 013521 386 PGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGH--REYISEACRRLK 438 (441)
Q Consensus 386 ~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~--~~~~~~~l~~l~ 438 (441)
+. ++.++.+.++++ ||.+.||..++ .+++|||+++.. .+.+.++++++.
T Consensus 319 ~~-~~~~l~~~l~~~-gi~v~p~~~~~--~~~~iRi~~~~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 319 RR-PASAVAEALLRQ-GVIVKPWKQPG--FETFIRVSIGSPEENDHFVAALDKVL 369 (371)
T ss_pred CC-CHHHHHHHHHHC-CeEEecCCCCC--CCCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 63 467788877765 99999997643 478999998652 345555655553
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=353.85 Aligned_cols=324 Identities=21% Similarity=0.347 Sum_probs=258.8
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.++|+|+.|++++++|+.+.+++.+.+.. ...+|++ .|..+||++||+|+ ++++++|++|+|+++++.+
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-----~~~~y~~-~~~~~lr~aia~~~----~~~~~~I~it~G~~~al~~~ 93 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGD-----DLRLYPD-PNADALRQAIAAYY----GLDPEQVFVGNGSDEVLAHA 93 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhh-----hhhcCCC-CcHHHHHHHHHHHh----CCCHHHEEEcCCHHHHHHHH
Confidence 46899999999998889999999987763 3457854 47799999999997 7899999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-CCCccEEEEcCCCCcccc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-TSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~~~~~~v~i~~p~NPtG~ 229 (441)
+..++++||+|++++|+|+.+...++..| .+++.++.+++ +.+|++. ...+++++++|||||||.
T Consensus 94 ~~~l~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~--~~~d~~~l~~~~~~v~~~~P~NPtG~ 159 (353)
T PRK05387 94 FLAFFNHDRPLLFPDITYSFYPVYAGLYG------------IPYEEIPLDDD--FSIDVEDYLRPNGGIIFPNPNAPTGI 159 (353)
T ss_pred HHHhcCCCCEEEEeCCCHHHHHHHHHHcC------------CEEEEeecCCC--CCCCHHHHHhcCCEEEEeCCCCCCCC
Confidence 56778999999999999999998888888 58888888643 3334332 135688899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~ 309 (441)
++|.+++++|+++++ +++||+||+|.+|... ...++.. ..+++++++||||.+|+||+|+||+++++++
T Consensus 160 ~~~~~~~~~l~~~~~--~~~livDe~y~~~~~~-~~~~~~~---~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~----- 228 (353)
T PRK05387 160 ALPLAEIERILAANP--DSVVVIDEAYVDFGGE-SAIPLID---RYPNLLVVQTFSKSRSLAGLRVGFAIGHPEL----- 228 (353)
T ss_pred CCCHHHHHHHHHhCC--CcEEEEeCcccccCCc-chHHHHh---hCCCEEEEEehhHhhcchhhhceeeecCHHH-----
Confidence 999999999998654 8999999999876422 1222221 2467899999999999999999999998877
Q ss_pred chhHHHHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCC
Q 013521 310 YPVIKDFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS 388 (441)
Q Consensus 310 ~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 388 (441)
.+.+....... ..+++.+.|.++.+++.+ ..++++.+++++++++.+.+.|+++|+.+. +++++|+|+++++.
T Consensus 229 ---~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~ 302 (353)
T PRK05387 229 ---IEALNRVKNSFNSYPLDRLAQAGAIAAIED--EAYFEETRAKVIATRERLVEELEALGFEVL-PSKANFVFARHPSH 302 (353)
T ss_pred ---HHHHHHhhccCCCCCcCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeEC-CCcCcEEEEECCCC
Confidence 45555544322 345788999998888874 345678889999999999999999888765 46889999999865
Q ss_pred ChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 389 SSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 389 ~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++.++.+.+.+ +||.+.+ |+ +..++++||+++ +.+++++++++|++++
T Consensus 303 ~~~~~~~~l~~-~gi~v~~---~~~~~~~~~iRis~~-~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 303 DAAELAAKLRE-RGIIVRH---FNKPRIDQFLRITIG-TDEEMEALVDALKEIL 351 (353)
T ss_pred CHHHHHHHHHH-CCEEEEE---CCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHh
Confidence 67778877754 5999975 33 234689999986 6689999999998764
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=344.59 Aligned_cols=322 Identities=24% Similarity=0.387 Sum_probs=266.2
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC-CCCCcEEEcCCcHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG-IEGDEIFISDGAQSDISR 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~-~~~~~I~~t~G~~~al~~ 150 (441)
+++++|+.|++++++|+.+.+++.+.+.. ...|+ +....++++++++++ + .++++|++++|+++.|.+
T Consensus 22 ~~~i~LssNenP~gp~~~~~~~~~~~~~~------~~rYP-d~~~~~l~~a~a~~~----~~~~~~~V~~gnGsde~i~~ 90 (356)
T COG0079 22 PGIIKLSSNENPYGPPPKVIEAIRAALDK------LNRYP-DPDYRELRAALAEYY----GVVDPENVLVGNGSDELIEL 90 (356)
T ss_pred ccceeecCCCCCCCCCHHHHHHHHHHHHh------hccCC-CCcHHHHHHHHHHHh----CCCCcceEEEcCChHHHHHH
Confidence 36899999999999999999999887753 34684 458899999999997 6 889999999999999998
Q ss_pred H-HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCC
Q 013521 151 L-QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPN 224 (441)
Q Consensus 151 l-~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~ 224 (441)
+ ..++.+||.|+++.|+|..|...++..| .+++.++..+ |..|++. ..++++|++||||
T Consensus 91 l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g------------~~~~~v~~~~---~~~d~~~~~~~~~~~~~lv~i~nPN 155 (356)
T COG0079 91 LVRAFVEPGDTVLIPEPTFSMYEIAAQLAG------------AEVVKVPLKE---FRLDLDAILAAIRDKTKLVFLCNPN 155 (356)
T ss_pred HHHHhhcCCCEEEEcCCChHHHHHHHHhcC------------CeEEEecccc---cccCHHHHHHhhhcCCCEEEEeCCC
Confidence 5 6678999999999999999999999999 6899999865 4444332 2479999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||..++.++++++++.+.+ +.+||+||+|.+|... .++.-.. .++++++++||||+||++|+|+||+++++++
T Consensus 156 NPTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~---~~~~l~~-~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~ 230 (356)
T COG0079 156 NPTGTLLPREELRALLEALPE-GGLVVIDEAYIEFSPE---SSLELLK-YPPNLIVLRTFSKAFGLAGLRVGYAIANPEL 230 (356)
T ss_pred CCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCCc---hhhhhcc-CCCCEEEEEecHHhhhcchhceeeccCCHHH
Confidence 999999999999999999888 9999999999998862 2222222 4577999999999999999999999999888
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCe-eeCCCCceEEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLK-VNGGKNAPYVWV 383 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~ 383 (441)
++.+.+++. .+++|.+++.++.+++.+. +++++.++...+.++.+.+.|+.+|+. +. |+.++|+++
T Consensus 231 --------i~~l~~vr~--p~~v~~~a~~aa~aal~~~--~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~-pS~aNFvlv 297 (356)
T COG0079 231 --------IAALNKVRP--PFNVSSPALAAAIAALRDA--DYLEESVERIREERERLYAALKALGLFGVF-PSQANFVLV 297 (356)
T ss_pred --------HHHHHHhcC--CCCCCHHHHHHHHHHcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCCeec-CCCCcEEEE
Confidence 466665543 3448999999999999865 778999999999999999999998855 55 467999999
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+++......+.+.|+++ ||.++.... .+..++|+||++.+.++ .++++++|+++
T Consensus 298 ~~~~~~~~~l~~~L~~~-giivR~~~~-~~~~~~~lRitvgt~ee-n~~ll~AL~~~ 351 (356)
T COG0079 298 RVPDAEAAALAEALLKK-GILVRDCSS-VGLLPGYLRITVGTPEE-NDRLLAALREV 351 (356)
T ss_pred ECCCccHHHHHHHHHHC-CEEEEeCCC-CCCCCCeEEEEeCCHHH-HHHHHHHHHHH
Confidence 99842244666776665 999999765 45567899999865444 48888888765
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=351.29 Aligned_cols=324 Identities=20% Similarity=0.313 Sum_probs=260.2
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG-DEIFISDGAQSDISR 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~al~~ 150 (441)
.++++|+.|++++++|+.+.+++.+.+.. ....+|++ .|..+||+++|+|+ ++++ ++|++|+|+++++.+
T Consensus 26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~-~~~~~lr~~ia~~~----~~~~~~~I~~t~G~~~~i~~ 96 (356)
T PRK04870 26 TGMVKLDAMENPYRLPAELRAELGERLAE----VALNRYPD-PRAAALKAALRAAM----GVPAGADVLLGNGSDELIQL 96 (356)
T ss_pred CCceeCcCCCCCCCCCHHHHHHHHHHhhc----cccccCCC-CCHHHHHHHHHHHh----CcCCCCcEEEcCCHHHHHHH
Confidence 47999999999999999999999998753 34567865 68899999999997 5554 599999999999998
Q ss_pred H-HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC---CCCccEEEEcCCCC
Q 013521 151 L-QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST---TSRTDIIFFCSPNN 225 (441)
Q Consensus 151 l-~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~---~~~~~~v~i~~p~N 225 (441)
+ ..++++||+|++++|+|+.+...++..| .+++.++++++..++++ +++ ..+++++++|+|||
T Consensus 97 ~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~N 164 (356)
T PRK04870 97 LALACAKPGATVLAPEPGFVMYRMSAKLAG------------LEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNN 164 (356)
T ss_pred HHHHhcCCCCEEEECCCCHHHHHHHHHHcC------------CEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCC
Confidence 4 5677999999999999999999999999 58999998743232221 111 25789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~ 305 (441)
|||.++|.+++++|+++| +.++|+||+|.+|..... .+ .+. ..+++++++|||| +++||+|+||+++++++
T Consensus 165 PtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~~-~~--~~~-~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~- 235 (356)
T PRK04870 165 PTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDSW-LP--RLA-RFPNLLVMRTVSK-LGLAGLRLGYLAGHPAW- 235 (356)
T ss_pred CCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCcch-HH--HHh-hCCCEEEEecchh-hhhHHHhhhhhhCCHHH-
Confidence 999999999999999998 678999999998765321 11 122 2357999999999 88999999999999877
Q ss_pred ccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEE
Q 013521 306 YSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQ 384 (441)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 384 (441)
++.+...+. ..+++.++|.++..++++ ..++++.++.++++++.+.+.|+++ |+.+. +.+|+|+|++
T Consensus 236 -------i~~~~~~~~--~~~~~~~~q~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~ 303 (356)
T PRK04870 236 -------IAELDKVRP--PYNVNVLTQATALFALEH--VDVLDAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVR 303 (356)
T ss_pred -------HHHHHHccC--CCcCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEE
Confidence 355554432 234788899888888864 3457888899999999999999987 88765 4678899999
Q ss_pred cCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 385 FPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 385 ~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++ ++.++... ++++||.|.||+.|+...++++||+++ +.++.++++++|.+++
T Consensus 304 ~~--~~~~~~~~-l~~~gI~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 304 VP--DAAAVFDG-LKTRGVLVKNLSGMHPLLANCLRVTVG-TPEENAQFLAALKAAL 356 (356)
T ss_pred CC--CHHHHHHH-HHHCCEEEEECCCCCCCCCCeEEEeCC-CHHHHHHHHHHHHHhC
Confidence 97 44555555 566799999999997666789999986 5778889998888764
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=349.64 Aligned_cols=335 Identities=22% Similarity=0.311 Sum_probs=269.0
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.++|+|+.+++++++++.+.+++.+.+.. ....+|++..|..++|+++|+++ ++++++|++|+|+++++.+
T Consensus 28 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~l----~~~~~~v~~~~g~t~al~~~ 99 (380)
T PRK06225 28 KEMIWMGQNTNHLGPHEEVREAMIRCIEE----GEYCKYPPPEGFPELRELILKDL----GLDDDEALITAGATESLYLV 99 (380)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhc----CCCCCCCCCcchHHHHHHHHHhc----CCCCCcEEEeCCHHHHHHHH
Confidence 47999999999999999999999998864 34557888889999999999996 7889999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC-CCCccCCCCC-----CCCccEEEEcCCC
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP-ENNFFPDLST-----TSRTDIIFFCSPN 224 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~~-----~~~~~~v~i~~p~ 224 (441)
+..++.+||.|++++|+|..+...+...| .+++.++++. ++++..+++. .++++++++++||
T Consensus 100 ~~~~~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~ 167 (380)
T PRK06225 100 MRAFLSPGDNAVTPDPGYLIIDNFASRFG------------AEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPL 167 (380)
T ss_pred HHHhcCCCCEEEEcCCCCcchHHHHHHhC------------ceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCC
Confidence 56678999999999999999888888888 5888888743 2233333221 3578999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.++|.+++++|+++|++||+++|+||+|.+|..+. .+...+ .+++++++.||||.+|++|+|+||+++++++
T Consensus 168 NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~--~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l 243 (380)
T PRK06225 168 NPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH--TLAAEY--APEHTVTSYSFSKIFGMAGLRIGAVVATPDL 243 (380)
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC--Cchhhc--CCCCEEEEeechhhcCCccceeEEEecCHHH
Confidence 999999999999999999999999999999999876432 222233 2467899999999999999999999998877
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCee-eCCCCceEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKV-NGGKNAPYVW 382 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~ 382 (441)
++.+..... ...+.+.++|.++.+.+.. ...++++.++.++++++.+.+.|+++ |+.+ ..+.+|+|+|
T Consensus 244 --------~~~~~~~~~-~~~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~ 313 (380)
T PRK06225 244 --------IEVVKSIVI-NDLGTNVIAQEAAIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMV 313 (380)
T ss_pred --------HHHHHHHHh-cccCCCHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEE
Confidence 345544432 2345788899888888864 23567888888889899999999885 5432 2346788999
Q ss_pred EEcC--CCChHHHHHHHHHhcCeEEeCCCCcCC-CCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 383 VQFP--GSSSWDVFAEILEKTHILTIPGSGFGP-GGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 383 ~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++++ +.+..++..++. ++||.+.||..|+. .+++++|++++.+++++++++++|++++
T Consensus 314 ~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~ 374 (380)
T PRK06225 314 IDISEAGIDPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVV 374 (380)
T ss_pred EEcccccCCHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9986 346677777776 55999999987753 3467999999888899999999998763
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=350.05 Aligned_cols=322 Identities=19% Similarity=0.269 Sum_probs=257.3
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
++.++|+.|++++++|+.+.+++.+.+... ..|++. +..+||++||+++ ++++++|++|+|+++++.+
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~------~~Y~~~-~~~~Lr~aia~~~----~v~~e~I~it~Gs~~ai~~~ 111 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAALS------GRYDLE-LEDDLRTLFAAQE----GLPADHVMAYAGSSEPLNYA 111 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHHh------cCCCCc-hHHHHHHHHHHHh----CcChhhEEEcCChHHHHHHH
Confidence 568999999999999999999999877531 257554 5899999999986 8899999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC-CCCccEEEEcCCCCccc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST-TSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~-~~~~~~v~i~~p~NPtG 228 (441)
+..++++||+|++++|+|+.+...++..| .+++.++.+.+..++.+ +++ .++++++++||||||||
T Consensus 112 ~~~l~~~gd~Vli~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~v~l~nP~NPTG 179 (370)
T PRK09105 112 VLAFTSPTAGLVTADPTYEAGWRAADAQG------------APVAKVPLRADGAHDVKAMLAADPNAGLIYICNPNNPTG 179 (370)
T ss_pred HHHHcCCCCEEEEeCCChHHHHHHHHHcC------------CeEEEecCCCCCCCCHHHHHhcCCCCCEEEEeCCCCCCC
Confidence 56778999999999999999999999998 58888888653222211 211 35789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccC
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN 308 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~ 308 (441)
.++|.+++++|++.++ ++++||+||+|.+|... + +...+.+..+++++++||||.||++|+|+||+++++++
T Consensus 180 ~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~--~-s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~---- 251 (370)
T PRK09105 180 TVTPRADIEWLLANKP-AGSVLLVDEAYIHFSDA--P-SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDL---- 251 (370)
T ss_pred cCcCHHHHHHHHHhCC-CCcEEEEECchHHhccC--c-chHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHH----
Confidence 9999999999998754 58999999999877542 2 34444333578999999999999999999999998877
Q ss_pred CchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCC
Q 013521 309 GYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS 388 (441)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 388 (441)
++.+... ..+.++.+.|.++.+++.+ ..+++..++.++++++.+.+.|+++|+.+.++ .+.|+|++++ .
T Consensus 252 ----i~~l~~~---~~~~~~~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~-~~~f~~~~~~-~ 320 (370)
T PRK09105 252 ----LAKLARF---GHNPLPVPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKKGYKCTPS-QANCFMVDVK-R 320 (370)
T ss_pred ----HHHHHhc---CCCCcCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCC-CCcEEEEeCC-C
Confidence 3455443 3344788889888888875 46788899999999999999999988887765 4556678876 3
Q ss_pred ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 389 SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 389 ~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+..++.+.++++ ||.+ |..|. ..++++||+++ ++++++++++.|+++
T Consensus 321 ~~~~l~~~L~~~-gI~v--~~~~~-~~~~~~Ris~~-~~~~~~~l~~al~~~ 367 (370)
T PRK09105 321 PAKAVADAMAKQ-GVFI--GRSWP-IWPNWVRVTVG-SEEEMAAFRSAFAKV 367 (370)
T ss_pred CHHHHHHHHHHC-CcEE--ecCCC-CCCCeEEEEcC-CHHHHHHHHHHHHHH
Confidence 567788888766 9998 44453 34689999986 467788888888765
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=351.27 Aligned_cols=323 Identities=21% Similarity=0.291 Sum_probs=259.4
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL 151 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l 151 (441)
...++|+.|++++++|+.+.+++.+.+.. ..+|++. +..+||++||+|+ ++++++|++|+|+++++.++
T Consensus 32 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~------~~~Y~~~-~~~~Lr~~ia~~~----~~~~~~I~it~G~~~~l~~~ 100 (369)
T PRK08153 32 PFRARIGANESGFGPSPSVIAAMREAAAE------IWKYGDP-ENHDLRHALAAHH----GVAPENIMVGEGIDGLLGLI 100 (369)
T ss_pred cceeEecCCCCCCCCCHHHHHHHHHHHHH------hhcCCCC-ccHHHHHHHHHHh----CCCHHHEEEcCCHHHHHHHH
Confidence 34679999999999999999999887642 2368655 5899999999997 78999999999999999985
Q ss_pred -HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CC---CCCCccEEEEcCCCCc
Q 013521 152 -QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LS---TTSRTDIIFFCSPNNP 226 (441)
Q Consensus 152 -~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~---~~~~~~~v~i~~p~NP 226 (441)
..++++||.|++++|+|+.+...+...| .+++.+|.+.+ ..+.+ +. ...+++++++||||||
T Consensus 101 ~~~~~~~gd~vlv~~p~y~~~~~~~~~~g------------~~~~~vp~~~~-~~~~~~l~~~~~~~~~~~i~l~~P~NP 167 (369)
T PRK08153 101 VRLYVEPGDPVVTSLGAYPTFNYHVAGFG------------GRLVTVPYRDD-REDLDALLDAARRENAPLVYLANPDNP 167 (369)
T ss_pred HHHhcCCCCEEEECCCcchHHHHHHHHcC------------CeEEEeeCCCC-CCCHHHHHHHhcccCCcEEEEeCCCCC
Confidence 5668999999999999999998888888 58888887654 22211 11 1357899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
||.++|.+++++|+++|+ ++++||+||+|.++.+++...++. ...+++++++||||.+|+||+|+||+++++++
T Consensus 168 tG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~---~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~-- 241 (369)
T PRK08153 168 MGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGAAPPID---TDDPNVIRMRTFSKAYGLAGARVGYAIGAPGT-- 241 (369)
T ss_pred CCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCcccchhhh---hcCCCEEEEecchHhccCcchheeeeecCHHH--
Confidence 999999999999999887 489999999999988764333332 22467999999999999999999999999877
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcC
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP 386 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 386 (441)
++.+..... ..+++.++|.++.+++.+ .+++++.++.++++++.+.+.|++.|+.+. +.+++|+|++++
T Consensus 242 ------~~~l~~~~~--~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~-p~~~~f~~~~~~ 310 (369)
T PRK08153 242 ------IKAFDKVRN--HFGMNRIAQAAALAALKD--QAYLAEVVGKIAAARDRIAAIARANGLTPL-PSATNFVAIDCG 310 (369)
T ss_pred ------HHHHHHhhc--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCccC-CCcCcEEEEECC
Confidence 455655443 245899999999999974 356788899999999999999998888755 478999999986
Q ss_pred C--CChHHHHHHHHHhcCeEEe-CCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 387 G--SSSWDVFAEILEKTHILTI-PGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 387 ~--~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
. ....++.+++++ +||.++ |+.. .+++++||++. ++++++.+++.|+++
T Consensus 311 ~~~~~a~~l~~~l~~-~Gi~v~~p~~~---~~~~~iRis~~-~~~~~~~~~~al~~~ 362 (369)
T PRK08153 311 RDGAFARAVLDGLIA-RDIFVRMPGVA---PLDRCIRVSCG-PDEELDLFAEALPEA 362 (369)
T ss_pred CCcccHHHHHHHHHH-CCeEEeeCCCC---CCCCeEEEecC-CHHHHHHHHHHHHHH
Confidence 2 234566666665 599995 6542 23579999986 678899999988775
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=353.57 Aligned_cols=341 Identities=18% Similarity=0.204 Sum_probs=258.5
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-hCCCC---CCcEEEcCCcHHHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-DMGIE---GDEIFISDGAQSDIS 149 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~---~~~I~~t~G~~~al~ 149 (441)
-++.++|....+..+.+.+++.+.+.+... +..++|++..|.++||+++++++.+ ..... .++|++|+|+++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~ 83 (388)
T PRK08637 5 KYNATIGMATEKGGPMYLSSLQDLLNDLTP-DEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLS 83 (388)
T ss_pred ceecceeeEecCCCcchHHHHHHHHHhhcc-ccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHH
Confidence 467777765433345777777777766432 5677999999999999999999865 32333 368999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHH-HhccccccccccCccceeEEeecC-CCCCccCC-CCC------CCCccEEE
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSV-IVGQAGKFLKETGKYRNIVYMNCR-PENNFFPD-LST------TSRTDIIF 219 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~v~~v~~~-~~~~~~~~-~~~------~~~~~~v~ 219 (441)
+ +..+++|||.|++++|+|+.|...+. ..| .+++.+++. ++++++.+ ++. .+..++++
T Consensus 84 ~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g------------~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~ 151 (388)
T PRK08637 84 LVADLFVDQGDTVLLPDHNWGNYKLTFNTRRG------------AEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVI 151 (388)
T ss_pred HHHHHhcCCCCEEEEcCCCCccHHHHHHHhcC------------CEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEE
Confidence 8 56677999999999999999988754 567 588888884 33344332 211 13445566
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHH-----cCcEEEEcccccccccCCCC-Ccc-cccCCCccee--EEEecCCcccCC
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKA-----NGSIIVYDSAYAAYITDPSP-RSI-YEIPGAREVA--IEISSFSKFAGF 290 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~-----~~~~ii~De~~~~~~~~~~~-~~~-~~~~~~~~~~--i~i~S~SK~~~~ 290 (441)
++|||||||.++|.+++++|+++|++ |+++||+||+|.++.+++.+ .++ ..+.+..+++ ++++||||.+++
T Consensus 152 ~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~ 231 (388)
T PRK08637 152 LNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFV 231 (388)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCC
Confidence 77999999999999999999998875 89999999999999887542 233 2232234564 556799999999
Q ss_pred ccceeEEEEeec------cccccCCchhHHHHHHH----HhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPE------ELRYSNGYPVIKDFNRI----VCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAK 359 (441)
Q Consensus 291 ~G~r~G~l~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~ 359 (441)
||+|+||++++. .+ .+.+... ......++|.++|.++.+++.+..+ .++++.+..++++++
T Consensus 232 pGlRlG~~~~~~~~~~~~~l--------~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~ 303 (388)
T PRK08637 232 WGFRVGFITFGTKAGSSQTV--------KEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYE 303 (388)
T ss_pred cccceEEEEEccccCCcHHH--------HHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999763 33 3344321 1223345789999999999986555 567888889999999
Q ss_pred HHHHHHHhC----CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHH
Q 013521 360 IIVDAFQSL----GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEAC 434 (441)
Q Consensus 360 ~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l 434 (441)
.+.+.|++. ++.+.++.+|+|+|+++++.++.++++.+++++||.+.+. +++++||+++. +.+++++++
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~l~~~l~~~~gv~~~~~------~~~~iRi~~~~~~~~~i~~~~ 377 (388)
T PRK08637 304 KTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKGVDAEELRVHLLEKYGIGTIAL------NETDLRIAFSCVEEEDIPELF 377 (388)
T ss_pred HHHHHHHhhCCCCCcccccccceEEEEecCChHHHHHHHHHHhhhcceEEEec------cCCceEEEeecCCHHHHHHHH
Confidence 999999765 5777777899999999975456778888887789988742 35689999965 789999999
Q ss_pred HHHHhhC
Q 013521 435 RRLKNFL 441 (441)
Q Consensus 435 ~~l~~~l 441 (441)
++|++++
T Consensus 378 ~~l~~~~ 384 (388)
T PRK08637 378 DSIYKAI 384 (388)
T ss_pred HHHHHHH
Confidence 9998864
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=342.82 Aligned_cols=317 Identities=17% Similarity=0.286 Sum_probs=249.2
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.++++|+.|++++++|+.+.+++.+++.. .....|++ .|..+||+++|+|+.+. ++++++|++|+|+++++.+
T Consensus 18 ~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~----~~~~~Y~~-~~~~~Lr~aia~~~~~~-~~~~~~i~it~Ga~~~i~~ 91 (335)
T PRK14808 18 KRDRTYLALNENPFPFPEDLVDEVFRRLNS----DTLRIYYD-SPDEELIEKILSYLDTD-FLSKNNVSVGNGADEIIYV 91 (335)
T ss_pred CCceeEecCCCCCCCCCHHHHHHHHHHhhh----hhhhcCCC-CChHHHHHHHHHHhCCC-CCCcceEEEcCCHHHHHHH
Confidence 357899999999999999999999987753 23344744 48999999999998653 2789999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccC
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHA 230 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~ 230 (441)
++..+ |.|++++|+|+.+...++..| .+++.++++.+.. .+.....++++++++|||||||.+
T Consensus 92 ~~~~~---d~v~v~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~--~~~~~~~~~~~i~i~nP~NPTG~~ 154 (335)
T PRK14808 92 MMLMF---DRSVFFPPTYSCYRIFAKAVG------------AKFLEVPLTKDLR--IPEVNVGEGDVVFIPNPNNPTGHV 154 (335)
T ss_pred HHHHh---CcEEECCCCHHHHHHHHHHcC------------CeEEEecCCCcCC--CChhHccCCCEEEEeCCCCCCCCC
Confidence 65555 679999999999999999999 5889999875432 221123457899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCc
Q 013521 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY 310 (441)
Q Consensus 231 ~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~ 310 (441)
+|.+++++|+ +++++||+||+|.+|... ...++. . ..+++++++||||++|++|+|+||+++++++
T Consensus 155 ~s~~~l~~l~----~~~~~ii~DE~Y~~f~~~-~~~~~~--~-~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~------ 220 (335)
T PRK14808 155 FEREEIERIL----KTGAFVALDEAYYEFHGE-SYVDLL--K-KYENLAVIRTFSKAFSLAAQRIGYVVSSEKF------ 220 (335)
T ss_pred cCHHHHHHHH----hcCCEEEEECchhhhcCC-chHHHH--H-hCCCEEEEEechhhccCcccceEEEEeCHHH------
Confidence 9988888886 479999999999997522 122221 1 2358999999999999999999999999887
Q ss_pred hhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCCh
Q 013521 311 PVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSS 390 (441)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (441)
++.+...+. ..+++.++|.++.+++++ .++..+.++.++++++.+.+.|++.|+.+.++ .|+|+|+++++.+.
T Consensus 221 --~~~l~~~~~--~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~-~g~f~~~~l~~~~~ 293 (335)
T PRK14808 221 --IDAYNRVRL--PFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITDS-RGNFVFIFMEKEEK 293 (335)
T ss_pred --HHHHHHhcC--CCCCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC-CCeEEEEeCCCccH
Confidence 455655442 345788999998888864 34567777888888999999999989887764 78899999985455
Q ss_pred HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 391 WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 391 ~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
.++.+.+. ++||.|++ | .+++||+++ ++++.+++++.|+++
T Consensus 294 ~~~~~~l~-~~Gi~V~~---~----~~~~Risi~-~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 294 ERLLEHLR-AKNIAVRS---F----REGVRITIG-KREENDMILKELEVF 334 (335)
T ss_pred HHHHHHHH-HCCeEEEE---C----CCCeEEecC-CHHHHHHHHHHHHhh
Confidence 56655555 56999985 4 258999974 567888888888764
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=349.09 Aligned_cols=320 Identities=22% Similarity=0.318 Sum_probs=253.3
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.++|+|+.|++++++|+.+.+++.+. .....|+ +.+..+||+++|+|+ ++++++|++|+|+++++.+
T Consensus 51 ~~~~i~l~~n~~p~~~~~~v~~a~~~~-------~~~~~Yp-~~~~~~lr~~ia~~~----~~~~~~I~~t~Ga~~~i~~ 118 (380)
T PLN03026 51 PEDIVKLDANENPYGPPPEVLEALGNM-------KFPYVYP-DPESRRLRAALAEDS----GLESENILVGCGADELIDL 118 (380)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHhh-------HhhccCC-CCCHHHHHHHHHHHh----CcChhhEEEcCCHHHHHHH
Confidence 357999999999998888888887542 1223574 457899999999997 7899999999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEEEcCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIFFCSP 223 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~i~~p 223 (441)
+..++++||+|++++|+|+.|...++..| .+++.++.+.+ +..+++. .+++++|++|||
T Consensus 119 ~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g------------~~~~~v~~~~~--~~~d~~~l~~~~~~~~~~~v~l~~P 184 (380)
T PLN03026 119 LMRCVLDPGDKIIDCPPTFGMYVFDAAVNG------------AEVIKVPRTPD--FSLDVPRIVEAVETHKPKLLFLTSP 184 (380)
T ss_pred HHHHhcCCCCEEEEcCCChHHHHHHHHHcC------------CEEEEeecCCC--CCcCHHHHHHHHhccCCcEEEEeCC
Confidence 46678999999999999999988888888 58888887543 3333221 368999999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
|||||.+++.+++++|++.+ ++||+||+|.+|.+++...+ .++ ..+++|+++||||.||++|+|+||++++++
T Consensus 185 ~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~~~~~--~~~-~~~~viv~~SfSK~~glaGlRiGy~~~~~~ 257 (380)
T PLN03026 185 NNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQESRMK--WVK-KYDNLIVLRTFSKRAGLAGLRVGYGAFPLS 257 (380)
T ss_pred CCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCcchHH--HHH-hCCCEEEEecchHhhcCccccceeeecCHH
Confidence 99999999998888888753 89999999999876532222 122 246899999999999999999999999988
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCceEEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-LKVNGGKNAPYVW 382 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~ 382 (441)
+ ++.+...+. ..+++.++|.++.++|.+ ..++++.++.++++++.+.+.|++++ +.+ .+++++|+|
T Consensus 258 ~--------i~~l~~~~~--~~~~~~~~q~aa~~aL~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~ 324 (380)
T PLN03026 258 I--------IEYLWRAKQ--PYNVSVAAEVAACAALSN--PKYLEDVKNALVEERERLFGLLKEVPFLEP-YPSDANFIL 324 (380)
T ss_pred H--------HHHHHHhcC--CCCCCHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEE
Confidence 7 355554443 245788999999999975 35678899999999999999999885 444 457899999
Q ss_pred EEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 383 VQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 383 ~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
++++ +.++.++...++ ++||.+++++.+ ..++++||+++ ++++.+.+++.|+++
T Consensus 325 ~~~~~~~~~~~~~~~l~-~~gI~v~~~~~~--~~~~~lRis~~-~~~~~~~l~~al~~~ 379 (380)
T PLN03026 325 CRVTSGRDAKKLKEDLA-KMGVMVRHYNSK--ELKGYIRVSVG-KPEHTDALMEALKQL 379 (380)
T ss_pred EECCCCCCHHHHHHHHH-HCCeEEEECCCC--CCCCEEEEecC-CHHHHHHHHHHHHHh
Confidence 9997 345677777777 569999998653 34679999986 456667777777654
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=354.44 Aligned_cols=292 Identities=20% Similarity=0.294 Sum_probs=232.2
Q ss_pred CCCeEEeCCCCCC--------C----------------------CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHH
Q 013521 71 DARLIRLGIGDTT--------Q----------------------PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALR 120 (441)
Q Consensus 71 ~~~~i~l~~g~~~--------~----------------------~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr 120 (441)
+.++|+|++|+|+ + .+++.+.+++ +.+.. ......+|++..|..+||
T Consensus 37 g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a~-~~l~~--~~~~~~~Y~~~~G~~~LR 113 (407)
T PLN02368 37 GKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAK-HYLSL--TSGGLGAYSDSRGLPGVR 113 (407)
T ss_pred hhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHHH-HHHhc--CCCCCCCCCCCCCCHHHH
Confidence 4579999999996 2 1344444444 33321 113466899999999999
Q ss_pred HHHHHHHhh--hCCCCCCcEEEcCCcHHHHHH-HHHhc-CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEE
Q 013521 121 TAIADKFYK--DMGIEGDEIFISDGAQSDISR-LQMLL-GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVY 196 (441)
Q Consensus 121 ~~ia~~l~~--~~~~~~~~I~~t~G~~~al~~-l~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~ 196 (441)
++||+|+.+ ++.+++++|++|+|+++++.+ +..++ ++||.|++++|+|+.|...+...| .+++.
T Consensus 114 ~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g------------~~~v~ 181 (407)
T PLN02368 114 KEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLG------------GTLVP 181 (407)
T ss_pred HHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHcC------------CEEEE
Confidence 999999975 555789999999999999987 56676 799999999999999999999999 58999
Q ss_pred eecCCCCCccCCCCC-----C------CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-
Q 013521 197 MNCRPENNFFPDLST-----T------SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS- 264 (441)
Q Consensus 197 v~~~~~~~~~~~~~~-----~------~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~- 264 (441)
++++.+++|..+++. . .++|++++||||||||.++|.+++++|+++|++||++||+||+|.++.+++.
T Consensus 182 v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~ 261 (407)
T PLN02368 182 YYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDER 261 (407)
T ss_pred EecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence 998876666665432 1 1689999999999999999999999999999999999999999999988652
Q ss_pred -CCccccc----CC---CcceeEEEecCCccc-CCccceeEEEEe---eccccccCCchhHHHHHHHHhhhcCCCcHHHH
Q 013521 265 -PRSIYEI----PG---AREVAIEISSFSKFA-GFTGVRLGWTVV---PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQ 332 (441)
Q Consensus 265 -~~~~~~~----~~---~~~~~i~i~S~SK~~-~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (441)
+.++..+ +. ..+++|+++||||.| |+||||+||+++ ++++ ++.+...... ..+++.++|
T Consensus 262 ~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~l--------i~~~~~~~~~-~~~~~~~~Q 332 (407)
T PLN02368 262 PFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT--------VEEIYKVASI-ALSPNVSGQ 332 (407)
T ss_pred CcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHH--------HHHHHHHhcc-cCCCCcHHH
Confidence 3454432 11 134899999999998 899999999995 6666 4555555333 345888999
Q ss_pred HHHHHhcCCCc--------H-HHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcC
Q 013521 333 AGGLACLSPDG--------F-QALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFP 386 (441)
Q Consensus 333 ~a~~~~l~~~~--------~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 386 (441)
.++.+++++.. + ++.+++++.|++|++.+.+.|+++ |+.+..|++|+|+|++++
T Consensus 333 ~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~ 396 (407)
T PLN02368 333 IFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIK 396 (407)
T ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCC
Confidence 99999997431 1 334567899999999999999997 999888899999998775
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=347.42 Aligned_cols=326 Identities=21% Similarity=0.283 Sum_probs=254.7
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~~ 150 (441)
..++|+.|+|++++|+.+.+++.+.+.... .....|+ +.|..+||+++|+|+.+ +.++++++|++|+|+++++.+
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~--~~~~~Y~-~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~ 103 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAA--AGLNRYP-DRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQ 103 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhh--hhhccCC-CCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHH
Confidence 469999999999999999999999876422 2456784 56899999999999976 567899999999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEEEcCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIFFCSP 223 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~i~~p 223 (441)
+..++++||.|+++.|+|+.+...+...| .+++.++.++ ++..+++. ..++++++++||
T Consensus 104 ~~~~~~~~gd~v~v~~P~y~~~~~~~~~~g------------~~~~~~~~~~--~~~~d~~~l~~~~~~~~~~~i~l~~p 169 (368)
T PRK03317 104 LLQAFGGPGRTALGFVPSYSMHPIIARGTH------------TEWVEGPRAA--DFTLDVDAAVAAIAEHRPDVVFLTSP 169 (368)
T ss_pred HHHHhcCCCCEEEEeCCChHHHHHHHHhcC------------CeeEEcccCC--CCCCCHHHHHHHHhccCCCEEEEeCC
Confidence 56678999999999999999999888877 4777776643 33333321 247899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
|||||.+++.+++++|+++| +++||+||+|.+|.+++.+ +...+.+..+++++++||||.+|++|+|+||++++++
T Consensus 170 ~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~~-~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~ 245 (368)
T PRK03317 170 NNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGTP-SALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPA 245 (368)
T ss_pred CCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCCc-CHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHH
Confidence 99999999988888888876 6999999999998765433 2323212234789999999999999999999999888
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWV 383 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 383 (441)
+ ++.+.... ...+++.+.|.++.+++++ .+.+.+.++.++++++.+.+.|+++|+.+.++.+++++|.
T Consensus 246 ~--------~~~l~~~~--~~~~~s~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 313 (368)
T PRK03317 246 V--------VDALRLVR--LPYHLSAVTQAAARAALRH--ADELLASVAALRAERDRVVAWLRELGLRVAPSDANFVLFG 313 (368)
T ss_pred H--------HHHHHhcC--CCCCCCHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEeCCCCCcEEEEe
Confidence 7 35555433 2345789999999999974 2334455677888999999999988988877667777776
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+++ +..++.+.++ ++||.+.+.. .++++||++. +.++++++++.|+++
T Consensus 314 ~~~--~~~~~~~~l~-~~Gv~v~~~~-----~~~~iRi~~~-~~~~~~~~~~~l~~~ 361 (368)
T PRK03317 314 RFA--DRHAVWQGLL-DRGVLIRDVG-----IPGWLRVTIG-TPEENDAFLAALAEV 361 (368)
T ss_pred ccC--CHHHHHHHHH-HCCEEEEeCC-----CCCeEEEecC-CHHHHHHHHHHHHHH
Confidence 664 4556666655 4699998742 2579999985 567788888888765
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=342.64 Aligned_cols=318 Identities=18% Similarity=0.269 Sum_probs=246.5
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
..++++.+++++++++.. . .....|++. +..+||+++|+++ ++++++|++|+|+++++.+ +
T Consensus 32 ~~~~~~~ne~~~~~~~~~-------~------~~~~~Y~~~-~~~~lr~~ia~~~----~~~~~~I~~t~G~~~~l~~~~ 93 (364)
T PRK04781 32 GDVWLNANESAWANPADP-------D------ASTRRYPDP-QPPGLRSALAALY----GCAPEQLLIGRGSDEAIDLLV 93 (364)
T ss_pred CCEEeeCCCCCCCCChhh-------c------chhccCCCC-CHHHHHHHHHHHh----CcChHHEEEeCCHHHHHHHHH
Confidence 368899998877666531 0 233468544 5799999999997 7899999999999999998 5
Q ss_pred HHhcCCC-CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC-CCCccCCCCC------CCCccEEEEcCC
Q 013521 152 QMLLGSN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP-ENNFFPDLST------TSRTDIIFFCSP 223 (441)
Q Consensus 152 ~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~~------~~~~~~v~i~~p 223 (441)
..++.+| |.|++++|+|+.+...++..| .+++.++++. ++++..+++. .++++++++|||
T Consensus 94 ~~~~~~g~~~vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p 161 (364)
T PRK04781 94 RALCVPGRDAVLVTPPVFGMYAVCARLQN------------APLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSP 161 (364)
T ss_pred HHhcCCCCCeEEEcCCChHHHHHHHHHcC------------CEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCC
Confidence 6677888 799999999999988888888 5899999853 3355444321 368899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
|||||.+++.+++++++++|+ ++++||+||+|.+|.+...+.++ . +..+++|+++||||+||+||+|+||+++|++
T Consensus 162 ~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~~~~~--~-~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~ 237 (364)
T PRK04781 162 SNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDVPSAVGL--L-ARYDNLAVLRTLSKAHALAAARIGSLIANAE 237 (364)
T ss_pred CCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCCcchHHH--H-hhCCCEEEEecChhhcccccceeeeeeCCHH
Confidence 999999999999999999985 47899999999998764222122 2 2346899999999999999999999999988
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVW 382 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 382 (441)
+ ++.+...+. ..+.+.++|.++.+++.+..+.+..+.++.++++++.+.+.|+++ ++....+++|+|+|
T Consensus 238 l--------~~~l~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~ 307 (364)
T PRK04781 238 L--------IAVLRRCQA--PYPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLL 307 (364)
T ss_pred H--------HHHHHhccC--CCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEE
Confidence 7 455655443 345788899999999986555555666678899999999999988 66433457899999
Q ss_pred EEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 383 VQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 383 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
++++ +..++.+.+ +++||.|+||..|.. .++|+||+++ .+++.+++++.|++
T Consensus 308 ~~~~--~~~~~~~~l-~~~gI~v~~~~~~~~-~~~~~Ris~~-~~~~~~~l~~al~~ 359 (364)
T PRK04781 308 VRFD--DAEAAFQAL-LAAGVVVRDQRAAPR-LSDALRITLG-TPEQNDRVLAALQR 359 (364)
T ss_pred EEcC--CHHHHHHHH-HHCCeEEeeCCCCCC-CCCeEEEeCC-CHHHHHHHHHHHHH
Confidence 9997 455665655 466999999987753 4679999985 45566666666654
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=343.33 Aligned_cols=329 Identities=22% Similarity=0.355 Sum_probs=261.9
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
++.++++|+.|.+++.+++.+.+++.+.+.. ..+|++. +..++|+++|+++ ++++++|++|+|+++++.
T Consensus 30 ~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~------~~~y~~~-~~~~lr~~ia~~~----~~~~~~i~~t~G~~~~l~ 98 (367)
T PRK02731 30 GIADIIKLASNENPLGPSPKAIEAIRAAADE------LHRYPDG-SGFELKAALAEKF----GVDPERIILGNGSDEILE 98 (367)
T ss_pred CCCceEEecCCCCCCCCCHHHHHHHHHHHHh------hcCCCCC-cHHHHHHHHHHHh----CcCHHHEEEcCCHHHHHH
Confidence 3457999999998888888899999987643 3468654 4579999999997 788999999999999998
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNN 225 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~N 225 (441)
+ +..++++||.|++++|+|+.+...+...| .+++.++.+. ..++.+ ++. .+++++|+++||||
T Consensus 99 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~-~~~~~~~l~~~~~~~~~~v~l~~p~n 165 (367)
T PRK02731 99 LLARAYLGPGDEVIYSEHGFAVYPIAAQAVG------------AKPVEVPAKD-YGHDLDAMLAAVTPRTRLVFIANPNN 165 (367)
T ss_pred HHHHHhcCCCCEEEEecCCHHHHHHHHHHcC------------CeEEEecccC-CCCCHHHHHHHhCCCCcEEEEeCCCC
Confidence 7 46678999999999999999888888888 5888888743 222211 211 35789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
|||.+++.+++++|++.|+ ++++||+||+|.++.+++. ..++..+ +..+++++++||||.+|++|+|+||+++++++
T Consensus 166 ptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~ 243 (367)
T PRK02731 166 PTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELV-AKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEI 243 (367)
T ss_pred CCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHH-hhcCCEEEEeeehHhhcCcccceeeeeCCHHH
Confidence 9999999999999998875 6999999999998877543 2233222 23467899999999999999999999999877
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQ 384 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 384 (441)
.+.+..... ....+.++|.++.+++++ ..++++.++.++++++.+.+.|++.|+.+.+ ++|+|+|++
T Consensus 244 --------~~~l~~~~~--~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~g~~~~i~ 310 (367)
T PRK02731 244 --------IDALNRVRQ--PFNVNSLALAAAVAALDD--DAFVEKSRALNAEGMAWLTEFLAELGLEYIP-SVGNFILVD 310 (367)
T ss_pred --------HHHHHHccC--CCCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCCccCC-CCceEEEEE
Confidence 355554432 234678999999999974 4567888999999999999999998887764 578999999
Q ss_pred cC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 385 FP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 385 ~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++ ..++.++.+.|.+ +||.+.|+..|+ .+++||+++. +.++++.+++.|++++
T Consensus 311 ~~~~~~~~~~~~~L~~-~gI~v~~~~~~~--~~~~iRis~~-~~~e~~~l~~aL~~~~ 364 (367)
T PRK02731 311 FDDGKDAAEAYQALLK-RGVIVRPVAGYG--LPNALRITIG-TEEENRRFLAALKEFL 364 (367)
T ss_pred CCCCCCHHHHHHHHHH-CCEEEEeCCCCC--CCCeEEEecC-CHHHHHHHHHHHHHHH
Confidence 96 3456777777665 599999998875 3579999985 6788899999988753
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=334.65 Aligned_cols=306 Identities=17% Similarity=0.233 Sum_probs=240.8
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQSDISR 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~~al~~ 150 (441)
.++++|+.+++++++|+....+ ..+ ..|+. .. .+||+++|+++ +++ +++|++|+|+++++.+
T Consensus 24 ~~~i~ls~Nenp~~~~~~~~~~--~~~---------~~Yp~-~~-~~L~~~ia~~~----~~~~~~~I~i~~Gs~e~i~~ 86 (339)
T PRK06959 24 DAWLDLSTGINPHGYPVPPVPA--DAW---------RRLPE-DD-DGLAACAARYY----GAPDAAHVLPVAGSQAAIRA 86 (339)
T ss_pred hhhceeccCCCCCCCCCCCCCH--HHH---------HhCCC-ch-HHHHHHHHHHh----CCCCcccEEECcCHHHHHHH
Confidence 3579999999887665222111 112 24753 34 89999999996 775 5899999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccC
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHA 230 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~ 230 (441)
+..++++|| |++++|+|+.|...++..| .+++.++.+.+ . +. ..++++++||||||||.+
T Consensus 87 l~~~~~~g~-v~v~~P~y~~y~~~~~~~g------------~~~~~v~~~~~-~----~~--~~~~~v~l~nPnNPTG~~ 146 (339)
T PRK06959 87 LPALLPRGR-VGIAPLAYSEYAPAFARHG------------HRVVPLDEAAD-T----LP--AALTHLIVVNPNNPTAER 146 (339)
T ss_pred HHHhcCCCe-EEEcCCCcHHHHHHHHHCC------------CEEEeecccch-h----cc--ccCCEEEEeCCCCCCCCC
Confidence 767788887 8889999999999999998 57888877541 1 11 245789999999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCc
Q 013521 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY 310 (441)
Q Consensus 231 ~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~ 310 (441)
+|.+++++|++.|.+++.++|+||+|.+|... .++..+.+ .+++|+++||||.||+||+|+||+++++++
T Consensus 147 ~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~---~s~~~~~~-~~~vi~l~SfSK~~gl~GlRiGy~v~~~~l------ 216 (339)
T PRK06959 147 LPAARLLRWHAQLAARGGTLIVDEAFADTLPA---ASLAAHTD-RPGLVVLRSVGKFFGLAGVRAGFVLAAPAL------ 216 (339)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCCccCCCc---ccchhccC-CCCEEEEecChhhcCCcchheEEEecCHHH------
Confidence 99999999999999999999999999998643 33444432 356899999999999999999999999887
Q ss_pred hhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCCh
Q 013521 311 PVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSS 390 (441)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (441)
++.+..... .++++.++|.++.++|++. .+.++.++.++++++.+.+.|+++|+.+. .+++|+|++++ +.
T Consensus 217 --i~~l~~~~~--~~~vs~~~q~a~~~~L~~~--~~~~~~~~~~~~~r~~l~~~L~~~g~~~~--~~~~f~~~~~~--~~ 286 (339)
T PRK06959 217 --LAALRDALG--AWTVSGPARHAVRAAFADA--AWQAAMRERLAADGARLAALLRAHGFAVH--ATPLFSWTDDP--RA 286 (339)
T ss_pred --HHHHHHhcC--CCCCcHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHCCCCcc--CcceEEEEeCC--CH
Confidence 466665543 3447889999999999753 45688899999999999999999887765 36799999986 45
Q ss_pred HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 391 WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 391 ~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
.++...+++ +||.|+. |+ ..+++||++..++++.+++++.|+++
T Consensus 287 ~~l~~~l~~-~GI~vr~---~~--~~~~lRisi~~~~~e~~~l~~al~~~ 330 (339)
T PRK06959 287 AALHAALAR-RGIWTRY---FA--PPPSVRFGLPADEAEWQRLEDALAEC 330 (339)
T ss_pred HHHHHHHHh-CCeEEEE---CC--CCCeEEEECCCCHHHHHHHHHHHHHH
Confidence 567776665 5999974 42 24699999866777888888877764
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=334.50 Aligned_cols=321 Identities=21% Similarity=0.335 Sum_probs=247.4
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
..++|+.|++++++|+.+++++.+.+.. ....+|++ .+..++|+++|+|+ ++++++|++|+|+++++.+ +
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~----~~~~~y~~-~~~~~lr~~ia~~~----~~~~~~i~it~G~~~~l~~~~ 93 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVKS----SQVNIYPD-PTAEKLREELARYC----SVVPTNIFVGNGSDEIIHLIM 93 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhhc----CcccCCCC-ccHHHHHHHHHHHh----CCCcccEEEecCHHHHHHHHH
Confidence 4689999999999999999999887753 34567864 45799999999996 7899999999999999997 5
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC---CCCccEEEEcCCCCcc
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST---TSRTDIIFFCSPNNPT 227 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~---~~~~~~v~i~~p~NPt 227 (441)
..++++||+|++++|+|+.+...++..| .+++.++.+++.+++++ +++ ..++++++++||||||
T Consensus 94 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPt 161 (351)
T PRK14807 94 LAFINKGDVVIYPHPSFAMYSVYSKIAG------------AVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPT 161 (351)
T ss_pred HHhcCCCCEEEEeCCChHHHHHHHHHcC------------CeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCC
Confidence 6678999999999999999988888888 58888888653333221 111 2488999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS 307 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~ 307 (441)
|.+++.+++++++ ++++.++|+||+|.++. +....++ ++ ..+++|+++||||.+|+||+|+||+++++++
T Consensus 162 G~~~~~~~l~~l~---~~~~~~~ivDe~y~~~~-~~~~~~~--~~-~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~--- 231 (351)
T PRK14807 162 GSVIEREDIIKII---EKSRGIVVVDEAYFEFY-GNTIVDV--IN-EFENLIVLRTLSKAFGLAGLRVGYAVANENI--- 231 (351)
T ss_pred CCCCCHHHHHHHH---HhCCCEEEEeCcchhhc-ccchHHH--hh-hCCCEEEEecchHhcccchhceeeeecCHHH---
Confidence 9999976666665 46678899999999874 3222222 21 2467999999999999999999999998887
Q ss_pred CCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcC
Q 013521 308 NGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFP 386 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 386 (441)
++.+...+. ...++.+.|.++.+++++ .++++..+.++++++.+.+.|++. |+.+.+ ++|+|+|++++
T Consensus 232 -----~~~~~~~~~--~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~-~~~~~~~i~~~ 300 (351)
T PRK14807 232 -----LKYLNLVKS--PYNINSLSQVIALKVLRT---GVLKERVNYILNERERLIKELSKIPGIKVYP-SKTNFILVKFK 300 (351)
T ss_pred -----HHHHHHccC--CCCcCHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCcEECc-CCccEEEEEcC
Confidence 455554433 244788999999999974 245667778888999999999876 887754 57889999997
Q ss_pred CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 387 GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 387 ~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
++.++.+.++ ++||.|.++..+. ..++++||+++ ++++.+.+++.|+++
T Consensus 301 --~~~~~~~~l~-~~gV~v~~~~~~~-~~~~~iRis~~-~~~~~~~l~~~l~~~ 349 (351)
T PRK14807 301 --DADYVYQGLL-ERGILVRDFSKVE-GLEGALRITVS-SCEANDYLINGLKEL 349 (351)
T ss_pred --CHHHHHHHHH-HCCEEEEECCCCC-CCCCeEEEEcC-CHHHHHHHHHHHHHh
Confidence 3555656655 4599998865322 34679999985 456667777777665
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=339.99 Aligned_cols=317 Identities=20% Similarity=0.276 Sum_probs=248.1
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL 151 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l 151 (441)
.+.++|+.|++++++++.+ .. .....|++ .+..+||+++|+++ ++++++|++|+|+++++.++
T Consensus 31 ~~~~~l~~ne~~~~~~~~~------~~------~~~~~Yp~-~~~~~Lr~aia~~~----~~~~~~I~it~Gs~~~i~~~ 93 (354)
T PRK04635 31 RGDIWINANESPFNNEYKL------DL------ARLNRYPE-CQPPELINAYSAYA----GVAPEQILTSRGADEAIELL 93 (354)
T ss_pred CCcEEeeCCCCCCCCChhh------hh------HHhccCCC-CCHHHHHHHHHHHh----CcCHHHEEEeCCHHHHHHHH
Confidence 3569999999998877542 11 22346854 46899999999986 89999999999999999985
Q ss_pred -HHhcCCC-CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCCCCCccEEEEcCCCCccc
Q 013521 152 -QMLLGSN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LSTTSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 152 -~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~v~i~~p~NPtG 228 (441)
..++++| |+|+++.|+|+.|...++..| .+++.+|++.+..++.+ ++..+++++|++||||||||
T Consensus 94 ~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g------------~~v~~v~~~~~~~~~~~~l~~~~~~~li~i~nP~NPTG 161 (354)
T PRK04635 94 IRAFCEPGQDSIACFGPTYGMYAISAETFN------------VGVKALPLTADYQLPLDYIEQLDGAKLVFICNPNNPTG 161 (354)
T ss_pred HHHhcCCCCCeEEEcCCChHHHHHHHHHcC------------CEEEEEecCCCCCCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 5677888 899999999999988888888 58999998643232222 12236899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccC
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN 308 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~ 308 (441)
.++|.+++++|+++|+ +++||+||+|.+|.... +..++....+++++++||||.+|+||+|+||+++++++
T Consensus 162 ~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~~---s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~---- 232 (354)
T PRK04635 162 TVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPEY---SVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEEL---- 232 (354)
T ss_pred ccCCHHHHHHHHHhCC--CcEEEEeCchHhhccCc---chHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHH----
Confidence 9999999999998876 49999999999886432 23232223467899999999999999999999999887
Q ss_pred CchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCceEEEEEcCC
Q 013521 309 GYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-LKVNGGKNAPYVWVQFPG 387 (441)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~ 387 (441)
++.+..... ..+.+.+.|.++.+++.+.+.+++++.++.++++++.+.+.|++++ +.+.++ +|+|+|++++
T Consensus 233 ----~~~l~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~g~f~~~~~~- 304 (354)
T PRK04635 233 ----IEILMRVIA--PYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLEG-NGNYVLAKFD- 304 (354)
T ss_pred ----HHHHHhhcC--CCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCC-CCcEEEEECC-
Confidence 345544322 3446778888889999866666778888999999999999999884 777654 6889999987
Q ss_pred CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 388 SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 388 ~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
+..++.+ +++++||.++++..+ ..++++|||+ +++++++.++++|++
T Consensus 305 -~~~~~~~-~l~~~gv~v~~~~~~--~~~~~lRis~-~~~e~~~~l~~al~~ 351 (354)
T PRK04635 305 -DVDAVFK-ALWDAGIVARAYKDP--RLANCIRFSF-SNRAETDKLIGLIRN 351 (354)
T ss_pred -CHHHHHH-HHHHCCEEEEECCCC--CCCCeEEEEe-CCHHHHHHHHHHHHH
Confidence 3455554 455679999875432 2467999997 468899999999876
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=339.21 Aligned_cols=316 Identities=20% Similarity=0.320 Sum_probs=249.4
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
..++|+.|++++++|+.+ .. .....| |+....++++++++++ ++++++|++|+|+++++.+ +
T Consensus 29 ~~~~l~~Nenp~~~~~~~----~~--------~~~~~Y-p~~~~~~l~~~~a~~~----g~~~~~I~~~~Gs~e~i~~~~ 91 (351)
T PRK01688 29 GDVWLNANEYPTAVEFQL----TQ--------QTLNRY-PECQPKAVIENYAAYA----GVKPEQVLVSRGADEGIELLI 91 (351)
T ss_pred CceEecCCCCCCCCChhh----cc--------cccccC-CCCChHHHHHHHHHHh----CCCHHHEEEcCCHHHHHHHHH
Confidence 469999999998877642 10 234567 4445689999999986 8999999999999999998 4
Q ss_pred HHhcCCC-CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC----CCCccEEEEcCCCCc
Q 013521 152 QMLLGSN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST----TSRTDIIFFCSPNNP 226 (441)
Q Consensus 152 ~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~----~~~~~~v~i~~p~NP 226 (441)
..++++| |.|+++.|+|+.|...++..| .+++.++++++ +..+++. ..++++|++||||||
T Consensus 92 ~~~~~~g~~~vli~~P~y~~y~~~~~~~G------------~~~~~v~~~~~--~~~d~~~l~~~~~~~~lv~l~nPnNP 157 (351)
T PRK01688 92 RAFCEPGKDAILYCPPTYGMYSVSAETIG------------VEIRTVPTLDN--WQLDLPAIADNLDGVKVVYVCSPNNP 157 (351)
T ss_pred HHhcCCCCCEEEEcCCCHHHHHHHHHHcC------------CEEEEeecCCC--CCCCHHHHHHhccCCcEEEEeCCCCC
Confidence 6677887 899999999999999999998 58888888643 4444322 258899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
||.+++.+++++|++.|++ +.+||+||+|.+|.... +...+....+++++++||||.||++|+|+||+++++++
T Consensus 158 TG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~---s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~-- 231 (351)
T PRK01688 158 TGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQA---SLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEV-- 231 (351)
T ss_pred CCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCC---ChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHH--
Confidence 9999999999999999976 68899999999987432 22222123468999999999999999999999999887
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEc
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQF 385 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 385 (441)
++.+..... .+.++.+.|.++.++|.+.+.+++++.++.++++++.+.+.|+++ ++....+++++|+|+++
T Consensus 232 ------i~~l~~~~~--~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~ 303 (351)
T PRK01688 232 ------INLLLKVIA--PYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARF 303 (351)
T ss_pred ------HHHHHhccC--CCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEc
Confidence 355554332 234777888888888876555678888899999999999999988 66534457899999998
Q ss_pred CCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHH
Q 013521 386 PGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLK 438 (441)
Q Consensus 386 ~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~ 438 (441)
+ +..++.+.|++ +||.++++..|. ..++++||++. ++++++.+++.|+
T Consensus 304 ~--~~~~l~~~L~~-~gi~vr~~~~~~-~~~~~iRis~~-~~~e~~~l~~al~ 351 (351)
T PRK01688 304 T--ASSAVFKSLWD-QGIILRDQNKQP-GLSNCLRITIG-TREECQRVIDALR 351 (351)
T ss_pred C--CHHHHHHHHHH-CCeEEEECCCcC-CCCCeEEEeCC-CHHHHHHHHHhhC
Confidence 6 45677777775 599999876553 23679999986 6788899888773
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=336.07 Aligned_cols=321 Identities=23% Similarity=0.414 Sum_probs=259.9
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.++|+|++|++++++|+.+.+++.+++.. ..+|++..+ .++|+++|+++ ++++++|++|+|+++++..
T Consensus 19 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~------~~~y~~~~~-~~lr~~ia~~~----~~~~~~i~~~~G~~~~l~~~ 87 (346)
T TIGR01141 19 KEVIKLNSNENPFGPPPKAKEALRAEADK------LHRYPDPDP-AELKQALADYY----GVDPEQILLGNGSDEIIELL 87 (346)
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHhHHH------hhcCCCCCH-HHHHHHHHHHh----CcChHHEEEcCCHHHHHHHH
Confidence 47999999999999999999999987632 246766555 89999999997 6888999999999999986
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEcCCCC
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFCSPNN 225 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~~p~N 225 (441)
+..++++||+|++++|+|+.+...+...| .+++.++++.++ ..+++ + .+++++|++++|+|
T Consensus 88 ~~~l~~~gd~v~~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~--~~d~~~l~~~~~~~~~~v~l~~p~N 153 (346)
T TIGR01141 88 IRAFLEPGDAVLVPPPTYSMYEISAKIHG------------AEVVKVPLDEDG--QLDLEDILVAIDDKPKLVFLCSPNN 153 (346)
T ss_pred HHHhcCCCCEEEEcCCCHHHHHHHHHHcC------------CeEEEeccCCCC--CCCHHHHHHhcCCCCCEEEEeCCCC
Confidence 56778999999999999999888888888 588889887642 23322 1 36789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~ 305 (441)
|||.++|.++++++++.|+ +++++|+||+|.++.....+.+... ..+++++++|+||.+|++|+|+||+++++++
T Consensus 154 ptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~~~~~---~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~- 228 (346)
T TIGR01141 154 PTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTLPLLA---EYPNLIVLRTLSKAFGLAGLRIGYAIANAEI- 228 (346)
T ss_pred CCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCccHHHHHh---hCCCEEEEehhhHhhhchhhhceeeecCHHH-
Confidence 9999999999999999887 7999999999997765432222221 1246899999999998899999999998876
Q ss_pred ccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEE
Q 013521 306 YSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQ 384 (441)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 384 (441)
.+.+..... ..+.+.++|.++.+++++. .++++.+++++++++.+.+.|+++ |+++.+ .+|+|+|++
T Consensus 229 -------~~~~~~~~~--~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~g~~~~~~ 296 (346)
T TIGR01141 229 -------IDALNKVRA--PFNLSRLAQAAAIAALRDD--DFIEKTVEEINAERERLYDGLKKLPGLEVYP-SDANFVLIR 296 (346)
T ss_pred -------HHHHHhccC--CCCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCEECC-CcCCEEEEe
Confidence 355554332 2446889999998888753 367888999999999999999988 888654 578999999
Q ss_pred cCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHH
Q 013521 385 FPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLK 438 (441)
Q Consensus 385 ~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~ 438 (441)
++. ++.++.+.|.+ +||.+.||+.|+.. ++++|+++. ++++++++++.|+
T Consensus 297 ~~~-~~~~~~~~L~~-~gI~v~~g~~f~~~-~~~iRls~~-~~~~i~~~~~~l~ 346 (346)
T TIGR01141 297 FPR-DADALFEALLE-KGIIVRDLNSYPGL-PNCLRITVG-TREENDRFLAALR 346 (346)
T ss_pred cCC-CHHHHHHHHHH-CCeEEEeCCCcCCC-CCeEEEecC-CHHHHHHHHHHhC
Confidence 986 66777777665 59999999988644 789999975 7889999998774
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=329.40 Aligned_cols=304 Identities=19% Similarity=0.242 Sum_probs=233.3
Q ss_pred CeEEeCCCCCCCCCc-HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH
Q 013521 73 RLIRLGIGDTTQPIP-DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~-~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l 151 (441)
++++|+.|++++++| +.+.+ ..+. .|+. +..+||++||+++ + +++|++|+|+++++.++
T Consensus 21 ~~i~l~~ne~p~~~~~~~~~~---~~~~---------~yp~--~~~~Lr~~ia~~~----~--~~~I~it~Gs~~al~~~ 80 (330)
T PRK05664 21 DWLDLSTGIAPWPWPVPAIPA---DAWA---------RLPE--TDDGLEAAARAYY----G--APQLLPVAGSQAAIQAL 80 (330)
T ss_pred HheeecCCcCCCCCCCcccCH---HHHH---------hCCC--ChHHHHHHHHHHh----C--CCCEEECcCHHHHHHHH
Confidence 579999998776544 22211 2222 3643 3489999999997 3 47999999999999986
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCC
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAA 231 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~ 231 (441)
. .+.+||+|++++|+|+.+...++..| .+++.++.+.. .. ...+++++++||||||||.++
T Consensus 81 ~-~~~~gd~v~v~~P~y~~~~~~~~~~g------------~~~~~v~~~~~---~~---~~~~~~~v~l~nP~NPTG~~~ 141 (330)
T PRK05664 81 P-RLRAPGRVGVLSPCYAEHAHAWRRAG------------HQVRELDEAEV---EA---ALDSLDVLVVVNPNNPTGRRF 141 (330)
T ss_pred H-HccCCCEEEEcCCChHHHHHHHHHcC------------CeEEEechhhH---hh---hhcCCCEEEEeCCcCCCCCcc
Confidence 4 35899999999999999999999999 58888887421 11 124678899999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCch
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYP 311 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~ 311 (441)
|.+++++|+++|++++++||+||+|.++.. ..++..++ ..+++++++||||.+|+||+|+||+++|+++
T Consensus 142 s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~---~~s~~~~~-~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l------- 210 (330)
T PRK05664 142 DPARLLAWHARLAARGGWLVVDEAFMDNTP---QHSLAACA-HRPGLIVLRSFGKFFGLAGARLGFVLAEPAL------- 210 (330)
T ss_pred CHHHHHHHHHHHHhcCCEEEEECCcccCCC---cccccccc-cCCCEEEEeeccccccCCCcceEEEEeCHHH-------
Confidence 999999999999999999999999987652 13455554 2468999999999999999999999999887
Q ss_pred hHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChH
Q 013521 312 VIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSW 391 (441)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (441)
++.+..... ....+.+.|.++.++|.+. .+.++.++.++++++.+.+.|+++|+...+ ..++|+|++++ ++.
T Consensus 211 -~~~~~~~~~--~~~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~f~~~~~~--~~~ 282 (330)
T PRK05664 211 -LRALAELLG--PWTVSGPTRWLAQAALADT--PWQRRQRERLLAASQRLAALLRRHGLTPAG-GCALFQWVRTE--DAA 282 (330)
T ss_pred -HHHHHHhcC--CCCCCHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHHHCCCcccC-CcceEEEEecC--CHH
Confidence 455554432 2347888999999999753 445788999999999999999998765322 23478888875 456
Q ss_pred HHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 392 DVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 392 ~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
++.+.+. ++||.|.+ |+ ..+++||+++.++++.+++++.|+++
T Consensus 283 ~~~~~l~-~~gi~v~~---f~--~~~~iRis~~~~~~~~~~l~~al~~~ 325 (330)
T PRK05664 283 ALHEFLA-RRGILTRL---FE--QPASLRFGLPADEADWARLDQALLAY 325 (330)
T ss_pred HHHHHHH-HCCeEEEE---CC--CCCeEEEECCCCHHHHHHHHHHHHHH
Confidence 6666655 55999974 54 35799999975566666666666543
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=315.92 Aligned_cols=316 Identities=22% Similarity=0.317 Sum_probs=266.1
Q ss_pred CCCCCCCCcCcHHHHHHHHHHHhh----hCCCCCCcEEEcCCcHHHHHHH-HHhcCCCCEEEEeCCCchhhHhHHHHhcc
Q 013521 106 GYKGYGAEQGNMALRTAIADKFYK----DMGIEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDTSVIVGQ 180 (441)
Q Consensus 106 ~~~~Y~~~~g~~~lr~~ia~~l~~----~~~~~~~~I~~t~G~~~al~~l-~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~ 180 (441)
.+..|++..|..++|+++|+++.+ ....+|+++++|+|++++.+++ +.|.+|||..++++|-|+++..-++....
T Consensus 113 ~la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTg 192 (471)
T KOG0256|consen 113 ELAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTG 192 (471)
T ss_pred hHhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccC
Confidence 344688888999999999999964 3446899999999999999985 77789999999999999999776665432
Q ss_pred ccccccccCccceeEEeecCCCCCccCCCCC-----------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcE
Q 013521 181 AGKFLKETGKYRNIVYMNCRPENNFFPDLST-----------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSI 249 (441)
Q Consensus 181 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ 249 (441)
++++++.+...++|..+.++ ..++|.|+|+||+||.|.+++++++..++++|.++++.
T Consensus 193 -----------veivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniH 261 (471)
T KOG0256|consen 193 -----------VEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIH 261 (471)
T ss_pred -----------ceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceE
Confidence 69999999988888776432 36899999999999999999999999999999999999
Q ss_pred EEEcccccccccCCC-CCcccccCC----CcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhc
Q 013521 250 IVYDSAYAAYITDPS-PRSIYEIPG----AREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCF 324 (441)
Q Consensus 250 ii~De~~~~~~~~~~-~~~~~~~~~----~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (441)
+|+||+|+.-+|+.. ..|++++.. .++++.++.|+||-+|+||+|+|.+...++.+ .....+ ...+
T Consensus 262 vI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~V-------vsaA~k--mssf 332 (471)
T KOG0256|consen 262 VISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDV-------VSAATK--MSSF 332 (471)
T ss_pred EEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHH-------HHHHHH--Hhhc
Confidence 999999998888754 566665421 46889999999999999999999999988775 333333 3345
Q ss_pred CCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC-------CChHHHHH
Q 013521 325 NGASNIVQAGGLACLSPDGF--QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG-------SSSWDVFA 395 (441)
Q Consensus 325 ~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 395 (441)
..+|...|..+..+|.|..+ .+++...++++.+.+++.+.|+++||.+.+..+|.|+|+++.. ..+.++.+
T Consensus 333 ~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~ 412 (471)
T KOG0256|consen 333 GLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWE 412 (471)
T ss_pred cCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHH
Confidence 56899999999999997655 5789999999999999999999999999998999999999862 12346788
Q ss_pred HHHHhcCeEEeCCCCcCCCCCCeEEEEeecCH-HHHHHHHHHHHhhC
Q 013521 396 EILEKTHILTIPGSGFGPGGNEHIRVSAFGHR-EYISEACRRLKNFL 441 (441)
Q Consensus 396 ~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~-~~~~~~l~~l~~~l 441 (441)
+++.+-++.+.||+.|....++|+|++|++.. +.++-+++||++++
T Consensus 413 ~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~ 459 (471)
T KOG0256|consen 413 RILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFL 459 (471)
T ss_pred HHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHH
Confidence 88988899999999999989999999998754 44555999998763
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=333.68 Aligned_cols=320 Identities=23% Similarity=0.346 Sum_probs=251.6
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEE-cCCcHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFI-SDGAQSDISR 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~-t~G~~~al~~ 150 (441)
.++++|++|++++++++.+.+++.+.+.. ...|++. ...++|+++|+|+ ++++++|++ |+|+++++.+
T Consensus 34 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~------~~~y~~~-~~~~lr~~ia~~~----~~~~~~i~~~~~Ga~~~i~~ 102 (361)
T PRK00950 34 ESIIKLGSNENPLGPSPKAVEAIEKELSK------IHRYPEP-DAPELREALSKYT----GVPVENIIVGGDGMDEVIDT 102 (361)
T ss_pred cceEEccCCCCCCCCCHHHHHHHHHHHHh------hcCCCCC-CHHHHHHHHHHHh----CCCHHHEEEeCCCHHHHHHH
Confidence 47999999999888888899998887653 2357554 4599999999997 788999999 8999999987
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPN 224 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~ 224 (441)
+..++++||.|++++|+|+.+...++..| .+++.++.+.+ +..+++. .++++++++++||
T Consensus 103 ~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~v~~~~p~ 168 (361)
T PRK00950 103 LMRTFIDPGDEVIIPTPTFSYYEISAKAHG------------AKPVYAKREED--FSLDVDSVLNAITEKTKVIFLCTPN 168 (361)
T ss_pred HHHHhcCCCCEEEEcCCChHHHHHHHHHcC------------CEEEEeecCCC--CCcCHHHHHHHhccCCCEEEEeCCC
Confidence 56667999999999999999988888888 58888885433 3333222 2578999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.++|.+++++ +|+++|+++|+||+|.+|.. ....++. ...+++++++||||.+|+||+|+||+++++++
T Consensus 169 nptG~~~~~~~l~~---l~~~~~~~li~De~y~~~~~-~~~~~~~---~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~ 241 (361)
T PRK00950 169 NPTGNLIPEEDIRK---ILESTDALVFVDEAYVEFAE-YDYTPLA---LEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWL 241 (361)
T ss_pred CCCCCCcCHHHHHH---HHHHCCcEEEEECchhhhCc-cchHHHH---HhcCCEEEEEeehHhhcCchhhcchhcCCHHH
Confidence 99999999665554 55678999999999998762 2122221 12367899999999999999999999999887
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQ 384 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 384 (441)
++.+..... ..+.+.+.|.++.+++.+ ..++++.++.++++++.+.+.|+ +.+. +++++|+|++
T Consensus 242 --------~~~~~~~~~--~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~l~---~~~~-~~~~~~i~~~ 305 (361)
T PRK00950 242 --------IDYYMRAKT--PFSLTRLSQAAAIAALSD--KEYIEKSIEHGIKSREYLYNELP---FKVY-PSEANFVLVD 305 (361)
T ss_pred --------HHHHHHhcC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhhcC---eeEC-CCcceEEEEE
Confidence 345554332 234778899888888874 35567888888888888888776 4544 4688999999
Q ss_pred cCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 385 FPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 385 ~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+++.++.++.+.++++ ||.+.||..|...++++|||+++ +.+++++++++|++++
T Consensus 306 ~~~~~~~~~~~~l~~~-gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L~~il 360 (361)
T PRK00950 306 VTPMTAKEFCEELLKR-GVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEILKEIV 360 (361)
T ss_pred CCCCCHHHHHHHHHHC-CEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHHHHHh
Confidence 9765677888887765 99999999887656789999986 6678999999998764
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=327.23 Aligned_cols=311 Identities=22% Similarity=0.345 Sum_probs=235.6
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL 151 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l 151 (441)
.++++|+.|++++++|+.+.+++.+++.. ....+|+ ..|..++|+++|+|+ ++++++|++|+|+++++.++
T Consensus 18 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~-~~g~~~lr~~ia~~~----~~~~~~I~~t~G~~~~l~~~ 88 (337)
T PRK03967 18 NYRIWLDKNENPFDLPEELKEEIFEELKR----VPFNRYP-HITSDPLREAIAEFY----GLDAENIAVGNGSDELISYL 88 (337)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHhhc----CccccCC-CCCHHHHHHHHHHHh----CcCcceEEEcCCHHHHHHHH
Confidence 35799999999998889999999888753 2355785 579999999999997 68999999999999999986
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC-CCCccEEEEcCCCCcccc
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST-TSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~-~~~~~~v~i~~p~NPtG~ 229 (441)
...+ +||.|+++.|+|+.+...++..| .+++.++.+.+..++++ ++. ..++++++++|||||||.
T Consensus 89 ~~~~-~gd~V~v~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~v~~~~P~NPtG~ 155 (337)
T PRK03967 89 VKLF-EGKHIVITPPTFGMYSFYAKLNG------------IPVIDVPLKEDFTIDGERIAEKAKNASAVFICSPNNPTGN 155 (337)
T ss_pred HHHh-CCCeEEEeCCChHHHHHHHHHcC------------CeEEEeecCCCCCcCHHHHHHhccCCCEEEEeCCCCCCCC
Confidence 5555 79999999999999988888888 58888888643222221 111 357899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~ 309 (441)
+++.+++.+++ +++++||+||+|.+|.... ..++ . +..+++|+++||||.||+||+|+||+++++++
T Consensus 156 ~~~~~~l~~i~----~~~~~ii~De~y~~~~~~~-~~~~--~-~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~----- 222 (337)
T PRK03967 156 LQPEEEILKVL----ETGKPVVLDEAYAEFSGKS-LIGL--I-DEYPNLILLRTFSKAFGLAGIRAGYAIANEEI----- 222 (337)
T ss_pred CCCHHHHHHHH----hcCCEEEEECchhhhcccc-hHHH--H-hhCCCEEEEecchHhhcchhhhheeeecCHHH-----
Confidence 99976666554 4799999999999876321 1122 1 22467999999999999999999999998877
Q ss_pred chhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCC
Q 013521 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSS 389 (441)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 389 (441)
++.+..... ..+++.++|.++.+++++ .++..+.++.+.++++.+.+.|.+.. .+++++|+|++++
T Consensus 223 ---i~~~~~~~~--~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~~~~~~~~~~--- 288 (337)
T PRK03967 223 ---IDALYRIKP--PFSLNILTMKIVRLALDH--YDLIEERIDYIIKERERVRRELGEYA----YPSDANFLLLKLD--- 288 (337)
T ss_pred ---HHHHHhhcC--CCCCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHhccCc----CCCCCcEEEEhHH---
Confidence 455655443 235789999999988874 33455555666777888888887642 3578999999873
Q ss_pred hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHHHHHH
Q 013521 390 SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEACRRLK 438 (441)
Q Consensus 390 ~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l~~l~ 438 (441)
+.+.+++ +||.++++.. ..++++||+++. +.+.+.++++++.
T Consensus 289 ---~~~~l~~-~gi~v~~~~~---~~~~~~Ri~~~~~~~~~~l~~~l~~~~ 332 (337)
T PRK03967 289 ---AYDYLLE-NGIVVRKLSG---RLEGHIRVTVGKREENDEFIKALKEIK 332 (337)
T ss_pred ---HHHHHHH-CCEEEEeCCC---CCCCeEEEecCCHHHHHHHHHHHHHHH
Confidence 5566665 5999998642 246799999865 2344555555543
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=324.50 Aligned_cols=314 Identities=21% Similarity=0.299 Sum_probs=247.8
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+++.++|+.|.++.++| ..+... ..+.+|+++.+ .++|+++|+++ ++++++|++|+|+++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~---------~~~~~y~~~~~-~~lr~~la~~~----~~~~~~i~~t~G~~~~i~~ 79 (330)
T TIGR01140 16 PEDWLDFSTGINPLGPP--VPPIPA---------SAWARYPDPEY-DELRAAAAAYY----GLPAASVLPVNGAQEAIYL 79 (330)
T ss_pred hhheeEccccCCCCCCC--hhhcch---------HHHhhCCCccH-HHHHHHHHHHh----CCChhhEEECCCHHHHHHH
Confidence 45689999999887765 111111 33457866655 99999999997 7889999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccC
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHA 230 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~ 230 (441)
+..++.+| .|++++|+|..+...+...| .+++.++ +.+ .+... ..+++++++++||||||.+
T Consensus 80 ~~~~l~~g-~vl~~~p~y~~~~~~~~~~g------------~~~~~~~-d~~-~l~~~---~~~~~~v~i~~p~NPtG~~ 141 (330)
T TIGR01140 80 LPRLLAPG-RVLVLAPTYSEYARAWRAAG------------HEVVELP-DLD-RLPAA---LEELDVLVLCNPNNPTGRL 141 (330)
T ss_pred HHHHhCCC-eEEEeCCCcHHHHHHHHHcC------------CEEEEeC-CHH-HHHhh---cccCCEEEEeCCCCCCCCC
Confidence 76667888 69999999999999998888 5777776 221 22111 2457899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCc
Q 013521 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY 310 (441)
Q Consensus 231 ~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~ 310 (441)
++.+++++|+++|++||++||+||+|.++.... ++..+.+..+++|+++||||.+|++|+|+||+++++++
T Consensus 142 ~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~------ 212 (330)
T TIGR01140 142 IPPETLLALAARLRARGGWLVVDEAFIDFTPDA---SLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPAL------ 212 (330)
T ss_pred CCHHHHHHHHHHhHhcCCEEEEECcccccCCcc---chhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHH------
Confidence 999999999999999999999999999887542 33333223467999999999999999999999998887
Q ss_pred hhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCceEEEEEcCCCC
Q 013521 311 PVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-LKVNGGKNAPYVWVQFPGSS 389 (441)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~ 389 (441)
.+.+..... ..+++.++|.++.+++++. .+.++.+++++++++.+.+.|++++ +++.+ .+|+|+|++++ +
T Consensus 213 --~~~l~~~~~--~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~f~~~~~~--~ 283 (330)
T TIGR01140 213 --LARLREALG--PWTVNGPARAAGRAALADT--AWQAATRARLAAERARLAALLARLGGLEVVG-GTALFLLVRTP--D 283 (330)
T ss_pred --HHHHHhcCC--CCCchHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHHHHHhCCCceECC-CCCeEEEEEcC--C
Confidence 355554432 3457889999999999754 3456788999999999999999986 56554 58899999987 3
Q ss_pred hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHH
Q 013521 390 SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLK 438 (441)
Q Consensus 390 ~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~ 438 (441)
..++++++++ +||.+.||..|...+.++|||++++..++ +.++.+|+
T Consensus 284 ~~~l~~~l~~-~gi~v~pg~~f~~~~~~~iRi~~~~~~~~-~~~~~~l~ 330 (330)
T TIGR01140 284 AAALHEALAR-RGILIRDFDNFPGLDPRYLRFALPTDEEN-DRLEEALA 330 (330)
T ss_pred HHHHHHHHHH-CCEEEEECCCCCCCCCCEEEEEecCHHHH-HHHHHhhC
Confidence 5678888776 59999999999654568999999776666 87777663
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=328.82 Aligned_cols=321 Identities=24% Similarity=0.394 Sum_probs=249.1
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
++|+|+.|.+++++++.+.+++.+.+.. ...| +..|..++|+++|+++ ++++++|++|+|+++++.. +
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~------~~~y-~~~g~~~lr~~ia~~~----~~~~~~I~~~~G~~~~l~~~~ 91 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAG------VNRY-PDMGAVELRAALAEHL----GVPPEHVAVGCGSVALCQQLV 91 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHh------cCcC-CCCcHHHHHHHHHHHh----CcCHHHEEECCCHHHHHHHHH
Confidence 5899999999988888999999887653 2357 4579999999999997 6889999999999999987 5
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccc
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG 228 (441)
..++++||.|+++.|+|..+...++..| .+++.++.++++++.++ +++ .++++++++++||||||
T Consensus 92 ~~~~~~gd~Vli~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG 159 (352)
T PRK03321 92 QATAGPGDEVIFAWRSFEAYPILVQVAG------------ATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTG 159 (352)
T ss_pred HHhcCCCCEEEeCCCCHHHHHHHHHHcC------------CEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcC
Confidence 6678999999999999999888888888 58888888754333222 111 35789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC-CcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS 307 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~ 307 (441)
.++|.+++.++++.+ +++++||+||+|.++.+++.. .++..++ ..+++++++||||.||+||+|+||+++++++
T Consensus 160 ~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~--- 234 (352)
T PRK03321 160 TVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVR-DHPNVVVLRTFSKAYGLAGLRVGYAVGHPEV--- 234 (352)
T ss_pred CCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHh-hCCCEEEEecchHHhhhHHHhhhhhcCCHHH---
Confidence 999988888887765 479999999999998876532 3333332 2467999999999999999999999999877
Q ss_pred CCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC
Q 013521 308 NGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG 387 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 387 (441)
++.+... ....+++.+.|.++.+++... ..+.+. .+.+.++++.+.+.|++.|+.+.+ .+|+|+|++++.
T Consensus 235 -----~~~~~~~--~~~~~~s~~~q~~a~~~l~~~-~~~~~~-~~~~~~~r~~~~~~L~~~~~~~~~-~~g~~i~i~l~~ 304 (352)
T PRK03321 235 -----IAALRKV--AVPFSVNSLAQAAAIASLAAE-DELLER-VDAVVAERDRVRAALRAAGWTVPP-SQANFVWLPLGE 304 (352)
T ss_pred -----HHHHHHh--cCCCCCCHHHHHHHHHHhcCH-HHHHHH-HHHHHHHHHHHHHHHHHCCCccCC-CCCCEEEEeCCC
Confidence 4555543 234568899999888888732 233343 444556677889999988877654 578999999863
Q ss_pred CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 388 SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 388 ~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
.+.++.+.+ +++||.+.| |+ .++|||++ .+.++.++++++|+++
T Consensus 305 -~~~~~~~~l-~~~gI~v~~---~~---~~~iRi~~-~~~~~~~~~~~al~~~ 348 (352)
T PRK03321 305 -RTADFAAAA-AEAGVVVRP---FA---GEGVRVTI-GAPEENDAFLRAARAW 348 (352)
T ss_pred -CHHHHHHHH-HHCCEEEEc---cC---CCcEEEee-CCHHHHHHHHHHHHHH
Confidence 456677776 556999987 43 35699997 5677888888888765
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=314.82 Aligned_cols=301 Identities=20% Similarity=0.312 Sum_probs=222.0
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL 151 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l 151 (441)
.++++|+.|+++.+ |+.+.+++.+++.. ...|+. ...+|+++|+++ + ++|++|+|+++++.++
T Consensus 8 ~~~i~l~~~~np~~-p~~~~~a~~~~~~~------~~~yp~---~~~l~~~ia~~~----~---~~I~vt~G~~~al~~~ 70 (311)
T PRK08354 8 EGLIDFSASVNPYP-PEWLDEMFERAKEI------SGRYTY---YEWLEEEFSKLF----G---EPIVITAGITEALYLI 70 (311)
T ss_pred cceeEecCCCCCCC-CHHHHHHHHHHHHH------hhcCCC---hHHHHHHHHHHH----C---CCEEECCCHHHHHHHH
Confidence 36899999988875 57888898887543 235642 467999999986 3 5899999999999986
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCC
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAA 231 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~ 231 (441)
..++.+||.|++++|+|+.+...++..| .+++.++.+.+ .+. +. ..+++++++||||||||.++
T Consensus 71 ~~~~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~~~~d~~-~l~-~~--~~~~~~vi~~~P~NPTG~~~ 134 (311)
T PRK08354 71 GILALRDRKVIIPRHTYGEYERVARFFA------------ARIIKGPNDPE-KLE-EL--VERNSVVFFCNPNNPDGKFY 134 (311)
T ss_pred HHhhCCCCeEEEeCCCcHHHHHHHHHcC------------CEEeecCCCHH-HHH-Hh--hcCCCEEEEecCCCCCCCcc
Confidence 5666699999999999999999999999 46766654332 111 11 13567899999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCch
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYP 311 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~ 311 (441)
|.+++++|+++|++||++||+||+|.+|.+++.. . .++++++++||||.||+||+|+||+++ .
T Consensus 135 ~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~-----~--~~~~vi~~~S~SK~~~l~GlRiG~~v~---~------- 197 (311)
T PRK08354 135 NFKELKPLLDAVEDRNALLILDEAFIDFVKKPES-----P--EGENIIKLRTFTKSYGLPGIRVGYVKG---F------- 197 (311)
T ss_pred CHHHHHHHHHHhhhcCcEEEEeCcchhccccccc-----c--CCCcEEEEeccHhhcCCccceeeeeee---h-------
Confidence 9999999999999999999999999998876421 1 146899999999999999999999998 2
Q ss_pred hHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChH
Q 013521 312 VIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSW 391 (441)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (441)
.+.+..... ....+.+.+.++.+++. ..++++++.++.++++++.+.+.+. .+ +.++|+|++++ ++.
T Consensus 198 -~~~l~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~------~~-~~~~~~~~~~~--~~~ 264 (311)
T PRK08354 198 -EEAFRSVRM--PWSIGSTGYAFLEFLIE-DDFEHLRKTMPLIWREKERFEKALY------VK-SDANFFIKDVG--DAE 264 (311)
T ss_pred -HHHHHHcCC--CccCCHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhcC------CC-CCCcEEEEECC--CHH
Confidence 244444332 23356677776666665 3345566666666666655544431 23 45667777765 456
Q ss_pred HHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 392 DVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 392 ~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
++++.+. ++||.+.||+.|+. ++++||+++.+ ++.+++++.|++
T Consensus 265 ~~~~~l~-~~gv~v~~g~~f~~--~~~iRi~~~~~-~~~~~l~~al~~ 308 (311)
T PRK08354 265 KFVEFLK-RNGILVRDCTSFGL--PGYIRFSVRDR-EENEKLIRALRE 308 (311)
T ss_pred HHHHHHH-HCCeEEEecccCCC--CCeEEEEeCCH-HHHHHHHHHHHH
Confidence 7777665 55999999999963 58999998643 334444444443
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=300.98 Aligned_cols=313 Identities=20% Similarity=0.324 Sum_probs=250.1
Q ss_pred CCCCCCCCcCcHHHHHHHHHHHhhhCC---CCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccc
Q 013521 106 GYKGYGAEQGNMALRTAIADKFYKDMG---IEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQA 181 (441)
Q Consensus 106 ~~~~Y~~~~g~~~lr~~ia~~l~~~~~---~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 181 (441)
..++|++..|.++|...+.++-.--++ ...-+|++|+|.+.+++. +..++++||.|+++.++|++.....+..|
T Consensus 92 ~alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~g-- 169 (472)
T KOG0634|consen 92 RALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALG-- 169 (472)
T ss_pred hhhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccC--
Confidence 456899999999999999996541222 234599999999999997 78889999999999999999999999998
Q ss_pred cccccccCccceeEEeecCCCCCccCCCCC-----------CCCccEEEEcCC--CCccccCCCHHHHHHHHHHHHHcCc
Q 013521 182 GKFLKETGKYRNIVYMNCRPENNFFPDLST-----------TSRTDIIFFCSP--NNPTGHAATWQQLKKLVEFAKANGS 248 (441)
Q Consensus 182 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----------~~~~~~v~i~~p--~NPtG~~~~~~~~~~i~~~a~~~~~ 248 (441)
+.+++|+++.++-..+.+++ .++++++| |-| |||||.+++.+++++|.++|++||+
T Consensus 170 ----------v~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlY-TIPTgqNPTG~tls~errk~iy~LArKyDf 238 (472)
T KOG0634|consen 170 ----------VKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLY-TIPTGQNPTGNTLSLERRKKIYQLARKYDF 238 (472)
T ss_pred ----------ceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEE-eCcCCCCCCCCccCHHHHHHHHHHHHHcCE
Confidence 68999999876432222221 25566655 555 9999999999999999999999999
Q ss_pred EEEEcccccccccCC---C------CC-----------cccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccC
Q 013521 249 IIVYDSAYAAYITDP---S------PR-----------SIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN 308 (441)
Q Consensus 249 ~ii~De~~~~~~~~~---~------~~-----------~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~ 308 (441)
+||+||.|..+.++. . +. +..+++ .++|||-..||||.++ ||+|+||+.+++.++
T Consensus 239 LIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslD-tdGrVIr~dSFSKiia-PGlRlG~it~~~~~l--- 313 (472)
T KOG0634|consen 239 LIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLD-TDGRVIRNDSFSKIIA-PGLRLGWITGNSLFL--- 313 (472)
T ss_pred EEEecCccceeeccccCCCccccCccccHHHHHHhhcCCccccc-ccccEEeccchhhhhc-CcceeEEeecCHHHH---
Confidence 999999999776652 1 11 222332 4689999999999997 999999999998774
Q ss_pred CchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC---CcH-HHHHHHHHHHHHHHHHHHHHHHhC---C-CeeeCCCCceE
Q 013521 309 GYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP---DGF-QALRTVIDYYKENAKIIVDAFQSL---G-LKVNGGKNAPY 380 (441)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~-~~~~~~~~~~~~~~~~l~~~L~~~---g-~~~~~~~~~~~ 380 (441)
+++.+....+..++|.+.|..+.+.++. +|+ +|+.+++..|..|+..+..+|.+. + .++.+|.+|+|
T Consensus 314 -----~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmF 388 (472)
T KOG0634|consen 314 -----KRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMF 388 (472)
T ss_pred -----HHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceE
Confidence 5666666666667888888888887773 334 799999999999999999999986 5 67788899999
Q ss_pred EEEEcC--------CCC-hHHHHHHHHHhcCeEEeCCCCcCCC-C---CC-eEEEEee-cCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFP--------GSS-SWDVFAEILEKTHILTIPGSGFGPG-G---NE-HIRVSAF-GHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~--------~~~-~~~~~~~ll~~~gi~v~pg~~f~~~-~---~~-~iRls~~-~~~~~~~~~l~~l~~~l 441 (441)
+|++++ +.+ .++.....+.++||.+.+|..|... . .+ |+|++++ .+.++++++++|+..++
T Consensus 389 iwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~i 464 (472)
T KOG0634|consen 389 IWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVI 464 (472)
T ss_pred EEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHH
Confidence 999996 122 3456666777889999999999533 1 23 9999984 48899999999998753
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=289.30 Aligned_cols=340 Identities=30% Similarity=0.532 Sum_probs=270.7
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh--CCCCCCcEEEcCCcHHHHHH-H
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD--MGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~--~~~~~~~I~~t~G~~~al~~-l 151 (441)
+||+.|++++..++...+++.+.-. ......|.+..|..++++.+++++... ....++++++++|+++++.. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~ 76 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAAAAL----RAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLL 76 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHhh----ccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHH
Confidence 4789999888777777777665111 145557888899999999999999753 33457899999999999987 5
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC---CC--CCCCccEEEEcCCCCc
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD---LS--TTSRTDIIFFCSPNNP 226 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~---~~--~~~~~~~v~i~~p~NP 226 (441)
..+.++||+|+++.|+|+++...++..| .+++.++.+.++.+... ++ ..+++++|++++|+||
T Consensus 77 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~ 144 (350)
T cd00609 77 RALLNPGDEVLVPDPTYPGYEAAARLAG------------AEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNP 144 (350)
T ss_pred HHhCCCCCEEEEcCCCchhHHHHHHHCC------------CEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCC
Confidence 6667899999999999999999999888 58889998766554331 11 2468999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec-ccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE-ELR 305 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~-~~~ 305 (441)
||.++|.+++++|+++|+++|+++|+|++|+.+.+.+...+.....+..+.+++++|+||.++.+|+|+||+++++ ++
T Consensus 145 tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~- 223 (350)
T cd00609 145 TGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEEL- 223 (350)
T ss_pred CCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHH-
Confidence 9999999999999999999999999999999877654332211122234668999999999988999999999988 55
Q ss_pred ccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee-eCCCCceEEEEE
Q 013521 306 YSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV-NGGKNAPYVWVQ 384 (441)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~ 384 (441)
.+.+.........+++...+.++..+++... ++.++.++.++++++.+.+.|++.+... ..+..|+++|++
T Consensus 224 -------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~ 295 (350)
T cd00609 224 -------LERLKKLLPYTTSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLD 295 (350)
T ss_pred -------HHHHHHHHHhcccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEe
Confidence 4555555555455678888888888887543 6678889999999999999999885443 455689999999
Q ss_pred cCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 385 FPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 385 ~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
++.....+.+.++++++||.+.++..|...+..++|+++....+++++++++|++
T Consensus 296 ~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~~ 350 (350)
T cd00609 296 LPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLAE 350 (350)
T ss_pred cCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhhC
Confidence 9855456677778888899999998887666789999986669999999999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=278.34 Aligned_cols=329 Identities=16% Similarity=0.149 Sum_probs=240.3
Q ss_pred CCCeEEeCCCCC--CCCCcH---HHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH
Q 013521 71 DARLIRLGIGDT--TQPIPD---IITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~~~~---~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~ 145 (441)
+.++++|++|+| |+++|. .+.+++.+++. .+..+|++..|..+||+++++++ + .++|++|+|++
T Consensus 35 g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~-----~g~~~Y~~~~g~~~Lreaia~~~----~--~~~vv~t~ggt 103 (460)
T PRK13238 35 GYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMM-----RGDEAYAGSRSYYRLEDAVKDIF----G--YPYTIPTHQGR 103 (460)
T ss_pred CCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHH-----hCCcccCCCCCHHHHHHHHHHHh----C--CCcEEECCCHH
Confidence 568999999998 677766 57788888775 33457999999999999999997 3 35899999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC------CCcc--CCCCC-----
Q 013521 146 SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE------NNFF--PDLST----- 211 (441)
Q Consensus 146 ~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~------~~~~--~~~~~----- 211 (441)
+++.+ +..+++||| |++++|.|+.+...+...| .+++.+++++. ++|. +|+++
T Consensus 104 ~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G------------~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i 170 (460)
T PRK13238 104 AAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNG------------ATAVDLVIDEALDTGSRHPFKGNFDLEKLEALI 170 (460)
T ss_pred HHHHHHHHHhCCCCC-EEccCCcccchHHHHHHcC------------CEEEEEeccccccccccccccCCcCHHHHHHHH
Confidence 99998 577899999 9999999999998888888 58888888642 2333 44332
Q ss_pred C----CCccEEEEcCCCCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccc--cccCC------CCCcccccCCCccee
Q 013521 212 T----SRTDIIFFCSPNNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAA--YITDP------SPRSIYEIPGAREVA 278 (441)
Q Consensus 212 ~----~~~~~v~i~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~--~~~~~------~~~~~~~~~~~~~~~ 278 (441)
. +++++|++++|+|||| .++|.+++++|.++|++||++||+|+++.. ..+.. .+.++..+ +
T Consensus 171 ~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i------~ 244 (460)
T PRK13238 171 EEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI------A 244 (460)
T ss_pred hhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH------h
Confidence 1 3699999999999998 999999999999999999999999997631 22221 13333322 2
Q ss_pred EEEecCCcccCCcccee------EEEEeeccccccCCchhHHHHHHHH----hh-hcCCCcHHHHHHHHHhcCCC-cHHH
Q 013521 279 IEISSFSKFAGFTGVRL------GWTVVPEELRYSNGYPVIKDFNRIV----CT-CFNGASNIVQAGGLACLSPD-GFQA 346 (441)
Q Consensus 279 i~i~S~SK~~~~~G~r~------G~l~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~a~~~~l~~~-~~~~ 346 (441)
..++|++|.+.++|+|+ ||++++++.+ .+.+.... .. +..+.+...|.|+...+.+. ..++
T Consensus 245 ~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l-------~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~ 317 (460)
T PRK13238 245 REMFSYADGLTMSAKKDAMVNIGGLLCFRDEDL-------FTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDY 317 (460)
T ss_pred hhhcccCcEEEEecccCCCCcceeEEEcChHHH-------HHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHH
Confidence 33456666666666664 3666664322 34443331 11 22233455566666555421 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCC---------ChHHHHHHHHHhcCeEEeCCCCcCCC---
Q 013521 347 LRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS---------SSWDVFAEILEKTHILTIPGSGFGPG--- 414 (441)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gi~v~pg~~f~~~--- 414 (441)
+.. ..+++++|.+.|.+.|+.+..|.+|+|+++++... .+.+++.+|+++.||.+.|++.|...
T Consensus 318 ~~~----~~~~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~ 393 (460)
T PRK13238 318 LAY----RIGQVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDP 393 (460)
T ss_pred HHH----HHHHHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCC
Confidence 233 23367999999999999999889999999998632 45789999999999999999988421
Q ss_pred --C------CCeEEEEeec---CHHHHHHHHHHHHhh
Q 013521 415 --G------NEHIRVSAFG---HREYISEACRRLKNF 440 (441)
Q Consensus 415 --~------~~~iRls~~~---~~~~~~~~l~~l~~~ 440 (441)
+ ..++||++.. +.+.++.+.++|+.+
T Consensus 394 ~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~ 430 (460)
T PRK13238 394 KTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAV 430 (460)
T ss_pred CCccccCCccceEEEecccccCCHHHHHHHHHHHHHH
Confidence 1 4789999866 889999999888764
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=243.77 Aligned_cols=342 Identities=19% Similarity=0.300 Sum_probs=246.4
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhcc----CCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALS----TVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQ 145 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~----~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~ 145 (441)
++.|.|+-|.|.. . |++.+..++...+.. ..+.+-+|..++|...|.+++++.+++ ++++++.||.+|+|+|
T Consensus 30 ~g~imLggGNPa~-i-Pem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQ 107 (417)
T COG3977 30 PGAIMLGGGNPAR-I-PEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQ 107 (417)
T ss_pred CCceeeCCCCccc-C-hhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCcc
Confidence 4589999887642 2 333333333332222 123455899999999999999999987 8889999999999999
Q ss_pred HHHHHHHHhcC----CCC--EEEE-eCCCchhhHhHHHHhccccccccccCccceeEE----eecCCCCCcc--CCCC--
Q 013521 146 SDISRLQMLLG----SNV--TVAV-QDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVY----MNCRPENNFF--PDLS-- 210 (441)
Q Consensus 146 ~al~~l~~l~~----~gd--~Vlv-~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~----v~~~~~~~~~--~~~~-- 210 (441)
++.+.++.++. .|+ .|++ ..|.|-+|-.+.-.-. -.+. +...+++.|. .|.+
T Consensus 108 s~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d-------------~fVs~kP~iel~~~g~FKY~vDF~~l 174 (417)
T COG3977 108 SAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEED-------------LFVSAKPNIELLPAGQFKYHVDFEHL 174 (417)
T ss_pred chHHHHHHHhcCccCCCcceeEeeccChhhccccccccCcc-------------ceeeccCCcccccccceeeccCHHHc
Confidence 99998877762 332 4555 6789988754322111 0111 1112223332 2222
Q ss_pred -CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC
Q 013521 211 -TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 211 -~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
...++.+|.++-|.||||.+++.+++.+|-++|++||+.+|.|.+|+.-...-....+.-+ ..+++|.|.|+||. |
T Consensus 175 ~i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~--w~~NiilC~SLSK~-G 251 (417)
T COG3977 175 HIGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPL--WNENIILCMSLSKL-G 251 (417)
T ss_pred ccccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceeccccccc--CCCCEEEEeehhhc-C
Confidence 2478899999999999999999999999999999999999999999852111001111111 34789999999997 5
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHH-HH-HHHHHHHHHHHHHHHHHHHh
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ-AL-RTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~-~~~~~~~~~~~~~l~~~L~~ 367 (441)
+||.|+|.+++++++ ++.+..+.......++.+.++.+..+++..... .- +-.+--|+++.+...+.|++
T Consensus 252 LPG~R~GIiIane~v--------iqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~ 323 (417)
T COG3977 252 LPGSRCGIIIANEKV--------IQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRR 323 (417)
T ss_pred CCCcceeEEEccHHH--------HHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 899999999999888 466666666556667788888888888865552 22 33455677777777777765
Q ss_pred C----CCeeeCCCCceEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCC-------CCCCeEEEEeecCHHHHHHHH
Q 013521 368 L----GLKVNGGKNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGP-------GGNEHIRVSAFGHREYISEAC 434 (441)
Q Consensus 368 ~----g~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~~~iRls~~~~~~~~~~~l 434 (441)
. .+....|+++.|+|+++. ...+++++++|.++ |+.+.||+.|.+ ....|+|+++..+++.++.++
T Consensus 324 ~lp~~~~~iHkpEGAIFlWLWf~dLPItt~~LYq~LKa~-Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gv 402 (417)
T COG3977 324 YLPEYRCLIHKPEGAIFLWLWFKDLPITTEELYQRLKAR-GVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGV 402 (417)
T ss_pred hcCccceeeecCCcceeehhhhccCCCCHHHHHHHHHhC-eEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHHHH
Confidence 4 456678899999999997 56778888886655 999999999853 346899999988999999999
Q ss_pred HHHHhh
Q 013521 435 RRLKNF 440 (441)
Q Consensus 435 ~~l~~~ 440 (441)
++|.+.
T Consensus 403 a~lae~ 408 (417)
T COG3977 403 AILAEE 408 (417)
T ss_pred HHHHHH
Confidence 999764
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=261.06 Aligned_cols=306 Identities=16% Similarity=0.165 Sum_probs=227.6
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEE
Q 013521 84 QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVA 162 (441)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vl 162 (441)
+...|.+.++..+++..++ ++..-..+|++.+|+|+ +++++++++++|+.+++.. +..++++||.|+
T Consensus 32 l~~~~~~~~~~~~~~~~~~--------g~~~~~~~Le~~lA~~~----g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vl 99 (346)
T TIGR03576 32 LAGGFKIDEEDLELLETYV--------GPAIFEEKVQELGREHL----GGPEEKILVFNRTSSAILATILALEPPGRKVV 99 (346)
T ss_pred CCCChhHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHc----CCCcceEEEECCHHHHHHHHHHHhCCCCCEEE
Confidence 3456888888888887642 12345566777777775 8889999999999999987 678889999999
Q ss_pred Ee---CCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHH
Q 013521 163 VQ---DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKL 239 (441)
Q Consensus 163 v~---~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i 239 (441)
++ .|+|+.+...++..|. +++... +.+ . +...+++++|++ +++||+|.+++.+++++|
T Consensus 100 i~~~d~p~~~s~~~~~~l~ga------------~~~~~~-~l~-~----l~~~~~~~lIii-tg~s~~G~v~~~~~L~~i 160 (346)
T TIGR03576 100 HYLPEKPAHPSIPRSCKLAGA------------EYFESD-ELS-E----LKKIDGTSLVVI-TGSTMDLKVVSEEDLKRV 160 (346)
T ss_pred ECCCCCCCchhHHHHHHHcCC------------EEeccC-CHH-H----HhhCcCceEEEE-ECCCCCCcccCHHHHHHH
Confidence 74 5799999888888883 432211 111 1 222346788777 557999999999999999
Q ss_pred HHHHHHcCcEEEEcccccccccCC-CCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHH
Q 013521 240 VEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNR 318 (441)
Q Consensus 240 ~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~ 318 (441)
+++|++||+++|+||+|+.+.... ...+..... ..++++|||| +++|+|+||+++++++ ++.+..
T Consensus 161 ~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~----~divv~s~SK--alaG~r~G~v~~~~~l--------i~~l~~ 226 (346)
T TIGR03576 161 IKQAKSKEAIVLVDDASGARVRRLYGQPPALDLG----ADLVVTSTDK--LMDGPRGGLLAGRKEL--------VDKIKS 226 (346)
T ss_pred HHHHHHcCCEEEEECCccccccccCCCCCHHHcC----CcEEEeccch--hccccceEEEEeCHHH--------HHHHHH
Confidence 999999999999999999765321 111222221 2377889999 4689999999999887 456665
Q ss_pred HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHH
Q 013521 319 IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEIL 398 (441)
Q Consensus 319 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 398 (441)
.......+.+++.|.++.++|+... .+.+++.++++++++.+.++. +.+.+ +.++|+|++++..++.+++..++
T Consensus 227 ~~~~~~~s~~~~~~~aa~~aL~~~~---~~~~~~~l~~r~~~~~~~l~~--~~~~~-~~~~f~~~~~~~~~~~~~~~~ll 300 (346)
T TIGR03576 227 VGEQFGLEAQAPLLAAVVRALEEFE---LSRIRDAFKRKEEVYLRLFDK--LNVER-TPTGFVIKGVEEEKLIEIGLDLL 300 (346)
T ss_pred hhcCcccCccHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHh--CCCCc-CCCeEEEEeCCCCCHHHHHHHHH
Confidence 5444333468889999999997432 256788999999999888884 44444 35559999997544567888999
Q ss_pred HhcCeEEeCCCCcCCCCCCeEEEEeecCHH---HHHHHHHHHHhhC
Q 013521 399 EKTHILTIPGSGFGPGGNEHIRVSAFGHRE---YISEACRRLKNFL 441 (441)
Q Consensus 399 ~~~gi~v~pg~~f~~~~~~~iRls~~~~~~---~~~~~l~~l~~~l 441 (441)
+++||.++||+.|. ..++|+||+++.+.+ +.+.+++.|++.+
T Consensus 301 ~~~gV~v~~~~~f~-~~~~~vRis~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 301 RNYGIITITAVGMP-GASKTLRFDLAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred HhCCEEEeCCcccC-CCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence 99999999999884 346799999987665 7899999998753
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=263.50 Aligned_cols=331 Identities=18% Similarity=0.168 Sum_probs=232.3
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCC----CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGY----GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y----~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~ 145 (441)
+++++||+.|+| +.+.++.+.+++.+.++++.. ....| +......++++++++++ + .+++|++++|++
T Consensus 15 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~g~~~~~~~l~~~la~~~----~-~~~~i~~~~G~~ 87 (360)
T TIGR00858 15 GRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGA--GSTASRLVSGNSPLHEELEEELAEWK----G-TEAALLFSSGYL 87 (360)
T ss_pred CceEEecccCCcccCCCCHHHHHHHHHHHHhcCC--CCCCcCcccCCcHHHHHHHHHHHHHh----C-CCCEEEECchHH
Confidence 567999999965 345678999999999876542 22222 22234566888888876 4 367899999977
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC--CCccEEEEcCC
Q 013521 146 SDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT--SRTDIIFFCSP 223 (441)
Q Consensus 146 ~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--~~~~~v~i~~p 223 (441)
+.+.++..++++||.|+++.|+|+.+...+...| .+++.++..+.+.+...+... .+++++++.++
T Consensus 88 ~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~ 155 (360)
T TIGR00858 88 ANVGVISALVGKGDLILSDALNHASLIDGCRLSG------------ARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGV 155 (360)
T ss_pred HHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcC------------CceEEecCCCHHHHHHHHHHcccCCCeEEEEeCC
Confidence 7666677778999999999999999988888877 466666542111111111111 35678887799
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC--CcceeEEEecCCcccCCccceeEEEEee
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG--AREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~--~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
+||||...+ +++|.++|+++|++||+||+|..+.++....+.....+ ..+++|+++||||++|.+| ||++++
T Consensus 156 ~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g---G~~~~~ 229 (360)
T TIGR00858 156 FSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG---AYVAGS 229 (360)
T ss_pred ccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC---cEEEcC
Confidence 999999888 88999999999999999999987655432222222211 1367899999999998766 999988
Q ss_pred ccccccCCchhHHHHHHHHh-hh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCce
Q 013521 302 EELRYSNGYPVIKDFNRIVC-TC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAP 379 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 379 (441)
++++ +.+..... .. ..+.+...+.++.++++. ..+.+.++++++++++.+.+.|+++++++.+ +.++
T Consensus 230 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~ 298 (360)
T TIGR00858 230 QALI--------DYLINRARTLIFSTALPPAVAAAALAALEL--IQEEPWRREKLLALIARLRAGLEALGFTLMP-SCTP 298 (360)
T ss_pred HHHH--------HHHHHhCccceecCCCCHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHHcCCccCC-CCCC
Confidence 7763 44432221 11 122344544555566642 1223567899999999999999988877664 5788
Q ss_pred EEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCC-CCCCeEEEEee--cCHHHHHHHHHHHH
Q 013521 380 YVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGP-GGNEHIRVSAF--GHREYISEACRRLK 438 (441)
Q Consensus 380 ~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~--~~~~~~~~~l~~l~ 438 (441)
++|+.++. .++.++.+++++ +||.+.++..|.. .+.+++|+++. .+++++++++++|+
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 299 IVPVIIGDNASALALAEELQQ-QGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred EEEEEeCCHHHHHHHHHHHHH-CCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 99999874 235567777665 5999999776642 34578999985 48999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=261.67 Aligned_cols=336 Identities=18% Similarity=0.195 Sum_probs=229.4
Q ss_pred CCCeEEeCCCC-CCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 71 DARLIRLGIGD-TTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 71 ~~~~i~l~~g~-~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
++++++|+.|+ ++++.++.+.+++.+.+.... .....|....|..++++++++++.+.++.+ ++|++|+| ++++.
T Consensus 41 g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~--~~~~~~~~~~G~~~l~~~l~~~la~~~g~~-~~i~~tsG-~~a~~ 116 (397)
T PRK06939 41 GKEVINFCANNYLGLANHPELIAAAKAALDSHG--FGMASVRFICGTQDLHKELEEKLAKFLGTE-DAILYSSC-FDANG 116 (397)
T ss_pred CCeEEEeeccCccccCCCHHHHHHHHHHHHHcC--CCCcccccccCCcHHHHHHHHHHHHHhCCC-cEEEEcCh-HHHHH
Confidence 56799999998 678888999999999887632 122233335688899999998888755654 78999999 45555
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC----CCCccEEEEcCCC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST----TSRTDIIFFCSPN 224 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~----~~~~~~v~i~~p~ 224 (441)
. +..++++||.|++++|+|+++...+...+ .+++.++..+...+...+.. ..++++|++.+.+
T Consensus 117 ~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~------------~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~ 184 (397)
T PRK06939 117 GLFETLLGKEDAIISDALNHASIIDGVRLCK------------AKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVF 184 (397)
T ss_pred HHHHHhCCCCCEEEEEhhhhHHHHHHHHhcC------------CceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCc
Confidence 4 67788999999999999999988888887 35566554211111111111 1266777765679
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC-CcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
||||...+ +++|+++|++||++||+||+|..........+.....+ .++.+++++||||+++ |+|+||++++++
T Consensus 185 ~~~G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~--g~r~G~v~~~~~ 259 (397)
T PRK06939 185 SMDGDIAP---LPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALG--GASGGYTAGRKE 259 (397)
T ss_pred CCCCCcCC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhC--ccCceEEEeCHH
Confidence 99998665 89999999999999999999963222211111111111 2345699999999994 569999999987
Q ss_pred ccccCCchhHHHHHHHHh-hhcC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEE
Q 013521 304 LRYSNGYPVIKDFNRIVC-TCFN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 381 (441)
++ +.+..... .... ..++..+.++.++++.. ...++++++++++++.+.+.|++++++..++ .+.++
T Consensus 260 ~~--------~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~ 328 (397)
T PRK06939 260 VI--------DWLRQRSRPYLFSNSLAPAIVAASIKVLELL--EESDELRDRLWENARYFREGMTAAGFTLGPG-EHPII 328 (397)
T ss_pred HH--------HHHHHhCccccccCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCCcCCC-CCCEE
Confidence 73 44443221 1111 12333344444444311 1125678899999999999999888776554 34455
Q ss_pred EEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC--CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 382 WVQFPG-SSSWDVFAEILEKTHILTIPGSGFG--PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 382 ~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
++.++. .++.++++.++++ ||.+.++. |. +.+.++||+++ +.+++++++++++|+++
T Consensus 329 ~~~~~~~~~~~~~~~~L~~~-gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~ 390 (397)
T PRK06939 329 PVMLGDAKLAQEFADRLLEE-GVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKV 390 (397)
T ss_pred EEEECCHHHHHHHHHHHHHC-CceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 555542 2456788888776 99999654 43 23357899987 45899999999999875
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=262.55 Aligned_cols=338 Identities=14% Similarity=0.157 Sum_probs=249.6
Q ss_pred CCCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCC--CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKG--YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.+++++||+.+++ ++..++.+.+++.+++++++.... ...|++..+..+|+++||+++ + .++.|++++|.+.
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~----~-~~~~i~~s~G~~a 181 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFL----G-TPDSILYSYGLST 181 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHh----C-CCCEEEECCHHHH
Confidence 3567999999874 677899999999999998653111 124777888999999999997 4 4578999999886
Q ss_pred HHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-------CCCc-cEE
Q 013521 147 DISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-------TSRT-DII 218 (441)
Q Consensus 147 al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-------~~~~-~~v 218 (441)
...++.+++++||.|++....|..+.......+ .+++.++.++.+++...+++ .+++ ++|
T Consensus 182 ~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~------------~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~I 249 (481)
T PLN02822 182 IFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSR------------STIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYI 249 (481)
T ss_pred HHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcC------------CeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEE
Confidence 545578889999999998888888777777776 47888887654444333321 1334 677
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCC--cceeEEEecCCcccCCccceeE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGA--REVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~--~~~~i~i~S~SK~~~~~G~r~G 296 (441)
++..++|+||.+.+ +++|+++|++||+++|+||+|+...++.....+....+. .+.+|+++||||.+|++| |
T Consensus 250 vve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G---G 323 (481)
T PLN02822 250 VVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG---G 323 (481)
T ss_pred EEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC---e
Confidence 77788999999999 899999999999999999999966655333333322111 245699999999999888 9
Q ss_pred EEEeeccccccCCchhHHHHHHHHhhhcCC--CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNG--ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVN 373 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 373 (441)
|++++++++ +.+.........+ .+++.+.++.++++. .+...+++++++++++++.+.|++. |+.+.
T Consensus 324 ~i~g~~~ii--------~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~--l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~ 393 (481)
T PLN02822 324 FCTGSARVV--------DHQRLSSSGYVFSASLPPYLASAAITAIDV--LEDNPSVLAKLKENIALLHKGLSDIPGLSIG 393 (481)
T ss_pred EEEcCHHHH--------HHHHhcCCceeeccccCHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 999988874 3333222222222 346677777777752 1222567889999999999999987 88887
Q ss_pred CCCCceEEEEEcCCC------C---hHHHHHHHHHhcCeEEeCC--CCcCCC-CCCeEEEEee--cCHHHHHHHHHHHHh
Q 013521 374 GGKNAPYVWVQFPGS------S---SWDVFAEILEKTHILTIPG--SGFGPG-GNEHIRVSAF--GHREYISEACRRLKN 439 (441)
Q Consensus 374 ~~~~~~~~~~~~~~~------~---~~~~~~~ll~~~gi~v~pg--~~f~~~-~~~~iRls~~--~~~~~~~~~l~~l~~ 439 (441)
.+.+++++++.+++. + ..+++.++++++||.+.|+ ..|+.. .+.++|+++. .++++|++++++|++
T Consensus 394 ~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~ 473 (481)
T PLN02822 394 SNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKR 473 (481)
T ss_pred CCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 667899999999632 1 2467888887779999987 334321 2467999864 589999999999987
Q ss_pred h
Q 013521 440 F 440 (441)
Q Consensus 440 ~ 440 (441)
+
T Consensus 474 ~ 474 (481)
T PLN02822 474 V 474 (481)
T ss_pred H
Confidence 5
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=235.27 Aligned_cols=331 Identities=22% Similarity=0.308 Sum_probs=245.8
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHHHHHHhc--CCCCEE
Q 013521 86 IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDISRLQMLL--GSNVTV 161 (441)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~~l~~l~--~~gd~V 161 (441)
+|..+++...+.+...+ .....|..++|.+-+|+.+|+|+.+ +...+|++|++|.|++.|+..++.++ ++.+.|
T Consensus 87 fp~Dai~RA~~~L~~~g--Gs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~Gv 164 (475)
T KOG0258|consen 87 FPTDAIKRAKRILNDCG--GSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGV 164 (475)
T ss_pred CCHHHHHHHHHHHHhcC--CcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCce
Confidence 55666666666666544 4677899999999999999999976 66678999999999999999855443 677899
Q ss_pred EEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC----------CCCccEEEEcCCCCccccCC
Q 013521 162 AVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST----------TSRTDIIFFCSPNNPTGHAA 231 (441)
Q Consensus 162 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~----------~~~~~~v~i~~p~NPtG~~~ 231 (441)
+++-|.||-|...+..+| ...+...++++.+|..|... .-++++++++||.||||+++
T Consensus 165 liPiPQYPLYsAti~l~~------------~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvl 232 (475)
T KOG0258|consen 165 LIPIPQYPLYSATISLLG------------GTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVL 232 (475)
T ss_pred EeecCCCchhHHHHHHhC------------CcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhh
Confidence 999999999999999999 47888889999999887432 24788999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCccc----ccCC-Ccce--eEEEecCCccc-CCccceeEEEEee
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIY----EIPG-AREV--AIEISSFSKFA-GFTGVRLGWTVVP 301 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~----~~~~-~~~~--~i~i~S~SK~~-~~~G~r~G~l~~~ 301 (441)
|++.+++|+.+|.+++++++.||+|.+..+.. ..+|+. ++.. .+++ ++.+.|.||.+ |=.|.|-||+-.-
T Consensus 233 s~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~ 312 (475)
T KOG0258|consen 233 SEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESL 312 (475)
T ss_pred cHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecc
Confidence 99999999999999999999999999988764 344443 2221 1222 46788889965 3389999998642
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcC-----CCcH----HHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS-----PDGF----QALRTVIDYYKENAKIIVDAFQSL-GLK 371 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-----~~~~----~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 371 (441)
+- .++...++....+.. .+++...|...-.... +..+ ...+...+.++++.+.+.+.+++. |+.
T Consensus 313 n~-----~prv~~qi~Kl~si~-lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~ 386 (475)
T KOG0258|consen 313 NR-----DPRVKQQIKKLASIK-LCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGIS 386 (475)
T ss_pred cC-----ChhHHHHHHHHHhhh-hcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCcee
Confidence 21 112233343333322 2345556665444443 1112 334667778888999999999998 999
Q ss_pred eeCCCCceEEEEEcC--C----------C-ChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEeecCHHHHHHHHHHH
Q 013521 372 VNGGKNAPYVWVQFP--G----------S-SSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSAFGHREYISEACRRL 437 (441)
Q Consensus 372 ~~~~~~~~~~~~~~~--~----------~-~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~~~~~~~~~~~l~~l 437 (441)
+.++++++|++-++. . . .+.=.+.+||+..||++.||+.|+ ..|.-++|.++-... + +.++++
T Consensus 387 cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~i~~~ 463 (475)
T KOG0258|consen 387 CNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EIIEKF 463 (475)
T ss_pred eccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch--h-HHHHHH
Confidence 999999999987663 1 1 222246889999999999999998 456778999974433 3 566665
Q ss_pred Hh
Q 013521 438 KN 439 (441)
Q Consensus 438 ~~ 439 (441)
++
T Consensus 464 ~~ 465 (475)
T KOG0258|consen 464 KK 465 (475)
T ss_pred HH
Confidence 54
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=254.62 Aligned_cols=336 Identities=16% Similarity=0.191 Sum_probs=235.4
Q ss_pred CCCeEEeCCCC-CCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 71 DARLIRLGIGD-TTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 71 ~~~~i~l~~g~-~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
+++++||+.++ +++++++.+.+++.+.+.+.. .....|....|..++++++++++.+..+. ++.|++++|+++.+.
T Consensus 32 g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~g~~~l~~~l~~~l~~~~g~-~~~i~~~sG~~a~~~ 108 (385)
T TIGR01825 32 GKEVINLSSNNYLGFADHPRLKEAAAQAIQQYG--VGAGAVRTIAGTLRLHEELEEKLAKFKKT-EAALVFQSGFNTNQG 108 (385)
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHcC--CCCCccCcccCCcHHHHHHHHHHHHHhCC-CcEEEECcHHHHHHH
Confidence 46799999987 577788999999999887542 23446777789999999999999875564 468999999766555
Q ss_pred HHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCcc
Q 013521 150 RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPT 227 (441)
Q Consensus 150 ~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPt 227 (441)
++..++++||.|+++.|+|+.+...+...| .+++.++..+...+...+.. .++++++++++++|||
T Consensus 109 a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~t 176 (385)
T TIGR01825 109 VLSALLRKGDIVLSDELNHASIIDGLRLTK------------ATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMD 176 (385)
T ss_pred HHHHhCCCCCEEEEEccccHHHHHHHHhcC------------CceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCC
Confidence 577788999999999999999887777666 34444432111111111111 1367888777889999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC-cccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR-SIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
|.+++ +++|.++|++||+++|+||+|+.+.++.... ....++-.++++++++||||.+|++| ||++++++++
T Consensus 177 G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~~~~~~- 249 (385)
T TIGR01825 177 GDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAGHKELI- 249 (385)
T ss_pred CCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC---CEEecCHHHH-
Confidence 99998 7889999999999999999998765542111 11112112567899999999998666 9999887763
Q ss_pred cCCchhHHHHHHHHh-hhcC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEE
Q 013521 307 SNGYPVIKDFNRIVC-TCFN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQ 384 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 384 (441)
+.+..... .... ..+++.+.++.++++... + ..+..++++++++++.+.|++.|+++..+ .+.++++.
T Consensus 250 -------~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~ 319 (385)
T TIGR01825 250 -------EYLKNRARPFLFSTAQPPAVVAALAAAVDELQ-R-SPELMERLWDNTRFFKAGLGKLGYDTGGS-ETPITPVV 319 (385)
T ss_pred -------HHHHHhCccccccCCCCHHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CCCEEEEE
Confidence 44433221 1111 234566666666664211 1 13456777888999999999888887654 44566666
Q ss_pred cCC-CChHHHHHHHHHhcCeEEeCCCCcC--CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 385 FPG-SSSWDVFAEILEKTHILTIPGSGFG--PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 385 ~~~-~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
++. .+..++++.++++ ||.+. +..|. +.+..+||++. ..+++++++++++|+++
T Consensus 320 ~~~~~~~~~~~~~L~~~-gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~ 378 (385)
T TIGR01825 320 IGDEKAAQEFSRRLFDE-GIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKV 378 (385)
T ss_pred ECCHHHHHHHHHHHHHC-CcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 653 2345777888777 99985 44443 33457899985 56899999999999875
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-30 Score=257.40 Aligned_cols=335 Identities=17% Similarity=0.207 Sum_probs=235.5
Q ss_pred CCCeEEeCCCCC-CCC-CcHHHHHHHHHHHhhccCC--CCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 71 DARLIRLGIGDT-TQP-IPDIITSAMAEHAFALSTV--KGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~-~~~~~~~al~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
+.+.+||++.++ ++. .++...+++.+++.+++.. .....|++..+..++++++|+++ + .++.|++++|...
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~----g-~~~ai~~~~G~~a 173 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFV----G-KPAAIVFGMGYAT 173 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHh----C-CCcEEEECCHHHH
Confidence 356899998885 454 3455666777777776532 22334887889999999999997 5 4678999998777
Q ss_pred HHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCC-----cc
Q 013521 147 DISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSR-----TD 216 (441)
Q Consensus 147 al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~-----~~ 216 (441)
.+.++..++++||.|++++|+|+++...++..| ++++.++.++...+...+.. .++ .+
T Consensus 174 n~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~G------------a~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k 241 (489)
T PLN02483 174 NSTIIPALIGKGGLIISDSLNHNSIVNGARGSG------------ATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKK 241 (489)
T ss_pred HHHHHHHhCCCCCEEEEcchhhHHHHHHHHHcC------------CeEEEEeCCCHHHHHHHHHhhhhccccccccCCce
Confidence 776678889999999999999999999998888 58888886532222111110 122 36
Q ss_pred EEEEcCC-CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC---cccccCCCcceeEEEecCCcccCCcc
Q 013521 217 IIFFCSP-NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR---SIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 217 ~v~i~~p-~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~---~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
+++++++ .|++|.+.+ +++|+++|++||+++|+||+|+....+.... +....+ ..+++|+++||||.+|++|
T Consensus 242 ~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~-~~~~dI~~~SfSKs~g~~G 317 (489)
T PLN02483 242 IIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVD-PADVDIMMGTFTKSFGSCG 317 (489)
T ss_pred EEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCC-cccCcEEEEecchhcccCc
Confidence 6666655 799999988 8999999999999999999998433322222 222221 2356799999999999777
Q ss_pred ceeEEEEeeccccccCCchhHHHHHHHHhh---hcCCCcHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFNRIVCT---CFNGASNIVQAGGLACLS----PDGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~----~~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
||++++++++ +.+...... .....+...| ++.+.++ +.+..+..+++++++++++++.+.|
T Consensus 318 ---G~i~~~~~li--------~~l~~~~~~~~~~~~~~p~~~~-~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L 385 (489)
T PLN02483 318 ---GYIAGSKELI--------QYLKRTCPAHLYATSMSPPAVQ-QVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSEL 385 (489)
T ss_pred ---eEEEcCHHHH--------HHHHHhCccccccCCcCHHHHH-HHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHH
Confidence 9999988873 455433221 1111223333 3444442 2222334556789999999999999
Q ss_pred HhCCCeeeCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC--CCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 366 QSLGLKVNGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFG--PGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+++|+.+..+.+++.+|+.+.. ....++.++++++ ||.+.| ..|. +...+.+|+++. .+++++++++++|.++
T Consensus 386 ~~~G~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~~-GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~ 463 (489)
T PLN02483 386 QKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQ-NVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEV 463 (489)
T ss_pred HHCCCcccCCCCCCEEEEEECCHHHHHHHHHHHHHC-CcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 9998887766677788877642 2345677787765 999997 4442 334578999974 5899999999999875
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-30 Score=253.34 Aligned_cols=329 Identities=16% Similarity=0.204 Sum_probs=226.0
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCc---Cc----HHHHHHHHHHHhhhCCCCCCcEEEcC
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQ---GN----MALRTAIADKFYKDMGIEGDEIFISD 142 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~---g~----~~lr~~ia~~l~~~~~~~~~~I~~t~ 142 (441)
+.++|+|+.|++ +++.++.+.+++.+++.+.+. +|++.. |. .++++++|+++ +. +++++++
T Consensus 37 g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~-----~~~~s~~~~G~~~~~~~le~~ia~~~----g~--~~~ii~~ 105 (393)
T TIGR01822 37 GREVLNFCANNYLGLSSHPDLIQAAKDALDEHGF-----GMSSVRFICGTQDIHKELEAKIAAFL----GT--EDTILYA 105 (393)
T ss_pred CceEEEeeCCCccccCCCHHHHHHHHHHHHHhCC-----CCCCcCcccCChHHHHHHHHHHHHHh----CC--CcEEEEC
Confidence 457999999995 788889999999999986431 333333 65 88999999987 43 5677778
Q ss_pred CcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC----CCCccE
Q 013521 143 GAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST----TSRTDI 217 (441)
Q Consensus 143 G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~----~~~~~~ 217 (441)
|+++++.. +..++++||.|+++.|+|+++...+...+. +.+.++..+.+.+...+.. ..++++
T Consensus 106 ~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~------------~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 173 (393)
T TIGR01822 106 SCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKA------------KRYRYANNDMADLEAQLKEARAAGARHRL 173 (393)
T ss_pred chHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCC------------ceEEeCCCCHHHHHHHHHhhhhcCCCceE
Confidence 88888887 567889999999999999999888877763 2322221110111111111 126778
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC-CcceeEEEecCCcccCCccceeE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG-AREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
|++.+++||||.+.+ +++|+++|++||+++|+||+|+.........+.....+ .++.+++++|+||.++ |+|+|
T Consensus 174 v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~--g~r~G 248 (393)
T TIGR01822 174 IATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALG--GASGG 248 (393)
T ss_pred EEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhh--CCCcE
Confidence 887788999999988 88999999999999999999963222222222222211 1245699999999874 78999
Q ss_pred EEEeeccccccCCchhHHHHHHHH-hhhcC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIV-CTCFN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
|++++++++ +.+.... ..... +.++..+.++.++++. .+..++++++++++++++.+.|++.|+.+.+
T Consensus 249 ~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~a~~~al~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 318 (393)
T TIGR01822 249 FTTARKEVV--------ELLRQRSRPYLFSNSLPPAVVGASIKVLEM--LEASNELRDRLWANTRYFRERMEAAGFDIKP 318 (393)
T ss_pred EEEeCHHHH--------HHHHHhCccceecCCCCHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999988773 4443321 11122 2234444455555531 1224677889999999999999888887654
Q ss_pred CCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC--CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 375 GKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFG--PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 375 ~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
+ .+.++++.+++ ....++...|+++ ||.+. +..|. +.+..++|+++ +.+++++++++++|+++
T Consensus 319 ~-~~~~~~i~~~~~~~~~~l~~~L~~~-gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~ 386 (393)
T TIGR01822 319 A-DHPIIPVMLYDAVLAQRFARRLLEE-GIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRI 386 (393)
T ss_pred C-CCCEEEEEeCCHHHHHHHHHHHHHC-CeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3 45566666553 3456777777766 99998 55453 22345799886 45899999999999875
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-30 Score=253.73 Aligned_cols=335 Identities=16% Similarity=0.132 Sum_probs=226.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC----CCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG----AEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSD 147 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~a 147 (441)
+.+.|+.+... +.|+.+.+++.+.+...........|. -.....++|+.+|+++ +. ++++|++|+|++++
T Consensus 16 ~~iyld~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~~i~~t~g~t~~ 90 (398)
T TIGR03392 16 GTVYLDSAATA-LKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFL----NAPDAENIVWTRGTTES 90 (398)
T ss_pred CeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHh----CCCCCCeEEEeCChHHH
Confidence 47889888765 467889999998876432111111111 0123466888999886 77 47899999999999
Q ss_pred HHH-HHHh----cCCCCEEEEeCCCchhh----HhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCc
Q 013521 148 ISR-LQML----LGSNVTVAVQDPSFPAY----IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRT 215 (441)
Q Consensus 148 l~~-l~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~ 215 (441)
+++ +..+ +++||+|++++|+|++. ...++..| .+++.++.+.+..++++ +++ .+++
T Consensus 91 l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g------------~~v~~v~~~~~~~~~~~~l~~~i~~~t 158 (398)
T TIGR03392 91 INLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTG------------AKVVKLPIGADLLPDIRQLPELLTPRT 158 (398)
T ss_pred HHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcC------------cEEEEEecCCCCCcCHHHHHHHhccCc
Confidence 998 4554 47999999999999773 34445556 58889988654322221 222 3679
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+++++++|+||||.+++ +++|+++|+++|+++|+|++|+.... +..+... +..+++.|++|.+|.+| +
T Consensus 159 ~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~---~~~~~~~----~~d~~~~s~~K~~gp~G--~ 226 (398)
T TIGR03392 159 RILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHG---PPDVQAL----DIDFYAFSGHKLYGPTG--I 226 (398)
T ss_pred eEEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCC---CCChhhc----CCCEEEEecccccCCCc--e
Confidence 99999999999999999 77899999999999999999974322 2223222 23488899999988555 9
Q ss_pred EEEEeeccccccCCchhHH-H---------HH---HHHhhhcCCCcH---HHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 013521 296 GWTVVPEELRYSNGYPVIK-D---------FN---RIVCTCFNGASN---IVQAGGLACLSPDGFQALRTVIDYYKENAK 359 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~-~---------~~---~~~~~~~~~~~~---~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (441)
||++++++++..-.+.... . +. ........+.+. .+..+++..+.+.+ .++..++.++.++
T Consensus 227 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g---~~~i~~~~~~l~~ 303 (398)
T TIGR03392 227 GVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDID---IAAAEAWSVSLAD 303 (398)
T ss_pred EEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHH
Confidence 9999988764221000000 0 00 000011112333 33444444443333 3566777888889
Q ss_pred HHHHHHHhC-CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC------CCCCeEEEEe--ecCHHHH
Q 013521 360 IIVDAFQSL-GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP------GGNEHIRVSA--FGHREYI 430 (441)
Q Consensus 360 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~iRls~--~~~~~~~ 430 (441)
.+.+.|+++ |+....++.+.++++.+++....++...| +++||.+++|..+.. ..+++||+|+ +++++|+
T Consensus 304 ~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei 382 (398)
T TIGR03392 304 LAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALL-AESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDV 382 (398)
T ss_pred HHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHH-HhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHH
Confidence 999999887 78776555667788888765666777665 456999999986632 1257999996 5689999
Q ss_pred HHHHHHHHhh
Q 013521 431 SEACRRLKNF 440 (441)
Q Consensus 431 ~~~l~~l~~~ 440 (441)
+++++.|+++
T Consensus 383 ~~l~~~l~~~ 392 (398)
T TIGR03392 383 DALVDAVGAA 392 (398)
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-30 Score=250.55 Aligned_cols=333 Identities=16% Similarity=0.146 Sum_probs=224.0
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcC----cHHHHHHHHHHHhhhCCCCCCcEEEcCCcH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQG----NMALRTAIADKFYKDMGIEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~ 145 (441)
++++|||+.+++ ++.+++.+.+++.+.+..+.. ....|....| ..++++.+++++ + .++.|++++|+.
T Consensus 38 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~g~~~~~~~l~~~la~~~----~-~~~~i~~~~g~~ 110 (385)
T PRK05958 38 GRRMLNFASNDYLGLARHPRLIAAAQQAARRYGA--GSGGSRLVTGNSPAHEALEEELAEWF----G-AERALLFSSGYA 110 (385)
T ss_pred CceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCC--CCCCcCcccCCcHHHHHHHHHHHHHh----C-CCcEEEECcHHH
Confidence 567999999875 455678899999999976431 1222322233 455555566554 5 356777777766
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCC-CccEEEEcCCC
Q 013521 146 SDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTS-RTDIIFFCSPN 224 (441)
Q Consensus 146 ~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~-~~~~v~i~~p~ 224 (441)
..+.++..++++||.|+++.|+|+.+...+...| .+++.++..+.+.+...+...+ ++.++++.+++
T Consensus 111 ~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~ 178 (385)
T PRK05958 111 ANLAVLTALAGKGDLIVSDKLNHASLIDGARLSR------------ARVRRYPHNDVDALEALLAKWRAGRALIVTESVF 178 (385)
T ss_pred HHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcC------------CceEEeCCCCHHHHHHHHHhccCCCeEEEEEecc
Confidence 5555567778999999999999999988887777 4666666532111111111111 34455544779
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC---cccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR---SIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~---~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
||||...+ +++|+++|++||+++|+||+|+.+.++.... ....++ ..+++|+++|+||.+|.+| ||++++
T Consensus 179 ~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G---g~~~~~ 251 (385)
T PRK05958 179 SMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLA-GEPDVILVGTLGKALGSSG---AAVLGS 251 (385)
T ss_pred cCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCC-CCCceEEEEechhhcccCC---cEEEcC
Confidence 99999888 8899999999999999999998654432111 111232 2356799999999998766 999988
Q ss_pred ccccccCCchhHHHHHHHH-hhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCce
Q 013521 302 EELRYSNGYPVIKDFNRIV-CTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAP 379 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 379 (441)
+++ .+.+.... ... ..+.+++.+.++.++++.... ...++++++++++.+.+.|++.++++.+ +.+.
T Consensus 252 ~~~--------~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~ 320 (385)
T PRK05958 252 ETL--------IDYLINRARPFIFTTALPPAQAAAARAALRILRR--EPERRERLAALIARLRAGLRALGFQLMD-SQSA 320 (385)
T ss_pred HHH--------HHHHHHhCccceecCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCCcCC-CCCC
Confidence 766 33333221 111 122444544455555542111 1466788999999999999988887665 4677
Q ss_pred EEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 380 YVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 380 ~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
++|+.++. .++.++.+.+.+ +||.+.++..+. +.+.+++|+++. .+++++++++++|++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 321 IQPLIVGDNERALALAAALQE-QGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred EEEEEeCCHHHHHHHHHHHHH-CCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 88998874 244567777765 599999865443 334579999985 58999999999999875
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=247.02 Aligned_cols=312 Identities=18% Similarity=0.177 Sum_probs=212.0
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQ 152 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~ 152 (441)
+|+|+++.++. +++.+++++.+.. .....|+++....+|+++||+++ |+++. ++++|+++++.+ +.
T Consensus 1 ~~~~~~~~~~~-p~~~~~~a~~~~~------~~~~~Y~~~~~~~~L~~~la~~~----g~~~~--~v~~~g~~a~~~~l~ 67 (333)
T PRK10534 1 MIDLRSDTVTR-PSRAMLEAMMAAP------VGDDVYGDDPTVNALQDYAAELS----GKEAA--LFLPTGTQANLVALL 67 (333)
T ss_pred CcccccccCCC-CCHHHHHHHHhcc------CCCcccCCCHHHHHHHHHHHHHh----CCCeE--EEeCchHHHHHHHHH
Confidence 47899998877 7788888887643 34457888889999999999996 66443 566666666655 66
Q ss_pred HhcCCCCEEEEeCCCchhhHhH--HHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC------CccEEE
Q 013521 153 MLLGSNVTVAVQDPSFPAYIDT--SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS------RTDIIF 219 (441)
Q Consensus 153 ~l~~~gd~Vlv~~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~------~~~~v~ 219 (441)
.++++||+|+++.|+|...... ....+. .+++.++.+. ++..|+++ .+ ++++|+
T Consensus 68 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~lv~ 134 (333)
T PRK10534 68 SHCERGEEYIVGQAAHNYLYEAGGAAVLGS-----------IQPQPIDAAA--DGTLPLDKVAAKIKPDDIHFARTRLLS 134 (333)
T ss_pred HhcCCCCeeEEechhhhhHhcCCchHHhcC-----------ceEEeecCCC--CCCCCHHHHHHhhcccCcCcccceEEE
Confidence 6789999999998888542221 223331 2566666643 33444322 12 588999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE-EE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG-WT 298 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G-~l 298 (441)
+|||+ ||.+++.+++++|+++|++|++++++||+|..........+...+....+++ +.||||.+|++ +| |+
T Consensus 135 l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~--~~s~SK~~~~~---~G~~~ 207 (333)
T PRK10534 135 LENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSF--TICLSKGLGTP---VGSLL 207 (333)
T ss_pred EecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEE--EEEeEcCCCCc---ccceE
Confidence 99766 5999999999999999999999999999987322110011222222222332 34899998754 68 68
Q ss_pred EeeccccccCCchhHHHHHHHHhhhcCC--CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013521 299 VVPEELRYSNGYPVIKDFNRIVCTCFNG--ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK 376 (441)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 376 (441)
++++++ ++.+..++.....+ .+.+.|.++.+.+++ .....+...++++++.+.|+++|+++.++
T Consensus 208 ~~~~~~--------i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~r~~l~~~L~~~g~~~~~~- 273 (333)
T PRK10534 208 VGNRDY--------IKRARRWRKMTGGGMRQAGILAAAGLYALKH-----NVARLQEDHDNAAWLAEQLREAGADVMRQ- 273 (333)
T ss_pred EcCHHH--------HHHHHHHHHHhCCchhhHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHhCCCccCCC-
Confidence 888877 45565554432211 233556666666642 12233334456789999999999988765
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 377 NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
+++|+|+++++....++ .++++++||.++|+. ++|++.+ .+++++++++++|++++
T Consensus 274 ~~nfv~~~~~~~~~~~~-~~~l~~~gi~v~~~~--------~~rl~~~~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 274 DTNMLFVRVGEEQAAAL-GEYMRERNVLINASP--------IVRLVTHLDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred CceEEEEECCchhHHHH-HHHHHHcCeeecCCc--------eEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 79999999974334455 556667799998863 5888863 58999999999998764
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=247.69 Aligned_cols=335 Identities=17% Similarity=0.160 Sum_probs=227.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC----CCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG----AEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSD 147 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~a 147 (441)
+.+.|+.+..+ +.|..+.+++.+.+.+.........+. ......++|+.+|+++ ++ ++++|++|+|++++
T Consensus 19 ~~~yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~~i~~~~~~t~~ 93 (401)
T PRK10874 19 AGVYLDSAATA-LKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLL----NAPDAKNIVWTRGTTES 93 (401)
T ss_pred ceEEEeCCccc-CCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHc----CCCCCCEEEEECCHHHH
Confidence 47888888765 467889999999887542111111110 0223567888888875 77 78999999999999
Q ss_pred HHH-HHHh----cCCCCEEEEeCCCchhh----HhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCc
Q 013521 148 ISR-LQML----LGSNVTVAVQDPSFPAY----IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRT 215 (441)
Q Consensus 148 l~~-l~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~ 215 (441)
+++ +..+ +++||+|++.+|+|++. ...++..| .+++.++.+.+..++++ +++ .+++
T Consensus 94 i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g------------~~v~~v~~~~~~~~d~~~l~~~i~~~t 161 (401)
T PRK10874 94 INLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTG------------AKVVKLPLGADRLPDVDLLPELITPRT 161 (401)
T ss_pred HHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhC------------CEEEEEecCCCCcCCHHHHHHhcCcCc
Confidence 998 4454 47999999999999763 34445556 48888888653222211 222 3789
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+++++++|+||||.+++ +++|+++|+++|+++|+|++|+.... +..+..+ +..+++.|++|.+|.+| +
T Consensus 162 ~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~---~~~~~~~----~~d~~~~s~~K~~gp~G--~ 229 (401)
T PRK10874 162 RILALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHF---PADVQAL----DIDFYAFSGHKLYGPTG--I 229 (401)
T ss_pred EEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCcccccc---cCCchhc----CCCEEEEecccccCCCc--c
Confidence 99999999999999999 78999999999999999999973222 2233222 34588999999988666 6
Q ss_pred EEEEeeccccccCCchhH--H-----H---HH---HHHhhhcCCCcHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHHH
Q 013521 296 GWTVVPEELRYSNGYPVI--K-----D---FN---RIVCTCFNGASNIVQAGGLACL---SPDGFQALRTVIDYYKENAK 359 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~--~-----~---~~---~~~~~~~~~~~~~~~~a~~~~l---~~~~~~~~~~~~~~~~~~~~ 359 (441)
||++++++.+..-..... . . +. ........+.+...+.++.+++ .+.+ ..+.+++.++.++
T Consensus 230 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g---~~~~~~~~~~l~~ 306 (401)
T PRK10874 230 GVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADID---INQAESWSRSLAT 306 (401)
T ss_pred EEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHH
Confidence 999988876422100000 0 0 00 0001111223434444444444 3322 3556777888889
Q ss_pred HHHHHHHhC-CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC------CCCCeEEEEe--ecCHHHH
Q 013521 360 IIVDAFQSL-GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP------GGNEHIRVSA--FGHREYI 430 (441)
Q Consensus 360 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~iRls~--~~~~~~~ 430 (441)
++.+.|+++ |++...++.+.++++.+++....++.+.| +++||.+++|..+.. ...++||+|+ +++++++
T Consensus 307 ~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edi 385 (401)
T PRK10874 307 LAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLL-AEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDV 385 (401)
T ss_pred HHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHH-HHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHH
Confidence 999999887 88877656667788888765566666555 556999999986642 2357999997 4589999
Q ss_pred HHHHHHHHhh
Q 013521 431 SEACRRLKNF 440 (441)
Q Consensus 431 ~~~l~~l~~~ 440 (441)
+++++.|+++
T Consensus 386 d~ll~al~~~ 395 (401)
T PRK10874 386 DALVNAVDRA 395 (401)
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=249.94 Aligned_cols=335 Identities=16% Similarity=0.160 Sum_probs=228.1
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCC-C-CCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKG-Y-KGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~-~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
.+.++|+.+++ ++..++.+.+++.+.+..++...+ . ..|+......+|++.+|+++ +. ++.|++++|+++..
T Consensus 46 ~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~----g~-~~~i~~~sG~~a~~ 120 (410)
T PRK13392 46 RRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLH----GK-ESALLFTSGYVSND 120 (410)
T ss_pred ceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHh----CC-CCEEEECcHHHHHH
Confidence 45788888874 677899999999999987642111 1 12333335678999999986 63 57899999875444
Q ss_pred HHHHHhc--CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCC
Q 013521 149 SRLQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPN 224 (441)
Q Consensus 149 ~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~ 224 (441)
.++..+. .+||.|+++.+.|..+...+...| .++..++.+....+...++. .+++++|++++|+
T Consensus 121 ~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~ 188 (410)
T PRK13392 121 AALSTLGKLLPGCVILSDALNHASMIEGIRRSG------------AEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVY 188 (410)
T ss_pred HHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcC------------CeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCC
Confidence 4455453 489988888878888777777666 35555543211111111111 2578999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCC-cceeEEEecCCcccCCccceeEEEEeecc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGA-REVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
||||.+++ +++|.++|++||+++|+||+|....++.....+....+. ++..++++||||.+|++| ||++++++
T Consensus 189 n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~~~ 262 (410)
T PRK13392 189 SMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAASAD 262 (410)
T ss_pred CCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc---chhhcCHH
Confidence 99999999 888899999999999999999943333222222221111 122388999999999888 99998877
Q ss_pred ccccCCchhHHHHHHHHhh--hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEE
Q 013521 304 LRYSNGYPVIKDFNRIVCT--CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 381 (441)
+ ++.+...... .....+++.+.++.++|+.. +.....++.++++++++.+.|++.|+++.++ .++++
T Consensus 263 ~--------~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~ 331 (410)
T PRK13392 263 L--------IDFVRSFAPGFIFTTALPPAVAAGATAAIRHL--KTSQTERDAHQDRVAALKAKLNANGIPVMPS-PSHIV 331 (410)
T ss_pred H--------HHHHHHhCcchhccCcCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CCCEE
Confidence 6 3444433321 12234556777777777632 2224456788899999999999888887654 55666
Q ss_pred EEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 382 WVQFPGS-SSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 382 ~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+.++.. ...++.++|++++||.+.++.... +.+..++|+++ ..++++++++++.|+++
T Consensus 332 ~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~ 394 (410)
T PRK13392 332 PVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAI 394 (410)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5555421 234677778777799999875432 23457999997 46899999999999875
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=220.22 Aligned_cols=321 Identities=20% Similarity=0.311 Sum_probs=237.9
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
++.++.++-.+.+..++|+.. ++ -..| ++.-..+++.++++- -+.++|+|+++-|+.+.|.+
T Consensus 40 G~~iv~ld~~e~~ryPdP~q~--------ef-----k~~~-~d~rnk~ls~a~~~d----kpLt~dnic~GvGsDE~ID~ 101 (375)
T KOG0633|consen 40 GRDIVKLDANENPRYPDPEQM--------EF-----KYVY-PDPRNKRLSDALAQD----KPLTSDNICVGVGSDELIDL 101 (375)
T ss_pred CCCceEeccccCCCCcCHHHc--------cc-----cccc-CCcccchhhhhcccC----CCCCccceEEecCcHHHHHH
Confidence 457889998886654445431 11 1124 233445677776664 37889999999999999998
Q ss_pred H-HHhcCCC-CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC-------CCCCccEEEEc
Q 013521 151 L-QMLLGSN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS-------TTSRTDIIFFC 221 (441)
Q Consensus 151 l-~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~-------~~~~~~~v~i~ 221 (441)
+ ...+.|| ++|+...|+|..|.-.+..-+ ++|+.+|+.++ |..+.+ ....+|.+++|
T Consensus 102 iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd------------~eVvkvpl~pd--F~lnvdai~evl~~ds~iK~~F~t 167 (375)
T KOG0633|consen 102 IIRCVCDPGKEKILDCPPTYSMYVVDAAIND------------AEVVKVPLNPD--FSLNVDAIAEVLELDSKIKCIFLT 167 (375)
T ss_pred HHhheecCCccceeecCCcceeEEEEeecCC------------ceEEEecCCCC--ccccHHHHHHHHhccccceEEEEc
Confidence 5 5668999 899999999998876665555 68999999874 444422 23589999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
+|+||||..+..+++.+|++.=. +.+|++||+|.+|...+....+. ...++++++.+|||.||++|+|+||-..+
T Consensus 168 SPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFsg~~S~~~lV---~kYpNLivlqTlSKsfGLAGiRvG~~~~~ 242 (375)
T KOG0633|consen 168 SPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFSGVESRMKLV---KKYPNLIVLQTLSKSFGLAGIRVGYGAFP 242 (375)
T ss_pred CCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeeccccccchHh---HhCCceeehhhhhhhcCcceeEeeccccc
Confidence 99999999999999999997432 78999999999998754322222 23467899999999999999999999998
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eeCCCCce
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK-VNGGKNAP 379 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~ 379 (441)
.++ +..+.+.+. .+ +.|.++..+|++++.+...+.++..++.+.+.+..+...|.+. ++. +..+..++
T Consensus 243 ~~i--------a~iln~~Ka-PY-NiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daN 312 (375)
T KOG0633|consen 243 LSI--------AEILNRAKA-PY-NISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDAN 312 (375)
T ss_pred HHH--------HHHHHhccC-Cc-cccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccc
Confidence 887 344444443 33 3788888889999997666778999999999999999999886 332 34556789
Q ss_pred EEEEEcCCCC---hHHHHHHHHHhcCeEEeC-CCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 380 YVWVQFPGSS---SWDVFAEILEKTHILTIP-GSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 380 ~~~~~~~~~~---~~~~~~~ll~~~gi~v~p-g~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|+.+++.+.+ +..++.+++.+.||.|+- |+ ...-.+++|++.+. +|+-..+++.|++++
T Consensus 313 FiLi~v~~~~n~~akkly~q~at~~gVvVRfrgs--e~~c~G~lRitvGt-~EentvL~k~~K~~l 375 (375)
T KOG0633|consen 313 FILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGS--EEGCKGYLRITVGT-PEENTVLMKCLKQFL 375 (375)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCC--ccccceeEEEEcCC-cccchHHHHHHHhhC
Confidence 9999997332 345667777788999972 22 12246899999754 455577788887764
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=240.51 Aligned_cols=331 Identities=20% Similarity=0.204 Sum_probs=220.0
Q ss_pred CeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCC----CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 73 RLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGY----GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 73 ~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y----~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
.+++|+.+++ +.+.++.+.+++++.+.++.. +...| +......++++.+++++ +.+ +.|++++|+ ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~la~~~----~~~-~~iv~~sg~-~a 73 (349)
T cd06454 2 KVLNFCSNDYLGLANHPEVIEAAKEALDKYGV--GAGGSRLISGTSDLHEELEEELAEFH----GKE-AALVFSSGY-AA 73 (349)
T ss_pred CceecccCCccccCCCHHHHHHHHHHHHHhCC--CCCCcCeecCCchHHHHHHHHHHHHh----CCC-CEEEeccHH-HH
Confidence 4678888775 455679999999999986542 22222 22334566777777765 543 456665564 56
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC---CCCccEEEEcCC
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST---TSRTDIIFFCSP 223 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~---~~~~~~v~i~~p 223 (441)
+.+ +..++++||.|+++.|+|+++...+...| .+++.++..+...+...+.. ..+++++++++|
T Consensus 74 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~ 141 (349)
T cd06454 74 NDGVLSTLAGKGDLIISDSLNHASIIDGIRLSG------------AKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGV 141 (349)
T ss_pred HHHHHHHhcCCCCEEEEehhhhHHHHHHHHHcC------------CceEEecCCCHHHHHHHHHHhhccCCCeEEEEecc
Confidence 554 67778999999999999999888887777 46666643211111000111 135678888899
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccC-CCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIP-GAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~-~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
+||||...+ +++|+++|++||+++|+|++|+..........+...+ ...+.+++++|+||.++.+| ||++.++
T Consensus 142 ~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~~~ 215 (349)
T cd06454 142 YSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAGSK 215 (349)
T ss_pred ccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC---CEEECCH
Confidence 999999988 7899999999999999999997433321111111111 12356799999999998655 9999887
Q ss_pred cccccCCchhHHHHHHHHh-hhc-CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 303 ELRYSNGYPVIKDFNRIVC-TCF-NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
+++ +.+..... ... ...+...+.++.+.++.. ...+..+++++++++.+.+.|.++|+....++++.+
T Consensus 216 ~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~ 285 (349)
T cd06454 216 ELI--------DYLRSYARGFIFSTSLPPAVAAAALAALEVL--QGGPERRERLQENVRYLRRGLKELGFPVGGSPSHII 285 (349)
T ss_pred HHH--------HHHHHhchhhhccCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcE
Confidence 763 33332211 111 234555555566666421 113567889999999999999988887766545555
Q ss_pred EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 381 VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
.++.++ .....++.+.|+++ ||.+.++.... ..+.+++|+++. .+++++++++++|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 286 PPLIGDDPAKAVAFSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EEEeCCChHHHHHHHHHHHhC-CceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 565554 33456777777766 99999864221 223579999974 5899999999999874
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=237.43 Aligned_cols=330 Identities=16% Similarity=0.177 Sum_probs=231.5
Q ss_pred CCCCeEEeCCCCC--CCCCcH---HHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCc
Q 013521 70 PDARLIRLGIGDT--TQPIPD---IITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGA 144 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~~~~~---~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~ 144 (441)
.+.+++.|..+++ |+..+. .+.+++.+++.. +..+|++..|..+|++++++++ +. +++++|+|+
T Consensus 9 ~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~-----gd~~Y~~~~g~~~Leeaia~~~----g~--~~vv~t~~G 77 (431)
T cd00617 9 AGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMML-----GDEAYAGSKSFYDLEDAVQDLF----GF--KHIIPTHQG 77 (431)
T ss_pred cCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHh-----CCCccCCCCCHHHHHHHHHHHH----CC--CeEEEcCCH
Confidence 3568999999998 776653 555555666552 2246999999999999999997 33 589999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCC------cc--CCCCC----
Q 013521 145 QSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENN------FF--PDLST---- 211 (441)
Q Consensus 145 ~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~------~~--~~~~~---- 211 (441)
++|+.+ +..+++|||.| +++|.|..+...+...| ..++.++++++.+ |. +|+++
T Consensus 78 t~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~G------------a~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~ 144 (431)
T cd00617 78 RGAENILFSILLKPGRTV-PSNMHFDTTRGHIEANG------------AVPVDLVIDEAHDAQELIPFKGNIDVAKLEKL 144 (431)
T ss_pred HHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhCC------------CEeEEEecccccccccccCCCCCcCHHHHHHH
Confidence 999997 67789999988 68999999988888888 5888888875432 32 44322
Q ss_pred -C----CCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCcEEEEccccccc--cc-----CC-CCCcccccCCCcce
Q 013521 212 -T----SRTDIIFFCSPNNPT-GHAATWQQLKKLVEFAKANGSIIVYDSAYAAY--IT-----DP-SPRSIYEIPGAREV 277 (441)
Q Consensus 212 -~----~~~~~v~i~~p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~--~~-----~~-~~~~~~~~~~~~~~ 277 (441)
. .++++|++++|+||+ |+++|.+++++|.++|++||++||+|+++... .+ ++ ...++. +.
T Consensus 145 I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~------ei 218 (431)
T cd00617 145 IDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIA------EI 218 (431)
T ss_pred hCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHH------HH
Confidence 1 247889999999998 99999999999999999999999999995421 11 11 123333 22
Q ss_pred eEEEecCCcccCCccce------eEEEEeeccccccCCchhHHHHHHHH----hhh-cCCCcHHHHHHHHH-hcCCCcHH
Q 013521 278 AIEISSFSKFAGFTGVR------LGWTVVPEELRYSNGYPVIKDFNRIV----CTC-FNGASNIVQAGGLA-CLSPDGFQ 345 (441)
Q Consensus 278 ~i~i~S~SK~~~~~G~r------~G~l~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~a~~~-~l~~~~~~ 345 (441)
++.+.|+||.+.+.|+| .||++++++.+ .+++.... ... ..+.+.. |.++.+ .|.+...
T Consensus 219 ~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l-------~~~~~~~~~~~~~~~~~gG~~~r-~~~A~A~gL~e~~~- 289 (431)
T cd00617 219 AREMFSYADGCTMSAKKDGLVNIGGFLALRDDEL-------YEEARQRVVLYEGFVTYGGMAGR-DMEALAQGLREAVE- 289 (431)
T ss_pred HHHhhccCCEEEEEeecCCCCccceEEEeCcHHH-------HHHHHHhccccCCccccccccHH-HHHHHHHHHHhccc-
Confidence 45577788888778877 56999987532 34433211 111 1112222 333333 4432111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC---------CChHHHHHHHHHhcCeEEeC-CCCc---C
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG---------SSSWDVFAEILEKTHILTIP-GSGF---G 412 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ll~~~gi~v~p-g~~f---~ 412 (441)
.+.+.+.++ +++++.+.|++.|+.+..|.+|+++|++++. ..+.+++.+|+++.||.+.. |+.. .
T Consensus 290 -~~~l~~~~~-~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~ 367 (431)
T cd00617 290 -EDYLRHRVE-QVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRD 367 (431)
T ss_pred -HHHHHHHHH-HHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccC
Confidence 123333333 5699999999999999988999999999862 14788899999999999764 4421 1
Q ss_pred CC-------CCCeEEEEe---ecCHHHHHHHHHHHHhh
Q 013521 413 PG-------GNEHIRVSA---FGHREYISEACRRLKNF 440 (441)
Q Consensus 413 ~~-------~~~~iRls~---~~~~~~~~~~l~~l~~~ 440 (441)
+. .-..+||++ .-+.++++...+.|..+
T Consensus 368 ~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~ 405 (431)
T cd00617 368 PNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIAL 405 (431)
T ss_pred CCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHH
Confidence 11 136899997 23678888877777654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=234.22 Aligned_cols=320 Identities=18% Similarity=0.230 Sum_probs=206.2
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQ 152 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~ 152 (441)
.+++|+.+.++. +++.+.+++.+... . .....| +....+|++++|+|+ +.+. .+++++|+.+.+..+.
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~a~~~~~~--~--~~~~~~--~~~~~~l~~~la~~~----~~~~-~~~~~~Gs~a~~~~l~ 73 (353)
T PLN02721 6 RVVDLRSDTVTK-PTDAMRAAMANAEV--D--DDVLGY--DPTALRLEEEMAKIF----GKEA-ALFVPSGTMGNLISVL 73 (353)
T ss_pred hhhhhhcccccC-CCHHHHHHHHhccC--C--CcccCC--CHHHHHHHHHHHHHh----CCce-eEEecCccHHHHHHHH
Confidence 368999999886 56777777765311 1 222334 334799999999997 4432 4555556555443466
Q ss_pred HhcC-CCCEEEEeCCCchhhHh---HHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C-------CCccEE
Q 013521 153 MLLG-SNVTVAVQDPSFPAYID---TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T-------SRTDII 218 (441)
Q Consensus 153 ~l~~-~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~-------~~~~~v 218 (441)
.+++ +||+|++++|+|..... .+...| .+++.++.+++..++++ +++ . +++++|
T Consensus 74 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v 141 (353)
T PLN02721 74 VHCDVRGSEVILGDNSHIHLYENGGISTLGG------------VHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLI 141 (353)
T ss_pred HHccCCCCeEEEcCccceehhcccchhhhcC------------ceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEE
Confidence 6676 99999999999865554 445555 47888887644322222 111 1 478999
Q ss_pred EEcC-CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCS-PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~-p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
++++ |+||||.++|.+++++|+++|++||+++|+|++|..........+...... +...++.|+||+++. ++||
T Consensus 142 ~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~--~~d~~~~s~sK~l~~---~~G~ 216 (353)
T PLN02721 142 CLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVK--AADSVSVCLSKGLGA---PVGS 216 (353)
T ss_pred EEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhh--hCCEEEEecccccCC---ceee
Confidence 9986 488999999999999999999999999999998863221100112221111 122456689999873 3565
Q ss_pred -EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHH--HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCee-
Q 013521 298 -TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGG--LACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKV- 372 (441)
Q Consensus 298 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~- 372 (441)
++.++++ ++.+...........+...+.++ ...++ ++.+++ ++..++++.+.+.|+++ ++.+
T Consensus 217 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~ 283 (353)
T PLN02721 217 VIVGSKSF--------IRKAKRLRKTLGGGMRQVGVLAAAALVALQ----ENVPKL-EDDHKKAKLLAEGLNQIKGLRVN 283 (353)
T ss_pred EEecCHHH--------HHhHHHHHHhcCCCeehhHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHhCCCcEEe
Confidence 5666666 34444443322222222222222 22222 223333 33456788999999987 7754
Q ss_pred eCCCCceEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 373 NGGKNAPYVWVQFPG---SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 373 ~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
..++.++++|++++. .+..++.+.|. ++||.+.|+. ..+||+++ +.+++++++++++|++++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gi~v~~~~------~~~lR~~~~~~~~~~~i~~~~~~l~~~~ 350 (353)
T PLN02721 284 VAAVETNIVYFDITDGSRITAEKLCKSLE-EHGVLLMPGN------SSRIRVVTHHQISDSDVQYTLSCFQQAA 350 (353)
T ss_pred cCCccceEEEEEccCCccccHHHHHHHHH-hCCcEEecCC------CceEEEEecCcCCHHHHHHHHHHHHHHh
Confidence 334567789999974 35566777766 6699999973 46899997 458999999999998764
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-28 Score=238.56 Aligned_cols=340 Identities=16% Similarity=0.150 Sum_probs=227.0
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCC-CCCCCCC---CcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK-GYKGYGA---EQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQS 146 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~-~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~~ 146 (441)
.+.+.|+.+... +.|+.+.+++.+.+.+..... ...+|.. .....++|+++|+++ +++ +++|++|+|+++
T Consensus 31 ~~~iyLd~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~~v~~t~g~t~ 105 (424)
T PLN02855 31 SKLVYLDNAATS-QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFI----NASTSREIVFTRNATE 105 (424)
T ss_pred CCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHc----CCCCCCEEEEeCCHHH
Confidence 357999988765 577889999999887653211 1111211 123468899999986 664 589999999999
Q ss_pred HHHHH-HH----hcCCCCEEEEeCCCchhhH----hHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCC
Q 013521 147 DISRL-QM----LLGSNVTVAVQDPSFPAYI----DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSR 214 (441)
Q Consensus 147 al~~l-~~----l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~ 214 (441)
+++.+ .. .+++||+|++..+.|++.. ..++..| .+++.++++.++.+.++ +++ .++
T Consensus 106 al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g------------~~v~~v~~~~~~~~~~~~l~~~i~~~ 173 (424)
T PLN02855 106 AINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTG------------AVLKFVGLTPDEVLDVEQLKELLSEK 173 (424)
T ss_pred HHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcC------------CEEEEEecCCCCCcCHHHHHHHhccC
Confidence 99974 33 3689999999999888643 3334445 48888888654433222 221 368
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce
Q 013521 215 TDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 215 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
+++|++++|+||||.++| +++|+++|+++|+++|+|++|+.- ..+..+..+ +..+++.|++|.+|.+|
T Consensus 174 t~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~g---~~~~~~~~~----~~d~~~~s~~K~~gp~G-- 241 (424)
T PLN02855 174 TKLVATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSVP---HMPVDVQTL----GADFLVASSHKMCGPTG-- 241 (424)
T ss_pred ceEEEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcC---CcCCCchhc----CCCEEEeecccccCCCc--
Confidence 999999999999999999 778899999999999999999621 112223222 23488999999887455
Q ss_pred eEEEEeeccccccCCchhH------H------HHH-HHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 295 LGWTVVPEELRYSNGYPVI------K------DFN-RIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~------~------~~~-~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
+||++++++.+..-.+... . .+. ........+.+.....++.++++.......++.+++.++.++.+
T Consensus 242 ~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l 321 (424)
T PLN02855 242 IGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYL 321 (424)
T ss_pred cEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 8999998877522110000 0 000 00011111233333333333333111123477778888889999
Q ss_pred HHHHHhC-CCeeeCCC------CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC------CCCCeEEEEe--ecC
Q 013521 362 VDAFQSL-GLKVNGGK------NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP------GGNEHIRVSA--FGH 426 (441)
Q Consensus 362 ~~~L~~~-g~~~~~~~------~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~iRls~--~~~ 426 (441)
.+.|+++ |+++..+. .+.++.+.+++....++.+.|.+++||.++.|..+.. ..+++||+|+ +++
T Consensus 322 ~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt 401 (424)
T PLN02855 322 YEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNT 401 (424)
T ss_pred HHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCC
Confidence 9999887 78876432 2457778887656667777766555999999875431 1246899997 679
Q ss_pred HHHHHHHHHHHHhh
Q 013521 427 REYISEACRRLKNF 440 (441)
Q Consensus 427 ~~~~~~~l~~l~~~ 440 (441)
++|++++++.|+++
T Consensus 402 ~~di~~l~~~l~~~ 415 (424)
T PLN02855 402 KEEVDAFIHALKDT 415 (424)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=236.09 Aligned_cols=334 Identities=16% Similarity=0.174 Sum_probs=216.6
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+.++|||..|. ..+ ..++.+.+++.+++.+... ....| +..-..++.+.++++ ++. +++++++|++++
T Consensus 26 g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~----~g~--~~~~~~~sg~~a 96 (379)
T TIGR00707 26 GKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVH--VSNLY-YTEPQEELAEKLVEH----SGA--DRVFFCNSGAEA 96 (379)
T ss_pred CCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccc--ccccc-CCHHHHHHHHHHHhh----CCC--CEEEEeCCcHHH
Confidence 46789998863 223 3568999999998876431 11234 333455566666665 354 499999999999
Q ss_pred HHHHHHhc----C----CCCEEEEeCCCchhhHhHHHHhccccccccccC-ccceeEEeecCCCCCccCCCCC--CCCcc
Q 013521 148 ISRLQMLL----G----SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG-KYRNIVYMNCRPENNFFPDLST--TSRTD 216 (441)
Q Consensus 148 l~~l~~l~----~----~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~--~~~~~ 216 (441)
+..+..++ . +||+|++.+|+|+++...+...+.......... -..+...++.. + ..+++. .++++
T Consensus 97 ~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d-~~~l~~~~~~~~~ 172 (379)
T TIGR00707 97 NEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYN---D-IESLKKAIDDETA 172 (379)
T ss_pred HHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCC---C-HHHHHHHhhhCee
Confidence 88632322 2 379999999999988766665553211000000 00011111111 0 011111 24688
Q ss_pred EEEEcCCCCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 217 IIFFCSPNNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 217 ~v~i~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+|+++.++||+|.. ++.+++++|.++|++||+++|+||+|.+|.+.+.+.+.......++ +.+|||.++ +|+|+
T Consensus 173 ~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d----~~t~sK~~~-~G~ri 247 (379)
T TIGR00707 173 AVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPD----IITLAKGLG-GGVPI 247 (379)
T ss_pred EEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCC----EEEEccccc-CCccc
Confidence 88886557777764 7999999999999999999999999998765543222212211223 237899999 99999
Q ss_pred EEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee---
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV--- 372 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--- 372 (441)
||++++++++ +.+.........+.++++|.++.++|+... .....++++++++.+.+.|++.+...
T Consensus 248 G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (379)
T TIGR00707 248 GATLAKEEVA--------EAFTPGDHGSTFGGNPLACAAALAVLEVIE---KERLLENVKEKGDYFKERLEELGKNYPNK 316 (379)
T ss_pred EEEEEcHHHH--------hhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 9999988773 444432222334578899999888885211 13456677777777777776642211
Q ss_pred eCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 373 NGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
..+..|+++|++++. +..++.+.+. ++||.+.|+. .+++|+++ ..+++++++++++|++++
T Consensus 317 ~~~~~g~~~~~~~~~-~~~~~~~~l~-~~Gv~v~~~~------~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 317 EVRGKGLMLGIELEA-PCKDIVKKAL-EKGLLVNCAG------PKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred ccccCceEEEEEecC-cHHHHHHHHH-HCCcEEeeCC------CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 112368899999864 3456666655 5699999852 47899995 468999999999999874
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=235.43 Aligned_cols=340 Identities=19% Similarity=0.178 Sum_probs=224.7
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC----CCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG----AEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~ 145 (441)
+.+++.|+.+..+ ++|+.+.+++.+.+...........+. ......++|+.+|+++ +.+ +++|++|+|++
T Consensus 16 ~~~~~yld~~~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~----~~~~~~~v~~~~g~t 90 (403)
T TIGR01979 16 GKPLVYLDSAATS-QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFI----NAASDEEIVFTRGTT 90 (403)
T ss_pred CCceEEEeCcccc-CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHh----CcCCCCeEEEeCCHH
Confidence 3468999988876 567888999988776432101111110 1224568889999886 776 68999999999
Q ss_pred HHHHHH-HHh----cCCCCEEEEeCCCchhhH----hHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC
Q 013521 146 SDISRL-QML----LGSNVTVAVQDPSFPAYI----DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS 213 (441)
Q Consensus 146 ~al~~l-~~l----~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~ 213 (441)
++++++ ..+ +++||.|+++++.|++.. ..+...| .+++.++.+.++.+..+ +++ .+
T Consensus 91 ~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~i~~ 158 (403)
T TIGR01979 91 ESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTG------------ATLKFIPLDDDGTLDLDDLEKLLTE 158 (403)
T ss_pred HHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcC------------cEEEEEecCCCCCCCHHHHHHHhcc
Confidence 999874 332 588999999999988743 3334455 58888888754332221 211 36
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
+++++++++|+||||.++| +++|.++|++||+++|+|++|+.... +..+... +.++++.|++|.+|.+|
T Consensus 159 ~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~---~~~~~~~----~~d~~~~s~~K~~gp~G- 227 (403)
T TIGR01979 159 KTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPHM---PVDVQAL----DCDFYVFSGHKMYGPTG- 227 (403)
T ss_pred CCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcCcc---ccCcccc----CCCEEEEecccccCCCC-
Confidence 7999999999999999999 78899999999999999999874221 2222222 34599999999988556
Q ss_pred eeEEEEeeccccccCCchh-----HHH-------HHH-HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 013521 294 RLGWTVVPEELRYSNGYPV-----IKD-------FNR-IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKI 360 (441)
Q Consensus 294 r~G~l~~~~~~~~~~~~~~-----~~~-------~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (441)
+|+++++++++....+.. .+. +.. .......+.+.....++.++++.......++.+++..+.++.
T Consensus 228 -~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~ 306 (403)
T TIGR01979 228 -IGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAY 306 (403)
T ss_pred -ceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 899998877642100000 000 000 000111223444444444444311111246777888888999
Q ss_pred HHHHHHhC-CCeeeCCC----CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcC------CCCCCeEEEEe--ecCH
Q 013521 361 IVDAFQSL-GLKVNGGK----NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFG------PGGNEHIRVSA--FGHR 427 (441)
Q Consensus 361 l~~~L~~~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~------~~~~~~iRls~--~~~~ 427 (441)
+.+.|+++ |+++..+. .+.++.+.+++.+..++.+ .|+++||.+.+|..+. ...++++|+|+ ++++
T Consensus 307 l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~ 385 (403)
T TIGR01979 307 ALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGT-ILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTE 385 (403)
T ss_pred HHHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHH-HHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCH
Confidence 99999887 78876543 2567777777555556554 5566799999886431 11257899997 4588
Q ss_pred HHHHHHHHHHHhh
Q 013521 428 EYISEACRRLKNF 440 (441)
Q Consensus 428 ~~~~~~l~~l~~~ 440 (441)
+|++++++.|+++
T Consensus 386 ~di~~l~~~l~~~ 398 (403)
T TIGR01979 386 EDIDALVEALKKV 398 (403)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999765
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=235.97 Aligned_cols=338 Identities=15% Similarity=0.156 Sum_probs=216.6
Q ss_pred CCCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..|.+ .+. .++.+.+++.+.+.... .....| ..++++++++++.+..+ .+++++|+|+++
T Consensus 37 dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~-----~~~~~~~la~~l~~~~~--~~~v~~~~gg~e 107 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLI--HTSNLY-----YIEPQEELAEKLVELSG--MDKVFFCNSGAE 107 (396)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhcc--cccccc-----CCHHHHHHHHHHHhhcC--CCEEEECCCcHH
Confidence 3567899988753 233 35889999999887532 111223 25678888888765434 489999999999
Q ss_pred HHHH-HHHhcCCC-------CEEEEeCCCchhhHhHHHHhccccccccccCc-cceeEEeecCCCCCccCCCCC--CCCc
Q 013521 147 DISR-LQMLLGSN-------VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGK-YRNIVYMNCRPENNFFPDLST--TSRT 215 (441)
Q Consensus 147 al~~-l~~l~~~g-------d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~--~~~~ 215 (441)
|+.+ +..+...+ +.|++..++|+++.......+........... ...+..++..+ ..++++ .+++
T Consensus 108 A~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~i~~~~ 183 (396)
T PRK02627 108 ANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFND----IEALKAAITDKT 183 (396)
T ss_pred HHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCC----HHHHHHhcCCCe
Confidence 9997 44333222 68999999999876555444321100000000 00111111110 011111 2578
Q ss_pred cEEEEcCCCCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce
Q 013521 216 DIIFFCSPNNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 216 ~~v~i~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
++|+++.++||+| .+++.+.+++|.++|++||+++|+||+|.+|...+.+.+.....-.++ +.||||.++ +|+|
T Consensus 184 ~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pd----i~t~sK~~~-~G~r 258 (396)
T PRK02627 184 AAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPD----IMTLAKGLG-GGVP 258 (396)
T ss_pred EEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCC----EEEEcchhh-CCcc
Confidence 8999888899999 689999999999999999999999999998765543222222221233 347999998 9999
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLGLKVN 373 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 373 (441)
+||++++++++ +.+.........+.+++.|.++.++++.... .+.++.++..+..++.+.+.+.+++....
T Consensus 259 ig~~~~~~~~~--------~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 330 (396)
T PRK02627 259 IGAVLAKEKVA--------DVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKE 330 (396)
T ss_pred cEEEEEcHHHH--------hccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence 99999998763 3343322334456789999998888863211 22233333333333333333333322111
Q ss_pred CCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 374 GGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
....|.++|++++ .+..+++..++++ ||.+.|+. .+++|+++ ..+++++++++++|++++
T Consensus 331 ~~~~g~~~~i~~~-~~~~~~~~~l~~~-Gv~v~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~l 392 (396)
T PRK02627 331 VRGLGLMIGIELD-RPAAEIVKKALEK-GLLINVTG------DNVLRLLPPLIISKEEIDEAVDRLEEVL 392 (396)
T ss_pred eccCcEEEEEEec-CcHHHHHHHHHHC-CeEEeecC------CCEEEEECCcccCHHHHHHHHHHHHHHH
Confidence 2236889999984 3567788888776 99999863 46799985 568999999999998753
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=217.08 Aligned_cols=342 Identities=19% Similarity=0.235 Sum_probs=254.7
Q ss_pred cCCCCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC-----CCCCcE--E
Q 013521 68 KHPDARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG-----IEGDEI--F 139 (441)
Q Consensus 68 ~~~~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~-----~~~~~I--~ 139 (441)
+.+.++.|||++|.+ +..--..+.++++++-+.+........|-|..|.++.++++++.+ +| ++.++| +
T Consensus 22 ~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~ll---FG~d~~~l~~~Rv~t~ 98 (396)
T COG1448 22 ADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLL---FGADSPALAEDRVATV 98 (396)
T ss_pred cCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHh---cCCCcHHHHhhhHhhe
Confidence 345568899999975 222223345555555555444466778999999999999999998 44 233433 4
Q ss_pred EcCCcHHHHHHH---HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-------C
Q 013521 140 ISDGAQSDISRL---QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-------L 209 (441)
Q Consensus 140 ~t~G~~~al~~l---~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-------~ 209 (441)
-|.|+|.|+.+. ..-+.|...|++++|+|+++..++...| .++...|..+..+-..| +
T Consensus 99 Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aG------------l~v~~Y~Yyd~~~~~~df~~mla~L 166 (396)
T COG1448 99 QTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAG------------LEVETYPYYDAETKGLDFDGMLADL 166 (396)
T ss_pred ecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcC------------CceeeeeccccccccccHHHHHHHH
Confidence 789999999863 4445677789999999999999999999 57777776554333333 3
Q ss_pred CCCCCccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCcccccCCCcceeEEEecCCc
Q 013521 210 STTSRTDIIFFCSP-NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYEIPGAREVAIEISSFSK 286 (441)
Q Consensus 210 ~~~~~~~~v~i~~p-~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~--~~~~~~~~~~~~~~i~i~S~SK 286 (441)
...+...+|++.-+ |||||.-++.+++++|+++.++.+.+.+.|-+|..|..+-. ...+..+.....-.++..||||
T Consensus 167 ~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SK 246 (396)
T COG1448 167 KTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSK 246 (396)
T ss_pred HhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhh
Confidence 33466677777643 99999999999999999999999999999999998765421 2222222222223799999999
Q ss_pred ccCCccceeEEEEe--eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHH
Q 013521 287 FAGFTGVRLGWTVV--PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-----QALRTVIDYYKENAK 359 (441)
Q Consensus 287 ~~~~~G~r~G~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~ 359 (441)
.||+-|-|+|.+.+ ++... ..++..++.......+.+++......+...|++... ..+..+++++.+.|+
T Consensus 247 nfgLYgERVGa~~vva~~~~~---a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~ 323 (396)
T COG1448 247 NFGLYGERVGALSVVAEDAEE---ADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQ 323 (396)
T ss_pred hhhhhhhccceeEEEeCCHHH---HHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997654 33221 222344556666677777888888888888887654 457899999999999
Q ss_pred HHHHHHHhC----CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHH
Q 013521 360 IIVDAFQSL----GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEAC 434 (441)
Q Consensus 360 ~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l 434 (441)
.|.+.|.+. .+.+...+.|+|.+..+ +.+.+.+|.+++||++.... ||+++. +..+++...
T Consensus 324 ~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gl----s~~QV~rLree~~IY~v~sG----------Ri~vaGl~~~ni~~va 389 (396)
T COG1448 324 ALVDALKALGAPRNFDFIISQRGMFSYTGL----SPEQVDRLREEFGIYLVASG----------RINVAGLNTSNIDYVA 389 (396)
T ss_pred HHHHHHHhhCCCcccchHhhcCceeecCCC----CHHHHHHHHHhccEEEecCC----------eeeeccCChhhHHHHH
Confidence 999999984 47777778999988754 46788999999999987532 999865 899999999
Q ss_pred HHHHhhC
Q 013521 435 RRLKNFL 441 (441)
Q Consensus 435 ~~l~~~l 441 (441)
+.|.+++
T Consensus 390 ~ai~~v~ 396 (396)
T COG1448 390 KAIAAVL 396 (396)
T ss_pred HHHHhhC
Confidence 9998764
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=228.13 Aligned_cols=313 Identities=16% Similarity=0.148 Sum_probs=211.5
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCCCCCc--CcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHHHHHH-HHHhcCCCC
Q 013521 84 QPIPDIITSAMAEHAFALSTVKGYKGYGAEQ--GNMALRTAIADKFYKDMGIEG-DEIFISDGAQSDISR-LQMLLGSNV 159 (441)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~--g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~al~~-l~~l~~~gd 159 (441)
.+.|+.+.+++.+.+.. ..| +.. -..++++.+++++ ++++ +.+++|+|+++++.+ +..++++||
T Consensus 8 ~~~~~~v~~a~~~~~~~-------~~~-~~~~~~~~~~~~~la~~~----g~~~~~~~~~~~~~t~al~~~~~~~~~~g~ 75 (356)
T cd06451 8 SNVPPRVLKAMNRPMLG-------HRS-PEFLALMDEILEGLRYVF----QTENGLTFLLSGSGTGAMEAALSNLLEPGD 75 (356)
T ss_pred cCCCHHHHHHhCCCccC-------CCC-HHHHHHHHHHHHHHHHHh----cCCCCCEEEEecCcHHHHHHHHHHhCCCCC
Confidence 45778888888654321 122 211 1446666666665 7754 457888888999987 677889999
Q ss_pred EEEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC-CccEEEEcCCCCccccCCCH
Q 013521 160 TVAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS-RTDIIFFCSPNNPTGHAATW 233 (441)
Q Consensus 160 ~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~-~~~~v~i~~p~NPtG~~~~~ 233 (441)
+|++..++|++ +...++..| .+++.++.+++...+.+ +++ .+ ++++|++++|+||||.+++
T Consensus 76 ~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~- 142 (356)
T cd06451 76 KVLVGVNGVFGDRWADMAERYG------------ADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP- 142 (356)
T ss_pred EEEEecCCchhHHHHHHHHHhC------------CCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccC-
Confidence 99999998876 455666677 58888888754322221 221 23 8899999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhH
Q 013521 234 QQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVI 313 (441)
Q Consensus 234 ~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~ 313 (441)
+++|.++|+++|+++++|++|.. +..+.++... +..+++.|++|+++ .+.++||++.+++++
T Consensus 143 --~~~i~~~a~~~~~~li~D~~~~~---g~~~~~~~~~----~~d~~~~s~~K~l~-~p~g~G~l~~~~~~~-------- 204 (356)
T cd06451 143 --LEGIGALAKKHDALLIVDAVSSL---GGEPFRMDEW----GVDVAYTGSQKALG-APPGLGPIAFSERAL-------- 204 (356)
T ss_pred --HHHHHHHHHhcCCEEEEeeehhc---cCcccccccc----CccEEEecCchhcc-CCCCcceeEECHHHH--------
Confidence 77788899999999999998862 1112233222 22367789999998 445799999988764
Q ss_pred HHHHH----------------HHh---hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 314 KDFNR----------------IVC---TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 314 ~~~~~----------------~~~---~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
+.+.. ... ....+++...+.++.++++......+++..++.+++++++.+.|++.|+++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 284 (356)
T cd06451 205 ERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLA 284 (356)
T ss_pred HHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeecc
Confidence 22211 000 11122334444444444432112345677888889999999999988887754
Q ss_pred CC---CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 375 GK---NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~---~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
++ .+.++|+.++ +.+..++++.|.++.||.+.+|..+. .+++||+++ .++++++++++++|++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~--~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 285 KPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPT--AGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred CcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccccc--cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 32 3445678876 34556677776655599999987432 346999997 358999999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=232.99 Aligned_cols=336 Identities=17% Similarity=0.164 Sum_probs=226.0
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCC--CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKG--YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+.++++|+.+++ ++..+|.+.+++.+.+..++...+ ...|++.....+|++++|+++ + .++.+++++|+...
T Consensus 45 ~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~----g-~~~~~~~~sG~~an 119 (407)
T PRK09064 45 EREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLH----G-KEAALVFTSGYVSN 119 (407)
T ss_pred CceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHh----C-CCcEEEECcHHHHH
Confidence 356899999985 677889999999999887642111 112444556788888888886 5 35678888887654
Q ss_pred HHHHHHhc--CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCC
Q 013521 148 ISRLQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSP 223 (441)
Q Consensus 148 l~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p 223 (441)
..++..+. .+++.|+.....|.+....+...+ .++..++..+-..+..-+.. .+++++|++++|
T Consensus 120 ~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~------------~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v 187 (407)
T PRK09064 120 DATLSTLAKLIPDCVIFSDELNHASMIEGIRRSR------------CEKHIFRHNDVAHLEELLAAADPDRPKLIAFESV 187 (407)
T ss_pred HHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcC------------CcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCC
Confidence 54455444 478877777777777766666555 34444443211111101111 146789999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC-CcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
+||+|.+.+ +++|.++|++||+++|+||+|+...++.....+....+ ..+.+++++||||.+|++| ||+++++
T Consensus 188 ~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~~~~~~ 261 (407)
T PRK09064 188 YSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG---GYIAGSA 261 (407)
T ss_pred CCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC---ceEecCH
Confidence 999999998 88899999999999999999984333322222222212 1234688999999999888 9999887
Q ss_pred cccccCCchhHHHHHHHHhh-h-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 303 ELRYSNGYPVIKDFNRIVCT-C-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
+++ +.+...... . ..+.++..+.++.+.++.. +.....+++++++++++.+.|++.|+++.+ +.+++
T Consensus 262 ~~~--------~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~i 330 (407)
T PRK09064 262 ALV--------DAVRSYAPGFIFTTSLPPAIAAAALASIRHL--KESNEERERHQERAAKLKAALDAAGIPVMP-NESHI 330 (407)
T ss_pred HHH--------HHHHHhCccccccCcCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCCCE
Confidence 763 444332221 1 2235566666666666421 111334678889999999999988887765 45777
Q ss_pred EEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 381 VWVQFPG-SSSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
+++.++. ....++.+++++++||.+.+..... +.+.+++||++ ..++++++++++.|+++
T Consensus 331 v~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~ 394 (407)
T PRK09064 331 VPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEV 394 (407)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 8887753 2345677777776799999865432 22457899996 45899999999999875
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=230.29 Aligned_cols=279 Identities=14% Similarity=0.125 Sum_probs=192.8
Q ss_pred cHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCcccee
Q 013521 116 NMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNI 194 (441)
Q Consensus 116 ~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v 194 (441)
..++++.+|+++ +++ .+++++|+++++.. +..++++||.|+++.+.|.+....++..| .++
T Consensus 53 ~~~~~e~lA~~~----g~~--~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g------------~~~ 114 (370)
T TIGR02539 53 IHDFLEDLAEFL----GMD--EARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAG------------LNV 114 (370)
T ss_pred HHHHHHHHHHHh----CCC--ceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcC------------CEE
Confidence 567888899886 654 56678999999987 67778999999999999877767777777 588
Q ss_pred EEeecCCCCCccCCCCC-----C-------CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC
Q 013521 195 VYMNCRPENNFFPDLST-----T-------SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD 262 (441)
Q Consensus 195 ~~v~~~~~~~~~~~~~~-----~-------~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~ 262 (441)
+.++.+.+.++..|++. . .++++|++++|+||||...+ +++|+++|+++|+++|+||+|+....
T Consensus 115 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~- 190 (370)
T TIGR02539 115 KEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRM- 190 (370)
T ss_pred EEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCc-
Confidence 88887643333344321 1 26789999999999999888 78888999999999999999996321
Q ss_pred CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhh-c-------CCCcHHHHHH
Q 013521 263 PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTC-F-------NGASNIVQAG 334 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~a 334 (441)
+.+.... +..++++||||+++ +|.|+||++++++++ +.+....... . .......+.+
T Consensus 191 --~~~~~~~----~~di~v~s~sK~~~-~~g~~G~l~~~~~~i--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (370)
T TIGR02539 191 --PVSAKEI----GADFIVGSGHKSMA-ASGPCGVLGMSEEWE--------DIVLRKSRYSPVKEVELLGCTSRGAPIVT 255 (370)
T ss_pred --CCCHHHc----CCCEEEeeCccccc-CCCCEEEEEECHHHH--------hhhcccccCCccceeeeecccccccHHHH
Confidence 2222222 23478899999998 778999999998874 3333322110 0 0111113333
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeee--CCCCceEEEEEcCCC---------ChHHHHHHHHHhcCe
Q 013521 335 GLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN--GGKNAPYVWVQFPGS---------SSWDVFAEILEKTHI 403 (441)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gi 403 (441)
+.+++.+ ..++++...+.++. ++++.+.|+++|+++. .++.++|++++++.. ....+.+.|. ++||
T Consensus 256 ~~~al~~-~~~~l~~~~~~~~~-~~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~-e~GI 332 (370)
T TIGR02539 256 MMASFPH-VVERVKRWDEEVKK-TRWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELK-KRGI 332 (370)
T ss_pred HHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHH-hCCC
Confidence 4444431 12334444444444 4589999999998763 356788999998632 1223555554 5599
Q ss_pred E-EeCCCCcCCCCCCeEEEEe-ecCHHHHHHHHHHHHhh
Q 013521 404 L-TIPGSGFGPGGNEHIRVSA-FGHREYISEACRRLKNF 440 (441)
Q Consensus 404 ~-v~pg~~f~~~~~~~iRls~-~~~~~~~~~~l~~l~~~ 440 (441)
. +++| .++++|+++ ..++++++++++.|+++
T Consensus 333 ~~ir~~------~~~~iRis~~~~t~e~i~~l~~~L~~~ 365 (370)
T TIGR02539 333 HGIRSG------QTKYFKLSVYGLTKEQVEYVVDSFEEI 365 (370)
T ss_pred ccccCC------cceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 7 5542 256999995 45899999999999875
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=232.38 Aligned_cols=338 Identities=16% Similarity=0.131 Sum_probs=225.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC----CCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG----AEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSD 147 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~a 147 (441)
+++.|+.+... +.|+.+.+++.+.+...........|. ...-..++|+++|+++ +. ++++|++|+|++++
T Consensus 23 ~~iYld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~~v~~t~g~t~~ 97 (406)
T PRK09295 23 PLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFI----NARSAEELVFVRGTTEG 97 (406)
T ss_pred ceEEEeCcccc-cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHc----CcCCCCeEEEeCCHHHH
Confidence 57888888754 477889999999886532111111111 0123567888888886 65 67899999999999
Q ss_pred HHHH-HH----hcCCCCEEEEeCCCchhh----HhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCc
Q 013521 148 ISRL-QM----LLGSNVTVAVQDPSFPAY----IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRT 215 (441)
Q Consensus 148 l~~l-~~----l~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~ 215 (441)
++++ .. ++++||+|++.+++|++. ...++..| .+++.++.+.++..+.+ +++ .+++
T Consensus 98 l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g------------~~v~~v~~~~~~~~d~~~l~~~i~~~t 165 (406)
T PRK09295 98 INLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVG------------AELRVIPLNPDGTLQLETLPALFDERT 165 (406)
T ss_pred HHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcC------------cEEEEEecCCCCCCCHHHHHHhcCCCc
Confidence 9974 33 468999999999988764 33334455 58888888754332221 221 3689
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+++++++|+||||.++| +++|+++|+++|+++++|++|+.... +..+... +..+++.|++|.+|.+| +
T Consensus 166 ~lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~---~~~~~~~----~~D~~~~s~~K~~gp~G--~ 233 (406)
T PRK09295 166 RLLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMHH---PVDVQAL----DCDFYVFSGHKLYGPTG--I 233 (406)
T ss_pred EEEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccCcc---ccCchhc----CCCEEEeehhhccCCCC--c
Confidence 99999999999999999 78899999999999999999974321 2333222 33589999999888555 8
Q ss_pred EEEEeeccccccCCchhH-----------HH--HH-HHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 296 GWTVVPEELRYSNGYPVI-----------KD--FN-RIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~-----------~~--~~-~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
||++++++.+....+... .. +. ........+.+.....++.++++.......++.+++.++.++++
T Consensus 234 G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l 313 (406)
T PRK09295 234 GILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYA 313 (406)
T ss_pred EEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 999998876421100000 00 00 00011122344444444444443111112366778888888999
Q ss_pred HHHHHhC-CCeeeCCC-CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC------CCCCeEEEEe--ecCHHHHH
Q 013521 362 VDAFQSL-GLKVNGGK-NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP------GGNEHIRVSA--FGHREYIS 431 (441)
Q Consensus 362 ~~~L~~~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~iRls~--~~~~~~~~ 431 (441)
.+.|.++ ++++..+. .+..+.+.+++....++... |+++||.++.|..+.. ..++.+|+|+ +++++|++
T Consensus 314 ~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~-L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did 392 (406)
T PRK09295 314 LSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSF-LDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD 392 (406)
T ss_pred HHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHH-HHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHH
Confidence 9999887 78776542 24566677776556666554 5677999999886532 1246899996 67999999
Q ss_pred HHHHHHHhh
Q 013521 432 EACRRLKNF 440 (441)
Q Consensus 432 ~~l~~l~~~ 440 (441)
.+++.|+++
T Consensus 393 ~l~~~l~~i 401 (406)
T PRK09295 393 RLVAGLQRI 401 (406)
T ss_pred HHHHHHHHH
Confidence 999999875
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=228.25 Aligned_cols=305 Identities=17% Similarity=0.137 Sum_probs=210.5
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCE
Q 013521 82 TTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVT 160 (441)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~ 160 (441)
+++++|+.+++++.+++.. . ..|++.....++++.+++++ + ++++++++|+++++.+ +..++++||.
T Consensus 6 ~~~~~~~~v~~a~~~~~~~----~--~~~~~~~~~~~l~~~~a~~~----g--~~~~~~~~~gt~a~~~~~~~l~~~gd~ 73 (338)
T cd06502 6 TVTGPTPEMLEAMAAANVG----D--DVYGEDPTTAKLEARAAELF----G--KEAALFVPSGTAANQLALAAHTQPGGS 73 (338)
T ss_pred cCCCCCHHHHHHHHhcccC----C--cccCCCHHHHHHHHHHHHHh----C--CCeEEEecCchHHHHHHHHHhcCCCCe
Confidence 4456788899999886532 1 25766777888999998886 5 5678888888899887 6777899999
Q ss_pred EEEeCCCchhhHh---HHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C-------CCccEEEEcCCCC
Q 013521 161 VAVQDPSFPAYID---TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T-------SRTDIIFFCSPNN 225 (441)
Q Consensus 161 Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~-------~~~~~v~i~~p~N 225 (441)
|+++.|+|..+.. .....| .+++.++.+. . ..++++ . +++++|++++|+|
T Consensus 74 v~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-~--~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n 138 (338)
T cd06502 74 VICHETAHIYTDEAGAPEFLSG------------VKLLPVPGEN-G--KLTPEDLEAAIRPRDDIHFPPPSLVSLENTTE 138 (338)
T ss_pred EEEecCcceeeecCCcHHHHcC------------ceEEeecCCC-C--cCCHHHHHHHhhccCCCcCCcceEEEEEeecC
Confidence 9999999976543 234456 4777787643 2 233221 1 2689999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE-EEeeccc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW-TVVPEEL 304 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~-l~~~~~~ 304 (441)
| |.+++.+++++|+++|++||+++|+|++|..+.......++.......+ +++.|+||++++|| |+ +++++++
T Consensus 139 ~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~~~~~~---g~~~~~~~~~ 212 (338)
T cd06502 139 G-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVD--SVSFCLSKGGGAPV---GAVVVGNRDF 212 (338)
T ss_pred C-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCC--EEEEeccccCCCcc---ceEEECCHHH
Confidence 7 7777999999999999999999999999864432111113333221122 56889999999887 54 4566666
Q ss_pred cccCCchhHHHHHHHHhhh--cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTC--FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVW 382 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 382 (441)
.+.+....... ....+.+.+.++.+.|++..+ .+..+++.++++++.+.|+++|+.+.+ ..++++.
T Consensus 213 --------~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~ 280 (338)
T cd06502 213 --------IARARRRRKQAGGGMRQSGFLAAAGLAALENDLW---LRRLRHDHEMARRLAEALEELGGLESE-VQTNIVL 280 (338)
T ss_pred --------HHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHHHHhcCCCccc-ccCCeEE
Confidence 34444433221 223566777878888875433 345577778889999999988776554 4677778
Q ss_pred EEcCCCChHHHHHHHHH------hcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHh
Q 013521 383 VQFPGSSSWDVFAEILE------KTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKN 439 (441)
Q Consensus 383 ~~~~~~~~~~~~~~ll~------~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~ 439 (441)
++++.. ......+.+ ++|+.+.+.. .++||++. ..+++++++++++|++
T Consensus 281 v~~~~~--~~~~~~l~~~l~~~~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 281 LDPVEA--NAVFVELSKEAIERRGEGVLFYAWG------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred EecCCc--cHHHHHHHHHHHHhhhCCEEEEecC------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 877532 222233322 4599987742 27899996 3489999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=232.72 Aligned_cols=334 Identities=14% Similarity=0.109 Sum_probs=221.6
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC----CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA----EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.|+.+..+ ++|+.+.+++.+.+........ ..|.. ..-..++|+.+|+++ +.++++|++|+|+++++..
T Consensus 2 ~yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~i~~~~g~t~a~~~ 75 (381)
T PRK02948 2 IYLDYAATT-PMSKEALQTYQKAASQYFGNES-SLHDIGGTASSLLQVCRKTFAEMI----GGEEQGIYFTSGGTESNYL 75 (381)
T ss_pred EeccCCCCC-CCCHHHHHHHHHHHHhcCCCCc-cccHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCcHHHHHHH
Confidence 455555543 4678899999988865421111 11110 122456677777775 7889999999999999886
Q ss_pred -HHHhc----CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcC
Q 013521 151 -LQMLL----GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCS 222 (441)
Q Consensus 151 -l~~l~----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~ 222 (441)
+..++ ++||.|++..+.|+++......+...| .+++.++++.++..+.+ +++ .+++++|++++
T Consensus 76 ~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g---------~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~ 146 (381)
T PRK02948 76 AIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQG---------YTVTEIPVDKSGLIRLVDLERAITPDTVLASIQH 146 (381)
T ss_pred HHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCC---------CEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEEC
Confidence 44454 578999999988877665554433222 48888888754322221 222 35788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|+||||.++| +++|.++|+++|+++++|+++. +.. .+..+.. .+.++++.|+||.+|.+| +|++++++
T Consensus 147 ~~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~-~g~--~~~~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~~~ 214 (381)
T PRK02948 147 ANSEIGTIQP---IAEIGALLKKYNVLFHSDCVQT-FGK--LPIDVFE----MGIDSLSVSAHKIYGPKG--VGAVYINP 214 (381)
T ss_pred CcCCcEeehh---HHHHHHHHHHcCCEEEEEChhh-ccc--cccCccc----CCCCEEEecHHhcCCCCc--EEEEEEcC
Confidence 9999999999 7789999999999999998765 221 1222222 235688999999998777 89988877
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCce---
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAP--- 379 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--- 379 (441)
+...... .............+++.+.+.++.++++. ..+++++.+++.++.++++.+.|+++|+++.......
T Consensus 215 ~~~~~~~---~~~~~~~~~~~~~t~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~ 290 (381)
T PRK02948 215 QVRWKPV---FPGTTHEKGFRPGTVNVPGIAAFLTAAEN-ILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCL 290 (381)
T ss_pred CCCCCCc---ccCCCCCCCcCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCc
Confidence 6410000 00000001112345777888878777763 2245688889999999999999998876554321122
Q ss_pred --EEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC-----------------CCCCeEEEEe--ecCHHHHHHHHHHHH
Q 013521 380 --YVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP-----------------GGNEHIRVSA--FGHREYISEACRRLK 438 (441)
Q Consensus 380 --~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----------------~~~~~iRls~--~~~~~~~~~~l~~l~ 438 (441)
.+.+.+++.+..++...| +++||.+++|+.+.. ...++||+|+ ++++++++++++.|+
T Consensus 291 ~~i~~~~~~~~~~~~~~~~l-~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~ 369 (381)
T PRK02948 291 PHIIGVTIKGIEGQYTMLEC-NRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALE 369 (381)
T ss_pred CCEEEEEeCCCCHHHHHHhc-ccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 233344544556666665 566999999885321 1247899997 458999999999998
Q ss_pred hh
Q 013521 439 NF 440 (441)
Q Consensus 439 ~~ 440 (441)
++
T Consensus 370 ~~ 371 (381)
T PRK02948 370 TI 371 (381)
T ss_pred HH
Confidence 75
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=230.80 Aligned_cols=333 Identities=18% Similarity=0.181 Sum_probs=219.9
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHH-hhccC-CCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHA-FALST-VKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~-~~~~~-~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.++|..++.. .++.+.+++.+.+ ..+.. .++...|....+...+++.+++++.+.++.+..+|++++| ++++.+
T Consensus 20 ~~~~~~~~~~~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sg-t~a~~~ 96 (402)
T cd00378 20 ETLELIASENF--TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSG-SQANLA 96 (402)
T ss_pred hCeeeeccCCc--CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCc-HHHHHH
Confidence 46888777653 4788999998765 23321 1233346566677788887766665556777666777765 578776
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhH-----HHHhccccccccccCccceeEEeecCCCC-CccCCCCC------CCCccE
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDT-----SVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDLST------TSRTDI 217 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~g~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~------~~~~~~ 217 (441)
+..+++|||+|++++|+|+++... +...| .++..++++.+. ++..|++. .+++++
T Consensus 97 ~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~ 164 (402)
T cd00378 97 VYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASG------------KLFESVPYGVDPETGLIDYDALEKMALEFKPKL 164 (402)
T ss_pred HHHHhcCCCCEEEEecCccCccccccccccccccc------------eeEEEecCCcCcccCCcCHHHHHHHHHhCCCCE
Confidence 677889999999999999877543 33344 355556554321 23344332 257899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccc-cccccCCC-CCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAY-AAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~-~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+++++|+||+ ..+ +++|+++|++||++||+|++| ..+.+.+. +.++. . . .++++|+||++ +|+|.
T Consensus 165 v~~~~~~~~~--~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~---~-~--dv~~~s~sK~l--~G~~g 231 (402)
T cd00378 165 IVAGASAYPR--PID---FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP---G-A--DVVTTTTHKTL--RGPRG 231 (402)
T ss_pred EEecCcccCC--CcC---HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc---C-C--cEEEeccccCC--CCCCc
Confidence 9998998874 344 889999999999999999996 33433332 22221 1 2 27899999987 78999
Q ss_pred EEEEeec-cccccCCchhHHHHHHHHhhhcCCCcHHHHH-HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013521 296 GWTVVPE-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQA-GGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN 373 (441)
Q Consensus 296 G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 373 (441)
||+++++ ++ .+.+.........+.+.+.+. ++..++......+.++.+++++++++++.+.|+++|+.+.
T Consensus 232 g~i~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 303 (402)
T cd00378 232 GLILTRKGEL--------AKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVV 303 (402)
T ss_pred eEEEeccHHH--------HHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEe
Confidence 9999987 55 345544333222222322222 2222222111124567778899999999999999888875
Q ss_pred -CCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCC----cCCCCCCeEEEEeec------CHHHHHHHHHHHHhhC
Q 013521 374 -GGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSG----FGPGGNEHIRVSAFG------HREYISEACRRLKNFL 441 (441)
Q Consensus 374 -~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~----f~~~~~~~iRls~~~------~~~~~~~~l~~l~~~l 441 (441)
.+.+++++|+++++ ..+.+.+..+++++||.+.++.. +++...+++|+++.. +.++++++++.|++++
T Consensus 304 ~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~ 383 (402)
T cd00378 304 SGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARAL 383 (402)
T ss_pred ecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 35678999999973 22334555667788999986432 112245789999632 5899999999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=224.14 Aligned_cols=340 Identities=21% Similarity=0.199 Sum_probs=242.4
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC----cCcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE----QGNMALRTAIADKFYKDMGIEG-DEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~----~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~ 145 (441)
+++++.|+...... .|..+.+++.+....+....+...|... .-+.+.|+.+|+++ +.++ ++|++|.|+|
T Consensus 20 ~~~~vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~----~a~~~~eIvft~~tT 94 (405)
T COG0520 20 GKPLVYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFL----NADSSDEIVFTRGTT 94 (405)
T ss_pred CCCeEEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHh----CCCCCCeEEEeCChh
Confidence 45688888777654 7899999999998776533333333322 24577888888886 8885 9999999999
Q ss_pred HHHHHH-HHh---cCCCCEEEEeCCCchhhHhHHHHhccc-cccccccCccceeEEeecCCCCCccCC-CC--CCCCccE
Q 013521 146 SDISRL-QML---LGSNVTVAVQDPSFPAYIDTSVIVGQA-GKFLKETGKYRNIVYMNCRPENNFFPD-LS--TTSRTDI 217 (441)
Q Consensus 146 ~al~~l-~~l---~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~--~~~~~~~ 217 (441)
++++++ ..+ +++||+|++..-.|++....+..+..+ | ++++.+|+++++.+..+ ++ ..++||+
T Consensus 95 ~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~G---------a~v~~i~~~~~g~~~~~~~~~~i~~~Tkl 165 (405)
T COG0520 95 EALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTG---------AKVRVIPLDDDGLLDLDALEKLITPKTKL 165 (405)
T ss_pred HHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcC---------cEEEEEecCCCCCcCHHHHHHhcCCCceE
Confidence 999984 555 689999999999998876655555433 3 48999999855444333 22 1478999
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCc-ccCCccceeE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSK-FAGFTGVRLG 296 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK-~~~~~G~r~G 296 (441)
|.+++.+|.||++.| +++|+++|+++|+++++|.+++--+. +..+..+ +..++..|.+| .+| | ..+|
T Consensus 166 vais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~~h~---~idv~~l----~~Df~afsgHKwl~g-P-~GiG 233 (405)
T COG0520 166 VALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAAGHL---PIDVQEL----GCDFLAFSGHKWLLG-P-TGIG 233 (405)
T ss_pred EEEECccccccccch---HHHHHHHHHHcCCEEEEECccccCcc---CCCchhc----CCCEEEEcccccccC-C-CceE
Confidence 999999999999999 99999999999999999999873111 3333333 55699999999 555 4 3499
Q ss_pred EEEeeccccccCCch-----------------hHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 013521 297 WTVVPEELRYSNGYP-----------------VIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAK 359 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (441)
.++++++++....+. ......+....+.+....+...++...+... .++.+.++-++..+
T Consensus 234 vLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~i---g~~~i~~~e~~L~~ 310 (405)
T COG0520 234 VLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEI---GMEAIEAHERELTE 310 (405)
T ss_pred EEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence 999999886331110 0001111111111112222223333333332 25778888888899
Q ss_pred HHHHHHHhC-CCeeeCCC---CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCC------CCCeEEEEe--ecCH
Q 013521 360 IIVDAFQSL-GLKVNGGK---NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG------GNEHIRVSA--FGHR 427 (441)
Q Consensus 360 ~l~~~L~~~-g~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~------~~~~iRls~--~~~~ 427 (441)
++.+.|+++ +++++.++ .+..+.+.+++....++...|.++ ||.++.|..+... -...+|+|+ +++.
T Consensus 311 ~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~-gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~ 389 (405)
T COG0520 311 YLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEK-GIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTE 389 (405)
T ss_pred HHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhC-CeEEEeccccccHHHHhcCCCCceEEEEeecCCH
Confidence 999999988 78887764 477888899887778887777665 8999999877532 244599996 7799
Q ss_pred HHHHHHHHHHHhh
Q 013521 428 EYISEACRRLKNF 440 (441)
Q Consensus 428 ~~~~~~l~~l~~~ 440 (441)
+|++++++.|+++
T Consensus 390 edid~l~~aL~~~ 402 (405)
T COG0520 390 EDVDRLLEALKKA 402 (405)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=230.78 Aligned_cols=334 Identities=15% Similarity=0.128 Sum_probs=219.1
Q ss_pred CCCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCC--CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKG--YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
++..+++|+.+++ ++...|.+.+++.+++.+++.... ...+.......+|++.+|+++ +. +.+++++|+++
T Consensus 52 ~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~----g~--~~~~~~~sG~~ 125 (407)
T PRK07179 52 PGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT----GF--ESCLLCQSGWA 125 (407)
T ss_pred CCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh----CC--CcEEEECCHHH
Confidence 3456889988875 677889999999999987643221 111222235678888899886 54 46678889999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCC
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNN 225 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~N 225 (441)
|+.. +..++.+||.|+++.+.|.++...+...| .+++.++..+-+.+...+ ...++++|++++|+|
T Consensus 126 An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g------------~~~~~~~~~d~~~l~~~l-~~~~~~lV~v~~v~n 192 (407)
T PRK07179 126 ANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAG------------AQAHPFRHNDVDHLRRQI-ERHGPGIIVVDSVYS 192 (407)
T ss_pred HHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCC------------CeEEEecCCCHHHHHHHH-HhcCCeEEEECCCCC
Confidence 9887 67788999999999999998877777776 355554432111111001 112467888889999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc-ccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY-EIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~-~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
|||.++| +++|.++|++||+++|+||+|+....+....++. .++-.+..++++.|+||.+| + |+||+++++++
T Consensus 193 ~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g-~--~~G~l~~~~~~ 266 (407)
T PRK07179 193 TTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA-G--RAGIITCPREL 266 (407)
T ss_pred CCCcccc---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh-c--cCeEEEeCHHH
Confidence 9999999 7889999999999999999998533332222222 22211223588999999996 2 69999998776
Q ss_pred cccCCchhHHHHHHHHhh-hcCCC-cHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEE
Q 013521 305 RYSNGYPVIKDFNRIVCT-CFNGA-SNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVW 382 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 382 (441)
+ +.+...... .+.++ ++....++.++++. ....+..+++++++++++.+.|+++|+++.. .+++++
T Consensus 267 ~--------~~~~~~~~~~~~~~t~~~~~~aa~~aal~~--~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~~--~~~i~~ 334 (407)
T PRK07179 267 A--------EYVPFVSYPAIFSSTLLPHEIAGLEATLEV--IESADDRRARLHANARFLREGLSELGYNIRS--ESQIIA 334 (407)
T ss_pred H--------HHHHHhCcCeeeCCCCCHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHcCCCCCC--CCCEEE
Confidence 3 333322111 12222 22222223333431 1122457788999999999999988877653 567888
Q ss_pred EEcCCCChHHHHHHHHHhcCeEEeCCCC-cCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 383 VQFPGSSSWDVFAEILEKTHILTIPGSG-FGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 383 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~-f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+.++.....+.+...+.++||.+..-.. ..+.+.+++||++. .+++++++++++|+++
T Consensus 335 l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~ 395 (407)
T PRK07179 335 LETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREA 395 (407)
T ss_pred EEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 8875322334444445556998432100 01223579999984 4899999999999875
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=224.79 Aligned_cols=314 Identities=15% Similarity=0.125 Sum_probs=208.2
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCCC---CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCC
Q 013521 82 TTQPIPDIITSAMAEHAFALSTVKG---YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGS 157 (441)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~ 157 (441)
++.+..+.+.+++.+.-..+...+. ...+...+-..++++.+|+++ |+ +++++|+|+++++.+ +..++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~--~~i~~~~g~t~al~~~l~~~~~~ 82 (361)
T cd06452 9 RGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL----GM--DEARVTPGAREGKFAVMHSLCEK 82 (361)
T ss_pred cCCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc----CC--ceEEEeCCHHHHHHHHHHHhcCC
Confidence 4456677777777776643332111 111112234678899999986 66 799999999999997 6777899
Q ss_pred CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C-------CCccEEEEcCCCC
Q 013521 158 NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T-------SRTDIIFFCSPNN 225 (441)
Q Consensus 158 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~-------~~~~~v~i~~p~N 225 (441)
||+|+++.++|.+....+...| .+++.++.+.++.+..+++. . ++++++++++|+|
T Consensus 83 gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n 150 (361)
T cd06452 83 GDWVVVDGLAHYTSYVAAERAG------------LNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDG 150 (361)
T ss_pred CCEEEEcCCcchHHHHHHHhcC------------CEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCC
Confidence 9999999999888877777777 58899988765433333221 1 3688999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~ 305 (441)
|||...+ +++|+++|+++|+++|+|++|..... +.+...+ +..++++|+||+++ ++.|+||++++++++
T Consensus 151 ~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~---~~~~~~~----~~d~~~~s~~K~l~-~~~~~G~l~~~~~~~ 219 (361)
T cd06452 151 NYGNLHD---AKKIAKVCHEYGVPLLLNGAYTVGRM---PVSGKEL----GADFIVGSGHKSMA-ASAPIGVLATTEEWA 219 (361)
T ss_pred CCeeecc---HHHHHHHHHHcCCeEEEECCcccCCc---CCCHHHc----CCCEEEecCCcccc-CCCCeEEEEECHHHH
Confidence 9998877 88999999999999999999983211 2222222 34599999999997 667999999988774
Q ss_pred ccCCchhHHHHHHHHhh------h-cCCCc-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC--
Q 013521 306 YSNGYPVIKDFNRIVCT------C-FNGAS-NIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNG-- 374 (441)
Q Consensus 306 ~~~~~~~~~~~~~~~~~------~-~~~~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-- 374 (441)
+.+...... . ..+.+ ...+.++.+.+.. ..++++...+ ..++++++.+.|+++ |+++..
T Consensus 220 --------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~-~~~~~~~l~~~L~~l~g~~v~~~~ 289 (361)
T cd06452 220 --------DIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPH-VKERVKRWDE-EVEKARWFVAELEKIEGIKQLGEK 289 (361)
T ss_pred --------HHHhccccccccceeeeeccccCchHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHhcCCCeEEECCC
Confidence 333322211 0 00111 1112222333321 0122333222 234457889999988 888762
Q ss_pred CCCceEEEEEcCCC---------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-ecCHHHHHHHHHHHHhh
Q 013521 375 GKNAPYVWVQFPGS---------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-FGHREYISEACRRLKNF 440 (441)
Q Consensus 375 ~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~~~~~~~~~~l~~l~~~ 440 (441)
+...+++.++.+.. ...++.+.|+++ ||.+.+ ....+++|++. ..++++++.+++.|+++
T Consensus 290 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~~~~-----~~~~~~~ri~~~g~~~e~~~~l~~al~~~ 359 (361)
T cd06452 290 PKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKR-GIHGIK-----PGLTRYFKLSTYGLTWEQVEYVVDAFKEI 359 (361)
T ss_pred CCCCceEEEEcCCcchhhhhccccchhHHHHHHHc-CceEEc-----CCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 34566777776521 122466777654 998532 22345899997 45899999999999875
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=228.64 Aligned_cols=334 Identities=18% Similarity=0.180 Sum_probs=221.5
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCC--CCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGY--KGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
.++++|+.+++ ++..+|.+.+++.+.+.+++..... .-|+......+|++++|+++ +. ++.+++++| +++.
T Consensus 45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~----g~-~~~l~~~sG-~~an 118 (402)
T TIGR01821 45 KDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLH----GK-ESALVFTSG-YVAN 118 (402)
T ss_pred eeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHh----CC-CeEEEECch-HHHH
Confidence 46899999985 6788999999999999876532211 12333445678888888886 53 456666666 4454
Q ss_pred H-HHHHhcC--CCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCC
Q 013521 149 S-RLQMLLG--SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSP 223 (441)
Q Consensus 149 ~-~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p 223 (441)
. ++..+.. +++.|+.....|......+...| .++..++..+...+..-+.. ..++++|++++|
T Consensus 119 ~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~ 186 (402)
T TIGR01821 119 DATLATLAKIIPGCVIFSDELNHASMIEGIRHSG------------AEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESV 186 (402)
T ss_pred HHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcC------------CeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCC
Confidence 4 3554443 77777777667766666666555 34444443211111000111 135789999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC-CcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
+||||.+.+ +++|.++|++||+++|+||+|+...+......+....+ .++.+++++||||.+|++| ||+++++
T Consensus 187 ~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~i~~~~ 260 (402)
T TIGR01821 187 YSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GYIAASR 260 (402)
T ss_pred CCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ceeecCH
Confidence 999999999 88999999999999999999984333322222222111 1233588999999999888 9999887
Q ss_pred cccccCCchhHHHHHHHHhh--hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 303 ELRYSNGYPVIKDFNRIVCT--CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++ ++.+...... ...+.++..+.++.++++.... ...+++..+++++++.+.|+++|+++.++ .+++
T Consensus 261 ~~--------~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~i 329 (402)
T TIGR01821 261 KL--------IDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKE--SQDLRRAHQENVKRLKNLLEALGIPVIPN-PSHI 329 (402)
T ss_pred HH--------HHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHHHcCCCcCCC-CCCE
Confidence 76 3444432221 1223566677777777752111 14455667788999999999888877654 5667
Q ss_pred EEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 381 VWVQFPGS-SSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
+++.++.. ...++.+.+++++||.+.+..... +.+..++||++ ..++++++++++.|+++
T Consensus 330 ~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~ 393 (402)
T TIGR01821 330 VPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLV 393 (402)
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 77776531 245677777777799999865433 23457899997 56899999999999875
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=226.03 Aligned_cols=331 Identities=16% Similarity=0.148 Sum_probs=217.9
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcC----cHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQG----NMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
.+.|..+.+. ++|+.+.+++.+.+..... .....|....+ ..++|+.+++++ ++++++|++++|+++++.
T Consensus 18 ~~yl~~~~~~-~~p~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ia~~~----~~~~~~v~~~~~~t~~l~ 91 (397)
T TIGR01976 18 RVFFDNPAGT-QIPQSVADAVSAALTRSNA-NRGGAYESSRRADQVVDDAREAVADLL----NADPPEVVFGANATSLTF 91 (397)
T ss_pred eEEecCCccC-CCCHHHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHHHHHHHHHHHc----CCCCCeEEEeCCHHHHHH
Confidence 6888877665 4678899999998865421 11223543333 357777787775 777778999999999987
Q ss_pred H-HHH---hcCCCCEEEEeCCCchhhHh----HHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCcc
Q 013521 150 R-LQM---LLGSNVTVAVQDPSFPAYID----TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTD 216 (441)
Q Consensus 150 ~-l~~---l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~ 216 (441)
. +.. .+++||+|++.+|+|++... .++..| .+++.++.+.++ +..+++ . .++++
T Consensus 92 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g------------~~~~~~~~~~~~-~~~~~~~l~~~i~~~~~ 158 (397)
T TIGR01976 92 LLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAG------------AKVKWARVDEAT-GELHPDDLASLLSPRTR 158 (397)
T ss_pred HHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcC------------CEEEEEeccccC-CCcCHHHHHHhcCCCce
Confidence 6 333 36899999999999987643 334455 488888886532 223322 2 35789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
++++++|+||||.+++ +++|+++|++||+++|+|+++.. ...+..+... +..+++.|++|++| .|+|
T Consensus 159 lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~---~~~~~~~~~~----~~d~~~~s~~K~~g---~~~G 225 (397)
T TIGR01976 159 LVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYA---PHGLIDVQAT----GADFLTCSAYKFFG---PHMG 225 (397)
T ss_pred EEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhc---cccCCCHHHc----CCCEEEEechhhcC---CceE
Confidence 9999999999999998 88999999999999999999752 1112222222 33477899999985 3689
Q ss_pred EEEeeccccccCCchhHHH-HHH-HHhhhcCCCc---HHHHHHHHHhcCCCcH-----------HHHHHHHHHHHHHHHH
Q 013521 297 WTVVPEELRYSNGYPVIKD-FNR-IVCTCFNGAS---NIVQAGGLACLSPDGF-----------QALRTVIDYYKENAKI 360 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~---~~~~~a~~~~l~~~~~-----------~~~~~~~~~~~~~~~~ 360 (441)
|++++++++..-....... +.. .......+.+ ..+..+++..+.+.+. ..+++.+++..+.+++
T Consensus 226 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (397)
T TIGR01976 226 ILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEY 305 (397)
T ss_pred EEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987742110000000 000 0000001122 2234444555543221 1256677777888889
Q ss_pred HHHHHHhC-CCeeeCC----CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcC---------CCCCCeEEEEe--e
Q 013521 361 IVDAFQSL-GLKVNGG----KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFG---------PGGNEHIRVSA--F 424 (441)
Q Consensus 361 l~~~L~~~-g~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---------~~~~~~iRls~--~ 424 (441)
+.+.|+++ ++++..+ ..++++.+.+++.+..++.++|. ++||.++.|..|. +...++||+|+ +
T Consensus 306 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 384 (397)
T TIGR01976 306 LLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLA-DQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHY 384 (397)
T ss_pred HHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHH-HCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeecc
Confidence 99999887 4877653 24667888777555666777665 4599999887653 12356899997 5
Q ss_pred cCHHHHHHHHHHH
Q 013521 425 GHREYISEACRRL 437 (441)
Q Consensus 425 ~~~~~~~~~l~~l 437 (441)
+++++++++++.|
T Consensus 385 ~t~~di~~l~~~l 397 (397)
T TIGR01976 385 NTAEEVDRLLEAL 397 (397)
T ss_pred CCHHHHHHHHHhC
Confidence 6899999998764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=231.98 Aligned_cols=340 Identities=12% Similarity=0.097 Sum_probs=219.6
Q ss_pred CCCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcH
Q 013521 70 PDARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~ 145 (441)
.+++++||..|. ..+. .++.+.+++.+.+.+... ....|.++.+ .+|.+.+++++ +. ++++|++++|++
T Consensus 41 dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~--~~~~~~~~~~-~~la~~l~~~~----~~~~~~~v~~~~sgs 113 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGH--VSNLFATEPQ-IALAERLVELL----GAPEGGRVFFCNSGA 113 (398)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccC--ccCccCCHHH-HHHHHHHHHhC----CCCCCCEEEEeCchH
Confidence 356789998764 2333 478999999999986532 2234644322 45555555543 43 357999999999
Q ss_pred HHHHH-HHHhcCCC-CEEEEeCCCchhhHhHHHHhccc-cccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcC
Q 013521 146 SDISR-LQMLLGSN-VTVAVQDPSFPAYIDTSVIVGQA-GKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCS 222 (441)
Q Consensus 146 ~al~~-l~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~-~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~ 222 (441)
+++.. +..+..+| +.|+..+++|+++.......+.. ...........++..+|..+-+.+...+ .+++++|+++.
T Consensus 114 ea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~aviiep 191 (398)
T PRK03244 114 EANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAV--DDDTAAVFLEP 191 (398)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhh--cCCeEEEEEec
Confidence 99987 44333455 56777788999875544433211 0000000000123444432111111001 25788988888
Q ss_pred CCCccccCCCHHH-HHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 223 PNNPTGHAATWQQ-LKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 223 p~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
++||||.+++.++ +++|.++|++||+++|+||+|..|...+.........-.+| +.+|||.++ +|+|+||++++
T Consensus 192 ~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pD----i~t~sK~l~-~G~~ig~~~~~ 266 (398)
T PRK03244 192 IQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPD----VVTLAKGLG-GGLPIGACLAF 266 (398)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCC----EEEEchhhh-CCcccEEEEEc
Confidence 8999999997655 99999999999999999999987655442211111111234 348899998 99999999999
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee--eCCCCce
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV--NGGKNAP 379 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~ 379 (441)
+++. +.+.........+.+++.+.++.+.++.... +...++.+++.+.+.+.|++++... .....|+
T Consensus 267 ~~~~--------~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~ 335 (398)
T PRK03244 267 GPAA--------DLLTPGLHGSTFGGNPVACAAALAVLDTIAS---EGLLENAERLGEQLRAGIEALGHPLVDHVRGRGL 335 (398)
T ss_pred HHHH--------hhccCCCCcCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhcCCCceeeEeeccE
Confidence 8863 3343222333446788999999988762111 3455677777888888888764321 1123688
Q ss_pred EEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 380 YVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 380 ~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
++|+.++......+..++++ +||.+.|. +.+.||++. ..+++++++++++|.+++
T Consensus 336 ~~~i~~~~~~~~~~~~~l~~-~Gv~~~~~------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l 392 (398)
T PRK03244 336 LLGIVLTAPVAKAVEAAARE-AGFLVNAV------APDVIRLAPPLIITDAQVDAFVAALPAIL 392 (398)
T ss_pred EEEEEEeccHHHHHHHHHHH-CCeEEeec------CCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 99999964344566666665 59999873 246899995 458999999999998763
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=225.80 Aligned_cols=328 Identities=16% Similarity=0.172 Sum_probs=222.9
Q ss_pred CCcHHHHHHHHHHHhhcc-CCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHHHHH-HHHh-----cC
Q 013521 85 PIPDIITSAMAEHAFALS-TVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSDISR-LQML-----LG 156 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~-~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~al~~-l~~l-----~~ 156 (441)
++++.+.+++.+.+.... +....+.|+ ..+...+++++++++. .++. ++++|++|+|+++++++ +..+ .+
T Consensus 10 ~~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~-~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~ 87 (382)
T TIGR03403 10 MLDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYK-GINARDLDDIIITSCATESNNWVLKGVYFDEILK 87 (382)
T ss_pred CCCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHH-HcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhccc
Confidence 466789999999887643 323333453 4577889999988864 3454 68999999999999997 4433 25
Q ss_pred C-CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccccCCC
Q 013521 157 S-NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 157 ~-gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~~~~ 232 (441)
+ +++|++..+.|+++......+...| .+++.+++++++.++.+ +++ .++++++++++|+||||.++|
T Consensus 88 ~~~~~vi~~~~e~ps~~~~~~~~~~~G---------~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~ 158 (382)
T TIGR03403 88 GGKNHIITTEVEHPAVRATCAFLESLG---------VEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFP 158 (382)
T ss_pred CCCCEEEEcCCccHHHHHHHHHHHHCC---------CEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccC
Confidence 5 4789999888888766554332222 48889988754333222 222 357899999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchh
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPV 312 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~ 312 (441)
+++|.++|+++|+++++|+++.... .+..+.. .+..+++.|++|++|.+| +|++++++..... +..
T Consensus 159 ---~~~I~~la~~~g~~~ivD~a~~~g~---~~~~~~~----~~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~~--p~~ 224 (382)
T TIGR03403 159 ---IKEIGEICKERGVLFHTDAVQAIGK---IPVDVQK----AGVDFLSFSAHKFHGPKG--VGGLYIRKGVELT--PLF 224 (382)
T ss_pred ---HHHHHHHHHHcCCEEEEechhhcCC---CccCccc----cCCCEEEEcchhhCCCCc--eEEEEECCCCCCC--Ccc
Confidence 6788999999999999999977311 1222221 123488999999988677 6888776654200 000
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCC---ceEEEEEcCCC
Q 013521 313 IKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKN---APYVWVQFPGS 388 (441)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---~~~~~~~~~~~ 388 (441)
.. ..........+++.+.+.++.++++ ...++++...+++++.++++.+.|.++ ++.+..+.. .+++.+.+++.
T Consensus 225 ~g-~~~~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (382)
T TIGR03403 225 HG-GEHMGGRRSGTLNVPYIVAMGEAMR-LANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV 302 (382)
T ss_pred cC-CCCCCCcccCCcChHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC
Confidence 00 0000111123466667766666664 222346777889999999999999886 788775432 45777777766
Q ss_pred ChHHHHHHHHHhcCeEEeCCCCcCCC-----------------CCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 389 SSWDVFAEILEKTHILTIPGSGFGPG-----------------GNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 389 ~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
+..++...| .++||.++.|+.|... ..+.||+|+ +++++|++++++.|+++
T Consensus 303 ~~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~ 372 (382)
T TIGR03403 303 EGEAMLWDL-NKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKA 372 (382)
T ss_pred CHHHHHHhh-ccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 666776664 5669999988765311 136799997 56899999999999865
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=224.66 Aligned_cols=337 Identities=18% Similarity=0.160 Sum_probs=221.6
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC----CcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcHHHHHH
Q 013521 76 RLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA----EQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQSDISR 150 (441)
Q Consensus 76 ~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~~al~~ 150 (441)
.|+.+..++++|+.+.+++.+.+.......+...|.. ..+..++|+.+++++ +.+ +++|++|+|+++++.+
T Consensus 2 yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~g~t~al~~ 77 (376)
T TIGR01977 2 YFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLF----NAPSSAHVVFTNNATTALNI 77 (376)
T ss_pred CccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHh----CcCCCCeEEEeCCHHHHHHH
Confidence 4556666677889999999998876431122233432 256678888998886 664 4599999999999987
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHH----HHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCS 222 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~ 222 (441)
+..++++||+|++..++|+++...+ +..| .+++.++.+.++.++++ ++. .++++++++++
T Consensus 78 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~ 145 (376)
T TIGR01977 78 ALKGLLKEGDHVITTPMEHNSVARPLECLKEQIG------------VEITIVKCDNEGLISPERIKRAIKTNTKLIVVSH 145 (376)
T ss_pred HHHhccCCCCEEEECcchhhHHHHHHHHHHHHcC------------cEEEEEecCCCCCcCHHHHHHhcCCCCeEEEEEC
Confidence 6777899999999999998865433 3335 47888887654322221 211 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|+||||.+++ +++|.++|+++|+++|+|++++.... +..+.. .+..+++.|++|+++.| -.+|.+++.+
T Consensus 146 ~~n~tG~~~~---~~~i~~l~~~~~~~livD~a~~~g~~---~~~~~~----~~~D~~~~s~~K~l~~p-~g~g~l~~~~ 214 (376)
T TIGR01977 146 ASNVTGTILP---IEEIGELAQENGIFFILDAAQTAGVI---PIDMTE----LAIDMLAFTGHKGLLGP-QGTGGLYIRE 214 (376)
T ss_pred CCCCccccCC---HHHHHHHHHHcCCEEEEEhhhccCcc---CCCchh----cCCCEEEecccccccCC-CCceEEEEcC
Confidence 9999999999 67889999999999999999974221 222211 23458999999988633 2467776655
Q ss_pred cccccCCch----hHH-HH---HHH-HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 013521 303 ELRYSNGYP----VIK-DF---NRI-VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKV 372 (441)
Q Consensus 303 ~~~~~~~~~----~~~-~~---~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 372 (441)
+........ ... .+ ... ......+.+.....+..++++.......+.++++.++..+.+.+.|.+. ++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~ 294 (376)
T TIGR01977 215 GIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKI 294 (376)
T ss_pred CcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 531000000 000 00 000 0011122333333333333331111123667778888889999999876 6777
Q ss_pred eCCC----CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC--------CCCCeEEEEe--ecCHHHHHHHHHHHH
Q 013521 373 NGGK----NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP--------GGNEHIRVSA--FGHREYISEACRRLK 438 (441)
Q Consensus 373 ~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------~~~~~iRls~--~~~~~~~~~~l~~l~ 438 (441)
..+. .+..+++.+++.+..++...|.+++||.+.+|..+.. ...+.||+++ ..++++++.++++|+
T Consensus 295 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~ 374 (376)
T TIGR01977 295 YGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALS 374 (376)
T ss_pred eCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHh
Confidence 5431 2567888887666667777766556999999876642 2457899996 558999999999998
Q ss_pred h
Q 013521 439 N 439 (441)
Q Consensus 439 ~ 439 (441)
+
T Consensus 375 ~ 375 (376)
T TIGR01977 375 E 375 (376)
T ss_pred h
Confidence 6
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=220.31 Aligned_cols=321 Identities=13% Similarity=0.123 Sum_probs=207.8
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC--cEEEcCCcHHHHHH-HHHhcCCCC
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD--EIFISDGAQSDISR-LQMLLGSNV 159 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~--~I~~t~G~~~al~~-l~~l~~~gd 159 (441)
+..+++.+.+++.+... .....|. .-..++|+.+++++ +++++ .|++++|+++++.. +..++.+||
T Consensus 7 p~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~la~~~----~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~ 75 (355)
T TIGR03301 7 PLSTSATVRDAMLVDWC-----HWDSEFN--DVTDQVRDRLLALA----GGDDNHTCVLLQGSGTFAVEATIGSLVPRDG 75 (355)
T ss_pred CCCCCHHHHHHhhhhcc-----CCCHHHH--HHHHHHHHHHHHHh----cCCCCCcEEEEeCCcHHHHHHHHHhccCCCC
Confidence 34566777777777221 1111232 34566777777765 77654 68889999999998 677788888
Q ss_pred EEEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC----CCCccEEEEcCCCCccccCCC
Q 013521 160 TVAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST----TSRTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 160 ~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~----~~~~~~v~i~~p~NPtG~~~~ 232 (441)
.|++..+.+.+ +...+...| .+++.++.+.+...+.+ +++ .++++++++++++||||...+
T Consensus 76 ~vi~~~~~~~~~~~~~~a~~~g------------~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~ 143 (355)
T TIGR03301 76 KLLVLINGAYGERLAKICEYLG------------IPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNP 143 (355)
T ss_pred eEEEECCCchhhHHHHHHHHcC------------CceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhH
Confidence 87776665544 345566677 57888887643332222 221 245677888899999999988
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCc--
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY-- 310 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~-- 310 (441)
+++|+++|++|++++|+|++++.. ..+.++... +..++++|++|+++ ++.++||++++++.+..-..
T Consensus 144 ---~~~i~~l~~~~~~~livD~~~s~g---~~~~~~~~~----~~d~~~~s~~K~l~-~~~G~g~~~~~~~~~~~~~~~~ 212 (355)
T TIGR03301 144 ---LEAIAKVARSHGAVLIVDAMSSFG---AIPIDIEEL----DVDALIASANKCLE-GVPGFGFVIARRDLLEASAGNA 212 (355)
T ss_pred ---HHHHHHHHHHcCCEEEEEeccccC---Ccccchhhc----CccEEEecCCcccc-cCCceeEEEECHHHHHHhhCCC
Confidence 789999999999999999977632 113333222 34588999999873 33347999999887421000
Q ss_pred -----hhHHHHHHHH--hhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC---Cce
Q 013521 311 -----PVIKDFNRIV--CTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSLGLKVNGGK---NAP 379 (441)
Q Consensus 311 -----~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~ 379 (441)
.....+.... .....+++.+.+.++.+.+...... ++++.+++++++++++.+.|+++|+++..++ ++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~ 292 (355)
T TIGR03301 213 RSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPI 292 (355)
T ss_pred CCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCc
Confidence 0000000000 1112345666655554444311111 2467778889999999999998888754332 345
Q ss_pred EEEEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 380 YVWVQFPG---SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 380 ~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
++|+.++. .+..++.+.+. ++||.+.||..+. .++|||++. .++++++++++.|++++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~l~-~~gi~i~~~~~~~---~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 293 IVSFLYPDDPDFDFDDFYQELK-ERGFVIYPGKLTL---ADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred EEEEECCCCCcchHHHHHHHHH-HCCEEEECCcccc---ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 68888874 23345556655 5599999987543 268999963 48999999999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=208.04 Aligned_cols=305 Identities=16% Similarity=0.283 Sum_probs=203.0
Q ss_pred CCCC-CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH--H-HHhc--CC----------CCEEEEeCCCchh
Q 013521 107 YKGY-GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR--L-QMLL--GS----------NVTVAVQDPSFPA 170 (441)
Q Consensus 107 ~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~--l-~~l~--~~----------gd~Vlv~~p~y~~ 170 (441)
.-+| +...|++++|+-+|+.+ ++++++|++..+++-.+.. + ..++ -+ .-+.+++.|+|..
T Consensus 61 ~RNY~G~l~Gipe~r~l~a~ll----gv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDR 136 (425)
T PF12897_consen 61 CRNYPGGLDGIPEARELFAELL----GVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDR 136 (425)
T ss_dssp TTSS-S-SS--HHHHHHHHHHH----TS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HH
T ss_pred ccCCCCccCChHHHHHHHHHHh----CCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchH
Confidence 3479 88889999999999997 9999999999888766542 3 2222 11 1268999999999
Q ss_pred hHhHHHHhccccccccccCccceeEEeecCCCCCccCCC-----CCCCCccEEEEcCC--CCccccCCCHHHHHHHHHH-
Q 013521 171 YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-----STTSRTDIIFFCSP--NNPTGHAATWQQLKKLVEF- 242 (441)
Q Consensus 171 ~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-----~~~~~~~~v~i~~p--~NPtG~~~~~~~~~~i~~~- 242 (441)
...+.+.+| ++.+.||++++ +.+.|. ...+.+|.|+ |.| +||||.++|.+..++++++
T Consensus 137 HFai~E~~G------------iemi~VpM~~d-GPDmD~Ve~LV~~D~svKGiW-cVP~ySNPtG~tySde~vrrlA~m~ 202 (425)
T PF12897_consen 137 HFAITEHFG------------IEMIPVPMTED-GPDMDMVEELVAEDPSVKGIW-CVPKYSNPTGITYSDEVVRRLAAMK 202 (425)
T ss_dssp HHHHHHHCT-------------EEEEEEEETT-EE-HHHHHHHTHTSTTEEEEE-E-SSS-TTT-----HHHHHHHHHS-
T ss_pred HHHHHHhhC------------cEEEecCCCCC-CCCHHHHHHHHhcCCccceEE-eCCCccCCCCccCCHHHHHHHhcCC
Confidence 999999999 79999999876 433331 1247889988 556 9999999999999999988
Q ss_pred HHHcCcEEEEccccccccc-CCCC----Ccccc---cCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHH
Q 013521 243 AKANGSIIVYDSAYAAYIT-DPSP----RSIYE---IPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIK 314 (441)
Q Consensus 243 a~~~~~~ii~De~~~~~~~-~~~~----~~~~~---~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~ 314 (441)
+...++.|+.|++|.-... ++.+ ..+.. -.+.+++++...|.||+. +||-+++++.++++. ++
T Consensus 203 ~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~aaS~~N--------l~ 273 (425)
T PF12897_consen 203 TAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFFAASEAN--------LA 273 (425)
T ss_dssp -SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEEE-HHH--------HH
T ss_pred cCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeeeecCHHH--------HH
Confidence 3357999999999996555 2222 12332 246789999999999988 699999999999988 46
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHhcCCC--cH-HHHHHHHHHHHHHHHHHHHHHHhC-C-----CeeeCCCCceEEEEEc
Q 013521 315 DFNRIVCTCFNGASNIVQAGGLACLSPD--GF-QALRTVIDYYKENAKIIVDAFQSL-G-----LKVNGGKNAPYVWVQF 385 (441)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~-~~~~~~~~~~~~~~~~l~~~L~~~-g-----~~~~~~~~~~~~~~~~ 385 (441)
.+.........+..-+.|..-..++.+. +. .|+++.++.++-+.+.+.+.|++. | .++..|.+|+|+++++
T Consensus 274 ~~~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~ 353 (425)
T PF12897_consen 274 WIKKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDV 353 (425)
T ss_dssp HHHHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEE
T ss_pred HHHHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEec
Confidence 6776667677778999999999999864 33 688898999998888888887754 3 4788889999999999
Q ss_pred CCCChHHHHHHHHHhcCeEEeC-CCCcCC---CCCCeEEEEe-ecCHHHHHHHHHHHHh
Q 013521 386 PGSSSWDVFAEILEKTHILTIP-GSGFGP---GGNEHIRVSA-FGHREYISEACRRLKN 439 (441)
Q Consensus 386 ~~~~~~~~~~~ll~~~gi~v~p-g~~f~~---~~~~~iRls~-~~~~~~~~~~l~~l~~ 439 (441)
..... ..+.++.++.||.+.| |..|-. +.+..|||+- +.+.++++.+++.+.-
T Consensus 354 ~~G~A-krvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~ 411 (425)
T PF12897_consen 354 LDGTA-KRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFAT 411 (425)
T ss_dssp STT-H-HHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHH
T ss_pred CCChH-HHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 86454 4456667778999999 777731 2367899995 5578999999998864
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=220.85 Aligned_cols=326 Identities=13% Similarity=0.076 Sum_probs=222.4
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHHHHHH-HHHhcCCCCE
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG-DEIFISDGAQSDISR-LQMLLGSNVT 160 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~al~~-l~~l~~~gd~ 160 (441)
+...++.+.+++.+.. . +| ...+..++++.+++.+.+.++.++ +.+++++|+++++.. +..++++||+
T Consensus 17 P~~~~~~V~~a~~~~~--------~-~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~ 86 (401)
T PLN02409 17 PVNIPERVLRAMNRPN--------E-DH-RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDK 86 (401)
T ss_pred CCCCCHHHHHHhcCCC--------C-CC-CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCE
Confidence 3456788877775522 1 22 244678888888888877677765 478899999999987 6778899999
Q ss_pred EEEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C----CCccEEEEcCCCCccccCC
Q 013521 161 VAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T----SRTDIIFFCSPNNPTGHAA 231 (441)
Q Consensus 161 Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~----~~~~~v~i~~p~NPtG~~~ 231 (441)
|++.+++|++.. ..++..| .+++.++.+.+..+.++ +++ . +++++|++++++||||.++
T Consensus 87 Vlv~~~~~~~~~~~~~~~~~g------------~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~ 154 (401)
T PLN02409 87 VVSFRIGQFSLLWIDQMQRLN------------FDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTN 154 (401)
T ss_pred EEEeCCCchhHHHHHHHHHcC------------CceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccC
Confidence 999999997763 4555566 58888888754333222 211 1 3789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCc-
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY- 310 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~- 310 (441)
|.+++.++++ |+++|+++|+|++++. ...+..+.. .+.++++.|.+|+++. +.++||++++++.+..-..
T Consensus 155 ~~~~i~~l~~-~~~~g~~~vvD~v~s~---g~~~id~~~----~~~D~~~~s~~K~l~~-P~G~G~l~~~~~~~~~~~~~ 225 (401)
T PLN02409 155 DLAGVRKLLD-CAQHPALLLVDGVSSI---GALDFRMDE----WGVDVALTGSQKALSL-PTGLGIVCASPKALEASKTA 225 (401)
T ss_pred CHHHHHHHHh-hhccCcEEEEEccccc---CCccccccc----cCccEEEEcCccccCc-CCCcceeEECHHHHHHHhcC
Confidence 9666666655 9999999999999872 111222211 2345888888999963 3479999999887421000
Q ss_pred ----hhHH--HHHHHHhh--h-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC----C
Q 013521 311 ----PVIK--DFNRIVCT--C-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK----N 377 (441)
Q Consensus 311 ----~~~~--~~~~~~~~--~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~ 377 (441)
.... ........ . ..+++...+.++.++++......++++++++++.++++.+.|++.|+++..+. .
T Consensus 226 ~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s 305 (401)
T PLN02409 226 KSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRS 305 (401)
T ss_pred CCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcc
Confidence 0000 00001001 1 22345555555555554211234688889999999999999998888876532 2
Q ss_pred ceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 378 APYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 378 ~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
...+|+.++ +.+..++...+++++||.+.+|.. ......|||+. +.+.+++..++.+|+++|
T Consensus 306 ~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~--~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l 370 (401)
T PLN02409 306 DTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLN--KVAGKVFRIGHLGNVNELQLLGALAGVEMVL 370 (401)
T ss_pred cceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCC--cccCCEEEEcCCCCCCHHHHHHHHHHHHHHH
Confidence 234678876 456667888888899999999863 33467899995 458899999999998753
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=221.26 Aligned_cols=321 Identities=17% Similarity=0.119 Sum_probs=211.8
Q ss_pred CCcHHHHHHHHHHHhhccCCCC--CCCCCC--CcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcHHHHHH-HHHhcC--
Q 013521 85 PIPDIITSAMAEHAFALSTVKG--YKGYGA--EQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQSDISR-LQMLLG-- 156 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~--~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~~al~~-l~~l~~-- 156 (441)
++|+.+.+++.+.+......+. ..++.+ .....++|+.+++++ +.+ +++|++|+|+++++.+ +..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~g~t~a~~~~~~~l~~~~ 85 (373)
T cd06453 10 QKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFI----NAPSPDEIIFTRNTTEAINLVAYGLGRAN 85 (373)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHh----CCCCCCeEEEeCCHHHHHHHHHHHhhhcC
Confidence 4668899999988865432111 111111 234567888888886 666 7899999999999987 566666
Q ss_pred -CCCEEEEeCCCchhhHhH----HHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccc
Q 013521 157 -SNVTVAVQDPSFPAYIDT----SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 157 -~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG 228 (441)
+||+|++++++|++.... ++..| .+++.++.+.++..+++ +++ .+++++|++++|+||||
T Consensus 86 ~~g~~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG 153 (373)
T cd06453 86 KPGDEIVTSVMEHHSNIVPWQQLAERTG------------AKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLG 153 (373)
T ss_pred CCCCEEEECcchhHHHHHHHHHHHhhcC------------cEEEEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccC
Confidence 899999999999885333 33445 58888888744322221 221 35889999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccC
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN 308 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~ 308 (441)
.+++ +++|+++|++||++|++|++|+.... +..+... +..+++.|++|.++ + .++||++++++++..-
T Consensus 154 ~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~---~~~~~~~----~~d~~~~s~~K~~~-~-~g~g~~~~~~~~~~~~ 221 (373)
T cd06453 154 TINP---VKEIGEIAHEAGVPVLVDGAQSAGHM---PVDVQDL----GCDFLAFSGHKMLG-P-TGIGVLYGKEELLEEM 221 (373)
T ss_pred CcCC---HHHHHHHHHHcCCEEEEEhhhhcCce---eeecccc----CCCEEEeccccccC-C-CCcEEEEEchHHhhcC
Confidence 9999 77899999999999999999873221 2222221 23477889999997 4 6799999988774221
Q ss_pred CchhH-----HH----HHHHH----hhhcCCCcHHHH---HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 013521 309 GYPVI-----KD----FNRIV----CTCFNGASNIVQ---AGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK 371 (441)
Q Consensus 309 ~~~~~-----~~----~~~~~----~~~~~~~~~~~~---~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 371 (441)
..... .. ..... .....+++.... .+++..+.+.+ ++.++++.++.++++.+.|+++ +++
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g---~~~~~~~~~~~~~~l~~~l~~~~~~~ 298 (373)
T cd06453 222 PPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIG---MEAIAAHEHELTAYALERLSEIPGVR 298 (373)
T ss_pred CCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 10000 00 00000 000112333333 33333343333 3677788888899999999887 677
Q ss_pred eeCC--CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcC------CCCCCeEEEEee--cCHHHHHHHHHHH
Q 013521 372 VNGG--KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFG------PGGNEHIRVSAF--GHREYISEACRRL 437 (441)
Q Consensus 372 ~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~------~~~~~~iRls~~--~~~~~~~~~l~~l 437 (441)
+..+ ..+.++++.+++.+..++.+.+.+ +||.+.+|..+. ....++||+++. +++++++++++.|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 299 VYGDAEDRAGVVSFNLEGIHPHDVATILDQ-YGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred EeCCccccCCeEEEEECCcCHHHHHHHHHH-CCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 7532 235678888876556666666654 699999887543 123579999974 5899999998864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=220.79 Aligned_cols=334 Identities=13% Similarity=0.156 Sum_probs=219.4
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC-----CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA-----EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ- 145 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~- 145 (441)
..+++++.+.++.+.|+.+.++..++ . . ..+|.+ ..|..++++++++++.+.++.+.++++++++++
T Consensus 20 ~~~~~l~~g~~~~~~p~~~~~~~~~~-~-----~-~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~ 92 (398)
T cd00613 20 QSMSFLGSGTYKHNPPAVIKRNILEN-E-----F-YTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATA 92 (398)
T ss_pred cCcccccccccCCcCcHHHHHHhccc-c-----C-cccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHH
Confidence 45799999999998888877767665 1 1 123444 679999999999999887787777887777555
Q ss_pred HHHHHH-HHhcCC--CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEE
Q 013521 146 SDISRL-QMLLGS--NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIF 219 (441)
Q Consensus 146 ~al~~l-~~l~~~--gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~ 219 (441)
++...+ ..++.+ ||+|++++|.|+.+...+..+|.+.. .+++.++.+++...+++ +++ .+++++|+
T Consensus 93 ~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g--------~~~~~v~~~~~~~~d~~~l~~~i~~~t~~vi 164 (398)
T cd00613 93 AAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLG--------IEVVEVPSDEGGTVDLEALKEEVSEEVAALM 164 (398)
T ss_pred HHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCC--------cEEEEeccCCCCCcCHHHHHHhcCCCeEEEE
Confidence 444443 444565 99999999999999888887773221 36777777543222111 221 36789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc----ccee
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT----GVRL 295 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~----G~r~ 295 (441)
+++|+ |||.+. +.+++|.++|++||+++|+|+++..... +.... ..+.++++.|+||++ +| |+|+
T Consensus 165 v~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~---~~~~~----~~~~d~~~~s~~K~~-~p~g~Ggp~~ 233 (398)
T cd00613 165 VQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTG---LKPPG----EYGADIVVGNLQKTG-VPHGGGGPGA 233 (398)
T ss_pred EECCC-CCceec--chHHHHHHHHHhcCCEEEEEeccccccC---CCChH----HcCCCEEEeeccccC-CCCCCCCCce
Confidence 98885 899994 3469999999999999999998753221 11111 123459999999998 46 7999
Q ss_pred EEEEeeccccccCCchhH----------------H------HHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013521 296 GWTVVPEELRYSNGYPVI----------------K------DFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDY 353 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~----------------~------~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 353 (441)
||++++++++........ . ++.........+.+...+.++..+.. .....+++++++
T Consensus 234 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~-~~~~g~~~~~~~ 312 (398)
T cd00613 234 GFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVY-LGPEGLKEIAER 312 (398)
T ss_pred eEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHH-hCHHHHHHHHHH
Confidence 999998876422100000 0 00000011111122333443333332 233456788899
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCceE--EEEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecC
Q 013521 354 YKENAKIIVDAFQSLGLKVNGGKNAPY--VWVQFPG---SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGH 426 (441)
Q Consensus 354 ~~~~~~~l~~~L~~~g~~~~~~~~~~~--~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~ 426 (441)
++++++++.+.|++++... .+.+..+ ++++++. .+..++...|+++ ||.+.+.. +...+.||++. +++
T Consensus 313 ~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~-gi~~~~~~---~~~~~~lRis~~~~~t 387 (398)
T cd00613 313 AHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLYGIRAEDLAKALIDG-GFHAPTMY---LPVDGTLMIEPTETET 387 (398)
T ss_pred HHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcchHHHHHHHHhhhhc-Cccccccc---cCCCCeEEEEcCCCCC
Confidence 9999999999999875433 2223333 6777763 2355677776654 88764421 23457899995 669
Q ss_pred HHHHHHHHHHH
Q 013521 427 REYISEACRRL 437 (441)
Q Consensus 427 ~~~~~~~l~~l 437 (441)
+++++++++.|
T Consensus 388 ~edid~~~~~L 398 (398)
T cd00613 388 KEELDALLEAL 398 (398)
T ss_pred HHHHHHHHHhC
Confidence 99999998864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=222.35 Aligned_cols=339 Identities=14% Similarity=0.132 Sum_probs=214.7
Q ss_pred CCCCeEEeCCC--CCCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIG--DTTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g--~~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.+.++||+..| ...+. .++.+.+++.+.+... ..|....+..++...+++.+.+.++.+.++|++++|+++
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgse 107 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKL------THFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTE 107 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhC------cCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHH
Confidence 35678999876 33343 7889999999988642 133322234455555555554444667899999999999
Q ss_pred HHHH-HHHh--cCCCCEEEEeCCCchhhHhHHHHhcccc----ccccccCccceeEEeecCCCC----CccCCCC-----
Q 013521 147 DISR-LQML--LGSNVTVAVQDPSFPAYIDTSVIVGQAG----KFLKETGKYRNIVYMNCRPEN----NFFPDLS----- 210 (441)
Q Consensus 147 al~~-l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~----~~~~~~~~~~~v~~v~~~~~~----~~~~~~~----- 210 (441)
|+.. +..+ ..+++.|++.+++|++........+... .+.... .++..+|.+... .+..+++
T Consensus 108 a~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 184 (413)
T cd00610 108 AVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLL---PGVLHVPYPYRYRPPAELADDLEALEEA 184 (413)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCC---CCcEEeCCCccccchhhHHHHHHHHHHH
Confidence 9987 4333 3678999999999999755554433210 000000 235556554210 1111211
Q ss_pred --CC-CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC
Q 013521 211 --TT-SRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285 (441)
Q Consensus 211 --~~-~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 285 (441)
.. .++++ ++++| +|++|.++ +.+.+++|.++|++||+++|+||+|..+...+.........-.++ +.|+|
T Consensus 185 l~~~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d----~~t~s 259 (413)
T cd00610 185 LEEHPEEVAA-VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPD----IVTLG 259 (413)
T ss_pred HhcCCCCEEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCC----eEEEc
Confidence 11 24445 44566 77779877 677799999999999999999999997643332211111211122 45899
Q ss_pred cccCCccceeEEEEeeccccccCCchhHHHH--HHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 013521 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDF--NRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVD 363 (441)
Q Consensus 286 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 363 (441)
|.++ .|+|+||++++++++ +.+ .........+.+++.+.++.+.++... . ..+.++++++.+.+.+
T Consensus 260 K~l~-~g~~~g~~~~~~~~~--------~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~-~--~~~~~~~~~~~~~l~~ 327 (413)
T cd00610 260 KGLG-GGLPLGAVLGREEIM--------DAFPAGPGLHGGTFGGNPLACAAALAVLEVLE-E--EGLLENAAELGEYLRE 327 (413)
T ss_pred cccc-CccccEEEEEcHHHH--------HhhccCCCCCCCCCCcCHHHHHHHHHHHHHHH-h--ccHHHHHHHHHHHHHH
Confidence 9998 689999999987763 332 222222344567788887777764211 1 3455666677777777
Q ss_pred HHHhC----CCeeeCCCCceEEEEEcCCC---------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHH
Q 013521 364 AFQSL----GLKVNGGKNAPYVWVQFPGS---------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHRE 428 (441)
Q Consensus 364 ~L~~~----g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~ 428 (441)
.|++. ++.......|.++|+.++.. ....+.+.+++ +||.+.|+. .+.+|+++ ..+++
T Consensus 328 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~v~~~~------~~~lR~~~~~~~t~~ 400 (413)
T cd00610 328 RLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALE-RGLLLRPSG------GNVIRLLPPLIITEE 400 (413)
T ss_pred HHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHH-CCeEEeecC------CCEEEEECCCcCCHH
Confidence 77654 22222234678889888632 23455666555 599999974 46899985 45899
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
++++++++|.+++
T Consensus 401 ~i~~~~~~l~~~l 413 (413)
T cd00610 401 EIDEGLDALDEAL 413 (413)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=215.60 Aligned_cols=295 Identities=11% Similarity=0.080 Sum_probs=199.0
Q ss_pred cHHHHHHHHHHHhhhCCCCCC--cEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhh--HhHHHHhccccccccccCc
Q 013521 116 NMALRTAIADKFYKDMGIEGD--EIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGK 190 (441)
Q Consensus 116 ~~~lr~~ia~~l~~~~~~~~~--~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~ 190 (441)
..++|+.++++ ++++++ +|++|+|++++++. +..++.+||.+++..+++++. ...++..|
T Consensus 37 ~~~~r~~la~l----~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g----------- 101 (363)
T TIGR02326 37 VEQIRQQLLAL----ATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLG----------- 101 (363)
T ss_pred HHHHHHHHHHH----hCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcC-----------
Confidence 34456666665 477654 79999999999998 577888888888877766554 35556667
Q ss_pred cceeEEeecCCCCCccCC-CC----CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC
Q 013521 191 YRNIVYMNCRPENNFFPD-LS----TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP 265 (441)
Q Consensus 191 ~~~v~~v~~~~~~~~~~~-~~----~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~ 265 (441)
.+++.++.++++..+++ ++ ..++++++.+++++||||..+| +++|+++|++||+++|+|++++ + +..+
T Consensus 102 -~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~-~--g~~~ 174 (363)
T TIGR02326 102 -IPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSS-F--GGIP 174 (363)
T ss_pred -CceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccc-c--cCcc
Confidence 58888888754433322 21 1245677888899999999999 7899999999999999999876 2 2224
Q ss_pred CcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCc-------hhHHHHHHHH---hhhcCCCcHHHHHHH
Q 013521 266 RSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY-------PVIKDFNRIV---CTCFNGASNIVQAGG 335 (441)
Q Consensus 266 ~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~-------~~~~~~~~~~---~~~~~~~~~~~~~a~ 335 (441)
.++..+ +..++++|++|+++ ++.++||++++++.+..... .....+.... .....+.+.+.+.+.
T Consensus 175 ~~~~~~----~~D~~~~s~~K~l~-~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al 249 (363)
T TIGR02326 175 IDIAEL----HIDYLISSANKCIQ-GVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAF 249 (363)
T ss_pred cchhhc----CccEEEecCccccc-cCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHH
Confidence 444333 23488999999884 44458999998876421000 0000011110 001123566666665
Q ss_pred HHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhCCCeeeCC---CCceEEEEEcCC---CChHHHHHHHHHhcCeEEeCC
Q 013521 336 LACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSLGLKVNGG---KNAPYVWVQFPG---SSSWDVFAEILEKTHILTIPG 408 (441)
Q Consensus 336 ~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg 408 (441)
.+++...... .+++.+++++++++++.+.|+++|+....+ ..+..+|+.++. .+..++.+.+. ++||.+.||
T Consensus 250 ~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~-~~gi~v~~g 328 (363)
T TIGR02326 250 AQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLK-EQGFVIYPG 328 (363)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHH-HCCEEEECC
Confidence 5555421111 246678999999999999999888877543 234457888874 34455666654 559999999
Q ss_pred CCcCCCCCCeEEEEe-e-cCHHHHHHHHHHHHhhC
Q 013521 409 SGFGPGGNEHIRVSA-F-GHREYISEACRRLKNFL 441 (441)
Q Consensus 409 ~~f~~~~~~~iRls~-~-~~~~~~~~~l~~l~~~l 441 (441)
..+ ..++||+++ + .+.+++++++++|++++
T Consensus 329 ~~~---~~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 329 KVS---QVDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred cCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 765 247899995 3 48999999999998864
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-25 Score=217.22 Aligned_cols=335 Identities=16% Similarity=0.169 Sum_probs=220.0
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCC--CCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGY--KGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
.++++|+.+++ ++..+|.+.+++.+.+.+++..... ..++...-..+|.+.+|+++ +. +..+++++|++...
T Consensus 45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~----g~-~~~~~~~SG~~An~ 119 (406)
T PRK13393 45 REVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLH----GK-EAALLFTSGYVSNW 119 (406)
T ss_pred ccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHh----CC-CcEEEeCCcHHHHH
Confidence 46899999985 5667899999999999876531111 11222224567788888775 53 45677777765333
Q ss_pred HHHHHhcC--CCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCC
Q 013521 149 SRLQMLLG--SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPN 224 (441)
Q Consensus 149 ~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~ 224 (441)
.++..+.. +||.|++....|......+...| .++..++..+...+...+.. .+++++|++++++
T Consensus 120 ~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~ 187 (406)
T PRK13393 120 AALSTLGSRLPGCVILSDELNHASMIEGIRHSR------------AEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVY 187 (406)
T ss_pred HHHHHhhcCCCCCEEEEccchhHHHHHHHHHcC------------CeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCC
Confidence 33554544 78888887778877777776666 35555554221111111111 1357888888999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC-CcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
||+|.+.+ +++|.++|++||+++|+||+|+...++.....+....+ .++.+|.++||||.+|++| ||++++++
T Consensus 188 ~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~~~~~~~ 261 (406)
T PRK13393 188 SMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG---GYITGSAA 261 (406)
T ss_pred CCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC---ceeeCCHH
Confidence 99999999 88899999999999999999984333322222222211 1223588899999999888 99998877
Q ss_pred ccccCCchhHHHHHHHHhh--hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEE
Q 013521 304 LRYSNGYPVIKDFNRIVCT--CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 381 (441)
+ .+.+...... ...+.+++.+.++.++++.... . ...+++++++++++.+.|++.|+++.+ ..++++
T Consensus 262 ~--------~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~-~-~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~i~ 330 (406)
T PRK13393 262 L--------CDFIRSFASGFIFTTSLPPAVAAGALASVRHLKA-S-SAERERHQDRVARLRARLDKAGIPHLP-NPSHIV 330 (406)
T ss_pred H--------HHHHHHhCcCceecCccCHHHHHHHHHHHHHHhh-C-HHHHHHHHHHHHHHHHHHHHcCCCcCC-CCCCeE
Confidence 6 3444433221 1233556667777777752111 1 223466788899999999888877654 356666
Q ss_pred EEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 382 WVQFPG-SSSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 382 ~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+.++. ....++.+.|++++||.+.++.... +.+.++|||++ ..+++++++++++|+++
T Consensus 331 ~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~ 393 (406)
T PRK13393 331 PVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEI 393 (406)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 666642 1235677777766799999875432 33457899996 46899999999999875
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-25 Score=216.84 Aligned_cols=333 Identities=17% Similarity=0.196 Sum_probs=209.2
Q ss_pred CCCeEEeCCCC--CC-CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TT-QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~-~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|. .. -..+|.+.+++.+.+.+..... ..| ..+...++.+.+++. . ..+++++++|+++|
T Consensus 30 G~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~--~~~-~~~~~~~la~~l~~~----~--~~~~v~~~~sGseA 100 (389)
T PRK01278 30 GERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVS--NLY-RIPEQERLAERLVEN----S--FADKVFFTNSGAEA 100 (389)
T ss_pred CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccc--ccc-CChHHHHHHHHHHhh----C--CCCEEEEcCCcHHH
Confidence 45688887653 11 1367899999999887532111 112 122233444444443 2 34799999999999
Q ss_pred HHH-HHHh----cCCCC----EEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCCCccCCCCC--CCCc
Q 013521 148 ISR-LQML----LGSNV----TVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPENNFFPDLST--TSRT 215 (441)
Q Consensus 148 l~~-l~~l----~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~ 215 (441)
+.. +... .++|| +|++.+++|+++...+...+....+.. .......+..++..+ ..++++ .+++
T Consensus 101 ~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~l~~~~ 176 (389)
T PRK01278 101 VECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGD----IEALKAAITPNT 176 (389)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCC----HHHHHHhhCCCe
Confidence 986 4332 35666 899999999998766655542211000 000000111122110 001111 2478
Q ss_pred cEEEEcCCCCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce
Q 013521 216 DIIFFCSPNNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 216 ~~v~i~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
++|+++.++||+| .++|.+.+++|.++|++||+++|+||+|..+...+.........-.+| +.||||.++ +|+|
T Consensus 177 ~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd----i~t~sK~l~-~G~~ 251 (389)
T PRK01278 177 AAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPD----IMAVAKGIG-GGFP 251 (389)
T ss_pred EEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCC----EEEEehhcc-CCcc
Confidence 8888876688998 789999999999999999999999999998755443222111111233 458999998 9999
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC---CcH-HHHHHHHHHHHHHHHHHHHHHHhCC-
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP---DGF-QALRTVIDYYKENAKIIVDAFQSLG- 369 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~-~~~~~~~~~~~~~~~~l~~~L~~~g- 369 (441)
+||+++++++. +.+.........+.+++.|.++.+.++. ... ++++++.+.++++.+.+.+ ++.
T Consensus 252 ig~~~~~~~~~--------~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~---~~~~ 320 (389)
T PRK01278 252 LGACLATEEAA--------KGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVD---RFPD 320 (389)
T ss_pred eEEEEEcHHHH--------hccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh---hCCC
Confidence 99999998763 3333333334445788999988777752 111 3344444444444443322 221
Q ss_pred C-eeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 370 L-KVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 370 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
+ .... ..|.++|++++. +..++..+++++ ||.+.|+. .+++||+. ..+++++++++++|++++
T Consensus 321 ~~~~v~-g~G~~~~i~~~~-~~~~~~~~l~~~-GV~~~p~~------~~~lR~~p~~~~~~~~i~~~l~~l~~~l 386 (389)
T PRK01278 321 VIEEVR-GKGLLLGLKCVV-PNRDLVQALRDE-GLLTVGAG------DNVVRLLPPLIITEEEIDEALERLERAA 386 (389)
T ss_pred ceeeEe-cccEEEEEEEec-CHHHHHHHHHHC-CeEEeecC------CCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 2 2222 367888888753 567788888876 99999863 57899984 468999999999998764
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-25 Score=213.68 Aligned_cols=331 Identities=15% Similarity=0.133 Sum_probs=221.0
Q ss_pred EeCCCCC-CCCCcHHHHHHHHHHHhhccCCCC--CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHH
Q 013521 76 RLGIGDT-TQPIPDIITSAMAEHAFALSTVKG--YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQ 152 (441)
Q Consensus 76 ~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~ 152 (441)
||+.+++ .+...|.+.++..+++++++.... ...|+...+..+|++++|+++ +.+ +.+++++|.++++.++.
T Consensus 2 ~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~----g~e-~al~~~sG~~a~~~~i~ 76 (392)
T PLN03227 2 NFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFL----GTE-SAILYSDGASTTSSTVA 76 (392)
T ss_pred CCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHh----CCC-cEEEecCcHHHHHHHHH
Confidence 5566654 456778999999999988653221 224777778999999999997 544 78999999999998888
Q ss_pred HhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC---CC---------CCCCccEEEE
Q 013521 153 MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD---LS---------TTSRTDIIFF 220 (441)
Q Consensus 153 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~---~~---------~~~~~~~v~i 220 (441)
.++++||.|+++++.|+++...+...+ .+++.++..+.+++... +. ..+++++|++
T Consensus 77 ~l~~~GD~Vl~~~~~h~s~~~~~~l~~------------~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~ 144 (392)
T PLN03227 77 AFAKRGDLLVVDRGVNEALLVGVSLSR------------ANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVV 144 (392)
T ss_pred HhCCCCCEEEEeccccHHHHHHHHHcC------------CeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEE
Confidence 899999999999999999887776655 36666665432221111 11 1136788888
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc-CCCCCccccc---CCCcceeEEEecCCcccCCccceeE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT-DPSPRSIYEI---PGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~-~~~~~~~~~~---~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
.+++||+|.+.+ +++|.++|++||+++|+||+|. +.. +.......+. ....+.+|++.|+||.+|.. .|
T Consensus 145 E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~-~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~---gg 217 (392)
T PLN03227 145 EGLYKNTGTLAP---LKELVALKEEFHYRLILDESFS-FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSV---GG 217 (392)
T ss_pred cCCcCCCCcccC---HHHHHHHHHHcCCEEEEECccc-ccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhcc---Cc
Confidence 889999999999 7889999999999999999998 332 2211122221 11124468899999987644 48
Q ss_pred EEEeeccccccCCchhHHHHHHHHhhhcCCC--cHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee--
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNGA--SNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV-- 372 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-- 372 (441)
+++++++++ +.+.........+. +++.+.++.+.+..... .+.++++++++.+++.+.|++.++..
T Consensus 218 ~v~~~~~~~--------~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~ 287 (392)
T PLN03227 218 MTVGSEEVV--------DHQRLSGSGYCFSASAPPFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNSSHPYAL 287 (392)
T ss_pred EEecCHHHH--------HHHHHhCcCccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 988887763 33332222222222 35566666655542111 25677888999999999998643321
Q ss_pred --------eCCCCceEEEEEcCCCC----------hHHHHHHHHHhcCeEEeCCCC-----cCCCCCCeEEEEe--ecCH
Q 013521 373 --------NGGKNAPYVWVQFPGSS----------SWDVFAEILEKTHILTIPGSG-----FGPGGNEHIRVSA--FGHR 427 (441)
Q Consensus 373 --------~~~~~~~~~~~~~~~~~----------~~~~~~~ll~~~gi~v~pg~~-----f~~~~~~~iRls~--~~~~ 427 (441)
.....++.+.+.+.+.. ..++.+.+++ +|+.+.+... +....+..||+++ ..++
T Consensus 288 ~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~ 366 (392)
T PLN03227 288 KLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLS-EGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTR 366 (392)
T ss_pred ccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHH-CCCEEEecccccCCcCCCCCCceEEEEecCCCCH
Confidence 11234667777775311 1255555555 5999875211 1112256799997 4489
Q ss_pred HHHHHHHHHHHhhC
Q 013521 428 EYISEACRRLKNFL 441 (441)
Q Consensus 428 ~~~~~~l~~l~~~l 441 (441)
++++++++.|++++
T Consensus 367 eei~~~~~~l~~~~ 380 (392)
T PLN03227 367 EDIDKLLTVLGEAV 380 (392)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=215.34 Aligned_cols=320 Identities=14% Similarity=0.115 Sum_probs=203.9
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC--CcEEEcCCcHHHHHH-HHHhcCCCC
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG--DEIFISDGAQSDISR-LQMLLGSNV 159 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~--~~I~~t~G~~~al~~-l~~l~~~gd 159 (441)
+.++++.+.+++.+... .....|. .-..++|+.+++.+ +.++ +.|++|+|+++++.. +..++.+||
T Consensus 13 P~~~~~~~~~a~~~~~~-----~~~~~~~--~~~~~~~~~l~~l~----~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~ 81 (368)
T PRK13479 13 PLTTSRTVREAMLRDWG-----SWDDDFN--ALTASVRAKLVAIA----TGEEGYTCVPLQGSGTFSVEAAIGSLVPRDG 81 (368)
T ss_pred CCCCCHHHHHHhCCCCC-----CCChHHH--HHHHHHHHHHHHHh----CCCCCceEEEEcCCcHHHHHHHHHhccCCCC
Confidence 34566777766655321 1111121 24566777777765 6654 568899999999997 678889999
Q ss_pred EEEEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC----CCCccEEEEcCCCCccccCCC
Q 013521 160 TVAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST----TSRTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 160 ~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~----~~~~~~v~i~~p~NPtG~~~~ 232 (441)
.|+++.++|.+.. ..++..| .+++.++.+.+..++++ +++ .++++++++++|+||||...|
T Consensus 82 ~vlv~~~~~~~~~~~~~~~~~g------------~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~ 149 (368)
T PRK13479 82 KVLVPDNGAYGARIAQIAEYLG------------IAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNP 149 (368)
T ss_pred eEEEEeCCchHHHHHHHHHHcC------------CcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC
Confidence 9999988887753 5666667 58888888654333222 221 245678999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCccc-CCccceeEEEEeeccccccCCch
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFA-GFTGVRLGWTVVPEELRYSNGYP 311 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-~~~G~r~G~l~~~~~~~~~~~~~ 311 (441)
+++|.++|+++|+++|+|+++. +. ..+.++... +..+++.|++|.+ |.+| +||++++++.+..-...
T Consensus 150 ---~~~i~~l~~~~~~~livDa~~~-~g--~~~~~~~~~----~~d~~v~s~~K~l~g~~G--~G~l~~~~~~~~~~~~~ 217 (368)
T PRK13479 150 ---LDEIAAVAKRHGKRLIVDAMSS-FG--AIPIDIAEL----GIDALISSANKCIEGVPG--FGFVIARRSELEACKGN 217 (368)
T ss_pred ---HHHHHHHHHHcCCEEEEEcccc-cC--Ccccccccc----CceEEEecCccccccCCC--ceEEEECHHHHHHhhcC
Confidence 7889999999999999997654 32 223333332 2348889999976 5566 79999998774210000
Q ss_pred ----hHHHHHHHH-----hhhcCCCcHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCC--c-
Q 013521 312 ----VIKDFNRIV-----CTCFNGASNIVQAGGLACLSPDG-FQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKN--A- 378 (441)
Q Consensus 312 ----~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~--~- 378 (441)
..+...... .....+++.+.+.++.+++.... ..++++.+++++++++.+.+.|+++|+++..++. .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 297 (368)
T PRK13479 218 SRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSP 297 (368)
T ss_pred CCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCc
Confidence 000000000 01112344444433333333110 1124677789999999999999998887653321 1
Q ss_pred eEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 379 PYVWVQFPG---SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 379 ~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
..+.+.++. .+..++.+.+.++ ||.+.+|..+ ..+++|++. +.++++++++++.|++++
T Consensus 298 ~~~~~~~~~~~~~~~~~l~~~L~~~-gi~v~~g~~~---~~~~iRis~~~~~t~edi~~~l~~L~~~l 361 (368)
T PRK13479 298 IIVTFHAPADPAYDFKEFYERLKEQ-GFVIYPGKLT---QVDTFRIGCIGDVDAADIRRLVAAIAEAL 361 (368)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHC-CEEEecCCCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 223334432 3456677776655 9999998643 246899985 348999999999998753
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=210.50 Aligned_cols=324 Identities=15% Similarity=0.115 Sum_probs=215.3
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCC---CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKG---YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
.+.|+|+.-.-..|+++.+.+++.+........+. ...+.......++|+.+|+++ +. +++++|+|+++++
T Consensus 18 ~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~----g~--~~~~~~~g~t~a~ 91 (387)
T PRK09331 18 EEFINLDPIQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL----GM--DEARVTHGAREGK 91 (387)
T ss_pred ccccccChhhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh----CC--CcEEEeCCHHHHH
Confidence 35777775555557889999999998855432111 223333456889999999996 55 4688999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------------CCCc
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------------TSRT 215 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------------~~~~ 215 (441)
.+ +..++++||+|+++.++|.+....+...| .+++.++.+.+.++..+.+. .+++
T Consensus 92 ~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 159 (387)
T PRK09331 92 FAVMHSLCKKGDYVVLDGLAHYTSYVAAERAG------------LNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPP 159 (387)
T ss_pred HHHHHHhcCCCCEEEECCCchHHHHHHHHHcC------------CEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCC
Confidence 87 67788999999999999998887777777 58888888311122233211 1378
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
++|++++|+||||...+ +++|+++|++||+++|+|++|+.... |.+...+ +..+++.|++|+++ ++.|+
T Consensus 160 ~lV~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~g~~---~~~~~~~----g~D~~~~s~~K~l~-~~~~~ 228 (387)
T PRK09331 160 ALALLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTVGRM---PVDGKKL----GADFIVGSGHKSMA-ASAPS 228 (387)
T ss_pred EEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCcccCCc---CCCHHHc----CCCEEEeeCccccc-CCCCE
Confidence 99999999999999888 88999999999999999999983211 2232222 33589999999997 66799
Q ss_pred EEEEeeccccccCCchhHHHHHHHHh-h-----h-cC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVC-T-----C-FN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~-~-----~-~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 367 (441)
||++++++++ +.+.+... . . .. +.+.....++.+.+. ...+.++ ..++..++.+++.+.|++
T Consensus 229 G~l~~~~~~i--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~-~~~~~~~-~~~~~~~~~~~l~~~L~~ 298 (387)
T PRK09331 229 GVLATTEEYA--------DKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFP-HVVERVK-RWDEEVKKARWFVDELEK 298 (387)
T ss_pred EEEEECHHHH--------hhcccccCCCcccceeeeceecCchHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 9999988764 22221110 0 0 00 111111121222222 0011222 344556677889999999
Q ss_pred C-CCeeeC--CCCceEEEEEcCCC---------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-ecCHHHHHHHH
Q 013521 368 L-GLKVNG--GKNAPYVWVQFPGS---------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-FGHREYISEAC 434 (441)
Q Consensus 368 ~-g~~~~~--~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~~~~~~~~~~l 434 (441)
+ |+++.. +...+++.++.+.. ...++.+.|. ++||...+. .....+|+.. +.+++++++++
T Consensus 299 l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gI~~~~~-----~~~~i~ri~~~g~t~~di~~l~ 372 (387)
T PRK09331 299 IEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELK-KRGIHGIKP-----GATKEFKLSTYGLTWEQVEYVA 372 (387)
T ss_pred CCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHH-HcCceEEcc-----CCceEEEEEeccCCHHHHHHHH
Confidence 8 998873 23455666665521 1133556654 569984332 2345677775 45899999999
Q ss_pred HHHHhh
Q 013521 435 RRLKNF 440 (441)
Q Consensus 435 ~~l~~~ 440 (441)
+.|+++
T Consensus 373 ~aL~~i 378 (387)
T PRK09331 373 DAFKEI 378 (387)
T ss_pred HHHHHH
Confidence 999875
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-25 Score=214.62 Aligned_cols=223 Identities=13% Similarity=0.156 Sum_probs=162.4
Q ss_pred CCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH----Hhcccc
Q 013521 108 KGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAG 182 (441)
Q Consensus 108 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~ 182 (441)
.+|+ ++-...|++.||++. + .+++++++|+++++.+ +..++++||.|+++.|+|+++...+. ..|
T Consensus 78 ~R~~-~Pt~~~Le~~lA~le----g--~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~G--- 147 (427)
T PRK07049 78 SRFN-HPNSEIVEDRLAVYE----G--AESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFG--- 147 (427)
T ss_pred cCCC-CcCHHHHHHHHHHHh----C--CCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcC---
Confidence 4564 456789999999985 3 4578888888889887 67889999999999999999877643 345
Q ss_pred ccccccCccceeEEeecCCC-CCccCCCC---CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH---cCcEEEEccc
Q 013521 183 KFLKETGKYRNIVYMNCRPE-NNFFPDLS---TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA---NGSIIVYDSA 255 (441)
Q Consensus 183 ~~~~~~~~~~~v~~v~~~~~-~~~~~~~~---~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~---~~~~ii~De~ 255 (441)
++++.++...+ ..+...+. ..+++++|++++|+||||.+++.+++.+|++.|+. +++++|+||+
T Consensus 148 ---------i~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDet 218 (427)
T PRK07049 148 ---------VGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNT 218 (427)
T ss_pred ---------cEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECC
Confidence 35555542111 01110011 12578999999999999999999988888888654 7899999999
Q ss_pred ccccccCCCCCcccccCCCcceeEEEecCCcccC-CccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHH
Q 013521 256 YAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG-FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAG 334 (441)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~-~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 334 (441)
|...... .++ .. +..+++.||||.+| .+|+|+||+++++++ .+.+...+.....+.+++.+.+
T Consensus 219 y~~~~~~---~pl-~~----g~divv~S~SK~~gG~~glr~G~vv~~~~l--------~~~l~~~~~~~g~~ls~~~a~l 282 (427)
T PRK07049 219 LLGPVFQ---KPL-EH----GADLSVYSLTKYVGGHSDLVAGAVLGRKAL--------IRQVRALRSAIGTQLDPHSCWM 282 (427)
T ss_pred ccccccC---Ccc-cc----CCCEEEEcCceeecCCCCcEEEEEECCHHH--------HHHHHHHHHhcCCCCCHHHHHH
Confidence 8754321 122 11 23588889999999 699999999988776 4566666665556688888887
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 013521 335 GLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GL 370 (441)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 370 (441)
+...++ .+..+.++.+++++.+.+.|+++ ++
T Consensus 283 ~~r~L~-----tl~~R~~~~~~~a~~la~~L~~~p~V 314 (427)
T PRK07049 283 LGRSLE-----TLVLRMERANRNARAVAEFLRDHPKV 314 (427)
T ss_pred HHcCCC-----hHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 766664 23555566689999999999987 44
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=212.28 Aligned_cols=326 Identities=17% Similarity=0.181 Sum_probs=208.0
Q ss_pred CCcHHHHHHHHHHHhhccCCCC-CCCCCC--CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhc---CC
Q 013521 85 PIPDIITSAMAEHAFALSTVKG-YKGYGA--EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLL---GS 157 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~-~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~---~~ 157 (441)
+.|+.+.+++.+.+......+. ...+.. ..-..++|+.+++++ ++++++|++|+|+++++++ +..++ .+
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~i~~t~~~t~a~~~al~~~~~~~~~ 85 (379)
T TIGR03402 10 RVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLL----GAEPDEIIFTSGGTESDNTAIKSALAAQPE 85 (379)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCcHHHHHHHHHHHHHHhcCC
Confidence 5678899999988764311011 111100 112456666777665 8889999999999999987 54443 46
Q ss_pred CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccccCCCHH
Q 013521 158 NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTGHAATWQ 234 (441)
Q Consensus 158 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~~~~~~ 234 (441)
||.|++...+|+++...+......| .+++.++.+.++..+.+ +++ .++++++++++++||||.++|
T Consensus 86 ~~~vv~~~~~~~s~~~~~~~~~~~G---------~~v~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~-- 154 (379)
T TIGR03402 86 KRHIITTAVEHPAVLSLCQHLEKQG---------YKVTYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFP-- 154 (379)
T ss_pred CCeEEEcccccHHHHHHHHHHHHcC---------CEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeeccc--
Confidence 7899999999988766555442222 48888888654322221 221 367899999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHH
Q 013521 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIK 314 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~ 314 (441)
+++|.++|++||+++++|++++. +..+..+... +..+++.|.+|.+|.+| +|+++++++.... +....
T Consensus 155 -~~~I~~l~~~~g~~vivD~~~~~---g~~~~~~~~~----~~D~~~~s~~K~~gp~G--~g~l~v~~~~~~~--p~~~g 222 (379)
T TIGR03402 155 -IEEIGEIAKERGALFHTDAVQAV---GKIPIDLKEM----NIDMLSLSGHKLHGPKG--VGALYIRKGTRFR--PLLRG 222 (379)
T ss_pred -HHHHHHHHHHcCCEEEEECcccc---cccccCcccC----CCCEEEEcHHHcCCCCc--eEEEEECCCCCCC--CcccC
Confidence 67899999999999999999973 1113333222 33488889999776555 8888877654211 00000
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCCCC---ceEEEEEcCCCC
Q 013521 315 DFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-L-GLKVNGGKN---APYVWVQFPGSS 389 (441)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~~~ 389 (441)
.... ......+.+.....+..++++ ...++++...++.++.++.+.+.|.+ + ++.+..+.. ...+.+.+++.+
T Consensus 223 ~~~~-~~~~~gt~~~~~~~~l~~al~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
T TIGR03402 223 GHQE-RGRRAGTENVPGIVGLGKAAE-LATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIE 300 (379)
T ss_pred CccC-CCcCCCCccHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCC
Confidence 0000 001122233334333344443 11245677778888899999999875 5 666654322 113333334445
Q ss_pred hHHHHHHHHHhcCeEEeCCCCcCCCC-----------------CCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 390 SWDVFAEILEKTHILTIPGSGFGPGG-----------------NEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 390 ~~~~~~~ll~~~gi~v~pg~~f~~~~-----------------~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
..++... |+++||.+.+|..|.... .+.||+|+ +++++|++++++.|+++
T Consensus 301 ~~~~~~~-l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~ 369 (379)
T TIGR03402 301 GEAILLL-LDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPI 369 (379)
T ss_pred HHHHHHh-hccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5666665 466799999998875331 36899997 56899999999999875
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=209.61 Aligned_cols=333 Identities=14% Similarity=0.120 Sum_probs=216.3
Q ss_pred CCCeEEeCCCCC---CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT---TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~---~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|.. --..++.+.+++.+.+.+... . ......++++++++++.+..+ .+.++++++++++
T Consensus 28 G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~------~-~~~~~~~~~~~la~~l~~~~~--~~~~~~~~sG~~a 98 (377)
T PRK02936 28 GKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWH------V-SNLFTNSLQEEVASLLAENSA--GDLVFFCNSGAEA 98 (377)
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccc------c-ccccCCHHHHHHHHHHHhcCC--CCEEEEeCCcHHH
Confidence 567899888862 123778899999999875321 1 122446789999999865333 3589999999999
Q ss_pred HHHHHHh---cCCCCEEEEeCCCchhhHhH-HHHhccccc---cccccCccceeEEeecCCCCCccCCCCCCCCccEEEE
Q 013521 148 ISRLQML---LGSNVTVAVQDPSFPAYIDT-SVIVGQAGK---FLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFF 220 (441)
Q Consensus 148 l~~l~~l---~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i 220 (441)
+.....+ ...++.|++.+++|++.... ....+.... +.+.. .++..++.++...+...+ .++++++++
T Consensus 99 ~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~l~~~~--~~~~~~ii~ 173 (377)
T PRK02936 99 NEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLL---PGFTHVPFNDIKALKEVM--NEEVAAVML 173 (377)
T ss_pred HHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCC---CCceEeCCCCHHHHHHhc--cCCeEEEEE
Confidence 8863232 23346799999999875322 222221110 00000 122333322111111101 256788887
Q ss_pred cCCCCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 221 CSPNNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 221 ~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
..+++++|.. .+.+.+++|.++|++||+++|+||+|..|...+.+.+.....-.+| +.+|||.++ +|+|+||++
T Consensus 174 e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~d----i~t~sK~l~-~G~~ig~v~ 248 (377)
T PRK02936 174 EVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPD----IVTVAKGLG-NGIPVGAMI 248 (377)
T ss_pred ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCc----EEEEccccc-CCCccEEEE
Confidence 7779999977 5889999999999999999999999988766553322222321233 347999999 999999999
Q ss_pred eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCeee--CC
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVN--GG 375 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~ 375 (441)
+++++. +.+.........+.+++.|.++.++++.... +...++++++.+.+.+.|++. ++... ..
T Consensus 249 ~~~~~~--------~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 317 (377)
T PRK02936 249 GKKELG--------TAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECVKNIR 317 (377)
T ss_pred EcHHHH--------hhccCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEe
Confidence 988773 3443222233445789999999999863211 334566667777777777653 22211 11
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 376 KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
..|+++|++++.. ...+.. .+.++||.+.|+ +.+++||+. ..+++++++++++|++++
T Consensus 318 ~~g~~~~i~~~~~-~~~~~~-~l~~~gv~v~~~------g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 318 GKGLMIGIECTEE-VAPVIE-QLREEGLLVLSA------GPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred ecceEEEEEecch-HHHHHH-HHHHCCeEEecC------CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 3678999999742 444555 455669999874 257899994 668999999999999875
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=213.73 Aligned_cols=333 Identities=14% Similarity=0.144 Sum_probs=211.1
Q ss_pred CCCeEEeCCC---CCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG---DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g---~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..| .+--..+|.+.+++.+.+.+..... . .+. ..-..++.+.+++. .+ .+.+++++++++|
T Consensus 39 G~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~-~~~-~~~~~~l~~~l~~~----~~--~~~~~~~~sGseA 109 (403)
T PRK05093 39 GKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHIS-N-VFT-NEPALRLAKKLIDA----TF--AERVFFANSGAEA 109 (403)
T ss_pred CCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCccc-C-ccC-CHHHHHHHHHHHhh----CC--CCEEEEeCchHHH
Confidence 5678998776 2212377899999999887532111 1 111 11123444555443 22 3688888888888
Q ss_pred HHHHHHhc---------CCCCEEEEeCCCchhhHhHHHHh-ccc---cccccccCccceeEEeecCCCCCccCCCCCCCC
Q 013521 148 ISRLQMLL---------GSNVTVAVQDPSFPAYIDTSVIV-GQA---GKFLKETGKYRNIVYMNCRPENNFFPDLSTTSR 214 (441)
Q Consensus 148 l~~l~~l~---------~~gd~Vlv~~p~y~~~~~~~~~~-g~~---~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 214 (441)
......+. ...+.|+..+-+|++....+... +.. ..+.+.. .+++.++..+-+.+...+ .++
T Consensus 110 ~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~l~~~l--~~~ 184 (403)
T PRK05093 110 NEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKP---ADITHVPFNDLAAVKAVI--DDH 184 (403)
T ss_pred HHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCC---CCcEEeCCCCHHHHHHHh--cCC
Confidence 77532222 12357888888888864332222 210 0000000 123334332111111111 246
Q ss_pred ccEEEEcCCCCccccCC--CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 215 TDIIFFCSPNNPTGHAA--TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 215 ~~~v~i~~p~NPtG~~~--~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
+++|+++ |.||+|-++ +.+.+++|+++|++||+++|+||+|..+.+.+.+.+.....-.++ +.||||.++ +|
T Consensus 185 ~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd----i~s~sK~l~-~G 258 (403)
T PRK05093 185 TCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPD----ILTSAKALG-GG 258 (403)
T ss_pred eEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCC----EEEeccccc-CC
Confidence 7776664 888888765 899999999999999999999999998766654332222221233 568999998 99
Q ss_pred ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC---
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG--- 369 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--- 369 (441)
+|+||+++++++. +.+.........+.+++.|.++.+.|+... -....+.++++++++.+.|++++
T Consensus 259 ~rig~vv~~~~i~--------~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~ 327 (403)
T PRK05093 259 FPIGAMLTTAEIA--------SHFKVGTHGSTYGGNPLACAVAEAVFDIIN---TPEVLEGVKARRQRFVDGLQKINQKY 327 (403)
T ss_pred cceEEEEEcHHHH--------hhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999998873 334322233344578899988888764211 13456888899999999998762
Q ss_pred -CeeeCCCCceEEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 370 -LKVNGGKNAPYVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 370 -~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+....+..|.++|+.++.. ...+++..++++ ||.+.|+ +.+++|++ +..+++++++++++|.+++
T Consensus 328 ~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~-Gv~v~~~------g~~~lRl~~~~~~~~~~i~~~~~~l~~~l 398 (403)
T PRK05093 328 GVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEE-GVMVLVA------GPDVLRFAPSLVIEEADIDEGLARFEKAV 398 (403)
T ss_pred CCeEeEeeCceEEEEEecCcchhHHHHHHHHHHHC-CeEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2222334688999998632 355777777765 9999874 34789996 4558999999999998753
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=214.92 Aligned_cols=337 Identities=19% Similarity=0.213 Sum_probs=217.3
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHH---hhhCCCCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKF---YKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~~~I~~t~G~~~al~ 149 (441)
.+++++.|.++...|..+.+++... ... ..+..|.+. -...++++++++. .+.++++++++++|+|+++++.
T Consensus 69 ~~~~lg~g~~~~~~p~~~~~~~~~~-~~~---~~y~~~~~~-~~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~ 143 (447)
T PRK00451 69 YPSFLGAGAYDHYIPAVVDHIISRS-EFY---TAYTPYQPE-ISQGTLQAIFEYQTMICELTGMDVANASMYDGATALAE 143 (447)
T ss_pred CcccCcccccCCcCcHHHHHHHhch-hHH---HhcCCCCCc-cchHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHH
Confidence 5788999998887777766555432 111 122222221 2344666666443 5566888889999999999998
Q ss_pred H-HHHh-cCCCCEEEEeCCCchhhHhHHHHhcc-ccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCC
Q 013521 150 R-LQML-LGSNVTVAVQDPSFPAYIDTSVIVGQ-AGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSP 223 (441)
Q Consensus 150 ~-l~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p 223 (441)
. +.++ ..+||+|++.++.|+.+...+..++. .| .+++.++.+++ ..+.+ +++ .+++++|++++|
T Consensus 144 ~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G---------~~~~~v~~~~~-~~d~~~l~~~i~~~t~~v~l~~p 213 (447)
T PRK00451 144 AALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQG---------IEVVEVPYEDG-VTDLEALEAAVDDDTAAVVVQYP 213 (447)
T ss_pred HHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCC---------cEEEEecCCCC-CCCHHHHHHhcCCCeEEEEEECC
Confidence 7 4555 47999999999999998877765311 11 48888888753 32221 221 367999999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEE--cccccccccCCCCCcccccCCCcceeEEEe---cCCcccCCccceeEEE
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVY--DSAYAAYITDPSPRSIYEIPGAREVAIEIS---SFSKFAGFTGVRLGWT 298 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~--De~~~~~~~~~~~~~~~~~~~~~~~~i~i~---S~SK~~~~~G~r~G~l 298 (441)
||||.+.+ +++|.++|+++|+++++ |.+... . ... ++..+.++++. +|||.++++|+|+||+
T Consensus 214 -n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g--~---~~~----~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l 280 (447)
T PRK00451 214 -NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLG--L---LKP----PGEYGADIVVGEGQPLGIPLSFGGPYLGFF 280 (447)
T ss_pred -CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhc--c---CCC----cccCCCCEEEECCCcCCCCCCCCCCCchHH
Confidence 89999987 88999999999999988 433211 0 000 11223446666 6777777889999999
Q ss_pred EeeccccccCCch--------------------hHHHHHHHHhhhcCCCcHHHH-HHHHHhcCCCcHHHHHHHHHHHHHH
Q 013521 299 VVPEELRYSNGYP--------------------VIKDFNRIVCTCFNGASNIVQ-AGGLACLSPDGFQALRTVIDYYKEN 357 (441)
Q Consensus 299 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~~~ 357 (441)
+++++++...... .....+........+.+...+ .++...+...+...+++.++++.++
T Consensus 281 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~ 360 (447)
T PRK00451 281 ATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQK 360 (447)
T ss_pred HhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 9988775321000 000011111111112222223 2232222212234578899999999
Q ss_pred HHHHHHHHHhC-CCeeeCCCCceEEE--EEcCCCChHHHHHHHHHhcCeE-EeCCCCcCCCCCCeEEEEe--ecCHHHHH
Q 013521 358 AKIIVDAFQSL-GLKVNGGKNAPYVW--VQFPGSSSWDVFAEILEKTHIL-TIPGSGFGPGGNEHIRVSA--FGHREYIS 431 (441)
Q Consensus 358 ~~~l~~~L~~~-g~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~gi~-v~pg~~f~~~~~~~iRls~--~~~~~~~~ 431 (441)
++++.+.|+++ |+++. .+++|.+ ++++ ....++.++|+++ ||. ..+++.|.+...+++|+++ .+++++++
T Consensus 361 ~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~-~~~~~~~~~L~~~-gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~ 436 (447)
T PRK00451 361 AHYLAERLAEIGGVELF--DGPFFNEFVVRLP-KPAEEVNEALLEK-GILGGYDLGRYYPELGNHLLVCVTEKRTKEDID 436 (447)
T ss_pred HHHHHHHHhhcCCEEec--CCCeEEEEEEecC-CCHHHHHHHHHhc-CCCCCcccccccCCcCCEEEEecCCCCCHHHHH
Confidence 99999999988 67765 3444543 5554 3567888888776 665 4566666554467999997 46899999
Q ss_pred HHHHHHHhhC
Q 013521 432 EACRRLKNFL 441 (441)
Q Consensus 432 ~~l~~l~~~l 441 (441)
++++.|++++
T Consensus 437 ~l~~~L~~~~ 446 (447)
T PRK00451 437 ALVAALGEVL 446 (447)
T ss_pred HHHHHHHHHh
Confidence 9999998763
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-24 Score=209.16 Aligned_cols=220 Identities=18% Similarity=0.179 Sum_probs=160.6
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH-----Hhccccccc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV-----IVGQAGKFL 185 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~ 185 (441)
+.+-..+|++.+|++. +. +.+++++|+++|+.+ +..++++||+|+++.|.|+++...+. ..|
T Consensus 74 ~~Pt~~~LE~~lA~l~----g~--~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G------ 141 (418)
T PLN02242 74 FNPTVLNLGRQMAALE----GT--EAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCN------ 141 (418)
T ss_pred CChhHHHHHHHHHHHh----CC--CeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccC------
Confidence 3556788999999985 43 567789999999987 67889999999999999998866653 234
Q ss_pred cccCccceeEEeecCCCCCccCCCCCCC-CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC
Q 013521 186 KETGKYRNIVYMNCRPENNFFPDLSTTS-RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS 264 (441)
Q Consensus 186 ~~~~~~~~v~~v~~~~~~~~~~~~~~~~-~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~ 264 (441)
.+++.++.++.+.+. ... .+ ++++|++++|+||||.+++ +++|+++|++||++||+|++|.++.+.
T Consensus 142 ------~~~~~~d~~d~e~l~-~~i-~~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~-- 208 (418)
T PLN02242 142 ------ITTTFVDITDLEAVK-KAV-VPGKTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLS-- 208 (418)
T ss_pred ------ceEEEcCCCCHHHHH-Hhc-CcCCCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCC--
Confidence 366666543111111 111 24 5899999999999999987 889999999999999999999865542
Q ss_pred CCcccccCCCcceeEEEecCCcccCCccce-eEEEEeeccccccCCchhHHHHHHHHh--hhcCCCcHHHHHHHHHhcCC
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTGVR-LGWTVVPEELRYSNGYPVIKDFNRIVC--TCFNGASNIVQAGGLACLSP 341 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r-~G~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~ 341 (441)
+. .+ +.+|++.||||.++.+|.+ .||++++++++ +.+...+. ....+.+...|.|++.+...
T Consensus 209 ~~---~~----g~divv~S~SK~l~g~g~~~gG~iv~~~~li--------~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l 273 (418)
T PLN02242 209 PA---RL----GADVVVHSISKFISGGADIIAGAVCGPAELV--------NSMMDLHHGALMLLGPTMNPKVAFELSERL 273 (418)
T ss_pred HH---Hc----CCcEEEEeCccccCCCCCceEEEEEcCHHHH--------HHHHHHhhhhhhccCCCCCHHHHHHHHcCC
Confidence 11 22 2459999999999888887 59999888773 44544433 12334555667766666543
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 342 DGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
. .+..+.++++++++.+.+.|+++++++..
T Consensus 274 ~---tl~~r~~~~~~~a~~la~~L~~~~~~V~y 303 (418)
T PLN02242 274 P---HLSLRMKEHCRRAMEYAKRMKELGLKVIY 303 (418)
T ss_pred C---cHHHHHHHHHHHHHHHHHHHHhCCCEEEC
Confidence 2 34567789999999999999998776653
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=209.99 Aligned_cols=298 Identities=12% Similarity=0.170 Sum_probs=207.9
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC--CCcEEEcCCcHHHHHH-HHHhcC-------
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISR-LQMLLG------- 156 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~I~~t~G~~~al~~-l~~l~~------- 156 (441)
+..+.+.+...+. .....|....+..++++++++|+.+.++.+ ++++++|+|+++++.+ +..+..
T Consensus 12 ~~~~~~~~~~~~n-----~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~ 86 (345)
T cd06450 12 PALLLEMLTSAKN-----AIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLK 86 (345)
T ss_pred HHHHHHHHHHhcC-----CCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhh
Confidence 3445555555554 233348778899999999999998866664 5689999999999987 444421
Q ss_pred -----C--CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC------CccEEEE
Q 013521 157 -----S--NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS------RTDIIFF 220 (441)
Q Consensus 157 -----~--gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~------~~~~v~i 220 (441)
+ ++.|+++.++|.++...+...| .+++.++.++++..+++ +++ .+ +++++++
T Consensus 87 ~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~ 154 (345)
T cd06450 87 AGGGRGIDKLVIVCSDQAHVSVEKAAAYLD------------VKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVA 154 (345)
T ss_pred cccccccCCeEEEEcCcchhHHHHHHHHHh------------cCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEE
Confidence 2 3478889999999988888887 58889988765432222 211 12 6788888
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
++|+||||.+.+ +++|+++|+++|+++++|++|+.+..... .... .....+...+..|++|+++ ++.++|+++
T Consensus 155 ~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~l~-~p~g~g~~~ 228 (345)
T cd06450 155 TAGTTDTGAIDP---LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL--DFGIERVDSISVDPHKYGL-VPLGCSAVL 228 (345)
T ss_pred ecccCCCCCCCC---HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH--hcCccccCEEEEchhHhhC-CCcchHHHH
Confidence 999999999977 88999999999999999999987654321 1111 1111233467789999886 777888865
Q ss_pred eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCc
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNA 378 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 378 (441)
++ .+.+.++...+.. ..+++.+++..+.++++.+.|.++ ++.+..++.+
T Consensus 229 ~~---------------------------~~~~~~~l~~l~~---~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 278 (345)
T cd06450 229 VR---------------------------ALKLWATLRRFGR---DGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNL 278 (345)
T ss_pred HH---------------------------HHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCce
Confidence 43 2334444444432 335777888888999999999887 7776554556
Q ss_pred eEEEEEcCC-----CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--c-CHHHHHHHHHHHHhh
Q 013521 379 PYVWVQFPG-----SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--G-HREYISEACRRLKNF 440 (441)
Q Consensus 379 ~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~-~~~~~~~~l~~l~~~ 440 (441)
.++.+.+++ ....++.++|. ++|+.+.++..|. ...++|+++. . ++++++++++.|+++
T Consensus 279 ~iv~f~~~~~~~~~~~~~~i~~~L~-~~g~~~~~~~~~~--~~~~lRis~~~~~~t~~di~~l~~~l~~~ 345 (345)
T cd06450 279 SLVCFRLKPSVKLDELNYDLSDRLN-ERGGWHVPATTLG--GPNVLRFVVTNPLTTRDDADALLEDIERA 345 (345)
T ss_pred eEEEEEECCcchhhHHHHHHHHHHH-hcCCEEEEeeEEC--CeEEEEEEecCCCCCHHHHHHHHHHHHhC
Confidence 677777764 23446666665 4466666654443 4678999973 2 789999999999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-24 Score=207.95 Aligned_cols=337 Identities=11% Similarity=0.033 Sum_probs=211.1
Q ss_pred CCCCeEEeCCCCCC--C-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDTT--Q-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~~--~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|-.. + ..+|.+.+++.+.+.+... ...+.......+|.+.++++. + .+.+++++++++
T Consensus 38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~----~--~~~~~~~~SGse 108 (396)
T PRK04073 38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTL---TSRAFHSDQLGPWYEKVAKLT----G--KDMVLPMNTGAE 108 (396)
T ss_pred CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccc---cccccCCHHHHHHHHHHHhcC----C--CCeEEEcCChHH
Confidence 35678888666321 2 2678999999998876432 111112223345555555542 3 368999999999
Q ss_pred HHHH-HHHh--c-------CCC-CEEEEeCCCchhhHhHH-HHhccccccccccCccceeEEeecCCCCCccCCCCCCCC
Q 013521 147 DISR-LQML--L-------GSN-VTVAVQDPSFPAYIDTS-VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSR 214 (441)
Q Consensus 147 al~~-l~~l--~-------~~g-d~Vlv~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 214 (441)
|+.. +... . ++| +.|+...-+|++....+ ...+..............+..++..+.+.+...+ .++
T Consensus 109 A~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i--~~~ 186 (396)
T PRK04073 109 AVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAI--TPN 186 (396)
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCCCHHHHHHhc--ccC
Confidence 9876 4222 1 134 67888888888764333 2222110000000000122333332111111101 256
Q ss_pred ccEEEEcCCCCccccCCCHH-HHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccc
Q 013521 215 TDIIFFCSPNNPTGHAATWQ-QLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 215 ~~~v~i~~p~NPtG~~~~~~-~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
+++|+++.|+||||.+++.+ .+++|.++|++||+++|+||+|..+...+...........+| +.+|||.+|.+|+
T Consensus 187 ~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pd----i~~~sK~lg~gg~ 262 (396)
T PRK04073 187 TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPD----MYILGKALGGGVF 262 (396)
T ss_pred eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCC----EEEecccccCCCC
Confidence 78877777799999998764 699999999999999999999998755432211111111233 3458999998889
Q ss_pred eeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC---C
Q 013521 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG---L 370 (441)
Q Consensus 294 r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~ 370 (441)
|+||++++++++ +.+.........+.+++.+.++.+.|+.... +...++.+++++++.+.|++++ +
T Consensus 263 ~ig~~~~~~~i~--------~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~---~~l~~~~~~~~~~l~~~L~~l~~~~i 331 (396)
T PRK04073 263 PISCVAANRDIL--------GVFTPGSHGSTFGGNPLACAVSIAALEVLEE---EKLPERSLELGEYFKEQLKEIDNPMI 331 (396)
T ss_pred cceEEEEcHHHH--------hhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 999999998773 3343222333445788999989888862111 2344666777888888888753 2
Q ss_pred eeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 371 KVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.... ..|.+++++++. ...++..++++ +||.+.+. ++++|||+ +..+++++++++++|++++
T Consensus 332 ~~~~-~~g~~~~~~~~~-~~~~~~~~l~~-~Gv~~~~~------~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 332 KEVR-GRGLFIGVELNE-PARPYCEALKE-EGLLCKET------HETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred ccee-cceEEEEEEecc-hHHHHHHHHHH-CCeEEecC------CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 2222 357888988863 45567777665 59999763 24689999 5679999999999999864
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=206.56 Aligned_cols=271 Identities=18% Similarity=0.173 Sum_probs=181.6
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHH----Hhcccc
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAG 182 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~ 182 (441)
+.+| +.+-..+|++.+|++. +.+. .++++|+++++.++..++++||+|+++.|+|++...... ..|
T Consensus 46 y~r~-~~pt~~~le~~la~l~----g~~~--~~~~~sG~~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G--- 115 (366)
T PRK08247 46 YSRT-GNPTRGVLEQAIADLE----GGDQ--GFACSSGMAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWN--- 115 (366)
T ss_pred ccCC-CCchHHHHHHHHHHHh----CCCc--EEEEcCHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccC---
Confidence 4455 3456789999999986 5543 467777788998866788999999999999998544433 345
Q ss_pred ccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC
Q 013521 183 KFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD 262 (441)
Q Consensus 183 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~ 262 (441)
++++.++..+.+.+...+ .+++++|++++|+||+| +..++++|+++|++||+++|+|++|......
T Consensus 116 ---------~~v~~vd~~d~~~l~~~i--~~~tklv~le~P~NP~~---~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~ 181 (366)
T PRK08247 116 ---------VRFVYVNTASLKAIEQAI--TPNTKAIFIETPTNPLM---QETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ 181 (366)
T ss_pred ---------ceEEEECCCCHHHHHHhc--ccCceEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCcccccc
Confidence 477777653211111111 35789999999999975 5566999999999999999999999532111
Q ss_pred CCCCcccccCCCcceeEEEecCCcccCC-ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC
Q 013521 263 PSPRSIYEIPGAREVAIEISSFSKFAGF-TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP 341 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~i~S~SK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 341 (441)
.++ ..+.++++.|+||.++. ++++.||++++++.+ .+.+...+.......+++.+..+...++
T Consensus 182 ---~p~-----~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l-------~~~~~~~~~~~g~~~s~~~a~l~~~~l~- 245 (366)
T PRK08247 182 ---RPL-----EEGADIVIHSATKYLGGHNDVLAGLVVAKGQEL-------CERLAYYQNAAGAVLSPFDSWLLIRGMK- 245 (366)
T ss_pred ---Cch-----hcCCcEEEeecceeccCCCceeeeEEecChHHH-------HHHHHHHHHhcCCCCChHHHHHHHhccC-
Confidence 111 12345999999999973 256899999874332 4555555555545567777766665554
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhC-CCee--eCCCCceEEEEEcCCCChHHHHHHHHH-------------hcCeEE
Q 013521 342 DGFQALRTVIDYYKENAKIIVDAFQSL-GLKV--NGGKNAPYVWVQFPGSSSWDVFAEILE-------------KTHILT 405 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~-------------~~gi~v 405 (441)
.+..+.++++++++.+.+.|+++ ++.. +++.+|+|.| ++++ .+...++++ .+.+.+
T Consensus 246 ----tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~---~~~~~~~~~~l~~~~~~~slg~~~sl~~ 317 (366)
T PRK08247 246 ----TLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQD---EEWVNPFLKSLKLITFAESLGGVESFIT 317 (366)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECC---HHHHHHHHHcCCcceEccCCCCCceEEE
Confidence 23455567799999999999987 6653 3335666666 6652 222222222 245666
Q ss_pred eCCCCcCC-----------CCCCeEEEEeec
Q 013521 406 IPGSGFGP-----------GGNEHIRVSAFG 425 (441)
Q Consensus 406 ~pg~~f~~-----------~~~~~iRls~~~ 425 (441)
.|++.++. -.++.+|||++.
T Consensus 318 ~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl 348 (366)
T PRK08247 318 YPATQTHADIPEEIRIANGVCNRLLRFSVGI 348 (366)
T ss_pred CCcccccccCCHHHHHhcCCCCCeEEEEecc
Confidence 78765532 125689999864
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=206.66 Aligned_cols=343 Identities=10% Similarity=0.042 Sum_probs=209.3
Q ss_pred CCCCeEEeCCCCCCC---CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcH
Q 013521 70 PDARLIRLGIGDTTQ---PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG-DEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~---~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~ 145 (441)
.++.++|+..|.... ..++.+.+++.+.+.+.. . .+.+..+.. ...++|+++....+... +.++++++++
T Consensus 39 dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~----~-~~~~~~~~~-~~~~la~~l~~~~~~~~~~~~~f~~sGs 112 (425)
T PRK08088 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS----H-TCFQVLAYE-PYLELCEKMNQKVPGDFAKKTLLVTTGS 112 (425)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCC----C-ccccccCCH-HHHHHHHHHHHhCCCCCCCEEEEeCCcH
Confidence 456788887765332 248899999999987532 1 111111222 33477777755333322 3555555555
Q ss_pred HHHH----HHHHhcCCCCEEEEeCCCchhhHhHHHHhccc--c---ccccccCccceeEEeecCCCCCccCC-----CCC
Q 013521 146 SDIS----RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQA--G---KFLKETGKYRNIVYMNCRPENNFFPD-----LST 211 (441)
Q Consensus 146 ~al~----~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~--~---~~~~~~~~~~~v~~v~~~~~~~~~~~-----~~~ 211 (441)
+|+. +...+.++ ..|+...++|++....+...+.. . .+...... .....+|.+.. +...+ ++.
T Consensus 113 ea~e~Alklar~~~~r-~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~-~~~~~~~~~~l~~ 189 (425)
T PRK08088 113 EAVENAVKIARAATKR-SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGH-VYRALYPCPLH-GVSEDDAIASIER 189 (425)
T ss_pred HHHHHHHHHHHHHhCC-CeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCC-cEEcCCCcccc-CccHHHHHHHHHH
Confidence 5544 32333344 45666799999987666555421 0 00000000 01111222221 11100 111
Q ss_pred -------CCCccEEEEcCC--CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEe
Q 013521 212 -------TSRTDIIFFCSP--NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEIS 282 (441)
Q Consensus 212 -------~~~~~~v~i~~p--~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 282 (441)
..+..++++ .| +|++....+.+.+++|+++|++||+++|+||+|..+...+...++... +.+..+.
T Consensus 190 ~l~~~~~~~~~aavi~-Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~----~~~pdi~ 264 (425)
T PRK08088 190 IFKNDAAPEDIAAIII-EPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQM----GVAADLT 264 (425)
T ss_pred HHHhccCCCceEEEEE-CcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhc----CCCCCEE
Confidence 234556554 45 888888899999999999999999999999999976554322222122 2234489
Q ss_pred cCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHH
Q 013521 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKII 361 (441)
Q Consensus 283 S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l 361 (441)
||||.++ +|+|+||++++++++ +.+.........+.+++.|.++.++++.... .+++++++..+..++.+
T Consensus 265 s~sK~l~-~G~rig~v~~~~~~~--------~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 335 (425)
T PRK08088 265 TFAKSIA-GGFPLAGVTGRAEVM--------DAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGL 335 (425)
T ss_pred EEecccc-CCCcceeeEecHHHH--------hhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999998 999999999998874 3443333444556789999999999984333 45666666655555666
Q ss_pred HHHHHhCCC-eeeCCCCceEEEEEcCC-C--------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHH
Q 013521 362 VDAFQSLGL-KVNGGKNAPYVWVQFPG-S--------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREY 429 (441)
Q Consensus 362 ~~~L~~~g~-~~~~~~~~~~~~~~~~~-~--------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~ 429 (441)
.+.+++++. ....+ .|.++|+.+.. . ....+...+++ +||.+.|+..| .+.|||++. .++++
T Consensus 336 ~~l~~~~~~~~~v~g-~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~-~Gv~~~~~~~~----~~~iRl~~~~~~t~~e 409 (425)
T PRK08088 336 LAIAEKHPEIGDVRG-LGAMIAIELFEDGDHSKPNAKLTAQIVARARD-KGLILLSCGPY----YNVLRILVPLTIEDAQ 409 (425)
T ss_pred HHHHHhCCCeEEEec-cceEEEEEEecCCCCCCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEEEECCCCcCHHH
Confidence 555555543 22222 38899999831 1 13445556555 59998876544 368999975 37999
Q ss_pred HHHHHHHHHhhC
Q 013521 430 ISEACRRLKNFL 441 (441)
Q Consensus 430 ~~~~l~~l~~~l 441 (441)
+++++++|.+++
T Consensus 410 i~~~i~~l~~~l 421 (425)
T PRK08088 410 IRQGLEIIAQCF 421 (425)
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-23 Score=202.96 Aligned_cols=334 Identities=17% Similarity=0.156 Sum_probs=202.1
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHh-hccCCCCCCCCCCCcCcHHHHHH-HHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAF-ALSTVKGYKGYGAEQGNMALRTA-IADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~-~~~~~~~~~~Y~~~~g~~~lr~~-ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
+..++|..++++ +|+.+.+++...+. .+........|....-..+..++ ..+.+.+.++.+..+|++++|+ +++.
T Consensus 25 ~~~~~l~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt-~al~ 101 (416)
T PRK00011 25 EEHIELIASENF--VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGS-QANA 101 (416)
T ss_pred hcCeeeecccCc--CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeecCCch-HHHH
Confidence 357999988865 67889989877653 22111111122111011222222 2223333457777778777775 5776
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHH--HhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEEE
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSV--IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIFF 220 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~i 220 (441)
+ +..++++||+|+++.|+|+++..... ..+..| .+++.++++.+ ++..|+++ ..+++++++
T Consensus 102 ~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~k~v~~ 171 (416)
T PRK00011 102 AVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKL---------YNVVSYGVDEE-TGLIDYDEVEKLALEHKPKLIIA 171 (416)
T ss_pred HHHHHhcCCCCEEEEeccccCCccccccccccccce---------eeEeecCcCcc-cCCcCHHHHHHHHHhcCCCEEEE
Confidence 5 67788999999999999987532211 111111 36777777542 22333221 247899888
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++++|| ...+ +++|+++|++||+++|+|++|.. +...+. +..+. ...++++|+||++ +|+|.||+
T Consensus 172 ~~~~~~--~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~------~~di~~~S~~K~l--~g~~gg~i 238 (416)
T PRK00011 172 GASAYS--RPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP------HADVVTTTTHKTL--RGPRGGLI 238 (416)
T ss_pred CCCcCC--CccC---HHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC------CCcEEEecCCcCC--CCCCceEE
Confidence 766654 4445 88999999999999999999863 222211 22221 2248899999976 68999999
Q ss_pred Eeec-cccccCCchhHHHHHHHHhhhcCCCc-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC-C
Q 013521 299 VVPE-ELRYSNGYPVIKDFNRIVCTCFNGAS-NIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG-G 375 (441)
Q Consensus 299 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~ 375 (441)
++++ ++ .+.+.........+.+ ...+.++..++.....+++++++++++++++++.+.|++.|+++.. .
T Consensus 239 ~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 310 (416)
T PRK00011 239 LTNDEEL--------AKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVVSGG 310 (416)
T ss_pred EeCCHHH--------HHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeeeecC
Confidence 9975 44 3445443322222222 2222222222221111345778899999999999999998887753 2
Q ss_pred CCceEEEEEcCCC--ChHHHHHHHHHhcCeEEeCCC-CcC---CCCCCeEEEEe------ecCHHHHHHHHHHHHhh
Q 013521 376 KNAPYVWVQFPGS--SSWDVFAEILEKTHILTIPGS-GFG---PGGNEHIRVSA------FGHREYISEACRRLKNF 440 (441)
Q Consensus 376 ~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~-~f~---~~~~~~iRls~------~~~~~~~~~~l~~l~~~ 440 (441)
..++++|+.+++. +..++.+ .|+++||.+..+. .|. +..+..+|++. ..+.++++++++.|+++
T Consensus 311 ~~~~~~~i~~~~~~~~~~~~~~-~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~ 386 (416)
T PRK00011 311 TDNHLVLVDLRSKGLTGKEAEA-ALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADV 386 (416)
T ss_pred CCCeEEEEeCcccCCCHHHHHH-HHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHH
Confidence 3458899999632 3445444 5566799998432 121 22346799964 22689999999999875
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=204.75 Aligned_cols=336 Identities=17% Similarity=0.152 Sum_probs=211.9
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCC----CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGY----GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y----~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
.+.|+.+... +.|+.+.+++.+.+......+....+ .......++|+.+++++ ++++++|++|+|++++++
T Consensus 4 ~~yld~aa~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~v~~~~g~t~a~~ 78 (402)
T TIGR02006 4 PIYLDYAATT-PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELI----GADSREIVFTSGATESNN 78 (402)
T ss_pred cEEeeCCcCC-CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCCHHHHHH
Confidence 3677766654 57788999998877543211111011 11234566788888875 888899999999999998
Q ss_pred H-HHHh----cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEc
Q 013521 150 R-LQML----LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFC 221 (441)
Q Consensus 150 ~-l~~l----~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~ 221 (441)
+ +..+ .++||+|++..++|+++...+..+...| .+++.++.++++.++++ +++ .+++++++++
T Consensus 79 ~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g---------~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~ 149 (402)
T TIGR02006 79 LAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREG---------FEVTYLPPKSNGLIDLEELKAAIRDDTILVSIM 149 (402)
T ss_pred HHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcC---------CEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEE
Confidence 7 4333 3689999999999998776654442222 48888888754332221 111 3578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
+++||||.+++ +++|.++|+++|+++++|++++... .+..+.. .+..+++.|++|.+|.+| +|+++++
T Consensus 150 ~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~---~~~~~~~----~~~D~~~~s~~K~~gp~G--~G~l~~~ 217 (402)
T TIGR02006 150 HVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSVGK---IPINVNE----LKVDLMSISGHKIYGPKG--IGALYVR 217 (402)
T ss_pred CCCcCceeccc---HHHHHHHHHHcCCEEEEEcchhcCC---cccCccc----cCCCEEEEehhhhcCCCc--eEEEEEc
Confidence 99999999998 7899999999999999999987321 1222222 233488999999887446 8998888
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCC--c
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKN--A 378 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~ 378 (441)
++......+. .............+.+.....+..+.++. ....++...+++++.++.+.+.|+++ ++.+..+.. .
T Consensus 218 ~~~~~~~~~~-~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~ 295 (402)
T TIGR02006 218 RKPRVRLEAL-IHGGGHERGMRSGTLPTHQIVGMGEAFRI-AKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRV 295 (402)
T ss_pred cCCCCCCCce-ecCCCccCCccCCCccHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccC
Confidence 6543211100 00000000111122333333333344431 11345777788999999999999876 666543211 1
Q ss_pred e-EEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCC-----------------CCCeEEEEe--ecCHHHHHHHHHHHH
Q 013521 379 P-YVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG-----------------GNEHIRVSA--FGHREYISEACRRLK 438 (441)
Q Consensus 379 ~-~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~~~~iRls~--~~~~~~~~~~l~~l~ 438 (441)
+ .+.+.++.....++... + .+|.+..|..+.+. ..++||+|+ +++++|++++++.|+
T Consensus 296 p~~~~v~f~~~~~~~~~~~-l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~ 372 (402)
T TIGR02006 296 PGNLNVSFNYVEGESLIMA-L--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVK 372 (402)
T ss_pred CCeEEEEEeCcCHHHHHHh-c--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHH
Confidence 1 11233333334444433 2 48999888776431 137899997 558999999999998
Q ss_pred hh
Q 013521 439 NF 440 (441)
Q Consensus 439 ~~ 440 (441)
++
T Consensus 373 ~~ 374 (402)
T TIGR02006 373 SA 374 (402)
T ss_pred HH
Confidence 75
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=198.53 Aligned_cols=334 Identities=12% Similarity=0.105 Sum_probs=215.7
Q ss_pred CCCeEEeCCCC--CCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~a 147 (441)
++.++|+..|. ..+...|.+.+++.+.+.... .+ +..-..++++++|+.+. + .++ .++++++++++
T Consensus 28 g~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~------~~-~~~~~~~~~~~la~~l~---~-~~~~~~~~~~SGseA 96 (375)
T PRK04260 28 GKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIW------HS-PNLYLNSLQEEVAQKLI---G-DKDYLAFFCNSGAEA 96 (375)
T ss_pred CCEEEECCCCcccccCCCCHHHHHHHHHHHHhcC------cc-cCccCCHHHHHHHHHHh---c-CcCCEEEEcCccHHH
Confidence 45688987663 334447889999999887532 12 12234668889998763 2 233 46788889888
Q ss_pred HHH-HHH--hcCCCCEEEEeCCCchhhH-hHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEc
Q 013521 148 ISR-LQM--LLGSNVTVAVQDPSFPAYI-DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~--l~~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~ 221 (441)
... +.. ...+++.|++.+.+|++.. ......+....-.........+...+.+ + ..+++. .+++.+|++.
T Consensus 97 ~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d-l~~l~~~l~~~~a~vi~e 172 (375)
T PRK04260 97 NEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFN---D-LNSVKALVNKNTAAVMLE 172 (375)
T ss_pred HHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCC---C-HHHHHHhcCCCeEEEEEC
Confidence 875 322 2345678999999988743 3333333211000000000011111111 1 111111 2466788877
Q ss_pred CCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
.++|++|... +.+.+++|.++|+++|+++|+||+|..+...+.+.+.....-.+| +.||||.++ +|+|+||+++
T Consensus 173 ~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pd----i~t~sK~l~-~G~~ig~~~~ 247 (375)
T PRK04260 173 LVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPD----IFTLAKGLA-NGVPVGAMLA 247 (375)
T ss_pred CeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCC----EEEeccccc-CCcceEEEEE
Confidence 8899999874 568899999999999999999999987655443322212222344 348999998 8999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCc
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLG-LKVNGGKNA 378 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~ 378 (441)
++++. +.+.........+.+++.+.++.+.++.... .++++.++..+..++.+.+.+.+++ +.... ..|
T Consensus 248 ~~~~~--------~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g 318 (375)
T PRK04260 248 KSSLG--------GAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTVR-GLG 318 (375)
T ss_pred cHHHH--------hhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe-ccc
Confidence 98763 3333222233445688899999998864322 4567777777777888888777664 33332 379
Q ss_pred eEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 379 PYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
+++|++++. +..++.+++.+ +||.+.|. +.+.+|++. ..+++++++++++|++++
T Consensus 319 ~~~~~~~~~-~~~~~~~~l~~-~Gi~v~~~------~~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 319 YMIGIETTA-DLSQLVEAARD-KGLIVLTA------GTNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred eEEEEEecC-cHHHHHHHHHh-CCCEEecC------CCCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 999999842 45566666665 59999874 247899997 338999999999998864
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-23 Score=195.02 Aligned_cols=335 Identities=19% Similarity=0.207 Sum_probs=244.2
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+.+++||+.+++ .+...+.+.+++.+++++++...+.. -++...-..+|.+.+|+|+ | .++.+++++|-...
T Consensus 38 ~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~----g-~e~al~f~SGy~AN 112 (388)
T COG0156 38 GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL----G-AEAALLFSSGFVAN 112 (388)
T ss_pred CceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh----C-CCcEEEEcccchhH
Confidence 457999999996 57788999999999999875322222 2555667788999999996 5 34799999999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC---CC-CccEEEEcCC
Q 013521 148 ISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST---TS-RTDIIFFCSP 223 (441)
Q Consensus 148 l~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~---~~-~~~~v~i~~p 223 (441)
+.++..+++++|.|+.....|.+....++..+ .+++.....+-..+...+.. .. +.++|++...
T Consensus 113 ~~~i~~l~~~~dli~~D~lnHASiidG~rls~------------a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegV 180 (388)
T COG0156 113 LGLLSALLKKGDLIFSDELNHASIIDGIRLSR------------AEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGV 180 (388)
T ss_pred HHHHHHhcCCCcEEEEechhhhhHHHHHHhCC------------CcEEEecCCCHHHHHHHHHhhhccCCCceEEEEecc
Confidence 99999999999999999999999999999887 47777766432111111111 11 3566666577
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCC--cceeEEEecCCcccCCccceeEEEEee
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGA--REVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~--~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
-...|.+.| +.+|++++++|+.++++||+|+-..+++....+.+..+. .+++|.++||||.||..| ||+.++
T Consensus 181 fSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~ 254 (388)
T COG0156 181 FSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGS 254 (388)
T ss_pred ccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceeeCc
Confidence 788999999 999999999999999999999977776554444432222 345799999999999888 999999
Q ss_pred ccccccCCchhHHHHHHH-HhhhcCC-CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCce
Q 013521 302 EELRYSNGYPVIKDFNRI-VCTCFNG-ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAP 379 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 379 (441)
..+. +.+... +...+.+ .++....++.+.++. .+....++++++++.+.+.+.+...++.+.+ ...+
T Consensus 255 ~~~~--------d~L~~~ar~~ifStalpP~~aaa~~~al~~--l~~~~~~r~~L~~~~~~~~~~~~~~~~~~~~-s~s~ 323 (388)
T COG0156 255 AALI--------DYLRNRARPFIFSTALPPAVAAAALAALRI--LEEGPERRERLQELAAFFRSLLKALGLVLLP-SESP 323 (388)
T ss_pred HHHH--------HHHHHhCCceeccCCCCHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHhcCCccCC-CCCC
Confidence 8873 444432 3333332 334443444555542 1223567888888888888777776777643 5677
Q ss_pred EEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 380 YVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 380 ~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
++.+-+.. ....++...++++ ||.+.+...-. +.+...+|+++ ..++++++.+++.|.++
T Consensus 324 I~pv~~gd~~~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 324 IIPVILGDEERALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred eeeeEeCCHHHHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 88777763 3455667777777 99998876543 45568899997 44899999999999875
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=201.29 Aligned_cols=213 Identities=15% Similarity=0.205 Sum_probs=150.2
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccccc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLK 186 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~ 186 (441)
+.++..+|++++|++. +. +++++++|+++++.. +..++++||+|+++.|.|+...... ...|
T Consensus 62 ~~p~~~~Le~~iA~~~----g~--~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G------- 128 (400)
T PRK06234 62 GNPTSTEVENKLALLE----GG--EAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYG------- 128 (400)
T ss_pred CCccHHHHHHHHHHHh----CC--CcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCC-------
Confidence 6678999999999996 43 467888888888886 6778999999999999998765443 4455
Q ss_pred ccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc--CcEEEEcccccccccCCC
Q 013521 187 ETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKAN--GSIIVYDSAYAAYITDPS 264 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~--~~~ii~De~~~~~~~~~~ 264 (441)
++++.++..+.+.+...+ .+++++|++++|+||||.+.+ +++|+++|+++ |+++|+|++|.......
T Consensus 129 -----~~v~~vd~~d~e~l~~~i--~~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~~- 197 (400)
T PRK06234 129 -----VEVTFVDTSNLEEVRNAL--KANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQR- 197 (400)
T ss_pred -----eEEEEECCCCHHHHHHHh--ccCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcCC-
Confidence 477777754211111111 367899999999999999999 88888999997 99999999998654321
Q ss_pred CCcccccCCCcceeEEEecCCcccCCcccee-EEEEeeccccccCCchhHHHHHHH--HhhhcCCCcHHHHHHHHHhcCC
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYSNGYPVIKDFNRI--VCTCFNGASNIVQAGGLACLSP 341 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~ 341 (441)
+ + .. +..+++.|+||.++.+|.|+ ||+++++++ ++.+... ........+++....+...+
T Consensus 198 ~--l-~~----g~Divv~S~sK~l~g~g~~~gG~v~~~~~~--------~~~l~~~~~~~~~g~~l~p~~a~l~~~~l-- 260 (400)
T PRK06234 198 P--L-QL----GADVVVHSATKYLNGHGDVIAGFVVGKEEF--------INQVKLFGIKDMTGSVIGPFEAFLIIRGM-- 260 (400)
T ss_pred c--h-hh----CCcEEEeeccccccCCCCceeEEEEecHHH--------HHHHHHHHHHHhcCCCCCHHHHHHHHhcc--
Confidence 1 2 11 23499999999998888775 999998876 3444321 21222334555433333333
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 342 DGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+.+..+.++.+++.+.+.+.|+++
T Consensus 261 ---~tl~~r~~~~~~na~~~a~~L~~~ 284 (400)
T PRK06234 261 ---KTLQIRMEKHCKNAMKVAKFLESH 284 (400)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHcC
Confidence 334556666778888888889876
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=197.04 Aligned_cols=212 Identities=22% Similarity=0.249 Sum_probs=150.0
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCch----hhHhHHHHhccccccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFP----AYIDTSVIVGQAGKFLKE 187 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~----~~~~~~~~~g~~~~~~~~ 187 (441)
.+...+|++++|++. +.+ ..+++++| ++++.. +..++++||+|+++.|.|+ .+...++..|
T Consensus 44 ~p~~~~L~~~lA~l~----g~~-~~v~~~sG-~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G-------- 109 (376)
T PRK06460 44 NPTVLELTKKIVELE----NAE-MGVAFSSG-MGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWG-------- 109 (376)
T ss_pred CccHHHHHHHHHHHh----CCC-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhC--------
Confidence 567899999999996 554 35666666 578886 6778899999999986553 4445566666
Q ss_pred cCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCc
Q 013521 188 TGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS 267 (441)
Q Consensus 188 ~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~ 267 (441)
.++..++.+.+ .....+ ..+++++|++++|+||||.+++ +++|+++|+++|++||+|++|.... .
T Consensus 110 ----~~v~~~~~~~~-~~l~~~-~~~~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~~------~ 174 (376)
T PRK06460 110 ----VNVDASNPGSD-NIIEKA-KSKRYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTPI------N 174 (376)
T ss_pred ----cEEEEECCCCH-HHHHHh-cCCCceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCccc------c
Confidence 47777776532 221111 1367899999999999999999 5678889999999999999997532 1
Q ss_pred ccccCCCcceeEEEecCCcccCCc-cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHH
Q 013521 268 IYEIPGAREVAIEISSFSKFAGFT-GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA 346 (441)
Q Consensus 268 ~~~~~~~~~~~i~i~S~SK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 346 (441)
...+. .+.++++.|+||.++.. +.++||+++++++ ++.+...+.....+.++.. +..++. +.++
T Consensus 175 ~~~l~--~~~divv~S~sK~l~G~~~~~~G~~~~~~~l--------~~~l~~~~~~~g~~~~~~~---a~~~l~--~~~~ 239 (376)
T PRK06460 175 QKPLE--LGADIVVHSASKFLAGHNDVIAGLAAGYGKL--------LNVIDQMRRTLGTSLDPHA---AYLTLR--GIKT 239 (376)
T ss_pred CChhh--cCCCEEEeecceeccCCCCceEEEEecCHHH--------HHHHHHHHHhcCCCCCHHH---HHHHHh--chhh
Confidence 11111 23459999999998522 3679999998876 4556554444333333322 333333 3567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 013521 347 LRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
++.+.++.+++++.+.+.|+++
T Consensus 240 l~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 240 LKIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 7888999999999999999987
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-22 Score=195.02 Aligned_cols=318 Identities=13% Similarity=0.107 Sum_probs=205.9
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhc----CCCC
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLL----GSNV 159 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~----~~gd 159 (441)
++.+.+.+++.+.+.... .....| .+..++.+.+.+++.+.++.+++++++++|+++++.. +..+. ++||
T Consensus 31 ~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~ 105 (371)
T PRK13520 31 EPHPIARKAHEMFLETNL--GDPGLF---PGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKP 105 (371)
T ss_pred CchHHHHHHHHHHHhcCC--CCcccC---ccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCc
Confidence 456777888888776421 111112 2334433444444444347777789999999999876 43333 3578
Q ss_pred EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccccCCCHHHH
Q 013521 160 TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTGHAATWQQL 236 (441)
Q Consensus 160 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~~~~~~~~ 236 (441)
+|++.+++|.++...++..| .+++.++.+.++.++++ +++ .+++++|++++++||||.+.| +
T Consensus 106 ~vl~~~~~h~s~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~---l 170 (371)
T PRK13520 106 NIVVPESAHFSFDKAADMLG------------VELRRAPLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDP---I 170 (371)
T ss_pred eEEecCcchHHHHHHHHHcC------------ceEEEecCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCC---H
Confidence 99999999999888888777 57888887643222221 222 256777787888999999999 8
Q ss_pred HHHHHHHHHcCcEEEEcccccccccC--CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc-ccccCCchhH
Q 013521 237 KKLVEFAKANGSIIVYDSAYAAYITD--PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE-LRYSNGYPVI 313 (441)
Q Consensus 237 ~~i~~~a~~~~~~ii~De~~~~~~~~--~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~-~~~~~~~~~~ 313 (441)
++|.++|+++|+++++|++|..+..+ ..+ ...... ..+...+..|.+|+. .+|.++|++++.++ ++
T Consensus 171 ~~I~~l~~~~g~~livD~a~~~~~~~~~~~~-~~~~~~-~~~vd~~~~s~~K~~-~a~~~~G~~~~~~~~~~-------- 239 (371)
T PRK13520 171 PELSKIALENGIFLHVDAAFGGFVIPFLDDP-PNFDFS-LPGVDSITIDPHKMG-LAPIPAGGILFRDESYL-------- 239 (371)
T ss_pred HHHHHHHHHcCCCEEEEecchhHHHHhhcCC-CCcccc-CCCCceEEECCcccc-CccCCceEEEEcCHHHH--------
Confidence 88899999999999999999865422 111 111111 123345666788854 57889998886544 32
Q ss_pred HHHHHHHhhh--------cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEc
Q 013521 314 KDFNRIVCTC--------FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQF 385 (441)
Q Consensus 314 ~~~~~~~~~~--------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 385 (441)
+.+....... ..+.+.....++.++++.-....+++++++..++++++.+.|++.|++...++..+++.+++
T Consensus 240 ~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~ 319 (371)
T PRK13520 240 DALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEPVLNIVAFDD 319 (371)
T ss_pred HhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCCCceEEEEec
Confidence 2221000000 00112233444445554322334577888999999999999998888733234566788887
Q ss_pred CCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 386 PGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 386 ~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
+ +..++.++|.++ ||.+.++. .++++|+|+. +++++++++++.|++++
T Consensus 320 ~--~~~~v~~~L~~~-gi~v~~~~-----~~~~iRis~~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 320 P--NPDEVREKLRER-GWRVSVTR-----CPEALRIVCMPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred C--CHHHHHHHHHHC-CceeccCC-----CCCEEEEEEECCCCHHHHHHHHHHHHHHh
Confidence 6 456676776655 99998753 2468999973 58999999999998753
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-23 Score=201.65 Aligned_cols=334 Identities=17% Similarity=0.165 Sum_probs=207.4
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHh---hccCCCC-CC--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAF---ALSTVKG-YK--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~---~~~~~~~-~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
.+.|+.+... ++|+.+.+++.+.+. .+.+... .. .+.......++|+.+|+++ +.++++|++|+|++++
T Consensus 4 ~iyld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~----g~~~~~v~~~~g~t~a 78 (404)
T PRK14012 4 PIYLDYSATT-PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLI----GADPREIVFTSGATES 78 (404)
T ss_pred eEEecCcCCC-CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHc----CcCcCeEEEeCCHHHH
Confidence 3667766654 577889999988775 2211000 00 1111124556778888775 8888999999999999
Q ss_pred HHH-HHHh----cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEE
Q 013521 148 ISR-LQML----LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIF 219 (441)
Q Consensus 148 l~~-l~~l----~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~ 219 (441)
+++ +..+ .++||+|+++.++|+++...+..+...| .+++.++.++++.++++ +++ .+++++++
T Consensus 79 l~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g---------~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~ 149 (404)
T PRK14012 79 DNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREG---------FEVTYLDPQSNGIIDLEKLEAAMRDDTILVS 149 (404)
T ss_pred HHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCC---------CEEEEEccCCCCcCCHHHHHHhcCCCCEEEE
Confidence 987 4443 3789999999999998866665542122 48888888754332222 222 36789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+++++||||.+++ +++|.++|+++|+++|+|++++. +..+..+... +..+++.|++|.+| |+ ++|+++
T Consensus 150 ~~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~---g~~~~~~~~~----~~D~~~~s~~K~~g-p~-g~G~l~ 217 (404)
T PRK14012 150 IMHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSV---GKVPIDLSKL----KVDLMSFSAHKIYG-PK-GIGALY 217 (404)
T ss_pred EECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhc---CCcccCcccC----CCCEEEEehhhccC-CC-ceEEEE
Confidence 9999999999998 78999999999999999999873 1112222222 23478889999887 54 699999
Q ss_pred eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCC---
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGG--- 375 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--- 375 (441)
++++......+.... ..........+.+.....+..+++... ........++.++.++++.+.|+++ ++.+...
T Consensus 218 ~~~~~~~~~~~~~~g-~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~ 295 (404)
T PRK14012 218 VRRKPRVRLEAQMHG-GGHERGMRSGTLPTHQIVGMGEAARIA-KEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQ 295 (404)
T ss_pred EecCCCCCCCceecC-CCccCCccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc
Confidence 887653211000000 000000011112222222222232210 1223556677788888888888876 5555421
Q ss_pred --CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCC-----------------CCCeEEEEe--ecCHHHHHHHH
Q 013521 376 --KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG-----------------GNEHIRVSA--FGHREYISEAC 434 (441)
Q Consensus 376 --~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~~~~iRls~--~~~~~~~~~~l 434 (441)
+...++|+.+. +..++... + +++.+.+|..|.+. ..+.||+++ ..+++++++++
T Consensus 296 ~~~~~~~~~~~~~--~~~~~~~~-l--~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~ 370 (404)
T PRK14012 296 RVPGNLNVSFNYV--EGESLIMA-L--KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAI 370 (404)
T ss_pred cCCCEEEEEEeCc--CHHHHHHh-C--CCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHH
Confidence 12234666653 23344444 3 37888888766432 147899997 35899999999
Q ss_pred HHHHhh
Q 013521 435 RRLKNF 440 (441)
Q Consensus 435 ~~l~~~ 440 (441)
+.|+++
T Consensus 371 ~~l~~~ 376 (404)
T PRK14012 371 ELVRKS 376 (404)
T ss_pred HHHHHH
Confidence 999875
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=192.43 Aligned_cols=280 Identities=16% Similarity=0.176 Sum_probs=186.1
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHH----hccc
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVI----VGQA 181 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~ 181 (441)
+..| +.+...+|++++|++. .++.|++++| ++++.. +..++++||+|++..|+|.++...+.. .|
T Consensus 45 y~ry-~~p~~~~Le~~lA~l~------~~~~v~~~sG-~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G-- 114 (366)
T PRK07582 45 YGRA-SNPTWRALEAALGELE------GAEALVFPSG-MAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLG-- 114 (366)
T ss_pred eECC-CCccHHHHHHHHHHHc------CCCEEEECCH-HHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCe--
Confidence 4455 5668899999999984 3445555555 568886 677899999999999999888765532 35
Q ss_pred cccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc
Q 013521 182 GKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT 261 (441)
Q Consensus 182 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~ 261 (441)
++++.++.+++.. ...+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....
T Consensus 115 ----------~~v~~v~~~~~~~-----~~~~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~~- 175 (366)
T PRK07582 115 ----------VTVREAPTAGMAE-----AALAGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATPL- 175 (366)
T ss_pred ----------EEEEEECCCChHH-----HhccCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCcc-
Confidence 5888888754311 12357899999999999998887 8999999999999999999986321
Q ss_pred CCCCCcccccCCCcceeEEEecCCcccC-CccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcC
Q 013521 262 DPSPRSIYEIPGAREVAIEISSFSKFAG-FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS 340 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~i~i~S~SK~~~-~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 340 (441)
...| + .+ +..+++.|+||.++ .+|+|+||++++++.+ .+.+...+......++++....+...++
T Consensus 176 ~~~p--~-~~----g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l-------~~~l~~~~~~~g~~~~~~~a~l~~r~l~ 241 (366)
T PRK07582 176 GQRP--L-EL----GADLVVASDTKALTGHSDLLLGYVAGRDPEL-------MAAVERWRLLAGAIPGPFEAWLAHRSLG 241 (366)
T ss_pred ccCc--h-hc----CCcEEEecccccccCCCCeeEEEEEcCcHHH-------HHHHHHHHHHhCCCCCHHHHHHHHhccc
Confidence 1112 1 12 12388999999884 3679999999864433 4555555555555566666554444443
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-ee-C----CC-----------CceEEEEEcCCCChHHHHHHHHHhcC
Q 013521 341 PDGFQALRTVIDYYKENAKIIVDAFQSL-GLK-VN-G----GK-----------NAPYVWVQFPGSSSWDVFAEILEKTH 402 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~-~----~~-----------~~~~~~~~~~~~~~~~~~~~ll~~~g 402 (441)
.+..+.++.+++...+.+.|+++ .+. +. + ++ .|..+.++++ + .+.+.+++++.+
T Consensus 242 -----tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~--~-~~~~~~~~~~l~ 313 (366)
T PRK07582 242 -----TLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA--D-AAAAERFVAASR 313 (366)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--C-HHHHHHHHHhCC
Confidence 23555577778999999999987 332 21 1 11 2446777775 2 344556666666
Q ss_pred eEEeCCCCcCC--------------CCCCeEEEEeec--CHHHHHHHHHHHH
Q 013521 403 ILTIPGSGFGP--------------GGNEHIRVSAFG--HREYISEACRRLK 438 (441)
Q Consensus 403 i~v~pg~~f~~--------------~~~~~iRls~~~--~~~~~~~~l~~l~ 438 (441)
+... +..++. ..++.||+|++- .++.++.+.++|.
T Consensus 314 ~~~~-~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~ 364 (366)
T PRK07582 314 LVVA-ATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALD 364 (366)
T ss_pred ccee-cccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 5443 222221 124689999854 3444555555554
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-22 Score=192.44 Aligned_cols=286 Identities=13% Similarity=0.130 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhc------CCCCEEEEeCCCchhhHhHHHHhccccccccccC
Q 013521 117 MALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLL------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189 (441)
Q Consensus 117 ~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~ 189 (441)
.++++.+|++ ++++++++++++|+++++.. +..+. ++||+|++++++|.++...++..|
T Consensus 62 ~~~~~~la~~----~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G---------- 127 (373)
T TIGR03812 62 EEVVGSLGNL----LHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLG---------- 127 (373)
T ss_pred HHHHHHHHHH----hCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcC----------
Confidence 4455555555 48888899999999998765 43332 467999999999999988888888
Q ss_pred ccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC--
Q 013521 190 KYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-- 262 (441)
Q Consensus 190 ~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~-- 262 (441)
.+++.++.+.+. ..++++ .+++..++++.|+||||.+.+ +++|.++|+++|+++|+|++|+.+...
T Consensus 128 --~~~~~v~~~~~~--~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~ 200 (373)
T TIGR03812 128 --LELRYAPLDEDY--TVDVKDVEDLIDDNTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFL 200 (373)
T ss_pred --CeEEEEeeCCCC--CcCHHHHHHHHhhCcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHH
Confidence 588888876432 233221 244544455568999999988 888899999999999999999855321
Q ss_pred CCCCcccccC-CCcceeEEEecCCcccCCccceeEEEEe-eccccccCCchhHHHHHHHHhhhc--------CCCcHHHH
Q 013521 263 PSPRSIYEIP-GAREVAIEISSFSKFAGFTGVRLGWTVV-PEELRYSNGYPVIKDFNRIVCTCF--------NGASNIVQ 332 (441)
Q Consensus 263 ~~~~~~~~~~-~~~~~~i~i~S~SK~~~~~G~r~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 332 (441)
........++ .......+..|.+| +++++.++|+++. +++++ +.+........ .+.+....
T Consensus 201 ~~~~~~~~~d~~~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~gt~~~~~~ 271 (373)
T TIGR03812 201 KKGYNPPPFDFSLPGVQSITIDPHK-MGLSPIPAGGILFRSKSYL--------KYLSVDAPYLTVKKQATITGTRSGASA 271 (373)
T ss_pred hcCCCCCCccccCCCCCEEEECccc-cCCCcCCceEEEEeCHHHH--------hhhcccCcccCCCCCcceEeechhHHH
Confidence 0000000010 00112245567889 5567888986664 44442 22210000000 11223444
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcC
Q 013521 333 AGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFG 412 (441)
Q Consensus 333 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 412 (441)
.++.+.++......+++..++..++++++.+.|+++|+....++..+++.+.+++ ..++.++|.+ +||.+.++.
T Consensus 272 ~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~--~~~v~~~L~~-~gi~v~~~~--- 345 (373)
T TIGR03812 272 AATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLNIVAFEVDD--PEEVRKKLRD-RGWYVSVTR--- 345 (373)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCCceEEEEEeCC--HHHHHHHHHH-CCceeccCC---
Confidence 4455555533334567888999999999999999887654333456778888763 3466666665 599997753
Q ss_pred CCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 413 PGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 413 ~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
.++++|+++. .++++++++++.|+++
T Consensus 346 --~~~~iRis~~~~~t~edid~l~~~L~~~ 373 (373)
T TIGR03812 346 --CPKALRIVVMPHVTREHIEEFLEDLKEI 373 (373)
T ss_pred --CCCEEEEEEECCCCHHHHHHHHHHHhhC
Confidence 3568999974 5899999999999863
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=202.08 Aligned_cols=320 Identities=15% Similarity=0.158 Sum_probs=203.9
Q ss_pred CCcHHHHHHHHHHHhhccCCCCC--CCCCCC--cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhc----
Q 013521 85 PIPDIITSAMAEHAFALSTVKGY--KGYGAE--QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLL---- 155 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~--~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~---- 155 (441)
++|+.+.+++.+.+......+.. ..++.. .-..++|+.+++++ ++++++|++|+|+++++++ +..+.
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~v~~~~g~t~a~~~~l~~l~~~~~ 84 (353)
T TIGR03235 9 PIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEAL----GADTEEVIFTSGATESNNLAILGLARAGE 84 (353)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCCHHHHHHHHHHHHHHhcc
Confidence 57788999999987542210111 111110 12456777787775 8888999999999999987 55554
Q ss_pred CCC-CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccccCC
Q 013521 156 GSN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTGHAA 231 (441)
Q Consensus 156 ~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~~~ 231 (441)
++| +.|++....|+++......+...| .+++.++.+.++.++++ +++ .++++++++++|+||||.++
T Consensus 85 ~~g~~~vi~~~~~~~s~~~~~~~~~~~G---------~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~ 155 (353)
T TIGR03235 85 QKGKKHIITSAIEHPAVLEPIRALERNG---------FTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQ 155 (353)
T ss_pred cCCCCeeeEcccccHHHHHHHHHHHhcC---------CEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceecc
Confidence 356 789888888887765554443222 48888888754333222 222 35789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCch
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYP 311 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~ 311 (441)
+ +++|+++|+++|+++|+|++++.... +..+.. .+..+++.|++|.+|.+| +|+++++++........
T Consensus 156 ~---~~~I~~l~~~~~~~~ivD~a~~~g~~---~~~~~~----~~~D~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~ 223 (353)
T TIGR03235 156 P---IREIAEVLEAHEAFFHVDAAQVVGKI---TVDLSA----DRIDLISCSGHKIYGPKG--IGALVIRKRGKPKAPLK 223 (353)
T ss_pred C---HHHHHHHHHHcCCEEEEEchhhcCCc---cccccc----cCCCEEEeehhhcCCCCc--eEEEEEccCcccccccC
Confidence 9 78999999999999999999873221 222211 234588889999887555 89999888753110000
Q ss_pred --hHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCC---ceEEEEEcC
Q 013521 312 --VIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKN---APYVWVQFP 386 (441)
Q Consensus 312 --~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~~~~ 386 (441)
.... .........+.+.....+..++++. .....++.+++++++++++++.|.+.|+++..++. ...+.+.++
T Consensus 224 ~~~~~~-~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~ 301 (353)
T TIGR03235 224 PIMFGG-GQERGLRPGTLPVHLIVGMGEAAEI-ARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSID 301 (353)
T ss_pred ceeeCC-CCcCccccCCCChHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeC
Confidence 0000 0000011122333333334444431 11345778899999999999999888888764332 234556666
Q ss_pred CCChHHHHHHHHHhcCeEEeCCCCcCCCC--CCeEEEEeecCHHHHHHH
Q 013521 387 GSSSWDVFAEILEKTHILTIPGSGFGPGG--NEHIRVSAFGHREYISEA 433 (441)
Q Consensus 387 ~~~~~~~~~~ll~~~gi~v~pg~~f~~~~--~~~iRls~~~~~~~~~~~ 433 (441)
+.+..++...| ++ +|.+.+|..|.... +.++|.+++.+++++..+
T Consensus 302 ~~~~~~v~~~L-~~-~i~v~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~ 348 (353)
T TIGR03235 302 GVNSEALIVNL-RA-DAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGA 348 (353)
T ss_pred CcCHHHHHHHH-hC-CeEEEchhhcCCCCCCCCHHHHHcCCCHHHhCcc
Confidence 65555555554 56 89999999986443 457888877666555443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=195.27 Aligned_cols=214 Identities=18% Similarity=0.263 Sum_probs=151.9
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH----HHHhccccccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT----SVIVGQAGKFLKE 187 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~ 187 (441)
.+-..++++.+|+++ +. +++++|+|+++|+.+ +..++++||+|+++.+.|++.... +...|
T Consensus 60 ~p~~~~le~~la~l~----g~--~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G-------- 125 (390)
T PRK08133 60 NPTVTMFQERLAALE----GA--EACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFG-------- 125 (390)
T ss_pred ChHHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcC--------
Confidence 334678889999885 43 578899999999987 677889999999999999876543 33455
Q ss_pred cCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCc
Q 013521 188 TGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS 267 (441)
Q Consensus 188 ~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~ 267 (441)
++++.++.++.+.+...+ .+++++|++++|+||||.+.+ +++|+++|+++|++||+|++|....... |
T Consensus 126 ----~~v~~vd~~d~~~l~~~i--~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~-p-- 193 (390)
T PRK08133 126 ----IETTFVDLTDLDAWRAAV--RPNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ-P-- 193 (390)
T ss_pred ----cEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC-c--
Confidence 588888775322222111 368999999999999999998 8899999999999999999987433211 2
Q ss_pred ccccCCCcceeEEEecCCcccCCcccee-EEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHH
Q 013521 268 IYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA 346 (441)
Q Consensus 268 ~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 346 (441)
+ .. +..+++.|+||.++.+|.++ ||++++++. ++.+...........++..+. .++. +.+.
T Consensus 194 l-~~----g~Divv~S~sK~~~g~g~~~GG~vv~~~~~--------~~~~~~~~~~~g~~~~~~~a~---~~l~--gl~t 255 (390)
T PRK08133 194 L-KL----GADVVIHSATKYLDGQGRVLGGAVVGSKEL--------MEEVFGFLRTAGPTLSPFNAW---VFLK--GLET 255 (390)
T ss_pred h-hh----CCcEEEeecceeecCCcceEeEEEEcCHHH--------HHHHHHHHHHhCCCCCHHHHH---HHHc--ccch
Confidence 1 11 22488999999998889888 566666665 244443334333344444433 2332 3345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CC
Q 013521 347 LRTVIDYYKENAKIIVDAFQSL-GL 370 (441)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~L~~~-g~ 370 (441)
+..+.+++.+++..+.+.|+++ ++
T Consensus 256 l~~R~~~~~~~a~~la~~L~~~p~v 280 (390)
T PRK08133 256 LSLRMEAHSANALALAEWLEAHPGV 280 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 5667778888999999999987 44
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=188.08 Aligned_cols=335 Identities=19% Similarity=0.210 Sum_probs=232.1
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhc-cCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFAL-STVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~-~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
|.|+.+.. .|+.+.+.++|...+... +++...+.|+. .....+.|+.||+.+ ++++++|++|+|+|++.++
T Consensus 3 iYlD~~AT-Tp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll----ga~~~eIiFTSG~TEsnNla 77 (386)
T COG1104 3 IYLDNAAT-TPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL----GADPEEIIFTSGATESNNLA 77 (386)
T ss_pred cccccccc-CCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHh----CCCCCeEEEecCCcHHHHHH
Confidence 45554443 356788999999988766 55566677753 345567788888876 9999999999999999997
Q ss_pred HHH--hc----CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEc
Q 013521 151 LQM--LL----GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFC 221 (441)
Q Consensus 151 l~~--l~----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~ 221 (441)
|.. .. +.|..|++..-.|+.+.+.++.+..+| .+|.++|++.++-.+++ +++ .+++.+|-+.
T Consensus 78 I~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g---------~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim 148 (386)
T COG1104 78 IKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQG---------FEVTYLPVDSNGLVDLEQLEEALRPDTILVSIM 148 (386)
T ss_pred HHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcC---------CeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEE
Confidence 655 22 247899999999999999999883333 49999999986544433 222 3678888888
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
..||-||++.| +++|.++|+++++++.+|.+..- +..|..+..+ ..++..-|-+|+.|..| +|.++.+
T Consensus 149 ~aNnE~G~IQp---I~ei~~i~k~~~i~fHvDAvQa~---Gkipi~~~~~----~vD~ls~SaHK~~GpkG--iGaLyv~ 216 (386)
T COG1104 149 HANNETGTIQP---IAEIGEICKERGILFHVDAVQAV---GKIPIDLEEL----GVDLLSFSAHKFGGPKG--IGALYVR 216 (386)
T ss_pred ecccCeeeccc---HHHHHHHHHHcCCeEEEehhhhc---Cceecccccc----CcceEEeehhhccCCCc--eEEEEEC
Confidence 88999999999 88999999999999999999872 2224444332 13477778899999777 8888875
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeeCCC---
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVNGGK--- 376 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~--- 376 (441)
+.........--.+-...++ .+.+.+...+...+++ ...+.++....++.+.++.+.+.|.+. ++.+.+..
T Consensus 217 ~~~~~~p~i~GGgQE~g~Rs---GTenv~~Ivg~~~A~~-~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~r 292 (386)
T COG1104 217 PGVRLEPLIHGGGQERGLRS---GTENVPGIVGFGKAAE-IAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPR 292 (386)
T ss_pred CCCccCceeccCcCCCCCCC---CCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccC
Confidence 54421000000000011112 2234444444444444 334556777888889999999999875 45554332
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCC-----------------CCCeEEEEee--cCHHHHHHHHHHH
Q 013521 377 NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG-----------------GNEHIRVSAF--GHREYISEACRRL 437 (441)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~~~~iRls~~--~~~~~~~~~l~~l 437 (441)
-.+.+.+.+++...+.+ ...|+.+||.+..|+.|... ..+.|||||+ +++++++.+++.|
T Consensus 293 lP~~~~~~f~gv~gE~l-l~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l 371 (386)
T COG1104 293 LPNILNFSFPGVEGESL-LLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEAL 371 (386)
T ss_pred CCCeEEEEeCCCcHHHH-HHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHH
Confidence 23457777887665555 44566679999999998532 1367999984 4899999999998
Q ss_pred Hhh
Q 013521 438 KNF 440 (441)
Q Consensus 438 ~~~ 440 (441)
.++
T Consensus 372 ~~~ 374 (386)
T COG1104 372 KEI 374 (386)
T ss_pred HHH
Confidence 875
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=194.24 Aligned_cols=220 Identities=17% Similarity=0.271 Sum_probs=155.1
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccc
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFL 185 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 185 (441)
+.+| +.+-..+|++++|++. + .+++++|+|+++++.+ +..++++||+|+++.|+|++....+......+.
T Consensus 45 Y~R~-~~p~~~~le~~lA~l~----g--~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~-- 115 (382)
T TIGR02080 45 YSRS-GNPTRDLLQQALAELE----G--GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC-- 115 (382)
T ss_pred ccCC-CCchHHHHHHHHHHHh----C--CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC--
Confidence 4456 4456788999999985 3 4789999999999998 677899999999999999976655544321111
Q ss_pred cccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC
Q 013521 186 KETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP 263 (441)
Q Consensus 186 ~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~ 263 (441)
.++..++.+ + ..++++ .+++|+|++++|+||||.+++ +++|+++|+++|+++|+|++|..+....
T Consensus 116 ------~~v~~~d~~---d-~~~l~~ai~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~ 182 (382)
T TIGR02080 116 ------FRVLFVDQG---D-EQALRAALAQKPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQN 182 (382)
T ss_pred ------eEEEEECCC---C-HHHHHHhcCcCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 245554321 1 111221 357899999999999999999 7788899999999999999998543321
Q ss_pred CCCcccccCCCcceeEEEecCCcccC-CccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC
Q 013521 264 SPRSIYEIPGAREVAIEISSFSKFAG-FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD 342 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~i~i~S~SK~~~-~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 342 (441)
+ + .+ + ..+++.|+||.++ .++++.|+++++++.+ .+.+...+.......+++....+. .
T Consensus 183 -p--l-~~-g---aDivv~S~sK~l~G~~~~~~G~i~~~~~~~-------~~~l~~~~~~~g~~~sp~~a~l~l-----r 242 (382)
T TIGR02080 183 -P--L-AL-G---ADLVLHSCTKYLNGHSDVIAGAVIAKDPQV-------AEELAWWANNLGVTGGAFDSYLTL-----R 242 (382)
T ss_pred -c--h-hh-C---CCEEEeecceeccCCCCceeEEEEeCCHHH-------HHHHHHHHHccCCCCCHHHHHHHH-----c
Confidence 2 2 12 1 1388999999885 4688999988755443 455555555555556666544332 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 343 GFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+.+.+..+.++.+++...+.+.|+++
T Consensus 243 ~l~tl~~R~~~~~~na~~~a~~L~~~ 268 (382)
T TIGR02080 243 GLRTLVARMRLQQRNAQAIVEYLQTQ 268 (382)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445666778888999999999987
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-23 Score=203.11 Aligned_cols=336 Identities=11% Similarity=0.108 Sum_probs=214.6
Q ss_pred CCCCeEEeCCCCCCC---CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDTTQ---PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~---~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..|.... ..++.+.+++.+.+.+. . ..+.+..+..+|+++|++++ +. .++|++++|+++
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~----~-~~~~~~~~~~~lae~l~~~~----~~-~~~v~~~~sGse 115 (423)
T TIGR00713 46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERG----T-SYGAPTEAEILLAKEIISRV----PS-VEMVRFVNSGTE 115 (423)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhC----C-cCCCCCHHHHHHHHHHHHhC----Cc-ccEEEEeCCHHH
Confidence 456789998776432 47899999999988752 1 11225568899999999985 22 368999999999
Q ss_pred HHHH-HH--HhcCCCCEEEEeCCCchhhHhHHHHhcccccc------ccccCc--cceeEEeecCCCCCccCCCCC----
Q 013521 147 DISR-LQ--MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKF------LKETGK--YRNIVYMNCRPENNFFPDLST---- 211 (441)
Q Consensus 147 al~~-l~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~------~~~~~~--~~~v~~v~~~~~~~~~~~~~~---- 211 (441)
|+.. +. .....+++|+...++|++....+......+.. .+.... ...+..++.. + ..++++
T Consensus 116 A~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d-~~~l~~~i~~ 191 (423)
T TIGR00713 116 ATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYN---D-LEALEEVFEE 191 (423)
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCC---C-HHHHHHHHHH
Confidence 9986 42 22345689999999999975433321111100 000000 0012222221 1 111111
Q ss_pred -CCCccEEEEc-CCCCccccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCccc
Q 013521 212 -TSRTDIIFFC-SPNNPTGHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFA 288 (441)
Q Consensus 212 -~~~~~~v~i~-~p~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (441)
..++++|++. .|+| +|.+++ ++.+++|.++|++||+++|+||+|..+..+... ......-.+| +.+|||.+
T Consensus 192 ~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~-~~~~~~~~pD----i~t~sK~l 265 (423)
T TIGR00713 192 YGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGG-AQEYFGVEPD----LTTLGKII 265 (423)
T ss_pred cCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcch-hHHHhCCCcc----hhhhhhhh
Confidence 1467788875 7788 798887 689999999999999999999999877443211 1111221234 34799999
Q ss_pred CCccceeEEEEeeccccccCCchhHHHHHH---HHhhhcCCCcHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHH
Q 013521 289 GFTGVRLGWTVVPEELRYSNGYPVIKDFNR---IVCTCFNGASNIVQAGGLACLSPDG-FQALRTVIDYYKENAKIIVDA 364 (441)
Q Consensus 289 ~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~ 364 (441)
+ +|+|+||++++++++ +.+.. .......+.+++.+.++.+.++... ....++.++..+..++.+.+.
T Consensus 266 ~-~G~pig~v~~~~~i~--------~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (423)
T TIGR00713 266 G-GGLPVGAFGGRREIM--------ERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEV 336 (423)
T ss_pred c-CCCceeeeeEHHHHH--------HhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 8 999999999998873 33331 1122344578899998888886211 124567777777777888888
Q ss_pred HHhCCCeee-CCCCceE-EEEEcCCC---------Ch---HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHH
Q 013521 365 FQSLGLKVN-GGKNAPY-VWVQFPGS---------SS---WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYI 430 (441)
Q Consensus 365 L~~~g~~~~-~~~~~~~-~~~~~~~~---------~~---~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~ 430 (441)
++++++... ...++++ +++..+.. +. ..+...+++ +||.+.++ .| +.+|++...+++++
T Consensus 337 ~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~-~~-----~~~~l~~~~t~~~i 409 (423)
T TIGR00713 337 LEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLD-KGVFLPPS-QF-----EACFLSAAHTEEDI 409 (423)
T ss_pred HHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHH-CCeEEecC-Cc-----cceeeECCCCHHHH
Confidence 887765542 2223332 44442211 11 135556665 59998754 22 35788877799999
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
++++++|.+++
T Consensus 410 ~~~~~~l~~~l 420 (423)
T TIGR00713 410 ENTIEAAEEVF 420 (423)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-22 Score=194.47 Aligned_cols=334 Identities=13% Similarity=0.106 Sum_probs=209.2
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|- ..+ ..+|.+.+++.+.+.+... ....|. .....+|.+.+++. .+ .+.+++++++++|
T Consensus 38 G~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~--~~~~~~-~~~~~~la~~l~~~----~~--~~~v~~~~sGseA 108 (406)
T PRK12381 38 GKEYIDFAGGIAVNALGHAHPALREALNEQASKFWH--TGNGYT-NEPVLRLAKKLIDA----TF--ADRVFFCNSGAEA 108 (406)
T ss_pred CCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhccc--ccCccC-CHHHHHHHHHHHhh----CC--CCeEEEcCCcHHH
Confidence 45688886652 112 2478999999998875321 111232 22234555555554 22 4799999999999
Q ss_pred HHHHHHhc---------CCCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCCCccCCCCC--CCCc
Q 013521 148 ISRLQMLL---------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPENNFFPDLST--TSRT 215 (441)
Q Consensus 148 l~~l~~l~---------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~ 215 (441)
+.....+. .++..|+..+.+|++........+....+.. .......+..++..+- .++++ .+++
T Consensus 109 ~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~l~~~l~~~~ 184 (406)
T PRK12381 109 NEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDL----NSASALIDDQT 184 (406)
T ss_pred HHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCH----HHHHHhccCCe
Confidence 88632221 2457899999999997654433332110000 0000001222222110 11111 2467
Q ss_pred cEEEEcCCCCccccCC--CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccc
Q 013521 216 DIIFFCSPNNPTGHAA--TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~--~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
++|++ +|.||+|-++ +.+.+++|.++|++||+++|+||+|..+...+.........-.+| +.||||.++ +|+
T Consensus 185 aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pD----i~t~sK~l~-gG~ 258 (406)
T PRK12381 185 CAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD----VLTTAKALG-GGF 258 (406)
T ss_pred eEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCC----EEEehhhhh-CCC
Confidence 67665 8999998765 799999999999999999999999987755543222112221234 359999998 999
Q ss_pred eeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC--Ce
Q 013521 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG--LK 371 (441)
Q Consensus 294 r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~ 371 (441)
|+||++++++++ +.+.........+.+++.+.++.+.++.. .-.+++++++++.+++.+.|++++ ..
T Consensus 259 ~ig~~~~~~~~~--------~~~~~~~~~~t~~~~pl~~aaa~a~l~~l---~~~~~~~~~~~~~~~l~~~L~~l~~~~~ 327 (406)
T PRK12381 259 PIGAMLTTEKCA--------SVMTVGTHGTTYGGNPLASAVAGKVLELI---NTPEMLNGVKQRHDWFVERLNTINARYG 327 (406)
T ss_pred ceEEEEEcHHHH--------hhcCCCCCCCCCCCCHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999998873 33432222334457888888888877521 124567888888889988888763 21
Q ss_pred --eeCCCCceEEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 372 --VNGGKNAPYVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 372 --~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
......|.++|+.++.. ....+... +.++||.+.+. +++.+|++. ..+++++++++++|.+++
T Consensus 328 ~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~-l~~~Gv~v~~~------g~~~lRl~p~~~~t~~~i~~~~~~l~~~l 397 (406)
T PRK12381 328 LFSEIRGLGLLIGCVLNAEYAGKAKQISQE-AAKAGVMVLIA------GPNVVRFAPALNISEEEITTGLDRFARAC 397 (406)
T ss_pred CEEEEecCeEEEEEEecCchhhHHHHHHHH-HHHCCcEEeeC------CCCEEEEeCCccCCHHHHHHHHHHHHHHH
Confidence 11223578889988632 22344444 55569999763 246899986 368999999999998763
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=193.00 Aligned_cols=317 Identities=16% Similarity=0.177 Sum_probs=201.5
Q ss_pred CCcHHHHHHHHHHHhhccCCCCC--CCCCC--CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh----c
Q 013521 85 PIPDIITSAMAEHAFALSTVKGY--KGYGA--EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML----L 155 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~--~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l----~ 155 (441)
+.|+.+.+++.+.+......+.. +.+.. ..-..++|+.+++++ +.++++|++|+|+++++++ +..+ .
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~~~~v~~t~~~t~a~~~~l~~~~~~~~ 85 (364)
T PLN02651 10 PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI----GADPKEIIFTSGATESNNLAIKGVMHFYK 85 (364)
T ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCCHHHHHHHHHHHHHHhcc
Confidence 57788999998877542110111 11111 112445566666664 8888999999999999876 4332 4
Q ss_pred CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccccCCC
Q 013521 156 GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 156 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~~~~ 232 (441)
++||+|++....|+++...+..+...| .+++.++.+.++.++++ +++ .++++++++++++||||.++|
T Consensus 86 ~~g~~vl~~~~~h~s~~~~~~~~~~~g---------~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~ 156 (364)
T PLN02651 86 DKKKHVITTQTEHKCVLDSCRHLQQEG---------FEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQP 156 (364)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHhcC---------CEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceeccc
Confidence 789999999989988766554433222 47888888654332221 221 367899999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchh
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPV 312 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~ 312 (441)
+++|.++|+++|+++++|.+++.... +..+..+ +..+++.|.+|++| ...+|+++++++.+....+..
T Consensus 157 ---l~~I~~~~~~~g~~~~vD~a~~~g~~---~~~~~~~----~~D~~~~s~hK~~g--p~G~g~l~v~~~~~~~l~p~~ 224 (364)
T PLN02651 157 ---VEEIGELCREKKVLFHTDAAQAVGKI---PVDVDDL----GVDLMSISGHKIYG--PKGVGALYVRRRPRVRLEPLM 224 (364)
T ss_pred ---HHHHHHHHHHcCCEEEEEcchhhCCc---ccCcccC----CCCEEEechhhhCC--CCceEEEEEcCCCCCCCCccc
Confidence 88999999999999999999983211 2222222 34599999999754 345999998887642211110
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCCCC-----ceEEEEEc
Q 013521 313 IKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-L-GLKVNGGKN-----APYVWVQF 385 (441)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~-----~~~~~~~~ 385 (441)
.. ..........+.+.....++.++++. -....++.+++.++..+++.+.|++ + |+++..+.. ...+.+.+
T Consensus 225 ~g-~~~~~~~~~GT~~~~~~~~l~~al~~-~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~ 302 (364)
T PLN02651 225 SG-GGQERGRRSGTENTPLVVGLGAACEL-AMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSF 302 (364)
T ss_pred cC-CCccCCccCCCccHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEe
Confidence 00 00000011223444444444444431 1123467778888888999998875 4 788776411 33666777
Q ss_pred CCCChHHHHHHHHHhcCeEEeCCCCcCCC-----------------CCCeEEEEe--ecCHHHHH
Q 013521 386 PGSSSWDVFAEILEKTHILTIPGSGFGPG-----------------GNEHIRVSA--FGHREYIS 431 (441)
Q Consensus 386 ~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~~~~iRls~--~~~~~~~~ 431 (441)
++.+..++...| ++ |.++.|+.+... ..+.||+|+ +++++|++
T Consensus 303 ~~~~~~~~~~~L-~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 303 AYVEGESLLMGL-KE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred CCCCHHHHHHHh-CC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 766777776665 33 999999876432 137899997 55788764
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=188.58 Aligned_cols=298 Identities=14% Similarity=0.127 Sum_probs=196.0
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCC----
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNV---- 159 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd---- 159 (441)
.+|+.+++++.++..+ |. +..++++++++++.+.++. +++++|+|+++++.+ +..++++||
T Consensus 24 ~~~~~v~~a~~~~~~~---------~~---~~~~~~~~~~~~~a~~~g~--~~~~~~~g~t~al~~al~al~~~Gd~~~~ 89 (363)
T TIGR01437 24 TVSDEVADAQKRGAQN---------YF---EIKELVNKTGEYIANLLGV--EDAVIVSSASAGIAQSVAAVITRGNRYLV 89 (363)
T ss_pred CCCHHHHHHHHHHHhc---------CC---CHHHHHHHHHHHHHHhhCC--CeEEEEcCHHHHHHHHHHHHhcCCCcchh
Confidence 3789999999998643 32 3456777777777665564 478999999999997 788888998
Q ss_pred -----------EEEEeCCCchhh----HhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEE-E
Q 013521 160 -----------TVAVQDPSFPAY----IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIF-F 220 (441)
Q Consensus 160 -----------~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~-i 220 (441)
+|+++.|.|..+ .......| .++++++.+ ...+++ +++ .+++++++ +
T Consensus 90 ~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g------------~~~v~v~~~--~~~d~~~le~ai~~~t~ai~~v 155 (363)
T TIGR01437 90 ENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGG------------GKVVEAGYA--NECSAEQLEAAITEKTAAILYI 155 (363)
T ss_pred hcccccccccceEEEECccchhcCCchHHHHHhcC------------CeEEEEcCC--CCCCHHHHHHhcChhceEEEEE
Confidence 999999888765 34555566 477777653 222221 222 46788766 5
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
++|+||+|.+.+ +++|+++|++||+++|+|++|+. + ..+...+ +..+++.|++|.+ +|++.|+++.
T Consensus 156 ~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~---~--~~~~~~~----g~D~~~~S~~K~l--~gp~~G~l~~ 221 (363)
T TIGR01437 156 KSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE---D--LQKYYRL----GADLVIYSGAKAI--EGPTSGLVLG 221 (363)
T ss_pred ecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC---c--hHHHHHc----CCCEEEEeCCccc--CCCceEEEEE
Confidence 688999999999 67899999999999999999972 1 1112222 1248889999987 5788999998
Q ss_pred eccccccCCchhHHHHHHHHhhh-----cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTC-----FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNG 374 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 374 (441)
+++++ +......... ....+..++.+++..+.+.+. ...+.+.++++.+.+.|++. |+.+..
T Consensus 222 ~~~~i--------~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~----~~~~~~~~~~~~l~~~L~~i~g~~~~~ 289 (363)
T TIGR01437 222 KKKYI--------EWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGK----ESGAEMVAKLTPFIEALNTLKGVSASI 289 (363)
T ss_pred cHHHH--------HHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCc----ccHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 77664 2221111100 011223455555555543232 23344455677899999987 887653
Q ss_pred CC--Cc-----eEEEEEcC--CCChHHHHHHHHHhcC--eEEeCCCCcCCCCCCeEEEEee-cCHHHHHHHHHHHHhhC
Q 013521 375 GK--NA-----PYVWVQFP--GSSSWDVFAEILEKTH--ILTIPGSGFGPGGNEHIRVSAF-GHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~--~~-----~~~~~~~~--~~~~~~~~~~ll~~~g--i~v~pg~~f~~~~~~~iRls~~-~~~~~~~~~l~~l~~~l 441 (441)
+. .+ +-+.++.. +.+..++.+.|. ++| |.+++ .| ...+.+|++.. .+++|++.++++|++++
T Consensus 290 ~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~-~~~~~I~~r~--~~--~~~~~~~l~~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 290 VQDEAGRDIARAEIRFDESELGMTAADVVQALR-QGEPAIYTRG--YK--ANEGIIEIDPRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred ecCCCCCcCceEEEEEeccCCCCCHHHHHHHHh-cCCCCEEEee--ee--ecCCeEEEEeecCCHHHHHHHHHHHHHhC
Confidence 21 11 11334442 445667766654 446 77665 22 23567999974 47999999999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-22 Score=191.41 Aligned_cols=220 Identities=14% Similarity=0.209 Sum_probs=157.3
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccc
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFL 185 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 185 (441)
+.+| +++....|++++|++. + .+++++++|+++++.+ +..++++||+|+++.|+|++....+......+.
T Consensus 46 Y~R~-~~pt~~~L~~~lA~l~----g--~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~g-- 116 (386)
T PRK08045 46 YSRR-GNPTRDVVQRALAELE----G--GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC-- 116 (386)
T ss_pred eeCC-CCccHHHHHHHHHHHh----C--CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCC--
Confidence 4456 4456789999999985 4 3479999999999998 577889999999999999975554443321111
Q ss_pred cccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC
Q 013521 186 KETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP 263 (441)
Q Consensus 186 ~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~ 263 (441)
.++..++.. + ..++++ .+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|......
T Consensus 117 ------i~v~~vd~~---d-~e~l~~~l~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~~- 182 (386)
T PRK08045 117 ------YRVLFVDQG---D-EQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPALQ- 182 (386)
T ss_pred ------eEEEEeCCC---C-HHHHHHhcccCCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC-
Confidence 245554321 1 111111 357899999999999999999 778888899999999999999854321
Q ss_pred CCCcccccCCCcceeEEEecCCcccC-CccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC
Q 013521 264 SPRSIYEIPGAREVAIEISSFSKFAG-FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD 342 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~i~i~S~SK~~~-~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 342 (441)
.++ .. ...+++.|+||.++ .++++.|+++++++.+ .+.+...........+++.+..+...++
T Consensus 183 --~pl-~~----gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~-------~~~l~~~~~~~g~~~~p~~~~l~~rgl~-- 246 (386)
T PRK08045 183 --NPL-AL----GADLVLHSCTKYLNGHSDVVAGVVIAKDPDV-------VTELAWWANNIGVTGGAFDSYLLLRGLR-- 246 (386)
T ss_pred --Cch-hh----CCCEEEeecceeccCCCCceeEEEEeCcHHH-------HHHHHHHHHhcCCCCCHHHHHHHHhhhc--
Confidence 222 11 11389999999885 4567899998754332 4555555555556677787766666554
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 343 GFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
.+..+.++..+++..+.+.|+++
T Consensus 247 ---tl~~R~~~~~~na~~la~~L~~~ 269 (386)
T PRK08045 247 ---TLVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHcC
Confidence 35777888899999999999987
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=190.18 Aligned_cols=332 Identities=14% Similarity=0.144 Sum_probs=219.0
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
+++++|+.+++ ++...|.+.++..+++++++...... -++...-..+|.++||+|+ + .++.+++.+|....+
T Consensus 102 r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~----g-~e~all~sSGy~AN~ 176 (476)
T PLN02955 102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK----K-KEDCLVCPTGFAANM 176 (476)
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH----C-CCcEEEECChHHHHH
Confidence 47899999985 67788999999999999887422211 1222334478999999996 4 356788888888877
Q ss_pred HHHHHh--------------cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC-C
Q 013521 149 SRLQML--------------LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT-S 213 (441)
Q Consensus 149 ~~l~~l--------------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-~ 213 (441)
.++..+ .+++|.|+.....|.+....++....++. .++..++.++-+.+...+... .
T Consensus 177 ~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~--------a~~~~f~HND~~~Le~~L~~~~~ 248 (476)
T PLN02955 177 AAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGN--------VEVFVYRHCDMYHLNSLLSSCKM 248 (476)
T ss_pred HHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCC--------ceEEEeCCCCHHHHHHHHHhCCC
Confidence 776554 25667899999999999988887743221 356666654322221112222 2
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc-cCCCcceeEEEecCCcccCCcc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE-IPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~~~~G 292 (441)
+.++|++..-.++.|.+.| +++|.++|++||+++|+||+|+.+..+.....+.. +.-.++++|+++||||.+|..|
T Consensus 249 ~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G 325 (476)
T PLN02955 249 KRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHG 325 (476)
T ss_pred CceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccC
Confidence 3344444344899999999 88888888999999999999998777654333333 2223577899999999998777
Q ss_pred ceeEEEEeeccccccCCchhHHHHHHHHhh-hcCC-CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFNRIVCT-CFNG-ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGL 370 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 370 (441)
||+++++++ ++.+...... .+.+ .+++...++.+.++.. ..-...+++++++.+++.+. .|+
T Consensus 326 ---Gfi~gs~~~--------~~~l~~~~~~~ifStalpp~~aaa~laal~l~--~~~~~~r~~L~~n~~~fr~~---~G~ 389 (476)
T PLN02955 326 ---GFIACSKKW--------KQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVA--RKEKWRRKAIWERVKEFKAL---SGV 389 (476)
T ss_pred ---ceeecHHHH--------HHHHHHhCCCCeecccccHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHh---cCC
Confidence 999998876 3444432222 2222 2233334444444311 01134567777888877773 255
Q ss_pred eeeCCCCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 371 KVNGGKNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.. .++.+.+.+... ...++.++|+++ ||.+.+...-. +.+...+||++ .+++++++++++.|.++
T Consensus 390 ~~----~sPI~pI~ig~~~~a~~~~~~L~~~-Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~ 458 (476)
T PLN02955 390 DI----SSPIISLVVGNQEKALKASRYLLKS-GFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSC 458 (476)
T ss_pred CC----CCCEEEEEeCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHH
Confidence 43 366777776532 334556666655 99998865433 34556899998 44899999999999764
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-22 Score=193.37 Aligned_cols=332 Identities=14% Similarity=0.108 Sum_probs=192.0
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccC-CCCCC--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALST-VKGYK--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~-~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
++..+|+....+ ++..+|.+.+++.+.+.+++. ..... .+ ......++++.|++++ +. +.+++++|+..
T Consensus 45 g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~-~~~~~~~l~~~la~~~----~~--~~~~~~sG~~a 117 (402)
T PRK07505 45 GHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRV-RSQILKDLEEALSELF----GA--SVLTFTSCSAA 117 (402)
T ss_pred CceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhh-hhHHHHHHHHHHHHHh----CC--CEEEECChHHH
Confidence 456889976543 336789999999999986531 01111 12 2234566677777664 54 66777777664
Q ss_pred HHHHHHH----hcCCCC-EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEE
Q 013521 147 DISRLQM----LLGSNV-TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIF 219 (441)
Q Consensus 147 al~~l~~----l~~~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~ 219 (441)
...++.. +..+|+ .|++.+..|++-..........+ .+++.+|..+-+ ++++ .+++++++
T Consensus 118 ~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~---------~~v~~~~~~d~~----~l~~~~~~~~~~~v 184 (402)
T PRK07505 118 HLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADE---------TEVETIDHNDLD----ALEDICKTNKTVAY 184 (402)
T ss_pred HHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcC---------CeEEEeCCCCHH----HHHHHHhcCCCEEE
Confidence 4434422 222232 36666666654221111110000 256666653211 1221 24568899
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCcccccCC-CcceeEEEecCCcccCCccceeE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYEIPG-AREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~--~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
+++|+||||.+++ +++|.++|++||+++|+||+|+...+... ......+.. .++++++++||||.+|.+| |
T Consensus 185 l~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G---g 258 (402)
T PRK07505 185 VADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG---G 258 (402)
T ss_pred EEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC---e
Confidence 9999999999999 78888999999999999999864333321 111222332 4678899999999999776 8
Q ss_pred EEEee-ccccccCCchhHHHHHHHHhhhcC--CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013521 297 WTVVP-EELRYSNGYPVIKDFNRIVCTCFN--GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN 373 (441)
Q Consensus 297 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 373 (441)
|++++ +++ .+.+......... +++.++..++.+.++-...+++.++.+.++++.+.+...+... .
T Consensus 259 ~~~~~~~~~--------~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~- 326 (402)
T PRK07505 259 VIMLGDAEQ--------IELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE---Q- 326 (402)
T ss_pred EEEeCCHHH--------HHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc---C-
Confidence 88754 344 3444432222111 2345666666666541111223444555555555443332211 1
Q ss_pred CCCCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 374 GGKNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 374 ~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
.....++.++.++.. ...++.+.|++ +||.+.++..+. +.+.++|||++. .+++++++++++|++++
T Consensus 327 ~g~~~~i~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l 397 (402)
T PRK07505 327 SGSFLPIRLIYIGDEDTAIKAAKQLLD-RGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEIL 397 (402)
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHH-CCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHH
Confidence 111222334444321 24566777765 599999974332 223478999974 58999999999998763
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=191.25 Aligned_cols=259 Identities=17% Similarity=0.180 Sum_probs=167.7
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccc
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFL 185 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 185 (441)
+.+| +++-..+|++.+|++. +. .+.|++.+| ++++.. +..++++||+|+++.|.|++....+.....+..
T Consensus 55 y~r~-~~pt~~~Le~~lA~l~----G~-~~al~~~sG-~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~g-- 125 (386)
T PRK06767 55 YSRL-GNPTVKLFEERMAVLE----GG-EEALAFGSG-MAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFM-- 125 (386)
T ss_pred ccCC-CCcchHHHHHHHHHHh----CC-CcEEEECCH-HHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcC--
Confidence 3345 4455789999999986 53 355656555 567776 677889999999999999887666554432111
Q ss_pred cccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC
Q 013521 186 KETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP 263 (441)
Q Consensus 186 ~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~ 263 (441)
+++..++..+. .++++ .+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|......
T Consensus 126 ------i~~~~~~~~d~----~~l~~~i~~~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~- 191 (386)
T PRK06767 126 ------ITHSFCDMETE----ADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQ- 191 (386)
T ss_pred ------eEEEEeCCCCH----HHHHHhhCcCceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccC-
Confidence 24444443211 11221 357899999999999999999 788888999999999999999742221
Q ss_pred CCCcccccCCCcceeEEEecCCcccCCcccee-EEEEeeccccccCCchhHHHH-HHHHhhhcCCCcHHHHHHHHHhcCC
Q 013521 264 SPRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYSNGYPVIKDF-NRIVCTCFNGASNIVQAGGLACLSP 341 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~l~~ 341 (441)
.++ .. +..+++.|+||.++.+|.|+ ||++++++.+ +.. ...........+++.+.++...+
T Consensus 192 --~pl-~~----g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i--------~~~~~~~~~~~g~~~~~~~a~l~~~~L-- 254 (386)
T PRK06767 192 --RPL-EL----GCDAVVHSATKYIGGHGDVVAGVTICKTRAL--------AEKIRPMRKDIGGIMAPFDAWLLLRGL-- 254 (386)
T ss_pred --Cch-hc----CCcEEEecCcceecCCCCceeEEEEeChHHH--------HHHHHHHHHHhCCCCCHHHHHHHHcCC--
Confidence 122 11 22488899999998788885 8999988764 232 22233233334555444333333
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhC-CCee-eCC----------CCceEEEEEcCCC--ChHHHHHHHHHhcCeEEeC
Q 013521 342 DGFQALRTVIDYYKENAKIIVDAFQSL-GLKV-NGG----------KNAPYVWVQFPGS--SSWDVFAEILEKTHILTIP 407 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~----------~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~p 407 (441)
+.+..+.++.+++.+.+.+.|+++ +++. .-| ..|..+.+++++. ....++.. ++..++.++-
T Consensus 255 ---~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~-l~~~~~~~s~ 330 (386)
T PRK06767 255 ---KTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFIND-LHFITIAVSL 330 (386)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHh-CCccEEecCC
Confidence 233556678899999999999987 6653 211 1344677777632 22344444 3455666665
Q ss_pred CC
Q 013521 408 GS 409 (441)
Q Consensus 408 g~ 409 (441)
|.
T Consensus 331 G~ 332 (386)
T PRK06767 331 GD 332 (386)
T ss_pred CC
Confidence 54
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=191.04 Aligned_cols=333 Identities=13% Similarity=0.105 Sum_probs=208.0
Q ss_pred CCCeEEeCCCCCCCC---CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQP---IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~---~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|-.... .+|.+.+++.+.+..... ....+ ......++.+.++++. + .+.+++++++++|
T Consensus 40 g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~l~~~~----~--~~~~~~~~SGs~A 110 (401)
T PRK00854 40 GNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTL--TSRAF-RNDQLAPLYEELAALT----G--SHKVLPMNSGAEA 110 (401)
T ss_pred CCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccc--ccccc-CCHHHHHHHHHHHhhC----C--CCEEEEeCCcHHH
Confidence 456788766643322 378899999999876432 11112 2334556666676653 3 3589999999999
Q ss_pred HHH-HHHhcC---------CC-CEEEEeCCCchhhHhHHHHhccccc----cccccCccceeEEeecCCCCCccCCCCCC
Q 013521 148 ISR-LQMLLG---------SN-VTVAVQDPSFPAYIDTSVIVGQAGK----FLKETGKYRNIVYMNCRPENNFFPDLSTT 212 (441)
Q Consensus 148 l~~-l~~l~~---------~g-d~Vlv~~p~y~~~~~~~~~~g~~~~----~~~~~~~~~~v~~v~~~~~~~~~~~~~~~ 212 (441)
+.. +..+.. +| ++|++..-+|++....+...+.... +.... ..+..++..+.+.+...+ .
T Consensus 111 ~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~le~~i--~ 185 (401)
T PRK00854 111 VETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFT---PGFRVVPFGDAEALEAAI--T 185 (401)
T ss_pred HHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCC---CCeEEeCCCCHHHHHHHh--C
Confidence 886 433321 23 6888888888775433333221110 00000 123344332111111111 2
Q ss_pred CCccEEEEcCCCCccccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 213 SRTDIIFFCSPNNPTGHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++++|++++|+||+|.+++ .+.+++|.++|++||+++|+||+|..+...+.........-.+|.+ + +||.++ .
T Consensus 186 ~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~--~--~~K~l~-g 260 (401)
T PRK00854 186 PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVT--L--IGKALS-G 260 (401)
T ss_pred CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEE--E--eccccc-C
Confidence 57899999999999999997 4569999999999999999999998665443211111111123432 2 479997 5
Q ss_pred c-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013521 292 G-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGL 370 (441)
Q Consensus 292 G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 370 (441)
| +|+||++++++++ +.+.........+.+++.+.++.+.|+... + ....+.++++.+++.+.|++++.
T Consensus 261 g~~~ig~v~~~~~~~--------~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~-~--~~~~~~~~~~~~~l~~~L~~~~~ 329 (401)
T PRK00854 261 GFYPVSAVLSNSEVL--------GVLKPGQHGSTFGGNPLACAVARAALKVLT-E--EGMIENAAEMGAYFLEGLRSIRS 329 (401)
T ss_pred CccCeEEEEEcHHHH--------hcccCCCCCCCCCcCHHHHHHHHHHHHHHH-H--cCHHHHHHHHHHHHHHHHHhhcc
Confidence 5 7999999998874 333222222334468888988888886211 1 33568888888999999987643
Q ss_pred ee---eCCCCceEEEEEc-CC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 371 KV---NGGKNAPYVWVQF-PG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 371 ~~---~~~~~~~~~~~~~-~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
.. ..+ .|.++.+.+ +. ....++.+.|+++ ||.+.+. +.+++|++. ..+++++++++++|++++
T Consensus 330 ~~~~~~~g-~g~~~~i~~~~~~~~~~~~~~~L~~~-GV~v~~~------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l 399 (401)
T PRK00854 330 NIVREVRG-RGLMLAVELEPEAGGARQYCEALKER-GLLAKDT------HDHTIRLAPPLVITREQVDWALEQIAKVL 399 (401)
T ss_pred CceEEEec-cceEEEEEEecCchhHHHHHHHHHHC-CeEEecC------CCCEEEEeCCcccCHHHHHHHHHHHHHHh
Confidence 21 222 355544444 32 2455677777765 9999752 246899995 568999999999998864
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-22 Score=193.59 Aligned_cols=337 Identities=11% Similarity=0.075 Sum_probs=199.5
Q ss_pred CCCeEEeCCCCCCCC---CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQP---IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~---~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|..... .+|.+.+++.+.+........ .+ ......++++.++++ .+ .+.+++++++++|
T Consensus 30 g~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~----~~--~~~~~~~~SGs~A 100 (400)
T PTZ00125 30 GKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSR--AF-YNDVLGLAEKYITDL----FG--YDKVLPMNSGAEA 100 (400)
T ss_pred CCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccc--cc-cCHHHHHHHHHHHhC----CC--CCEEEEeCCcHHH
Confidence 467888877643322 578899999998875431111 11 122334445555443 23 3578888888888
Q ss_pred HHH-HHHhc----------CCCCEEEEeCCCchhhHhHHHHhcccc-ccccccCccceeEEeecCCCCCccCCCCCCCCc
Q 013521 148 ISR-LQMLL----------GSNVTVAVQDPSFPAYIDTSVIVGQAG-KFLKETGKYRNIVYMNCRPENNFFPDLSTTSRT 215 (441)
Q Consensus 148 l~~-l~~l~----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 215 (441)
... +.... ..++.|++.+-+|++............ ...........+..++..+-+.+...+. .+++
T Consensus 101 ~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~~~ 179 (400)
T PTZ00125 101 GETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQ-DPNV 179 (400)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhC-CCCe
Confidence 876 43321 135788888888888643332222110 0000000000122332211111111111 2578
Q ss_pred cEEEEcCCCCccccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc-c
Q 013521 216 DIIFFCSPNNPTGHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG-V 293 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G-~ 293 (441)
++|++..++||||.+++ .+.+++|.++|++||+++|+||+|..+...+.+.........+| +.++||.++ +| +
T Consensus 180 ~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd----~~~~sK~l~-~g~~ 254 (400)
T PTZ00125 180 AAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPD----IVLLGKALS-GGLY 254 (400)
T ss_pred EEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCC----EEEEccccc-CCCc
Confidence 88888777999999986 55699999999999999999999987655443211111111233 234789998 56 5
Q ss_pred eeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC----C
Q 013521 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL----G 369 (441)
Q Consensus 294 r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g 369 (441)
|+||++++++++ +.+.........+.+++.+.++.+.++.... ....++.+++.+.+.+.|++. +
T Consensus 255 ~ig~v~~~~~~~--------~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~---~~~~~~~~~~~~~l~~~l~~l~~~~~ 323 (400)
T PTZ00125 255 PISAVLANDDVM--------LVIKPGEHGSTYGGNPLACAVAVEALEVLKE---EKLAENAQRLGEVFRDGLKELLKKSP 323 (400)
T ss_pred CcEEEEEcHHHH--------hhccCCCCCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999998874 3333222223345678888888776642111 122334444555555555442 3
Q ss_pred C-eeeCCCCceEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 370 L-KVNGGKNAPYVWVQFPG---SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 370 ~-~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
+ .... ..|.++|+.++. ....++...+++ +||.+.|+ +.++|||+. ..+++++++++++|.+++
T Consensus 324 ~~~~~~-~~g~~~~v~~~~~~~~~~~~~~~~l~~-~Gv~v~~~------~~~~lRi~~~~~~~~~~i~~~l~~l~~~l 393 (400)
T PTZ00125 324 WVKEIR-GKGLLNAIVFDHSDGVNAWDLCLKLKE-NGLLAKPT------HDNIIRFAPPLVITKEQLDQALEIIKKVL 393 (400)
T ss_pred CeEEEe-cccEEEEEEEccCcchHHHHHHHHHHH-CCeEEeec------CCCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 2 2223 367888888863 234566677665 59999885 257899994 568999999999998753
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=189.06 Aligned_cols=212 Identities=17% Similarity=0.160 Sum_probs=147.9
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccccccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLKET 188 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~ 188 (441)
+-...|++.+|++. +. ++++++++| ++++.+ +..++++||.|+++.|+|++....+ ...|
T Consensus 60 p~~~~Le~~lA~l~----g~-~~~v~~~sG-~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g--------- 124 (405)
T PRK08776 60 PTRDLLGEALAELE----GG-AGGVITATG-MGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGH--------- 124 (405)
T ss_pred hHHHHHHHHHHHHh----CC-CceEEEcCH-HHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcC---------
Confidence 34577888888875 43 456665555 789987 6778899999999999998844333 3334
Q ss_pred CccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc
Q 013521 189 GKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI 268 (441)
Q Consensus 189 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~ 268 (441)
.+++.++..+.+.+...+ .+++++|++++|+||||.+.+ +++|+++|+++|++||+|++|..... ..++
T Consensus 125 ---~~v~~v~~~d~~~l~~~i--~~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~---~~pl 193 (405)
T PRK08776 125 ---FALITADLTDPRSLADAL--AQSPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPAL---QKPL 193 (405)
T ss_pred ---cEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCccccc---CCcc
Confidence 366666653211111111 257899999999999999977 88999999999999999999974221 1222
Q ss_pred cccCCCcceeEEEecCCcccCCc-cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHH
Q 013521 269 YEIPGAREVAIEISSFSKFAGFT-GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQAL 347 (441)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 347 (441)
.+ +..+++.|.+|.++.+ ++..|+++++++.+ .+++...........+++.+.++. .+.+++
T Consensus 194 -~~----gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l-------~~~l~~~~~~~g~~~s~~~a~l~~-----~gl~tl 256 (405)
T PRK08776 194 -EF----GADLVLHSTTKYINGHSDVVGGAVVARDAEL-------HQQLVWWANALGLTGSPFDAFLTL-----RGLRTL 256 (405)
T ss_pred -cc----cCCEEEecCceeecCCCCceEEEEEeCCHHH-------HHHHHHHHHhcCCCCCHHHHHHHH-----hhhCcH
Confidence 12 1238899999999755 57789998865443 455554444444445666654433 344567
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 013521 348 RTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+.+.++.+++...+.+.|+++
T Consensus 257 ~~r~~~~~~na~~la~~L~~~ 277 (405)
T PRK08776 257 DARLRVHQENADAIAALLDGH 277 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 888899999999999999987
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-21 Score=185.07 Aligned_cols=246 Identities=18% Similarity=0.203 Sum_probs=167.7
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH----Hhcccccccc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAGKFLK 186 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~ 186 (441)
..+-..+|++.+|++. +. +..++++++++|+.. +..++++||+|+++.+.|.+....+. ..|
T Consensus 38 ~~p~~~~le~~la~l~----g~--~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g------- 104 (369)
T cd00614 38 GNPTVDALEKKLAALE----GG--EAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLG------- 104 (369)
T ss_pred CChhHHHHHHHHHHHH----CC--CCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcC-------
Confidence 4556788999999985 43 456677777889887 67788999999999999988665443 344
Q ss_pred ccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC
Q 013521 187 ETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR 266 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~ 266 (441)
.++..++.++.+.+...+ .+++++|++.+|+||||.+.+ +++|+++|++||+++|+|++|+..... .
T Consensus 105 -----~~~~~v~~~d~~~l~~~i--~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~---~ 171 (369)
T cd00614 105 -----IEVTFVDPDDPEALEAAI--KPETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQ---R 171 (369)
T ss_pred -----eEEEEeCCCCHHHHHHhc--CCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcC---C
Confidence 477777664211111111 257899999999999999998 889999999999999999999854321 1
Q ss_pred cccccCCCcceeEEEecCCcccCCcc-ceeEEEEeec-cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH
Q 013521 267 SIYEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPE-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF 344 (441)
Q Consensus 267 ~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 344 (441)
++ .. +.++++.|+||.++.+| ++.||+++++ ++ .+.+...........+++...++...++
T Consensus 172 ~~-~~----g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l--------~~~l~~~~~~~g~~~~p~~a~~~l~~l~---- 234 (369)
T cd00614 172 PL-EL----GADIVVHSATKYIGGHSDVIAGVVVGSGEAL--------IQRLRFLRLALGTILSPFDAWLLLRGLK---- 234 (369)
T ss_pred hh-hh----CCcEEEeccceeccCCCCceEEEEEeCcHHH--------HHHHHHHHHhhCCCCCHHHHHHHHcCCC----
Confidence 11 11 23489999999998555 7899999987 54 4555544444444566666554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCe-eeCC----------------CCceEEEEEcCCCChHHHHHHHHHhcCe
Q 013521 345 QALRTVIDYYKENAKIIVDAFQSL-GLK-VNGG----------------KNAPYVWVQFPGSSSWDVFAEILEKTHI 403 (441)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~ll~~~gi 403 (441)
.+..+.++..++.+.+.+.|+++ ++. +.-| ..|..+.+.+++ +.+.+..+++.-.+
T Consensus 235 -tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~--~~~~~~~f~~~l~~ 308 (369)
T cd00614 235 -TLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG--GLEAAKKFLNALKL 308 (369)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC--CHHHHHHHHHcCCc
Confidence 23556677888999999999987 342 2111 236678888863 23334455554344
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-21 Score=189.90 Aligned_cols=353 Identities=15% Similarity=0.120 Sum_probs=222.8
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC---CCcCcHHHHHHHHHHHhhhCC
Q 013521 56 PEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG---AEQGNMALRTAIADKFYKDMG 132 (441)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~---~~~g~~~lr~~ia~~l~~~~~ 132 (441)
.++.+.......+.......-++.|.++...|+.+.+++.+.-.- ..++.|+ ..+|..++++++++++.+.+|
T Consensus 52 ~~~~~~~~~l~~~n~~~~~~~~g~G~~~~~~~p~i~~~~~~~~~~----~~~tpYq~e~~sqG~lel~~~~~~~la~l~G 127 (481)
T PRK04366 52 LEVVRHYTRLSQKNYGVDTGFYPLGSCTMKYNPKINEKVARLPGF----AELHPLQPEETVQGALELMYELQEWLKEITG 127 (481)
T ss_pred HHHHHHHHHHHhcCCCCCcceecCcccCCCCCHHHHHHHHhCcch----hcCCCCCChhhhhHHHHHHHHHHHHHHHHhC
Confidence 334444444444443212234778888888888888888874211 3455674 456899999999999988777
Q ss_pred CCCCcEEEcCCcHHHHHHH--H--HhcCCCC----EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCC
Q 013521 133 IEGDEIFISDGAQSDISRL--Q--MLLGSNV----TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENN 204 (441)
Q Consensus 133 ~~~~~I~~t~G~~~al~~l--~--~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~ 204 (441)
.+...+..++|+++.+..+ . .+.++|| +|+++.|+|+.+...+...| .+++.++.+.++.
T Consensus 128 ~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G------------~~vv~v~~~~~~~ 195 (481)
T PRK04366 128 MDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAG------------FKVVEIPSNEDGL 195 (481)
T ss_pred CCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcC------------CEEEEeecCCCCC
Confidence 7755666677777665532 2 3357776 99999999999999888888 5888998864332
Q ss_pred ccCC-CCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEE
Q 013521 205 FFPD-LST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEI 281 (441)
Q Consensus 205 ~~~~-~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i 281 (441)
.+.+ ++. .+++++|++++|+ |||.. ..++++|+++|+++|+++++|.++..-.... .+... .+..+++
T Consensus 196 ~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~--~~~~~----~GaD~~~ 266 (481)
T PRK04366 196 VDLEALKAAVGEDTAALMLTNPN-TLGLF--ERNILEIAEIVHEAGGLLYYDGANLNAILGK--ARPGD----MGFDVVH 266 (481)
T ss_pred cCHHHHHhhcccCCeEEEEeCCC-Ccccc--chHHHHHHHHHHHcCCEEEEEecChhhhccc--CCccc----cCCCEEE
Confidence 2221 221 3578999999998 99964 3469999999999999999999985211111 11111 2345999
Q ss_pred ecCCcccCCc----cceeEEEEeeccccccCCchhH-------------H-HHHHHHhhhcCCCcHHHHHHHHHhcCCCc
Q 013521 282 SSFSKFAGFT----GVRLGWTVVPEELRYSNGYPVI-------------K-DFNRIVCTCFNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 282 ~S~SK~~~~~----G~r~G~l~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 343 (441)
+|.+|+++.| |..+|++.++++++...-..+. . .+++.+. .+.+.....++...+...+
T Consensus 267 ~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a---~t~~~l~~~~a~~~l~~~G 343 (481)
T PRK04366 267 LNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRA---FYGNFGVLVRAYAYIRSLG 343 (481)
T ss_pred EechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCccc---ccCchHHHHHHHHHHHHHH
Confidence 9999998744 4568898887765421100000 0 0001111 1122233344445554445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE--EEEEc-----CCCChHHHHHHHHHhcCeEEeCCCCcCCCCC
Q 013521 344 FQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY--VWVQF-----PGSSSWDVFAEILEKTHILTIPGSGFGPGGN 416 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 416 (441)
.+.+++..++...+.+++.+.|+++ +.+... +..+ +.+.. ++.+..++.++|.++ ||.+. +..|.....
T Consensus 344 ~~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~-~~~~p~~~~ 419 (481)
T PRK04366 344 AEGLREVSEDAVLNANYLKARLKDI-YDLPYD-RPCMHEFVLSGKKLKETGVRTLDIAKRLLDY-GFHPP-TIYFPLIVP 419 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh-CcccCC-CCeeEEEEEECccccccCCCHHHHHHHHHHC-CccCC-ccccccccC
Confidence 5566777777788899999999886 332211 1111 33332 234566777777654 98865 222211225
Q ss_pred CeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 417 EHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 417 ~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
+.+|+++ .+++++++++++.|+++
T Consensus 420 ~~l~is~~e~~t~edid~l~~~l~~i 445 (481)
T PRK04366 420 EALMIEPTETESKETLDAFIAAMKQI 445 (481)
T ss_pred CeEEEcccCCCCHHHHHHHHHHHHHH
Confidence 6899997 55899999999999765
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-21 Score=184.39 Aligned_cols=332 Identities=14% Similarity=0.170 Sum_probs=201.2
Q ss_pred CCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|.. .+ ..+|.+.+++.+.+.+... ...+ ...+....+|+.+.+.. ..+.+++++++++|
T Consensus 14 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~---~~~~----~~~~~~~~la~~l~~~~--~~~~v~f~~sGseA 84 (382)
T PLN00144 14 GKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAH---VSNV----YHTIPQVELAKRLVASS--FADRVFFCNSGTEA 84 (382)
T ss_pred CCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCC---cccc----ccCHHHHHHHHHHHhcC--CCCeEEEeCCcHHH
Confidence 456788766631 22 3578999999998875421 1111 11233445555554322 24699999999999
Q ss_pred HHH-HH--H-hcC------C------CCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCCCccCCCC
Q 013521 148 ISR-LQ--M-LLG------S------NVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPENNFFPDLS 210 (441)
Q Consensus 148 l~~-l~--~-l~~------~------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~~ 210 (441)
... +. . ... + ..+|+....+|++....+........+.. .......+..++..+-+.+. ...
T Consensus 85 ~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~~~ 163 (382)
T PLN00144 85 NEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAAR-KLI 163 (382)
T ss_pred HHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHH-Hhc
Confidence 885 42 1 111 1 25789999999997544443322110000 00000123333332111111 111
Q ss_pred CCCCccEEEEcCC-CCccccCCC--HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCc--ccccCCCcceeEEEecCC
Q 013521 211 TTSRTDIIFFCSP-NNPTGHAAT--WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS--IYEIPGAREVAIEISSFS 285 (441)
Q Consensus 211 ~~~~~~~v~i~~p-~NPtG~~~~--~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~--~~~~~~~~~~~i~i~S~S 285 (441)
...++++|++ .| +|| |.+++ .+.+++|.++|++||+++|+||+|..|...+.+.+ ...+ .+| +.|||
T Consensus 164 ~~~~~aavi~-eP~q~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~--~PD----i~t~s 235 (382)
T PLN00144 164 QKGKTAAVFV-EPVQGE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV--EPD----IMTLA 235 (382)
T ss_pred CCCCeEEEEE-ccccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCC--CCC----EEEec
Confidence 1245667665 55 899 55554 44599999999999999999999998766553322 2233 345 78899
Q ss_pred cccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhc---CCCcH-HHHHHHHHHHHHHHHHH
Q 013521 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL---SPDGF-QALRTVIDYYKENAKII 361 (441)
Q Consensus 286 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l---~~~~~-~~~~~~~~~~~~~~~~l 361 (441)
|.++ +|+|+||+++++++. +.+.........+.+++++.++.+.+ ++... ++++++.+.+ ++.+
T Consensus 236 K~l~-~G~pig~v~~~~~~~--------~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l---~~~l 303 (382)
T PLN00144 236 KPLA-GGLPIGAVLVTEKVA--------SAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYL---RELL 303 (382)
T ss_pred cccc-CCcceEEEEEcHHHH--------hccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHH---HHHH
Confidence 9998 999999999998874 33322223334557888888888444 43333 3444444444 3344
Q ss_pred HHHHHhCC-C-eeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHH
Q 013521 362 VDAFQSLG-L-KVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRL 437 (441)
Q Consensus 362 ~~~L~~~g-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l 437 (441)
.+.+.+++ + .+.. .|+++|+++. .....+...+++ +||.+.|+. ..+.||++.. .+++++++++++|
T Consensus 304 ~~~~~~~~~~~~vrg--~G~~~~l~l~-~~~~~~~~~~~~-~Gv~i~~~~-----~~~~lrl~p~~~~~~~~i~~~~~~l 374 (382)
T PLN00144 304 RRKLGGNPHVKEVRG--VGLLVGIQLD-VPAGPLVDACRD-SGLLVLTAG-----KGDVVRLVPPLVISEAELEQAVEIL 374 (382)
T ss_pred HHHHhhCCCceeeec--CceEEEEEec-CccHHHHHHHHH-CCeEEeecC-----CCCEEEEeCCCccCHHHHHHHHHHH
Confidence 44455542 2 2222 7899999994 234566666665 599999862 1478999963 4789999999999
Q ss_pred HhhC
Q 013521 438 KNFL 441 (441)
Q Consensus 438 ~~~l 441 (441)
.+++
T Consensus 375 ~~~l 378 (382)
T PLN00144 375 ADCL 378 (382)
T ss_pred HHHH
Confidence 8864
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=182.12 Aligned_cols=219 Identities=15% Similarity=0.209 Sum_probs=154.1
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHh-cccccc
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKF 184 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~ 184 (441)
+.+| +.+....|++++|++. + .+++++|+|+++++.+ +..++++||.|+++.|+|++....+... ...|
T Consensus 47 Y~R~-~npt~~~Le~~lA~le----g--~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~g-- 117 (388)
T PRK08861 47 YTRS-GNPNRGLLEQTLSELE----S--GKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGD-- 117 (388)
T ss_pred ccCC-CCchHHHHHHHHHHHh----C--CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCC--
Confidence 4455 3456889999999986 4 5899999999999998 6778899999999999998755544322 1111
Q ss_pred ccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC
Q 013521 185 LKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD 262 (441)
Q Consensus 185 ~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~ 262 (441)
.+++.++..+. .+++. .+++++|++++|+||||.+++ +++|+++|+++|+++|+|++|......
T Consensus 118 -------i~v~~vd~~d~----e~l~~~i~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~ 183 (388)
T PRK08861 118 -------FKVQFVDQSDA----AALDAALAKKPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ 183 (388)
T ss_pred -------eEEEEECCCCH----HHHHHhcCcCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC
Confidence 36666643211 11211 358999999999999999999 678888999999999999999854332
Q ss_pred CCCCcccccCCCcceeEEEecCCcccCCc-cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC
Q 013521 263 PSPRSIYEIPGAREVAIEISSFSKFAGFT-GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP 341 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~i~S~SK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 341 (441)
. |. .+ +-.+++.|++|.++-+ ++..|+++++++.+ .+++...+.......+++....+.
T Consensus 184 ~-pl---~~----GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~-------~~~~~~~~~~~G~~~~p~~a~l~~----- 243 (388)
T PRK08861 184 K-PL---EL----GADFVIHSTTKYINGHSDVIGGVLITKTKEH-------AEELAWWGNCIGATGTPFDSYMTL----- 243 (388)
T ss_pred C-Cc---cc----CCCEEEeecceeccCCCcceeEEEEecHHHH-------HHHHHHHHhccCCCCChHHHHHHH-----
Confidence 1 22 12 2238999999998743 46789998865432 344554455445555666533222
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 342 DGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
.+.+.+.-+.++..++...+.+.|+.+
T Consensus 244 rgl~Tl~lR~~~~~~~a~~~a~~L~~~ 270 (388)
T PRK08861 244 RGIRTLGARMRVHEESAQQILAYLQTQ 270 (388)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445667788888899999999987
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-21 Score=185.83 Aligned_cols=217 Identities=15% Similarity=0.160 Sum_probs=148.0
Q ss_pred CCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHH----hcccc
Q 013521 108 KGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVI----VGQAG 182 (441)
Q Consensus 108 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~ 182 (441)
..| +.+-..+|++.+|++. |.++. +++++++.++.. +..++++||+|+++.|.|+++...+.. .|
T Consensus 60 ~r~-~~p~~~~Le~~lA~l~----G~~~~--~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G--- 129 (398)
T PRK07504 60 SRY-SNPTVDMFEKRMCALE----GAEDA--RATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYG--- 129 (398)
T ss_pred ecC-CCchHHHHHHHHHHHh----CCCee--eEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcC---
Confidence 345 3446789999999986 65543 345566677765 667889999999999999986555432 34
Q ss_pred ccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 183 KFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 183 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
++++.++..+ ..++++ .+++|+|++++|+||||.+++ +++|.++|+++|+++|+|++|....
T Consensus 130 ---------~~v~~vd~~d----~e~l~~ai~~~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~ 193 (398)
T PRK07504 130 ---------IESTLVDGLD----LDNWEKAVRPNTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPL 193 (398)
T ss_pred ---------eEEEEECCCC----HHHHHHhcCcCceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccc
Confidence 4666664211 111221 368999999999999999999 8888999999999999999998543
Q ss_pred cCCCCCcccccCCCcceeEEEecCCcccCCccceeE-EEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhc
Q 013521 261 TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG-WTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL 339 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 339 (441)
... + + .. +.++++.|+||.++.+|.|+| +++++++.+ .+.+...........+++....+...
T Consensus 194 ~~~-~--~-~~----gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i-------~~~~~~~~~~~g~~~s~~~A~~~l~~- 257 (398)
T PRK07504 194 FQK-P--L-EL----GAHIVVYSATKHIDGQGRCLGGVVLSDKAWI-------EEHLQDYFRHTGPSLSPFNAWTLLKG- 257 (398)
T ss_pred cCC-c--h-hh----CCCEEEeeccccccCCccceEEEEEeCcHHH-------HHHHHHHHHHhCCCCCHHHHHHHHhc-
Confidence 321 1 1 22 234899999999988999996 566666553 22233333333444555554433333
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 013521 340 SPDGFQALRTVIDYYKENAKIIVDAFQSL-GL 370 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 370 (441)
.+.+..+.++.+++.+.+.+.|+++ ++
T Consensus 258 ----L~tl~~R~~~~~~na~~la~~L~~~p~v 285 (398)
T PRK07504 258 ----LETLPVRVRQQTESAAAIADFLAGHPKV 285 (398)
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3345666777778899999999886 44
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=181.91 Aligned_cols=216 Identities=20% Similarity=0.267 Sum_probs=150.8
Q ss_pred CCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHh----HHHHhcccc
Q 013521 108 KGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYID----TSVIVGQAG 182 (441)
Q Consensus 108 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~ 182 (441)
.+|+ .+-..++++.+|++. +. +++++++++++++.+ +..++++||+|+++.+.|.+... .+...|
T Consensus 49 ~r~~-~p~~~~le~~la~l~----g~--~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g--- 118 (380)
T TIGR01325 49 SRYA-NPTVAAFEERIAALE----GA--ERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFG--- 118 (380)
T ss_pred ecCC-CchHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhC---
Confidence 3453 445788999999985 44 577889999999987 67788999999999998866433 344455
Q ss_pred ccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC
Q 013521 183 KFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD 262 (441)
Q Consensus 183 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~ 262 (441)
.+++.++.++...+...+ .+++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|..+...
T Consensus 119 ---------~~v~~v~~~d~~~l~~~i--~~~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~ 184 (380)
T TIGR01325 119 ---------IEVSFVDPTDLNAWEAAV--KPNTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQ 184 (380)
T ss_pred ---------CEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 477777764211111111 357899999999999999998 889999999999999999999854332
Q ss_pred CCCCcccccCCCcceeEEEecCCcccCCcccee-EEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC
Q 013521 263 PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP 341 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 341 (441)
. | + .. +..+++.|+||.++.+|.++ |++++++++ .+.+...........++.... .++.
T Consensus 185 ~-p--l-~~----g~Divv~S~sK~l~g~g~~~gG~vv~~~~~--------~~~l~~~~~~~g~~~~p~~a~---~~l~- 244 (380)
T TIGR01325 185 Q-P--L-KL----GADVVVYSATKHIDGQGRVMGGVIAGSEEL--------MAEVAVYLRHTGPAMSPFNAW---VLLK- 244 (380)
T ss_pred C-c--h-hh----CCCEEEeeccceecCCCCeEEEEEEeCHHH--------HHHHHHHHHhhCCCCCHHHHH---HHHh-
Confidence 1 2 2 12 22488889999998778776 778777765 344554443333334444432 2332
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 342 DGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+.+.+..+.++..++++.+.+.|+++
T Consensus 245 -~l~tl~~r~~~~~~~a~~la~~L~~~ 270 (380)
T TIGR01325 245 -GLETLSLRMQKQFDSALAIAEWLQAQ 270 (380)
T ss_pred -ccCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 23344666778888899999999987
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=183.80 Aligned_cols=213 Identities=16% Similarity=0.185 Sum_probs=148.8
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH----Hhcccccccc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAGKFLK 186 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~ 186 (441)
+.+-..++++.+|++. |. +..++++++++|+.+ +..++++||+|+++.|+|++....+. ..|
T Consensus 62 ~~p~~~~le~~lA~l~----g~--~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~G------- 128 (398)
T PRK08249 62 TNPTVQAFEEKVRILE----GA--EAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMG------- 128 (398)
T ss_pred CChHHHHHHHHHHHHh----CC--CeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCC-------
Confidence 3456788999999986 43 445666666788887 67788999999999999998654443 344
Q ss_pred ccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC
Q 013521 187 ETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR 266 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~ 266 (441)
++++.++..+.+.+...+ .+++++|++++|+||||.+++ +++|+++|+++|+++|+|++|..+....
T Consensus 129 -----i~v~~vd~~d~e~l~~~i--~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~--- 195 (398)
T PRK08249 129 -----VDVTLCETGDHEQIEAEI--AKGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN--- 195 (398)
T ss_pred -----eEEEEcCCCCHHHHHHhc--CCCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC---
Confidence 466666542111111111 357899999999999999999 7789999999999999999998543321
Q ss_pred cccccCCCcceeEEEecCCcccCCcccee-EEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 267 SIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 267 ~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
++ .. +..+++.|+||.++.+|.++ ||+++++++ .+.+...+.......+++.+..+.+-+ +
T Consensus 196 ~l-~~----~~Divv~S~sK~l~g~~~~~gG~vv~~~~l--------~~~l~~~~~~~g~~~s~~~a~l~l~~l-----~ 257 (398)
T PRK08249 196 PL-AL----GADLVIHSATKFLSGHADALGGVVCGSKEL--------MEQVYHYREINGATMDPMSAYLILRGM-----K 257 (398)
T ss_pred ch-hh----CCCEEeccCceecCCCCCceEEEEECCHHH--------HHHHHHHHHhcCCCCCHHHHHHHHhCc-----c
Confidence 12 11 12378899999998667776 677666655 455555555455556666655444333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
.+..+.++.+++++.+.+.|+++
T Consensus 258 tL~~R~~~~~~na~~la~~L~~~ 280 (398)
T PRK08249 258 TLKLRVRQQQESAMALAKYLQTH 280 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566677788899999999986
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=183.49 Aligned_cols=323 Identities=15% Similarity=0.144 Sum_probs=193.0
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCC-----CCCCCC----CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEc
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTV-----KGYKGY----GAEQGNMALRTAIADKFYKDMGIEGDEIFIS 141 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~-----~~~~~Y----~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t 141 (441)
.++++|+.+++ ++..++.+.+++.+++..+... .+..+. +...-..++++.+|+++ +.+ +.++++
T Consensus 4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~----~~~-~~l~~~ 78 (370)
T PRK05937 4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFH----GAP-EAFIVP 78 (370)
T ss_pred CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHh----CCC-eEEEEC
Confidence 35899999995 6778888888888888776310 111111 12345677888888886 553 458889
Q ss_pred CCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC----CCCccE
Q 013521 142 DGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST----TSRTDI 217 (441)
Q Consensus 142 ~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~----~~~~~~ 217 (441)
+|++..+.++..+.++||.|++..-.|.+....++.... ..+.++..+-+.+...+.. .+++.+
T Consensus 79 sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~------------~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 146 (370)
T PRK05937 79 SGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISG------------WHQSFRHNDLDHLESLLESCRQRSFGRIF 146 (370)
T ss_pred ChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCC------------ceEEecCCCHHHHHHHHHhhhccCCCcEE
Confidence 988766655555567889988888888888777766531 1222222111111111111 123556
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
|++++++|+||.+.| +++|.++|+++|+++++||+|+...............+..+..+.+.||||.+|..| .|
T Consensus 147 v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G--~~- 220 (370)
T PRK05937 147 IFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMG--AA- 220 (370)
T ss_pred EEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCc--eE-
Confidence 677899999999999 889999999999999999999853333211111111112233366899999998667 33
Q ss_pred EEeeccccccCCchhHHHHHHH-Hhhhc-CCCcHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 013521 298 TVVPEELRYSNGYPVIKDFNRI-VCTCF-NGASNIVQAGGLACL---SPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV 372 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~a~~~~l---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 372 (441)
++..++.. ..+... ....+ .+.+++...++.+++ .+.+ +..++++++.++++.+.|+..+
T Consensus 221 vl~~~~~~--------~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~----~~~~~~l~~l~~~l~~~l~~~~--- 285 (370)
T PRK05937 221 LLSSSEVK--------QDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEG----ELARKQLFRLKEYFAQKFSSAA--- 285 (370)
T ss_pred EEcCHHHH--------HHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHhcCCCC---
Confidence 33434331 222211 11111 123444444333333 2222 3345677777777777765421
Q ss_pred eCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 373 NGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+....+.+++....++... |+++||.+.... ....++||+++ .++++|++++++.|+++
T Consensus 286 ----~~~~~~i~~~~~~~~~~~~~-L~~~gi~v~~~~---~~~~~~iRis~~~~~t~edid~l~~~L~~~ 347 (370)
T PRK05937 286 ----PGCVQPIFLPGISEQELYSK-LVETGIRVGVVC---FPTGPFLRVNLHAFNTEDEVDILVSVLATY 347 (370)
T ss_pred ----CCCEEEEEeCChhHHHHHHH-HHHCCeeEEeeC---CCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 11122244454344445455 455699886422 22346899997 46899999999999875
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=182.38 Aligned_cols=218 Identities=17% Similarity=0.177 Sum_probs=150.2
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH----HHHhccc
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT----SVIVGQA 181 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~ 181 (441)
+.+| +++...+|++.+|++. + .+++++++|+++|+.+ +..++++||+|+++.|+|.++... +...|
T Consensus 59 Y~r~-~~pt~~~Le~~lA~l~----g--~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~G-- 129 (394)
T PRK07050 59 YGLH-ATPTSLALAQRLAEIE----G--GRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFG-- 129 (394)
T ss_pred cCCC-CCHHHHHHHHHHHHHh----C--CCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcC--
Confidence 4455 4456688888888875 4 4699999999999997 677899999999999999987653 34445
Q ss_pred cccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc
Q 013521 182 GKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT 261 (441)
Q Consensus 182 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~ 261 (441)
++++.++..+...+.. . ..+++|+|++++|+||+|. ..++++|+++|+++|+++|+|++|.....
T Consensus 130 ----------i~v~~vd~~~~~~l~~-~-i~~~tklV~le~p~Np~~~---~~di~~I~~ia~~~gi~livD~a~a~~~~ 194 (394)
T PRK07050 130 ----------ITVRFYDPLIGAGIAD-L-IQPNTRLIWLEAPGSVTME---VPDVPAITAAARARGVVTAIDNTYSAGLA 194 (394)
T ss_pred ----------eEEEEECCCCHHHHHH-h-cCCCCeEEEEECCCCCCcc---HhhHHHHHHHHHHcCCEEEEECCcccccc
Confidence 4777776432211111 1 1368999999999999974 55699999999999999999999974221
Q ss_pred CCCCCcccccCCCcceeEEEecCCcccCC-ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcC
Q 013521 262 DPSPRSIYEIPGAREVAIEISSFSKFAGF-TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS 340 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~i~i~S~SK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 340 (441)
...+. .+.++++.|+||.++. .+.+.|++++.++.+ .+++...+.....+.+++....+..-
T Consensus 195 ------~~~l~--~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~-------~~~~~~~~~~~G~~~~~~~a~l~lr~-- 257 (394)
T PRK07050 195 ------FKPFE--HGVDISVQALTKYQSGGSDVLMGATITADAEL-------HAKLKLARMRLGIGVSADDCSLVLRG-- 257 (394)
T ss_pred ------cCHHH--cCCeEEEEECCceecCCCCeeEEEEEECCHHH-------HHHHHHHHHhcCCCCCHHHHHHHHcC--
Confidence 11111 1235899999999961 334589888755433 45555555544555666554333322
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 341 PDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
.+.+..+.++..++...+.+.|+++
T Consensus 258 ---l~tl~~Rl~~~~~~a~~la~~L~~~ 282 (394)
T PRK07050 258 ---LPSLQVRLAAHDRSALEVAEWLKAR 282 (394)
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 2334556677777778888888876
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=182.11 Aligned_cols=323 Identities=19% Similarity=0.211 Sum_probs=211.8
Q ss_pred CCcHHHHHHHHHHHhhccCCC--CCCCCCC--CcCcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHHHHHH-HHHh---c
Q 013521 85 PIPDIITSAMAEHAFALSTVK--GYKGYGA--EQGNMALRTAIADKFYKDMGIEG-DEIFISDGAQSDISR-LQML---L 155 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~--~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~al~~-l~~l---~ 155 (441)
+.|+.+.+++.+.+......+ +..++.. ..-..+.|+.+++++ ++++ ++|++++|++.+++. +..+ +
T Consensus 10 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~l----g~~~~~~v~~~~~~t~a~~~~~~~l~~~~ 85 (371)
T PF00266_consen 10 PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLL----GAPPDEEVVFTSNGTEALNAVASSLLNPL 85 (371)
T ss_dssp B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHH----TSSTTEEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhc----CCccccccccccccchhhhhhhhcccccc
Confidence 678999999999987654322 1222211 223356677777776 8888 899999999999998 5666 6
Q ss_pred CCCCEEEEeCCCchhhHhHHHHhc-cccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccccCC
Q 013521 156 GSNVTVAVQDPSFPAYIDTSVIVG-QAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTGHAA 231 (441)
Q Consensus 156 ~~gd~Vlv~~p~y~~~~~~~~~~g-~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~~~ 231 (441)
++||+|++..-.|++....+.... +.| .++..++.+.++..+++ +++ .++++++.+++.+|-||..+
T Consensus 86 ~~g~~vl~~~~~~~s~~~~~~~~~~~~g---------~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~ 156 (371)
T PF00266_consen 86 KPGDEVLVTSNEHPSNRYPWEEIAKRKG---------AEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRN 156 (371)
T ss_dssp TTTCEEEEEESSHHHHHHHHHHHHHHTT---------EEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBS
T ss_pred ccccccccccccccccccccccccccch---------hhhccccccccchhhhhhhhhhhccccceEEeecccccccEEe
Confidence 999999999999999774444332 112 58888888765433321 111 38999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccC---
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN--- 308 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~--- 308 (441)
| +++|.++|+++|+++++|.+++-... +..+.. .+.++++.|..|.+|.+ .+|+++++++.+...
T Consensus 157 p---i~~I~~~~~~~~~~~~vD~~~~~g~~---~id~~~----~~~D~~~~s~~Kl~gp~--G~g~l~v~~~~~~~~~p~ 224 (371)
T PF00266_consen 157 P---IEEIAKLAHEYGALLVVDAAQSAGCV---PIDLDE----LGADFLVFSSHKLGGPP--GLGFLYVRPEAIERLRPA 224 (371)
T ss_dssp S---HHHHHHHHHHTTSEEEEE-TTTTTTS---S--TTT----TTESEEEEESTSTTSSS--TEEEEEEEHHHHHHHHTS
T ss_pred e---eceehhhhhccCCceeEechhccccc---cccccc----cccceeeecccccCCCC--chhhheehhhhhhccccc
Confidence 9 88999999999999999999883221 222222 24458999999955444 489999998764210
Q ss_pred --CchhHHH--HHHH--Hh----hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCC--
Q 013521 309 --GYPVIKD--FNRI--VC----TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGG-- 375 (441)
Q Consensus 309 --~~~~~~~--~~~~--~~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-- 375 (441)
....... .... .. ....+.+.+...+...+++......+++.+++..+..+++.+.|+++ ++.+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 304 (371)
T PF00266_consen 225 KPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDD 304 (371)
T ss_dssp SSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSC
T ss_pred cccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecc
Confidence 0000000 0100 00 01113444444444444432212346778888889999999999988 5566432
Q ss_pred --CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC------CCCCeEEEEe--ecCHHHHHHH
Q 013521 376 --KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP------GGNEHIRVSA--FGHREYISEA 433 (441)
Q Consensus 376 --~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~iRls~--~~~~~~~~~~ 433 (441)
..+..+.+.+++.+..++.+.|.++ ||.+..|..+.. ...+.||+|+ +++.+|++++
T Consensus 305 ~~~~~~i~~~~~~~~~~~~~~~~L~~~-~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 305 EPRRPSIVSFNLPGSDADDVVKYLEER-GIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp GGBGTTEEEEEETTSSHHHHHHHHHHH-TEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred cccccceEEEeecCCCHHHHHHHHhhc-CEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 2355677888877777777776666 999999876540 1238999996 5689998864
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-20 Score=180.19 Aligned_cols=217 Identities=17% Similarity=0.167 Sum_probs=145.5
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHH-hccccccccccC
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVI-VGQAGKFLKETG 189 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~ 189 (441)
+.+...+|++++|++. +.+ ..+++++ +++|+.+ +..++++||+|+++.|+|++....+.. +...|
T Consensus 59 ~~p~~~~Le~~lA~~~----g~~-~~i~~~s-G~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~g------- 125 (388)
T PRK07811 59 GNPTRTALEEQLAALE----GGA-YGRAFSS-GMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWG------- 125 (388)
T ss_pred CCccHHHHHHHHHHHh----CCC-ceEEeCC-HHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCC-------
Confidence 4567899999999996 443 3455554 5788887 677889999999999999875544433 22112
Q ss_pred ccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc
Q 013521 190 KYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY 269 (441)
Q Consensus 190 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~ 269 (441)
++++.++..+.+.+...+ .+++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+..... .++.
T Consensus 126 --i~~~~~d~~d~e~l~~~i--~~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~---~p~~ 195 (388)
T PRK07811 126 --VEYTPVDLSDLDAVRAAI--TPRTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ---QPLA 195 (388)
T ss_pred --eEEEEeCCCCHHHHHHhc--CcCCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC---Cchh
Confidence 366666542111111111 357999999999999998877 889999999999999999999854322 1221
Q ss_pred ccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 270 EIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 270 ~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
. +..+++.|+||.++.+| .+.||++++++.+ .+.+...+.......++.....+...+ +.+.
T Consensus 196 -~----gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l-------~~~~~~~~~~~g~~~s~~~a~l~~~~L-----~tl~ 258 (388)
T PRK07811 196 -L----GADVVVHSTTKYIGGHSDVVGGALVTNDEEL-------DEAFAFLQNGAGAVPGPFDAYLTLRGL-----KTLA 258 (388)
T ss_pred -h----CCcEEEecCceeecCCCCcEEEEEEECCHHH-------HHHHHHHHHhcCCCCCHHHHHHHHhcc-----CcHH
Confidence 1 22399999999998544 5689999876543 344444433333334444433233333 2346
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 013521 349 TVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~ 368 (441)
.+.++.+++...+.+.|+++
T Consensus 259 ~R~~~~~~na~~la~~L~~~ 278 (388)
T PRK07811 259 VRMDRHSENAEAVAEFLAGH 278 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 66677788899999999887
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-20 Score=179.33 Aligned_cols=218 Identities=18% Similarity=0.201 Sum_probs=151.0
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchh----hHhHHHHhccc
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPA----YIDTSVIVGQA 181 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~ 181 (441)
+..|+ .+...+|++.+|++. +. ++.+++++++.++.. +..++++||+|+++...|.+ +...+...|
T Consensus 64 Y~r~~-~p~~~~le~~lA~l~----g~--~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G-- 134 (403)
T PRK07810 64 YSRYG-NPTVSMFEERLRLIE----GA--EACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWG-- 134 (403)
T ss_pred eeCCC-CchHHHHHHHHHHHh----CC--CcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcC--
Confidence 44554 445789999999985 43 366666666677765 67788999999998866644 344455556
Q ss_pred cccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc
Q 013521 182 GKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT 261 (441)
Q Consensus 182 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~ 261 (441)
++++.++..+.+.+...+ .+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|.....
T Consensus 135 ----------~~v~~vd~~d~~~l~~ai--~~~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~ 199 (403)
T PRK07810 135 ----------VETVFVDGEDLSQWEEAL--SVPTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLL 199 (403)
T ss_pred ----------cEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCcccc
Confidence 578887653211111111 367899999999999999998 88999999999999999999985433
Q ss_pred CCCCCcccccCCCcceeEEEecCCcccCCcccee-EEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcC
Q 013521 262 DPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS 340 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 340 (441)
.. + + .. +.++++.|++|.++..|.++ |+++++++.+ .+.+...........+++.+..++..|+
T Consensus 200 ~~-~--~-~~----gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~-------~~~l~~~~~~~g~~~s~~~a~l~l~~L~ 264 (403)
T PRK07810 200 QR-G--L-PL----GADVVVYSGTKHIDGQGRVLGGAILGDREYI-------DGPVQKLMRHTGPALSAFNAWVLLKGLE 264 (403)
T ss_pred CC-h--h-hc----CCcEEEccCCceecCCcCceeEEEEeChHHH-------HHHHHHHHHHhCCCCCHHHHHHHHhccC
Confidence 21 2 1 11 23488999999998778887 8888887654 2234433334444567776655554443
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 341 PDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
.+..+.++.+++...+.+.|+++
T Consensus 265 -----tl~~R~~~~~~~a~~~a~~L~~~ 287 (403)
T PRK07810 265 -----TLALRVRHSNASALRIAEFLEGH 287 (403)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHhcC
Confidence 34666777788888888899877
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=181.37 Aligned_cols=212 Identities=17% Similarity=0.197 Sum_probs=144.1
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH----HHHhccccccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT----SVIVGQAGKFLKE 187 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~ 187 (441)
.+-..+|++.+|++. +.+ ..++++++++++.+ +..++++||+|+++.|.|...... +...|
T Consensus 64 ~p~~~~le~~lA~l~----g~~--~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G-------- 129 (403)
T PRK07503 64 NPTLALLEQRMASLE----GGE--AAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFG-------- 129 (403)
T ss_pred CchHHHHHHHHHHHh----CCC--cEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCC--------
Confidence 446788999999986 543 34555566778887 667789999999999999764333 33345
Q ss_pred cCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCc
Q 013521 188 TGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS 267 (441)
Q Consensus 188 ~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~ 267 (441)
++++.++.++...+...+ .+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|...... .+
T Consensus 130 ----~~v~~vd~~d~~~l~~~i--~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~---~~ 197 (403)
T PRK07503 130 ----VTVRHVDLTDPAALKAAI--SDKTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQ---RP 197 (403)
T ss_pred ----EEEEEeCCCCHHHHHHhc--CccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC---Cc
Confidence 477777764211111111 358999999999999999998 889999999999999999999854321 12
Q ss_pred ccccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH--HHhhhcCCCcHHHHHHHHHhcCCCcH
Q 013521 268 IYEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR--IVCTCFNGASNIVQAGGLACLSPDGF 344 (441)
Q Consensus 268 ~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~ 344 (441)
+ .. +..+++.|+||.++.+| +|.||++.++++ .+++.. .........+++.+..+.. +.
T Consensus 198 l-~~----g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l--------~~~l~~~~~~~~~g~~~s~~~a~l~l~-----~L 259 (403)
T PRK07503 198 L-EL----GADLVVHSATKYLGGHGDITAGLVVGGKAL--------ADRIRLEGLKDMTGAVMSPFDAFLLMR-----GL 259 (403)
T ss_pred h-hh----CCCEEEccccccccCCCceeEEEEEcCHHH--------HHHHHhhhHHhCcCCCCCHHHHHHHHc-----Cc
Confidence 2 12 22489999999998655 788999877665 344432 1222233455555433332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 345 QALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+.+..+.++..++.+.+.+.|+++
T Consensus 260 ~tl~~r~~~~~~na~~~a~~L~~~ 283 (403)
T PRK07503 260 KTLALRMDRHCASAQAVAEWLARH 283 (403)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555666678888888889876
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=179.50 Aligned_cols=216 Identities=19% Similarity=0.200 Sum_probs=151.1
Q ss_pred CCCC--CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH----Hhccc
Q 013521 109 GYGA--EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQA 181 (441)
Q Consensus 109 ~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~ 181 (441)
.|+. .+....|+++||++. + .+++++++|+++|+.. +..++++||+|++.+|.|++....+. ..|
T Consensus 54 ~Y~r~~npt~~~Le~~iA~le----~--~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~G-- 125 (394)
T PRK09028 54 FYGRRGTPTHFAFQAAIVELE----G--GAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFG-- 125 (394)
T ss_pred eecCCCCchHHHHHHHHHHHh----C--CCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcc--
Confidence 4554 345679999999874 2 3578999999999997 67889999999999999988766442 233
Q ss_pred cccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc
Q 013521 182 GKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT 261 (441)
Q Consensus 182 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~ 261 (441)
+++..++.++.+.+...+ .+++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+....
T Consensus 126 ----------i~v~~v~~~~~e~l~~~l--~~~TklV~lespsNPtg~v~d---l~~I~~la~~~g~~lvvD~t~a~p~~ 190 (394)
T PRK09028 126 ----------IETTYYDPMIGEGIRELI--RPNTKVLFLESPGSITMEVQD---VPTLSRIAHEHDIVVMLDNTWASPIN 190 (394)
T ss_pred ----------eEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCcccccc
Confidence 466666543221221111 368999999999999987755 99999999999999999999984211
Q ss_pred CCCCCcccccCCCcceeEEEecCCcccCC-ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcC
Q 013521 262 DPSPRSIYEIPGAREVAIEISSFSKFAGF-TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS 340 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~i~i~S~SK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 340 (441)
-.| + . .+.++++.|.+|.++- ..+..|+++.+++. .+.+...........++.....+
T Consensus 191 -~~P--l-~----~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~--------~~~l~~~~~~~G~~~~p~~a~l~----- 249 (394)
T PRK09028 191 -SRP--F-E----MGVDISIQAATKYIVGHSDVMLGTATANEKH--------WDQLREHSYLMGQCTSPDDVYLA----- 249 (394)
T ss_pred -CCc--c-c----cCceEEEEeCCeEecCCCCEEEEEEECCHHH--------HHHHHHHHHhcCCCCCHHHHHHH-----
Confidence 112 1 1 2345999999999943 34667877765544 23344333334444555543222
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 341 PDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
..+.+.+.-+.++..++...+.+.|+++
T Consensus 250 ~rgl~TL~lR~~~~~~na~~la~~L~~~ 277 (394)
T PRK09028 250 MRGLRTLGVRLAQHEKNALKVANWLATR 277 (394)
T ss_pred HcccCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 2445556778888899999999999987
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-20 Score=179.76 Aligned_cols=328 Identities=14% Similarity=0.133 Sum_probs=200.2
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC---CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG---AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~---~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
.+++.|+.+... +.|+.+.+++.+.+..+........+. ......+.++.+ + .+++++++|++|+|+++++
T Consensus 26 ~~~iyld~~a~g-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----l~g~~~~~v~~~~~~t~~l 99 (406)
T TIGR01814 26 NAVIYLDGNSLG-LMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-R----LVGAKEDEVVVMNTLTINL 99 (406)
T ss_pred CCcEEecCCCcC-cCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-c----ccCCCCCcEEEeCCchHHH
Confidence 457999977755 568999999998877654322211121 111122222333 3 3588999999999999999
Q ss_pred HH-HHHhcCCC---CEEEEeCCCchhhHhHH----HHhccccccccccCcccee----EEeecCCCCCccCC-CCC----
Q 013521 149 SR-LQMLLGSN---VTVAVQDPSFPAYIDTS----VIVGQAGKFLKETGKYRNI----VYMNCRPENNFFPD-LST---- 211 (441)
Q Consensus 149 ~~-l~~l~~~g---d~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~v----~~v~~~~~~~~~~~-~~~---- 211 (441)
++ +..+++++ +.|++....|++....+ +..| .++ +.++.+.++...++ ++.
T Consensus 100 ~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 167 (406)
T TIGR01814 100 HLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHG------------LTVEESMVQIEPREEETLRLEDILDTIEK 167 (406)
T ss_pred HHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcC------------CCcccceEEeccCCCCccCHHHHHHHHHh
Confidence 98 56666664 36888889998854433 2334 244 45554432222221 211
Q ss_pred -CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC-
Q 013521 212 -TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG- 289 (441)
Q Consensus 212 -~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~- 289 (441)
.+++++|++++++|.||.+++ +++|+++|+++|+++++|++++.-.. +..+.. .+..+++.|.+|+++
T Consensus 168 ~~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~---~id~~~----~gvD~~~~s~hK~l~g 237 (406)
T TIGR01814 168 NGDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAVGNV---PLDLHD----WGVDFACWCTYKYLNA 237 (406)
T ss_pred cCCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEcccccCCc---cccccc----CCCCEEEEcCccccCC
Confidence 367899999999999999999 88999999999999999999984211 233322 244599999999874
Q ss_pred CccceeEEEEeeccccccCCchhHHH--------HHH-----H--HhhhcCCCcHHHHHH---HHHhcCCCcHHHHHHHH
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKD--------FNR-----I--VCTCFNGASNIVQAG---GLACLSPDGFQALRTVI 351 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~--------~~~-----~--~~~~~~~~~~~~~~a---~~~~l~~~~~~~~~~~~ 351 (441)
.|| |.+++.++......+..... +.. . ......+++.....+ ++..+.+.+ +++.+
T Consensus 238 ~pG---~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g---~~~i~ 311 (406)
T TIGR01814 238 GPG---AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAG---MEALR 311 (406)
T ss_pred CCC---eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcC---HHHHH
Confidence 344 33433332211100000000 000 0 000012233334333 333443333 36777
Q ss_pred HHHHHHHHHHHHHHHhC-----CCeeeCCC----CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE
Q 013521 352 DYYKENAKIIVDAFQSL-----GLKVNGGK----NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS 422 (441)
Q Consensus 352 ~~~~~~~~~l~~~L~~~-----g~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls 422 (441)
++.++..+++.+.|++. ++++..+. .+..+.+.++ ....++.+.|. ++||.+... .++.||+|
T Consensus 312 ~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~~~~~~~~L~-~~gi~v~~~------~~~~iRiS 383 (406)
T TIGR01814 312 KKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VPGKAVFQALI-KRGVIGDKR------EPSVIRVA 383 (406)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CCHHHHHHHHH-HCCEEEecc------CCCeEEEe
Confidence 78888888888888764 36665542 2345667776 45566767765 459987532 24689999
Q ss_pred e---ecCHHHHHHHHHHHHhhC
Q 013521 423 A---FGHREYISEACRRLKNFL 441 (441)
Q Consensus 423 ~---~~~~~~~~~~l~~l~~~l 441 (441)
+ ++++++++++++.|++++
T Consensus 384 ~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 384 PVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred chhccCCHHHHHHHHHHHHHHh
Confidence 6 458999999999998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-20 Score=180.12 Aligned_cols=332 Identities=14% Similarity=0.129 Sum_probs=201.7
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+++++|+..|- ..+ ..+|.+.+++.+.+.+... ....|. ..-..+|.+.++++ .+ .+.+++++++++|
T Consensus 34 G~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~--~~~~~~-~~~~~~la~~L~~~----~~--~~~~~f~~SGseA 104 (397)
T TIGR03246 34 GKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWH--IGNGYT-NEPVLRLAKKLVDA----TF--ADKVFFCNSGAEA 104 (397)
T ss_pred CCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccc--ccCccC-CHHHHHHHHHHHhh----CC--CCEEEEeCCcHHH
Confidence 56788987752 212 3689999999998875321 111222 22234555555554 23 4689999999998
Q ss_pred HHH-HHHh--c------CCCCEEEEeCCCchhhHhHHHH-hcccc---ccccccCccceeEEeecCCCCCccCCCCC--C
Q 013521 148 ISR-LQML--L------GSNVTVAVQDPSFPAYIDTSVI-VGQAG---KFLKETGKYRNIVYMNCRPENNFFPDLST--T 212 (441)
Q Consensus 148 l~~-l~~l--~------~~gd~Vlv~~p~y~~~~~~~~~-~g~~~---~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~ 212 (441)
... +... . ...+.|+..+-+|++....... .+... .+.+.. ..+..++.++. .++++ .
T Consensus 105 ~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~----~~l~~~l~ 177 (397)
T TIGR03246 105 NEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLP---GGIKHAPYNDL----AAAKALIS 177 (397)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCC---CceEEeCCCCH----HHHHHHhc
Confidence 876 4222 1 1235788888888886433322 22110 000000 12333333211 11111 2
Q ss_pred CCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 213 SRTDIIFFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++++|++..++++.|... +.+.+++|.++|++||+++|.||+|..+...+.......+.-.+| +-++||.+| +
T Consensus 178 ~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pD----i~t~~K~lg-g 252 (397)
T TIGR03246 178 DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD----ILTSAKALG-G 252 (397)
T ss_pred cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCC----EEEeehhhh-C
Confidence 4677777654455566554 899999999999999999999999976644432211112221233 337999998 8
Q ss_pred cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC--
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-- 369 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-- 369 (441)
|+++||+++++++. +.+.........+.+++.+.++.+.++... -+++.+.++++.+++.+.|++++
T Consensus 253 G~pigav~~~~~i~--------~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~---~~~l~~~~~~~~~~l~~~L~~l~~~ 321 (397)
T TIGR03246 253 GFPIGAMLTTTEIA--------AHLKVGTHGTTYGGNPLACAVAGKVLDLVN---TPELLAGVKQRHDLFVDGLEKINAR 321 (397)
T ss_pred CcceeEEEEcHHHH--------HhccCCCcCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998773 333322222334467888888888886321 14567888888888888887753
Q ss_pred --CeeeCCCCceEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 370 --LKVNGGKNAPYVWVQFPG---SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 370 --~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+.......|.++.+.+.. .....+...++++ ||.+.+. +.+++|++ +..+++++++++++|.+++
T Consensus 322 ~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------g~~~lR~~p~~~~t~~~i~~~~~~l~~~l 393 (397)
T TIGR03246 322 YNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEE-GVIALIA------GPNVVRFAPSLVISDDDIDEGLARFERAI 393 (397)
T ss_pred CCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHHC-CeEEeec------CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 111111235555565532 1344566666654 9998763 24689995 5669999999999998763
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-20 Score=176.46 Aligned_cols=301 Identities=15% Similarity=0.207 Sum_probs=186.0
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEEe
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAVQ 164 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv~ 164 (441)
.+...+++.+.+.. ... + |..++++++.+++.+.++ .+++++|+|+++++.+ +..+ ++|||+|+++
T Consensus 10 ~~~e~~a~~~~~~~----~~~--~----~~g~~~~~~e~~la~~~g--~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~ 77 (376)
T TIGR02379 10 TGQELEYIAEAISE----GKL--S----GDGPFSRRCETWLENRTG--TKKALLTPSCTAALEMAALLLDIQPGDEVIMP 77 (376)
T ss_pred CHHHHHHHHHHHHc----CCc--c----CCcHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEEC
Confidence 45567788887753 111 1 223456666666654434 4689999999999987 5555 7999999999
Q ss_pred CCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHH
Q 013521 165 DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKL 239 (441)
Q Consensus 165 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i 239 (441)
.|+|++....+...| .+++.++++++ ++.+|++. .+++++|+ |+||||...+ +++|
T Consensus 78 ~~t~~~~~~~~~~~G------------~~~v~vd~d~~-~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d---~~~I 138 (376)
T TIGR02379 78 SYTFVSTANAFVLRG------------AKIVFVDIRPD-TMNIDETLIESAITHRTKAIV---PVHYAGVACD---MDTI 138 (376)
T ss_pred CCCcHHHHHHHHHcC------------CEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCCCCccC---HHHH
Confidence 999999988888888 58999999865 34455322 36788876 6778999988 7799
Q ss_pred HHHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecCC----cccCCccceeEEEEeeccccccCCchhHH
Q 013521 240 VEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSFS----KFAGFTGVRLGWTVVPEELRYSNGYPVIK 314 (441)
Q Consensus 240 ~~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~S----K~~~~~G~r~G~l~~~~~~~~~~~~~~~~ 314 (441)
.++|++||++||+|++|+... +++.+ +..+ ..+++|| |.+. +|.+.|+++++++.+ .+
T Consensus 139 ~~la~~~~i~vIeDaa~~~g~~~~~~~--~g~~-------~~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~-------~~ 201 (376)
T TIGR02379 139 MALANKHQLFVIEDAAQGVMSTYKGRA--LGSI-------GHLGTFSFHETKNYT-SGGEGGALLINDQAF-------IE 201 (376)
T ss_pred HHHHHHCCCEEEEECccccCCccCCcc--cCCC-------CCEEEEeCCCCCcCc-ccCCceEEEECCHHH-------HH
Confidence 999999999999999998654 33322 2111 1234444 8885 888999999886543 34
Q ss_pred HHHHHHhhhc-----------------CC----CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC---C-
Q 013521 315 DFNRIVCTCF-----------------NG----ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL---G- 369 (441)
Q Consensus 315 ~~~~~~~~~~-----------------~~----~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g- 369 (441)
++..++.... .+ .+.+ |+ +... ...+.+++..+.-++..+...+.|.++ +
T Consensus 202 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~-~A-a~g~---~qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~ 276 (376)
T TIGR02379 202 RAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSEL-QA-AYLW---AQLEQADRINQDRLATWQLYQDALKPLEEKGI 276 (376)
T ss_pred HHHHHHHhCCCCccccccCCCcceeeeecccCCccHH-HH-HHHH---HHHHHhHHHHHHHHHHHHHHHHHhccCCcCCe
Confidence 4444433211 01 1111 21 1111 122334555555555555566666543 2
Q ss_pred CeeeC-CCCc----eEEEEEcCC-CChHHHHHHHHHhcCeEEeCCC----CcC------C-CC---------CCeEEEEe
Q 013521 370 LKVNG-GKNA----PYVWVQFPG-SSSWDVFAEILEKTHILTIPGS----GFG------P-GG---------NEHIRVSA 423 (441)
Q Consensus 370 ~~~~~-~~~~----~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~----~f~------~-~~---------~~~iRls~ 423 (441)
+.+.. +++. .+.++.++. .+..++.+.|. ++||.+++.. ... . .+ ...+.|-+
T Consensus 277 ~~~~~~~~~~~~~~~~~~i~~~~~~~r~~l~~~L~-~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~ 355 (376)
T TIGR02379 277 IELPSIPNGCQHNAHMFYIKLKDEDDRNELIKYLK-EQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPL 355 (376)
T ss_pred eeCCCCCCCCeeeeEEEEEEECCcCCHHHHHHHHH-HCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccC
Confidence 22211 1121 234566653 24456666554 5599887432 110 0 00 23455555
Q ss_pred ec--CHHHHHHHHHHHHhhC
Q 013521 424 FG--HREYISEACRRLKNFL 441 (441)
Q Consensus 424 ~~--~~~~~~~~l~~l~~~l 441 (441)
.. ++++++..++.|++++
T Consensus 356 ~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 356 YYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 33 7899999999998753
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=178.78 Aligned_cols=341 Identities=11% Similarity=0.084 Sum_probs=198.8
Q ss_pred CCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcH
Q 013521 70 PDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG-DEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~ 145 (441)
.++..+|+..|-. .+ ..+|.+.+++.+.+.+... .....+ ..+.+..+|+.|....+... +.++++++++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~-----~~~~~~~la~~L~~~~p~~~~~~v~f~~sGs 125 (451)
T PRK06918 52 DGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIH-TGFNVM-----MYEPYIELAEKLAALAPGSFDKKVLFLNSGA 125 (451)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccC-cccccc-----ccHHHHHHHHHHHHhCCCCCCCEEEEcCCcH
Confidence 4567888876642 22 3678899999998875321 011111 12344555555544233222 6899999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHh-ccccc----cccccCccceeEEeecCCC----CCccC------
Q 013521 146 SDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGK----FLKETGKYRNIVYMNCRPE----NNFFP------ 207 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~----~~~~~~~~~~v~~v~~~~~----~~~~~------ 207 (441)
+|... + .........|+....+|++....+... +.... +.+.. ..+..+|.... .+...
T Consensus 126 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (451)
T PRK06918 126 EAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFA---PEVYKAPFPYEYRRPEGLTEEQYDDF 202 (451)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCC---CCcEEcCCCccccccccCchHHHHHH
Confidence 99886 3 222334467888999999975544433 21100 00000 11222222110 00000
Q ss_pred ---CC-------CCCCCccEEEEcCCCCcc-ccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCc
Q 013521 208 ---DL-------STTSRTDIIFFCSPNNPT-GHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR 275 (441)
Q Consensus 208 ---~~-------~~~~~~~~v~i~~p~NPt-G~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~ 275 (441)
.+ ....++. .+|..|-... |.+++ .+.+++|.++|++||+++|+||+|..|...+.+.+...++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~iA-avi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~p 281 (451)
T PRK06918 203 MIEEFKNFFISEVAPETIA-AVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVP 281 (451)
T ss_pred HHHHHHHHHHhhcCCCceE-EEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCC
Confidence 00 0112344 4556884444 66554 5559999999999999999999999887665444444443234
Q ss_pred ceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcC---CCcH-HHHHHHH
Q 013521 276 EVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS---PDGF-QALRTVI 351 (441)
Q Consensus 276 ~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~-~~~~~~~ 351 (441)
| +.||||.++ +|+|+||++++++++ +.+.........+.+++.|.++.+.++ +... ++++.+.
T Consensus 282 D----i~t~sK~l~-~G~pig~v~~~~~i~--------~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g 348 (451)
T PRK06918 282 D----LITVSKSLG-AGVPISGVIGRKEIM--------DESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELG 348 (451)
T ss_pred C----EEeeehhhc-CCCccEEEEEcHHHH--------hccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4 558999998 999999999998874 333322333455678899998777765 2222 3344444
Q ss_pred HHHHHHHHHHHHHHHhCC-CeeeCCCCceEEEEEcCC----CCh----HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE
Q 013521 352 DYYKENAKIIVDAFQSLG-LKVNGGKNAPYVWVQFPG----SSS----WDVFAEILEKTHILTIPGSGFGPGGNEHIRVS 422 (441)
Q Consensus 352 ~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~----~~~----~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls 422 (441)
+.++++.+.+.+ +++ +....+.++++.|....+ ..+ ..+...+ .++||.+.|+..|+ +++||+
T Consensus 349 ~~l~~~l~~l~~---~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~Gvlv~~~~~~~----~~lrl~ 420 (451)
T PRK06918 349 KVVMNRFEEMKN---KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEA-NKRGLLLLSAGTYG----NVIRVL 420 (451)
T ss_pred HHHHHHHHHHHh---hCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHH-HHCCeEEeecCCCC----CEEEEE
Confidence 333333333222 232 222334566666655421 111 2233333 45699999986653 689999
Q ss_pred e--ecCHHHHHHHHHHHHhhC
Q 013521 423 A--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 423 ~--~~~~~~~~~~l~~l~~~l 441 (441)
+ ..+++++++++++|.+++
T Consensus 421 p~l~~t~~~id~~l~~l~~~l 441 (451)
T PRK06918 421 MPLVITDEQLEEGLTIIEESL 441 (451)
T ss_pred CCCccCHHHHHHHHHHHHHHH
Confidence 6 358999999999998764
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-19 Score=177.92 Aligned_cols=343 Identities=9% Similarity=0.047 Sum_probs=203.7
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~ 145 (441)
.++..+|+..|- ..+ ..+|.+.+++.+.+.+.. ...+. ....+....+|+.+.+..+. ..+.++++++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~----~~~~~--~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGs 111 (421)
T PRK09792 38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFT----HTAYQ--IVPYESYVTLAEKINALAPVSGQAKTAFFTTGA 111 (421)
T ss_pred CCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhcc----CcccC--ccCCHHHHHHHHHHHHhCCCCCCceEEEeCChH
Confidence 456788886553 222 367899999999987632 11111 01223334455555432222 236889999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHh-ccc----cccccccCccceeEEeecCCC-CCccC-----CCCC
Q 013521 146 SDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIV-GQA----GKFLKETGKYRNIVYMNCRPE-NNFFP-----DLST 211 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~----~~~~~~~~~~~~v~~v~~~~~-~~~~~-----~~~~ 211 (441)
+|+.. + ........+|+....+|++....+... +.. ..+.+.. ..+..+|...+ .+... .++.
T Consensus 112 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~---~~~~~v~~p~~~~~~~~~~~~~~l~~ 188 (421)
T PRK09792 112 EAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFP---GSVYHVPYPSDLHGISTQDSLDAIER 188 (421)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCC---CCcEEcCCCcccccccHHHHHHHHHH
Confidence 99886 4 222333467999999999975443332 211 0011100 12333333211 11100 1111
Q ss_pred -------CCCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEec
Q 013521 212 -------TSRTDIIFFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISS 283 (441)
Q Consensus 212 -------~~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 283 (441)
..++++|++.-.++|+|..+ |++.+++|.++|++||+++|+||++..|...+.+.+...+...+| +.|
T Consensus 189 ~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pD----i~t 264 (421)
T PRK09792 189 LFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPD----LMT 264 (421)
T ss_pred HHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCc----EEE
Confidence 13566766543399999876 999999999999999999999999998876654444444433445 678
Q ss_pred CCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHH
Q 013521 284 FSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIV 362 (441)
Q Consensus 284 ~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~ 362 (441)
|||.++ +|+|+||+++++++. +.+.......+.+.+++.+.++.+.++--.. .++++.+ .+.++.+...
T Consensus 265 ~gK~l~-~G~pigav~~~~~i~--------~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~-~~g~~l~~~l 334 (421)
T PRK09792 265 MAKSLA-GGMPLSGVVGNANIM--------DAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERAN-QLGQRLKNTL 334 (421)
T ss_pred eehhhc-CCCceEEEEEcHHHH--------hccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHH
Confidence 999998 999999999988874 2222222334455788899877766652111 2334443 2233322222
Q ss_pred HHHH-hCCCeeeCCCC-ceEEEEEcCCC--------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHH
Q 013521 363 DAFQ-SLGLKVNGGKN-APYVWVQFPGS--------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYI 430 (441)
Q Consensus 363 ~~L~-~~g~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~ 430 (441)
+.|. +++... ...+ |.++|++++.. ....+...+++ +||.+.+.. ...+.|||.. ..+++++
T Consensus 335 ~~l~~~~p~v~-~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~g----~~~~~irl~P~l~i~~~ei 408 (421)
T PRK09792 335 IDAKESVPAIA-AVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALA-QGLLLLTCG----AYGNVIRFLYPLTIPDAQF 408 (421)
T ss_pred HHHHHhCCCcc-eecccceEEEEEecCCccCCcchHHHHHHHHHHHH-CCcEEeecC----CCCCEEEEeCCCcCCHHHH
Confidence 3332 234322 2345 89999999632 12345555555 599996421 1257899995 3589999
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
++++++|.+++
T Consensus 409 ~~~~~~l~~~l 419 (421)
T PRK09792 409 DAAMKILQDAL 419 (421)
T ss_pred HHHHHHHHHHH
Confidence 99999998864
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-19 Score=176.66 Aligned_cols=340 Identities=11% Similarity=0.074 Sum_probs=197.9
Q ss_pred CCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcH
Q 013521 70 PDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~ 145 (441)
.++..+|+..|.. .+ ..+|.+.+++.+.+.+.. ...+. ....+.+..+|+.+.+..+. ..+.++++++++
T Consensus 31 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~----~~~~~--~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs 104 (420)
T TIGR00700 31 DGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFT----HTCFM--VTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGA 104 (420)
T ss_pred CCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhcc----Ccccc--ccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcH
Confidence 3567888876642 22 357889999999887532 11111 01122333444444332221 236899999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHh-ccc----cccccccCccceeEEeecCCCC---------Ccc--
Q 013521 146 SDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIV-GQA----GKFLKETGKYRNIVYMNCRPEN---------NFF-- 206 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~----~~~~~~~~~~~~v~~v~~~~~~---------~~~-- 206 (441)
+|+.. + .........|+....+|++....+... +.. ..+.+.. ..+..++..... .+.
T Consensus 105 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (420)
T TIGR00700 105 EAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFA---PEVYRAPLPYPYRDGLLDKQLSTDGE 181 (420)
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCC---CCcEEeCCCccccccccccchhHHHH
Confidence 99886 4 222334467888899999975444433 210 0010000 122223221000 000
Q ss_pred C-CCC-------CCCCccEEEEcCC-CCccccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 207 P-DLS-------TTSRTDIIFFCSP-NNPTGHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 207 ~-~~~-------~~~~~~~v~i~~p-~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
. .++ ..+++.+|++ .| +.-+|.+++ .+.+++|.++|++||+++|+||+|..|...+...+.....-.+|
T Consensus 182 ~~~~~~~~~~~~~~~~iAavi~-Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pD 260 (420)
T TIGR00700 182 LAAARAIFVIDVGANNVAALVI-EPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPD 260 (420)
T ss_pred HHHHHHHHHhhcCCCcEEEEEE-CCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCC
Confidence 0 010 1245556554 66 666888765 44599999999999999999999998866553323322322233
Q ss_pred eeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcC---CCcH-HHHHHHHH
Q 013521 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS---PDGF-QALRTVID 352 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~-~~~~~~~~ 352 (441)
+.+|||.++ +|+|+||++++++++ +.+.......+.+.++++|.++.+.++ +... ++.+++.+
T Consensus 261 ----i~~lsK~l~-~G~pig~v~~~~~i~--------~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~ 327 (420)
T TIGR00700 261 ----LITTAKSLA-DGLPLSGVTGRAEIM--------DAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGR 327 (420)
T ss_pred ----EEEeecccc-CCcceEEEEecHHHH--------hhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 456999998 999999999998874 333222233455678999998877764 2222 22333333
Q ss_pred HHHHHHHHHHHHHHhCC-CeeeCCCCceEEEEEcCCC----ChH----HHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe
Q 013521 353 YYKENAKIIVDAFQSLG-LKVNGGKNAPYVWVQFPGS----SSW----DVFAEILEKTHILTIPGSGFGPGGNEHIRVSA 423 (441)
Q Consensus 353 ~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~----~~~----~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~ 423 (441)
.++ +.+.+..++++ +....+ .|.++|+++... .+. .+...+ .++||.+.|+..|+ ++|||+.
T Consensus 328 ~l~---~~L~~l~~~~~~~~~vrg-~G~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~p~~~f~----~~lRl~p 398 (420)
T TIGR00700 328 LVT---DRLTTLKAVDPRIGDVRG-LGAMIAVELVDPGTTEPDAGLAERIATAA-HAAGLLLLTCGMFG----NIIRFLP 398 (420)
T ss_pred HHH---HHHHHHHhhCCCEEEeec-cceEEEEEEecCCCCCccHHHHHHHHHHH-HHCCeEEeccCCCC----CEEEEEC
Confidence 322 22323223333 323333 488888887311 122 233333 45699999987764 6899996
Q ss_pred e--cCHHHHHHHHHHHHhhC
Q 013521 424 F--GHREYISEACRRLKNFL 441 (441)
Q Consensus 424 ~--~~~~~~~~~l~~l~~~l 441 (441)
. .+++++++++++|.+++
T Consensus 399 ~l~~~~~~l~~~~~~l~~~l 418 (420)
T TIGR00700 399 PLTIGDELLSEGLDILCAIL 418 (420)
T ss_pred CCCcCHHHHHHHHHHHHHHh
Confidence 3 48999999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-20 Score=177.14 Aligned_cols=215 Identities=17% Similarity=0.150 Sum_probs=146.1
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCcc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 191 (441)
.+...+|++.+|+++ + .+++++++|+++|+.. +..++++||+|+++.|.|.+....+..+...|
T Consensus 52 np~~~~lE~~lA~l~----g--~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g--------- 116 (385)
T PRK08574 52 NPTLRPLEEALAKLE----G--GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFG--------- 116 (385)
T ss_pred CccHHHHHHHHHHHh----C--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccC---------
Confidence 457889999999986 4 3577888888999887 67889999999999999999877765442222
Q ss_pred ceeEEeecCCCCCccCCCCCCC-CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc
Q 013521 192 RNIVYMNCRPENNFFPDLSTTS-RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE 270 (441)
Q Consensus 192 ~~v~~v~~~~~~~~~~~~~~~~-~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~ 270 (441)
+++..+..+.+ .+...+ .+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... .++ .
T Consensus 117 ~~v~~~~~d~~-~l~~~i--~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~---~~l-~ 186 (385)
T PRK08574 117 VKVVLAYPSTE-DIIEAI--KEGRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLY---RPL-R 186 (385)
T ss_pred cEEEEECCCHH-HHHHhc--CccCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC---Chh-h
Confidence 35555543321 111111 23 7899999999999999999 779999999999999999998632211 112 1
Q ss_pred cCCCcceeEEEecCCcccCCccce-eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHH
Q 013521 271 IPGAREVAIEISSFSKFAGFTGVR-LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRT 349 (441)
Q Consensus 271 ~~~~~~~~i~i~S~SK~~~~~G~r-~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 349 (441)
. +.++++.|+||.++.+|-. .|++++.++.+ .+++...+.......+++....++.. .+.+..
T Consensus 187 ~----GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~-------~~~~~~~~~~~g~~~~p~~a~l~l~~-----l~tL~~ 250 (385)
T PRK08574 187 H----GADFVVHSLTKYIAGHNDVVGGVAVAWSGEF-------LEELWEWRRRLGTIMQPFEAYLVLRG-----LKTLEV 250 (385)
T ss_pred h----CCcEEEeeCceeecCCCCceeEEEEECcHHH-------HHHHHHHHHhcCCCCCHHHHHHHHcc-----cCcHHH
Confidence 1 2359999999999756655 47667644332 34444444433334455433222222 333456
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 013521 350 VIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~ 368 (441)
+.++..++...+.+.|+++
T Consensus 251 R~~~~~~na~~la~~L~~~ 269 (385)
T PRK08574 251 RFERQCRNAMAIAEFLSEH 269 (385)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 6677777888888899876
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=170.63 Aligned_cols=325 Identities=18% Similarity=0.236 Sum_probs=194.5
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC-----CcCcHHHHHHHHHHHhh-h-CCCCCCcEEEcCCcHHH
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA-----EQGNMALRTAIADKFYK-D-MGIEGDEIFISDGAQSD 147 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~ia~~l~~-~-~~~~~~~I~~t~G~~~a 147 (441)
+|++.|+|.+. ++.|....+.-.-....-...+|.. ..-.++|.+.|.+.... | --.+...|++++|+++.
T Consensus 1 ~d~d~GDP~~~--E~yW~~~~~~~avvi~gw~rMSY~~~~~~~~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL 78 (363)
T PF04864_consen 1 ADADSGDPTFF--EPYWRRHGDSSAVVIPGWHRMSYFSDSSNGWFISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQL 78 (363)
T ss_dssp EEESS---GGG--HHHHCCTHHHH-EEE-TTTT-SSSS-TTSSTTS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHH
T ss_pred CCcCCCCchhh--HHHHHhcCcceeEEEeccccceeEEecCCceeccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHH
Confidence 47778887643 4444433333221111122234443 23458888888876543 3 22456699999999999
Q ss_pred HHH-HHHhcC----CC--CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEE
Q 013521 148 ISR-LQMLLG----SN--VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFF 220 (441)
Q Consensus 148 l~~-l~~l~~----~g--d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i 220 (441)
++. +.+|.. .+ -.|+...|-|+.|......+... ...+ .-|. ..|. + .....+-+=++
T Consensus 79 ~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~-----------~y~w-~Gda-~~~~-~-~~~~~~~IElV 143 (363)
T PF04864_consen 79 FNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSR-----------LYKW-AGDA-SNFK-N-SDNPSPYIELV 143 (363)
T ss_dssp HHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BT-----------TEEE-EEEC-CCGT-T--S-CCGEEEEE
T ss_pred HHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhcccc-----------Cccc-cccH-Hhhc-c-CCCCCCeEEEE
Confidence 997 555531 11 37899999999998776555421 1111 1111 1221 0 11134445577
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
++||||.|.+ ++.++ +..+..+|.|-+|.+-.+.. +.. ..|..|.+.|+||.-|-+|.|+||.++
T Consensus 144 TSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTp----I~~---~aD~DiMLFT~SK~TGHAGSR~GWAlV 208 (363)
T PF04864_consen 144 TSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTP----ITA---PADHDIMLFTLSKLTGHAGSRFGWALV 208 (363)
T ss_dssp ESS-TTT-----------SS---TTTEEEEEEE-TT-STTTS-------S----B--SEEEEEHHHHCS-GGG-EEEEEE
T ss_pred eCCCCCcccc-----cchhc---CCCCcceeeeeeeecccccc----cCC---CCCCceEEEEEecccCccccccceeee
Confidence 8999999987 55555 34556789999998744442 221 124459999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC----CcH-----HHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP----DGF-----QALRTVIDYYKENAKIIVDAFQSL-GL 370 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~-----~~~~~~~~~~~~~~~~l~~~L~~~-g~ 370 (441)
.++.+ .+.+..+......++|.=+|.-++.+|+. .+. +..+--++..++|.+.|.+.+..- -+
T Consensus 209 KD~~V-------a~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rF 281 (363)
T PF04864_consen 209 KDEEV-------AKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRF 281 (363)
T ss_dssp S-HHH-------HHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSE
T ss_pred cCHHH-------HHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCce
Confidence 98886 66777777778888999999888887761 111 245666788888999999998765 22
Q ss_pred eee--C-----------CCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHH
Q 013521 371 KVN--G-----------GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRL 437 (441)
Q Consensus 371 ~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l 437 (441)
.+. . .+...|.|++++...+ +-+...|++.||..+.|..|+. ++.++|||+-.++++++.++++|
T Consensus 282 SLq~~~~~yC~ff~~~~~psPafAWlkCe~eed-~DC~~~l~~~~I~tr~G~~fga-~~ryVRlSml~~~d~Fd~l~~rL 359 (363)
T PF04864_consen 282 SLQKFSPQYCNFFKRVREPSPAFAWLKCEREED-EDCYAVLREAKIITRSGVLFGA-DSRYVRLSMLKRDDDFDQLLERL 359 (363)
T ss_dssp EE---SCEEETTTTCEEE---SEEEEEESSCGG-SSHHHHHHCTTEEEEEGGGGTS--TTEEEEESSS-HHHHHHHHHHH
T ss_pred ecCcCCchhccccccccCCCCCeEEEecCCccc-ccHHHHHHhCCcccCCCCccCC-CCCeEEEeccCCHHHHHHHHHHH
Confidence 221 1 1245699999984332 3456667788999999999986 68899999988999999999999
Q ss_pred Hhh
Q 013521 438 KNF 440 (441)
Q Consensus 438 ~~~ 440 (441)
..+
T Consensus 360 ~~l 362 (363)
T PF04864_consen 360 SKL 362 (363)
T ss_dssp HCC
T ss_pred Hhh
Confidence 875
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.7e-20 Score=177.44 Aligned_cols=217 Identities=18% Similarity=0.220 Sum_probs=145.2
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhccc
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQA 181 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~ 181 (441)
+..|+ .+-..+|++.+|++. +.+ ..++++++++++.+ +..++++||+|+++.|.|.+....+ ...|
T Consensus 53 y~r~~-~p~~~~le~~lA~l~----g~~--~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G-- 123 (391)
T TIGR01328 53 YSRLG-NPTVSNLEGRIAFLE----GTE--AAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFG-- 123 (391)
T ss_pred eeCCC-CchHHHHHHHHHHHh----CCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCC--
Confidence 33443 345778999999996 543 35667777778876 6778899999999999887644333 3344
Q ss_pred cccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc
Q 013521 182 GKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT 261 (441)
Q Consensus 182 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~ 261 (441)
.+++.++.++...+...+ .+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|.....
T Consensus 124 ----------~~~~~vd~~d~e~l~~~i--~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~ 188 (391)
T TIGR01328 124 ----------IQVDFINMAIPEEVKAHI--KDNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPML 188 (391)
T ss_pred ----------eEEEEECCCCHHHHHHhh--ccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhcc
Confidence 477777764211111111 367899999999999999998 78889999999999999999985332
Q ss_pred CCCCCcccccCCCcceeEEEecCCcccCCcccee-EEEEeeccccccCCchhHHHHHHHHh--hhcCCCcHHHHHHHHHh
Q 013521 262 DPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYSNGYPVIKDFNRIVC--TCFNGASNIVQAGGLAC 338 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~ 338 (441)
. .++. . +..+++.|+||.+|.+|.++ |++++++++ ++.+..... ......+++....+...
T Consensus 189 ~---~~~~-~----g~Divv~S~sK~lgg~g~~~gG~v~~~~~l--------i~~l~~~~~~~~~g~~l~~~~a~l~l~~ 252 (391)
T TIGR01328 189 T---NPVA-L----GVDVVVHSATKYIGGHGDVVAGLICGKAEL--------LQQIRMVGIKDMTGSVISPFDAWLILRG 252 (391)
T ss_pred C---Cchh-c----CCCEEEccccccccCCCCceEEEEEcCHHH--------HHHHHHHHHHhCCCCCCCcHHHHHHHhC
Confidence 1 1121 1 22388999999999888774 677776665 334443221 11222344443333322
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 339 LSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+ +.+..+.++.+++.+.+.+.|+++
T Consensus 253 L-----~tl~~r~~~~~~na~~la~~L~~~ 277 (391)
T TIGR01328 253 L-----KTLNIRMKRHSENAMKVAEYLKSH 277 (391)
T ss_pred c-----CcHHHHHHHHHHHHHHHHHHHHhC
Confidence 2 234556777888899999999887
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=175.28 Aligned_cols=266 Identities=19% Similarity=0.180 Sum_probs=171.5
Q ss_pred cHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHH----HhccccccccccCcc
Q 013521 116 NMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAGKFLKETGKY 191 (441)
Q Consensus 116 ~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~~~~~ 191 (441)
..+|++.+++++ +. ++++++++++.++.++..++++||+|+++.+.|++....+. ..|
T Consensus 49 ~~~le~~la~l~----g~--~~~l~~~sG~~al~~~l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G------------ 110 (378)
T TIGR01329 49 RTALESLLAKLD----KA--DRAFAFSSGMAALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSG------------ 110 (378)
T ss_pred HHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHHHHHcC------------
Confidence 456666676664 54 56666666677888765688999999999999988765433 345
Q ss_pred ceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc
Q 013521 192 RNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 192 ~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
.+++.++..+.+.+...+ .+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..... ..++ ..
T Consensus 111 ~~v~~vd~~d~~~le~~i--~~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~~---~~~l-~~ 181 (378)
T TIGR01329 111 VVVVHVDTTDLDKVKAAL--GPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPLL---CNPL-EL 181 (378)
T ss_pred cEEEEeCCCCHHHHHHhc--CcCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCccccc---CChh-hc
Confidence 478888764221221111 368999999999999999998 99999999999999999999853211 1222 22
Q ss_pred CCCcceeEEEecCCcccCC-ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHH
Q 013521 272 PGAREVAIEISSFSKFAGF-TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTV 350 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 350 (441)
+..+++.|++|.++. .+++.|+++++++.+ .+++...+.......++.... ++. .+.+.+..+
T Consensus 182 ----g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~-------~~~~~~~~~~~G~~~~~~~a~----l~~-~~l~tl~~R 245 (378)
T TIGR01329 182 ----GADIVYHSATKFLAGHSDVMAGVLAVKGEEI-------AKKVYFLQNSTGSGLAPFDCW----LLL-RGIKTLAIR 245 (378)
T ss_pred ----CCcEEEEecceeccCCccceeEEEEeCcHHH-------HHHHHHHHHhcCCcCCHHHHH----HHH-ccCCCHHHH
Confidence 224999999998863 347799999865543 344444444333334444322 111 233445666
Q ss_pred HHHHHHHHHHHHHHHHhC-CC-ee-eCC---------------CCceEEEEEcCCCC-hHHHHHHHHHhcCeEEeCCCCc
Q 013521 351 IDYYKENAKIIVDAFQSL-GL-KV-NGG---------------KNAPYVWVQFPGSS-SWDVFAEILEKTHILTIPGSGF 411 (441)
Q Consensus 351 ~~~~~~~~~~l~~~L~~~-g~-~~-~~~---------------~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~v~pg~~f 411 (441)
.++..++...+.+.|+++ .+ ++ ++. ..|..+.+.+.+.. ..+++..| +..++.++-|...
T Consensus 246 ~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L-~~~~i~~s~G~~~ 324 (378)
T TIGR01329 246 IEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEAT-KLFSITVSFGSVN 324 (378)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhC-cCcccccCCCCCC
Confidence 777788888888888876 22 11 110 12346777774323 33555554 6668888877654
Q ss_pred C----C-----------------CCCCeEEEEeec
Q 013521 412 G----P-----------------GGNEHIRVSAFG 425 (441)
Q Consensus 412 ~----~-----------------~~~~~iRls~~~ 425 (441)
. + -.++.||||++.
T Consensus 325 sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl 359 (378)
T TIGR01329 325 SLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI 359 (378)
T ss_pred ceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc
Confidence 2 0 125789999865
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=175.16 Aligned_cols=238 Identities=16% Similarity=0.148 Sum_probs=155.6
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhcccccccc
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK 186 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~ 186 (441)
+.+| +.+...+|++++|++. ..+++++++|+++|+.+++.++++||+|+++.+.|.+-...+......+.
T Consensus 48 Y~R~-~~p~~~~le~~lA~le------g~~~~v~~~sG~aAi~~~l~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~--- 117 (364)
T PRK07269 48 YTRT-KNPTRAKLEETLAAIE------SADYALATSSGMSAIVLAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGR--- 117 (364)
T ss_pred eeCC-CCccHHHHHHHHHHHh------CCCeEEEeCCHHHHHHHHHHHhCCCCEEEEecCCcCchHHHHHHHHhcCc---
Confidence 3445 3457889999999985 36799999999999998556789999999999999776554443321100
Q ss_pred ccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC
Q 013521 187 ETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR 266 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~ 266 (441)
..+... .+.+ .+...+ .+++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|...... .
T Consensus 118 -----~~~~~~-~d~~-~l~~~i--~~~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~~---~ 182 (364)
T PRK07269 118 -----FHFTYA-NTEE-ELIAAI--EEDTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIYQ---R 182 (364)
T ss_pred -----EEEEec-CCHH-HHHHhc--CcCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC---C
Confidence 122221 1111 111111 368999999999999999887 889999999999999999997632211 1
Q ss_pred cccccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 267 SIYEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 267 ~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
++. . .-.+++.|++|.++.+| .=.|+++++++.+ .+++...+.......+++....+..-| +
T Consensus 183 pl~-~----gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l-------~~~~~~~~~~~G~~~s~~~a~l~~~~L-----~ 245 (364)
T PRK07269 183 PIE-L----GADIVLHSATKYLSGHNDVLAGVVVTNDLEL-------YEKLFYNLNTTGAVLSPFDSYLLMRGL-----K 245 (364)
T ss_pred chh-h----CCcEEEecCceeccCCCcccceEEEeCcHHH-------HHHHHHHHHHhCCCCCHHHHHHHHcCC-----C
Confidence 221 1 22389999999997323 1258888765443 344444443333445565544333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CC-eeeCCCCceEEEEEcC
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSL-GL-KVNGGKNAPYVWVQFP 386 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~~~~~~~~ 386 (441)
.+..+.++.+++.+.+.+.|+++ ++ ++.-|..|..+.+.+.
T Consensus 246 tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 246 TLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEEC
Confidence 45777788889999999999987 43 3432334445555554
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-19 Score=173.88 Aligned_cols=344 Identities=12% Similarity=0.057 Sum_probs=206.0
Q ss_pred CCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcH
Q 013521 70 PDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~ 145 (441)
.++.++|+..|.. .+ ..+|.+.+++.+.+.+... ....+.+. +....+|+.+....+. ..+.++++++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~--~~~~~~~~----~~~~~la~~l~~~~p~~~~~~~~f~~sGs 111 (421)
T PRK06777 38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTH--TAYQIVPY----ASYVTLAERINALAPIDGPAKTAFFTTGA 111 (421)
T ss_pred CCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhccc--ccccccCC----hHHHHHHHHHHHhCCCCCCceEEEeCCcH
Confidence 3567888866632 22 3578899999999876421 11111122 2333444444332232 246899999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHh-ccccccc-cccCccceeEEeecCCCC-Cc----cC-CCCC---
Q 013521 146 SDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKFL-KETGKYRNIVYMNCRPEN-NF----FP-DLST--- 211 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~-~~~~~~~~v~~v~~~~~~-~~----~~-~~~~--- 211 (441)
+|... + .........|+....+|++....+... +...... ........+..++..... +. .. .++.
T Consensus 112 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~ 191 (421)
T PRK06777 112 EAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFK 191 (421)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHH
Confidence 99886 4 222334467888999999975544432 2110000 000000112222222110 00 00 0111
Q ss_pred ----CCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC
Q 013521 212 ----TSRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285 (441)
Q Consensus 212 ----~~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 285 (441)
.+++.+|++ .| ++..|. ++|.+.+++|.++|++||+++|.||+|..|...+.+.+...++-.+| +.++|
T Consensus 192 ~~~~~~~iaavi~-Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pD----iv~~s 266 (421)
T PRK06777 192 ADIAPDQVAAILL-EPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPD----LITMA 266 (421)
T ss_pred hccCCCceEEEEE-CCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCC----EEeee
Confidence 134556554 55 788885 68999999999999999999999999998766554333333332344 23799
Q ss_pred cccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 286 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
|.++ +|+|+||++++++++ +.+.........+.+++.+.++.+.|+... + +.+.++.+++.+++.+.|
T Consensus 267 K~l~-~G~pigav~~~~~i~--------~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~-~--~~l~~~~~~~g~~l~~~L 334 (421)
T PRK06777 267 KSLG-GGMPISAVVGRAEVM--------DAPAPGGLGGTYAGNPLAVAAALAVLDVIA-E--EKLCQRALILGAHLVEVL 334 (421)
T ss_pred hhhc-CCCceEEEEEcHHHH--------hccCCCCCCCCCCcCHHHHHHHHHHHHHHH-h--ccHHHHHHHHHHHHHHHH
Confidence 9998 999999999998773 333222233445578999999999996211 1 456677777778887777
Q ss_pred HhC----C-CeeeCCCCceEEEEEcC----CCChHHHHHHH---HHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHH
Q 013521 366 QSL----G-LKVNGGKNAPYVWVQFP----GSSSWDVFAEI---LEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYIS 431 (441)
Q Consensus 366 ~~~----g-~~~~~~~~~~~~~~~~~----~~~~~~~~~~l---l~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~ 431 (441)
+++ + +....+.+.++ .+.+. +..+.++...+ +.++||.+.|+..|+ +++||+. ..++++++
T Consensus 335 ~~l~~~~~~i~~vrg~G~~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g----~~lr~~ppl~i~~~~i~ 409 (421)
T PRK06777 335 EKAKASCPAIVDIRARGSMV-AVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHG----NVIRFLYPLTIPDAQFS 409 (421)
T ss_pred HHHHHhCCCeEEecCceEEE-EEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCC----CEEEEeCCCCCCHHHHH
Confidence 764 2 22234444444 43332 11122333332 345699999987654 5899996 56899999
Q ss_pred HHHHHHHhhC
Q 013521 432 EACRRLKNFL 441 (441)
Q Consensus 432 ~~l~~l~~~l 441 (441)
+++++|.+++
T Consensus 410 ~~~~~l~~~l 419 (421)
T PRK06777 410 KALNILTRLL 419 (421)
T ss_pred HHHHHHHHHH
Confidence 9999998864
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-18 Score=162.39 Aligned_cols=324 Identities=16% Similarity=0.168 Sum_probs=224.6
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHHHHHH-HHHhcCCCCE
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG-DEIFISDGAQSDISR-LQMLLGSNVT 160 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~al~~-l~~l~~~gd~ 160 (441)
+.+.++.++++|.+ +..++..+ .+..+-+.+.+.+..-++.+. +-++++++++.++.. +.++++|||+
T Consensus 13 P~~v~~~V~~am~~--------~~~~h~s~--~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdk 82 (383)
T COG0075 13 PVPVPPRVLLAMAR--------PMVGHRSP--DFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDK 82 (383)
T ss_pred CCCCCHHHHHHhcC--------CCCCCCCH--HHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCe
Confidence 34577888888877 44444433 345555555555555556664 556677777888987 8999999999
Q ss_pred EEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-----CCCCCCccEEEEcCCCCccccCCCH
Q 013521 161 VAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-----LSTTSRTDIIFFCSPNNPTGHAATW 233 (441)
Q Consensus 161 Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-----~~~~~~~~~v~i~~p~NPtG~~~~~ 233 (441)
|++...+.++ +.++++.+| .+++.+...+...+.++ +++.++.++|.+++...+||+..|
T Consensus 83 VLv~~nG~FG~R~~~ia~~~g------------~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp- 149 (383)
T COG0075 83 VLVVVNGKFGERFAEIAERYG------------AEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP- 149 (383)
T ss_pred EEEEeCChHHHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCc-
Confidence 9999988877 467777787 58888887765444443 233567889999899999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc------
Q 013521 234 QQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS------ 307 (441)
Q Consensus 234 ~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~------ 307 (441)
+++|+++|++||.++|+|.+-+. ++.+..+- .++.++++++..|.++. .-.+|++..+++.+..
T Consensus 150 --l~~I~~~~k~~g~l~iVDaVsS~---Gg~~~~vd----~wgiDv~itgSQK~l~~-PPGla~v~~S~~a~e~~~~~~~ 219 (383)
T COG0075 150 --LKEIAKAAKEHGALLIVDAVSSL---GGEPLKVD----EWGIDVAITGSQKALGA-PPGLAFVAVSERALEAIEERKH 219 (383)
T ss_pred --HHHHHHHHHHcCCEEEEEecccC---CCcccchh----hcCccEEEecCchhccC-CCccceeEECHHHHHHHhcCCC
Confidence 89999999999999999998772 22233332 24566999999999974 3458898888876521
Q ss_pred --CCchhHHHHHHHHh--hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC---CceE
Q 013521 308 --NGYPVIKDFNRIVC--TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK---NAPY 380 (441)
Q Consensus 308 --~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~ 380 (441)
...++.+....+.. ....+++.....+..++|+.-..+.++.+.++++++.+.+++.++.+|++....+ ....
T Consensus 220 ~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tv 299 (383)
T COG0075 220 PSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTV 299 (383)
T ss_pred CceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCce
Confidence 11222222222222 2233344444454555554322345799999999999999999999999887621 1234
Q ss_pred EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-e-cCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-F-GHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~-~~~~~~~~~l~~l~~~l 441 (441)
..+.+| +.++.+....+++++|+.+.+|. ++.....+||+. + .+..++..++.+|..+|
T Consensus 300 ta~~~P~g~~~~~~~~~~~~~~g~~i~gg~--~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L 361 (383)
T COG0075 300 TAIKVPEGVDDKKVRRALLKEYGVEIAGGQ--GPLKGKIFRIGHMGNVRPEDVLAALAALEAAL 361 (383)
T ss_pred EEEECCCCCCcHHHHHHHHHhCCEEecccc--cccCccEEEEecCccCCHHHHHHHHHHHHHHH
Confidence 556666 44555555678888899998874 455678999995 3 37889999999887753
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-19 Score=171.64 Aligned_cols=280 Identities=16% Similarity=0.118 Sum_probs=174.9
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHh----HHHHhcccccccccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYID----TSVIVGQAGKFLKET 188 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~~ 188 (441)
+-..+|++++|++. |.+ ..+++++| +.|+.+ +..++++||+|+++.+.|.+... .+...|
T Consensus 63 p~~~~le~~lA~l~----g~~-~av~~~sG-~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G--------- 127 (389)
T PRK05968 63 PTVRAFEEMLAKLE----GAE-DARGFASG-MAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMG--------- 127 (389)
T ss_pred hhHHHHHHHHHHHh----CCC-cEEEECCH-HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC---------
Confidence 34678999999986 543 44555555 568876 67788999999999999987543 334445
Q ss_pred CccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc
Q 013521 189 GKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI 268 (441)
Q Consensus 189 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~ 268 (441)
++++.++.++.+.+.. ..+++++|++++|+||+ ++..++++|+++|++||+++|+|++|....... + +
T Consensus 128 ---~~v~~vd~~d~~~l~~---~i~~tklV~ie~pt~~~---~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~-p--~ 195 (389)
T PRK05968 128 ---VEVDYVDGRDEEAVAK---ALPGAKLLYLESPTSWV---FELQDVAALAALAKRHGVVTMIDNSWASPVFQR-P--I 195 (389)
T ss_pred ---ceEEEeCCCCHHHHHH---hcccCCEEEEECCCCCC---CcHHHHHHHHHHHHHcCCEEEEECCCcchhccC-c--h
Confidence 4777776542111111 12578999998766665 555779999999999999999999997644322 2 2
Q ss_pred cccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHh-hhcCCCcHHHHHHHHHhcCCCcHHH
Q 013521 269 YEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVC-TCFNGASNIVQAGGLACLSPDGFQA 346 (441)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~ 346 (441)
.. +..+++.|+||.++.+| ++.|+++++++++ +++..... ......+++.+..+...|+ .
T Consensus 196 -~~----g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~--------~~l~~~~~~~~g~~~~~~~A~~~l~~L~-----t 257 (389)
T PRK05968 196 -TL----GVDLVIHSASKYLGGHSDTVAGVVAGSKEHI--------ARINAEAYPYLGAKLSPFEAWLLLRGLR-----T 257 (389)
T ss_pred -hc----CCcEEEeeccccccCCCCeEEEEEEECHHHH--------HHHHHHHHHhCCCCCChHHHHHHHcccC-----c
Confidence 11 22488889999998644 5789998887763 44443222 2223355555444333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCee-eCC-----------CCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC
Q 013521 347 LRTVIDYYKENAKIIVDAFQSL-GLKV-NGG-----------KNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFG 412 (441)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~-----------~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~ 412 (441)
+..+.++.+++.+.+.+.|+++ ++.. ..| ..|..+.+++++ ....+++..| +..++.++-|..+.
T Consensus 258 l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L-~~~~~~~s~G~~~s 336 (389)
T PRK05968 258 LPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADAL-KLFRLGVSWGGHES 336 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhC-CccEEecCCCCCCc
Confidence 4666667777788888999887 5533 212 113467777763 2333444444 44566666665443
Q ss_pred ---C------------------CCCCeEEEEeec-C-HHHHHHHHHHHHh
Q 013521 413 ---P------------------GGNEHIRVSAFG-H-REYISEACRRLKN 439 (441)
Q Consensus 413 ---~------------------~~~~~iRls~~~-~-~~~~~~~l~~l~~ 439 (441)
+ -.++.||+|++- + ++-++.+-++|.+
T Consensus 337 lv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~ 386 (389)
T PRK05968 337 LVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAA 386 (389)
T ss_pred eeeeCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHH
Confidence 0 115789999854 3 3334444444443
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-19 Score=171.97 Aligned_cols=280 Identities=16% Similarity=0.182 Sum_probs=178.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhH----HHHhccccccccccC
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDT----SVIVGQAGKFLKETG 189 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~~~ 189 (441)
+-..++++.+|++. +.+ +.+++++| +.++.++..++++||+|+++.|.|++.... +...|
T Consensus 54 p~~~~le~~lA~l~----g~~-~~v~~~sG-~~ai~~~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G---------- 117 (390)
T PRK08064 54 PTREALEDIIAELE----GGT-KGFAFASG-MAAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFG---------- 117 (390)
T ss_pred hhHHHHHHHHHHHh----CCC-CeEEECCH-HHHHHHHHHHhCCCCEEEEccCccchHHHHHHHHHHHcC----------
Confidence 34678899999986 655 56777777 457776445789999999999999864433 33355
Q ss_pred ccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc
Q 013521 190 KYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY 269 (441)
Q Consensus 190 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~ 269 (441)
.+++.++.++.+.+...+ .+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..+... .++
T Consensus 118 --~~v~~v~~~d~~~l~~~l--~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~---~~~- 186 (390)
T PRK08064 118 --IEHTFVDMTNLEEVAQNI--KPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQ---KPL- 186 (390)
T ss_pred --CEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCccccc---Cch-
Confidence 478888764211111111 367899999999999999988 788889999999999999998854321 111
Q ss_pred ccCCCcceeEEEecCCcccCC-ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 270 EIPGAREVAIEISSFSKFAGF-TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 270 ~~~~~~~~~i~i~S~SK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
.+ +.++++.|+||.++. +|...|++++.++.+ .+.+...+..... ....+.+.. .+ .+.+.+.
T Consensus 187 ~~----g~Divv~S~tK~~~G~~~~laG~~v~~~~~~-------~~~l~~~~~~~g~--~~~~~~a~l-~~--~gl~tl~ 250 (390)
T PRK08064 187 DL----GADVVLHSATKFLAGHSDVLAGLAVVKDEEL-------AQKLYFLQNSFGA--VLGVQDCWL-VL--RGLKTLH 250 (390)
T ss_pred hh----CCcEEEeecceeccCCccceeEEEEeCCHHH-------HHHHHHHHHhcCC--CCCHHHHHH-HH--cccCcHH
Confidence 22 235889999999852 345668877754332 4555544443222 222333333 22 3444566
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CC-eeeCC----------------CCceEEEEEcCCCChHHHHHHHHHhcCe---EEeC
Q 013521 349 TVIDYYKENAKIIVDAFQSL-GL-KVNGG----------------KNAPYVWVQFPGSSSWDVFAEILEKTHI---LTIP 407 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~-g~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~v~p 407 (441)
.+.++..++...+.+.|+++ .+ +++-| ..|..+.+++.+ .+.+..+++..++ .++-
T Consensus 251 ~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~---~~~~~~f~~~l~l~~~~~s~ 327 (390)
T PRK08064 251 VRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS---EEAVRQFVSHVKLPVFAVSL 327 (390)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC---HHHHHHHHHhCCcceEcccC
Confidence 77788888889999999876 22 11111 124467777753 3345666777677 4555
Q ss_pred CCCc------------CC---------CCCCeEEEEeec--CHHHHHHHHHHHHh
Q 013521 408 GSGF------------GP---------GGNEHIRVSAFG--HREYISEACRRLKN 439 (441)
Q Consensus 408 g~~f------------~~---------~~~~~iRls~~~--~~~~~~~~l~~l~~ 439 (441)
|..+ .. -.++.||+|++- .++.++.+.++|++
T Consensus 328 G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~ 382 (390)
T PRK08064 328 GAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSY 382 (390)
T ss_pred CCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 5211 10 125789999754 45556666666654
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-19 Score=174.01 Aligned_cols=164 Identities=17% Similarity=0.214 Sum_probs=121.3
Q ss_pred CCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH----HHHhcccc
Q 013521 108 KGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT----SVIVGQAG 182 (441)
Q Consensus 108 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~ 182 (441)
.+| +.+-..+|++.+|+++ +. +..++++++++++.. +..++++||+|++..+.|++.... +...|
T Consensus 52 sr~-~~p~~~~le~~lA~l~----g~--~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G--- 121 (418)
T TIGR01326 52 SRL-MNPTTDVLEQRIAALE----GG--VAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLG--- 121 (418)
T ss_pred ECC-CChhHHHHHHHHHHHh----CC--CeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcC---
Confidence 344 3445688999999986 43 567888888888886 677889999999999999775433 34455
Q ss_pred ccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC
Q 013521 183 KFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD 262 (441)
Q Consensus 183 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~ 262 (441)
.+++.++.++.+.+...+ .+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+....
T Consensus 122 ---------~~v~~v~~~d~~~l~~~l--~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~- 186 (418)
T TIGR01326 122 ---------IEVRFVDPDDPEEFEKAI--DENTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYL- 186 (418)
T ss_pred ---------cEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhc-
Confidence 477777753111111111 357899999999999999998 88999999999999999999974211
Q ss_pred CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 263 PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
..++ ..+.++++.|+||.++.+|+|+||++++++
T Consensus 187 --~~~l-----~~g~Divv~S~sK~l~g~G~~lGg~v~~~~ 220 (418)
T TIGR01326 187 --CRPI-----DHGADIVVHSATKYIGGHGTAIGGVIVDGG 220 (418)
T ss_pred --CCch-----hcCCeEEEECccccccCCccceEEEEEecc
Confidence 1111 123469999999999988999999999653
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=178.98 Aligned_cols=340 Identities=11% Similarity=0.073 Sum_probs=200.0
Q ss_pred CCCCeEEeCCCCCCC---CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDTTQ---PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~---~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|.... ..+|.+.+++.+.+.++.. ....+ ......+|.+.++++. + .+.+++++++++
T Consensus 73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~--~~~~~-~~~~~~~la~~L~~~~----~--~~~~~f~~SGse 143 (474)
T PLN02624 73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTL--SSRAF-YNDKFPEFAEYLTSMF----G--YDMVLPMNTGAE 143 (474)
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCC--ccccc-CCHHHHHHHHHHHhhc----C--CCeEEEeCChHH
Confidence 356788887764322 2489999999999986431 11122 2334566666666653 3 368888999989
Q ss_pred HHHH-HH--Hhc---C----CCC-EEEEeCCCchhhHhHHHHhcccc-ccccccCccceeEEeecCCCCCccCCCC-CCC
Q 013521 147 DISR-LQ--MLL---G----SNV-TVAVQDPSFPAYIDTSVIVGQAG-KFLKETGKYRNIVYMNCRPENNFFPDLS-TTS 213 (441)
Q Consensus 147 al~~-l~--~l~---~----~gd-~Vlv~~p~y~~~~~~~~~~g~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~~ 213 (441)
|... +. ... + +++ .|+...-+|++....+....... ...........+..++..+.+.+...++ ...
T Consensus 144 A~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 223 (474)
T PLN02624 144 GVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGD 223 (474)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCC
Confidence 8875 42 211 1 133 57777788888643333222110 0000000001223333321111110011 124
Q ss_pred CccEEEEcCCCCccccCCCHH-HHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQ-QLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~-~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
++++|++..++|++|.+++.+ .+++|.++|++||+++|.||+|..+...+.........-.+| +.++||.+|.++
T Consensus 224 ~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pD----iv~lsK~lggG~ 299 (474)
T PLN02624 224 RIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPD----VVILGKALGGGV 299 (474)
T ss_pred CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCC----EEEecccccCCC
Confidence 677888878899999998777 599999999999999999999987654443221111111223 334799999666
Q ss_pred ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC----
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL---- 368 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 368 (441)
+++|+++++++++ ..+.......+.+.+++.+.++.+.++.... ..+.+...++.+.+.+.|+++
T Consensus 300 ~pigav~~~~~i~--------~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~---~~l~~~~~~~~~~l~~~L~~l~~~~ 368 (474)
T PLN02624 300 IPVSAVLADKDVM--------LCIKPGEHGSTFGGNPLASAVAMAALQVVQD---EKLAERSAKLGQELRDQLQKIQKQF 368 (474)
T ss_pred CcceeeeecHHHH--------hHhccCCcCCCCCCCHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999987763 3333222233345788888888888862111 123344444555555555443
Q ss_pred C--CeeeCCCCceEEEEEcCC-----CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHh
Q 013521 369 G--LKVNGGKNAPYVWVQFPG-----SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKN 439 (441)
Q Consensus 369 g--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~ 439 (441)
. +....+ .|.++.+.+.. ....++...++ ++||.+.|+ +.++|||+. ..+++++++++++|.+
T Consensus 369 ~~~i~~vrg-~G~~~~i~l~~~~~~~~~a~~~~~~L~-e~GV~v~p~------~~~~lR~~p~l~~t~e~id~~l~~L~~ 440 (474)
T PLN02624 369 PKLIKEVRG-RGLLNAVVLNSPKLGPVSAYDVCLKLK-ERGLLAKPT------HDTIIRLAPPLSISEDELQECSKALSD 440 (474)
T ss_pred CCceEEEEe-eEEEEEEEecCCCcChHHHHHHHHHHH-hCCeEEecC------CCCEEEEECCccCCHHHHHHHHHHHHH
Confidence 1 222222 35555555532 12345666654 569999885 257899984 6689999999999987
Q ss_pred hC
Q 013521 440 FL 441 (441)
Q Consensus 440 ~l 441 (441)
++
T Consensus 441 ~l 442 (474)
T PLN02624 441 VL 442 (474)
T ss_pred HH
Confidence 63
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-19 Score=175.81 Aligned_cols=339 Identities=11% Similarity=0.089 Sum_probs=203.0
Q ss_pred CCCeEEeCCCCCCCC---CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQP---IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~---~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+++++|+..+-.... .+|.+.+++.+.+..... ....+ ...-..++.+.+++++ + .+.+++++++++|
T Consensus 36 g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~l~~~~----~--~~~~~~~~SGs~A 106 (401)
T TIGR01885 36 GKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTL--SSRAF-YNDVFGEFAEYVTKLF----G--YDKVLPMNTGAEA 106 (401)
T ss_pred CCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccc--ccccc-CCHHHHHHHHHHHhhc----C--CCEEEEeCccHHH
Confidence 467888887643333 479999999998876431 11112 2234456666666653 4 3688888888888
Q ss_pred HHH-HHHh----------cCCCCEEEEeCCCchhh-HhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-CCC
Q 013521 148 ISR-LQML----------LGSNVTVAVQDPSFPAY-IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-TSR 214 (441)
Q Consensus 148 l~~-l~~l----------~~~gd~Vlv~~p~y~~~-~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~~~ 214 (441)
... +... ....+.|+...-+|++. .......+..............+..++..+-..+...+.. .++
T Consensus 107 ~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 186 (401)
T TIGR01885 107 VETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPN 186 (401)
T ss_pred HHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcCCC
Confidence 775 4322 12246788888888864 3333332211000000000012333333211111100111 145
Q ss_pred ccEEEEcCCCCccccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC-CcceeEEEecCCcccCCcc
Q 013521 215 TDIIFFCSPNNPTGHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG-AREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 215 ~~~v~i~~p~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G 292 (441)
..+|++..+++++|.+.+ .+.+++|.++|++||+++|+||+|..+...+.+.+. ...+ .+| ++ ++||.++.++
T Consensus 187 ~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~-~~~~~~~d--i~--~~gK~l~~g~ 261 (401)
T TIGR01885 187 VCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCV-DHENVKPD--IV--LLGKALSGGV 261 (401)
T ss_pred EEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHH-hhcCCCCC--EE--EeeccccCCC
Confidence 667666566999999886 447999999999999999999999776554433222 2222 233 22 4789998555
Q ss_pred ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV 372 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 372 (441)
+|+|+++++++++ +.+.........+.+++++.++.+.|+.... +.+.++.++..+++.+.|++++..+
T Consensus 262 ~~ig~v~~~~~i~--------~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~---~~l~~~~~~~~~~~~~~L~~l~~~~ 330 (401)
T TIGR01885 262 YPVSAVLADDDVM--------LTIKPGEHGSTYGGNPLACAVAVAALEVLEE---EKLAENAEKLGEIFRDQLKKLPKPI 330 (401)
T ss_pred CCcEEEEEcHHHH--------hhccCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhccCCc
Confidence 9999999988763 3332211222334578888888888862211 2344566677888888888774222
Q ss_pred e--CCCCceEEEEEcCCC----ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 373 N--GGKNAPYVWVQFPGS----SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 373 ~--~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
. ....|.+..+.++.. ...++...+. ++||.+.|+. ++.+||+. ..+++++++++++|++++
T Consensus 331 ~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~-~~Gv~v~~~~------~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 331 ITEVRGRGLLNAIVIDESKTGRTAWDLCLKLK-EKGLLAKPTH------GNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred eeEEeecCeeEEEEeccCcchhHHHHHHHHHH-hCCEEEEecC------CCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 1 112455544445421 3456666665 5599998742 56899995 568999999999998864
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=169.83 Aligned_cols=305 Identities=15% Similarity=0.151 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEEeC
Q 013521 88 DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAVQD 165 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv~~ 165 (441)
+...+++.+.+.. +. -| |..++++++++++.+.++. +++++|+|+++|+.+ +..+ +++||+|+++.
T Consensus 11 ~~~~~~~~~~l~~-----~~-~~----g~~~~~~~~e~~la~~~g~--~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~ 78 (375)
T PRK11706 11 GTELDYIQQAMSS-----GK-LC----GDGGFTRRCQQWLEQRFGS--AKVLLTPSCTAALEMAALLLDIQPGDEVIMPS 78 (375)
T ss_pred HHHHHHHHHHHHc-----CC-cc----CCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHhCCCCCCEEEECC
Confidence 4446677776652 11 12 2334666666666554454 699999999999987 4544 68999999999
Q ss_pred CCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEcCCCCccccCCCHHHHHHHH
Q 013521 166 PSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFCSPNNPTGHAATWQQLKKLV 240 (441)
Q Consensus 166 p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~ 240 (441)
|+|+++...+...| .+++.++++++ ++..+++ + .+++++|+++ ||||...+ +++|.
T Consensus 79 ~t~~~~~~~~~~~G------------~~~v~~d~d~~-~~~~d~~~le~~i~~~tk~i~~~---~~~G~~~~---~~~i~ 139 (375)
T PRK11706 79 YTFVSTANAFVLRG------------AKIVFVDIRPD-TMNIDETLIEAAITPKTRAIVPV---HYAGVACE---MDTIM 139 (375)
T ss_pred CCcHHHHHHHHHcC------------CEEEEEecCCC-cCCcCHHHHHHhcCCCCeEEEEe---CCCCCccC---HHHHH
Confidence 99999999999888 58999998865 3444432 2 3578998875 46998877 78999
Q ss_pred HHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecCC--cccCCccceeEEEEeeccccccCCchhHHHHH
Q 013521 241 EFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFN 317 (441)
Q Consensus 241 ~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 317 (441)
++|++||++||+|++|+.+. +++. ++..+. .+.+.||+ |.++ +|.+.+++..++++ .+++.
T Consensus 140 ~la~~~~i~vIeD~a~a~g~~~~~~--~~g~~~-----~~~~~Sf~~~K~l~-~g~gG~~~~~~~~~--------~~~~~ 203 (375)
T PRK11706 140 ALAKKHNLFVVEDAAQGVMSTYKGR--ALGTIG-----HIGCFSFHETKNYT-AGEGGALLINDPAL--------IERAE 203 (375)
T ss_pred HHHHHcCCEEEEECccccccccCCe--eeecCc-----CEEEEeCCCCcccc-ccCCeEEEECCHHH--------HHHHH
Confidence 99999999999999998655 2322 222221 13344444 9997 78887787766665 33333
Q ss_pred HHHhhh-----------------cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC----Ceee-CC
Q 013521 318 RIVCTC-----------------FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG----LKVN-GG 375 (441)
Q Consensus 318 ~~~~~~-----------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~-~~ 375 (441)
.++... ..+.+...+....++.. ...+.+++..++.+++.+.+.+.|+++. +.+. .+
T Consensus 204 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~-~ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~ 282 (375)
T PRK11706 204 IIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLW-AQLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIP 282 (375)
T ss_pred HHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCC
Confidence 333211 01122211111111111 1234456666666677777788887652 3322 12
Q ss_pred CC----ceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCC----C---cCC-----C--------CCCeEEEEee--cCHH
Q 013521 376 KN----APYVWVQFPG-SSSWDVFAEILEKTHILTIPGS----G---FGP-----G--------GNEHIRVSAF--GHRE 428 (441)
Q Consensus 376 ~~----~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~----~---f~~-----~--------~~~~iRls~~--~~~~ 428 (441)
.+ ..++|+.++. .+..++.+.|. ++||.+.... . |.. . ....+-|-+. -+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~-~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~ 361 (375)
T PRK11706 283 DDCKHNAHMFYIKLRDLEDRSALINFLK-EAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDV 361 (375)
T ss_pred CCCceeeEEEEEEECCcCCHHHHHHHHH-HCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHH
Confidence 12 2356777753 34456666555 4599876331 1 000 0 0233444443 2689
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
+++..++.|++++
T Consensus 362 ~~~~i~~~i~~~~ 374 (375)
T PRK11706 362 EQRTVIDTILEFF 374 (375)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998753
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-19 Score=173.19 Aligned_cols=219 Identities=21% Similarity=0.260 Sum_probs=146.7
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHH----Hhcccc
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAG 182 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~ 182 (441)
.+.|+.. |.+ .++++.+++.+..+ .++.++++++++++.++..++++||+|+++.|.|+++...+. ..|
T Consensus 124 ~~~Y~r~-gnp-t~~aLE~~lA~leg--~e~ai~~~SG~aAi~~il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G--- 196 (464)
T PLN02509 124 PYDYTRS-GNP-TRDALESLLAKLDK--ADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG--- 196 (464)
T ss_pred CCccCCC-CCH-HHHHHHHHHHHHhC--CCEEEEeCcHHHHHHHHHHHhCCCCEEEEcCCchhhHHHHHHHHHHHCC---
Confidence 3467654 543 57777777665333 456677777788888766788999999999999998764443 345
Q ss_pred ccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 183 KFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 183 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
++++.++..+. .++++ .+++++|++++|+||||.+.+ +++|+++|++||+++|+|++|....
T Consensus 197 ---------~~v~~vd~~d~----e~l~~ai~~~TklV~lesPsNPtG~i~D---l~~I~~lAk~~g~~lIVD~A~a~~~ 260 (464)
T PLN02509 197 ---------VVVKRVNTTNL----DEVAAAIGPQTKLVWLESPTNPRQQISD---IRKIAEMAHAQGALVLVDNSIMSPV 260 (464)
T ss_pred ---------eEEEEeCCCCH----HHHHHhCCcCCeEEEEECCCCCCCCHHH---HHHHHHHHHHcCCEEEEECCccccc
Confidence 46666654321 12222 367899999999999998744 9999999999999999999987432
Q ss_pred cCCCCCcccccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhc
Q 013521 261 TDPSPRSIYEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL 339 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 339 (441)
.. .++ .. +.++++.|++|.++.+| .-.|++++.++.+ .+.+...+.......+++... ..+
T Consensus 261 ~~---~pl-~~----gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l-------~~~~~~~~~~~g~~l~p~~A~---l~l 322 (464)
T PLN02509 261 LS---RPL-EL----GADIVMHSATKFIAGHSDVMAGVLAVKGEKL-------AKEVYFLQNSEGSGLAPFDCW---LCL 322 (464)
T ss_pred cC---Chh-hc----CCcEEEecCcccccCCCccceeEEEeccHHH-------HHHHHHHHHhcCCCcCHHHHH---HHH
Confidence 21 111 11 23489999999987423 3468888755543 233333333322333444322 222
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 340 SPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
.+.+.+..+.++.+++++.+.+.|+++
T Consensus 323 --r~L~tL~~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 323 --RGIKTMALRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred --hhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 345666788889999999999999987
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-18 Score=167.80 Aligned_cols=342 Identities=12% Similarity=0.076 Sum_probs=201.0
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..|- ..+ ..+|.+.+++.+.+.+... ....| ...+.+.++|+.|.+..+..-+.+++++++++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~--~~~~~----~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsE 112 (443)
T PRK08360 39 EGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIH--YTPIY----GFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSD 112 (443)
T ss_pred CCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccC--ccccc----cCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHH
Confidence 456788887663 222 3678999999998875321 11112 22334455666554433333368999999999
Q ss_pred HHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHh-ccccccccccCccceeEEeecCCCCC--c----------cCC--
Q 013521 147 DISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKFLKETGKYRNIVYMNCRPENN--F----------FPD-- 208 (441)
Q Consensus 147 al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~v~~v~~~~~~~--~----------~~~-- 208 (441)
|+.. + .........|+....+|++....+... +....+...-.....+..++...... + ..+
T Consensus 113 Ave~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (443)
T PRK08360 113 ANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYI 192 (443)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHH
Confidence 9986 4 222344567888888998864333322 21100000000001233333321100 0 000
Q ss_pred ---CCC---CCCccEEEEcCC-CCccccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEE
Q 013521 209 ---LST---TSRTDIIFFCSP-NNPTGHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIE 280 (441)
Q Consensus 209 ---~~~---~~~~~~v~i~~p-~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~ 280 (441)
++. .+++++|++ .| +||+|.+++ .+.+++|.++|++||+++|+||+|..|...+...+...+.-.+|
T Consensus 193 ~~~l~~~~~~~~iAAvi~-eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pD---- 267 (443)
T PRK08360 193 KEKFEGEVYAEGVAALFA-EPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPD---- 267 (443)
T ss_pred HHHHHhccCCCCeEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCC----
Confidence 111 246777666 57 799999887 55799999999999999999999998765543222222222334
Q ss_pred EecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 013521 281 ISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKI 360 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (441)
+.++||.++ +|+|+||+++++++. +.+.........+.+++.+.++.+.++.-.. +...++.+++-++
T Consensus 268 iitlsK~l~-~G~pigav~~~~~i~--------~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~---~~l~~~~~~~g~~ 335 (443)
T PRK08360 268 IITLGKPLG-GGLPISATIGRAEIM--------DSLPPLAHAFTLSGNPVASAAALAVIEEIEE---KNLLKRAEKLGNY 335 (443)
T ss_pred EEEeccccc-CCceeEEEEEcHHHH--------hhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHH
Confidence 236899998 999999999988773 3343222233445678888888888863111 2234455555555
Q ss_pred HHHHHHhC----CCeeeCCCCceEEEEEcCCC---------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eec
Q 013521 361 IVDAFQSL----GLKVNGGKNAPYVWVQFPGS---------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFG 425 (441)
Q Consensus 361 l~~~L~~~----g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~ 425 (441)
+.+.|+++ ++.......|.++-+++... ....+...++ ++||.+.+.. .+.+|++ +..
T Consensus 336 l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~lr~~P~l~~ 408 (443)
T PRK08360 336 TKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAW-ELGLIVTFFS------GNVLRIQPPLTI 408 (443)
T ss_pred HHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHH-HCCeEEeecC------CCEEEEeCCCCC
Confidence 55555443 32111112455665655311 1123445555 4599986531 3679995 567
Q ss_pred CHHHHHHHHHHHHhhC
Q 013521 426 HREYISEACRRLKNFL 441 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~l 441 (441)
+++++++++++|.+++
T Consensus 409 t~~~id~~~~~l~~~l 424 (443)
T PRK08360 409 EKEVLDEGLDILEEAI 424 (443)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998764
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=169.36 Aligned_cols=216 Identities=19% Similarity=0.232 Sum_probs=143.3
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHH-HhccccccccccCcc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSV-IVGQAGKFLKETGKY 191 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~ 191 (441)
.+-..+|++.+|++. +.+ ..+++.+| +.++.++..++++||+|+++.|+|++....+. .+...|
T Consensus 49 ~p~~~~Le~~lA~l~----g~~-~~~~~~sG-~aai~~~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G--------- 113 (377)
T PRK07671 49 NPTRAALEELIAVLE----GGH-AGFAFGSG-MAAITAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFG--------- 113 (377)
T ss_pred ChHHHHHHHHHHHHh----CCC-ceEEeCCH-HHHHHHHHHHhCCCCEEEECCCccchHHHHHHHHHhcCC---------
Confidence 445788999999985 543 45666666 56777766788999999999999985544332 222111
Q ss_pred ceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc
Q 013521 192 RNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 192 ~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
++++.++..+...+...+ .+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|...... .| + ..
T Consensus 114 ~~v~~v~~~d~~~l~~ai--~~~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~-~p--~-~~ 184 (377)
T PRK07671 114 IEHTFVDTSNLEEVEEAI--RPNTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQ-SP--I-SL 184 (377)
T ss_pred eEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccC-Ch--h-hh
Confidence 477777643211111111 368899999999999999987 888899999999999999999743222 12 2 12
Q ss_pred CCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHH
Q 013521 272 PGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTV 350 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 350 (441)
+..+++.|+||.++.++ .-.|+++++++.+ .+++...+.......++..... ++ .+.+.+..+
T Consensus 185 ----g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l-------~~~~~~~~~~~g~~~~~~~a~l---~~--~~l~tl~~R 248 (377)
T PRK07671 185 ----GADIVLHSATKYLGGHSDVVAGLVVVNSPEL-------AEDLHFVQNSTGGILGPQDSWL---LL--RGLKTLGIR 248 (377)
T ss_pred ----CCeEEEecCcccccCCccceeEEEEeCcHHH-------HHHHHHHHHhhcCCCCHHHHHH---HH--cCcChHHHH
Confidence 22499999999997433 3457777755433 4555555554434344443222 22 223445667
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 013521 351 IDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 351 ~~~~~~~~~~l~~~L~~~ 368 (441)
.++.+++.+.+.+.|+++
T Consensus 249 ~~~~~~na~~la~~L~~~ 266 (377)
T PRK07671 249 MEEHETNSRAIAEFLNNH 266 (377)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 888889999999999987
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=169.07 Aligned_cols=207 Identities=16% Similarity=0.222 Sum_probs=145.1
Q ss_pred cHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhccccccccccCc
Q 013521 116 NMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLKETGK 190 (441)
Q Consensus 116 ~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~~ 190 (441)
...|++++|++. + .+++++++|+++|+.. +..++++||+|++++|.|++....+ ...|
T Consensus 52 ~~~lE~~lA~l~----g--~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~g----------- 114 (377)
T TIGR01324 52 HFALQDAMCELE----G--GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMG----------- 114 (377)
T ss_pred HHHHHHHHHHHh----C--CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcC-----------
Confidence 368999999985 4 4689999999999997 6788999999999999998765543 2334
Q ss_pred cceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc
Q 013521 191 YRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI 268 (441)
Q Consensus 191 ~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~ 268 (441)
+++..++...+ .++++ .+++|+|++++|+||+|.+.+ +++|+++|+++|+++|+|++|+..... .++
T Consensus 115 -i~v~~~d~~~~----e~l~~~i~~~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a~g~~~---~pl 183 (377)
T TIGR01324 115 -VDITYYDPLIG----EDIATLIQPNTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWAAGLLF---KPL 183 (377)
T ss_pred -cEEEEECCCCH----HHHHHhcCCCceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCcccccc---Ccc
Confidence 36666543221 12222 368999999999999987765 999999999999999999999842221 111
Q ss_pred cccCCCcceeEEEecCCcccCCc-cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHH
Q 013521 269 YEIPGAREVAIEISSFSKFAGFT-GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQAL 347 (441)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 347 (441)
. .+..+++.|++|.++.+ +...|+++++++.+ +.+...........++... ..++ .+.+.+
T Consensus 184 -~----~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~--------~~l~~~~~~~G~~l~p~~a---~~~~--rgl~tl 245 (377)
T TIGR01324 184 -E----HGVDISIQAGTKYLVGHSDIMIGTVVANARTW--------DQLREHSYLMGQMVDADDA---YTTL--RGLRTL 245 (377)
T ss_pred -c----cCceEEEecCceeccCCCCceEEEEEeCHHHH--------HHHHHHHHHhCCCCCHHHH---HHHH--hhhhhH
Confidence 1 23359999999999633 46789998877652 3333333333333444332 2222 344556
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 013521 348 RTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~ 368 (441)
..+.++.+++...+.+.|+++
T Consensus 246 ~~R~~~~~~~a~~la~~L~~~ 266 (377)
T TIGR01324 246 GVRLKQHQESSLAIAKWLSEQ 266 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 667788888888899999887
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=169.89 Aligned_cols=336 Identities=11% Similarity=0.106 Sum_probs=202.3
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|- ..+ ..+|.+.+++.+.+.+... ++.. -..+....+++.|....+. .+.+++++++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~------~~~~-~~~~~~~~la~~L~~~~~~-~~~v~f~~sGse 109 (408)
T PRK04612 38 QGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWH------TSNV-FYSAPPLKLAEELVTASRF-AEKVFLCNSGTE 109 (408)
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc------cccc-cCCHHHHHHHHHHHhhCCC-CCEEEEcCchHH
Confidence 356788887663 222 3678899999998875321 1111 1123344555555432221 268999999999
Q ss_pred HHHH-HH--Hhc----C--C-CCEEEEeCCCchhhHhHHHHh-cccc---ccccccCccceeEEeecCCCCCccCCCCCC
Q 013521 147 DISR-LQ--MLL----G--S-NVTVAVQDPSFPAYIDTSVIV-GQAG---KFLKETGKYRNIVYMNCRPENNFFPDLSTT 212 (441)
Q Consensus 147 al~~-l~--~l~----~--~-gd~Vlv~~p~y~~~~~~~~~~-g~~~---~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~ 212 (441)
|... +. ... + + ..+|+....+|++....+... +... .+.+.. ..+..++..+.+.+...+ .
T Consensus 110 A~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~---~~~~~~~~~d~~~l~~~~-~- 184 (408)
T PRK04612 110 ANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLP---GGFRYVDFNDVEALEAAM-A- 184 (408)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCC---CCceEcCCCCHHHHHHhh-C-
Confidence 9885 42 222 1 1 246888999999875443332 2110 000000 012222221100010001 1
Q ss_pred CCccEEEEcCCCCccccCCC--HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSPNNPTGHAAT--WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~--~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
++..+.++..|.+++|-+++ .+.+++|.++|++||+++|+||+|..+...+.. .... ..+.+..+.||||.++
T Consensus 185 ~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~--~a~~--~~~~~pdi~t~~K~l~- 259 (408)
T PRK04612 185 GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTL--FAHW--QEQVTPDIVTLAKALG- 259 (408)
T ss_pred CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCch--hhhh--hcCCCCCEEEEcchhc-
Confidence 23455677799888887765 678999999999999999999999976554422 1111 1234567889999998
Q ss_pred ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-- 368 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 368 (441)
+|+|+||+++++++. +.+.........+.+++.+.++.+.|+.-. + +++.++.+++.+++.+.|+++
T Consensus 260 ~G~piga~~~~~~~~--------~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~-~--~~l~~~~~~~g~~l~~~l~~l~~ 328 (408)
T PRK04612 260 GGFPIGAMLAGPKVA--------ETMQFGAHGTTFGGNPLAAAVARVALRKLA-S--PQIAANVARQSAALRAGLEALNA 328 (408)
T ss_pred CCCceEEEEECHHHH--------hhhcCCCcCCCCCCCHHHHHHHHHHHHHHH-h--ccHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987763 333322223344578899998888886211 1 345566666667777766654
Q ss_pred --CCeeeCCCCceEEEEEcCC--C-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 369 --GLKVNGGKNAPYVWVQFPG--S-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 369 --g~~~~~~~~~~~~~~~~~~--~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
++......-|.++-+.+.. . ...++... +.++||.+.|. +.+.+|+. +..+++++++++++|.+++
T Consensus 329 ~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~-l~~~Gvlv~~~------g~~~lRl~Ppl~it~eeid~~l~~l~~~l 401 (408)
T PRK04612 329 EFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDL-AAEHGLLLLQA------GPDVLRFVPALNLTDAELADGLARLRLAL 401 (408)
T ss_pred hCCCeeeeeccceEEEEEecCchhhHHHHHHHH-HHHCCeEEeeC------CCCEEEEcCCccCCHHHHHHHHHHHHHHH
Confidence 2221111246666676642 1 12344454 44569999763 34789998 4568999999999998764
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=171.38 Aligned_cols=220 Identities=17% Similarity=0.235 Sum_probs=145.8
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH----HHHhccccccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT----SVIVGQAGKFLKE 187 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~ 187 (441)
.+-...|.+.+|++. + .+..++++++++|+.. +..++++||+|+++.+.|++.... +...|
T Consensus 63 ~p~~~~Le~~lA~le----g--~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~G-------- 128 (431)
T PRK08248 63 NPTTDVFEKRIAALE----G--GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLG-------- 128 (431)
T ss_pred CchHHHHHHHHHHHh----C--CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCC--------
Confidence 345677888888885 4 3577788888889886 778899999999999999775443 33455
Q ss_pred cCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCc
Q 013521 188 TGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS 267 (441)
Q Consensus 188 ~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~ 267 (441)
++++.++..+.+.+...+ .+++++|++++|+||||.+++ +++|+++|+++|+++|+|++|..- .. ..+
T Consensus 129 ----v~v~~vd~~d~e~l~~ai--~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~-~~--~~p 196 (431)
T PRK08248 129 ----ITVKFVDPSDPENFEAAI--TDKTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASP-YL--LRP 196 (431)
T ss_pred ----EEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcc-cc--CCh
Confidence 578888764211211111 257899999999999999999 779999999999999999998621 11 112
Q ss_pred ccccCCCcceeEEEecCCcccCCccceeEEEEeecc-ccccC--C--------c--------h-------hHHHHHHHHh
Q 013521 268 IYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE-LRYSN--G--------Y--------P-------VIKDFNRIVC 321 (441)
Q Consensus 268 ~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~-~~~~~--~--------~--------~-------~~~~~~~~~~ 321 (441)
+ . .+.++++.|++|.+|.+|.++|++++... ..... . . . ..+.......
T Consensus 197 l-~----~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (431)
T PRK08248 197 I-E----HGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLR 271 (431)
T ss_pred h-H----cCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHH
Confidence 2 1 23458999999999999999998887432 11000 0 0 0 0001111112
Q ss_pred hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 322 TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 322 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
......+++. + ++...+.+-+..+.++.+++...+.+.|+++
T Consensus 272 ~~G~~l~p~~---a--~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~ 313 (431)
T PRK08248 272 DLGAALSPFN---S--FLLLQGLETLHLRMERHSENALAVAKFLEEH 313 (431)
T ss_pred hcCCCCCHHH---H--HHHhcCcCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 2222233332 1 1222445556777788888999999999987
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-19 Score=173.17 Aligned_cols=341 Identities=11% Similarity=0.068 Sum_probs=202.2
Q ss_pred CCCCeEEeCCCCCCC---CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDTTQ---PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~---~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|.+.. ..+|.+.+++.+.+.+. ...|.+..+..+|.+.+++.+ . ..+.+++++++++
T Consensus 48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~-----~~~~~~~~~~~~la~~L~~~~----~-~~~~v~~~~sGse 117 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKG-----LSFGAPTELEVELAELVIELV----P-SIEMVRMVNSGTE 117 (426)
T ss_pred CCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhC-----CcCCCCCHHHHHHHHHHHHhC----C-CCCEEEEecCHHH
Confidence 456899998875332 47899999999998752 123445556666777777653 2 3578999999999
Q ss_pred HHHH-HHHh--cCCCCEEEEeCCCchhhHhHHHHhcccccc----ccccCcc----ceeEEeecCCCCCccCCCCC-CCC
Q 013521 147 DISR-LQML--LGSNVTVAVQDPSFPAYIDTSVIVGQAGKF----LKETGKY----RNIVYMNCRPENNFFPDLST-TSR 214 (441)
Q Consensus 147 al~~-l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----~~~~~~~----~~v~~v~~~~~~~~~~~~~~-~~~ 214 (441)
|+.. +... ...++.|+..+++|++....+......+.. ....... .....++..+.+.+...+.. ..+
T Consensus 118 A~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~ 197 (426)
T PRK00062 118 ATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDE 197 (426)
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCc
Confidence 9986 4322 334678999999999976443332100000 0000000 00111111100000000111 235
Q ss_pred ccEEEEcCCCCccccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccc
Q 013521 215 TDIIFFCSPNNPTGHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 215 ~~~v~i~~p~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
+.+|++..-+.-+|.+.+ .+.+++|.++|++||+++|.||+|..+..+. ......+.-.+| +.+|||.++ .|+
T Consensus 198 ~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~-~~~~~~~~~~pD----i~~~gK~l~-~G~ 271 (426)
T PRK00062 198 IAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL-GGAQGYYGVTPD----LTTLGKIIG-GGL 271 (426)
T ss_pred EEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC-ccHHHHhCCCcc----hHhhhhHhh-CCC
Confidence 666666522444898876 8889999999999999999999998763322 111111221234 468999998 899
Q ss_pred eeEEEEeeccccccCCchhHHHHH---HHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 294 RLGWTVVPEELRYSNGYPVIKDFN---RIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 294 r~G~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
++|++++++++. +.+. ........+.+++.+.++.+.|+.... +..++.++..+..++.+.+.+.+++
T Consensus 272 p~ga~~~~~~i~--------~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 343 (426)
T PRK00062 272 PVGAFGGRREIM--------EQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAG 343 (426)
T ss_pred cceeeeEHHHHH--------HhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999988763 3332 111223345788888888888862111 2334444444444555555444555
Q ss_pred CeeeCCCCceEEEEEcCCC-----------C---hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHH
Q 013521 370 LKVNGGKNAPYVWVQFPGS-----------S---SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACR 435 (441)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~ 435 (441)
+.......|.++-+.+... + ...+...++ ++||.+.|.. .+.+++++..++++++++++
T Consensus 344 ~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~~ei~~~~~ 416 (426)
T PRK00062 344 IPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAML-DEGVYLAPSQ------FEAGFVSAAHTDEDIEKTLE 416 (426)
T ss_pred CceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHH-HCCeEeecCC------cCceeeeccCCHHHHHHHHH
Confidence 5442222455555544210 1 134555555 4599998742 23467887779999999999
Q ss_pred HHHhhC
Q 013521 436 RLKNFL 441 (441)
Q Consensus 436 ~l~~~l 441 (441)
+|.+++
T Consensus 417 ~l~~~l 422 (426)
T PRK00062 417 AARKAF 422 (426)
T ss_pred HHHHHH
Confidence 998753
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=167.43 Aligned_cols=216 Identities=16% Similarity=0.142 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH---HHHhccccccccccCccc
Q 013521 117 MALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT---SVIVGQAGKFLKETGKYR 192 (441)
Q Consensus 117 ~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~ 192 (441)
..|.+.+|++. +.. ..+++++| ++|+.. +..++++||+|++.++.|++.... +...| +
T Consensus 50 ~~lE~~la~le----g~~-~~v~~ssG-~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G------------~ 111 (397)
T PRK05939 50 AALEAKITKME----GGV-GTVCFATG-MAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLG------------V 111 (397)
T ss_pred HHHHHHHHHHh----CCC-eEEEeCCH-HHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcC------------C
Confidence 48889999875 432 35555555 788886 677899999999999999865443 33445 4
Q ss_pred eeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccC
Q 013521 193 NIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIP 272 (441)
Q Consensus 193 ~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~ 272 (441)
+++.++..+.+.+...+ .+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|.... .+...
T Consensus 112 ~v~~v~~~d~e~l~~~l--~~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~t~a~~~------~~~~~- 179 (397)
T PRK05939 112 EVTMVDATDVQNVAAAI--RPNTRMVFVETIANPGTQVAD---LAGIGALCRERGLLYVVDNTMTSPW------LFRPK- 179 (397)
T ss_pred EEEEECCCCHHHHHHhC--CCCCeEEEEECCCCCCCCHHh---HHHHHHHHHHcCCEEEEECCccccc------ccCcc-
Confidence 78887764211211111 368999999999999998855 9999999999999999999986311 11001
Q ss_pred CCcceeEEEecCCcccCCccceeEEEEeecccccc-CCchh-------------HHHHHH-HHhhhcCCCcHHHHHHHHH
Q 013521 273 GAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS-NGYPV-------------IKDFNR-IVCTCFNGASNIVQAGGLA 337 (441)
Q Consensus 273 ~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~-~~~~~-------------~~~~~~-~~~~~~~~~~~~~~~a~~~ 337 (441)
..+..+++.|+||.++..|.++|++++++..... ..... ...+.. .........++... .
T Consensus 180 -~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a----~ 254 (397)
T PRK05939 180 -DVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAA----H 254 (397)
T ss_pred -ccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHH----H
Confidence 1234699999999999889999998875332100 00000 001110 11112222333331 1
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 338 CLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
++. .+.+.+..+.++..++...+.+.|+++
T Consensus 255 l~~-rgl~tl~~R~~~~~~na~~la~~L~~~ 284 (397)
T PRK05939 255 RIA-IGAETLALRVDRSCSNALALAQFLEAH 284 (397)
T ss_pred HHH-cCcCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 222 445555666677777999999999987
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-18 Score=165.55 Aligned_cols=278 Identities=19% Similarity=0.193 Sum_probs=180.9
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGK 190 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~ 190 (441)
.....++++.+++++ +. +++++++|+++++.. +..+ +++||+|+++.++|.+....+...|
T Consensus 17 ~~~~~~~~~~la~~~----~~--~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g----------- 79 (352)
T cd00616 17 GPKVREFEKAFAEYL----GV--KYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLG----------- 79 (352)
T ss_pred CHHHHHHHHHHHHHh----CC--CeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcC-----------
Confidence 456889999999996 43 578888888999887 5556 5899999999999999988888888
Q ss_pred cceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC
Q 013521 191 YRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP 265 (441)
Q Consensus 191 ~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~ 265 (441)
.+++.++++++ .+..+++. .+++++|+++ ||+|...+ +++|.++|+++|+++|+|++++...... .
T Consensus 80 -~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~-~ 150 (352)
T cd00616 80 -ATPVFVDIDPD-TYNIDPELIEAAITPRTKAIIPV---HLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYK-G 150 (352)
T ss_pred -CeEEEEecCCC-cCCcCHHHHHHhcCcCCeEEEEE---CCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeEC-C
Confidence 58888888652 33333221 3678888875 46999887 7888889999999999999998432211 1
Q ss_pred CcccccCCCcceeEEEecCC--cccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhc---------------CCCc
Q 013521 266 RSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCF---------------NGAS 328 (441)
Q Consensus 266 ~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 328 (441)
..+... . .+.+.||+ |.++ +.+.|+++++++.+ .+.+........ ...+
T Consensus 151 ~~~~~~---~--d~~~~S~~~~K~~~--~~~gg~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (352)
T cd00616 151 RKVGTF---G--DAGAFSFHPTKNLT--TGEGGAVVTNDEEL-------AERARLLRNHGRDRDRFKYEHEILGYNYRLS 216 (352)
T ss_pred EEcccC---c--ceeEEcCCCCCCCc--ccCceEEEECCHHH-------HHHHHHHHHcCCCCCCCccccceeeeccCcC
Confidence 111111 1 26677766 9884 33568888875332 233332221110 1122
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCC-----ceEEEEEcC---CCChHHHHHHHHH
Q 013521 329 NIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKN-----APYVWVQFP---GSSSWDVFAEILE 399 (441)
Q Consensus 329 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~ll~ 399 (441)
.+....+.. ....+++..++.+++.+++.+.|.++ |+++..+.. ...+.+.++ +.+..++.+.|.
T Consensus 217 ~~~aa~~~~-----~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~- 290 (352)
T cd00616 217 EIQAAIGLA-----QLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALK- 290 (352)
T ss_pred HHHHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHH-
Confidence 222221221 12345667777888899999999886 777654322 234555665 345566666654
Q ss_pred hcCeEEeCCCCcCCC----------------C-------CCeEEEEe--ecCHHHHHHHHHHHH
Q 013521 400 KTHILTIPGSGFGPG----------------G-------NEHIRVSA--FGHREYISEACRRLK 438 (441)
Q Consensus 400 ~~gi~v~pg~~f~~~----------------~-------~~~iRls~--~~~~~~~~~~l~~l~ 438 (441)
++||.+... +.+. . .+.||+++ ..++++++.+++.|+
T Consensus 291 ~~gI~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 291 EAGIETRVH--YPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred HCCCCeeee--cCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 559966532 1110 0 26799997 458999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-18 Score=164.93 Aligned_cols=303 Identities=17% Similarity=0.148 Sum_probs=186.2
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEEe
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAVQ 164 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv~ 164 (441)
.+...+++.+.+.. +...+ .....+|++++|+++ +. +++++|+|+++|+.+ +..+ +++||+|+++
T Consensus 13 ~~~e~~~~~~~l~~-----~~~~~--g~~~~~le~~la~~~----g~--~~~v~~~sgt~al~lal~al~~~~Gd~Viv~ 79 (379)
T PRK11658 13 GDEELAAVKEVLRS-----GWITT--GPKNQALEQAFCQLT----GN--QHAIAVSSATAGMHITLMALGIGPGDEVITP 79 (379)
T ss_pred CHHHHHHHHHHHHc-----CCccC--CHhHHHHHHHHHHHh----CC--CeEEEECCHHHHHHHHHHHcCCCCCCEEEEC
Confidence 35557777777752 22223 346799999999997 54 468889999999998 5666 7899999999
Q ss_pred CCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEcCCCCccccCCCHHHHHHH
Q 013521 165 DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFCSPNNPTGHAATWQQLKKL 239 (441)
Q Consensus 165 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i 239 (441)
.|+|+++...+...| .+++.++++.+ ++..|.+ + .+++++|+ |.||+|...+ +++|
T Consensus 80 ~~~~~~~~~~~~~~G------------~~~v~vd~~~~-~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d---~~~i 140 (379)
T PRK11658 80 SLTWVSTLNMIVLLG------------ATPVMVDVDRD-TLMVTPEAIEAAITPRTKAII---PVHYAGAPAD---LDAI 140 (379)
T ss_pred CCcHHHHHHHHHHcC------------CEEEEEecCCC-cCCcCHHHHHHhcccCCeEEE---EeCCCCCcCC---HHHH
Confidence 999999988888888 58999998764 3333422 2 36788876 5667999887 7889
Q ss_pred HHHHHHcCcEEEEccccccc-ccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHH
Q 013521 240 VEFAKANGSIIVYDSAYAAY-ITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNR 318 (441)
Q Consensus 240 ~~~a~~~~~~ii~De~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~ 318 (441)
.++|++||++||+|++++.. .+.+. .+... + +.+.||++.-.+++.+.|+++++++.+ .+++..
T Consensus 141 ~~~a~~~gi~vi~D~a~a~g~~~~~~--~~g~~----g--~~~~Sf~~~K~l~~g~GG~v~~~~~~~-------~~~~~~ 205 (379)
T PRK11658 141 RAIGERYGIPVIEDAAHAVGTYYKGR--HIGAR----G--TAIFSFHAIKNITCAEGGLVVTDDDEL-------ADRLRS 205 (379)
T ss_pred HHHHHHcCCeEEEECCCccCCeECCe--ecCCC----C--CEEEeCCCCCcCcccCceEEEECCHHH-------HHHHHH
Confidence 99999999999999999842 22221 12111 1 135566543334566789988764433 233333
Q ss_pred HHhhhcC--------------------C--CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCe-eeCC
Q 013521 319 IVCTCFN--------------------G--ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLK-VNGG 375 (441)
Q Consensus 319 ~~~~~~~--------------------~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~ 375 (441)
.+..... + .......|++.... .+.+++..++-++..+.+.+.|+++++. +..+
T Consensus 206 ~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~q---l~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~ 282 (379)
T PRK11658 206 LKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQ---LAKLEALNARRREIAARYLQALADLPFQPLSLP 282 (379)
T ss_pred HHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCC
Confidence 2211100 0 00111122333322 3445667777777778888888876432 2222
Q ss_pred CC----ceE-EEEEcC----CCChHHHHHHHHHhcCeEEeCCC----C---cCC---C---------CCCeEEEEee--c
Q 013521 376 KN----APY-VWVQFP----GSSSWDVFAEILEKTHILTIPGS----G---FGP---G---------GNEHIRVSAF--G 425 (441)
Q Consensus 376 ~~----~~~-~~~~~~----~~~~~~~~~~ll~~~gi~v~pg~----~---f~~---~---------~~~~iRls~~--~ 425 (441)
.. .++ ..+.++ +.+..++.+.|. ++||.+.+.. . |.. . ....|.|-+. .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~-~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l 361 (379)
T PRK11658 283 AWPHQHAWHLFIIRVDEERCGISRDALMEALK-ERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDM 361 (379)
T ss_pred CCCCceeEEEEEEEECCccccCCHHHHHHHHH-HCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCC
Confidence 11 222 223443 234556666655 5598765321 1 100 0 0233544443 3
Q ss_pred CHHHHHHHHHHHHhh
Q 013521 426 HREYISEACRRLKNF 440 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~ 440 (441)
++++++..++.|+++
T Consensus 362 ~~~~~~~i~~~i~~~ 376 (379)
T PRK11658 362 TDADVDRVITALQQI 376 (379)
T ss_pred CHHHHHHHHHHHHHH
Confidence 789999999999875
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-17 Score=164.23 Aligned_cols=338 Identities=13% Similarity=0.094 Sum_probs=198.0
Q ss_pred CCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcH
Q 013521 70 PDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~ 145 (441)
.++.++|+..|-. .+ ..+|.+.+++.+.+.+... ....+.+. +....+|+.+.+..+-. .+.++++++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~--~~~~~~~~----~~~~~la~~l~~~~p~~~~~~v~f~~SGs 111 (425)
T PRK07495 38 EGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTH--TCHQVVPY----ENYVRLAERLNALVPGDFAKKTIFVTTGA 111 (425)
T ss_pred CCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccC--cccCccCC----HHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence 3567888876632 22 3678899999998875421 11111122 23334454443322322 26899999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHh-cc----ccccccccCccceeEEeecCCCC-CccCC-----CC-
Q 013521 146 SDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIV-GQ----AGKFLKETGKYRNIVYMNCRPEN-NFFPD-----LS- 210 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~----~~~~~~~~~~~~~v~~v~~~~~~-~~~~~-----~~- 210 (441)
+|... + .........|+....+|++........ +. +..+.+.. ..+..+|..... +...+ ++
T Consensus 112 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~l~~ 188 (425)
T PRK07495 112 EAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMM---PDVYHVPFPVELHGVSVEQSLAALDK 188 (425)
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCC---CCeEEecCCcccccccHHHHHHHHHH
Confidence 99886 4 222334567998999999875433222 21 00111100 133444443210 11000 01
Q ss_pred ------CCCCccEEEEcCC--CCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEE
Q 013521 211 ------TTSRTDIIFFCSP--NNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEI 281 (441)
Q Consensus 211 ------~~~~~~~v~i~~p--~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i 281 (441)
...++.+|++ .| +| +| ..+|.+.+++|.++|++||+++|+||++..|...+........ +.+..+
T Consensus 189 ~~~~~~~~~~iaavi~-EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~----gv~pDi 262 (425)
T PRK07495 189 LFKADVDPQRVAAIII-EPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHH----EVAADL 262 (425)
T ss_pred HHHhccCCCceEEEEE-CCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeeccc----CCCCCE
Confidence 1135666665 55 56 78 5589999999999999999999999999977554432112111 233457
Q ss_pred ecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
.+|||.++ +|+++|++++++++. +.+........++.+++.+.++.+.++--.. ..+.++.++..+++
T Consensus 263 ~tlsK~l~-~G~pigav~~~~~i~--------~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~---~~l~~~~~~~g~~l 330 (425)
T PRK07495 263 TTMAKGLA-GGFPLAAVTGRAEIM--------DAPGPGGLGGTYGGNPLGIAAAHAVLDVIEE---EDLCERANQLGNRL 330 (425)
T ss_pred Eeehhhhc-CCccceEEEEcHHHH--------hccCCCCcCCCCCCCHHHHHHHHHHHHHHHh---chHHHHHHHHHHHH
Confidence 89999998 999999999998874 2222212234445788888866666641100 12333444444444
Q ss_pred HHHHHhC----C-C-eeeCCCCceEEEEEcCCCC--------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eec
Q 013521 362 VDAFQSL----G-L-KVNGGKNAPYVWVQFPGSS--------SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFG 425 (441)
Q Consensus 362 ~~~L~~~----g-~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~ 425 (441)
.+.|+++ + + .+.. .|.++|+++.... ...+...++ ++|+.+.+... ..+.|||. +..
T Consensus 331 ~~~L~~l~~~~~~i~~vrG--~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g~----~~~~~r~~Ppl~i 403 (425)
T PRK07495 331 KQRLASLRETVPEIADIRG--PGFMNAVEFNDADSGLPSAEFANRVRLKAL-EKGLILLTCGV----HGNVIRFLAPITI 403 (425)
T ss_pred HHHHHHHHhhCCCeeeeec--CceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEeecCC----CCCEEEEeCCCcc
Confidence 4444332 2 1 2222 4889999985211 123444444 56999876321 24679998 566
Q ss_pred CHHHHHHHHHHHHhhC
Q 013521 426 HREYISEACRRLKNFL 441 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~l 441 (441)
+++++++++++|.+++
T Consensus 404 t~~~id~~~~~l~~~l 419 (425)
T PRK07495 404 QDDVFAEALDILEASI 419 (425)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999998764
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-18 Score=179.81 Aligned_cols=343 Identities=13% Similarity=0.101 Sum_probs=212.5
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC----CcCcHHHHHHHHHHHhhhCCCCCC--cEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA----EQGNMALRTAIADKFYKDMGIEGD--EIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~--~I~~t~G~~~ 146 (441)
+++.|+.+....+++..+.+++.+........++ ..|.. ..-..+.|+.+|+++ +++++ .|++|+|+|+
T Consensus 34 ~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~-s~~~~s~~~~~~~e~aR~~ia~~l----ga~~~~~~VvFtsnaT~ 108 (805)
T PLN02724 34 GVVYLDHAGATLYSESQLEAALADFSSNVYGNPH-SQSDSSMRSSDTIESARQQVLEYF----NAPPSDYACVFTSGATA 108 (805)
T ss_pred CCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCC-cCcchhhhHHHHHHHHHHHHHHHh----CCCccceEEEEeCChHH
Confidence 3688888876554556666666666554321122 12211 223567788888886 77665 5899999999
Q ss_pred HHHHH-HHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC--------CCCccC---CCCC--
Q 013521 147 DISRL-QML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP--------ENNFFP---DLST-- 211 (441)
Q Consensus 147 al~~l-~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~--------~~~~~~---~~~~-- 211 (441)
+++++ ..+ +++||+|++..-.|++...+...+..+| +++..++++. .+.... +++.
T Consensus 109 alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G---------~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~ 179 (805)
T PLN02724 109 ALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKG---------AAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRN 179 (805)
T ss_pred HHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcC---------CeEEeccchhccccccccccccccchhhhhhhh
Confidence 99985 444 6899999998888888776554443333 3777777652 111111 1111
Q ss_pred ----------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc-----CcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 212 ----------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKAN-----GSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 212 ----------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~-----~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
.++++++.+++-+|-||.++|.+.++++.+.++.+ ++++++|.+++--. .+..+..+ +
T Consensus 180 ~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~---~piDv~~~----~ 252 (805)
T PLN02724 180 TSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGT---SPPDLSRY----P 252 (805)
T ss_pred hhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCC---CCCChhhc----C
Confidence 13567888888899999999966554444433322 36899999887311 13334333 3
Q ss_pred eeEEEecCCcccCCccceeEEEEeeccccccCCchhH------------------H-HHHHHHhhhcCCCcHHHHHHHHH
Q 013521 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVI------------------K-DFNRIVCTCFNGASNIVQAGGLA 337 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~a~~~ 337 (441)
..+++.|++|++| ....+|+++++++.+..-.+... . .-.++...+.+..+.++..+++.
T Consensus 253 ~Dfl~~S~HK~~G-gP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~ 331 (805)
T PLN02724 253 ADFVVVSFYKIFG-YPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFK 331 (805)
T ss_pred CCEEEEecceecc-CCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHH
Confidence 3599999999997 23348999888765321000000 0 00111121222222233333444
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-------CCeeeCCC--------CceEEEEEcCCCC----hHHHHHHHH
Q 013521 338 CLSPDGFQALRTVIDYYKENAKIIVDAFQSL-------GLKVNGGK--------NAPYVWVQFPGSS----SWDVFAEIL 398 (441)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~--------~~~~~~~~~~~~~----~~~~~~~ll 398 (441)
.+.+.+ +++..++.++..+++.+.|.++ ++.++++. .+..+.+.+.+.+ ....+.+++
T Consensus 332 ~l~~ig---~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~ 408 (805)
T PLN02724 332 LLNRLT---ISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLA 408 (805)
T ss_pred HHHHhC---hHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHH
Confidence 443323 4677788888888999998876 36666532 3456767765433 234467777
Q ss_pred HhcCeEEeCCCCcCCC---------------------------------CCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 399 EKTHILTIPGSGFGPG---------------------------------GNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 399 ~~~gi~v~pg~~f~~~---------------------------------~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.++||.++.|..+.+. ..+.||+|+ +++.+|++.+++.|++.
T Consensus 409 ~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~ 485 (805)
T PLN02724 409 SLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISS 485 (805)
T ss_pred HhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHH
Confidence 8889999999877521 137899997 56899999999999874
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-18 Score=159.87 Aligned_cols=205 Identities=20% Similarity=0.244 Sum_probs=159.4
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCC-C-CCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKG-Y-KGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~-~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
.+.+.+.|+.+.. .|.++.|+++|.+.+..+...+. . ..|....+..+.|+.+|+++ +.++.+|++|+|+|++
T Consensus 40 ~~~~~vyld~~at-~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklI----nAd~~dIiFts~ATEs 114 (428)
T KOG1549|consen 40 HGTRPVYLDNQAT-GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLI----NADPSDIVFTSGATES 114 (428)
T ss_pred CCCccEEEecCcC-CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHh----CCCCCcEEEeCCchHH
Confidence 3456788887764 35789999999998876642222 2 23334456788999999996 8999999999999999
Q ss_pred HHH-HHHh-cCCCC----EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCcc
Q 013521 148 ISR-LQML-LGSNV----TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTD 216 (441)
Q Consensus 148 l~~-l~~l-~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~ 216 (441)
+++ +..+ ..++| .|++..-.|+.....++.+..+| .+++++|+..++. .++++ .++|+
T Consensus 115 ~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g---------~~Vt~lpv~~~~~--~d~~~~~~~i~~~T~ 183 (428)
T KOG1549|consen 115 NNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEG---------LEVTYLPVEDSGL--VDISKLREAIRSKTR 183 (428)
T ss_pred HHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcC---------eEEEEeccCcccc--ccHHHHHHhcCCCce
Confidence 998 5554 34566 89999999999988888887655 4899999984332 33222 47999
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
++.|.+.+|-+|+++| +++|+.+|+++++.+++|.+++- +..+..+..+. ..++..|.+|++|.|| +|
T Consensus 184 lv~I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQav---G~i~vDV~eln----~D~~s~s~HK~ygp~~--iG 251 (428)
T KOG1549|consen 184 LVSIMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQAV---GKIPVDVQELN----ADFLSISAHKIYGPPG--IG 251 (428)
T ss_pred EEEEEecccCcccccc---HHHHHHHhCcCCcEEEeehhhhc---CCccccHHHcC----chheeeecccccCCCc--ce
Confidence 9999999999999999 89999999999999999999882 22245555552 3488999999999888 99
Q ss_pred EEEeec
Q 013521 297 WTVVPE 302 (441)
Q Consensus 297 ~l~~~~ 302 (441)
++++++
T Consensus 252 aLYvr~ 257 (428)
T KOG1549|consen 252 ALYVRR 257 (428)
T ss_pred EEEEcc
Confidence 999886
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-18 Score=164.33 Aligned_cols=214 Identities=17% Similarity=0.155 Sum_probs=138.7
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHh-ccccccccccCccce
Q 013521 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKFLKETGKYRN 193 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~ 193 (441)
-...|++.+|++. +. ...+++++| +.++.+++.+++|||+|+++.|.|++....+... ...| ++
T Consensus 51 ~~~~Le~~la~l~----g~-~~al~~~SG-~~Al~~~l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~g---------i~ 115 (380)
T PRK06176 51 TRFALEELIADLE----GG-VKGFAFASG-LAGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNG---------LS 115 (380)
T ss_pred hHHHHHHHHHHHh----CC-CCEEEECCH-HHHHHHHHHHcCCCCEEEEcCCChhHHHHHHHHHHHhcC---------eE
Confidence 4688899999885 43 345666666 5588776678899999999999998765444321 1111 46
Q ss_pred eEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC
Q 013521 194 IVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG 273 (441)
Q Consensus 194 v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~ 273 (441)
++.++..+.+.+... ..+++++|++++|+||||.+++ +++|+++|++||+++|+|++|+...... | + ..
T Consensus 116 v~~vd~~d~e~l~~a--i~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~~-p--~-~~-- 184 (380)
T PRK06176 116 CTIIDTSDLSQIKKA--IKPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQN-P--L-LL-- 184 (380)
T ss_pred EEEcCCCCHHHHHHh--cCcCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccCC-c--c-cc--
Confidence 666654321111111 1367999999999999999998 8899999999999999999998533221 2 2 11
Q ss_pred CcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHH
Q 013521 274 AREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVID 352 (441)
Q Consensus 274 ~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 352 (441)
+..+++.|++|.++.+| .-.|++++.++.+ .+++...+.......++.....+. .+.+.+..+.+
T Consensus 185 --gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~-------~~~~~~~~~~~G~~~~~~~~~l~~-----~gl~tl~~R~~ 250 (380)
T PRK06176 185 --GADIVVHSGTKYLGGHSDVVAGLVTTNNEAL-------AQEIAFFQNAIGGVLGPQDSWLLQ-----RGIKTLGLRME 250 (380)
T ss_pred --CCCEEEecCceeccCCccceeeEEEecHHHH-------HHHHHHHHHHhcCCCCHHHHHHHH-----hccCcHHHHHH
Confidence 23489999999997554 3467777754433 344444444333333433322111 23333455666
Q ss_pred HHHHHHHHHHHHHHhC
Q 013521 353 YYKENAKIIVDAFQSL 368 (441)
Q Consensus 353 ~~~~~~~~l~~~L~~~ 368 (441)
+.+++...+.+.|+++
T Consensus 251 ~~~~~a~~la~~L~~~ 266 (380)
T PRK06176 251 AHQKNALCVAEFLEKH 266 (380)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6677888888888876
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-17 Score=162.81 Aligned_cols=341 Identities=14% Similarity=0.096 Sum_probs=198.6
Q ss_pred CCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|-. .+ ..+|.+.+++.+.+.+..... ...| ......+|.+.++++ .+-..+.+++++++++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~-~~~~-~~~~~~~la~~L~~~----~~~~~~~v~f~~SGse 114 (433)
T PRK08117 41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGP-SGVI-YYESILKLAEELAEI----TPGGLDCFFFSNSGAE 114 (433)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcc-cccc-CCHHHHHHHHHHHHh----CCCCCCEEEEeCcHHH
Confidence 3567888877732 22 367899999999987643111 1112 222334455555554 2323468999888888
Q ss_pred HHHH-HH--HhcCCCCEEEEeCCCchhhHhHHHHh-cccc----ccccccCccceeEEeecCCCCC-------------c
Q 013521 147 DISR-LQ--MLLGSNVTVAVQDPSFPAYIDTSVIV-GQAG----KFLKETGKYRNIVYMNCRPENN-------------F 205 (441)
Q Consensus 147 al~~-l~--~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~----~~~~~~~~~~~v~~v~~~~~~~-------------~ 205 (441)
|... +. ........|+...-+|++........ +... .+.+.. ..+..+|...... .
T Consensus 115 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (433)
T PRK08117 115 AIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLL---GSVYQAPYPYCDRCPKGEDPEVCFLEC 191 (433)
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCC---CCcEEeCCCccccccccCchhHHHHHH
Confidence 8875 42 22333467888888998864433222 2110 000000 1233333321100 0
Q ss_pred cCCCC-------CCCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 206 FPDLS-------TTSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 206 ~~~~~-------~~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
..+++ ...++.+| |..| +...|.+ .+.+.+++|.++|++||+++|+||+|..|...+.......+.-.+|
T Consensus 192 ~~~l~~~~~~~~~~~~~aav-i~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pD 270 (433)
T PRK08117 192 LRDLESLFKHQVTPEEVAAV-IIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPD 270 (433)
T ss_pred HHHHHHHHHhccCCCcEEEE-EECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCC
Confidence 00011 11345454 4566 5556766 5799999999999999999999999998655443221122221233
Q ss_pred eeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013521 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE 356 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 356 (441)
+.||||.+| +|+++|+++++++++ +.+.......+.+.+++++.++.+.++.... +...++.++
T Consensus 271 ----i~t~sK~lg-~G~pigav~~~~~i~--------~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~---~~l~~~~~~ 334 (433)
T PRK08117 271 ----IMTIAKGIA-SGLPLSAVVASKELM--------EQWPLGSHGTTFGGNPVACAAALATLEVIKE---EKLLDNANE 334 (433)
T ss_pred ----Eeehhhhcc-CCCcceeEEEcHHHH--------hhccCCCCCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHH
Confidence 469999998 999999999988773 3332222233345688888888888862111 233444555
Q ss_pred HHHHHHHHHHhC----CCeeeCCCCceEEEEEcCCC------C-hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--e
Q 013521 357 NAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGS------S-SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--A 423 (441)
Q Consensus 357 ~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~------~-~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~ 423 (441)
+.+++.+.|+++ ++.......|.++++.+... . ...+...++ ++||.+.+.. . ..+++|++ +
T Consensus 335 ~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~g---~-~~~~lRl~p~~ 409 (433)
T PRK08117 335 MGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCL-EKGLLFYLCG---N-AGNVLRMIPPL 409 (433)
T ss_pred HHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHH-HCCCEEeecC---C-CCCEEEEeCCc
Confidence 555555555543 32222223466777777311 1 123444444 5699987632 1 24689999 4
Q ss_pred ecCHHHHHHHHHHHHhhC
Q 013521 424 FGHREYISEACRRLKNFL 441 (441)
Q Consensus 424 ~~~~~~~~~~l~~l~~~l 441 (441)
..+++++++++++|.+++
T Consensus 410 ~~t~~~i~~~~~~l~~~l 427 (433)
T PRK08117 410 TVTKEEIDEGLDILDEAL 427 (433)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 669999999999998763
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-18 Score=163.17 Aligned_cols=314 Identities=14% Similarity=0.163 Sum_probs=194.0
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCCC-------cCcHHHHHHHHHHHhhhCCC-CCCcEEEcCC-cHHHHHH-HH
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGAE-------QGNMALRTAIADKFYKDMGI-EGDEIFISDG-AQSDISR-LQ 152 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~-------~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G-~~~al~~-l~ 152 (441)
+.+.|+.+.+++.+.+..+. ..+...|... .-..+.|+.+++++ +. ++++|++|+| +|++++. +.
T Consensus 7 p~~~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~----~~~~~~~vvf~~gs~T~a~~~~~~ 81 (355)
T cd00611 7 PAALPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELL----NIPDNYKVLFLQGGATGQFAAVPL 81 (355)
T ss_pred CCCCCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEEcCCchHHHHHHHH
Confidence 45678999999999886544 2333333322 23456677777775 66 5678999988 9999998 67
Q ss_pred HhcC---CCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCc-c-CC---CCCCCCccEEEEcCCC
Q 013521 153 MLLG---SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF-F-PD---LSTTSRTDIIFFCSPN 224 (441)
Q Consensus 153 ~l~~---~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~-~-~~---~~~~~~~~~v~i~~p~ 224 (441)
.++. +||.|++ .|-.......++..| .+++.++.+.++++ . ++ .+..+++++|.+++..
T Consensus 82 ~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~ 148 (355)
T cd00611 82 NLLGDKGTADYVVT-GAWSAKAAKEAKRYG------------GVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNE 148 (355)
T ss_pred hcCCCCCeEEEEEC-CHHHHHHHHHHHhcC------------CCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCc
Confidence 7776 4455543 222222233445556 47777777543222 1 22 1224789999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
|.||..++ ++++.||+++++|.+.+-.. .|..+..+ + +.+.|..|.+|.+| +|++++++++
T Consensus 149 t~tG~~~~--------~i~~~~g~~~~VDa~qs~g~---~~idv~~~----~--~~~ss~~K~lGP~G--~g~l~~~~~~ 209 (355)
T cd00611 149 TIHGVEFD--------EVPDTGGVPLVADMSSNILS---RPIDVSKF----G--VIYAGAQKNLGPAG--VTVVIVRKDL 209 (355)
T ss_pred ccccEEcc--------eecccCCCeEEEEccccccC---CCCCHHHh----C--EEEeecccccCCCc--eEEEEECHHH
Confidence 99999754 23445999999999987322 13333332 2 45677899998666 8999998887
Q ss_pred cccCCc---hhHHHHHHHHhhh-cCCCcHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eeC-
Q 013521 305 RYSNGY---PVIKDFNRIVCTC-FNGASNIVQAGGLACLS---PDGFQALRTVIDYYKENAKIIVDAFQSL-GLK-VNG- 374 (441)
Q Consensus 305 ~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~- 374 (441)
+....+ ...+......... .++++.....+..++++ +.+ .++.+.++.++..+++++.|+++ |+. ...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~g--g~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~ 287 (355)
T cd00611 210 LGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQG--GVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVD 287 (355)
T ss_pred HhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHhCccccccCCC
Confidence 633111 1111000011111 23444444444444443 330 25888899999999999999998 863 211
Q ss_pred C--CCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 375 G--KNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 375 ~--~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
+ ..+..+.+.+++. ...++...+ .+.|+...+|.. ..+.||+|+ +++.+|++++++.|+++
T Consensus 288 ~~~rs~~vvsf~~~~~~l~~~~~~~~-~r~G~~~~~~~~----~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 288 KRARSRMNVPFRLGKEELEKEFLKEA-EAAGMIGLKGHR----SVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred HHHcCceEEEEEcCChhhhHHHHHHH-HHCCCcccCCCc----ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 1 1224477777653 123333444 446998666653 236899997 44999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-17 Score=158.62 Aligned_cols=317 Identities=13% Similarity=0.155 Sum_probs=200.6
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcH---HHHHHHHHHHhhhCCCC-CCcEEEcCC-cHHHHHH-HHHhcCCCC
Q 013521 86 IPDIITSAMAEHAFALSTVKGYKGYGAEQGNM---ALRTAIADKFYKDMGIE-GDEIFISDG-AQSDISR-LQMLLGSNV 159 (441)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~---~lr~~ia~~l~~~~~~~-~~~I~~t~G-~~~al~~-l~~l~~~gd 159 (441)
.|..+++++.+.+..+.+ .+...|....-.. ++-+.+.+.+.+-++.+ ..+|++++| +|.+++. +..++.+||
T Consensus 3 ~p~~v~~~~~~~~~~~~~-~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~ 81 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNG-TGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGK 81 (349)
T ss_pred CCHHHHHHHHHHHhCccC-CCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCC
Confidence 578899999999886552 3333332222223 44444444444445763 457888877 9999998 788888999
Q ss_pred EEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCc--cCC---CCCCCCccEEEEcCCCCccccCCC
Q 013521 160 TVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF--FPD---LSTTSRTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 160 ~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~--~~~---~~~~~~~~~v~i~~p~NPtG~~~~ 232 (441)
++++..-+..+. .++++..| . ++.+..++..++ ..+ ++..+++++|.+++..|.||+..+
T Consensus 82 ~~l~i~~G~fg~r~~~~a~~~g------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~th~ETstGv~~~ 148 (349)
T TIGR01364 82 VADYIVTGAWSKKAAKEAKKYG------------V-VNVVASGKEGNYTKIPDPSTWEISEDAAYVHYCANETIHGVEFR 148 (349)
T ss_pred eEEEEECCHHHHHHHHHHHHhC------------C-cEEEeccccCCCCCCCCHHhcCCCCCCCEEEEcCCCCcccEecc
Confidence 999888877764 45555555 3 444443322111 112 233468899999999999999876
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchh
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPV 312 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~ 312 (441)
++++.+++++++|.+.+-. ..|..+..+ + +++.|..|.+|.|| +|+++++++.+....+..
T Consensus 149 --------~l~~~~~~l~iVDavss~g---~~~id~~~~----d--~~~~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~ 209 (349)
T TIGR01364 149 --------ELPDVKNAPLVADMSSNIL---SRPIDVSKF----G--LIYAGAQKNIGPAG--LTVVIVRKDLLGRASRIT 209 (349)
T ss_pred --------eecccCCCeEEEEcccccc---CccCCHHHc----c--EEEEecccccCCCc--eEEEEECHHHHhhcccCC
Confidence 5556789999999998732 113333222 3 89999999998666 899999988863311110
Q ss_pred --HHHHHHHH--hhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhC-CCeeeCC----CCceEEE
Q 013521 313 --IKDFNRIV--CTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSL-GLKVNGG----KNAPYVW 382 (441)
Q Consensus 313 --~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~ 382 (441)
...+.... .....+++.....+..++++.-... .++++.++.++..+++++.|+++ |+..... .....+.
T Consensus 210 ~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~s 289 (349)
T TIGR01364 210 PSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVV 289 (349)
T ss_pred CCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEE
Confidence 00111111 1222344555544444444411112 25888999999999999999998 6644321 1224466
Q ss_pred EEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 383 VQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 383 ~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
+.+++. ...++... +.++|+++.+|.. ..+.||+|+ +++.+|++.+++.|+++
T Consensus 290 f~~~~~~~~~~~~~~-~~~~Gi~~~~~~~----~~g~vRvS~~~~nt~edid~l~~al~~~ 345 (349)
T TIGR01364 290 FTLGNEELEKRFLKE-AEERGLVSLKGHR----SVGGMRASIYNAMPLEGVQALVDFMKEF 345 (349)
T ss_pred EecCChhHhHHHHHH-HHHCCCcccCCcc----ccCeeEEECcCCCCHHHHHHHHHHHHHH
Confidence 777643 22344344 4456998877754 235899996 45899999999999875
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=152.01 Aligned_cols=361 Identities=17% Similarity=0.151 Sum_probs=231.7
Q ss_pred hCCC-CCccccccccccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCC
Q 013521 28 SSRW-PVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVK 105 (441)
Q Consensus 28 ~~g~-~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~ 105 (441)
..+| ...|.|||-+.+.-...-.+ .+ ..+...+++++|+-+++ .+..+|++.++-++++.+++...
T Consensus 34 ~~~legi~gagtwk~erVi~s~q~p--~i----------~v~G~~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGl 101 (417)
T KOG1359|consen 34 GDELEGIKGAGTWKRERVITSRQGP--TI----------QVKGSDKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGL 101 (417)
T ss_pred cCccceecccccceeeeEEeecccc--eE----------EEeccccceeeecccccccccCChHHHHHHHHHHHHhCCCc
Confidence 4556 88999999765321111101 11 12233467999998885 56788999999999999887322
Q ss_pred CCCCC--CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccc
Q 013521 106 GYKGY--GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGK 183 (441)
Q Consensus 106 ~~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 183 (441)
....+ +...-...|...||++ +-..|.|+..++......++-.++.|.|.|+..+..+.++....+++.+.+.
T Consensus 102 ssvrfIcGtq~iHk~LE~kiAqf-----h~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLckry~h 176 (417)
T KOG1359|consen 102 SSVRFICGTQDIHKLLESKIAQF-----HGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLCKRYRH 176 (417)
T ss_pred cceeEEecchHHHHHHHHHHHHH-----hCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHHhhhcc
Confidence 21111 0112335566777776 4456777777777766666777889999999999999999888887764221
Q ss_pred cccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC
Q 013521 184 FLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP 263 (441)
Q Consensus 184 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~ 263 (441)
+....+ ...... ....+.++|+....-...|.+.| +++|.+++++||.++++||+|..+.++.
T Consensus 177 ----------~dv~~l---~~~l~~-a~k~r~klv~TDg~FSMDGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~ 239 (417)
T KOG1359|consen 177 ----------VDVFDL---EHCLIS-ACKMRLKLVVTDGVFSMDGDIAP---LEEISQLAKKYGALLFIDECHATGFFGE 239 (417)
T ss_pred ----------chhHHH---HHHHHH-hhhheEEEEEecceeccCCCccc---HHHHHHHHHhcCcEEEEeecccceeecC
Confidence 111100 000000 11246677666677888999999 8899999999999999999999877765
Q ss_pred CCCcccccCC-CcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHh--hhcCC-CcH---HHHHHHH
Q 013521 264 SPRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVC--TCFNG-ASN---IVQAGGL 336 (441)
Q Consensus 264 ~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~---~~~~a~~ 336 (441)
......+..+ ..+.+|+.++++|.+| |---||..+|.+++ . +.+.+. ..+.+ .++ .+..++.
T Consensus 240 tGrGt~E~~~vm~~vdiinsTLgKAlG--ga~GGyttgp~~li--------~-llrqr~RpylFSnslppavV~~a~ka~ 308 (417)
T KOG1359|consen 240 TGRGTAEEFGVMGDVDIINSTLGKALG--GASGGYTTGPKPLI--------S-LLRQRSRPYLFSNSLPPAVVGMAAKAY 308 (417)
T ss_pred CCCChHHHhCCCCcceehhhhhhhhhc--CCCCCCccCChhHH--------H-HHHhcCCceeecCCCChhhhhhhHHHH
Confidence 5444444322 3466799999999997 33349999999984 2 322222 22211 221 1112222
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCc-CCC
Q 013521 337 ACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGF-GPG 414 (441)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f-~~~ 414 (441)
+++.. -.......+.+.+.+++.++..|+.+... +-+...+-+.+ ........++|+. ||.|..-+.- -|.
T Consensus 309 dllm~-----s~~~i~~~~a~~qrfr~~me~aGftIsg~-~hPI~pv~lGda~lA~~~ad~lLk~-Gi~Vigfs~PvVP~ 381 (417)
T KOG1359|consen 309 DLLMV-----SSKEIQSRQANTQRFREFMEAAGFTISGA-SHPICPVMLGDARLASKMADELLKR-GIYVIGFSYPVVPK 381 (417)
T ss_pred HHHHh-----hHHHHHHHHHHHHHHHHHHHhcCceecCC-CCCccceecccHHHHHHHHHHHHhc-CceEEeecCCcCCC
Confidence 23321 14455666778888888888889888653 34455555542 2344667888876 9999864432 244
Q ss_pred CCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 415 GNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 415 ~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
+...||+.+ .+++++++++++++.++
T Consensus 382 gkariRVqiSAaHt~edid~~i~Af~~v 409 (417)
T KOG1359|consen 382 GKARIRVQISAAHTEEDIDRLIEAFSEV 409 (417)
T ss_pred CceEEEEEEehhcCHHHHHHHHHHHHHH
Confidence 566788776 45899999999998764
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-18 Score=165.31 Aligned_cols=221 Identities=18% Similarity=0.192 Sum_probs=142.2
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHh-ccccccccccCc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKFLKETGK 190 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~ 190 (441)
.+-..+|+++||++. + .+..++++++++|+.+ +..++++||+|+++.+.|++....+... ...|
T Consensus 57 ~pt~~~Le~~lA~l~----g--~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~g-------- 122 (425)
T PRK06084 57 NPTNDVLEQRVAALE----G--GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIG-------- 122 (425)
T ss_pred CchHHHHHHHHHHHh----C--CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccce--------
Confidence 345678899999885 4 2455667777799987 6778899999999999998765544432 1111
Q ss_pred cceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc
Q 013521 191 YRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI 268 (441)
Q Consensus 191 ~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~ 268 (441)
+++.+++..+. .++++ .+++++|++++|+||||.+++ +++|+++|+++|++||+|++|+.... ..++
T Consensus 123 -i~v~~~d~~d~----e~le~ai~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~---~~p~ 191 (425)
T PRK06084 123 -IETRFAAHDDI----AALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL---CRPF 191 (425)
T ss_pred -eEEEEECCCCH----HHHHHHhccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc---CChh
Confidence 35555543211 11221 357899999999999999999 78999999999999999999984221 1112
Q ss_pred cccCCCcceeEEEecCCcccCCccceeEEEEeeccccc-cCC---c----------------------hhH-HHHHHHHh
Q 013521 269 YEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY-SNG---Y----------------------PVI-KDFNRIVC 321 (441)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~-~~~---~----------------------~~~-~~~~~~~~ 321 (441)
.. +..+++.|+||.++.+|.++|.+++...... ... . ... ........
T Consensus 192 -~~----gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 266 (425)
T PRK06084 192 -EH----GADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLR 266 (425)
T ss_pred -hc----CCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHH
Confidence 11 2349999999999988999998777532110 000 0 000 00000111
Q ss_pred hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 322 TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 322 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
......+++... -.+ .+.+.+..+.++.+++...+.+.|+++
T Consensus 267 ~~g~~l~~~~a~---l~l--rgl~tl~~R~~~~~~na~~la~~L~~~ 308 (425)
T PRK06084 267 NMGAALSPFNAF---LIL--QGLETLALRMERHTENALKVARYLQQH 308 (425)
T ss_pred hcCCCCCHHHHH---HHH--cCcCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 222233444322 222 344556777888888999999999987
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=164.37 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=121.4
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGK 190 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~ 190 (441)
|..-..++++.+|+++ +.+ +-+++|+|+++++.+ +..++++||.|+++.|+|.++...+...|
T Consensus 57 ~~g~i~~~~~~~A~~~----ga~-~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g----------- 120 (294)
T cd00615 57 PTGPIKEAQELAARAF----GAK-HTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSG----------- 120 (294)
T ss_pred CChHHHHHHHHHHHHh----CCC-CEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCC-----------
Confidence 3444678889999886 543 455569999999887 68889999999999999999988888888
Q ss_pred cceeEEeecCCCCCc----cCCCC---C----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-
Q 013521 191 YRNIVYMNCRPENNF----FPDLS---T----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA- 258 (441)
Q Consensus 191 ~~~v~~v~~~~~~~~----~~~~~---~----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~- 258 (441)
.++++++.+.+..+ ..+.+ . .++++++++++| ||||.+++ +++|+++|+++|+++|+|++|+.
T Consensus 121 -~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~ 195 (294)
T cd00615 121 -AVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAH 195 (294)
T ss_pred -CEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhh
Confidence 47777776543321 12221 1 257899999999 78999998 88999999999999999999985
Q ss_pred cccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEE-Eeecc
Q 013521 259 YITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT-VVPEE 303 (441)
Q Consensus 259 ~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l-~~~~~ 303 (441)
+.+.+. +.+.. ..+.++++.|++|++ +|++.|++ ..+++
T Consensus 196 ~~~~~~~~~~~~----~~~~div~~S~hK~l--~g~~~~~~l~~~~~ 236 (294)
T cd00615 196 FRFHPILPSSAA----MAGADIVVQSTHKTL--PALTQGSMIHVKGD 236 (294)
T ss_pred hccCcccCcchh----hcCCcEEEEchhccc--chHhHHHHHHhCCC
Confidence 333321 22221 124569999999986 68876544 45444
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=160.22 Aligned_cols=214 Identities=14% Similarity=0.143 Sum_probs=139.8
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhccccccccccC
Q 013521 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLKETG 189 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~ 189 (441)
+..+.++++++.+... ...++.|++++ +++|+.. +..++++||+|+++.|.|+++...+ ...|
T Consensus 61 ~gnPt~~~Le~~la~l-e~~~~~v~~sS-G~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~G---------- 128 (395)
T PRK05967 61 RGTPTTDALCKAIDAL-EGSAGTILVPS-GLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLG---------- 128 (395)
T ss_pred CCChHHHHHHHHHHHH-hCCCCEEEECc-HHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcC----------
Confidence 3344455555554321 12345555555 6788887 6788999999999999999976544 4445
Q ss_pred ccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc
Q 013521 190 KYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY 269 (441)
Q Consensus 190 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~ 269 (441)
+++..++.+..+.+...+ .+++|+|++++|+||++ ...++++|+++|+++|+++|+|++|....+- .++
T Consensus 129 --i~v~~vd~~~~e~l~~al--~~~TklV~lesPsNP~l---~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~---~pl- 197 (395)
T PRK05967 129 --VEVEYYDPEIGAGIAKLM--RPNTKVVHTEAPGSNTF---EMQDIPAIAEAAHRHGAIVMMDNTWATPLYF---RPL- 197 (395)
T ss_pred --eEEEEeCCCCHHHHHHhc--CcCceEEEEECCCCCCC---cHHHHHHHHHHHHHhCCEEEEECCccCceec---Chh-
Confidence 477777543211111111 36799999999999976 4455999999999999999999999742211 111
Q ss_pred ccCCCcceeEEEecCCcccCC-ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 270 EIPGAREVAIEISSFSKFAGF-TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 270 ~~~~~~~~~i~i~S~SK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
.+ +..+++.|.+|.++- .+.-.|+++.+++. .+.+...........++.. +..++ .+.+.+.
T Consensus 198 ~~----GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~--------~~~l~~~~~~~G~~~~p~d---a~l~~--rgl~Tl~ 260 (395)
T PRK05967 198 DF----GVDISIHAATKYPSGHSDILLGTVSANEKC--------WPQLLEAHGTLGLCAGPDD---TYQIL--RGLRTMG 260 (395)
T ss_pred Hc----CCCEEEEecccccCCCCCeeEEEEEcCHHH--------HHHHHHHHHHcCCCCCHHH---HHHHH--cCcccHH
Confidence 11 334999999998752 34667877766543 3334333333334445544 22222 4555567
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 013521 349 TVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~ 368 (441)
-+.++..++...+.+.|+++
T Consensus 261 lR~~~~~~na~~lA~~L~~h 280 (395)
T PRK05967 261 IRLEHHRKSALEIARWLEGR 280 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 77788888899999999987
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=161.50 Aligned_cols=342 Identities=15% Similarity=0.128 Sum_probs=211.1
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCC--CC-CCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGY--KG-YGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~--~~-Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
..|+|=-+++ ..++.+.+++...+..... .++ .+ |+-.....++.....+...+.|+.+.-+|-.-+|++..+.
T Consensus 50 ~~l~LiasEN--~~s~~v~~a~~s~l~nkya-eg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~ 126 (493)
T PRK13580 50 SSLKLIASEN--YSSLAVQLAMGNLLTDKYA-EGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLV 126 (493)
T ss_pred cCceEecccc--cCCHHHHHHhcccccccCc-CCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHH
Confidence 4577766654 2567788888877654332 222 13 3323333444444444444578888889999999999888
Q ss_pred HHHHhcCC-------------------------------CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEee
Q 013521 150 RLQMLLGS-------------------------------NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMN 198 (441)
Q Consensus 150 ~l~~l~~~-------------------------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~ 198 (441)
.++++++| ||+|+..++...+........+..+ .+.+.+..+
T Consensus 127 v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~-------~~~~~~~y~ 199 (493)
T PRK13580 127 AFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISG-------KMFHQRSYG 199 (493)
T ss_pred HHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhh-------heeeeEecc
Confidence 88888876 7999998887766533211111111 113566666
Q ss_pred cCCCCCccCCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC
Q 013521 199 CRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG 273 (441)
Q Consensus 199 ~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~ 273 (441)
++.+.+ ..|++. .++++.|+++..+|- |...+ +++|.++|+++|+++++|++|.-........ ......
T Consensus 200 vd~~~g-~iD~d~l~~~~~~~~plvii~g~S~~-~~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~-~~~~~~ 273 (493)
T PRK13580 200 VDPDTG-LLDYDEIAALAREFKPLILVAGYSAY-PRRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVF-TGDEDP 273 (493)
T ss_pred cCcccC-ccCHHHHHHHHhhcCCEEEEeCcccc-CCCcC---HHHHHHHHHHcCCEEEEECchhhceeccccc-hhhcCC
Confidence 765432 233322 356677787877665 44667 8888888999999999999998644432110 000101
Q ss_pred CcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013521 274 AREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDY 353 (441)
Q Consensus 274 ~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 353 (441)
.++..|+++|++|++ .|.+.|++++++++ .+.+.........++.++...++..++.+-.....+.++++
T Consensus 274 ~~~~D~vtgT~hKaL--~GP~GG~I~~~~~l--------~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~ 343 (493)
T PRK13580 274 VPHADIVTTTTHKTL--RGPRGGLVLAKKEY--------ADAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQ 343 (493)
T ss_pred CCCCcEEEeCChhhc--cCCCeEEEEecHHH--------HHHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHH
Confidence 123458999999998 24446999998876 34443222222222222222222222321111112567889
Q ss_pred HHHHHHHHHHHHHhCCCeeeC-CCCceEEEEEcCCCC-hHHHHHHHHHhcCeEEeCCCCc-CCCC---CCeEEEEeec--
Q 013521 354 YKENAKIIVDAFQSLGLKVNG-GKNAPYVWVQFPGSS-SWDVFAEILEKTHILTIPGSGF-GPGG---NEHIRVSAFG-- 425 (441)
Q Consensus 354 ~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~v~pg~~f-~~~~---~~~iRls~~~-- 425 (441)
+.++.+.|.+.|.+.|+.+.. ...++.+++.+.+.. ....+...|++.||.+.+-... .+.+ ...|||+...
T Consensus 344 l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~t 423 (493)
T PRK13580 344 VVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALT 423 (493)
T ss_pred HHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhh
Confidence 999999999999999998753 245788999996432 2335665677779999864432 2333 6789999633
Q ss_pred ----CHHHHHHHHHHHHhh
Q 013521 426 ----HREYISEACRRLKNF 440 (441)
Q Consensus 426 ----~~~~~~~~l~~l~~~ 440 (441)
++++++++++.|.++
T Consensus 424 trg~teedi~~iad~l~~~ 442 (493)
T PRK13580 424 TLGMGSDEMDEVAELIVKV 442 (493)
T ss_pred hcCCCHHHHHHHHHHHHHH
Confidence 578999999998765
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-17 Score=158.78 Aligned_cols=343 Identities=12% Similarity=0.059 Sum_probs=191.9
Q ss_pred CCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhC--CCC-CCcEEE-cCC
Q 013521 71 DARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDM--GIE-GDEIFI-SDG 143 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~--~~~-~~~I~~-t~G 143 (441)
++.++|+..|-. .+ ..+|.+.+++.+.+.+... ... .....+.+..+|+.+.+.. +.. .+.+++ +++
T Consensus 34 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~---~~~---~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~s 107 (412)
T TIGR02407 34 GKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGI---IHS---LDMATEAKREFLETFNEIILKPRGLDYKVQFPGPT 107 (412)
T ss_pred CCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccc---eec---cccCcHHHHHHHHHHHHhccCccCCCceEEEeCCC
Confidence 456788766632 22 3679999999998875321 111 0112344455555554321 111 135656 478
Q ss_pred cHHHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHhccccccc-cccCccceeEEeecCCCCC---ccCC-CC----C
Q 013521 144 AQSDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFL-KETGKYRNIVYMNCRPENN---FFPD-LS----T 211 (441)
Q Consensus 144 ~~~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~-~~~~~~~~v~~v~~~~~~~---~~~~-~~----~ 211 (441)
+++|... + ........+|+....+|++....+.......... ........+..+|...... ...+ ++ .
T Consensus 108 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~ 187 (412)
T TIGR02407 108 GTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLED 187 (412)
T ss_pred chHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHh
Confidence 8888875 4 2223345689999999999765544332111000 0000001334444321000 0000 11 1
Q ss_pred C----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC
Q 013521 212 T----SRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285 (441)
Q Consensus 212 ~----~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 285 (441)
. +++.+|+ ..| +++.|. ..|.+.+++|.++|++||+++|+||++..|...+.........-.+| +.++|
T Consensus 188 ~~~~~~~~aavi-~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PD----i~~~~ 262 (412)
T TIGR02407 188 SSSGVDLPAAVI-LETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPD----IVCLS 262 (412)
T ss_pred ccCCCCceEEEE-eccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCC----EEEec
Confidence 0 2455655 456 888998 57999999999999999999999999986543332111111111345 33689
Q ss_pred cccCCc-cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhc----CCCcH-HHHHHHHHHHHHHHH
Q 013521 286 KFAGFT-GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL----SPDGF-QALRTVIDYYKENAK 359 (441)
Q Consensus 286 K~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l----~~~~~-~~~~~~~~~~~~~~~ 359 (441)
|.++ + |+++|++++++++ .. +.......+++.+++...++.+.+ .+... ++++++.+.++++.+
T Consensus 263 K~lg-~~G~pigav~~~~~~-~~--------~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~ 332 (412)
T TIGR02407 263 KSIS-GYGLPLALTLIKPEL-DV--------WKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLD 332 (412)
T ss_pred hhcc-CCccceeEEEEchhh-hc--------cCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 9998 7 9999999998764 11 111112223345666444444443 33222 334444444444444
Q ss_pred HHHHHHHhCCCeeeCCCCceEEEEEcCCCC-hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHH
Q 013521 360 IIVDAFQSLGLKVNGGKNAPYVWVQFPGSS-SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRR 436 (441)
Q Consensus 360 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~ 436 (441)
.+.+.+.. +.......|+++|++++... ...+...++ ++||.+.+... ..+.||++. ..+++++++++++
T Consensus 333 ~l~~~~~~--~~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~-~~Gv~v~~~~~----~~~~lr~~p~l~~t~~~i~~~~~~ 405 (412)
T TIGR02407 333 RIVAEYPE--LIKQVRGRGLMQGIECGDGDLAGKIAKAAF-ENGLIIETSGP----NDEVIKLLPPLTIDEETLQQGLDI 405 (412)
T ss_pred HHHhhCCC--ceEeeecceeEEEEEecChHHHHHHHHHHH-HCCCEEeccCC----CCCEEEEECCCCCCHHHHHHHHHH
Confidence 33333221 22223347899999997433 234555555 45999987432 246799884 5689999999999
Q ss_pred HHhhC
Q 013521 437 LKNFL 441 (441)
Q Consensus 437 l~~~l 441 (441)
|.++|
T Consensus 406 l~~~l 410 (412)
T TIGR02407 406 LEQAV 410 (412)
T ss_pred HHHHH
Confidence 98864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-17 Score=159.57 Aligned_cols=217 Identities=15% Similarity=0.162 Sum_probs=145.1
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH----HHHhcccccccccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT----SVIVGQAGKFLKET 188 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~~ 188 (441)
+-...|.+.+|++. + .+..+.++++++|+.+ +..++++||+|+++.++|.+.... +...|
T Consensus 61 Ptv~~lE~~la~le----g--~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~G--------- 125 (432)
T PRK06702 61 PTLAAFEQKLAELE----G--GVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLG--------- 125 (432)
T ss_pred cHHHHHHHHHHHHh----C--CCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCC---------
Confidence 34677888888875 3 2457889999999997 677899999999999999876665 45556
Q ss_pred CccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC
Q 013521 189 GKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR 266 (441)
Q Consensus 189 ~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~ 266 (441)
++++++....+ ..++++ .+++|+|++.+|+||++.+.+ +++|+++|++||+++|+|++|.. |
T Consensus 126 ---i~v~~vd~~~d---~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~t------P- 189 (432)
T PRK06702 126 ---IDVTFFNPNLT---ADEIVALANDKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLAT------P- 189 (432)
T ss_pred ---CEEEEECCCCC---HHHHHHhCCcCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCc------h-
Confidence 57777754211 011221 478999999999999999999 99999999999999999999862 2
Q ss_pred cccc-cCCCcceeEEEecCCc-----ccCCcccee-----EEEEeeccccccCCch---------------hHHHHHHHH
Q 013521 267 SIYE-IPGAREVAIEISSFSK-----FAGFTGVRL-----GWTVVPEELRYSNGYP---------------VIKDFNRIV 320 (441)
Q Consensus 267 ~~~~-~~~~~~~~i~i~S~SK-----~~~~~G~r~-----G~l~~~~~~~~~~~~~---------------~~~~~~~~~ 320 (441)
.+.. ++ .+-.|++.|+|| ..+++|.++ +|...+...+...... ..+......
T Consensus 190 ~~~~pl~--~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
T PRK06702 190 YLCQAFE--HGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLL 267 (432)
T ss_pred hhCChhh--cCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHH
Confidence 1111 11 122399999999 666777776 5655443322110000 000111112
Q ss_pred hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 321 CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 321 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
.......+++....+..-|+ .+..+.++.+++...+.+.|+++
T Consensus 268 ~~~g~~~sp~~a~l~~rgL~-----Tl~lR~~r~~~Na~~la~~L~~~ 310 (432)
T PRK06702 268 RDYGNCMSPFNAYISNIGLE-----TLHLRMERHSENALAVAKWLADH 310 (432)
T ss_pred HHccCCCCHHHHHHHHhccC-----cHHHHHHHHHHHHHHHHHHHHhC
Confidence 22234566666544444443 34566667779999999999987
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-17 Score=158.36 Aligned_cols=303 Identities=16% Similarity=0.123 Sum_probs=188.6
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEEe
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAVQ 164 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv~ 164 (441)
.+...+++.+.+.. +. |.......++++++|+++ +. ++.++++|+++|+.+ +..+ +++||+|+++
T Consensus 9 ~~~~~~~v~~~~~~-----~~--~~~g~~~~~le~~la~~~----g~--~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~ 75 (380)
T TIGR03588 9 DQDDIDAVVEVLKS-----DF--LTQGPTVPAFEEALAEYV----GA--KYAVAFNSATSALHIACLALGVGPGDRVWTT 75 (380)
T ss_pred CHHHHHHHHHHHhc-----CC--ccCChhHHHHHHHHHHHH----CC--CeEEEEcCHHHHHHHHHHHcCCCCCCEEEeC
Confidence 34557777776653 22 223446789999999997 44 345666778899987 5666 6899999999
Q ss_pred CCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C----CCccEEEEcCCCCccccCCCHHH
Q 013521 165 DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T----SRTDIIFFCSPNNPTGHAATWQQ 235 (441)
Q Consensus 165 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~----~~~~~v~i~~p~NPtG~~~~~~~ 235 (441)
.|+|+++...+...| .+++.++++++ .+..+++. . +++++|++ .|++|...+
T Consensus 76 ~~~~~~~~~~~~~~G------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~--- 136 (380)
T TIGR03588 76 PITFVATANCALYCG------------AKVDFVDIDPD-TGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVD--- 136 (380)
T ss_pred CcchHHHHHHHHHcC------------CEEEEEecCCC-cCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCC---
Confidence 999999988888888 58999998754 23333221 2 57888876 456898877
Q ss_pred HHHHHHHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecCC--cccCCccceeEEEEeeccccccCCchh
Q 013521 236 LKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVPEELRYSNGYPV 312 (441)
Q Consensus 236 ~~~i~~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~~~~~~~~~~~~ 312 (441)
+++|.++|++||++||+|++++... +++.+ +... ... .+.+.||+ |.++ .| ..|+++.+++.+
T Consensus 137 ~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~--~g~~-~~~--d~~~~S~~~~K~~~-~~-~GG~v~~~~~~~------- 202 (380)
T TIGR03588 137 MQAIAALAKKHGLKIIEDASHALGAEYGGKP--VGNC-RYA--DATVFSFHPVKIIT-TA-EGGAVTTNDEEL------- 202 (380)
T ss_pred HHHHHHHHHHcCCEEEEECCCcccCccCCEe--CCCc-ccc--ceEEEecCCCCccc-cc-CceEEEECCHHH-------
Confidence 8899999999999999999998532 23212 2111 012 36777775 8886 33 468888765543
Q ss_pred HHHHHHHHhhhcC-------------------------CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 013521 313 IKDFNRIVCTCFN-------------------------GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 313 ~~~~~~~~~~~~~-------------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 367 (441)
.+++...+..... ..+.+....+... .+.+++..++-+++.+++.+.|.+
T Consensus 203 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~q-----L~~l~~~~~~r~~~~~~~~~~L~~ 277 (380)
T TIGR03588 203 AERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQ-----LKKLDRFVAKRREIAARYDRLLKD 277 (380)
T ss_pred HHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333332221100 0111211112222 233566677777788888888887
Q ss_pred C-CCeeeCCC-C---ceE-EEEEcC---CCChHHHHHHHHHhcCeEEeCCCC-------cCC---CC---------CCeE
Q 013521 368 L-GLKVNGGK-N---APY-VWVQFP---GSSSWDVFAEILEKTHILTIPGSG-------FGP---GG---------NEHI 419 (441)
Q Consensus 368 ~-g~~~~~~~-~---~~~-~~~~~~---~~~~~~~~~~ll~~~gi~v~pg~~-------f~~---~~---------~~~i 419 (441)
+ ++....+. + .++ ..+.++ +....++.+.| +++||.+++... |.. .. ...|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l 356 (380)
T TIGR03588 278 LPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEAL-RAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEI 356 (380)
T ss_pred CCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHH-HHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceE
Confidence 6 44433221 1 122 223333 23455666665 566998874321 100 00 1567
Q ss_pred EEEee--cCHHHHHHHHHHHHhhC
Q 013521 420 RVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 420 Rls~~--~~~~~~~~~l~~l~~~l 441 (441)
++.+. .++++++..++.|+++|
T Consensus 357 ~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 357 SLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHhC
Confidence 77763 37899999999999875
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-17 Score=158.31 Aligned_cols=332 Identities=14% Similarity=0.082 Sum_probs=192.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHH-hhccCCCCCCCC-CCCcCcHHHHH----HHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHA-FALSTVKGYKGY-GAEQGNMALRT----AIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~-~~~~~~~~~~~Y-~~~~g~~~lr~----~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
+.++|-.+++- .+|.+.+++...+ .+++......++ +-.+...+|.+ .+++++ +.+ ..++.+++++.
T Consensus 29 ~~~~l~~sen~--~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~----g~~-~alv~~~SG~~ 101 (416)
T PRK13034 29 DHLELIASENF--TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLF----GCD-YANVQPHSGSQ 101 (416)
T ss_pred cCeeecccccC--CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHh----CCC-ceEEecCCcHH
Confidence 45777666543 4788999999985 655432222222 11233556666 777765 544 33344556566
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhh-HhHHHH--hccccccccccCccceeEEeecCCCCCccCCC---CC---CCCcc
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAY-IDTSVI--VGQAGKFLKETGKYRNIVYMNCRPENNFFPDL---ST---TSRTD 216 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~-~~~~~~--~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~~---~~~~~ 216 (441)
|+.. +..+++|||+|+++..+|.+. ...+.. .+. ..+...++++.. ....|+ ++ ..+++
T Consensus 102 A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~----------~~~~~~~~~~~~-~~~~d~~~le~~l~~~~~k 170 (416)
T PRK13034 102 ANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGK----------WYNAVQYGVDRL-TGLIDYDEVEELAKEHKPK 170 (416)
T ss_pred HHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccc----------eeeeEEcccccc-cCCcCHHHHHHHHhhcCCe
Confidence 7665 788899999999999999762 211111 010 012233444322 111221 11 23678
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
+|++.++. +|...+ +.+|.++|++||+++|+|++|+...... +.....+ .+..++++|++|.++.+ .-|
T Consensus 171 lVi~~~~~--~g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~~-g~~~~~~---~~~Di~~~s~~K~l~g~--~GG 239 (416)
T PRK13034 171 LIIAGFSA--YPRELD---FARFREIADEVGALLMVDMAHIAGLVAA-GEHPNPF---PHAHVVTTTTHKTLRGP--RGG 239 (416)
T ss_pred EEEECCCc--cccccC---HHHHHHHHHHcCCEEEEeCcccccCccc-CCCCCCC---CCceEEEEeCcccCCCC--CCe
Confidence 88775654 455556 7788888999999999999988533321 1111112 12458999999999422 248
Q ss_pred EEEeeccccccCCchhHHHHHHHHhhhcCC-CcHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNG-ASNIVQAGGL-ACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
+++++++.+ ...+.......+.+ ..++...++. ++++... ....++++++.++.+++.+.|.+.|+.+..
T Consensus 240 ~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~-~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~ 311 (416)
T PRK13034 240 MILTNDEEI-------AKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQ-PEFKTYAKQVIANAQALAEVLKERGYDLVS 311 (416)
T ss_pred EEEECcHHH-------HHHHHhhcCCcccCCccHHHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHcCCEecc
Confidence 887766553 22222211111111 2222222222 2222111 112456788999999999999988988754
Q ss_pred C-CCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCC-C--c-CCCCCCeEEEEe------ecCHHHHHHHHHHHHhhC
Q 013521 375 G-KNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGS-G--F-GPGGNEHIRVSA------FGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~-~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~-~--f-~~~~~~~iRls~------~~~~~~~~~~l~~l~~~l 441 (441)
+ ..++.+++.+.. ......+...|+++||.+.+-. . + .+..+..+|+++ ..++++++++++.|++++
T Consensus 312 ~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~ 390 (416)
T PRK13034 312 GGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVL 390 (416)
T ss_pred CCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 2 457778888763 2244445455666799997511 1 1 122356799994 235899999999998753
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-16 Score=156.98 Aligned_cols=340 Identities=12% Similarity=0.098 Sum_probs=202.7
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~ 145 (441)
.++.++|+..|- ..+ ..+|.+.+++.+.+.+.. .+.......+.+..+|+.+.+..+.. .+.++++++++
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~------~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs 127 (443)
T PRK06058 54 DGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFT------HTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGA 127 (443)
T ss_pred CCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhcc------CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcH
Confidence 456788887664 222 367899999999987531 11111123455666666665433322 25788888889
Q ss_pred HHHHH-HH--HhcCCCCEEEEeCCCchhhHhHHHHhcc-c----cccccccCccceeEEeecCCC-CC---ccC------
Q 013521 146 SDISR-LQ--MLLGSNVTVAVQDPSFPAYIDTSVIVGQ-A----GKFLKETGKYRNIVYMNCRPE-NN---FFP------ 207 (441)
Q Consensus 146 ~al~~-l~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~-~----~~~~~~~~~~~~v~~v~~~~~-~~---~~~------ 207 (441)
+|+.. +. ......++|+...++|++....+..... . ..+.+.. ..+..++.... .. ...
T Consensus 128 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (443)
T PRK06058 128 EAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFA---PEVYRAPMSYPYRDPKGLATDGEEAA 204 (443)
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCC---CCceEcCCCcccccccccccchHHHH
Confidence 99886 42 2333457899999999998655443321 0 0000000 11222221110 00 000
Q ss_pred -----CCC---CCCCccEEEEcCCCCcc-ccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcce
Q 013521 208 -----DLS---TTSRTDIIFFCSPNNPT-GHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV 277 (441)
Q Consensus 208 -----~~~---~~~~~~~v~i~~p~NPt-G~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
.++ ...++.+++ ..|-++. |.. .+++.+++|.++|++||+++|.||++..|...+.......+.-.||
T Consensus 205 ~~~~~~l~~~~~~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PD- 282 (443)
T PRK06058 205 ARAITVIEKQVGADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPD- 282 (443)
T ss_pred HHHHHHHHHhhCCCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCC-
Confidence 011 123555544 6885555 444 4688999999999999999999999997755442211122222344
Q ss_pred eEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 013521 278 AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKEN 357 (441)
Q Consensus 278 ~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 357 (441)
+ -+++|.+| .|+++|++++++++. +.+.......+.+.+++++.++.+.|+.-.. +++.++.+++
T Consensus 283 -i--v~~gK~l~-~G~Pi~av~~~~~i~--------~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~---~~l~~~~~~~ 347 (443)
T PRK06058 283 -L--ITTAKGIA-GGLPLSAVTGRAEIM--------DAPHPGGLGGTYGGNPVACAAALAAIETIEE---DDLVARARQI 347 (443)
T ss_pred -E--EEEccccc-CCCccEEEEEcHHHH--------hhccCCCCCCCCCCCHHHHHHHHHHHHHHHH---cCHHHHHHHH
Confidence 2 24689998 999999999988873 3333222334556789999999998862111 3455666666
Q ss_pred HHHHHHHHHhC----CCee-eCCCCceEEEEEcCCC----Ch----HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--
Q 013521 358 AKIIVDAFQSL----GLKV-NGGKNAPYVWVQFPGS----SS----WDVFAEILEKTHILTIPGSGFGPGGNEHIRVS-- 422 (441)
Q Consensus 358 ~~~l~~~L~~~----g~~~-~~~~~~~~~~~~~~~~----~~----~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls-- 422 (441)
.+++.+.|+++ ++.. .. ..|.++.+.+... .+ ..+...++ ++||.+.|+..|+ +.||+.
T Consensus 348 g~~l~~~L~~l~~~~~~i~~vr-g~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~~~~~~~~~----~~lr~~Pp 421 (443)
T PRK06058 348 EALMTDRLRALAAEDDRIGDVR-GRGAMIAIELVKPGTTEPDAELTKALAAAAH-AAGVIVLTCGTYG----NVIRLLPP 421 (443)
T ss_pred HHHHHHHHHHHHhhCCcEEeee-ccceEEEEEEecCCCCCCcHHHHHHHHHHHH-HCCeEEeccCCCC----CEEEEECC
Confidence 67777777653 3211 22 2455555555311 11 22344444 4599999875443 589996
Q ss_pred eecCHHHHHHHHHHHHhhC
Q 013521 423 AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 423 ~~~~~~~~~~~l~~l~~~l 441 (441)
+..+++++++++++|.+++
T Consensus 422 l~~t~~~i~~~~~~l~~~l 440 (443)
T PRK06058 422 LVIGDELLREGLDVLEAAL 440 (443)
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 6679999999999998864
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-16 Score=158.41 Aligned_cols=345 Identities=12% Similarity=0.083 Sum_probs=197.4
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhcc-CCCCCCCCCC-CcCcHH----HHHHHHHHHhhhCCCCCCcEEEc---CC
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALS-TVKGYKGYGA-EQGNMA----LRTAIADKFYKDMGIEGDEIFIS---DG 143 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~-~~~~~~~Y~~-~~g~~~----lr~~ia~~l~~~~~~~~~~I~~t---~G 143 (441)
..|+|-.+++- .++.+.+++...+.... .......|.. ..-... .|+.+++. ++.+++++.++ ++
T Consensus 35 ~~l~l~~sen~--~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~l----f~a~~~~~~~~~~~~s 108 (452)
T PTZ00094 35 EGLELIASENF--TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEA----FGLDPEEWGVNVQPYS 108 (452)
T ss_pred cCeeEeccccc--CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHH----hCCCcccceeecCCCc
Confidence 56888877763 56888889988875332 0111112221 111222 23344444 57888887666 67
Q ss_pred cHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC---CCCccEE
Q 013521 144 AQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST---TSRTDII 218 (441)
Q Consensus 144 ~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~---~~~~~~v 218 (441)
++++..+ +.+++++||.|++....|.+............. .......++..++++.++..+.+ +++ ..+++++
T Consensus 109 gt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~--~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lv 186 (452)
T PTZ00094 109 GSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKV--SATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLI 186 (452)
T ss_pred hHHHHHHHHHHhcCCCCEEEecccccCCccccccccccccc--ccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEE
Confidence 7778776 788899999999988888776543321110000 00000124455555544332222 111 2367776
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++. ++.+|...| +++|.++|+++|+++++|++++-...... +...+ ..+..+++.|++|+++ |.+.|++
T Consensus 187 i~~--~s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~---~~~~~-~~~~D~l~~S~hK~l~--GP~Gg~l 255 (452)
T PTZ00094 187 IAG--ASAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAG---VLPSP-FPYADVVTTTTHKSLR--GPRSGLI 255 (452)
T ss_pred EEe--CCCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCC---CCCCC-CCCCcEEEcCCccCCC--CCCceEE
Confidence 653 334999999 77888889999999999999984332211 11111 1133489999999873 3345888
Q ss_pred EeeccccccCCchhHHHHHHHHhhhc-CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-
Q 013521 299 VVPEELRYSNGYPVIKDFNRIVCTCF-NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK- 376 (441)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~- 376 (441)
+++++.... +...+.......+ .+.+.....+..++++.-.....+..++++.++.+++.+.|.+.|+++..+.
T Consensus 256 ~~~~~~~~~----l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~ 331 (452)
T PTZ00094 256 FYRKKVKPD----IENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGT 331 (452)
T ss_pred EEecccchH----HHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCC
Confidence 887654210 0111110000111 1223333333333343111123466778899999999999988888776422
Q ss_pred CceEEEEEcC--CCChHHHHHHHHHhcCeEEe-CCCCcCC--CCCCeEEEEe--ecC----HHHHHHHHHHHHhhC
Q 013521 377 NAPYVWVQFP--GSSSWDVFAEILEKTHILTI-PGSGFGP--GGNEHIRVSA--FGH----REYISEACRRLKNFL 441 (441)
Q Consensus 377 ~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~-pg~~f~~--~~~~~iRls~--~~~----~~~~~~~l~~l~~~l 441 (441)
....+++.+. +.+. +.+..+|+++||.+. ++-.+.. ..+++||+++ .++ +++++++++.|.+++
T Consensus 332 ~~~~~~v~~~~~~~~~-~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~ 406 (452)
T PTZ00094 332 DNHLVLVDLRPFGITG-SKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAV 406 (452)
T ss_pred CCceEeecCCcCCCCH-HHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 2334555554 3333 445555677799994 4443321 2357899995 333 899999999988753
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=141.59 Aligned_cols=318 Identities=16% Similarity=0.174 Sum_probs=212.9
Q ss_pred CCCeEEeCCCCCC-CCCcHHHHHHHHHHHhhccCC-CCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEE--EcCCc
Q 013521 71 DARLIRLGIGDTT-QPIPDIITSAMAEHAFALSTV-KGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIF--ISDGA 144 (441)
Q Consensus 71 ~~~~i~l~~g~~~-~~~~~~~~~al~~~~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~--~t~G~ 144 (441)
++.-++|++|.+- -...|+++..+.+.-..+.+. ...+.|-|-.|.+.++++.++.+.+ ...+..++++ -+-++
T Consensus 29 ~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsG 108 (410)
T KOG1412|consen 29 DPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATELLLGADSPAIKEDRVFGVQSLSG 108 (410)
T ss_pred CcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhhhHHHhcCCCchhhhhccccceeeccc
Confidence 4557899999753 234556665665554444322 3345799999999999999998743 2223344422 23334
Q ss_pred HHHHHH----HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-------CCCCC
Q 013521 145 QSDISR----LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-------LSTTS 213 (441)
Q Consensus 145 ~~al~~----l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-------~~~~~ 213 (441)
+.|+.+ +..++. ...|.+..|+|.....++..+|. ..+...+.-+.+.-..| ++..+
T Consensus 109 TGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~if~~aGf-----------~tv~~Y~yWd~~~k~~d~e~~Lsdl~~AP 176 (410)
T KOG1412|consen 109 TGALRIAADFLATFYN-KNTVYVSNPTWENHHAIFEKAGF-----------TTVATYPYWDAENKCVDLEGFLSDLESAP 176 (410)
T ss_pred cchhhhhHHHHHHhcc-cceeEecCCchhHHHHHHHHcCC-----------ceeeeeeeecCCCceecHHHHHHHHhhCC
Confidence 445443 334444 56799999999999999999984 24444444333332333 34445
Q ss_pred CccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc---CCCcceeEEEecCCcccC
Q 013521 214 RTDIIFFCSP-NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI---PGAREVAIEISSFSKFAG 289 (441)
Q Consensus 214 ~~~~v~i~~p-~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~---~~~~~~~i~i~S~SK~~~ 289 (441)
.-..++++.. |||||.-.+.|++.+|+++.++.+.+.+.|-+|..|..++.....+++ -....-.+++.||+|.||
T Consensus 177 e~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfG 256 (410)
T KOG1412|consen 177 EGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFG 256 (410)
T ss_pred CCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcc
Confidence 5555566544 999999999999999999999999999999999998876543222221 111234799999999999
Q ss_pred CccceeEEEE--eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTV--VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-----QALRTVIDYYKENAKIIV 362 (441)
Q Consensus 290 ~~G~r~G~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~ 362 (441)
+-+-|+|-+. +.+... ...+..++..+....+..++......+...|+.... ..++.+-.++++.|..|+
T Consensus 257 lYneRvGnltvv~~n~a~---i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLr 333 (410)
T KOG1412|consen 257 LYNERVGNLTVVVNNPAV---IAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALR 333 (410)
T ss_pred cccccccceEEEecChhH---HHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999554 333331 122334555555666777778888888888885543 346677778888888898
Q ss_pred HHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeC
Q 013521 363 DAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP 407 (441)
Q Consensus 363 ~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 407 (441)
+.|..++ |.....+-|+|-+-.+ + ...++.|.+++.|++.+
T Consensus 334 d~L~aL~TPGtWDHI~~QiGMFSyTGL---t-p~qV~~li~~h~vyLl~ 378 (410)
T KOG1412|consen 334 DHLVALKTPGTWDHITQQIGMFSYTGL---T-PAQVDHLIENHKVYLLS 378 (410)
T ss_pred HHHHhcCCCCcHHHHHhhccceeecCC---C-HHHHHHHHHhceEEEec
Confidence 8888773 3333445677766554 2 35678889999999876
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-16 Score=154.01 Aligned_cols=318 Identities=14% Similarity=0.077 Sum_probs=194.3
Q ss_pred EEeCCCCCCCCCcHH-HHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCC-CCcEEEcC-CcHHHHH
Q 013521 75 IRLGIGDTTQPIPDI-ITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIE-GDEIFISD-GAQSDIS 149 (441)
Q Consensus 75 i~l~~g~~~~~~~~~-~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~-G~~~al~ 149 (441)
++|..|. ..+++. +++++.+.... ..+..+ ..-..+.|+.+++++ +++ +++|++++ |+|.+++
T Consensus 14 ~~f~~Gp--~~~~~~~v~~a~~~~~~~------~~hr~~~f~~~~~~~r~~l~~l~----~~~~~~~v~~~~gs~T~~~~ 81 (378)
T PRK03080 14 PRFSSGP--CKKRPGWQLEALADALLG------RSHRQKPVKALLKRVIEGTRELL----SLPEGYEVGIVPGSDTGAWE 81 (378)
T ss_pred CCcCCCC--cCCChHHHHHHHHhhhcc------cCcCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEECCchHHHHH
Confidence 4455453 234555 89998865421 112221 234455666666664 764 45899886 8899999
Q ss_pred H-HHHhcCC-CCEEEEeCCCchhh-Hh-HHHHhccccccccccCccc-eeEEeecCCCCCccCCCCCCCCccEEEEcCCC
Q 013521 150 R-LQMLLGS-NVTVAVQDPSFPAY-ID-TSVIVGQAGKFLKETGKYR-NIVYMNCRPENNFFPDLSTTSRTDIIFFCSPN 224 (441)
Q Consensus 150 ~-l~~l~~~-gd~Vlv~~p~y~~~-~~-~~~~~g~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~ 224 (441)
. +..++++ ++.|++ .-.|+.- .. +.+..| . +++.++.++.. .+++++...++.|.+++.+
T Consensus 82 ~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~g------------~~~v~~~~~~~g~--~~d~~~i~~~~~V~~~h~~ 146 (378)
T PRK03080 82 MALWSLLGARRVDHLA-WESFGSKWATDVVKQLK------------LEDPRVLEADYGS--LPDLSAVDFDRDVVFTWNG 146 (378)
T ss_pred HHHHhcCCCCcceEEE-eCHHHHHHHHHHHhhcC------------CCCceEeccCCCC--CCCHhhcCCCCCEEEEecC
Confidence 7 6777774 445544 4455442 11 113345 4 66777665432 3344333336678888889
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
|.||..+| +++|++ +++|+++|+|.+.+-... |..+.. ..+++.|..|+++ +...+|+++++++.
T Consensus 147 t~tG~~~p---i~~I~~--~~~g~~~vVDa~qs~G~~---pidv~~------iD~~~~s~~K~l~-~P~G~g~l~v~~~~ 211 (378)
T PRK03080 147 TTTGVRVP---VARWIG--ADREGLTICDATSAAFAL---PLDWSK------LDVYTFSWQKVLG-GEGGHGMAILSPRA 211 (378)
T ss_pred Cccceecc---chhhcc--ccCCCeEEEecccccccC---CCCHHH------CcEEEEehhhhCC-CCCceEEEEECHHH
Confidence 99999999 667777 789999999999873221 333322 2499999999986 33459999998877
Q ss_pred cccCCchh-----------HH---HHH-HHHhhhcCCCcHHHH---HHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHH
Q 013521 305 RYSNGYPV-----------IK---DFN-RIVCTCFNGASNIVQ---AGGLACLSPD-GFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 305 ~~~~~~~~-----------~~---~~~-~~~~~~~~~~~~~~~---~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
+....+.. .. ... +....+.++++.... .+++..+.+. + ++++.++.++..+++++.|
T Consensus 212 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG---~e~i~~r~~~l~~~l~~~l 288 (378)
T PRK03080 212 VERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGG---LDALIARTAANASVLYDWA 288 (378)
T ss_pred HHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHH
Confidence 53211100 00 011 111112233443333 3344444433 3 4777888888999999999
Q ss_pred HhCC-CeeeC--C--CCceEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHH
Q 013521 366 QSLG-LKVNG--G--KNAPYVWVQFPG---SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACR 435 (441)
Q Consensus 366 ~~~g-~~~~~--~--~~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~ 435 (441)
++.+ +.+.. + ..+..+.+.+++ ..+.++...++++ ||.+..|.. .. ..+.+|+|+ ++++++++.+++
T Consensus 289 ~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~-~i~v~~g~~-~~-~~~~vRis~~~~~t~~di~~l~~ 365 (378)
T PRK03080 289 EKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRE-NGAVDIEPY-RD-APNGLRIWCGPTVEPADVEALTP 365 (378)
T ss_pred HhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHc-CCeeccccc-cC-CCCcEEEecCCCCCHHHHHHHHH
Confidence 9884 55542 1 123456677765 2344566777765 888887653 22 347899996 568999999999
Q ss_pred HHHhh
Q 013521 436 RLKNF 440 (441)
Q Consensus 436 ~l~~~ 440 (441)
.|+++
T Consensus 366 al~~~ 370 (378)
T PRK03080 366 WLDWA 370 (378)
T ss_pred HHHHH
Confidence 99875
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-18 Score=151.33 Aligned_cols=325 Identities=15% Similarity=0.179 Sum_probs=216.6
Q ss_pred hcCCCCCeEEeCCCCCC-C---C-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-hCC-CCCCcEE
Q 013521 67 RKHPDARLIRLGIGDTT-Q---P-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-DMG-IEGDEIF 139 (441)
Q Consensus 67 ~~~~~~~~i~l~~g~~~-~---~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~-~~~~~I~ 139 (441)
.+.+...-+||+.|.+- - | .-+.|.+|-++.+. ......|-|..|.+++.+..++++.. +.. +...+|+
T Consensus 47 k~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~----~~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~ 122 (427)
T KOG1411|consen 47 KKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLAS----LSLDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIV 122 (427)
T ss_pred hcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhh----hcccchhccccchHHHHHHHHHHhhcCCchhhhcccee
Confidence 34455678999999762 1 2 23455555554443 24455899999999999999998753 222 2334444
Q ss_pred Ec--CCcHHHHHH---HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCC
Q 013521 140 IS--DGAQSDISR---LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSR 214 (441)
Q Consensus 140 ~t--~G~~~al~~---l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 214 (441)
.+ -++|.++.+ +...+-++..|.+++|+|.+...++...|.. ...++|.......+|.+ ++..|+...+.
T Consensus 123 tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~----~~~yrYyd~~t~gld~~-g~ledl~~~p~ 197 (427)
T KOG1411|consen 123 TVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLP----VKFYRYYDPKTRGLDFK-GMLEDLGEAPE 197 (427)
T ss_pred EEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcc----eeeeeeccccccccchH-HHHHHHhcCCC
Confidence 32 233444443 4445567889999999999999999988831 11111112222222221 22333433344
Q ss_pred ccEEEEc-CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC---CCcccccCCCcceeEEEecCCcccCC
Q 013521 215 TDIIFFC-SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS---PRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 215 ~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~---~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
-..|++- -.|||||+--+.+++++|.++.++.+.+-+.|-+|..|..++. ..++..+......++++.||.|.+|+
T Consensus 198 gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGL 277 (427)
T KOG1411|consen 198 GSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGL 277 (427)
T ss_pred CcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcch
Confidence 4444444 3399999999999999999999999999999999998876543 23333333334667999999999999
Q ss_pred ccceeEEE--EeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWT--VVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-----QALRTVIDYYKENAKIIVD 363 (441)
Q Consensus 291 ~G~r~G~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~ 363 (441)
-|-|+|.+ +|.+... ..++..++..+....+.+++......+...+.+... ..++.+.+++...|+.+.+
T Consensus 278 YgERvGa~svvc~~ad~---A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d 354 (427)
T KOG1411|consen 278 YGERVGALSVVCKDADE---AKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFD 354 (427)
T ss_pred hhhccceeEEEecCHHH---HHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhH
Confidence 99999965 4544332 222344555566666777777777777788886543 3467788888899999999
Q ss_pred HHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeC
Q 013521 364 AFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP 407 (441)
Q Consensus 364 ~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 407 (441)
.|+..| +.....+-|+|.+-.+. .+.++.+.+++.|++..
T Consensus 355 ~L~~~gs~~~W~hI~~QIGMF~fTgl~----peQv~~l~ke~~iYmT~ 398 (427)
T KOG1411|consen 355 ALEKEGSPGNWSHITKQIGMFCFTGLN----PEQVDWLTKEYHIYLTK 398 (427)
T ss_pred HhhcCCCCccHHHHHHhhheeeecCCC----HHHHHHHHhhheeeecc
Confidence 998763 33344566888876653 47788999999998853
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=147.34 Aligned_cols=334 Identities=16% Similarity=0.163 Sum_probs=214.4
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..|||-.|- ..+ ..+|.+++++.+.+.++.. ....|. .+.+.++|+.|.+..+ ..+.|+++|++++
T Consensus 40 ~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h--~sn~~~-----~~~~~~la~~L~~~s~-~~d~vff~NSGaE 111 (404)
T COG4992 40 QGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH--VSNLFY-----NEPQAELAEKLVELSP-FADRVFFCNSGAE 111 (404)
T ss_pred CCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhh--cccccC-----ChHHHHHHHHHHhhCc-cccEEEEcCCcHH
Confidence 356788877664 333 4789999999998887652 122232 2355566666654334 5899999999999
Q ss_pred HHHH-H--HHhc-C-C-CCEEEEeCCCchhhHhHHHHhccccc----cccccCccceeEEeecCCCCCccCCCCCCCCcc
Q 013521 147 DISR-L--QMLL-G-S-NVTVAVQDPSFPAYIDTSVIVGQAGK----FLKETGKYRNIVYMNCRPENNFFPDLSTTSRTD 216 (441)
Q Consensus 147 al~~-l--~~l~-~-~-gd~Vlv~~p~y~~~~~~~~~~g~~~~----~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~ 216 (441)
|++. + .+.. . + ..+|+....+|++-.-..-..+.+.. |.+.. -.+..+|.++-+.+...+ .+++.
T Consensus 112 A~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~---~g~~~vpfnDi~al~~ai--~~~ta 186 (404)
T COG4992 112 ANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLL---PGFRHVPFNDIEALEAAI--DEDTA 186 (404)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCC---CCceecCCCCHHHHHHHh--ccCeE
Confidence 9986 3 2233 2 2 24788888888875333322322211 11110 134444432211111001 24777
Q ss_pred EEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce
Q 013521 217 IIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 217 ~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
+|++ -| |--.|+. .+++.++++.++|++||+++|.||+...+...+......++.-.|| |-++.|.+| .|+.
T Consensus 187 Aviv-EPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PD----I~tlaK~Lg-GG~P 260 (404)
T COG4992 187 AVIV-EPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPD----ILTLAKALG-GGFP 260 (404)
T ss_pred EEEE-ecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCC----EEEeecccc-CCcc
Confidence 7666 55 7777866 5778899999999999999999999998766654322333333455 445899998 9999
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC----C-
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL----G- 369 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g- 369 (441)
+|.+++.+.. .+.+..-...++++.|+++.+++.+.++--.. +.+.+..++..+++.+.|+++ +
T Consensus 261 igA~la~~~~--------~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~---e~ll~~v~~~g~~~~~~L~~l~~~~~~ 329 (404)
T COG4992 261 IGAMLATEEI--------ASAFTPGDHGSTFGGNPLACAVALAVLEVLLE---EGLLENVREKGEYLLQRLRELKRRYPL 329 (404)
T ss_pred ceeeEEchhh--------hhcCCCCcccCCCCcCHHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 9999998443 22233334445667899999888888862211 455566667777777777765 2
Q ss_pred CeeeCCCCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 370 LKVNGGKNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
++-.. ..|.++=+++... ...++++.+.++ |+++.+. +++.||+. +..+++++++++++|++++
T Consensus 330 v~~vR-G~GLmiGiel~~~~~a~~~~~~~~~~-gvL~~~a------~~~ViR~~PpL~i~~eei~~~~~~l~~~l 396 (404)
T COG4992 330 VKEVR-GRGLMIGIELKEPYRARDIVRALREE-GVLVLPA------GPNVIRFLPPLVITEEEIDEALDALERAL 396 (404)
T ss_pred eeeee-cceeEEEEEecCcccHHHHHHHHHHC-CeEEecC------CCCeEEecCCccCCHHHHHHHHHHHHHHH
Confidence 12122 2567777777532 356666666655 9999874 35689998 5668999999999998764
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-16 Score=148.88 Aligned_cols=321 Identities=14% Similarity=0.126 Sum_probs=195.5
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCC---CcCcHHHHHHHHHHHhhhCCCC-CCcEEEcC-CcHHHHHH-HHHhcC
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGA---EQGNMALRTAIADKFYKDMGIE-GDEIFISD-GAQSDISR-LQMLLG 156 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~-G~~~al~~-l~~l~~ 156 (441)
+.+.|+.+++++.+.+.++.. .+...+.. ..-..++-+.+.+.+.+-++.+ ..+|++++ +++.+++. +..++.
T Consensus 11 P~~~p~~V~~a~~~~~~~~~~-~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~ 89 (360)
T PRK05355 11 PAMLPEEVLEQAQQELLDWNG-SGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG 89 (360)
T ss_pred CCCCCHHHHHHHHHHhhcccc-CCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC
Confidence 346789999999998755431 22222211 1122244444444444445763 34676664 55566887 788999
Q ss_pred CCCEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCc--cCCCCC---CCCccEEEEcCCCCcccc
Q 013521 157 SNVTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF--FPDLST---TSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 157 ~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~--~~~~~~---~~~~~~v~i~~p~NPtG~ 229 (441)
+||++++..-+..+. .++++.+|. . ..+..++..+. .+++++ .+++++|.+++..|.||.
T Consensus 90 ~g~~~l~i~~G~fg~r~~~~a~~~g~------------~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv 156 (360)
T PRK05355 90 GGKKADYVDTGSWSKKAIKEAKKYGE------------V-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGT 156 (360)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCC------------c-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCcceE
Confidence 999999888777664 445555552 2 34433321111 222211 247899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~ 309 (441)
..+ .+.+| +|+++|+|.+.+-. ..+..+..+ + +++.|..|.+|.+| +|+++++++.+....
T Consensus 157 ~~~--~i~~i------~g~l~vVDavss~g---~~~idv~~~----d--~~~~ssqK~lgP~G--lg~l~~s~~~l~~~~ 217 (360)
T PRK05355 157 EFH--ELPDT------GDVPLVADMSSDIL---SRPIDVSKF----G--LIYAGAQKNIGPAG--LTIVIVREDLLGRAL 217 (360)
T ss_pred ecC--ccccc------CCCcEEEEcCcccc---CccCCHHHc----c--EEEEeccccccCCc--eEEEEECHHHHhhcc
Confidence 984 25555 89999999998732 113333222 3 88999999998665 899999998864322
Q ss_pred chh--HHHHHH-HH-hhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhCCCe-eeCC---CCceE
Q 013521 310 YPV--IKDFNR-IV-CTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSLGLK-VNGG---KNAPY 380 (441)
Q Consensus 310 ~~~--~~~~~~-~~-~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~---~~~~~ 380 (441)
+.. .-.+.. .. .....+++.....+..++++.-... .++++.++.++..+++++.|+++++. ...+ .....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v 297 (360)
T PRK05355 218 PSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMN 297 (360)
T ss_pred cCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcE
Confidence 210 111111 11 1123445555544444444411112 35888899999999999999998742 2111 22345
Q ss_pred EEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
+.+.+++. ...++...+. ++|+.+.+|.. ..+.||+|+ +++.+|++.+++.|++++
T Consensus 298 ~sf~~~~~~~~~~~~~~~~-~~Gi~~~~~~~----~~g~vRiS~~~~nt~eei~~l~~~l~~~~ 356 (360)
T PRK05355 298 VPFTLADEELDKKFLAEAK-AAGLVGLKGHR----SVGGMRASIYNAMPLEGVQALVDFMKEFE 356 (360)
T ss_pred EEEEcCChHHHHHHHHHHH-HCCCcccCCCC----ccCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 77777753 2234445544 46999877653 246899997 458999999999998863
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-16 Score=143.48 Aligned_cols=310 Identities=17% Similarity=0.155 Sum_probs=189.9
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEE
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAV 163 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv 163 (441)
.+.+++.++|.++-. .+-..|+.++-...+.+.+++. ++. +.+++++++|++..+ |...++||+.|++
T Consensus 11 g~~~~m~eam~~a~~-----~~~~~YG~D~~~~~~e~~~ae~----~g~--~a~~Fv~sGT~aN~lal~~~~~~~~~vi~ 79 (342)
T COG2008 11 GPTPEMREALAAANA-----VGDDVYGEDPTTNALEQRIAEL----FGK--EAALFVPSGTQANQLALAAHCQPGESVIC 79 (342)
T ss_pred CCCHHHHHHHHhccc-----cCCCCCCCCHHHHHHHHHHHHH----hCC--ceEEEecCccHHHHHHHHHhcCCCCeEEE
Confidence 356778888888542 3334686666556666666655 455 788888888888777 8888999999999
Q ss_pred eCCCchhhHhH--HHHhccccccccccCccceeEEeecCC--CCCccCC-CCC--------CCCccEEEEcCCCCccccC
Q 013521 164 QDPSFPAYIDT--SVIVGQAGKFLKETGKYRNIVYMNCRP--ENNFFPD-LST--------TSRTDIIFFCSPNNPTGHA 230 (441)
Q Consensus 164 ~~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~-~~~--------~~~~~~v~i~~p~NPtG~~ 230 (441)
..-.|-...+. ...++ .+..++..+ ++.+.++ ++. ...+.++++.|.+|--|++
T Consensus 80 ~~~aHi~~~E~Ga~~~~~-------------~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtV 146 (342)
T COG2008 80 HETAHIYTDECGAPEFFG-------------GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTV 146 (342)
T ss_pred eccccceecccCcHHHHc-------------CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCcee
Confidence 88877544322 22233 233344433 2222221 111 1233444444555578999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe-eccccccCC
Q 013521 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV-PEELRYSNG 309 (441)
Q Consensus 231 ~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~-~~~~~~~~~ 309 (441)
+|.+++++|.++|++||+.+..|.+--........++...+...-| .+.-++||..+.|+ |.+++ +.++
T Consensus 147 y~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D--~v~~~~tK~g~~~~---gAiv~gn~~~----- 216 (342)
T COG2008 147 YPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVD--SVSFCLTKGGGAPV---GAIVFGNRDF----- 216 (342)
T ss_pred cCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCC--EEEEecccCCccee---eeEEEcCHHH-----
Confidence 9999999999999999999999998543222111244545433223 45556999987665 76664 4454
Q ss_pred chhHHHHHHHHhhhcCC--CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcC
Q 013521 310 YPVIKDFNRIVCTCFNG--ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFP 386 (441)
Q Consensus 310 ~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 386 (441)
++++...+...... -+.+...+...+|++.-+ ...-.+-.+..+.|.+.|+.. |+++..|..++.++++++
T Consensus 217 ---~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~---~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~ 290 (342)
T COG2008 217 ---AKRARRWRKRAGGLMRKARFLAAQGLYALEDDVW---RLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLP 290 (342)
T ss_pred ---HHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECC
Confidence 45555444443332 334444555666664433 222233333488899999855 999988789999999997
Q ss_pred CCC-hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 387 GSS-SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 387 ~~~-~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
... ........+...|+.+.+++ ..+|+.. ..+++++++++..+++++
T Consensus 291 ~~~i~~l~~~~~~~~~~~~~~~~~-------~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 291 ESAIEALRLAGALFYRGVLIGAHG-------EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred hHHHHHHHhhchhheeeeeccCCC-------ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 311 11111222223344443321 4689885 568999999999998753
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-16 Score=154.68 Aligned_cols=344 Identities=11% Similarity=0.081 Sum_probs=190.7
Q ss_pred CCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhC--CCCC-CcEEE-cCC
Q 013521 71 DARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDM--GIEG-DEIFI-SDG 143 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~--~~~~-~~I~~-t~G 143 (441)
++.++|+..|-. .+ ..+|.+.+++++.+........ ..+ ..+.+..+|+.+.+.. +-.. +.+++ +++
T Consensus 38 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~-~~~-----~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~s 111 (425)
T PRK09264 38 GKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHG-LDM-----HTTAKREFLETFEETILKPRGLDYKVQFTGPT 111 (425)
T ss_pred CCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccc-ccc-----CcHHHHHHHHHHHHhhcCCcCCCceEEEeCCC
Confidence 456788766632 22 3678999999998875321011 111 1234445555554311 1111 25656 578
Q ss_pred cHHHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCC----CccCCCC----C
Q 013521 144 AQSDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPEN----NFFPDLS----T 211 (441)
Q Consensus 144 ~~~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~----~~~~~~~----~ 211 (441)
+++|+.. + ........+|+....+|++....+........... .......+..+|..... +...+++ +
T Consensus 112 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~ 191 (425)
T PRK09264 112 GTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLED 191 (425)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHh
Confidence 8888875 3 22233446788899999997544433321110000 00000134444442110 0000111 1
Q ss_pred C----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC
Q 013521 212 T----SRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285 (441)
Q Consensus 212 ~----~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 285 (441)
. +++.+|+ ..| +.-.|. +.|++.+++|.++|++||+++|+||++..|...+.........-.+| +.++|
T Consensus 192 ~~~~~~~~aavi-~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PD----i~t~~ 266 (425)
T PRK09264 192 SSSGVDLPAAVI-VETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPD----IVTLS 266 (425)
T ss_pred ccCCCCceEEEE-EecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCC----EEEec
Confidence 1 2345544 456 555676 56899999999999999999999999987644332211112221344 34789
Q ss_pred cccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 286 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
|.++..|+++|++++++++. .+.........+.++++..++.+.+.+. . .-....++.+++.+.+.+.|
T Consensus 267 K~l~~~G~pigav~~~~~i~---------~~~~~~~~~T~~gnp~~~aaa~a~l~~~-~-~~~~l~~~~~~~g~~l~~~l 335 (425)
T PRK09264 267 KSISGYGLPMALVLIKPELD---------VWKPGEHNGTFRGNNLAFVTATAALEEY-W-SDDAFEKEVKAKGELVRERL 335 (425)
T ss_pred cccCCCccceEEEEEchhhh---------ccCCCccCCCCCCCHHHHHHHHHHHHHH-H-hhhHHHHHHHHHHHHHHHHH
Confidence 99984499999999987751 1111111223345666666665666311 0 00234445555555555555
Q ss_pred Hh----CC-CeeeCCCCceEEEEEcCCCC-hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHH
Q 013521 366 QS----LG-LKVNGGKNAPYVWVQFPGSS-SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRL 437 (441)
Q Consensus 366 ~~----~g-~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l 437 (441)
++ ++ +.......|.++|+.++... ...+...+++ +||.+.+...+ ...||++. ..+++++++++++|
T Consensus 336 ~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~-~Gv~~~~~~~~----~~~lr~~p~l~~t~~ei~~~~~~l 410 (425)
T PRK09264 336 EEIAAKYPGLGAEVRGRGMMQGIDFGDGELAGKIAAEAFE-NGLIIETSGPE----DEVVKLLPPLTIDEEELEEGLDIL 410 (425)
T ss_pred HHHHHhCCCceecceecccEEEEEecChHHHHHHHHHHHH-CCCEEeccCCC----CCEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 22 21112235788899996422 3345555554 59999875432 36788884 46899999999999
Q ss_pred HhhC
Q 013521 438 KNFL 441 (441)
Q Consensus 438 ~~~l 441 (441)
.+++
T Consensus 411 ~~~l 414 (425)
T PRK09264 411 EEAV 414 (425)
T ss_pred HHHH
Confidence 8763
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-16 Score=151.65 Aligned_cols=218 Identities=19% Similarity=0.200 Sum_probs=139.7
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH----HHHhccccccccccC
Q 013521 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT----SVIVGQAGKFLKETG 189 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~~~ 189 (441)
-...|.+.+|++. +.+ ..++++++++|+.+ +..++++||+|+++.++|.+.... +...|
T Consensus 64 ~~~~le~~lA~l~----g~~--~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G---------- 127 (427)
T PRK05994 64 TNAVLEERVAALE----GGT--AALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFG---------- 127 (427)
T ss_pred cHHHHHHHHHHHh----CCC--cEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcC----------
Confidence 4577888888885 433 46677777888876 677899999999999999875443 34455
Q ss_pred ccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc
Q 013521 190 KYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY 269 (441)
Q Consensus 190 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~ 269 (441)
++++.++.++...+...+ .+++++|++++|+||||.+++ +++|+++|+++|+++|+|+++..... ..++
T Consensus 128 --~~v~~vd~~d~~~l~~ai--~~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~---~~pl- 196 (427)
T PRK05994 128 --WQVRWADADDPASFERAI--TPRTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYL---IRPI- 196 (427)
T ss_pred --cEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccccc---CCcc-
Confidence 477777654211111111 367999999999999999998 78999999999999999999973211 1112
Q ss_pred ccCCCcceeEEEecCCcccCCccceeEEEEee-ccc--cccCC--------ch-----hHHHH--------H--HHHhhh
Q 013521 270 EIPGAREVAIEISSFSKFAGFTGVRLGWTVVP-EEL--RYSNG--------YP-----VIKDF--------N--RIVCTC 323 (441)
Q Consensus 270 ~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~-~~~--~~~~~--------~~-----~~~~~--------~--~~~~~~ 323 (441)
.. +..+++.|++|.+|-+|-.+|.+++. ... ...+. .. ..+.+ . ......
T Consensus 197 ~~----gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (427)
T PRK05994 197 EH----GADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDL 272 (427)
T ss_pred cc----CCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhc
Confidence 11 23489999999998666567766653 211 00000 00 01110 0 011112
Q ss_pred cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 324 FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 324 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
....+++... ++ ..+.+.+..+.++.+++...+.+.|+++
T Consensus 273 G~~~~~~~A~----l~-~~~l~tL~~r~~~~~~~a~~la~~L~~~ 312 (427)
T PRK05994 273 GPAISPFNAF----LI-LTGIETLPLRMQRHSDNALAVAEWLKGH 312 (427)
T ss_pred CCCCCHHHHH----HH-HcCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 2223333321 22 2445556777888888999999999887
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=151.39 Aligned_cols=341 Identities=14% Similarity=0.083 Sum_probs=196.4
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|. ..+ ..+|.+.+++.+.+.+... .....|. .+.+..+|+.+.+..+...+.+++++++++
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~-----~~~~~~la~~l~~~~p~~~~~v~f~~sGse 113 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDH-VIFAGFT-----HEPAERLAQRLVALTPGGLDHVFFSDSGSV 113 (423)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCC-ccccccC-----CHHHHHHHHHHHHhCCCCCCEEEEeCCcHH
Confidence 356788887663 222 3578999999998876321 0111222 234445555554323323468999999999
Q ss_pred HHHH-HH--Hhc------CCCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCCCc---cCCCC---
Q 013521 147 DISR-LQ--MLL------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPENNF---FPDLS--- 210 (441)
Q Consensus 147 al~~-l~--~l~------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~~~---~~~~~--- 210 (441)
|+.. +. ... ....+|+...-+|++....+........... .......+..++....+.. ...++
T Consensus 114 A~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l 193 (423)
T PRK05964 114 AVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALL 193 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHH
Confidence 9886 42 222 1235899999999986544433322211000 0000012233333221100 01111
Q ss_pred -C-CCCccEEEEcCC--CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC
Q 013521 211 -T-TSRTDIIFFCSP--NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285 (441)
Q Consensus 211 -~-~~~~~~v~i~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 285 (441)
. .+++.+|++ .| ++..|... |.+.+++|.++|++||+++|+||++..+...+.........-.+| +.+++
T Consensus 194 ~~~~~~iaavi~-Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pD----i~~~~ 268 (423)
T PRK05964 194 EKHAGEIAAFIV-EPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPD----IMCLS 268 (423)
T ss_pred HhCCCcEEEEEE-ecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCC----eeeee
Confidence 1 235556555 55 77788765 899999999999999999999999987654442211111211233 34789
Q ss_pred cccCCcc-ceeEEEEeeccccccCCchhHHHHHHH------HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 013521 286 KFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI------VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENA 358 (441)
Q Consensus 286 K~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 358 (441)
|.++ .| +++|++++++++. +.+... ....+.+.++++..++.+.++.-.. +...++.++..
T Consensus 269 K~l~-gG~~p~~av~~~~~i~--------~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~---~~~~~~~~~~g 336 (423)
T PRK05964 269 KGLT-GGYLPLAATLCTAEIF--------EAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFED---EPVLERVAALS 336 (423)
T ss_pred hhhh-cCcccceEEEEcHHHH--------HhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHH
Confidence 9997 55 8999999887773 333211 1112234677887777777762111 22345555555
Q ss_pred HHHHHHHHhC-CCeee--CCCCceEEEEEcCCCC----hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHH
Q 013521 359 KIIVDAFQSL-GLKVN--GGKNAPYVWVQFPGSS----SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREY 429 (441)
Q Consensus 359 ~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~ 429 (441)
+.+.+.|+++ ..... ....|..+.+.+.... ...+...++ ++||.+.+. .+.+|++. ..++++
T Consensus 337 ~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~-~~Gv~v~~~-------~~~lR~~p~l~~t~ed 408 (423)
T PRK05964 337 AGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFAL-ERGVLLRPL-------GNTIYLMPPYIITAEE 408 (423)
T ss_pred HHHHHHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHH-HCCeEEEec-------CCEEEEeCCcccCHHH
Confidence 6666666544 22111 1124666667775322 334555555 459999873 14799984 579999
Q ss_pred HHHHHHHHHhhC
Q 013521 430 ISEACRRLKNFL 441 (441)
Q Consensus 430 ~~~~l~~l~~~l 441 (441)
+++++++|++++
T Consensus 409 Id~~v~~l~~al 420 (423)
T PRK05964 409 LDRITDAIVEVA 420 (423)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.8e-17 Score=138.79 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhH-hHHHHhccccccccccCcccee
Q 013521 117 MALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYI-DTSVIVGQAGKFLKETGKYRNI 194 (441)
Q Consensus 117 ~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~~~~~~~~~~v 194 (441)
.++++.+++++ +.+++++++++|+++++.+ +..+.++|++|+++.++|++.. ..+...| .++
T Consensus 3 ~~~~~~l~~~~----~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g------------~~~ 66 (170)
T cd01494 3 EELEEKLARLL----QPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAG------------AKP 66 (170)
T ss_pred HHHHHHHHHHc----CCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcC------------CEE
Confidence 57888999886 4678899999999999998 5667788999999999999988 6666666 578
Q ss_pred EEeecCCCCCccCC---C---CCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc
Q 013521 195 VYMNCRPENNFFPD---L---STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI 268 (441)
Q Consensus 195 ~~v~~~~~~~~~~~---~---~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~ 268 (441)
..++.+..+....+ + ...++++++++++|+||+|..++ .++|.++|+++|+++|+|++|..+......
T Consensus 67 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--- 140 (170)
T cd01494 67 VPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG--- 140 (170)
T ss_pred EEeccCCCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc---
Confidence 88887654333221 1 12468899999999999999998 588888999999999999999976654311
Q ss_pred cccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 269 YEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
.... ..+.++++.|++|.++ + .++|+++++
T Consensus 141 ~~~~-~~~~d~~~~s~~K~~~-~-~~~G~l~~~ 170 (170)
T cd01494 141 VLIP-EGGADVVTFSLHKNLG-G-EGGGVVIVK 170 (170)
T ss_pred cccc-cccCCEEEEEcccccC-C-CceEEEEeC
Confidence 1111 1234589999999997 3 789999863
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-15 Score=147.52 Aligned_cols=296 Identities=14% Similarity=0.097 Sum_probs=187.2
Q ss_pred cHHHHHHHHHHHhhhCCCCC-CcEEEcCCcH-HHHHHHHHhcC----CCCEEEEeCCCchhhHhHHHHhccccccccccC
Q 013521 116 NMALRTAIADKFYKDMGIEG-DEIFISDGAQ-SDISRLQMLLG----SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189 (441)
Q Consensus 116 ~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~-~al~~l~~l~~----~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~ 189 (441)
...+.+.+.+++.+.+|++. +..++++|+| .++.+.+..++ +||+|+++.-+|.+....+..+|
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G---------- 172 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAG---------- 172 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcC----------
Confidence 45555566665555457652 4588888888 46665433344 58999999999999999999999
Q ss_pred ccceeEEeecC-CCCCccCCCCC-----CC---CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 190 KYRNIVYMNCR-PENNFFPDLST-----TS---RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 190 ~~~~v~~v~~~-~~~~~~~~~~~-----~~---~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
++++.++.. +++.+..|.+. .+ +..++++++|+ |+.....+++++|.++|++||+++|+|++|+...
T Consensus 173 --~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~ 248 (444)
T TIGR03531 173 --FEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQS 248 (444)
T ss_pred --CeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcC
Confidence 588888852 23455555432 12 55666666665 5555566779999999999999999999999422
Q ss_pred cCCCCCccc--ccCCCcceeEEEecCCcccCCccceeEEEE-eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHH
Q 013521 261 TDPSPRSIY--EIPGAREVAIEISSFSKFAGFTGVRLGWTV-VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLA 337 (441)
Q Consensus 261 ~~~~~~~~~--~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 337 (441)
.. ...+. ... ...-.+++.|++|.+.+||. |+++ ++++.+ .+.+..... ....+.+.|.+...
T Consensus 249 ~~--~~~~~~~g~~-~Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el-------~~~i~~~y~--g~~~~s~~~~~~~~ 314 (444)
T TIGR03531 249 NK--YMELINKAIK-VGRVDAVVSSTDKNFMVPVG--GAIIYSFDENF-------IQEISKSYP--GRASASPSLDVLIT 314 (444)
T ss_pred hh--hhhhhhcccc-ccCCCeEEEeCccCCCCCCC--EEEEEECCHHH-------HHHHHHhcc--CCCCChHHHHHHHH
Confidence 11 11110 111 00114778899999987775 5544 644332 333333211 12244567776666
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCC-CceEEEEEcC---CCChHHHHHHHHHhcCe----EE
Q 013521 338 CLSPDGFQALRTVIDYYKENAKIIVDAFQSL----GLKVNGGK-NAPYVWVQFP---GSSSWDVFAEILEKTHI----LT 405 (441)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~-~~~~~~~~~~---~~~~~~~~~~ll~~~gi----~v 405 (441)
++. .+.+.++++.+++.++++++.+.|+++ |.++...+ +..-+-+.+. +.+...+-..|..+ +| .|
T Consensus 315 ll~-~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~~~~~~~g~~l~~~-~v~g~r~v 392 (444)
T TIGR03531 315 LLS-LGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLKGKDPTMLGSMLYSR-RVTGPRVV 392 (444)
T ss_pred HHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecccccccCHHHHHHHHHhC-CCCCceee
Confidence 665 556788999999999999999998865 66665432 3233444443 33444555555544 55 24
Q ss_pred eCCC-------Cc---CCCC----CCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 406 IPGS-------GF---GPGG----NEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 406 ~pg~-------~f---~~~~----~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.||. .| +... ..++-++ ++.+.+|++.++++|.+.+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 393 TNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred cCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 5666 33 2111 1244444 3558999999999998864
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-16 Score=150.76 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=116.3
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHH----hcccccccccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVI----VGQAGKFLKET 188 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~ 188 (441)
+-..++++.+|++. +.+ ..++|+++++|+++ +..++++||+|+++...|.+....+.. .|
T Consensus 64 p~~~~le~~lA~l~----g~~--~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~G--------- 128 (433)
T PRK08134 64 PTVAVLEERVAALE----GGV--GAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFG--------- 128 (433)
T ss_pred hHHHHHHHHHHHHh----CCC--cEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCC---------
Confidence 34688899999886 433 46889999999997 677789999999999999876554432 45
Q ss_pred CccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc
Q 013521 189 GKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI 268 (441)
Q Consensus 189 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~ 268 (441)
+++++++.++.+.+...+ .+++++|++.+|+||||.+.+ +++|+++|+++|+++|+|.++..... ..++
T Consensus 129 ---i~v~~vd~~d~~~l~~~i--~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~---~~pl 197 (433)
T PRK08134 129 ---IETTFVKPGDIDGWRAAI--RPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL---LRPF 197 (433)
T ss_pred ---eEEEEECCCCHHHHHHhc--CCCCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc---CCch
Confidence 578888764211111111 368999999999999999999 88999999999999999999873221 1222
Q ss_pred cccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 269 YEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
.+ +..+++.|.+|.++.+|-.+|.+++
T Consensus 198 -~~----GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 198 -EH----GADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred -hc----CCCEEEeccccccCCCCCceEEEEE
Confidence 22 2349999999999877777777665
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.7e-16 Score=140.79 Aligned_cols=336 Identities=15% Similarity=0.136 Sum_probs=226.2
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCC--CCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKG--YGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~--Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
+++--.+++++ .+.-.|.+.+|+.+.+.+.+...+..+ -+...-...|.+++|+. +.++..+++++=--..=
T Consensus 171 k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~L-----HqK~aALlFsSCfVAND 245 (570)
T KOG1360|consen 171 KKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADL-----HQKEAALLFSSCFVAND 245 (570)
T ss_pred CceEEEecCccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHH-----hcCcceeeeeeeeeccc
Confidence 34445556664 456789999999999998763222211 22344557788888887 34444555444333222
Q ss_pred HHHHHh--cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCC
Q 013521 149 SRLQML--LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPN 224 (441)
Q Consensus 149 ~~l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~ 224 (441)
..|+.| .-||.+|...+-.+.+....++..+. .-..+..++-+.+...++. ...+|+|-.-+.+
T Consensus 246 stLftLak~lpgcei~SD~gNHASMI~GIrns~v------------~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVh 313 (570)
T KOG1360|consen 246 STLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRV------------PKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVH 313 (570)
T ss_pred hHHHHHHHHCCCcEEeccccchHHHHHHhhhcCC------------cceeeccCCHHHHHHHHHhCCCCCCceEEEeeee
Confidence 234444 35899999999999999888888773 3333333321111111222 3568888888999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC-CcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
..+|.+-| +++|++++++||.+.+.||+|.--.|+.....+.+-++ .+...|+-|++.|.||+-| ||+.+...
T Consensus 314 SM~Gavcp---leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat~~ 387 (570)
T KOG1360|consen 314 SMDGAVCP---LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG---GYIAATRK 387 (570)
T ss_pred ccCCCcCC---HHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc---ceehhhhh
Confidence 99999999 89999999999999999999987666554444444333 2344589999999999888 99999888
Q ss_pred ccccCCchhHHHHHHHHhhhcCC--CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNG--ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 381 (441)
+ ++.++.+.....++ .+++....++.+.+-..-..-+.+|...+++.+++.+.|.+.|+.+.+. ...++
T Consensus 388 L--------vDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi~~-pSHIi 458 (570)
T KOG1360|consen 388 L--------VDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVIPN-PSHII 458 (570)
T ss_pred H--------HHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcccCC-Cccee
Confidence 8 46676665543333 3344444445444311111125667788888999999999999999864 56677
Q ss_pred EEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEe--ecCHHHHHHHHHHHHh
Q 013521 382 WVQFPG-SSSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSA--FGHREYISEACRRLKN 439 (441)
Q Consensus 382 ~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~--~~~~~~~~~~l~~l~~ 439 (441)
-+.+.+ ....+....|+.++||+|..-.+-. +.|...+||+= ..+++.++.+++.|..
T Consensus 459 Pv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~ 520 (570)
T KOG1360|consen 459 PVRVGDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLD 520 (570)
T ss_pred eeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHH
Confidence 777752 3445677889999999998755332 44677899983 4477888888777754
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-15 Score=146.80 Aligned_cols=221 Identities=14% Similarity=0.156 Sum_probs=139.9
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHH-hccccccccccCcc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVI-VGQAGKFLKETGKY 191 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~ 191 (441)
+-...|.+.+|++. +. +..++++++++|+.+ +..++++||+|++....|.+....+.. +...|
T Consensus 69 p~~~~Le~~lA~l~----g~--~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~G--------- 133 (436)
T PRK07812 69 PTQDVVEQRIAALE----GG--VAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLG--------- 133 (436)
T ss_pred chHHHHHHHHHHHh----CC--CeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCe---------
Confidence 34568888888875 43 345666677778886 788899999999999999876554432 11111
Q ss_pred ceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc
Q 013521 192 RNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY 269 (441)
Q Consensus 192 ~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~ 269 (441)
++++.++ +.. + ..++++ .+++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|+++..... ..++
T Consensus 134 i~v~~vd-d~~-d-~e~l~~ai~~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~---~~pl- 203 (436)
T PRK07812 134 IEVSFVE-DPD-D-LDAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL---IRPL- 203 (436)
T ss_pred EEEEEEC-CCC-C-HHHHHHhCCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc---CCch-
Confidence 4666664 221 1 111221 368899999999999999999 88999999999999999998863111 1122
Q ss_pred ccCCCcceeEEEecCCcccCCccceeEEEEeeccccc---cC-------Cc-------------hh-HHHHHHHHhhhcC
Q 013521 270 EIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY---SN-------GY-------------PV-IKDFNRIVCTCFN 325 (441)
Q Consensus 270 ~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~---~~-------~~-------------~~-~~~~~~~~~~~~~ 325 (441)
.. +..+++.|++|.+|..|--+|.+++...... .. .+ .. .+...........
T Consensus 204 ~~----GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 279 (436)
T PRK07812 204 EH----GADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGS 279 (436)
T ss_pred hc----CCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCC
Confidence 11 2348889999999877666777776432110 00 00 00 0111111222233
Q ss_pred CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 326 GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 326 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
..+++.. .-++ .+.+-+..+.++..++...+.+.|+++
T Consensus 280 ~l~p~~a---~l~~--rgl~tL~~R~~~~~~nA~~la~~L~~~ 317 (436)
T PRK07812 280 AISPFNA---FLIA--QGLETLSLRIERHVANAQRVAEFLEAR 317 (436)
T ss_pred CCCHHHH---HHHh--cCcCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444432 1222 345556777888889999999999987
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-15 Score=149.13 Aligned_cols=341 Identities=11% Similarity=0.048 Sum_probs=197.2
Q ss_pred CCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC--CCc-EEEcCC
Q 013521 70 PDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE--GDE-IFISDG 143 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~-I~~t~G 143 (441)
.++.++|+..|.. .+ ..+|.+.+++.+.+..... ....+.+ .+.+..+|+.|....+-. ... ++++++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~--~~~~~~~----~~~~~~lae~L~~~~p~~~~~~~~~f~~~s 110 (442)
T TIGR00709 37 EGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLP--LHTLDLT----TPLKDAFIEALLNIIPKRKMDYKLQFPGPS 110 (442)
T ss_pred CCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccC--ccccccC----cHHHHHHHHHHHHhCCCcCCCccEEEeCCC
Confidence 3567888876642 22 3678999999998875210 1111112 244555566554322211 134 455678
Q ss_pred cHHHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHhcc-c---cccccccCccceeEEeecCCCCCc-----------
Q 013521 144 AQSDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIVGQ-A---GKFLKETGKYRNIVYMNCRPENNF----------- 205 (441)
Q Consensus 144 ~~~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~-~---~~~~~~~~~~~~v~~v~~~~~~~~----------- 205 (441)
+++|... + .........|+....+|++....+..... . ..+.+.. ..+..++.......
T Consensus 111 GsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (442)
T TIGR00709 111 GADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLM---PGVQFMPYPHEYRCPFGIGGEAGSN 187 (442)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCC---CCcEEeCCCccccccccCCchhHHH
Confidence 8888875 3 22233446799999999997655544321 0 0000000 12223332111000
Q ss_pred ---------cCCCCC-CCCccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCC
Q 013521 206 ---------FPDLST-TSRTDIIFFCSP-NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGA 274 (441)
Q Consensus 206 ---------~~~~~~-~~~~~~v~i~~p-~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~ 274 (441)
..+++. ..++.++++... +|+.....|++.+++|.++|++||+++|.||++..|...+.......+.-.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~ 267 (442)
T TIGR00709 188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIE 267 (442)
T ss_pred HHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCC
Confidence 000011 135666666533 455445689999999999999999999999999988665543333333323
Q ss_pred cceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013521 275 REVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYY 354 (441)
Q Consensus 275 ~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 354 (441)
|| +++ +||.++ .|+++|+++++++. . .+.......+.+.+++++.++.+.|+.-.. +.+.+..
T Consensus 268 PD--iv~--~gK~l~-~G~Pigav~~~~~~-~--------~~~~~~~~~T~~gnpla~aaa~a~L~~i~~---~~l~~~~ 330 (442)
T TIGR00709 268 PD--FVV--MSKAVG-GGLPLAVLLIAPEF-D--------AWQPAGHTGTFRGNQLAMVTGTEALNYWKD---DNLAQNA 330 (442)
T ss_pred Cc--EEE--Eccccc-CCcccEEEEEchHH-h--------ccCCCcCCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHH
Confidence 45 333 899998 69999999998763 1 111111224455789999999998862111 3445566
Q ss_pred HHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCCCC---------------hHHHHHHHHHhcCeEEeCCCCcCCCC
Q 013521 355 KENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGSS---------------SWDVFAEILEKTHILTIPGSGFGPGG 415 (441)
Q Consensus 355 ~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ll~~~gi~v~pg~~f~~~~ 415 (441)
+++.+++.+.|+++ ++....-.-|.++-+++.... ...+...++ ++||.+.+... .
T Consensus 331 ~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~~----~ 405 (442)
T TIGR00709 331 QERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACF-ENGLLLETGGR----E 405 (442)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHH-HCCeEEeecCC----C
Confidence 66777777777653 221111124666666663110 122334444 56999976421 2
Q ss_pred CCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 416 NEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 416 ~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+.||+. +..+++++++++++|.+++
T Consensus 406 ~~~l~~~Ppl~it~~ei~~~~~~l~~~l 433 (442)
T TIGR00709 406 GEVFRLLCPITIDQEECEEGISRFKQAV 433 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4678887 4568999999999998764
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-15 Score=145.21 Aligned_cols=192 Identities=17% Similarity=0.176 Sum_probs=129.6
Q ss_pred eEEeCCCCCCCCCc-----HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 74 LIRLGIGDTTQPIP-----DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 74 ~i~l~~g~~~~~~~-----~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
+..|+.|.++.|.. +...+++.+.+. .....+++ -..++++++|+++ +. +++++++|+++++
T Consensus 25 ~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~-----~~~~~~G~--~~~~fe~~lA~~~----g~--~~~v~~~sGt~al 91 (438)
T PRK15407 25 PKPFVPGKSPIPPSGKVIDAKELQNLVDASL-----DFWLTTGR--FNDAFEKKLAEFL----GV--RYALLVNSGSSAN 91 (438)
T ss_pred cccccCCCCCCCcCccCCCHHHHHHHHHHHH-----hCcccCCh--hHHHHHHHHHHHh----CC--CeEEEECCHHHHH
Confidence 34578888765532 333344444443 22222322 3578999999997 43 4788999888888
Q ss_pred HH-HHHh---------cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC
Q 013521 149 SR-LQML---------LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS 213 (441)
Q Consensus 149 ~~-l~~l---------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~ 213 (441)
.+ +..+ ++|||+|+++.|+|+.+...+...| .+++.++++.+ .+..|++. .+
T Consensus 92 ~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G------------~~pv~vdvd~~-~~~id~~~le~~i~~ 158 (438)
T PRK15407 92 LLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNG------------LVPVFVDVELP-TYNIDASLLEAAVSP 158 (438)
T ss_pred HHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcC------------CEEEEEecCCC-cCCcCHHHHHHHcCc
Confidence 76 5443 4899999999999999998888888 58888888653 33334321 46
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecC--CcccCCc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSF--SKFAGFT 291 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~ 291 (441)
++++|+++++ +|... ++++|.++|++||++||+|++++...... ...+..+. + +.+.|| +|.+. .
T Consensus 159 ~tkaVi~~~~---~G~p~---dl~~I~~la~~~gi~vIeDaa~a~G~~~~-g~~~G~~g---d--~~~fSf~~~k~~~-~ 225 (438)
T PRK15407 159 KTKAIMIAHT---LGNPF---DLAAVKAFCDKHNLWLIEDNCDALGSTYD-GRMTGTFG---D--IATLSFYPAHHIT-M 225 (438)
T ss_pred CCeEEEEeCC---CCChh---hHHHHHHHHHHCCCEEEEECccchhhhcC-CeeeeccC---c--eEEEeCCCCCCcc-c
Confidence 8899998764 44433 48999999999999999999998533211 12232331 2 556666 46665 4
Q ss_pred cceeEEEEeecccc
Q 013521 292 GVRLGWTVVPEELR 305 (441)
Q Consensus 292 G~r~G~l~~~~~~~ 305 (441)
|- -|+++++++.+
T Consensus 226 ge-GG~l~t~d~~l 238 (438)
T PRK15407 226 GE-GGAVFTNDPLL 238 (438)
T ss_pred cC-ceEEEECCHHH
Confidence 43 49999988775
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.3e-15 Score=145.48 Aligned_cols=341 Identities=12% Similarity=0.093 Sum_probs=199.8
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|- ..+ ..+|.+.+++.+.+.+.... ....|. .+.+..+|+.+.+..+-..+.+++++++++
T Consensus 50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~-~~~~~~-----~~~~~~la~~l~~~~p~~~~~v~f~~sGse 123 (460)
T PRK06541 50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFF-PLWSYA-----HPPAIELAERLAALAPGDLNRVFFTTGGSE 123 (460)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCc-cccccC-----CHHHHHHHHHHHHhCCCCcCEEEEcCCcHH
Confidence 456788887663 222 36789999999998764210 111221 233444555554322333469999999999
Q ss_pred HHHH-HH--Hhc----C--CCCEEEEeCCCchhhHhHHHHhccccc----cccccCccceeEEeecCCCCC---ccC---
Q 013521 147 DISR-LQ--MLL----G--SNVTVAVQDPSFPAYIDTSVIVGQAGK----FLKETGKYRNIVYMNCRPENN---FFP--- 207 (441)
Q Consensus 147 al~~-l~--~l~----~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~----~~~~~~~~~~v~~v~~~~~~~---~~~--- 207 (441)
|+.. +. ... + ...+|+...-+|++....+........ +.+.. ..+..+|...... +..
T Consensus 124 Ave~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~ 200 (460)
T PRK06541 124 AVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLV---PGGFRVPNTNFYRAPELGDDPE 200 (460)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCC---CCcEEeCCCccccccccCCCHH
Confidence 9885 42 222 1 246889999999987544433221100 00000 1222232211000 000
Q ss_pred --------CCCC-----CCCccEEEEcCC-CCccccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccC
Q 013521 208 --------DLST-----TSRTDIIFFCSP-NNPTGHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIP 272 (441)
Q Consensus 208 --------~~~~-----~~~~~~v~i~~p-~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~ 272 (441)
.++. .++..+.++..| +++.|.+.+ .+.+++|.++|++||+++|.||++..|...+.......+.
T Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~g 280 (460)
T PRK06541 201 AFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFG 280 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcC
Confidence 1111 123345566688 999998764 9999999999999999999999997664322211121222
Q ss_pred CCcceeEEEecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHHH----HhhhcCCCcHHHHHHHHHhcCCCcHHHH
Q 013521 273 GAREVAIEISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNRI----VCTCFNGASNIVQAGGLACLSPDGFQAL 347 (441)
Q Consensus 273 ~~~~~~i~i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 347 (441)
-.+| ++ +|||.++ .|+ ++|+++++++++ +.+... ......+.++++..++.+.++.-. -
T Consensus 281 v~PD--iv--t~gK~l~-~G~~pigav~~~~~i~--------~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~---~ 344 (460)
T PRK06541 281 YVPD--II--TCAKGIT-SGYSPLGAMIASDRLF--------EPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFE---R 344 (460)
T ss_pred CCCC--EE--Eeccccc-CCccceeEEEEcHHHH--------HHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHH---h
Confidence 1244 32 5999998 887 999999998874 333211 111234467777777777775211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-C--C-eeeCCCCceEEEEEcCCC-------Ch--------HHHHHHHHHhcCeEEeCC
Q 013521 348 RTVIDYYKENAKIIVDAFQSL-G--L-KVNGGKNAPYVWVQFPGS-------SS--------WDVFAEILEKTHILTIPG 408 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~-g--~-~~~~~~~~~~~~~~~~~~-------~~--------~~~~~~ll~~~gi~v~pg 408 (441)
+...++.+++.+++.+.|+++ . + .... ..|.++-+++... .. ..+...++ ++||.+.+.
T Consensus 345 ~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vr-g~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~ 422 (460)
T PRK06541 345 EGLLDHVRDNEPAFRATLEKLLDLPIVGDVR-GDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALF-EAGLYCRAD 422 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEE-ecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHH-hCCeEEEec
Confidence 345677778888888888765 2 2 1122 2466666665310 00 12334555 459999873
Q ss_pred CCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 409 SGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 409 ~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
+.+.+.+||+- ..+++++++++++|.+++
T Consensus 423 ----~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l 453 (460)
T PRK06541 423 ----DRGDPVVQLAPPLISGQEEFDEIEQILRSVL 453 (460)
T ss_pred ----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 12346899995 468999999999998764
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-15 Score=144.99 Aligned_cols=211 Identities=11% Similarity=0.143 Sum_probs=144.6
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH----Hhcccccccccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAGKFLKET 188 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~~ 188 (441)
+-...|.+.+|+.- ..+..++++++++|++. +..++++||+|++....|.+....+. ..|
T Consensus 62 Pt~~~le~~la~LE------g~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~G--------- 126 (395)
T PRK08114 62 LTHFSLQEAMCELE------GGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLG--------- 126 (395)
T ss_pred hhHHHHHHHHHHHh------CCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcC---------
Confidence 34566777777642 24677888889999997 77889999999999999988776653 334
Q ss_pred CccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc--CcEEEEcccccccccCCCCC
Q 013521 189 GKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKAN--GSIIVYDSAYAAYITDPSPR 266 (441)
Q Consensus 189 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~--~~~ii~De~~~~~~~~~~~~ 266 (441)
+++..++..+...+...+ .+++++|++.+|.||||.+.+ +++|+++|+++ |+++++|.+++.-.. -.|
T Consensus 127 ---i~v~~vd~~d~~~l~~~l--~~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~p- 196 (395)
T PRK08114 127 ---VTTTWFDPLIGADIAKLI--QPNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKA- 196 (395)
T ss_pred ---cEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccc-cCH-
Confidence 477777643221221111 357899999999999999999 99999999998 499999999974111 001
Q ss_pred cccccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 267 SIYEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 267 ~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
.. .+..+++.|.+|.++-++ .-.|.++.+++. .+.+...........++... ++...+.+
T Consensus 197 --l~----~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~--------~~~l~~~~~~~G~~~~p~~a-----~l~~rgl~ 257 (395)
T PRK08114 197 --LD----FGIDISIQAGTKYLVGHSDAMIGTAVANARC--------WEQLRENSYLMGQMVDADTA-----YMTSRGLR 257 (395)
T ss_pred --HH----cCCcEEEEcCcccccCCCcceeEEEEcCHHH--------HHHHHHHHHhccCCCCHHHH-----HHHHcCCC
Confidence 11 233599999999776443 577877666544 23344333333334444442 22224455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
.+.-+.++..++...+.+.|+++
T Consensus 258 TL~lR~~~~~~na~~va~~L~~h 280 (395)
T PRK08114 258 TLGVRLRQHEESSLKVAEWLAEH 280 (395)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC
Confidence 56777888899999999999987
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-15 Score=144.22 Aligned_cols=333 Identities=13% Similarity=0.074 Sum_probs=193.8
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|. ..+ ..+|.+.+++.+.+.+... .+ .....+....+|+++.+.. ..+.+++++++++|
T Consensus 35 G~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~-----~~--~~~~~~~~~~la~~l~~~~--~~~~v~f~~SGseA 105 (395)
T PRK03715 35 GKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLIN-----PS--PAFYNEPMAKLAGLLTQHS--CFDKVFFANSGAEA 105 (395)
T ss_pred CCEEEECCcChhhccCCCCCHHHHHHHHHHHHhccc-----cc--ccccCHHHHHHHHHHhhcc--CCCEEEEeCCcHHH
Confidence 46788887653 112 2478899999998865321 11 1123456778888875422 24689999999999
Q ss_pred HHH-HHHhc------CCC-CEEEEeCCCchhhHhHHHH-hccccccccccCccceeEEeecCCCCCccCCCCC--CCCcc
Q 013521 148 ISR-LQMLL------GSN-VTVAVQDPSFPAYIDTSVI-VGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTD 216 (441)
Q Consensus 148 l~~-l~~l~------~~g-d~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~ 216 (441)
... +.... ++| ..|+..+.+|++....... .+..............+...+.. + ..+++. .+++.
T Consensus 106 ~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~---d-~~~l~~~l~~~~a 181 (395)
T PRK03715 106 NEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELN---D-IASVEKLITDKTV 181 (395)
T ss_pred HHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCc---h-HHHHHHHcCCCce
Confidence 886 42221 123 5788888889886433332 23111000000000011111111 1 011111 13566
Q ss_pred EEEEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 217 IIFFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+|++...++..|... |.+.+++|.++|++||+++|.||++..|...+.......+.-.+| +.+++|.+| .|+.+
T Consensus 182 avi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PD----i~t~gK~lg-~G~p~ 256 (395)
T PRK03715 182 AVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPD----IMTLGKGIG-GGVPL 256 (395)
T ss_pred EEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCc----eeeehhhhh-CCcce
Confidence 655543366667664 689999999999999999999999997543332111112221244 357899998 78999
Q ss_pred EEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC----CCe
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL----GLK 371 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~ 371 (441)
|.+++++++. .+.......+.+.++++..++.+.++.-.. +++.++.+++.+++.+.|+++ ++.
T Consensus 257 ~av~~~~~i~---------~~~~~~~~~T~~g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~i~ 324 (395)
T PRK03715 257 AALLAKAEVA---------VFEAGDQGGTYNGNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELSEERGLE 324 (395)
T ss_pred EEEEEccccc---------cccCCCcCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhhcCCcC
Confidence 9999888762 111111122334567777777777752111 345566666667777766643 443
Q ss_pred eeCCCCceEEEEEcCCCChHHHHHHHHHhc---CeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 372 VNGGKNAPYVWVQFPGSSSWDVFAEILEKT---HILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
... ..|..+-+.+....... +...+.+. ||.+.+. ..+.+||+. ..+++++++++++|.+++
T Consensus 325 ~vr-G~Glm~~i~l~~~~~~~-~~~~~~~~~~~Gi~~~~~------~~~~lR~~p~l~~t~~ei~~~~~~l~~~l 391 (395)
T PRK03715 325 GER-GEGLLRALLLGKDIGPQ-IVEKARDMQPDGLLLNAP------RPNLLRFMPALNVTTEEIDQMIAMLRSVL 391 (395)
T ss_pred eEE-cceeEEEEEecCchHHH-HHHHHHhccCCCEEEeec------CCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 222 24677777775321222 23333344 9998653 235799995 558999999999998763
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-15 Score=132.57 Aligned_cols=321 Identities=17% Similarity=0.181 Sum_probs=202.0
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQM 153 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~ 153 (441)
.+||-+..... |..+..++|.++.-. ... |+.+.....|.+.+|+.. | +..-+++++|++..+-.++.
T Consensus 23 ~vDLRSDTvT~-PTdeMr~am~eA~vg----DdV--yGeD~tt~rLE~~vA~l~----G-KEAgLFv~SGTmgNllaIm~ 90 (384)
T KOG1368|consen 23 SVDLRSDTVTV-PTDEMRRAMAEASVG----DDV--YGEDPTTNRLEQRVAELF----G-KEAGLFVPSGTMGNLLAIMV 90 (384)
T ss_pred ccccccccccC-ChHHHHHHHhhcccC----ccc--ccCCccHHHHHHHHHHHh----C-ccceeeecccccccHHHHHH
Confidence 46666555433 346667777775432 334 556677889999999985 4 45578899999988776655
Q ss_pred h-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccC-CCCC----------CCCccEEEEc
Q 013521 154 L-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFP-DLST----------TSRTDIIFFC 221 (441)
Q Consensus 154 l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~----------~~~~~~v~i~ 221 (441)
. -.+|.+|++.+.+|--..+.....-..| +.+..+...+++-+.+ +++. .+.+++|.+-
T Consensus 91 Hc~~rg~eii~gd~~HI~~~E~gg~s~l~g---------v~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclE 161 (384)
T KOG1368|consen 91 HCHQRGSEIIVGDRAHIHRYEQGGISQLAG---------VHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLE 161 (384)
T ss_pred HhcCCCceEEeccchheeehhccChhhhcc---------ceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEee
Confidence 4 4799999998877733222211111101 3455555443332221 1221 2568999998
Q ss_pred CCCCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE-E
Q 013521 222 SPNNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT-V 299 (441)
Q Consensus 222 ~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l-~ 299 (441)
|-||-+| .++|.+++.+|.+||++||+.+..|.+--+........++..+....|-+- -.|||.+|.| +|-+ +
T Consensus 162 NT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVs--iCLSKglgAP---VGSViV 236 (384)
T KOG1368|consen 162 NTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVS--ICLSKGLGAP---VGSVIV 236 (384)
T ss_pred ccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhh--hhhhccCCCC---cccEEE
Confidence 8877676 999999999999999999999999998664333333445554433334322 2489999855 6754 5
Q ss_pred eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCC-C
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS-PDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGG-K 376 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~ 376 (441)
+|.+++ +....++.....+.-.....+++++.. ++.+ ...+.-.++...+.+.++.. ++++..+ -
T Consensus 237 G~k~FI--------~kA~~~RKalGGGmRQsGvLaaaaLval~~~~----~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~ 304 (384)
T KOG1368|consen 237 GSKDFI--------DKARHFRKALGGGMRQSGVLAAAALVALDENV----PLLRADHKRAKELAEYINTPEEIRVEVPAV 304 (384)
T ss_pred ccHHHH--------HHHHHHHHHhcCchhHHHHHHHHHHHHhhcch----HHHHHHHHHHHHHHHHhccccceeeecchh
Confidence 677774 444444444444433333333333332 1222 23445556677777777776 3776544 4
Q ss_pred CceEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHh
Q 013521 377 NAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKN 439 (441)
Q Consensus 377 ~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~ 439 (441)
..+++.+.+. +.+.+++...+ ++.||.+.+|..+ .+|+.+. .++++++..+..+.+
T Consensus 305 etNiv~~~l~q~~~~~~~l~~~~-~k~gi~lm~~~s~------r~Rivlh~Qvt~~~ve~~~~~~~k 364 (384)
T KOG1368|consen 305 ETNIVNMVLCQARLTAEELCKFL-EKNGILLMGGASR------RIRIVLHHQVTDEDVEYVKSVLSK 364 (384)
T ss_pred hcceeeeecccccCCHHHHHHHH-HHCCeEEeecccc------ceEEEEEEecCHHHHHHHHHHHHH
Confidence 6778777764 55666676665 5569999987643 4899984 388999999888843
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-15 Score=144.36 Aligned_cols=339 Identities=13% Similarity=0.093 Sum_probs=197.6
Q ss_pred CCCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..| ...+ ..+|.+.+++.+.+.+.. ....|... +.+..+|+.|....+-..+.+++++++++
T Consensus 73 dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~---~~~~~~~~----~~~~~lAe~L~~~~p~~~~~v~f~~SGsE 145 (442)
T TIGR03372 73 QGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQP---LHSQELLD----PLRALLAKTLAALTPGKLKYSFFCNSGTE 145 (442)
T ss_pred CCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCC---CcccccCC----HHHHHHHHHHHHhCCCCcCEEEEeCCchH
Confidence 35678888766 3333 367899999999887643 22223223 33444555543322323367999999999
Q ss_pred HHHH-H--HHhc---CCCCEEEEeCCCchhhHhHHHHhccccc----cccccCccceeEEeecCCCCCccCCCC----CC
Q 013521 147 DISR-L--QMLL---GSNVTVAVQDPSFPAYIDTSVIVGQAGK----FLKETGKYRNIVYMNCRPENNFFPDLS----TT 212 (441)
Q Consensus 147 al~~-l--~~l~---~~gd~Vlv~~p~y~~~~~~~~~~g~~~~----~~~~~~~~~~v~~v~~~~~~~~~~~~~----~~ 212 (441)
|... + .... .....|+....+|++....+.....+.. +.+.. ..+..+|..+.......++ ..
T Consensus 146 A~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~---~~~~~~p~~d~~~~~~~l~~~~~~~ 222 (442)
T TIGR03372 146 SVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLL---PGFHHVAFGDIEAMLKALNECKKTG 222 (442)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCC---CCCEEeCCCCHHHHHHHHHHHhcCC
Confidence 9886 3 2222 1346799999999997544443321110 00000 1233444322111111111 11
Q ss_pred CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
.++.++++ .| +.--|... |++.++++.++|++||+++|.||++..|...+.......+.-.|| | -+++|.+|
T Consensus 223 ~~vAavIv-Epv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PD--i--vt~gK~lg- 296 (442)
T TIGR03372 223 DDVAAIIL-EPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPD--I--LCLAKALG- 296 (442)
T ss_pred CcEEEEEE-eCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCC--e--eeehhhhc-
Confidence 34555554 55 55567654 788999999999999999999999976543332212222222344 2 34999998
Q ss_pred cc-ceeEEEEeeccccccCCchhHHHHHH--HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 013521 291 TG-VRLGWTVVPEELRYSNGYPVIKDFNR--IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 291 ~G-~r~G~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 367 (441)
.| +.+|.+++++++. +.+.. .....+++.++++..++.+.|+.-.. +.+.++.++.-+++.+.|++
T Consensus 297 ~G~~Pigavv~~~~i~--------~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~---~~l~~~~~~~G~~l~~~L~~ 365 (442)
T TIGR03372 297 GGVMPIGATIATEAVF--------SVLFDNPFLHTTTFGGNPLACAAALATINELLE---KNLPAQAAIKGDFLLDGFQQ 365 (442)
T ss_pred CCcccceEEEecHHHH--------HhhhccCccccCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH
Confidence 78 6899999887763 33321 11223444578888888887762111 22334445555555555554
Q ss_pred C----C-C-eeeCCCCceEEEEEcCCCC-hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHH
Q 013521 368 L----G-L-KVNGGKNAPYVWVQFPGSS-SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLK 438 (441)
Q Consensus 368 ~----g-~-~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~ 438 (441)
+ + . .-.. ..|.++-+.+.... ...+...+++ +||.+.+... +.+.+||.. ..+++++++++++|.
T Consensus 366 l~~~~~~~i~~vR-G~Gl~~giel~~~~~~~~i~~~l~~-~Gvl~~~~~~----~~~~lr~~Ppl~~t~~~id~~~~~l~ 439 (442)
T TIGR03372 366 LAAEYPDLIIEAR-GKGLLMAIEFRDNEIGYAFAKELFQ-QNILVAGTLN----NAKSIRIEPPLTITIEQCALVIKAAK 439 (442)
T ss_pred HHHhCCCceEEEe-cceEEEEEEeCChHHHHHHHHHHHH-CCcEEeecCC----CCCEEEEECCcccCHHHHHHHHHHHH
Confidence 3 2 1 1112 35778888885322 2345566555 5999975321 236899884 569999999999999
Q ss_pred hhC
Q 013521 439 NFL 441 (441)
Q Consensus 439 ~~l 441 (441)
+++
T Consensus 440 ~~~ 442 (442)
T TIGR03372 440 DAL 442 (442)
T ss_pred HhC
Confidence 875
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.9e-15 Score=144.92 Aligned_cols=349 Identities=12% Similarity=0.089 Sum_probs=194.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHH-hhccCCCCCCCCCC-CcCcHHHHHHHHHH-HhhhCCCCCCcEEE----cCCcH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHA-FALSTVKGYKGYGA-EQGNMALRTAIADK-FYKDMGIEGDEIFI----SDGAQ 145 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~-~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~-l~~~~~~~~~~I~~----t~G~~ 145 (441)
..|+|=-+++ ..++.+.+++...+ .++.......+|.. ..-..++ |.++.. ..+.++...+.+.+ .+|++
T Consensus 35 ~~l~liasen--~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~l-E~~~~~~~~~~f~~~~~~~~~nv~~~SG~~ 111 (475)
T PLN03226 35 KGLELIASEN--FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQI-ETLCQKRALEAFRLDPEKWGVNVQPLSGSP 111 (475)
T ss_pred cCeeEecCCc--cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHH-HHHHHHHHHHHhCCCcceeEEecCcCchHH
Confidence 3577766654 35688999999988 55543222223322 2222333 333332 22356777666655 77777
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCchhhHh-HHHHhccccccccccCccceeEEeecCCCCCccCCCC---C---CCCccEE
Q 013521 146 SDISRLQMLLGSNVTVAVQDPSFPAYID-TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T---TSRTDII 218 (441)
Q Consensus 146 ~al~~l~~l~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~---~~~~~~v 218 (441)
..+.++.++++|||.|+..+....++.. .....|.+... ...+.++..+.++.+++ ..|++ + ..++++|
T Consensus 112 AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~---~~~~~~~~~y~~~~~~g-~iD~d~Le~~l~~~~pklI 187 (475)
T PLN03226 112 ANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISA---TSIYFESMPYRLDESTG-LIDYDKLEKKAMLFRPKLI 187 (475)
T ss_pred HHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhccccccc---ceEEEEeeeeeecCCCC-CcCHHHHHHHHhhcCCeEE
Confidence 7777789999999999985532222211 11111111000 00001333444443322 23322 1 2467766
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
++ ..++ +|...+ +++|.++|+++|+++++|++|.--..... +.+ ++ ...++++|++|+++ |.+-|
T Consensus 188 v~-~~S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p---~~---~~Div~~t~hK~L~--GP~Gg 254 (475)
T PLN03226 188 IA-GASA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASP---FE---YCDVVTTTTHKSLR--GPRGG 254 (475)
T ss_pred EE-ecCc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCC---CC---CCeEEEecCccccc--CCCce
Confidence 54 3344 677777 77888999999999999999985333211 211 11 23488999999982 34448
Q ss_pred EEEeeccccccCC------chhHHHHHHHHhhhcCCCcHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 297 WTVVPEELRYSNG------YPVIKDFNRIVCTCFNGASNIVQAGG-LACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 297 ~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
+++++++...... ....+.+.......+.+.+.+.+.++ .++++.-.....+..+++..++.+.+.+.|.+.|
T Consensus 255 ~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G 334 (475)
T PLN03226 255 MIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKG 334 (475)
T ss_pred EEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9888775431100 00011111111111222233333333 2233311111236678899999999999999999
Q ss_pred CeeeCC-CCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcC---CCCCCeEEEEe------ecCHHHHHHHHHHHH
Q 013521 370 LKVNGG-KNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFG---PGGNEHIRVSA------FGHREYISEACRRLK 438 (441)
Q Consensus 370 ~~~~~~-~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~~~iRls~------~~~~~~~~~~l~~l~ 438 (441)
+.+..+ .....+++++. .......+...|++.||.+..+...+ +-.++.||++. +.++++++++.+.|.
T Consensus 335 ~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~ 414 (475)
T PLN03226 335 YKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLH 414 (475)
T ss_pred CEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHH
Confidence 988653 23567888884 22233445666777899998764221 22356799962 336788999888887
Q ss_pred hhC
Q 013521 439 NFL 441 (441)
Q Consensus 439 ~~l 441 (441)
+++
T Consensus 415 ~~~ 417 (475)
T PLN03226 415 RAV 417 (475)
T ss_pred HHH
Confidence 653
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-14 Score=140.17 Aligned_cols=239 Identities=14% Similarity=0.150 Sum_probs=152.1
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhH----hHHHHhccccccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYI----DTSVIVGQAGKFLKE 187 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~ 187 (441)
.+-..+|.+.+|++. + .+..++++++++|+.+ +..++++||+|+++.+.|.+.. ..+...|
T Consensus 63 ~P~~~~lE~~la~le----g--~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~G-------- 128 (384)
T PRK06434 63 NPTVQAFEEKYAVLE----N--AEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLG-------- 128 (384)
T ss_pred ChhHHHHHHHHHHHh----C--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcC--------
Confidence 345577788888875 3 3466777777799987 7788999999999888766654 3444455
Q ss_pred cCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCc
Q 013521 188 TGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS 267 (441)
Q Consensus 188 ~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~ 267 (441)
+++++++.++.+.+..+ ..++++|++.+|.|||+.+.+ +++|+++|++++ +++|.++..- +. ..+
T Consensus 129 ----i~v~fvd~~~~~~~~l~---~~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~-~~--~~p 193 (384)
T PRK06434 129 ----IHVDYIDTDRLNSLDFD---PSNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASP-YN--QNP 193 (384)
T ss_pred ----cEEEEECCCChhheeec---CCCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCc-cc--CCc
Confidence 58888888653344322 146899999999999999877 889999999998 4569997521 11 112
Q ss_pred ccccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHH
Q 013521 268 IYEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA 346 (441)
Q Consensus 268 ~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 346 (441)
+. . +-.+++.|.+|.++.+| .=.|.++++++.+ .+++...........+++.. ++ .+ .+.+.
T Consensus 194 l~-~----gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~-------~~~~~~~~~~~G~~~~~~~A--~l-~~--~gL~t 256 (384)
T PRK06434 194 LD-L----GADVVIHSATKYISGHSDVVMGVAGTNNKSI-------FNNLVERRKTLGSNPDPIQA--YL-AL--RGLKT 256 (384)
T ss_pred hh-c----CCCEEEeecccccCCCCCceEEEEecCcHHH-------HHHHHHHHHhcCCCCCHHHH--HH-HH--hCCCc
Confidence 21 1 22489999999997433 3357777755432 33443333222333343322 11 11 33445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCe-eeCC----------CCceEEEEEcCCCChHHHHHHHHHh
Q 013521 347 LRTVIDYYKENAKIIVDAFQSL-GLK-VNGG----------KNAPYVWVQFPGSSSWDVFAEILEK 400 (441)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~ll~~ 400 (441)
+..+.++.+++...+.+.|+.+ .++ +.-| ..|..+.+++++ .+.+.++++.
T Consensus 257 L~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~---~~~~~~f~~~ 319 (384)
T PRK06434 257 LGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRS---MEDVHKFIRN 319 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECC---HHHHHHHHHh
Confidence 6777888888999999999987 332 2211 135567788863 3334455544
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-14 Score=140.06 Aligned_cols=291 Identities=15% Similarity=0.113 Sum_probs=186.5
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCcE--EEcCCcHHHHHH-HHHh--cCCCCEEEEeCCCchhhHhHHHHhccccccccccC
Q 013521 115 GNMALRTAIADKFYKDMGIEGDEI--FISDGAQSDISR-LQML--LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~~I--~~t~G~~~al~~-l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~ 189 (441)
...++.+.+.+++.+.++.+++++ ++|+|+|++... +... ..+++.|++++-.|+++...++.+|
T Consensus 62 ~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg---------- 131 (380)
T PRK02769 62 NSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLR---------- 131 (380)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcC----------
Confidence 345566666666666568877665 899999999654 3222 3578899999999999999999888
Q ss_pred ccceeEEeecCCCCCccCC-CCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC---cEEEEcccccccc
Q 013521 190 KYRNIVYMNCRPENNFFPD-LST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANG---SIIVYDSAYAAYI 260 (441)
Q Consensus 190 ~~~~v~~v~~~~~~~~~~~-~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~---~~ii~De~~~~~~ 260 (441)
.+...++.++++..+.+ +++ ..++.+|+++.++|+||.+-| +++|+++|++|| +++++|.+++.+.
T Consensus 132 --~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~ 206 (380)
T PRK02769 132 --IKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMI 206 (380)
T ss_pred --CCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEeccccee
Confidence 35566676654333222 111 124888888899999999999 888889999998 6999999998643
Q ss_pred cCC-CCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhc
Q 013521 261 TDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL 339 (441)
Q Consensus 261 ~~~-~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 339 (441)
..- ......++. .+.+.+..|.+|.++ ....+|.++.+++.+..-... ...+.........+-+.....+.-+.+
T Consensus 207 ~p~~~~~~~~d~~--~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~~~~~~-~~yl~~~d~t~~GSR~g~~~l~lw~aL 282 (380)
T PRK02769 207 LPFVNNPPPFSFA--DGIDSIAISGHKFIG-SPMPCGIVLAKKKYVERISVD-VDYIGSRDQTISGSRNGHTALLLWAAI 282 (380)
T ss_pred ecccCccccCCcc--CCCCEEEECCcccCC-CCCCcEEEEEehhhhhhcccC-ccccCCCCCCccCCCCcHHHHHHHHHH
Confidence 321 011111221 134578889999987 556799999987664210000 000000000001112223333333444
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeE
Q 013521 340 SPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHI 419 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~i 419 (441)
+..+...+++..++..+..+++.+.|++.|++....+..+.+.++.+. .++ . + |-.+.+- ...+
T Consensus 283 ~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~---~~~----~-~-~w~l~~~-------~~~~ 346 (380)
T PRK02769 283 RSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPS---ERI----W-K-KWHLATS-------GNQA 346 (380)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCC---HHH----H-h-CeeEccc-------CCEE
Confidence 333445568888899999999999999889988776777777776652 222 1 2 4444432 2479
Q ss_pred EEEee--cCHHHHHHHHHHHHhh
Q 013521 420 RVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 420 Rls~~--~~~~~~~~~l~~l~~~ 440 (441)
|+.+. .+++.+++.++.|...
T Consensus 347 hi~~~~~~~~~~~~~f~~dl~~~ 369 (380)
T PRK02769 347 HIITMPHHNKQQIDSLIDELIFD 369 (380)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
Confidence 99973 3677888888888653
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-14 Score=141.83 Aligned_cols=344 Identities=14% Similarity=0.130 Sum_probs=207.3
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC--CCCC-CcCcHHHHHHHHHHHhhhCCCCC----CcEEEcCCcH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK--GYGA-EQGNMALRTAIADKFYKDMGIEG----DEIFISDGAQ 145 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~-~~g~~~lr~~ia~~l~~~~~~~~----~~I~~t~G~~ 145 (441)
.-|+|=-.++ ..++.+.+++...+.+... .++. +|.. .....++.....+...+.|+.+. -||-.-+|++
T Consensus 149 ~~l~LIASEN--~~S~av~~algS~ltnkYa-EG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~ 225 (586)
T PLN02271 149 KGIELIASEN--FVCRAVMEALGSHLTNKYS-EGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTS 225 (586)
T ss_pred cCeeeccccc--cCCHHHHHHhcCcccccCC-CCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHH
Confidence 3466655544 2567778787776654322 2221 3322 22223333333333334677766 6788889988
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCchhhHhHHH------HhccccccccccCccceeEEeecCCCCCccCCCC------CCC
Q 013521 146 SDISRLQMLLGSNVTVAVQDPSFPAYIDTSV------IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS------TTS 213 (441)
Q Consensus 146 ~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~------~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~------~~~ 213 (441)
..+..+.++++|||+|+..+..|.+...... .....|. +.+++.++++++++ ..|++ ...
T Consensus 226 AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~-------~~~~vpY~~d~~~g-~IDyd~lek~a~~~ 297 (586)
T PLN02271 226 ANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASI-------FFESLPYKVNPQTG-YIDYDKLEEKALDF 297 (586)
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccc-------eEEEEEcccccccC-ccCHHHHHHHhhhc
Confidence 8888889999999999999988887654321 1111121 13555555654432 22322 247
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC-CC-CCcccccCCCcceeEEEecCCcccCCc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-PS-PRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~-~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
++|+|++..-.|| ..++ +++|.++|+++|+++++|.+|..-... +. +.++. ...++.+|.+|++ .
T Consensus 298 rPKLII~g~Sayp--r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~------~aDvvt~TTHKtL--r 364 (586)
T PLN02271 298 RPKILICGGSSYP--REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFD------YCDIVTSTTHKSL--R 364 (586)
T ss_pred CCeEEEECchhcc--CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCCc------CCcEEEeCCcccC--C
Confidence 8999888666787 5566 778888889999999999999853322 21 22221 2348999999998 5
Q ss_pred cceeEEEEeecccccc------------CCchhHHHHHHHHhhhcCCCcHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHH
Q 013521 292 GVRLGWTVVPEELRYS------------NGYPVIKDFNRIVCTCFNGASNIVQAGGLAC-LSPDGFQALRTVIDYYKENA 358 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-l~~~~~~~~~~~~~~~~~~~ 358 (441)
|.|-|.++++++.... ..+.+.+++.........+.+.....|+++. +.+-.....+.+.++..+|.
T Consensus 365 GPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NA 444 (586)
T PLN02271 365 GPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNA 444 (586)
T ss_pred CCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 7778998887642100 0011222222211112222222223333322 22111233478888889999
Q ss_pred HHHHHHHHhCCCeeeC-CCCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcC---CCCCCeEEEEe------ecCH
Q 013521 359 KIIVDAFQSLGLKVNG-GKNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFG---PGGNEHIRVSA------FGHR 427 (441)
Q Consensus 359 ~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~---~~~~~~iRls~------~~~~ 427 (441)
+.|.+.|.+.|+++.. ..+...+|+++... .....+++.|++.||.+.--..++ +..++.|||+. +..+
T Consensus 445 kaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e 524 (586)
T PLN02271 445 QALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLE 524 (586)
T ss_pred HHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCc
Confidence 9999999999998753 34566799999632 246778888999999986432222 22367899994 2246
Q ss_pred HHHHHHHHHHHhh
Q 013521 428 EYISEACRRLKNF 440 (441)
Q Consensus 428 ~~~~~~l~~l~~~ 440 (441)
+++++..+.|.++
T Consensus 525 ~d~~~iA~~i~~~ 537 (586)
T PLN02271 525 SDFETIADFLLRA 537 (586)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-15 Score=156.04 Aligned_cols=299 Identities=12% Similarity=0.074 Sum_probs=199.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH----HHHHH-HHHhcCC-CC----EEEEeCCCchhhHhHHHHhccccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQ----SDISR-LQMLLGS-NV----TVAVQDPSFPAYIDTSVIVGQAGK 183 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~----~al~~-l~~l~~~-gd----~Vlv~~p~y~~~~~~~~~~g~~~~ 183 (441)
+|+.++.+.+.+++.+-+|. +.|+++++++ .++.+ +..+.++ || +|+++...|......+...|
T Consensus 564 ~g~~~~~~~~r~~la~i~g~--~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G---- 637 (993)
T PLN02414 564 QGYQEMFEDLGDLLCEITGF--DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCG---- 637 (993)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCC----
Confidence 46666655555555554465 8999999999 66666 6777765 88 89999999999888888877
Q ss_pred cccccCccceeEEeecCCCCCccCC-CCC--C---CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccc
Q 013521 184 FLKETGKYRNIVYMNCRPENNFFPD-LST--T---SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA 257 (441)
Q Consensus 184 ~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~ 257 (441)
.+++.++.+.++..+++ ++. . +++++|++++|+|-+|...+ +++|+++|+++|+++++|.++.
T Consensus 638 --------~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgAq~ 706 (993)
T PLN02414 638 --------MKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGANM 706 (993)
T ss_pred --------CEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEecCH
Confidence 69999999765543322 211 1 37889999999999998877 8999999999999999999986
Q ss_pred ccccCCCCCcccccCCCcceeEEEecCCcccC----CccceeEEEEeeccccccCCch-hH-H--H-HHHHHhhhcCC--
Q 013521 258 AYITDPSPRSIYEIPGAREVAIEISSFSKFAG----FTGVRLGWTVVPEELRYSNGYP-VI-K--D-FNRIVCTCFNG-- 326 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~----~~G~r~G~l~~~~~~~~~~~~~-~~-~--~-~~~~~~~~~~~-- 326 (441)
--... ...... .+.++++.|.+|+|+ ..|..+|++.+.+++... .+. .+ . . ..+.......+
T Consensus 707 ~a~~~--l~~p~~----~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~-lPg~~v~~~~~~~~r~~~s~iGt~~ 779 (993)
T PLN02414 707 NAQVG--LTSPGF----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF-LPSHPVVPTGGIPRPEKTQPLGTIS 779 (993)
T ss_pred HhccC--cCCccc----cCCCEEEecCCccCCcCcccCCCCeeeEEEchhhccc-CCCCccccCCCcccccCCCCcCCcc
Confidence 31111 111112 234599999999775 244569999988876421 110 00 0 0 11111110111
Q ss_pred ----CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceE--EEEEcC------CCChHHH
Q 013521 327 ----ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPY--VWVQFP------GSSSWDV 393 (441)
Q Consensus 327 ----~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~--~~~~~~------~~~~~~~ 393 (441)
.+.....++...+...|.+.+++..+....+..++.+.|.+. ++.+..+.+..+ ..+.++ +.+..++
T Consensus 780 ~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di 859 (993)
T PLN02414 780 AAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDV 859 (993)
T ss_pred chhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccccccCCCHHHH
Confidence 111333445555555566778888888999999999999774 555544333222 333443 2445788
Q ss_pred HHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 394 FAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 394 ~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.++|+ ++||....-+ | + ..+++|++. ..+++++++++++|..+
T Consensus 860 ~krL~-d~Gihapt~~-~-p-v~~~lmiepTE~~skeelDrf~~al~~i 904 (993)
T PLN02414 860 AKRLM-DYGFHAPTMS-W-P-VPGTLMIEPTESESKAELDRFCDALISI 904 (993)
T ss_pred HHHHH-HcCcEEeeec-c-c-cCCEEEEEeeeeCCHHHHHHHHHHHHHH
Confidence 88888 5699865433 4 3 478899995 56899999999998764
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-14 Score=139.89 Aligned_cols=340 Identities=11% Similarity=0.076 Sum_probs=192.8
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~ 145 (441)
.++.++|+..|. ..+ ..+|.+.+++.+.+.+... ....+... +....+|+.+.+..+-. .+.|+++++++
T Consensus 40 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~--~~~~~~~~----~~~~~lae~L~~~~p~~~~~~v~f~~SGs 113 (445)
T PRK08593 40 DGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIH--YTPAYMYH----EPLVRLAKKLCELAPGDFEKRVTFGLSGS 113 (445)
T ss_pred CCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccC--ccccccCC----HHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence 356788886553 222 3679999999998875321 11111122 33344444443322322 25899999999
Q ss_pred HHHHH-HH--HhcCCCCEEEEeCCCchhhHhHHHHh-cccc----ccccccCccceeEEeecCCCCC--c---c------
Q 013521 146 SDISR-LQ--MLLGSNVTVAVQDPSFPAYIDTSVIV-GQAG----KFLKETGKYRNIVYMNCRPENN--F---F------ 206 (441)
Q Consensus 146 ~al~~-l~--~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~----~~~~~~~~~~~v~~v~~~~~~~--~---~------ 206 (441)
+|... +. ........|+...-+|++....+... +... .+.+.. ..+..+|..+... + .
T Consensus 114 eA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (445)
T PRK08593 114 DANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLL---PGFVHIPFPDKYRGMYEEPDANFVEE 190 (445)
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCC---CCcEEeCCCccccccccCCcHHHHHH
Confidence 99886 42 22333457888899999865433322 2110 000000 1233333221100 0 0
Q ss_pred --CCCC-------CCCCccEEEEcCCCCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 207 --PDLS-------TTSRTDIIFFCSPNNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 207 --~~~~-------~~~~~~~v~i~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
..++ ..+++.+|++.-.+...|.+ .|++.+++|.++|++||+++|.||++..|...+.......+.-.+|
T Consensus 191 ~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pD 270 (445)
T PRK08593 191 YLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPD 270 (445)
T ss_pred HHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCC
Confidence 0010 01345565543337777876 7899999999999999999999999986644332211122221344
Q ss_pred eeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013521 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE 356 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 356 (441)
+-+++|.++ .|+++|+++++++++ +.+.......+.+.++++..++.+.++.-.. +++.++.++
T Consensus 271 ----i~t~gK~l~-~G~p~gav~~~~~i~--------~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~---~~l~~~~~~ 334 (445)
T PRK08593 271 ----LMSFGKSLA-GGMPMSAIVGRKEIM--------ESLEAPAHLFTTGANPVSCAAALATIDMIED---ESLLQRSAE 334 (445)
T ss_pred ----Eeeeccccc-CCcccEEEEEcHHHH--------hhhccCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHH
Confidence 347999998 889999999998773 3332111222344677888877777752111 234445555
Q ss_pred HHHHHHHHHHhC----CCeeeCCCCceEEEEEcCCC------C---hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe
Q 013521 357 NAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGS------S---SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA 423 (441)
Q Consensus 357 ~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~------~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~ 423 (441)
..+++.+.|+++ ++......-|.++.+.+... + ...+...+++ +||.+.+. ..+.+|++.
T Consensus 335 ~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~------~~~~lr~~p 407 (445)
T PRK08593 335 KGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFE-HGVVIIAV------AGNVLRFQP 407 (445)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHH-CCeEEecc------CCCEEEEEC
Confidence 555555555543 32111112355555555310 1 1235555554 59998663 135799884
Q ss_pred --ecCHHHHHHHHHHHHhhC
Q 013521 424 --FGHREYISEACRRLKNFL 441 (441)
Q Consensus 424 --~~~~~~~~~~l~~l~~~l 441 (441)
..+++++++++++|.+++
T Consensus 408 ~l~~t~~~id~~~~~l~~~l 427 (445)
T PRK08593 408 PLVITYEQLDTALNTIEQAF 427 (445)
T ss_pred CCccCHHHHHHHHHHHHHHH
Confidence 558999999999998753
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=140.46 Aligned_cols=315 Identities=13% Similarity=0.102 Sum_probs=184.8
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCC-CcEEEc-CCcHHHHHH-HHHhcCCC
Q 013521 84 QPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEG-DEIFIS-DGAQSDISR-LQMLLGSN 158 (441)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~-~~I~~t-~G~~~al~~-l~~l~~~g 158 (441)
...|+.+++++.+..... -...++.+ ..-..+.|+.+++++ ++++ .+|+++ +++|.+++. +..++.+
T Consensus 12 ~~~~~~v~~a~~~~~~~~---~~~~hr~~~f~~~~~~~r~~l~~l~----~~~~~~~v~f~~gs~T~a~~~~~~~l~~~- 83 (361)
T TIGR01366 12 SKVRLEQLQALTTTAASL---FGTSHRQAPVKNLVGRVREGLAELF----SLPDGYEVILGNGGATAFWDAATFGLIEK- 83 (361)
T ss_pred cCCCHHHHHHHHhcCccc---cccCcCChHHHHHHHHHHHHHHHHh----CCCCCceEEEECCchhHHHHHHHHhcccc-
Confidence 456788888877531100 01123332 234455677777765 7654 478886 559999997 6677643
Q ss_pred CEEEEeCCCchh-hHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHH
Q 013521 159 VTVAVQDPSFPA-YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLK 237 (441)
Q Consensus 159 d~Vlv~~p~y~~-~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~ 237 (441)
+.+++..-.|.. +.+.+...... .++..++.+... .++....+++++|.+++..|.||.+.|. +
T Consensus 84 ~~l~i~~G~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~--~~~~~~~~~~~lV~~~h~et~tG~~~pi---~ 148 (361)
T TIGR01366 84 KSLHLSFGEFSSKFAKAVKLAPWL----------GEPIIVTADPGS--APEPQADPGVDVIAWAHNETSTGVAVPV---R 148 (361)
T ss_pred cccEEecCHHHHHHHHHHHhhhcc----------CCceEEecCCCC--CCCCccCCCCCEEEEcccCCccceeccc---c
Confidence 333444444532 33333332100 134555554322 2233334789999999999999999994 4
Q ss_pred HHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC--------
Q 013521 238 KLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG-------- 309 (441)
Q Consensus 238 ~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~-------- 309 (441)
+| ++++|+++|+|.+.+-. ..+..+.. ..+++.|..|.+|.+| .++.++++++.+....
T Consensus 149 ~I---~~~~g~~~iVDavqs~g---~~~idv~~------~D~~~~s~~K~lg~~~-Gl~~~~~s~~~~~~~~~~~~~~~~ 215 (361)
T TIGR01366 149 RP---EGSDDALVVIDATSGAG---GLPVDIAE------TDVYYFAPQKNFASDG-GLWLAIMSPAALERIEAIAASGRW 215 (361)
T ss_pred cc---cccCCCeEEEEcCcccc---CCCCCHHH------CCEEEEEchhhcCCCC-ceEEEEECHHHHhhhhcccCCCCC
Confidence 45 47899999999998732 11333322 2489999999999764 3666677776652211
Q ss_pred -chhHHHHHHHH-----hhhcCCCcHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeeCC-C--
Q 013521 310 -YPVIKDFNRIV-----CTCFNGASNI---VQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-LKVNGG-K-- 376 (441)
Q Consensus 310 -~~~~~~~~~~~-----~~~~~~~~~~---~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~-- 376 (441)
+...+ +.... ....++++.. +..+++..+.+.+ .++.+.++.++..+++++.|.+.+ ++.... .
T Consensus 216 ~p~~~d-~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~g--g~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~ 292 (361)
T TIGR01366 216 VPEFLS-LPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNG--GLDWAVARTADSSSRLYSWAQERPYATPFVTDPGK 292 (361)
T ss_pred Cchhhh-HHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhh
Confidence 00111 11111 1223333444 2233444443331 146677888899999999999885 454421 1
Q ss_pred -CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 377 -NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 377 -~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
......+.++ +.+..++...| +++||.+.++. +..+...+|+|+ +++.++++++++.|+++
T Consensus 293 ~s~~v~~v~~~~g~~~~~v~~~L-~~~gI~i~~~~--~~l~~~~vRis~~~~~t~~di~~l~~al~~~ 357 (361)
T TIGR01366 293 RSQVVGTIDFVDDIDAATVAKIL-RANGIVDTEPY--RKLGRNQLRVAMFPAIDPDDVEALTECVDWV 357 (361)
T ss_pred cccceEEEECCCccCHHHHHHHH-HHCCCeeccCc--cccCCCcEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1111233333 44556666666 55699998764 223456899996 45899999999999875
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=144.40 Aligned_cols=342 Identities=13% Similarity=0.093 Sum_probs=197.0
Q ss_pred CCCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..| ...+ ..+|.+.+++.+.+.+.. ....|... +.+..+|+.|....+-..+.+++++++++
T Consensus 80 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~---~~~~~~~~----~~~~~lae~L~~~~p~~~~~v~f~~SGsE 152 (459)
T PRK11522 80 QGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQP---LHSQELLD----PLRAMLAKTLAALTPGKLKYSFFCNSGTE 152 (459)
T ss_pred CCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCc---ccccccCC----HHHHHHHHHHHHhCCCCCCEEEEeCCchH
Confidence 35678888766 3333 367899999999887642 12222223 34444555543322333468999999999
Q ss_pred HHHH-H--HHhcC--C-CCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCCCccCCCCC----CCCc
Q 013521 147 DISR-L--QMLLG--S-NVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPENNFFPDLST----TSRT 215 (441)
Q Consensus 147 al~~-l--~~l~~--~-gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~~~----~~~~ 215 (441)
|... + ..... . ...|+....+|++.............+.. .......+..+|..+...+...++. ..++
T Consensus 153 Ave~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i 232 (459)
T PRK11522 153 SVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDV 232 (459)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcE
Confidence 9886 3 22222 2 34688888999997544433321111000 0000011223332211011000111 1234
Q ss_pred cEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc-
Q 013521 216 DIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG- 292 (441)
Q Consensus 216 ~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G- 292 (441)
.+++ ..| +.-.|.+ .|.+.++++.++|++||+++|.||++..|...+.......+.-.|| | -+++|.+| .|
T Consensus 233 AavI-vEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PD--i--vt~gK~lg-gG~ 306 (459)
T PRK11522 233 AAVI-LEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPD--I--LCLAKALG-GGV 306 (459)
T ss_pred EEEE-EecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCC--E--EEechhhh-CCC
Confidence 4544 455 5556765 5788999999999999999999999976543332111212222344 3 37899998 78
Q ss_pred ceeEEEEeeccccccCCchhHHHHH--HHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFN--RIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-- 368 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 368 (441)
+.+|.+++.+++. +.+. ......+.+.++++..++.+.|+.-.. +.+.++.++.-+++.+.|+++
T Consensus 307 ~Pigav~~~~~i~--------~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~ 375 (459)
T PRK11522 307 MPIGATIATEEVF--------SVLFDNPFLHTTTFGGNPLACAAALATINVLLE---QNLPAQAEQKGDYLLDGFRQLAR 375 (459)
T ss_pred ccceeEEEcHHHH--------HHhccCCcccCCCCCCCHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999987763 3332 111223344578888878777762111 234566666667777777654
Q ss_pred CCe----eeCCCCceEEEEEcCCCC-hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 369 GLK----VNGGKNAPYVWVQFPGSS-SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 369 g~~----~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
... -.. ..|.++-+.+.... ...+...+++ +||.+.+.. .+.+.+|+.. ..+++++++++++|.+++
T Consensus 376 ~~~~~i~~Vr-G~Gl~~giel~~~~~~~~i~~~l~~-~Gvl~~~~~----~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l 449 (459)
T PRK11522 376 EYPDLVQEAR-GKGMLMAIEFVDNEIGYNFASEMFR-QRVLVAGTL----NNAKTIRIEPPLTLTIEQCEQVLKAARKAL 449 (459)
T ss_pred hCCCceeeEE-eceeEEEEEecCchHHHHHHHHHHH-CCeEEEecC----CCCCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 121 111 24777778775322 2345555555 599997632 1346899884 568999999999998753
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-15 Score=142.40 Aligned_cols=214 Identities=20% Similarity=0.227 Sum_probs=138.5
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhcc-ccccccccCccc
Q 013521 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQ-AGKFLKETGKYR 192 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~ 192 (441)
-...|.+.||+.- + .+.+++++.+++|+.. +..++++||.|++....|.+....+...-. .| +
T Consensus 56 t~~~le~~la~Le----~--g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~g---------v 120 (386)
T PF01053_consen 56 TVRALEQRLAALE----G--GEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFG---------V 120 (386)
T ss_dssp HHHHHHHHHHHHH----T---SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTT---------S
T ss_pred cHHHHHHHHHHhh----c--ccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccC---------c
Confidence 4456677776653 2 3788999999999976 788999999999999999998777764321 11 4
Q ss_pred eeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC-cEEEEcccccccccCCCCCccccc
Q 013521 193 NIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANG-SIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 193 ~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~-~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
++.+++....+.+...+ .+++++||+-+|.||+..+.+ +++|+++|+++| +++|+|+.+.....- .++ .+
T Consensus 121 ~v~~~d~~d~~~l~~~l--~~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~---~pL-~~ 191 (386)
T PF01053_consen 121 EVTFVDPTDLEALEAAL--RPNTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQ---NPL-EL 191 (386)
T ss_dssp EEEEESTTSHHHHHHHH--CTTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC----GG-GG
T ss_pred EEEEeCchhHHHHHhhc--cccceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceeee---ccC-cC
Confidence 77777553211111111 358999999999999988877 999999999998 999999999742211 112 12
Q ss_pred CCCcceeEEEecCCcccCCcc-ceeEEEEeec-cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHH
Q 013521 272 PGAREVAIEISSFSKFAGFTG-VRLGWTVVPE-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRT 349 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 349 (441)
+-+|++.|.+|.++-.| .=.|.+++++ ..+ .+.+...........++....... .+.+.+.-
T Consensus 192 ----GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~-------~~~l~~~~~~~G~~~~p~da~ll~-----rgl~Tl~~ 255 (386)
T PF01053_consen 192 ----GADIVVHSATKYLSGHSDVMGGAVVVNGSSEL-------YDRLREFRRLLGATLSPFDAWLLL-----RGLRTLPL 255 (386)
T ss_dssp ----T-SEEEEETTTTTTTSSSE-EEEEEESSHHHH-------HHHHHHHHHHHT-B--HHHHHHHH-----HHHTTHHH
T ss_pred ----CceEEEeeccccccCCcceeeEEEEECchhhh-------hhhhcchhhhcCccchHHHHHHHh-----cCCCcHHH
Confidence 23499999999886222 2267888765 222 344544444444444444322222 34445577
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 013521 350 VIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~ 368 (441)
+.++..++...+.+.|+++
T Consensus 256 R~~~~~~nA~~lA~~L~~h 274 (386)
T PF01053_consen 256 RMERQNENAEALAEFLEEH 274 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 7788888999999999988
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-14 Score=136.81 Aligned_cols=217 Identities=20% Similarity=0.237 Sum_probs=148.5
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCcc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 191 (441)
.+-...|.++++.+- ..++.+.++.+++||.. ++.++++||.|++....|.+-+..+.....+..
T Consensus 62 nPT~~~lE~~~a~LE------g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~g-------- 127 (396)
T COG0626 62 NPTRDALEEALAELE------GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFG-------- 127 (396)
T ss_pred CccHHHHHHHHHHhh------CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcC--------
Confidence 345567777777762 46788999999999998 789999999999999999887777665543221
Q ss_pred ceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc
Q 013521 192 RNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 192 ~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
+++.+++..........+. .+++|+|++-+|.|||-.+.+ +.+|+++|+++|+++|+|..|....+.. | + .+
T Consensus 128 i~~~~~d~~~~~~~~~~~~-~~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~-P--L-~~ 199 (396)
T COG0626 128 VEVTFVDPGDDEALEAAIK-EPNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQR-P--L-EL 199 (396)
T ss_pred eEEEEECCCChHHHHHHhc-ccCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccC-h--h-hc
Confidence 4666665432211111111 158999999999999987777 9999999999999999999998533221 1 1 11
Q ss_pred CCCcceeEEEecCCcccCCccce--eEEEEeeccccccCCchhHHHHHHHHh-hhcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 272 PGAREVAIEISSFSKFAGFTGVR--LGWTVVPEELRYSNGYPVIKDFNRIVC-TCFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G~r--~G~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
+-.|++.|.+|.++ ..-. .|.++++++.+ .+.+..... ......++... ++...+.+-+.
T Consensus 200 ----GaDIVvhSaTKyl~-GHsDvl~G~v~~~~~~~-------~~~~~~~~~~~~G~~l~p~dA-----~l~lRGlkTL~ 262 (396)
T COG0626 200 ----GADIVVHSATKYLG-GHSDVLGGVVLTPNEEL-------YELLFFAQRANTGAVLSPFDA-----WLLLRGLRTLA 262 (396)
T ss_pred ----CCCEEEEecccccc-CCcceeeeEEecChHHH-------HHHHHHHHHhhcCCCCCHHHH-----HHHHhccchHH
Confidence 23499999999987 4333 47666666664 333322222 23333444442 22224556667
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 013521 349 TVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~ 368 (441)
-+.++.+++...+.+.|+++
T Consensus 263 ~Rm~~~~~nA~~IA~~L~~~ 282 (396)
T COG0626 263 LRMERHNENALKIAEFLADH 282 (396)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 77888889999999999987
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-14 Score=131.30 Aligned_cols=303 Identities=19% Similarity=0.210 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEEeC
Q 013521 88 DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAVQD 165 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv~~ 165 (441)
+...+++.+.++ ++....++ -..++.+++|+|+ | ....+.++++|.|+.+ +.++ ++|||+|++++
T Consensus 15 ~~e~~~v~~vl~-----sg~i~~G~--~v~~FE~~~ae~~----G--~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps 81 (374)
T COG0399 15 EEELAAVQEVLK-----SGWLTGGP--FVRRFEQAFAEYL----G--VKYAVAVSSGTAALHLALLALAIGPGDEVIVPS 81 (374)
T ss_pred hHHHHHHHHHHH-----cCCeecCh--HHHHHHHHHHHHh----C--CCeEEEecChHHHHHHHHHhcCCCCCCEEEecC
Confidence 566777777776 33333333 5688999999996 4 4678888888889887 5544 69999999999
Q ss_pred CCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEcCCCCccccCCCHHHHHHHH
Q 013521 166 PSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFCSPNNPTGHAATWQQLKKLV 240 (441)
Q Consensus 166 p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~ 240 (441)
-+|......+...| ++++++++|++ .+..|.+ + ++++|+|+..+- -|...+ +++|.
T Consensus 82 ~TfvATan~i~~~G------------a~PVFvDid~~-T~nid~~~ie~aIt~~tKAIipVhl---~G~~~d---m~~i~ 142 (374)
T COG0399 82 FTFVATANAVLLVG------------AKPVFVDIDPD-TLNIDPDLIEAAITPRTKAIIPVHL---AGQPCD---MDAIM 142 (374)
T ss_pred CchHHHHHHHHHcC------------CeEEEEecCCc-ccCCCHHHHHHHcccCCeEEEEehh---ccCCCC---HHHHH
Confidence 99999999999999 69999999976 3344432 2 577999887654 344445 88999
Q ss_pred HHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecC--CcccCCccceeEEEEeeccccccCCchhHHHHH
Q 013521 241 EFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSF--SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFN 317 (441)
Q Consensus 241 ~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 317 (441)
++|++||++||+|.+++... +.+ ..+.++. .+.+.|| +|.++ +| --|.++++++.+ .+..+
T Consensus 143 ~la~~~~l~vIEDaAqa~Ga~y~g--k~vGt~G-----d~~~fSF~~~K~it-tg-EGGav~tnd~el-------a~k~~ 206 (374)
T COG0399 143 ALAKRHGLPVIEDAAQAHGATYKG--KKVGSFG-----DIGAFSFHATKNLT-TG-EGGAVVTNDEEL-------AEKAR 206 (374)
T ss_pred HHHHHcCCeEEEEcchhccCeecC--ccccccc-----ceEEEEecCCCCcc-cc-CceEEEeCCHHH-------HHHHH
Confidence 99999999999999988432 222 2333332 2566677 79987 66 669999988775 34444
Q ss_pred HHHhhhcC------------CCc-HHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCc----
Q 013521 318 RIVCTCFN------------GAS-NIV-QAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNA---- 378 (441)
Q Consensus 318 ~~~~~~~~------------~~~-~~~-~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~---- 378 (441)
.++..... +.+ .+. ..|++.. ...+.++++.++-++..+...+.|+++ ++.+.....+
T Consensus 207 ~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl---~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~ 283 (374)
T COG0399 207 SLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGL---AQLERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHA 283 (374)
T ss_pred HHHHhCcCCCccccceeeecccccCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceee
Confidence 33332211 111 111 1112222 223445666666666677777778766 3444332222
Q ss_pred eE-EEEEcCCC-ChHHHHHHHHHhcCe----EEeCCCCc--------CC--C-------CCCeEEEEeec--CHHHHHHH
Q 013521 379 PY-VWVQFPGS-SSWDVFAEILEKTHI----LTIPGSGF--------GP--G-------GNEHIRVSAFG--HREYISEA 433 (441)
Q Consensus 379 ~~-~~~~~~~~-~~~~~~~~ll~~~gi----~v~pg~~f--------~~--~-------~~~~iRls~~~--~~~~~~~~ 433 (441)
.+ ..+.++.. .+.+.+...|++.|| ...|-... .+ . ....++|-+.. +.+++++.
T Consensus 284 ~~~~~i~~~~~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V 363 (374)
T COG0399 284 WHLYTILVDEEGISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRV 363 (374)
T ss_pred eeeeEEEecCCCCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHH
Confidence 11 22334421 344555555666654 44453221 00 0 13457776533 78999999
Q ss_pred HHHHHhhC
Q 013521 434 CRRLKNFL 441 (441)
Q Consensus 434 l~~l~~~l 441 (441)
++.|++++
T Consensus 364 ~~~l~~~~ 371 (374)
T COG0399 364 IEALKEVL 371 (374)
T ss_pred HHHHHHHh
Confidence 99998764
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-14 Score=134.99 Aligned_cols=341 Identities=13% Similarity=0.090 Sum_probs=213.9
Q ss_pred CCCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCc
Q 013521 69 HPDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGA 144 (441)
Q Consensus 69 ~~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~ 144 (441)
..++.+|||..|. ... ..+|.+.+++++.+..+.. ....|... +-..++|+.|...... ....+++++++
T Consensus 53 vdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h--~~~~~~~~----e~~v~~ae~L~~~~p~~~~~~~~f~~sG 126 (447)
T COG0160 53 VDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNH--THTRDLYY----EPYVELAEKLTALAPGSGLKKVFFGNSG 126 (447)
T ss_pred CCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhc--ccCCcccc----hhHHHHHHHHHHhCCcccCCeEEecCCc
Confidence 3467789998854 333 4789999999999887641 22223222 3444555555443344 45689999999
Q ss_pred HHHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHH-hcccccc----ccccCccceeEEeecCCCCC--ccC---C---
Q 013521 145 QSDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVI-VGQAGKF----LKETGKYRNIVYMNCRPENN--FFP---D--- 208 (441)
Q Consensus 145 ~~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~----~~~~~~~~~v~~v~~~~~~~--~~~---~--- 208 (441)
++|.+. + ......+..|+...-+|++....... .|..... .+.. -.+..+|....-. +.. +
T Consensus 127 aeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~---~~v~~~Pyp~~yr~p~~~~~~~~~~ 203 (447)
T COG0160 127 AEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLP---PGVYHVPYPNPYRCPFGIGGEECGD 203 (447)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCC---CCeEEecCCccccCcccCchhhhhH
Confidence 999886 3 33334456788889999886444333 3332111 1111 1355555543111 110 0
Q ss_pred -----CC----C----CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC
Q 013521 209 -----LS----T----TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG 273 (441)
Q Consensus 209 -----~~----~----~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~ 273 (441)
++ . ..++.++++ .| +.-.|.+ .|++.++++.++|++||+++|.||+...+...+.-....+..-
T Consensus 204 ~~~~~~e~~i~~~~~~~~~vAaiI~-EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv 282 (447)
T COG0160 204 DALEYIERALFDLEVGPEEVAAIII-EPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGV 282 (447)
T ss_pred HHHHHHHHHHHhhcCCCCceeEEEE-ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCC
Confidence 00 0 135666554 55 7777755 6888999999999999999999999998877664333433332
Q ss_pred CcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013521 274 AREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDY 353 (441)
Q Consensus 274 ~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 353 (441)
.|| |-++||.+| .|+.+|.++..+++. + +..-....++..++++.+++.+.|+.-. -+.+.++
T Consensus 283 ~PD----ivt~aK~ig-~G~Pl~avv~r~ei~--------~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie---~e~L~~~ 345 (447)
T COG0160 283 EPD----IVTLAKSLG-GGLPLSAVVGRAEIM--------D-WPPGGHGGTFGGNPVACAAALAVLDVIE---EENLLER 345 (447)
T ss_pred CCC----EEEeccccc-CCCceeEEeccHHhc--------c-cCCcccCCCCCcCHHHHHHHHHHHHHHH---HccHHHH
Confidence 345 446999999 799999999998874 2 2222223335678999988888887211 1356666
Q ss_pred HHHHHHHHHHHHHhC--CCeeeCC--CCceEEEEEcCCC-----C----hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEE
Q 013521 354 YKENAKIIVDAFQSL--GLKVNGG--KNAPYVWVQFPGS-----S----SWDVFAEILEKTHILTIPGSGFGPGGNEHIR 420 (441)
Q Consensus 354 ~~~~~~~l~~~L~~~--g~~~~~~--~~~~~~~~~~~~~-----~----~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iR 420 (441)
.++.-+++.+.|.++ ....... --|.++-+++... . ...+..++++ +|+.+..+.. ..+.||
T Consensus 346 a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~-~Glil~~~G~----~~nviR 420 (447)
T COG0160 346 AAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFE-RGLLLLTCGP----HGNVLR 420 (447)
T ss_pred HHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHH-cCCEEeccCC----CCcEEE
Confidence 666777777777655 2222221 2367777776411 1 2234555554 5998877532 256899
Q ss_pred EE--eecCHHHHHHHHHHHHhhC
Q 013521 421 VS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 421 ls--~~~~~~~~~~~l~~l~~~l 441 (441)
|. +.-++++++++++.|.++|
T Consensus 421 i~PPL~is~e~~d~~l~il~~al 443 (447)
T COG0160 421 ILPPLTISDEELDEGLDILEEAL 443 (447)
T ss_pred EeCCcccCHHHHHHHHHHHHHHH
Confidence 98 4558999999999998764
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-14 Score=131.24 Aligned_cols=338 Identities=19% Similarity=0.190 Sum_probs=219.1
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHH-hhhCCCCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKF-YKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l-~~~~~~~~~~I~~t~G~~~al~ 149 (441)
+.|+|=-.++ -.++.+.+++-..+.+... .++. +|....-+.+..|.+|.-. ++.|+.+--|+-..||++..+.
T Consensus 27 ~~ieLIASEN--~~S~aV~~A~gS~ltnKYA-EGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~a 103 (413)
T COG0112 27 EHIELIASEN--FTSPAVMEAQGSDLTNKYA-EGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQA 103 (413)
T ss_pred hceeeeeccc--cCCHHHHHHHhhhhhhccc-cCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHH
Confidence 3466654443 2568888888887764432 2322 3333333444555555444 3478999899999999999999
Q ss_pred HHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEEEcCC
Q 013521 150 RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIFFCSP 223 (441)
Q Consensus 150 ~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~i~~p 223 (441)
.++++++|||+|+-.+..+.++..-....+..| ++.+++..+++.++. ..|.+. ..+||+|+.-..
T Consensus 104 v~~All~pGDtimgm~l~~GGHltHg~~v~~sG-------~~~~~v~Y~vd~et~-~IDyD~~~k~a~e~kPK~ii~G~S 175 (413)
T COG0112 104 VYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSG-------KLFNVVSYGVDPETG-LIDYDEVEKLAKEVKPKLIIAGGS 175 (413)
T ss_pred HHHHHcCCCCeEecccCCCCCcccCCCCCCccc-------eeEEeEecccccccC-ccCHHHHHHHHHHhCCCEEEECcc
Confidence 999999999999999988888754332222222 225888888887633 344332 478999876333
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
..|- .++ ++++.++|.+.|.++++|-+|-- +...+. |.|+.. ..++.+|.+|+| +|.|-|.+.++
T Consensus 176 aY~r--~id---~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~------AdvVTtTTHKTl--rGPrGG~Il~~ 242 (413)
T COG0112 176 AYSR--PID---FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH------ADVVTTTTHKTL--RGPRGGIILTN 242 (413)
T ss_pred cccc--ccC---HHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc------cceEeCCcccCC--CCCCceEEEec
Confidence 3332 234 78888888899999999999864 444443 333322 238899999998 79999999988
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeC-CCCce
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLGLKVNG-GKNAP 379 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~ 379 (441)
++.+ .+.+.+.......+.+.+...|+.+.--.+.. ..++...++.-+|.+.|.+.|.+.|+++.. ..+..
T Consensus 243 ~eel-------~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTdnH 315 (413)
T COG0112 243 DEEL-------AKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGTDNH 315 (413)
T ss_pred cHHH-------HHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCccce
Confidence 7443 45555433333333333333333332211111 234777888889999999999999998864 23445
Q ss_pred EEEEEcCC-CChHHHHHHHHHhcCeEEeC-CCCcC---CCCCCeEEEEee------cCHHHHHHHHHHHHhhC
Q 013521 380 YVWVQFPG-SSSWDVFAEILEKTHILTIP-GSGFG---PGGNEHIRVSAF------GHREYISEACRRLKNFL 441 (441)
Q Consensus 380 ~~~~~~~~-~~~~~~~~~ll~~~gi~v~p-g~~f~---~~~~~~iRls~~------~~~~~~~~~l~~l~~~l 441 (441)
.+.+++.. .-....+..+|++.||.+.- +-.|. +..+..|||+.. -.++++++..+.|.++|
T Consensus 316 l~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl 388 (413)
T COG0112 316 LVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVL 388 (413)
T ss_pred EEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 68888862 23456778888899999873 22233 334678999951 14678888877776653
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-14 Score=137.57 Aligned_cols=323 Identities=10% Similarity=0.013 Sum_probs=200.8
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-C-CcEEE--cCCcHHHHHH-HHHhc----
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-G-DEIFI--SDGAQSDISR-LQMLL---- 155 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~-~~I~~--t~G~~~al~~-l~~l~---- 155 (441)
++.+.+.+.+...+.... .++.......++.+.+.+|+.+.++.+ + ++++. |+|+|++.++ +....
T Consensus 52 ~~~p~~~~~~~~~l~~~~-----~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~ 126 (431)
T TIGR01788 52 WMEPEARKLMDETINKNM-----IDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWR 126 (431)
T ss_pred CCCHHHHHHHHHHHhcCC-----CCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHH
Confidence 445668888888875321 111112234477777777777767877 3 46655 8999999876 43221
Q ss_pred ----CCC-----CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEc
Q 013521 156 ----GSN-----VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFC 221 (441)
Q Consensus 156 ----~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~ 221 (441)
..| ..|++..-.|+++...++.+| +++..+|++++ +...|++ + .+++.+|.++
T Consensus 127 ~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg------------~~v~~i~~d~~-~~~vd~~~L~~~i~~~t~lV~~t 193 (431)
T TIGR01788 127 KRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFD------------VELREVPMDPG-RYVIDPEQVVEAVDENTIGVVCI 193 (431)
T ss_pred HHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcC------------ceeEEEecCCC-ceeeCHHHHHHHHhhCCeEEEEE
Confidence 112 368889999999999998888 58889999864 2222322 1 3567888888
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHc------CcEEEEcccccccc----cCCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKAN------GSIIVYDSAYAAYI----TDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~~~~~~----~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
..+|.||.+.| +++|+++|+++ |+++.+|.+|+.+. ....+..+ . ......+.-|.+|+.. .
T Consensus 194 ~g~t~tG~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~---~-~~~~DSis~s~HK~~~-~ 265 (431)
T TIGR01788 194 LGTTYTGEYED---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDF---R-LPRVKSINVSGHKYGL-V 265 (431)
T ss_pred eCCCCCcccCC---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhc---C-CCCceEEEECchhccC-C
Confidence 89999999999 88888999999 99999999999533 22212211 1 1233467788999862 4
Q ss_pred cceeEEEEeeccccccCCchhHHHHHH---HHhh----hcCCCcHHH-H-HHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNR---IVCT----CFNGASNIV-Q-AGGLACLSPDGFQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~-~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 362 (441)
...+|.+++.++... ...+.. +... .....+... . .+.-..+...+...+++..++..+..+++.
T Consensus 266 P~g~G~l~~r~~~~l------~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~ 339 (431)
T TIGR01788 266 YPGVGWVIWRDEEAL------PEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLA 339 (431)
T ss_pred CCCcEEEEEeChHHc------chhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 445898888765210 011100 0000 001111111 1 111112222233556788888889999999
Q ss_pred HHHHhC-CCeeeCC-CCceEEEEEcCC-----CChHHHHHHHHHhcCeEEeCCCCc-CCCCCCeEEEEee--cCHHHHHH
Q 013521 363 DAFQSL-GLKVNGG-KNAPYVWVQFPG-----SSSWDVFAEILEKTHILTIPGSGF-GPGGNEHIRVSAF--GHREYISE 432 (441)
Q Consensus 363 ~~L~~~-g~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~pg~~f-~~~~~~~iRls~~--~~~~~~~~ 432 (441)
+.|++. ++++..+ +....+.+++++ .+..++.+.|. +.|+.+..-..- ...+..++|+++. .+++.+++
T Consensus 340 ~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~-~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~ 418 (431)
T TIGR01788 340 EEIAKLGPFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLR-ERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAEL 418 (431)
T ss_pred HHHHhCCCEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHH-HCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHH
Confidence 999988 5888765 456677788763 23445656555 559875321110 1123457899973 36788888
Q ss_pred HHHHHHhh
Q 013521 433 ACRRLKNF 440 (441)
Q Consensus 433 ~l~~l~~~ 440 (441)
+++.|+++
T Consensus 419 ~~~~~~~~ 426 (431)
T TIGR01788 419 LIEDIEAA 426 (431)
T ss_pred HHHHHHHH
Confidence 88888765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-14 Score=138.90 Aligned_cols=217 Identities=16% Similarity=0.183 Sum_probs=136.4
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH----HHHhccccccccccC
Q 013521 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT----SVIVGQAGKFLKETG 189 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~~~ 189 (441)
-...+++.+|++. +. .+.|++++|+ +|+.+ +..++++||+|+++...|.+.... +...|
T Consensus 70 t~~~le~~la~l~----g~-~~~v~fsSG~-~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~G---------- 133 (437)
T PRK05613 70 TVEALENRIASLE----GG-VHAVAFASGQ-AAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLG---------- 133 (437)
T ss_pred HHHHHHHHHHHHh----CC-CeEEEeCCHH-HHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcC----------
Confidence 4567788888875 54 3567777777 66655 777889999999999999887433 24445
Q ss_pred ccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCc
Q 013521 190 KYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS 267 (441)
Q Consensus 190 ~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~ 267 (441)
+++++++ ++. + ..+++. .+++++|++.+|.||+|.+.+ +++|+++|+++|+++|+|.+++.... ..+
T Consensus 134 --i~v~~vd-~~~-d-~e~l~~~l~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~---~~p 202 (437)
T PRK05613 134 --IEVTFVE-NPD-D-PESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL---VRP 202 (437)
T ss_pred --eEEEEEC-CCC-C-HHHHHHhCCccCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc---cCh
Confidence 4788876 221 1 111221 367899988899999999999 88999999999999999999863211 111
Q ss_pred ccccCCCcceeEEEecCCcccCCccceeEEEEe-ecccccc-----------------CCc--------h---hHHHHHH
Q 013521 268 IYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV-PEELRYS-----------------NGY--------P---VIKDFNR 318 (441)
Q Consensus 268 ~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~-~~~~~~~-----------------~~~--------~---~~~~~~~ 318 (441)
+ .+ +..+++.|++|.++..|--+|-+++ +.+.... ... . ..+....
T Consensus 203 ~-~~----GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (437)
T PRK05613 203 L-EL----GADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAG 277 (437)
T ss_pred H-Hh----CCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHH
Confidence 1 12 2349999999999755555554444 3221000 000 0 0001111
Q ss_pred HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 319 IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 319 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
.........+++... ++. .+.+.+.-+.++..++...+.+.|+++
T Consensus 278 ~~~~~G~~~~p~~a~----l~~-rgl~TL~lR~~~~~~nA~~lA~~L~~h 322 (437)
T PRK05613 278 LLRDTGATLSPFNAW----VTA-QGLDTLSLRLERHNENAIKVAEFLNNH 322 (437)
T ss_pred HHHhcCCCCCHHHHH----HHH-cccCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 222223334444422 221 445556777788889999999999987
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-14 Score=134.55 Aligned_cols=336 Identities=11% Similarity=0.167 Sum_probs=199.0
Q ss_pred CCCCCeEEeCCCCCCC---CCcHHHHHHHHHHHhhccCCCCCCCCCC-CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCc
Q 013521 69 HPDARLIRLGIGDTTQ---PIPDIITSAMAEHAFALSTVKGYKGYGA-EQGNMALRTAIADKFYKDMGIEGDEIFISDGA 144 (441)
Q Consensus 69 ~~~~~~i~l~~g~~~~---~~~~~~~~al~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~ 144 (441)
..++..||+..+..+. ..+|.+.+|+++.+.+ + ..|+. .....++-+.|.+. ++ ..|.|-++|.+
T Consensus 50 vDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~-----G-~~fg~Pte~Ei~~Aell~~~----~p-~~e~vrfvnSG 118 (432)
T COG0001 50 VDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLER-----G-LSFGAPTELEVELAELLIER----VP-SIEKVRFVNSG 118 (432)
T ss_pred CCCCEeeehhccCcccccCCCCHHHHHHHHHHHHh-----c-CCCCCCCHHHHHHHHHHHHh----cC-cccEEEEecch
Confidence 4567889988776432 3678899999999874 2 24543 33444444444443 33 34899999999
Q ss_pred HHHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHhccccc----------cccccCccceeEEeecCCCCCccCCCCC
Q 013521 145 QSDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGK----------FLKETGKYRNIVYMNCRPENNFFPDLST 211 (441)
Q Consensus 145 ~~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~----------~~~~~~~~~~v~~v~~~~~~~~~~~~~~ 211 (441)
|+|... + .+-+...|+|+..+-+|++....+..-...|. +..... ..+..+|.++.+.+...++.
T Consensus 119 TEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a--~~ti~~~yND~~al~~~~~~ 196 (432)
T COG0001 119 TEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVA--KHTLVLPYNDLEALEEAFEE 196 (432)
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhh--ccEEEecCCCHHHHHHHHHH
Confidence 999664 3 33445668999999999997666544211111 000000 12233333221111111112
Q ss_pred C-CCccEEEEcCC--CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccC-CCCCcccccCCCcceeEEEecCCc
Q 013521 212 T-SRTDIIFFCSP--NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-PSPRSIYEIPGAREVAIEISSFSK 286 (441)
Q Consensus 212 ~-~~~~~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~-~~~~~~~~~~~~~~~~i~i~S~SK 286 (441)
. ++..+|++ .| .| -|.+ -.++.+++|.++|++||+++|.||+...|... +.......+ .|| +.+|.|
T Consensus 197 ~g~~IAaVIv-EPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi--~PD----lttlGK 268 (432)
T COG0001 197 YGDDIAAVIV-EPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGV--EPD----LTTLGK 268 (432)
T ss_pred cCCcEEEEEe-ccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCc--Ccc----hhhhhh
Confidence 2 45666554 55 66 5654 46678999999999999999999999877654 223334333 244 667999
Q ss_pred ccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH----
Q 013521 287 FAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV---- 362 (441)
Q Consensus 287 ~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~---- 362 (441)
.+| .|+.+|.+.++.+++.. ......+....+.+.++++..|..+.++.-... +...+++.+..+.|.
T Consensus 269 iIG-GGlP~ga~gGr~eiM~~-----~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~--~~~y~~l~~~~~~L~~gl~ 340 (432)
T COG0001 269 IIG-GGLPIGAFGGRAEIMEQ-----LAPLGPVYQAGTLSGNPLAMAAGLATLEELMTE--EGVYERLDALGERLAEGLR 340 (432)
T ss_pred hhc-CCcceeeeccHHHHHhh-----hCCCCCccccCCCCCcHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHH
Confidence 998 99999999999888522 111222333444557788888888777621110 113344444444444
Q ss_pred HHHHhCCCeeeCCC-CceE-EEEEc-CCC--------C---hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHH
Q 013521 363 DAFQSLGLKVNGGK-NAPY-VWVQF-PGS--------S---SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHRE 428 (441)
Q Consensus 363 ~~L~~~g~~~~~~~-~~~~-~~~~~-~~~--------~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 428 (441)
+.++++|+.+.... +++| +++.- +.. + -..++..++++ ||++.|+.. +. .=+|..++++
T Consensus 341 ~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps~~-----ea-~flS~ahte~ 413 (432)
T COG0001 341 AAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPSQF-----EA-GFLSTAHTEE 413 (432)
T ss_pred HHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCccc-----cc-eeeecccCHH
Confidence 44445577664332 4444 22221 110 1 22455666665 999998641 11 2257778999
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++.++++.++
T Consensus 414 di~~~~~a~~~~ 425 (432)
T COG0001 414 DIDRTLEAADEA 425 (432)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-13 Score=133.72 Aligned_cols=337 Identities=12% Similarity=0.105 Sum_probs=196.7
Q ss_pred CCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcH
Q 013521 70 PDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~ 145 (441)
.++.++|+..|-. .+ ..+|.+.+++.+.+.+... .....|. .+....+|+.+....+-. .+.++++++++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~~-----~~~~~~lAe~L~~~~p~~~~~~v~f~~SGs 125 (441)
T PRK05769 52 DGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLH-YSLTDFY-----YEPAVELAERLVEIAPGGFEKKVFFTNSGT 125 (441)
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccC-ccCcccC-----CHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence 4567888876642 22 3578899999998875321 0111121 234455566654322321 36999999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHh-cccc----ccccccCccceeEEeecCCCCC--cc---C-----
Q 013521 146 SDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAG----KFLKETGKYRNIVYMNCRPENN--FF---P----- 207 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~----~~~~~~~~~~~v~~v~~~~~~~--~~---~----- 207 (441)
+|... + .......++|+...-+|++....+... +... .+.+.. ..+..++...... +. +
T Consensus 126 EA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (441)
T PRK05769 126 ESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLM---PGVIHVPYPNPYRNPWGIENPEECGN 202 (441)
T ss_pred HHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCC---CCeEEeCCCccccccccCCchHHHHH
Confidence 99886 4 222334568888899999976444332 2110 010100 1233333311000 00 0
Q ss_pred ----CCC--------CCCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC
Q 013521 208 ----DLS--------TTSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG 273 (441)
Q Consensus 208 ----~~~--------~~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~ 273 (441)
.++ ...++.+|+ ..| +.-.|.. .+.+.+++|.++|++||+++|.||++..|...+.......+.-
T Consensus 203 ~~~~~le~~~~~~~~~~~~iaavi-~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv 281 (441)
T PRK05769 203 AVLDFIEDYLFKKLVPPEEVAAII-VEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGV 281 (441)
T ss_pred HHHHHHHHHHHhhccCCCceEEEE-ECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCC
Confidence 011 123455544 466 5556765 4688999999999999999999999987654443222222221
Q ss_pred CcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013521 274 AREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDY 353 (441)
Q Consensus 274 ~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 353 (441)
.+| ++ +|||.++ .|+++|++++++++. ........ ...+.+++++.++.+.|+. .+. ...++
T Consensus 282 ~pD--iv--t~~K~l~-~G~p~gav~~~~~i~--------~~~~~~~~-~T~~g~p~~~aaa~a~L~~--l~~--~~~~~ 343 (441)
T PRK05769 282 EPD--II--TLAKAIA-GGLPLGAVIGRAELM--------FLPPGSHA-NTFGGNPVAAAAALATLEE--LEE--GLLEN 343 (441)
T ss_pred CCC--EE--EEccccc-CCcccEEEEEehhhh--------hcCCCCCC-CCCCcCHHHHHHHHHHHHH--HHH--HHHHH
Confidence 244 22 5899998 899999999988773 11111122 2334578888888888752 121 55666
Q ss_pred HHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCCC-------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE
Q 013521 354 YKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGS-------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS 422 (441)
Q Consensus 354 ~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls 422 (441)
.+++-++|.+.|+++ ++......-|.++-+.+... ....+...+++ +||.+.|. +.+.+|++
T Consensus 344 ~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~Gil~~~~------~~~~lr~~ 416 (441)
T PRK05769 344 AQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFK-RGLLLLGA------GKSAIRII 416 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHh-CCcEEecC------CCCEEEEe
Confidence 777777777777654 22111112356666666321 11234445554 59998763 23679998
Q ss_pred e--ecCHHHHHHHHHHHHhhC
Q 013521 423 A--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 423 ~--~~~~~~~~~~l~~l~~~l 441 (441)
. ..+++++++++++|.+++
T Consensus 417 p~l~~t~~~id~~~~~l~~~l 437 (441)
T PRK05769 417 PPLIITEEEADIGLEILEEAI 437 (441)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 4 458999999999998763
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-13 Score=129.63 Aligned_cols=297 Identities=12% Similarity=0.094 Sum_probs=183.2
Q ss_pred CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHH-HhcCCCCEEEEeCCCchhhHhH-HHHhcccccccc
Q 013521 109 GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQ-MLLGSNVTVAVQDPSFPAYIDT-SVIVGQAGKFLK 186 (441)
Q Consensus 109 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~-~l~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~~~ 186 (441)
.|..++...+|.+++++++ |. +.++.|++++.|++++. ..++|||+| +.++|..-... +...|
T Consensus 66 ~yag~~s~~~lE~~va~~~----G~--~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~G------- 130 (450)
T TIGR02618 66 AYAGSRNFYHLERTVRELY----GF--KYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKNG------- 130 (450)
T ss_pred hhcCCCcHHHHHHHHHHHH----CC--CeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhCC-------
Confidence 4877888999999999996 54 57999999999998754 457999987 66777554443 56666
Q ss_pred ccCccceeEEeecCC--------CCCccCCCCC-----C----CCccEEEEcCCCCc-cccCCCHHHHHHHHHHHHHcCc
Q 013521 187 ETGKYRNIVYMNCRP--------ENNFFPDLST-----T----SRTDIIFFCSPNNP-TGHAATWQQLKKLVEFAKANGS 248 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~--------~~~~~~~~~~-----~----~~~~~v~i~~p~NP-tG~~~~~~~~~~i~~~a~~~~~ 248 (441)
..++-++.++ ......|+++ . .++++|.+.+++|- .|..+|.+++++|.++|++||+
T Consensus 131 -----av~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl 205 (450)
T TIGR02618 131 -----ATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGI 205 (450)
T ss_pred -----eEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCC
Confidence 2333332221 1111223221 1 24557788888874 5899999999999999999999
Q ss_pred EEEEcccccc-c-cc----C--CCCCccc----ccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHH
Q 013521 249 IIVYDSAYAA-Y-IT----D--PSPRSIY----EIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDF 316 (441)
Q Consensus 249 ~ii~De~~~~-~-~~----~--~~~~~~~----~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~ 316 (441)
.||+|.+... . .+ + -...++. ++....| .+..|..|.++.+- -|+++.+++.+ .++.
T Consensus 206 ~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD--~~~~S~~Kd~~~~~--GG~l~~~d~~l-------~~k~ 274 (450)
T TIGR02618 206 KVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYAD--GCTMSGKKDCLVNI--GGFLCMNDDEM-------FQSA 274 (450)
T ss_pred EEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCc--EEEEeeccCCCCCC--ceEEEeCCHHH-------HHHH
Confidence 9999998764 1 11 0 1123442 2211122 58889999887661 27777566554 4444
Q ss_pred HHHHhhh-cC----CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC----
Q 013521 317 NRIVCTC-FN----GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG---- 387 (441)
Q Consensus 317 ~~~~~~~-~~----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---- 387 (441)
+...... .+ +.+.-...+..-.|.+. .+ +...++-..+.++|.+.|.+.|+.+..|.+|+.++++...
T Consensus 275 r~~~~~~eG~~tyGgla~r~~~ala~gL~e~-~~--~~y~~~r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph 351 (450)
T TIGR02618 275 KELVVVFEGMPSYGGLAGRDMEAMAIGIREA-VD--YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPH 351 (450)
T ss_pred HHHhhhcCCccccCchhhhhHHHHHHHHHHh-hh--HHHHHHHHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCC
Confidence 4432211 11 11111222222223211 11 1233333345788999999999998777889999998631
Q ss_pred -----CChHHHHHHHHHhcCeEEeC-CCCc-C--CCC-------CCeEEEEee---cCHHHHHHHHHHHHh
Q 013521 388 -----SSSWDVFAEILEKTHILTIP-GSGF-G--PGG-------NEHIRVSAF---GHREYISEACRRLKN 439 (441)
Q Consensus 388 -----~~~~~~~~~ll~~~gi~v~p-g~~f-~--~~~-------~~~iRls~~---~~~~~~~~~l~~l~~ 439 (441)
.....++.+|..+.||--.- |+.. + +.+ -..+|+++- -+.+.++...++|..
T Consensus 352 ~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~ 422 (450)
T TIGR02618 352 IPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIK 422 (450)
T ss_pred CChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHH
Confidence 24567788888888886543 3322 1 111 257999972 266777777776654
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.4e-13 Score=126.76 Aligned_cols=328 Identities=12% Similarity=0.114 Sum_probs=200.5
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccC-CC---CCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC-cE-EEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALST-VK---GYKGYGAEQGNMALRTAIADKFYKDMGIEGD-EI-FISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~-~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~I-~~t~G~~~ 146 (441)
.+++|+-|. ...|+.|++++.+.+.++.. .- .+.+. +.-..++-+.+.+.+.+.++++.+ +| ++..|++.
T Consensus 7 ~~~~f~pGP--~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHR--s~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~ 82 (365)
T PLN02452 7 RVFNFSAGP--ATLPANVLAKAQAELYNWEGSGMSVMEMSHR--GKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGAST 82 (365)
T ss_pred ceEeeeCCC--CCCCHHHHHHHHHHHhcccccCccccccCCC--chHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHH
Confidence 467887774 45789999999987655431 01 12233 334455666666666665676432 44 55577788
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCc--cCC---CCCCCCccEE
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF--FPD---LSTTSRTDII 218 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~--~~~---~~~~~~~~~v 218 (441)
+++. ++.++.+||++++..-++++- ...++.+|. ..+...... +++ .++ ++..++.+.|
T Consensus 83 ~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v 149 (365)
T PLN02452 83 QFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCK------------TNVIASGKD-EKYTKIPSVSEWELTPDAKFV 149 (365)
T ss_pred HHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCC------------CcEEEecCC-CCCCCCCChHHcCCCCCCcEE
Confidence 8887 688999999999888888773 444555552 122221111 121 222 2233578888
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
.+|+-...||+.+.. +.++. ++++|+|.+.+-. ..|..+..+ + +...|..|.+|.+| +|.+
T Consensus 150 ~~~hnETstGv~~~~--~~~i~------~~~lvVDa~Ss~g---~~pidv~~~----~--v~~~saqK~lGP~G--l~~v 210 (365)
T PLN02452 150 HICANETIHGVEFKD--YPDVG------NVPLVADMSSNFL---SKPVDVSKY----G--VIYAGAQKNVGPSG--VTIV 210 (365)
T ss_pred EECCCCCCCcEecCc--ccccC------CCeEEEECCcccc---CcccCHHHc----C--EEEEecccccCCCC--eEEE
Confidence 888888899996431 44443 3899999987732 223333332 2 33469999999887 8899
Q ss_pred EeeccccccCCch--hHHHHHHH--HhhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 013521 299 VVPEELRYSNGYP--VIKDFNRI--VCTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSL-GLKV 372 (441)
Q Consensus 299 ~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 372 (441)
+++++++...... ..-.+... ....+++++.....+..++++.-..+ .++.+.++.+++.+++++.|++. |+..
T Consensus 211 ~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~ 290 (365)
T PLN02452 211 IIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYV 290 (365)
T ss_pred EEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 9998886331111 01111111 11222345555544444444311111 35888999999999999999986 6621
Q ss_pred e-CC---CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 373 N-GG---KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 373 ~-~~---~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
. .. ...+.+.+.+++....+.+.+.++++|+...+|..- -+.+|+|+++ +.++++.+++.|+++
T Consensus 291 ~~~~~~~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~r~----~gg~R~s~yna~~~~~v~~L~~~m~~f 360 (365)
T PLN02452 291 CPVEKSVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKGHRS----VGGMRASIYNAMPLAGVEKLVAFMKDF 360 (365)
T ss_pred CCCChHHhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCCccc----cCceEEECcCCCCHHHHHHHHHHHHHH
Confidence 1 11 244577888875434444455566679999999753 1239999754 889999999999875
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-13 Score=129.62 Aligned_cols=315 Identities=14% Similarity=0.092 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHh-hccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcE--EEcCCcHHHHHH-HHHhc--CCCCEE
Q 013521 88 DIITSAMAEHAF-ALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEI--FISDGAQSDISR-LQMLL--GSNVTV 161 (441)
Q Consensus 88 ~~~~~al~~~~~-~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I--~~t~G~~~al~~-l~~l~--~~gd~V 161 (441)
...++++.+.+. .+++....+.| .....++.+.+.+|+.+.++.+++++ ++|+|+|++... +.... .++..|
T Consensus 37 ~~~~~~~~~~~~~~~gnP~s~~~~--g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~v 114 (374)
T PLN03032 37 YGELSQLMKYSINNLGDPFIESNY--GVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGIL 114 (374)
T ss_pred hHHHHHHHHhcccCCCCCcccCCC--CccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEE
Confidence 345666766654 34442333333 23456777777777777678888887 999999999875 43322 355689
Q ss_pred EEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC-----CCCccEEEEcCCCCccccCCCHHH
Q 013521 162 AVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST-----TSRTDIIFFCSPNNPTGHAATWQQ 235 (441)
Q Consensus 162 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~-----~~~~~~v~i~~p~NPtG~~~~~~~ 235 (441)
+++.-.|.++...++.+| ..+..+|++.++..+++ +++ ..++.+|+++..+|+||.+-|
T Consensus 115 i~s~~~H~Sv~kaa~~lg------------~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp--- 179 (374)
T PLN03032 115 YASRESHYSVFKAARMYR------------MEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD--- 179 (374)
T ss_pred EeCCCceeHHHHHHHHcC------------CCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---
Confidence 999999999999999998 46778888776544333 211 124667777778999999988
Q ss_pred HHHHHHHHHHcC-----cEEEEcccccccccC--CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccC
Q 013521 236 LKKLVEFAKANG-----SIIVYDSAYAAYITD--PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN 308 (441)
Q Consensus 236 ~~~i~~~a~~~~-----~~ii~De~~~~~~~~--~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~ 308 (441)
+++|+++|+++| +++.+|.+++.+... .. .+...+. .....+.-|.+|..+ ....+|.++.+++.+..-
T Consensus 180 i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~-~~~~~~~--~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~~~~ 255 (374)
T PLN03032 180 LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSR-APEVTFR--KPIGSVSVSGHKFLG-CPMPCGVALTRKKHVKAL 255 (374)
T ss_pred HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCC-CcccCCC--cCCcEEEECcccccC-CCcCeEEEEEEchhhHhh
Confidence 788888899996 589999999753221 11 1111121 123467778999987 566799999987664110
Q ss_pred CchhHHHHHHHHhhhcCCC-cHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC
Q 013521 309 GYPVIKDFNRIVCTCFNGA-SNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG 387 (441)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 387 (441)
. .....+.. ...+..+. +.....++-+.|...+.+.+.++.+..-+..+++.+.|++.+++....+..+.+.++-+.
T Consensus 256 ~-~~~~Yl~~-~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~~V~f~~~~ 333 (374)
T PLN03032 256 S-QNVEYLNS-RDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNELSSTVVFERPM 333 (374)
T ss_pred c-cCCcccCC-CCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECCCceEEEEcCCC
Confidence 0 00000000 00011111 122233333444445566778888899999999999999888887655566666666552
Q ss_pred CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 388 SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 388 ~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
... +. + |-.+.+ ..+.+|+++. .+++.++++++-|++.
T Consensus 334 --~~~----~~-~-~w~l~~-------~~~~~hi~vm~~~~~~~id~fi~dl~~~ 373 (374)
T PLN03032 334 --DEA----FI-K-KWQLAC-------EGDIAHVVVMPNVTVEKLDEFVEELVEV 373 (374)
T ss_pred --cHh----Hh-h-eeeecc-------cCCEEEEEECCCCCHHHHHHHHHHHhcc
Confidence 111 22 2 444443 1247999973 3678899999988763
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.7e-13 Score=130.52 Aligned_cols=315 Identities=16% Similarity=0.147 Sum_probs=179.8
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCC-CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEE
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYG-AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAV 163 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv 163 (441)
+.++.+.+++.+.+..+.+.......+ ...-...+++.+|++. |. +..++++++++|+.++...+.+||+|++
T Consensus 97 ~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~----Ga--e~a~vv~sgtaAl~l~l~~l~~GdeVIv 170 (464)
T PRK04311 97 LLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALT----GA--EDALVVNNNAAAVLLALNALAAGKEVIV 170 (464)
T ss_pred CCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHh----CC--CeEEEECCHHHHHHHHHHHhCCCCEEEE
Confidence 467899999999887543211000000 0112357788888875 54 4577788888999875566799999999
Q ss_pred eCCCchh------hHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCc--cc--cCC
Q 013521 164 QDPSFPA------YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNP--TG--HAA 231 (441)
Q Consensus 164 ~~p~y~~------~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NP--tG--~~~ 231 (441)
....+.. +.......| .+++.++.+.... ..+++. .+++++|++.+++|| +| ...
T Consensus 171 s~~e~~~~ggs~~i~~~~~~~G------------~~l~~v~~~~~t~-~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~ 237 (464)
T PRK04311 171 SRGELVEIGGAFRIPDVMRQAG------------ARLVEVGTTNRTH-LRDYEQAINENTALLLKVHTSNYRIEGFTKEV 237 (464)
T ss_pred cchhhhhcCcchhhHHHHHHCC------------cEEEEECCCCCCC-HHHHHHhcCccCeEEEEEcCCCccccccCCcC
Confidence 8765431 122344456 4777776543211 122222 468999999999998 34 445
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccc----cC--CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYI----TD--PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~----~~--~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~ 305 (441)
+ +++|+++|++||+++|+|...+.+. +. ..| .+...- ..+..+++.|.+|.+| |...|+++++++++
T Consensus 238 d---l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p-~~~~~l-~~GaDiv~fSg~K~Lg--Gp~~G~i~g~~~li 310 (464)
T PRK04311 238 S---LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEP-TVQELL-AAGVDLVTFSGDKLLG--GPQAGIIVGKKELI 310 (464)
T ss_pred C---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCC-chhhHH-hcCCcEEEecCccccc--CCceEEEEEcHHHH
Confidence 6 9999999999999999999654321 11 112 222210 1234599999999986 34699999988774
Q ss_pred ccCCchhHHHHHHH---HhhhcCCCcHHHHHHHHHhcCCCc--------HHHHHHHHHHHHHHHHHHHHHHHhC---CC-
Q 013521 306 YSNGYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDG--------FQALRTVIDYYKENAKIIVDAFQSL---GL- 370 (441)
Q Consensus 306 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~~~~~~~l~~~L~~~---g~- 370 (441)
+++... +.............+.+..+.+.. .+-+....+..+++.+.+.+.|+.+ ++
T Consensus 311 --------~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~ 382 (464)
T PRK04311 311 --------ARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFA 382 (464)
T ss_pred --------HHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCee
Confidence 222210 000001111112222222221111 1223444567777888888888775 22
Q ss_pred -eeeCC----CC---------ceEEEEEcCCCChHHHHHHHHHhcC--eEEeCCCCcCCCCCCeEEEEee-cCHHHHHHH
Q 013521 371 -KVNGG----KN---------APYVWVQFPGSSSWDVFAEILEKTH--ILTIPGSGFGPGGNEHIRVSAF-GHREYISEA 433 (441)
Q Consensus 371 -~~~~~----~~---------~~~~~~~~~~~~~~~~~~~ll~~~g--i~v~pg~~f~~~~~~~iRls~~-~~~~~~~~~ 433 (441)
++... .+ +.-+.++..+....++ ...|++.. |..+ ..++.+.+.+- -.+++++.+
T Consensus 383 ~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l-~~~lr~~~~~i~~r-------~~~~~~~ld~r~~~~~~~~~~ 454 (464)
T PRK04311 383 VEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEAL-AARLRLLPPPVIGR-------IEDGRLLLDLRTLEEEDEERL 454 (464)
T ss_pred EEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHH-HHHHhcCCCCEEEE-------EECCEEEEEeCcCCHHHHHHH
Confidence 33221 01 1123333223334444 44455533 3332 23566777763 378899999
Q ss_pred HHHHHhhC
Q 013521 434 CRRLKNFL 441 (441)
Q Consensus 434 l~~l~~~l 441 (441)
+++|++++
T Consensus 455 ~~~~~~~~ 462 (464)
T PRK04311 455 AAALLEAL 462 (464)
T ss_pred HHHHHHHh
Confidence 99988763
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-13 Score=139.81 Aligned_cols=341 Identities=16% Similarity=0.145 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC--cCc----HHHHHHHHHHHh
Q 013521 55 FPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE--QGN----MALRTAIADKFY 128 (441)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~--~g~----~~lr~~ia~~l~ 128 (441)
..++.+.......+.. .-...++.|.++.-.|+.+.+++.+...-+ ..+.-|++. +|. .+++..||+.
T Consensus 87 E~e~~~~~~~la~kN~-~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~---TaytPYqaEisQG~lqal~~~Qt~ia~L-- 160 (993)
T PLN02414 87 ESQMLEHMKSLASKNK-VFKSYIGMGYYNTHVPPVILRNILENPGWY---TQYTPYQAEIAQGRLESLLNYQTMITDL-- 160 (993)
T ss_pred HHHHHHHHHHHHhcCC-ccccccCCCCCCccCCHHHHHHHHhChHHH---hhcCCCchHHHHHHHHHHHHHHHHHHHH--
Confidence 3444444444443322 122345666666667788878887754321 233445543 453 3344555554
Q ss_pred hhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCC--CEEEEeCCCchhhHhHHHHhcc-ccccccccCccceeEEeecCCCC
Q 013521 129 KDMGIEGDEIFISDGAQSDISR-LQML-LGSN--VTVAVQDPSFPAYIDTSVIVGQ-AGKFLKETGKYRNIVYMNCRPEN 203 (441)
Q Consensus 129 ~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~g--d~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~v~~v~~~~~~ 203 (441)
.|.+++++.++.|++++.+. ++++ +.+| |+|++.+-.||.....++.... .| ++++.++.+..
T Consensus 161 --tG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~G---------ieV~~v~~~~~- 228 (993)
T PLN02414 161 --TGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLG---------LEVVVADEKDF- 228 (993)
T ss_pred --hCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcC---------CEEEEecchhh-
Confidence 58999999999999999997 4444 4544 7899999999998777755422 22 47888876431
Q ss_pred CccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEec
Q 013521 204 NFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISS 283 (441)
Q Consensus 204 ~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 283 (441)
+ .. ...+-.+++.+|++ +|.+.+ +++|+++|+++|+++++ .++.. .... -.+..++ +.+|++++
T Consensus 229 ~----~~-~~~v~~vlvq~P~~-~G~v~d---v~~I~~~ah~~GaL~iV-aad~l-al~~-l~~pge~----GADi~vgs 292 (993)
T PLN02414 229 D----YS-SGDVCGVLVQYPAT-DGEVLD---YAEFVKNAHANGVKVVM-ATDLL-ALTM-LKPPGEW----GADIVVGS 292 (993)
T ss_pred c----cc-cCceEEEEEecCCC-CeEEcC---HHHHHHHHHHcCCEEEE-EECHH-HhcC-CCCHhhc----cCcEEEEC
Confidence 1 01 12343445545544 999988 88999999999999999 44431 1111 0112222 34589999
Q ss_pred CCccc---CCccceeEEEEeeccccccCCc-hh-------------------HHHHHHHHhhhcCCCcHHHHHHHHHhc-
Q 013521 284 FSKFA---GFTGVRLGWTVVPEELRYSNGY-PV-------------------IKDFNRIVCTCFNGASNIVQAGGLACL- 339 (441)
Q Consensus 284 ~SK~~---~~~G~r~G~l~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~l- 339 (441)
..|+. |..|.+.|++.+.+++... .+ .+ +.+-.+....+.+-.+..+..++++.+
T Consensus 293 gqKwg~P~G~GGP~aGflavr~~~~r~-~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y 371 (993)
T PLN02414 293 AQRFGVPMGYGGPHAAFLATSQEYKRL-MPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMY 371 (993)
T ss_pred CCccccCCCCCCCCeeEEEECHHHHhh-CCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHH
Confidence 99986 2245569999998876421 11 00 001001111111111111222223211
Q ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCe
Q 013521 340 -SPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEH 418 (441)
Q Consensus 340 -~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~ 418 (441)
.-.+...+++..++..++..++.+.|.+.|+++..++-..-+.++++ ...++.++|++ +||.++.-. .+.
T Consensus 372 ~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~~vt~~~~--~~~~v~~~L~~-~gI~l~~~~------~~~ 442 (993)
T PLN02414 372 AVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFDTVKVKCS--DADAIADAAAK-VGINLRVVD------ANT 442 (993)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcCeEEEecC--CHHHHHHHHHH-CCCeeEEec------CCe
Confidence 11111335777888889999999999888877754322223555654 44667777665 599776421 457
Q ss_pred EEEEe--ecCHHHHHHHHHHHHh
Q 013521 419 IRVSA--FGHREYISEACRRLKN 439 (441)
Q Consensus 419 iRls~--~~~~~~~~~~l~~l~~ 439 (441)
+|+|+ .++++|++.+++.|..
T Consensus 443 lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 443 VTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred EEEEeeccCCHHHHHHHHHHHcc
Confidence 99997 5689999999999863
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-12 Score=130.25 Aligned_cols=343 Identities=13% Similarity=0.082 Sum_probs=191.7
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..|- ..+ ..+|.+.+++.+.+.+.... ...|. . +....+|+.+.+..+. .+.+++++++++
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~--~~~~~-~----~~~~~lae~l~~~~~~-~~~v~f~~sGse 116 (451)
T PRK07678 45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYF--PLTQS-H----EPAIKLAEKLNEWLGG-EYVIFFSNSGSE 116 (451)
T ss_pred CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCcc--ccccC-C----HHHHHHHHHHHHhCCC-CCEEEEeCCcHH
Confidence 456788887663 222 36789999999988754210 11221 2 2233444444332332 358999999999
Q ss_pred HHHH-HH--H-hc---C-CC-CEEEEeCCCchhhHhHHHHhccccc----cccccCccceeEEeecCCCCCcc-------
Q 013521 147 DISR-LQ--M-LL---G-SN-VTVAVQDPSFPAYIDTSVIVGQAGK----FLKETGKYRNIVYMNCRPENNFF------- 206 (441)
Q Consensus 147 al~~-l~--~-l~---~-~g-d~Vlv~~p~y~~~~~~~~~~g~~~~----~~~~~~~~~~v~~v~~~~~~~~~------- 206 (441)
|... +. . .. + +| .+|+...-+|++....+........ +.+.. ..+..++........
T Consensus 117 A~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 193 (451)
T PRK07678 117 ANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLA---PGFLHVPPPDCYRMPGIESEDI 193 (451)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCC---CCCEEeCCCccccccccCChHH
Confidence 9885 42 1 22 1 23 5788899999996544433221100 00000 122223221100000
Q ss_pred --C----CCC-----C-CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccC
Q 013521 207 --P----DLS-----T-TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIP 272 (441)
Q Consensus 207 --~----~~~-----~-~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~ 272 (441)
. .++ . .+++.+|++ .| +.-.|.+ .|++.++++.++|++||+++|.||++..|...+.......+.
T Consensus 194 ~~~~~~~~l~~~~~~~~~~~iAAvi~-EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~g 272 (451)
T PRK07678 194 YDLECVKEIDRVMTWELSETIAAVIM-EPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYG 272 (451)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEE-ccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcC
Confidence 0 011 1 234556554 66 4445655 588899999999999999999999998775443222222232
Q ss_pred CCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH------HHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 273 GAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR------IVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 273 ~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
-.|| +-+++|.+| .| +.+|.+++++++. +.+.. +....+++.++++..++.+.|+.-..
T Consensus 273 v~PD----ivt~gK~lg-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~- 338 (451)
T PRK07678 273 VKPD----IITMAKGIT-SAYLPLSATAVKKEIY--------EAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN- 338 (451)
T ss_pred CCCC----EEEeecccc-cCCcceeEEEEcHHHH--------HHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHh-
Confidence 2355 336899998 77 6999999988873 33321 12234455788888888888762111
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hCCCeeeCCCCceEEEEEcCC-C------C---hHHHHHHHHHhcCeEEeCCCCc
Q 013521 346 ALRTVIDYYKENAKIIVDAFQ----SLGLKVNGGKNAPYVWVQFPG-S------S---SWDVFAEILEKTHILTIPGSGF 411 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~----~~g~~~~~~~~~~~~~~~~~~-~------~---~~~~~~~ll~~~gi~v~pg~~f 411 (441)
+.+.++.++.-+++.+.|+ ++++.......|.++-+.+.. . + ...+...+++ +||.+.+....
T Consensus 339 --~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~-~Gv~~~~~g~~ 415 (451)
T PRK07678 339 --ENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKE-KGLIIGKNGDT 415 (451)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHH-CCcEEeecCcc
Confidence 1233444444445544443 334322111245555566521 0 1 1234445554 59999763221
Q ss_pred CCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 412 GPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 412 ~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
.+...+.+||+- ..+++++++++++|.+++
T Consensus 416 v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l 447 (451)
T PRK07678 416 VAGYNNVLTLSPPLVISSEEIAFIVGTLKTAL 447 (451)
T ss_pred ccCCCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 122346799984 558999999999998764
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-12 Score=127.75 Aligned_cols=340 Identities=12% Similarity=0.088 Sum_probs=194.9
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..|. ..+ ..+|.+.+++.+.+.+... ....|.+. +.+..+|+.+.+..+...+.+.+++++++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~--~~~~~~~~----~~~~~lae~L~~~~p~~~~~v~f~~SGsE 124 (457)
T PRK05639 51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQH--SMIGYTHS----ERAIRVAEKLAEISPIENPKVLFGLSGSD 124 (457)
T ss_pred CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccc--cccCccCC----HHHHHHHHHHHhhCCCCcCEEEEeCchHH
Confidence 456788887764 222 3678899999998875321 11122222 23334444443323333368999999999
Q ss_pred HHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHh-ccc----cccccccCccceeEEeecCCCCC--c------cC---
Q 013521 147 DISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIV-GQA----GKFLKETGKYRNIVYMNCRPENN--F------FP--- 207 (441)
Q Consensus 147 al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~----~~~~~~~~~~~~v~~v~~~~~~~--~------~~--- 207 (441)
|... + .........|+....+|++....+..+ +.. ..+.+.. -.+..+|...... + .+
T Consensus 125 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~ 201 (457)
T PRK05639 125 AVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLM---PNVVWIPYPNPYRNPWGINGYEEPDEL 201 (457)
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCC---CCceEeCCCccccccccccccCCHHHH
Confidence 9886 4 223344567888999999965443332 210 0111100 1244444321100 0 00
Q ss_pred ------CCC--------CCCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc
Q 013521 208 ------DLS--------TTSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 208 ------~~~--------~~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
.++ ...++.++++ .| +...|.+ .|.+.+++|.++|++||+++|.||++..|...+.......+
T Consensus 202 ~~~~~~~le~~l~~~~~~~~~iAAvI~-EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~ 280 (457)
T PRK05639 202 INRFLDYLENYVFSHVVPPDEVAALFA-EPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWF 280 (457)
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhc
Confidence 011 1245556554 66 5556764 57899999999999999999999999865433321111122
Q ss_pred CCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHH
Q 013521 272 PGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVI 351 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 351 (441)
.-.+| |++ |+|.++ .|+.+|.+++++++. +.... ....+.+.+++...++.+.++.-.. +...
T Consensus 281 gv~PD--iv~--~gK~l~-gG~pi~av~~~~~i~--------~~~~~-~~~~T~~g~p~~~aaa~a~l~~l~~---~~l~ 343 (457)
T PRK05639 281 EVKPD--LII--FGKGVA-SGMGLSGVIGRKELM--------DLTSG-SALLTPAANPVISAAAEATLEIIEE---ENLL 343 (457)
T ss_pred CCCCC--EEE--echhhc-CCCcceeEEehHHHH--------hhcCC-CcccCCCcCHHHHHHHHHHHHHHHH---ccHH
Confidence 22344 333 899998 889999999988874 21111 1112334677777777777752111 2334
Q ss_pred HHHHHHHHHHHHHHHh----CCCeeeCCCCceEEEEEcCC-C---C---hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEE
Q 013521 352 DYYKENAKIIVDAFQS----LGLKVNGGKNAPYVWVQFPG-S---S---SWDVFAEILEKTHILTIPGSGFGPGGNEHIR 420 (441)
Q Consensus 352 ~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~~~-~---~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iR 420 (441)
++.++.-++|.+.|++ +++......-|.++-+.+.. . + ...+...+++ +|+.+.+.. ...+.+|
T Consensus 344 ~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~g----~~~~~lr 418 (457)
T PRK05639 344 KNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFE-LGLILPSYG----MFGNVIR 418 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHh-CCeEEeecC----CCCCEEE
Confidence 4444555666666655 33222111245666666521 1 1 2234455554 599997641 1246899
Q ss_pred EE--eecCHHHHHHHHHHHHhhC
Q 013521 421 VS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 421 ls--~~~~~~~~~~~l~~l~~~l 441 (441)
+. +..+++++++++++|.+++
T Consensus 419 ~~Ppl~it~~~id~~~~~l~~~l 441 (457)
T PRK05639 419 ITPPLVITKEIAEKGLEIMERAI 441 (457)
T ss_pred EeCCCccCHHHHHHHHHHHHHHH
Confidence 98 4568999999999998763
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-13 Score=132.54 Aligned_cols=338 Identities=12% Similarity=0.092 Sum_probs=187.8
Q ss_pred CCCCCeEEeCCCCCC--C-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH
Q 013521 69 HPDARLIRLGIGDTT--Q-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ 145 (441)
Q Consensus 69 ~~~~~~i~l~~g~~~--~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~ 145 (441)
..++..||+..|-.. + ..+|.+.+++.+.+.+.. .+.. ..++...+|+.+.+..+- .+.+.++++++
T Consensus 96 ~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~------~~~~---~~~~~~~lAe~l~~~~p~-~~~v~f~~SGs 165 (474)
T PLN02482 96 VDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGT------SFGA---PCLLENVLAEMVIDAVPS-VEMVRFVNSGT 165 (474)
T ss_pred CCCCEEEEecccccccccCCCCHHHHHHHHHHHhhCC------CCCC---CCHHHHHHHHHHHHhCCC-CCEEEEeCChH
Confidence 346778888766422 2 367899999999887521 1211 123455566666543332 57999999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHhcccccc----c-cccCc---cceeEEeecCCCCCccCCCCCC-C
Q 013521 146 SDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKF----L-KETGK---YRNIVYMNCRPENNFFPDLSTT-S 213 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----~-~~~~~---~~~v~~v~~~~~~~~~~~~~~~-~ 213 (441)
+|... + .......++|+...-+|++....+......+.. . ..... ...+..++.++.+.+...++.. .
T Consensus 166 EA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~ 245 (474)
T PLN02482 166 EACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKG 245 (474)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCC
Confidence 99886 3 223334568888899999965332211000000 0 00000 0012223322111110011111 3
Q ss_pred CccEEEEcCC-CCccccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 214 RTDIIFFCSP-NNPTGHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 214 ~~~~v~i~~p-~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
++.+|+ ..| +.-.|.+.+ ++.+++|.++|++||+++|.||++..| ..+.......+.-.+| +.+|+|.+| .
T Consensus 246 ~iAavI-~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PD----i~t~gK~lg-g 318 (474)
T PLN02482 246 EIAAVI-LEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPD----LTTLGKVIG-G 318 (474)
T ss_pred ceEEEE-ECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCC----EEEecchhh-C
Confidence 455544 556 555787655 788999999999999999999999766 3222111111222344 347899998 8
Q ss_pred cceeEEEEeeccccccCCchhHHHHHH---HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNR---IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
|+.+|.++++++++ +.+.. .....+.+.+++...++.+.|+.-.. +...++.+++-+++.+.|++.
T Consensus 319 G~Pigav~g~~ei~--------~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l 387 (474)
T PLN02482 319 GLPVGAYGGRREIM--------EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ---PGTYEYLDKITKKLIQGILEA 387 (474)
T ss_pred CCceEEEEEcHHHH--------HhhccCCCcccccCcchhHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHH
Confidence 99999999887773 33321 11122333577777777777652111 234455555555555555543
Q ss_pred ----CCeee-CCCCceE-EEEEcCC---------CC---hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHH
Q 013521 369 ----GLKVN-GGKNAPY-VWVQFPG---------SS---SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYI 430 (441)
Q Consensus 369 ----g~~~~-~~~~~~~-~~~~~~~---------~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~ 430 (441)
++.+. ....+++ +.+.-+. .+ ...+...+++ +||.+.|... . .++ +++..+++++
T Consensus 388 ~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~~~~~~~-~---~~~--psl~ht~~dI 460 (474)
T PLN02482 388 GKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLE-EGVYLAPSQF-E---AGF--TSLAHTEEDI 460 (474)
T ss_pred HHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHH-CCeEEeccCC-C---CCc--CCCCCCHHHH
Confidence 44433 2224433 2222111 01 1234555555 5999987421 1 111 5667799999
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
+++++++.+++
T Consensus 461 d~~l~al~~~l 471 (474)
T PLN02482 461 DFTIAAAERVL 471 (474)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-12 Score=124.62 Aligned_cols=293 Identities=12% Similarity=0.144 Sum_probs=179.3
Q ss_pred CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHH-HhcCCCCEEEEeCCCchhhHhH-HHHhcccccccc
Q 013521 109 GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQ-MLLGSNVTVAVQDPSFPAYIDT-SVIVGQAGKFLK 186 (441)
Q Consensus 109 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~-~l~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~~~ 186 (441)
.|..++...+|.+++++++ |. +.++.|+.++.|+.++. ..++|||.| +..+|..-... +...|
T Consensus 73 ~Yagd~s~~~LE~~vAe~l----G~--e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~G------- 137 (460)
T PRK13237 73 AYAGSRNFYHLEETVQEYY----GF--KHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNG------- 137 (460)
T ss_pred hhcCCCcHHHHHHHHHHHH----CC--CeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCC-------
Confidence 4877888999999999997 54 46999999999988753 347999975 44444443333 44455
Q ss_pred ccCccceeEEeecC-----------CCCCccCCCCC---------CCCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHH
Q 013521 187 ETGKYRNIVYMNCR-----------PENNFFPDLST---------TSRTDIIFFCSPNNPT-GHAATWQQLKKLVEFAKA 245 (441)
Q Consensus 187 ~~~~~~~v~~v~~~-----------~~~~~~~~~~~---------~~~~~~v~i~~p~NPt-G~~~~~~~~~~i~~~a~~ 245 (441)
.. ++++. +. .+..|+++ .++++++.+.+++|.. |+..|.+++++|.++|++
T Consensus 138 -----a~--fvDi~~d~a~~~~~~~p~-tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~ 209 (460)
T PRK13237 138 -----GI--FVDIIIDEAHDAQSDHPF-KGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDK 209 (460)
T ss_pred -----cE--EEeeecccccccccCCCC-CCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHH
Confidence 22 22221 11 22233221 1345567777888888 799999999999999999
Q ss_pred cCcEEEEccccccc-c-c-----CC-CCCccc----ccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhH
Q 013521 246 NGSIIVYDSAYAAY-I-T-----DP-SPRSIY----EIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVI 313 (441)
Q Consensus 246 ~~~~ii~De~~~~~-~-~-----~~-~~~~~~----~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~ 313 (441)
||+.||+|.++..- . + .+ ...++. ++.... .....|++|.++.+ . -|+++++++.+ .
T Consensus 210 ~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~a--D~~t~S~~K~~~~~-~-GG~i~t~D~eL-------~ 278 (460)
T PRK13237 210 HGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYA--DGCTMSGKKDCLVN-I-GGFLAMNDEEL-------F 278 (460)
T ss_pred cCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcC--cEEEEeCCCCCCCC-C-ceEEEECCHHH-------H
Confidence 99999999987632 1 0 00 122332 111112 26777899998754 1 38999887765 4
Q ss_pred HHHHHHHhh-----hcCCCcHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcC-
Q 013521 314 KDFNRIVCT-----CFNGASNIVQAG-GLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP- 386 (441)
Q Consensus 314 ~~~~~~~~~-----~~~~~~~~~~~a-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~- 386 (441)
++.+...-. ++.+.+.--..+ +..+.+-... ...+.--++.++|.+.|.+.|+.+..|.+|.-++++..
T Consensus 279 ~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~----~y~~~ri~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~ 354 (460)
T PRK13237 279 DEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQY----EYIEHRVGQVRYLGEKLLAAGVPIVEPVGGHAVFLDARR 354 (460)
T ss_pred HHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchH----HHHHHHHHHHHHHHHHHHHCCCceecCCCceEEEEEhHH
Confidence 444443211 111221211222 2222221111 33333334678899999999999988889988988753
Q ss_pred --------CCChHHHHHHHHHhcCeEEeC-CCCc-C--CCC-------CCeEEEEee---cCHHHHHHHHHHHHh
Q 013521 387 --------GSSSWDVFAEILEKTHILTIP-GSGF-G--PGG-------NEHIRVSAF---GHREYISEACRRLKN 439 (441)
Q Consensus 387 --------~~~~~~~~~~ll~~~gi~v~p-g~~f-~--~~~-------~~~iRls~~---~~~~~~~~~l~~l~~ 439 (441)
......++.+|..+.||--.- |+.. + +.+ -..+|+++- -+.+.++...++|..
T Consensus 355 ~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~ 429 (460)
T PRK13237 355 FLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIK 429 (460)
T ss_pred hCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHH
Confidence 124567888888888886542 3321 1 111 257999972 266777777666654
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=126.30 Aligned_cols=324 Identities=11% Similarity=0.075 Sum_probs=187.6
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|. ..+ ..+|.+.+++++.+.+... ....|. .....++.+.++++ .+ .+.+++++++++|
T Consensus 23 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~--~~~~~~-~~~~~~la~~l~~~----~~--~~~v~~~~SGseA 93 (364)
T PRK04013 23 GRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVV--AGPMFE-HEEKEEMLEELSKW----VN--YEYVYMGNSGTEA 93 (364)
T ss_pred CCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCC--ccCCcC-CHHHHHHHHHHHhh----cC--CCEEEEeCchHHH
Confidence 45688886653 222 3568899999998876421 111232 23344555555554 23 3689999999999
Q ss_pred HHH-HH--HhcCCCCEEEEeCCCchhhHhHHHHh-ccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEc
Q 013521 148 ISR-LQ--MLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~--~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~ 221 (441)
+.. +. ......++|+....+|++....+... +....-.........+..++..+. .++++ .+++++|++.
T Consensus 94 ~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~----~~l~~~i~~~~aAvivE 169 (364)
T PRK04013 94 VEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDV----EAAKEAITKETAAVIFE 169 (364)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCH----HHHHHHhcCCcEEEEEc
Confidence 986 42 22233389999999999865443332 111000000000012333333211 11111 2467777664
Q ss_pred CCCCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
..+...|. ..+++.+++|.++|++||+++|+||++..+ ..+.......+.-.|| +-+++|.+| .|+.+|.++.
T Consensus 170 pi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PD----iv~~gK~lg-gG~P~~a~~~ 243 (364)
T PRK04013 170 PIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPD----IVTMGKGIG-NGVPVSLTLT 243 (364)
T ss_pred CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCC----EEEeccccc-CCceeEEEEe
Confidence 43554555 457789999999999999999999999876 4333222222322345 345799998 7899999988
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
+.++. . .....+++.++++..++.+.++--.. +.+.++.++. + +.+..-.+.-.. .-|.+
T Consensus 244 ~~~~~--------~----~~~~~T~~gnp~~~aaa~a~l~~i~~---~~l~~~~~~~---l-~~l~~~~v~~vR-G~Gl~ 303 (364)
T PRK04013 244 NFDVE--------R----GKHGSTFGGNPLACKAVAVTLRILRR---ERLVEKAGEK---F-IEIKGERVVTTR-GRGLM 303 (364)
T ss_pred ccccc--------C----CCcCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHH---H-HHhccCcceeee-eCcEE
Confidence 76641 1 11233445788888888887762111 1111211111 2 122211111122 24677
Q ss_pred EEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+-+++.. ....+...+++ +|+.+.+. +.+.+|+. +..+++++++++++|.+++
T Consensus 304 ~gve~~~-~~~~i~~~~~~-~Gll~~~~------g~~vlr~~Ppl~it~~~i~~~~~~l~~~l 358 (364)
T PRK04013 304 IGIVLKK-PVGKYVEELQN-RGYLVHTA------GQRVIRLLPPLIISKDTMEEAKSAIEGVI 358 (364)
T ss_pred EEEEeCC-cHHHHHHHHHh-CCcEEeeC------CCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 7777753 23455556555 59998763 24679998 4568999999999998764
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-12 Score=130.43 Aligned_cols=340 Identities=12% Similarity=0.082 Sum_probs=193.6
Q ss_pred CCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|-. .+ ..+|.+.+++.+.+.+........++. .+.+..+|+.+....+-+.+.+++++++++
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~-----~~~~~~lae~L~~~~p~~~~~v~f~~sGSE 118 (459)
T PRK05965 44 SGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFG-----SEPAIRLAAKLAERAPGSLNHVYFTLGGSD 118 (459)
T ss_pred CCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccC-----CHHHHHHHHHHHhhCCCCcCEEEEeCChhH
Confidence 3567888866532 22 357899999999887642111111221 223334555544323334568999999999
Q ss_pred HHHH-HH--Hhc----C-C-CCEEEEeCCCchhhHhHHHHh-ccc---cccccccCccceeEEeecCCC--CCccCC---
Q 013521 147 DISR-LQ--MLL----G-S-NVTVAVQDPSFPAYIDTSVIV-GQA---GKFLKETGKYRNIVYMNCRPE--NNFFPD--- 208 (441)
Q Consensus 147 al~~-l~--~l~----~-~-gd~Vlv~~p~y~~~~~~~~~~-g~~---~~~~~~~~~~~~v~~v~~~~~--~~~~~~--- 208 (441)
|+.. +. ... + + ..+|+....+|++........ +.. ..+-+.. ..+..++.... ..+..+
T Consensus 119 Ave~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 195 (459)
T PRK05965 119 AVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPL---PWQHKIPSPYPYRNPVGDDPQA 195 (459)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCC---CCCEEcCCCcccccccCCChHH
Confidence 9886 42 222 1 2 357899999999975433222 211 0000000 01222222110 000001
Q ss_pred --------CCC------CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccC
Q 013521 209 --------LST------TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIP 272 (441)
Q Consensus 209 --------~~~------~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~ 272 (441)
+++ .+++.+|++ .| +...|.+ .|.+.+++|.++|++||+++|.||+...|...+.......+.
T Consensus 196 ~~~~~~~~l~~~i~~~~~~~iAAvIv-EPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~g 274 (459)
T PRK05965 196 IIAASVAALRAKVAELGADNVAAFFC-EPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEG 274 (459)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEE-eccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcC
Confidence 111 134555554 55 6556764 688999999999999999999999998775444322222232
Q ss_pred CCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH-------HHhhhcCCCcHHHHHHHHHhcCCCcH
Q 013521 273 GAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR-------IVCTCFNGASNIVQAGGLACLSPDGF 344 (441)
Q Consensus 273 ~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~ 344 (441)
-.|| |-+++|.++ .| +.+|.+++++++. +.+.. .....+++.++++..++.+.|+--..
T Consensus 275 v~PD----iv~~gKgl~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~ 341 (459)
T PRK05965 275 VVPD----LMTVAKGLT-SGYVPMGAVLMSDHVY--------QGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHE 341 (459)
T ss_pred CCCC----eEEechhhc-cCCcceeEEEEcHHHH--------HHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHh
Confidence 2355 334899998 88 5999999988873 33321 11223445788888888887752111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CCeeeCCCCceEEEEEcCC-C------C-----hHHHHHHHHHhcCeEEeCCC
Q 013521 345 QALRTVIDYYKENAKIIVDAFQSL---GLKVNGGKNAPYVWVQFPG-S------S-----SWDVFAEILEKTHILTIPGS 409 (441)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~-~------~-----~~~~~~~ll~~~gi~v~pg~ 409 (441)
+++.++.++.-+++.+.|+++ .+......-|.++-+++.. . . ...+...++ ++||.+.+.
T Consensus 342 ---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gll~~~~- 416 (459)
T PRK05965 342 ---GGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAY-ANGLVFRAF- 416 (459)
T ss_pred ---ccHHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHH-hCCeEEEec-
Confidence 334455556666666666654 2111111245665666531 0 0 123444444 559999752
Q ss_pred CcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 410 GFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 410 ~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+.+.||+. +..+++++++++++|.+++
T Consensus 417 -----g~~~i~~~PpL~it~~ei~~~~~~l~~~l 445 (459)
T PRK05965 417 -----GDGVLGFAPALCCTEGEFDLIFERTRKTL 445 (459)
T ss_pred -----CCcEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 34678988 4568999999999998764
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=134.13 Aligned_cols=299 Identities=20% Similarity=0.210 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEEeC
Q 013521 88 DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAVQD 165 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv~~ 165 (441)
++..+++.+.+.. ..+..+ ..-..++.+++++|+ + .+.++.+++++.|+.+ +..+ +++||+|+++.
T Consensus 5 ~e~~~~v~~~l~s----~~~~~~--g~~~~~fE~~~a~~~----g--~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~ 72 (363)
T PF01041_consen 5 EEEIDAVLEVLRS----GWLSTY--GPYVEEFEKEFAEYF----G--VKYAVAVSSGTSALHLALRALGLGPGDEVIVPA 72 (363)
T ss_dssp HHHHHHHHHHHHH----TCCSSS--SHHHHHHHHHHHHHH----T--SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEES
T ss_pred HHHHHHHHHHHHh----CCccCC--CHHHHHHHHHHHHHh----C--CCeEEEeCChhHHHHHHHHhcCCCcCceEecCC
Confidence 3455666666653 322222 345688999999997 4 5789999999999998 5444 57999999999
Q ss_pred CCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHH
Q 013521 166 PSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLV 240 (441)
Q Consensus 166 p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~ 240 (441)
.+|+.....+...| .++++++++++ .+..|.+. .+++++|++++. -|...+ +.+|.
T Consensus 73 ~t~~~~~~ai~~~G------------~~pv~~Di~~~-~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d---~~~i~ 133 (363)
T PF01041_consen 73 YTFPATASAILWAG------------AEPVFVDIDPE-TLNIDPEALEKAITPKTKAILVVHL---FGNPAD---MDAIR 133 (363)
T ss_dssp SS-THHHHHHHHTT-------------EEEEE-BETT-TSSB-HHHHHHHHHTTEEEEEEE-G---GGB------HHHHH
T ss_pred CcchHHHHHHHHhc------------cEEEEEeccCC-cCCcCHHHHHHHhccCccEEEEecC---CCCccc---HHHHH
Confidence 99999999999999 69999999975 55555443 478899988654 555544 99999
Q ss_pred HHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecC--CcccCCccceeEEEEeeccccccCCchhHHHHHH
Q 013521 241 EFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSF--SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNR 318 (441)
Q Consensus 241 ~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~ 318 (441)
++|++||++||+|.+++....-. ...+..+ . .+.+.|| +|.+. .| .-|+++++++.+ .+++..
T Consensus 134 ~~~~~~~i~lIeD~a~a~g~~~~-g~~~G~~---g--d~~~fSf~~~K~i~-~g-eGG~v~~~~~~~-------~~~~~~ 198 (363)
T PF01041_consen 134 AIARKHGIPLIEDAAQAFGARYK-GRPVGSF---G--DIAIFSFHPTKIIT-TG-EGGAVVTNDPEL-------AERARA 198 (363)
T ss_dssp HHHHHTT-EEEEE-TTTTT-EET-TEETTSS---S--SEEEEESSTTSSS--SS-S-EEEEESTHHH-------HHHHHH
T ss_pred HHHHHcCCcEEEccccccCceeC-CEeccCC---C--CceEecCCCCCCCc-CC-CCeeEEecHHHH-------HHHhhh
Confidence 99999999999999998533211 1222222 1 2677777 68885 33 349999988764 344444
Q ss_pred HHhhhc-----------------CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC-CCCc-
Q 013521 319 IVCTCF-----------------NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNG-GKNA- 378 (441)
Q Consensus 319 ~~~~~~-----------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~- 378 (441)
++.... ...+.+....+... .+.++...+.-+++.+.+.+.|... ++.... +.+.
T Consensus 199 ~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~Q-----L~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~ 273 (363)
T PF01041_consen 199 LRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQ-----LKRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAE 273 (363)
T ss_dssp HTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHH-----HHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTE
T ss_pred hhccCcCccccccccccccCCcccccHHHHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHHHhcCCCccccccccccc
Confidence 332221 11223322222222 3445777777778888899999887 553322 2221
Q ss_pred ---e-EEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCC--cC------CC-----C---------CCeEEEEeec--CH
Q 013521 379 ---P-YVWVQFPGS---SSWDVFAEILEKTHILTIPGSG--FG------PG-----G---------NEHIRVSAFG--HR 427 (441)
Q Consensus 379 ---~-~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~--f~------~~-----~---------~~~iRls~~~--~~ 427 (441)
+ .+.+.++.. ...++.+.|.+ .||.+.+... +. .. + ...+.|-+.. +.
T Consensus 274 ~~~~~~f~i~~~~~~~~~rd~l~~~L~~-~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~ 352 (363)
T PF01041_consen 274 RSSYYRFPIRLPDEALADRDELVEALRA-RGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTE 352 (363)
T ss_dssp EBCESSEEEEETCCGCSTHHHHHHHHHH-TTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCH
T ss_pred ccccccccccccccccchHHHHHHHHHH-CCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCH
Confidence 1 244555532 44566666554 5999988652 11 00 0 1235555432 78
Q ss_pred HHHHHHHHHHH
Q 013521 428 EYISEACRRLK 438 (441)
Q Consensus 428 ~~~~~~l~~l~ 438 (441)
++++..++.|+
T Consensus 353 edv~~I~~~ir 363 (363)
T PF01041_consen 353 EDVDYIAEAIR 363 (363)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhccC
Confidence 88888888774
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=131.22 Aligned_cols=344 Identities=17% Similarity=0.189 Sum_probs=181.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC--CCCC-CcCcHHHHHHHHHHHhhhCCCCC----CcEEEcCCcH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK--GYGA-EQGNMALRTAIADKFYKDMGIEG----DEIFISDGAQ 145 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~-~~g~~~lr~~ia~~l~~~~~~~~----~~I~~t~G~~ 145 (441)
..|+|--.++- .++.+.+++...+..... .++. +|.. ..-..++.+...+...+.|++++ -+|-.-+|++
T Consensus 21 ~~l~LiaSEN~--~Sp~v~~al~S~l~nkya-eg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~ 97 (399)
T PF00464_consen 21 STLNLIASENY--MSPAVREALGSDLTNKYA-EGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQ 97 (399)
T ss_dssp HSEE-CTT-------HHHHHHHTSGGGGS-T-TEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHH
T ss_pred cCccccCcccc--cCHHHHHHhCCcceeecc-ccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchH
Confidence 35787766652 457777777765543221 1111 2222 22222333333333344678883 4677788888
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEE
Q 013521 146 SDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIF 219 (441)
Q Consensus 146 ~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~ 219 (441)
..+..+.++++|||+|+..++...++...-.....+.+ .....+.+.+.++++++. ...|.++ ..+||+|+
T Consensus 98 An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~--~~~~~~~~~~~y~~d~~~-~~ID~d~l~~~a~~~kPklIi 174 (399)
T PF00464_consen 98 ANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKI--SASGLYFESVPYPVDPDT-GLIDYDELEKLAKEHKPKLII 174 (399)
T ss_dssp HHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBS--SHHHHHSEEEEEEB-TTT-SSB-HHHHHHHHHHH--SEEE
T ss_pred HHHHHHHHHHhhcCcEEecChhhccccccccccccccc--ccccceEEEEeeeeecCC-CeECHHHHHHHHhhcCCCEEE
Confidence 77777899999999999999888776432222111000 000112478888888653 3455443 36899988
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+-.-.+|- + -+.+++.++|++.|.+++.|-+|.- +...+. |.|+. . + .++.+|.+|+| +|.|-|.
T Consensus 175 ~G~S~y~~----~-~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~-~--A---Dvvt~sThKtl--~GPrggi 241 (399)
T PF00464_consen 175 CGASSYPR----P-IDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFP-Y--A---DVVTGSTHKTL--RGPRGGI 241 (399)
T ss_dssp EE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCC-T--S---SEEEEESSGGG---SSS-EE
T ss_pred ECchhccC----c-cCHHHHHHHHHhcCcEEEecccccccceehheecCccc-c--c---eEEEeeccccc--cccCceE
Confidence 75434432 2 2378888889999999999999874 444443 33442 2 1 28899999998 7999999
Q ss_pred EEeeccccccC------CchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013521 298 TVVPEELRYSN------GYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD-GFQALRTVIDYYKENAKIIVDAFQSLGL 370 (441)
Q Consensus 298 l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 370 (441)
+++++...... ...+.+.+.........+.+.+...++.+.--.+ .....+...++..++.+.|.+.|.+.|+
T Consensus 242 I~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~ 321 (399)
T PF00464_consen 242 ILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGF 321 (399)
T ss_dssp EEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred EEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99982110000 0112444443322222223334444333332211 1134578888888999999999999999
Q ss_pred eeeC-CCCceEEEEEcCC-CChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEee------cCHHHHHHHHHH
Q 013521 371 KVNG-GKNAPYVWVQFPG-SSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSAF------GHREYISEACRR 436 (441)
Q Consensus 371 ~~~~-~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~~------~~~~~~~~~l~~ 436 (441)
++.. ......+|+++.. ..+...+...|++.||.+. |+. =.+..+..|||+.. -.++++++..+.
T Consensus 322 ~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d-~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~ 398 (399)
T PF00464_consen 322 KVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGD-RSPFVPSGLRLGTPALTRRGMKEEDMKEIAEL 398 (399)
T ss_dssp EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTT-STTTT-SEEEEESHHHHHTT--HHHHHHHHHH
T ss_pred EEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCC-CCCCCCCEEEECCHHHHhCCCCHHHHHHHHhh
Confidence 8864 3456789999963 2345567788889999986 433 11223578999951 246777766554
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-12 Score=137.54 Aligned_cols=341 Identities=17% Similarity=0.143 Sum_probs=203.4
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC-----CcCcHHHHHHHHHHH
Q 013521 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA-----EQGNMALRTAIADKF 127 (441)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~ia~~l 127 (441)
....++.+.......++.. -..-++.|.++.-.|+.+.+.+.+ +. ..+..|+| .+|..+..-.+...+
T Consensus 58 ~sE~e~~~~~~~la~~N~~-~~~~ig~G~y~~~~P~vi~~~i~~---~~---~~~t~ytPyQ~EisQG~Leal~~~Qt~l 130 (954)
T PRK05367 58 LSEAEALAELRAIASKNKV-FRSYIGQGYYGTHTPPVILRNILE---NP---AWYTAYTPYQPEISQGRLEALLNFQTMV 130 (954)
T ss_pred CCHHHHHHHHHHHHhcCCC-CCcccCCCCCCCcCcHHHHHHHHh---Cc---chhhccCCCChHHHHHHHHHHHHHHHHH
Confidence 3344455554444444322 123456666665566666555544 21 22344544 345544444444444
Q ss_pred hhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCC--CCEEEEeCCCchhhHhHHHHhc-cccccccccCccceeEEeecCCC
Q 013521 128 YKDMGIEGDEIFISDGAQSDISR-LQML-LGS--NVTVAVQDPSFPAYIDTSVIVG-QAGKFLKETGKYRNIVYMNCRPE 202 (441)
Q Consensus 128 ~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~--gd~Vlv~~p~y~~~~~~~~~~g-~~~~~~~~~~~~~~v~~v~~~~~ 202 (441)
.+..|.++.++.+..+++++.+. ++.+ +.+ +++|++++-.||.....++... ..| ++++.++.+.+
T Consensus 131 a~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G---------~ev~~~~~~~d 201 (954)
T PRK05367 131 ADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLG---------IEVVVGDAAKA 201 (954)
T ss_pred HHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCC---------CEEEEecCccC
Confidence 44568999999999999999986 4444 445 4899999999999876654431 122 48888887431
Q ss_pred CCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEe
Q 013521 203 NNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEIS 282 (441)
Q Consensus 203 ~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 282 (441)
+. ..++..+++.+| |-+|.+.+ +++|++.|+++|+++++|....-+..- .+..++ +-+|+++
T Consensus 202 ------~~-~~~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~l---~~pge~----GaDi~vg 263 (954)
T PRK05367 202 ------LD-HDDVFGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAVAADLLALTLL---TPPGEM----GADIAVG 263 (954)
T ss_pred ------CC-cccEEEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEehhhhccCC---CChhhc----CCCEEEe
Confidence 11 134555666676 55999987 999999999999999998754322211 122222 3459999
Q ss_pred cCCcc-----cCCccceeEEEEeeccccccCCchhHH--------------------HHHHHHhhhcCCCcHHHHHHHHH
Q 013521 283 SFSKF-----AGFTGVRLGWTVVPEELRYSNGYPVIK--------------------DFNRIVCTCFNGASNIVQAGGLA 337 (441)
Q Consensus 283 S~SK~-----~~~~G~r~G~l~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~a~~~ 337 (441)
|..|+ +|-| ..|++.+++++...--..++. .+++.+.....++ .-...++.+
T Consensus 264 s~qkfg~P~g~GGP--~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict-~qaL~a~~a 340 (954)
T PRK05367 264 SAQRFGVPMGFGGP--HAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICT-AQVLLAVMA 340 (954)
T ss_pred eCcccCCCCCCCCC--CEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccch-HHHHHHHHH
Confidence 99998 5544 499999988764221000000 0111111111111 111111221
Q ss_pred hc--CCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCC
Q 013521 338 CL--SPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGG 415 (441)
Q Consensus 338 ~l--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 415 (441)
.+ .-.+...+++..++...+..++.+.|++.|+++..+.-..-+.++++ .+..++.++++++ ||.+..- .
T Consensus 341 ~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~f~~~~~~~~-~~~~~i~~~l~~~-gi~~~~~------~ 412 (954)
T PRK05367 341 SMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDSFFDTLTVEVG-GDAAAVLARALAA-GINLRRV------D 412 (954)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCeEEEeCC-CCHHHHHHHHHHC-Cceeccc------c
Confidence 11 11122456788888889999999999887877654321122445554 3566777777655 9988331 2
Q ss_pred CCeEEEEe--ecCHHHHHHHHHHHH
Q 013521 416 NEHIRVSA--FGHREYISEACRRLK 438 (441)
Q Consensus 416 ~~~iRls~--~~~~~~~~~~l~~l~ 438 (441)
++.+|+|+ .+++++++.+++.|.
T Consensus 413 ~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 413 DDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred CCEEEEEecccCCHHHHHHHHHHHc
Confidence 45799997 568999999999986
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-13 Score=131.56 Aligned_cols=339 Identities=11% Similarity=0.071 Sum_probs=184.3
Q ss_pred CCCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH
Q 013521 69 HPDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ 145 (441)
Q Consensus 69 ~~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~ 145 (441)
..++.+||+..|.. .+ ..+|.+.+++.+.+.... ...+ +. +.+..+|+.+....+...+.+.++++++
T Consensus 50 ~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~----~~~~-~~----~~~~~la~~L~~~~~~~~~~v~f~~SGs 120 (433)
T PRK00615 50 SLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT----SYGL-TS----EQEILFAEELFSYLGLEDHKIRFVSSGT 120 (433)
T ss_pred CCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCC----CCCC-CC----HHHHHHHHHHHHhCCCCcCEEEEeCchH
Confidence 34667889876642 22 367999999999887521 1122 22 2334445544432333336899999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEeCCCchhhHhH---HHHhcccccccc-c----cCccceeEEeecCCCCCccCCCCC-CC
Q 013521 146 SDISR-L--QMLLGSNVTVAVQDPSFPAYIDT---SVIVGQAGKFLK-E----TGKYRNIVYMNCRPENNFFPDLST-TS 213 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~~~-~----~~~~~~v~~v~~~~~~~~~~~~~~-~~ 213 (441)
+|+.. + .........|+...-+|++.... ....+....... . .........++.++...+...+.. .+
T Consensus 121 EA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 200 (433)
T PRK00615 121 EATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGH 200 (433)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCC
Confidence 99886 3 22233346788888899986422 111110000000 0 000001111111100000000111 13
Q ss_pred CccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 214 RTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 214 ~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
++.+| |..| +.-.|... +++.+++|.++|++||+++|.||++..+ ..+.......+.-.+| |+ +|+|.+| .
T Consensus 201 ~~aav-I~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PD--i~--~~gK~lg-g 273 (433)
T PRK00615 201 RVAGV-IFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPD--IT--VYGKILG-G 273 (433)
T ss_pred ceEEE-EECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCC--eE--EEccccc-C
Confidence 44554 4556 55567655 5789999999999999999999999766 2221111111222344 32 4899998 7
Q ss_pred cceeEEEEeeccccccCCchhHHHHHH---HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH----HH
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNR---IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV----DA 364 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~----~~ 364 (441)
|+.+|++++++++. +.+.. .....+.+.+++...++.+.|+.-.. +...++.+++-+++. +.
T Consensus 274 G~p~~av~~~~~i~--------~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~---~~~~~~~~~~g~~l~~~l~~~ 342 (433)
T PRK00615 274 GLPAAAVVAHKSIM--------DHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE---QGFYTQLSTLEQNFLSPIEEM 342 (433)
T ss_pred CcceeeeeecHHHH--------hhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHH
Confidence 88899999988873 33321 11122333577777777777762111 223444444444444 44
Q ss_pred HHhCCCeeeCCCCceEEEEEcCCC-----------C---hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHH
Q 013521 365 FQSLGLKVNGGKNAPYVWVQFPGS-----------S---SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYI 430 (441)
Q Consensus 365 L~~~g~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~ 430 (441)
+.+.|+.+.....|.++.+.+... + ...+...+++ +||.+.|... . ... ++...+++++
T Consensus 343 ~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~-~---~~~--ls~~ht~~di 415 (433)
T PRK00615 343 IRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFS-KGVYLSPSPF-E---ASF--LSSAHSMENL 415 (433)
T ss_pred HHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHH-CCeeecCccc-c---ccc--eecCCCHHHH
Confidence 444454332112455666666311 0 1235555555 5999987542 1 112 4666799999
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
+++++++.+++
T Consensus 416 d~~~~a~~~~~ 426 (433)
T PRK00615 416 DYAQNVLIDSL 426 (433)
T ss_pred HHHHHHHHHHH
Confidence 99999998763
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-12 Score=129.46 Aligned_cols=338 Identities=12% Similarity=0.060 Sum_probs=191.5
Q ss_pred CCCCeEEeCCC-CCCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 70 PDARLIRLGIG-DTTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 70 ~~~~~i~l~~g-~~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
.++.++|+..+ ...+. .+|.+.+++.+.+.+... ....| .. +.+..+++.+.+..+-..+.+++++++++|
T Consensus 70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~--~~~~~-~~----~~~~~lae~L~~~~p~~~~~v~f~~sGseA 142 (459)
T PRK06082 70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPF--SPRRF-TN----ETAIECAEKLTEIAGGELNRVLFAPGGTSA 142 (459)
T ss_pred CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCC--ccCcc-CC----HHHHHHHHHHHHhCCCCCCEEEECCCcHHH
Confidence 35678887632 12232 678999999999876431 11123 22 344445555543233334799999999999
Q ss_pred HHHHHHh---cCCCCEEEEeCCCchhhHhHHH-Hhcccc---ccccccCccceeEEeecCCCCC--cc----------CC
Q 013521 148 ISRLQML---LGSNVTVAVQDPSFPAYIDTSV-IVGQAG---KFLKETGKYRNIVYMNCRPENN--FF----------PD 208 (441)
Q Consensus 148 l~~l~~l---~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~---~~~~~~~~~~~v~~v~~~~~~~--~~----------~~ 208 (441)
+.....+ .....+|+....+|++....+. ..+... .+.+.. ..+..++...... +. ..
T Consensus 143 ve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (459)
T PRK06082 143 IGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLM---AGVERIPPAVSYRGAFPDADGSDVHYADY 219 (459)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCC---CCCEEeCCCcccccccCChhHHHHHHHHH
Confidence 9863322 2344788888899988643332 222110 000000 1122232111000 00 00
Q ss_pred CC----CCCCccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEec
Q 013521 209 LS----TTSRTDIIFFCSP-NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISS 283 (441)
Q Consensus 209 ~~----~~~~~~~v~i~~p-~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 283 (441)
++ ..+++.+|+ ..| ++..+...|++.+++|.++|++||+++|.||++..|...+.......+.-.|| |+ +
T Consensus 220 l~~~i~~~~~vAavI-vEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PD--iv--~ 294 (459)
T PRK06082 220 LEYVIEKEGGIGAFI-AEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPD--IL--C 294 (459)
T ss_pred HHHHHhcCCCEEEEE-ECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCC--EE--E
Confidence 11 113454544 466 55445567889999999999999999999999987644332211122222345 33 3
Q ss_pred CCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 013521 284 FSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 284 ~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 362 (441)
++|.+| .| +.+|.+++++++. ..+.......+.+.++++..++.+.++.-.. +.+.++.+++-+++.
T Consensus 295 ~gKgl~-gG~~P~~av~~~~~i~--------~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~ 362 (459)
T PRK06082 295 IGKGLG-GGLVPIAAMITKDKYN--------TAAQISLGHYTHEKSPLGCAAALATIEVIEQ---EGLLEKVKADSQFMR 362 (459)
T ss_pred eccccc-CCCCcceEEEEcHHHH--------hhccCCCCCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHH
Confidence 899998 77 5899999887752 1111000112445678888878777762111 234555666666666
Q ss_pred HHHHhC----CCeeeCCCCceEEEEEcCCC-----C----hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCH
Q 013521 363 DAFQSL----GLKVNGGKNAPYVWVQFPGS-----S----SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHR 427 (441)
Q Consensus 363 ~~L~~~----g~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~ 427 (441)
+.|+++ ++......-|.++-+++... . ...+...++ ++||.+.+. +.+.+|++ +..++
T Consensus 363 ~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~------~~~~i~~~Ppl~it~ 435 (459)
T PRK06082 363 ERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCL-NNGLSFKVS------QGNVIQLSPPLIITR 435 (459)
T ss_pred HHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHH-hCCCEEEec------CCCEEEEeCCCccCH
Confidence 666543 32211112466666666311 0 123444555 459998763 23679998 45689
Q ss_pred HHHHHHHHHHHhhC
Q 013521 428 EYISEACRRLKNFL 441 (441)
Q Consensus 428 ~~~~~~l~~l~~~l 441 (441)
++++++++++.+++
T Consensus 436 ~eid~~~~~l~~~l 449 (459)
T PRK06082 436 EELTQALAILEEAI 449 (459)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-12 Score=129.42 Aligned_cols=341 Identities=12% Similarity=0.042 Sum_probs=193.6
Q ss_pred CCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|-. .+ ..+|.+.+++.+.+.+.........+ ..+.+..+|+.+.+..+-..+.+++++++++
T Consensus 48 dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~-----~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSE 122 (461)
T PRK07482 48 QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGH-----GTEASITLSKRIIDRAPAGMSKVYYGLSGSD 122 (461)
T ss_pred CCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCcccccccc-----CCHHHHHHHHHHHHhCCCCcCEEEEeCchHH
Confidence 4567888877743 22 36789999999998763210111122 1344455555554433333578999999999
Q ss_pred HHHH-HH--Hhc----C-C-CCEEEEeCCCchhhHhHHHHhcccc----ccccccCccceeEEeecCCCCC---------
Q 013521 147 DISR-LQ--MLL----G-S-NVTVAVQDPSFPAYIDTSVIVGQAG----KFLKETGKYRNIVYMNCRPENN--------- 204 (441)
Q Consensus 147 al~~-l~--~l~----~-~-gd~Vlv~~p~y~~~~~~~~~~g~~~----~~~~~~~~~~~v~~v~~~~~~~--------- 204 (441)
|+.. +. ... . + ..+|+....+|++....+....... .+.+.. ..+..++......
T Consensus 123 Ave~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~ 199 (461)
T PRK07482 123 ANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPI---ARVLHTEAPHYYRRADAGMSEE 199 (461)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCC---CCCEEcCCCccccccccCCCHH
Confidence 9986 42 111 1 2 3578889999999643322222110 000000 1122222211000
Q ss_pred -c----cCCCC----C--CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc
Q 013521 205 -F----FPDLS----T--TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 205 -~----~~~~~----~--~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
+ ...++ . .+++.+|+ ..| +.-.|.+ .|++.+++|.++|++||+++|.||+...|...+.......+
T Consensus 200 ~~~~~~~~~l~~~~~~~~~~~iAAvi-~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~ 278 (461)
T PRK07482 200 QFSAYCADELEELILAEGPDTIAAFI-AEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHY 278 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhc
Confidence 0 00011 1 13455555 466 5555766 57889999999999999999999999877544432222223
Q ss_pred CCCcceeEEEecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHH-------HHhhhcCCCcHHHHHHHHHhcCCCc
Q 013521 272 PGAREVAIEISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNR-------IVCTCFNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~ 343 (441)
.-.|| ++ +++|.++ .|. .+|.+++.+++. +.+.. .....+.+.++++..++.+.|+.-.
T Consensus 279 gv~PD--iv--~~gKgl~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~ 345 (461)
T PRK07482 279 GIEPD--LI--TVAKGLT-SAYAPLSGSIVGEKVW--------DVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILE 345 (461)
T ss_pred CCCCC--EE--EEccccc-cCccccceeeecHHHH--------HHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHH
Confidence 22355 33 3799998 785 899988887762 33321 1122344578888888888876211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----CCCeeeCCCCceEEEEEcCC-C------C-----hHHHHHHHHHhcCeEEeC
Q 013521 344 FQALRTVIDYYKENAKIIVDAFQS----LGLKVNGGKNAPYVWVQFPG-S------S-----SWDVFAEILEKTHILTIP 407 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~~~-~------~-----~~~~~~~ll~~~gi~v~p 407 (441)
. +...+..++.-+++.+.|++ +++.......|.++-+++.. . + ...+...+++ +||.+.+
T Consensus 346 ~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~ 421 (461)
T PRK07482 346 R---ENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALE-RGVIARA 421 (461)
T ss_pred h---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHH-CCcEEec
Confidence 1 22334445555555555543 33322111246666666631 1 0 1234555554 5999865
Q ss_pred CCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 408 GSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 408 g~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+. ..+.+|+. +..+++++++++++|.+++
T Consensus 422 ~~-----~~~~i~~~Ppl~it~~ei~~~~~~l~~~l 452 (461)
T PRK07482 422 MP-----HGDILGFAPPLVLTRAEADEIVAIAKDAV 452 (461)
T ss_pred CC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 31 13578887 5679999999999998764
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.7e-13 Score=130.85 Aligned_cols=337 Identities=12% Similarity=0.074 Sum_probs=194.8
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|- ..+ ..+|.+.+++.+.+.+... .....+ .. +.+..+|+.+.+..+..-+.+++++++++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~-~~----~~~~~lAe~L~~~~p~~~~~v~f~~sGse 125 (453)
T PRK06943 52 DGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEH-AMLAGC-TH----EPAIELAERLAALTGGTLGHAFFASDGAS 125 (453)
T ss_pred CCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCC-cccccc-CC----HHHHHHHHHHHHhCCCCCCEEEEeCCCHH
Confidence 456788887663 222 3678999999998876421 111122 12 34445555554323333368999999999
Q ss_pred HHHH-HHHh---c----C-CCCEEEEeCCCchhhHhHHHHhccccc----cccccCccceeEEeecCCCCCcc-------
Q 013521 147 DISR-LQML---L----G-SNVTVAVQDPSFPAYIDTSVIVGQAGK----FLKETGKYRNIVYMNCRPENNFF------- 206 (441)
Q Consensus 147 al~~-l~~l---~----~-~gd~Vlv~~p~y~~~~~~~~~~g~~~~----~~~~~~~~~~v~~v~~~~~~~~~------- 206 (441)
|+.. +... . . ...+|+....+|++....+........ +.+.. ..+..++........
T Consensus 126 Ave~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~ 202 (453)
T PRK06943 126 AVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLI---RHAHVVASPDARGARPGETAAD 202 (453)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCC---CCCEEECCCCccccccCCCHHH
Confidence 9886 4221 1 1 236799999999986533322221100 00000 012223221110000
Q ss_pred ------CCCC----C-CCCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccC
Q 013521 207 ------PDLS----T-TSRTDIIFFCSP--NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIP 272 (441)
Q Consensus 207 ------~~~~----~-~~~~~~v~i~~p--~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~ 272 (441)
.+++ . .+++.+|++ .| +.-.|. ..|.+.++++.++|++||+++|.||+...|...+.......+.
T Consensus 203 ~~~~~~~~l~~~l~~~~~~iAAvii-EPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~g 281 (453)
T PRK06943 203 VAARALADVRRLFAERAGKIAALIV-EPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAG 281 (453)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEE-eccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCC
Confidence 0111 1 245666554 55 566676 4689999999999999999999999998775443322222232
Q ss_pred CCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH------HHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 273 GAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR------IVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 273 ~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
-.|| +-+++|.++ .| +.+|.+++++++. +.+.. .....+++.++++..++.+.|+--..
T Consensus 282 v~PD----ivt~gKgl~-gG~~Pi~av~~~~ei~--------~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~- 347 (453)
T PRK06943 282 VWPD----FLCLSKGIS-GGYLPLSLVLSRDAIF--------AAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE- 347 (453)
T ss_pred CCCC----eEeeehhhc-cCcccceEEEEcHHHH--------HhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHh-
Confidence 2355 334799998 88 5999999988873 33321 11223444678888888888762111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcC-CCC-----hHHHHHHHHHhcCeEEeCCCCcCCCC
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFP-GSS-----SWDVFAEILEKTHILTIPGSGFGPGG 415 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~ll~~~gi~v~pg~~f~~~~ 415 (441)
+++.++.++.-+++.+.|+++ ++.-.. ..|.++-+++. +.+ ...+...++ ++||.+.+. +
T Consensus 348 --~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vr-G~Gl~~gvel~~~~~~~~~~~~~i~~~~~-~~Gll~~~~------g 417 (453)
T PRK06943 348 --DDVLARNARKSARLRAALAPLAAHPQVRHLR-QRGTIFAFDVALDGDAARTFSRRFFEAAL-ERELLLRPI------G 417 (453)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHhcCCCEEeEe-ccccEEEEEEccCCCcchHHHHHHHHHHH-HCCcEEEec------C
Confidence 233444555555565665543 232222 24666666664 211 123445555 459999763 1
Q ss_pred CCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 416 NEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 416 ~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+.+||+ +..+++++++++++|.++|
T Consensus 418 -~~l~~~Ppl~it~~eid~~~~~l~~al 444 (453)
T PRK06943 418 -TTVYLMPPYVLDDDEIAWLAERTRATL 444 (453)
T ss_pred -CEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence 358998 6779999999999998764
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-12 Score=128.35 Aligned_cols=337 Identities=18% Similarity=0.204 Sum_probs=192.2
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|- ..+ ..+|.+.+++.+.+.++.... ...+. .+....+|+.|.+..+...+.+++++++++
T Consensus 47 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~-~~~~~-----~~~~~~la~~L~~~~p~~~~~v~f~~sGse 120 (445)
T PRK09221 47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAP-AFQMG-----HPLAFELAERLAELAPGGLDHVFFTNSGSE 120 (445)
T ss_pred CCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCcc-ccccC-----CHHHHHHHHHHHHhCCCCCCEEEEeCCcHH
Confidence 356788887663 222 367889999999887643111 11221 223344555554322323468999999999
Q ss_pred HHHH-HH--Hhc----C-C-CCEEEEeCCCchhhHhHHHHhcc-cc---ccccccCccceeEEeecCC---CCCcc----
Q 013521 147 DISR-LQ--MLL----G-S-NVTVAVQDPSFPAYIDTSVIVGQ-AG---KFLKETGKYRNIVYMNCRP---ENNFF---- 206 (441)
Q Consensus 147 al~~-l~--~l~----~-~-gd~Vlv~~p~y~~~~~~~~~~g~-~~---~~~~~~~~~~~v~~v~~~~---~~~~~---- 206 (441)
|+.. +. ... + + ..+|+....+|++....+..... .. .+.+.. ..+..++... ...+.
T Consensus 121 Ave~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 197 (445)
T PRK09221 121 SVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLL---PGVDHLPHTLDLPENAFSKGQP 197 (445)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCC---CCCeEeCCCccccccccCCChH
Confidence 9886 42 222 1 1 35789899999986433322211 00 000000 1222333211 00000
Q ss_pred -------CCCCC------CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc
Q 013521 207 -------PDLST------TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 207 -------~~~~~------~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
.++++ ..++.+|+ ..| +...|.. .+.+.+++|.++|++||+++|.||++..|...+.......+
T Consensus 198 ~~~~~~~~~l~~~i~~~~~~~iAavi-~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~ 276 (445)
T PRK09221 198 EHGAELADDLERLVALHDASTIAAVI-VEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERF 276 (445)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEE-EecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhc
Confidence 01111 13455555 455 6667775 57888999999999999999999999765433322222222
Q ss_pred CCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH-------HHhhhcCCCcHHHHHHHHHhcCCCc
Q 013521 272 PGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR-------IVCTCFNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~ 343 (441)
.-.|| +-+++|.++ .| +.+|.+++++++. +.+.. .....+.+.++++..++.+.|+.-.
T Consensus 277 gv~PD----i~~~gK~l~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~ 343 (445)
T PRK09221 277 GVTPD----IITFAKGLT-NGAIPMGAVIASDEIY--------DAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYR 343 (445)
T ss_pred CCCCC----EEEeccccc-cCcccceeeEEcHHHH--------HhhccCcccccccccccCCCcCHHHHHHHHHHHHHHH
Confidence 22344 347999997 66 6799999887763 22221 1112234467777777777775211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCee---eCCCCceEEEEEcCC--C----ChHHHHHHHHHhcCeEEeCCCCcCC
Q 013521 344 FQALRTVIDYYKENAKIIVDAFQSL-GLKV---NGGKNAPYVWVQFPG--S----SSWDVFAEILEKTHILTIPGSGFGP 413 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~---~~~~~~~~~~~~~~~--~----~~~~~~~~ll~~~gi~v~pg~~f~~ 413 (441)
. +.+.++.++..+++.+.|+++ +... .. .-|...-+.+.. . ....+.+.+++ +||.+.++
T Consensus 344 ~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vr-g~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~----- 413 (445)
T PRK09221 344 E---EDLFERAAELAPYFEDAVHSLKGLPHVIDIR-NIGLVAGIELAPRPGAPGARGYEAFMKCFE-KGLLVRYT----- 413 (445)
T ss_pred h---ccHHHHHHHHHHHHHHHHHhhccCCCEEEEe-cCceEEEEEEecccccccchHHHHHHHHHH-CCeEEeec-----
Confidence 1 234566667777777777664 2111 11 134455555531 1 12345566554 59999763
Q ss_pred CCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 414 GGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 414 ~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+.+||+ +..+++++++++++|.+++
T Consensus 414 --~~~lr~~Ppl~~t~~eid~~~~~l~~~l 441 (445)
T PRK09221 414 --GDTIALSPPLIIEKAQIDELVDALGDAL 441 (445)
T ss_pred --CCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 2479999 5668999999999998764
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-12 Score=129.08 Aligned_cols=339 Identities=13% Similarity=0.103 Sum_probs=191.3
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhC-CCCCCcEEEcCCcH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDM-GIEGDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~-~~~~~~I~~t~G~~ 145 (441)
.++.++|+..|- ..+ ..+|.+.+++.+.+.+........ .+..+....+|+.|.+.+ +.+.+.++++++++
T Consensus 87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~-----~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGs 161 (504)
T PLN02760 87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFW-----NRTTKPSLDLAKELLEMFTARKMGKVFFTNSGS 161 (504)
T ss_pred CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceeccc-----ccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChH
Confidence 467889988763 222 467899999999987642111111 122344555666554322 22345789999999
Q ss_pred HHHHH-HHHhc------C-C-CCEEEEeCCCchhhHhHHHH-hcccc---ccccccCccceeEEeecCC-------CCC-
Q 013521 146 SDISR-LQMLL------G-S-NVTVAVQDPSFPAYIDTSVI-VGQAG---KFLKETGKYRNIVYMNCRP-------ENN- 204 (441)
Q Consensus 146 ~al~~-l~~l~------~-~-gd~Vlv~~p~y~~~~~~~~~-~g~~~---~~~~~~~~~~~v~~v~~~~-------~~~- 204 (441)
+|... +.... . + ...|+..+-+|++....... .|... .+.+.. ..+..++... ...
T Consensus 162 EA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~ 238 (504)
T PLN02760 162 EANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPA---PFVLHTDCPHYWRFHLPGETE 238 (504)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCC---CCcEEeCCCcccccCCCCCcH
Confidence 99886 42221 1 2 25788889899886432222 22110 000000 0122222110 000
Q ss_pred --c----cCCCC-----C-CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc
Q 013521 205 --F----FPDLS-----T-TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE 270 (441)
Q Consensus 205 --~----~~~~~-----~-~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~ 270 (441)
+ ..+++ . ..++.+| |..| +.-.|.+ .|.+.+++|.++|++||+++|.||++..|...+.......
T Consensus 239 ~~~~~~~~~~le~~l~~~~~~~iAAv-I~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~ 317 (504)
T PLN02760 239 EEFSTRLADNLENLILKEGPETIAAF-IAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDK 317 (504)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEE-EECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHh
Confidence 0 00111 1 1234454 4566 5556765 5789999999999999999999999976644332211112
Q ss_pred cCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH-------HHhhhcCCCcHHHHHHHHHhcCCC
Q 013521 271 IPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR-------IVCTCFNGASNIVQAGGLACLSPD 342 (441)
Q Consensus 271 ~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~ 342 (441)
+.-.|| +.+|+|.+| .| +.+|.+++++++. +.+.. .....+++.++++..++.+.|+.-
T Consensus 318 ~gv~PD----ivtlgK~lg-gG~~PigAv~~~~~i~--------d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i 384 (504)
T PLN02760 318 YNIKPD----LVSLAKALS-SAYMPIGAVLVSPEIS--------DVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIY 384 (504)
T ss_pred cCCCCc----EEEeccccc-CCccccceEeecHHHH--------hhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHH
Confidence 222344 567999997 66 4899999988773 33321 112233446788888888888621
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhC---CCeeeCCCCceEEEEEcCC-CC-----------hHHHHHHHHHhcCeEEeC
Q 013521 343 GFQALRTVIDYYKENAKIIVDAFQSL---GLKVNGGKNAPYVWVQFPG-SS-----------SWDVFAEILEKTHILTIP 407 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~ll~~~gi~v~p 407 (441)
.. +...++.+++.+.+.+.|+++ ++....-.-|.++-+++.. .. ...+...++ ++||.+.+
T Consensus 385 ~~---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~ 460 (504)
T PLN02760 385 KE---RNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECK-KRGMLVRV 460 (504)
T ss_pred Hh---CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHH-hCCcEEEe
Confidence 11 234555555556666655543 3211111245666666631 11 122444544 45999976
Q ss_pred CCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 408 GSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 408 g~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
. .+.+|++ +..+++++++++++|.+++
T Consensus 461 ~-------g~~lrl~Ppl~it~eeid~~~~~l~~al 489 (504)
T PLN02760 461 A-------GDNIMMSPPLIITPEEVDELISIYGKAL 489 (504)
T ss_pred c-------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3 1468999 5579999999999998764
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-12 Score=128.78 Aligned_cols=335 Identities=13% Similarity=0.132 Sum_probs=188.4
Q ss_pred CCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|.. .+ ..+|.+.+++.+.+.+.. ...+ +. +.+..+|+.+....+ ..+.+.+++++++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~----~~~~-~~----~~~~~la~~l~~~~p-~~~~v~f~~sGse 120 (428)
T PRK12389 51 DGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGV----LYGT-PT----ELEIEFAKMLKEAIP-SLEKVRFVNSGTE 120 (428)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC----ccCC-CC----HHHHHHHHHHHHhCC-CCcEEEEeCCHHH
Confidence 4567888876642 22 367889999999887521 1122 22 233445554433223 3479999999999
Q ss_pred HHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHhccccccc---cc--c---CccceeEEeecCCCCCccCCCCC-CCC
Q 013521 147 DISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFL---KE--T---GKYRNIVYMNCRPENNFFPDLST-TSR 214 (441)
Q Consensus 147 al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~---~~--~---~~~~~v~~v~~~~~~~~~~~~~~-~~~ 214 (441)
|... + .........|+...-+|++....+.......... +. . ....++..++..+...+...++. ..+
T Consensus 121 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 200 (428)
T PRK12389 121 AVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDE 200 (428)
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCc
Confidence 9886 4 2223345688888999999754443322110000 00 0 00012223332211000000111 134
Q ss_pred ccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 215 TDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 215 ~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
+.+|+ ..| +.-.|.+. |.+.+++|.++|++||+++|.||++..| ..+.......+.-.+| +-+++|.+| .|
T Consensus 201 vaavi-~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PD----ivt~gK~lg-gG 273 (428)
T PRK12389 201 VAAVL-VEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPD----LTALGKIIG-GG 273 (428)
T ss_pred EEEEE-EeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCC----eeeechhhc-CC
Confidence 55544 455 66678654 6889999999999999999999999876 2211111111222344 347899998 88
Q ss_pred ceeEEEEeeccccccCCchhHHHHHH---HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh--
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFNR---IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-- 367 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-- 367 (441)
+.+|.+++++++. +.+.. .....+++.++++..++.+.|+.-.. +...++.++.-+++.+.|++
T Consensus 274 ~Pi~av~~~~~i~--------~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~ 342 (428)
T PRK12389 274 LPIGAYGGRKDIM--------EQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQ---EGVYEKLDRLGAMLEEGILEAA 342 (428)
T ss_pred CceeEEeEHHHHH--------hhhccCCCcccccCCccCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887763 33321 11223344678888888887762111 22444555555566555554
Q ss_pred --CCC--eeeCCCCceEEEEEcC--CC---------C---hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHH
Q 013521 368 --LGL--KVNGGKNAPYVWVQFP--GS---------S---SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREY 429 (441)
Q Consensus 368 --~g~--~~~~~~~~~~~~~~~~--~~---------~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~ 429 (441)
+++ .+... .|++ -+.+. .. + ...+...++ ++||.+.|.. .+.+.+++..++++
T Consensus 343 ~~~~~~~~v~r~-~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~l~~t~e~ 413 (428)
T PRK12389 343 EKHGITITINRL-KGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLML-NQGINLAPSK------YEAWFLTTAHTEED 413 (428)
T ss_pred HhCCCCEEEEec-CcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHH-HCCcEeecCC------CCCeeecCCCCHHH
Confidence 343 22222 3432 23332 10 1 123445544 4699998742 12356777779999
Q ss_pred HHHHHHHHHhhC
Q 013521 430 ISEACRRLKNFL 441 (441)
Q Consensus 430 ~~~~l~~l~~~l 441 (441)
+++++++|.+++
T Consensus 414 id~~~~~l~~~l 425 (428)
T PRK12389 414 IEETLEAVDRAF 425 (428)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-13 Score=130.74 Aligned_cols=338 Identities=11% Similarity=0.068 Sum_probs=193.4
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..|- ..+ ..+|.+.+++.+.+.+... .....| ......+|.+.+++. .+...+.+++++++++
T Consensus 42 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~-~~~~~~~lae~L~~~----~p~~~~~v~f~~sGse 115 (429)
T PRK06173 42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSH-IMFGGF-THEPAVELAQKLLEI----LPPSLNKIFFADSGSV 115 (429)
T ss_pred CCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCC-cccccc-CCHHHHHHHHHHHhh----CCCCcCEEEEeCCchH
Confidence 456788886653 222 3578999999998876421 011112 222334444444443 2333469999999999
Q ss_pred HHHH-HH--Hhc-----CC-CCEEEEeCCCchhhHhHHHHh-cc----ccccccccCccceeEEeecCCCC---Ccc---
Q 013521 147 DISR-LQ--MLL-----GS-NVTVAVQDPSFPAYIDTSVIV-GQ----AGKFLKETGKYRNIVYMNCRPEN---NFF--- 206 (441)
Q Consensus 147 al~~-l~--~l~-----~~-gd~Vlv~~p~y~~~~~~~~~~-g~----~~~~~~~~~~~~~v~~v~~~~~~---~~~--- 206 (441)
|+.. +. ... ++ ..+|+....+|++........ +. ++.+.+.. ..+..+|..... .+.
T Consensus 116 Ave~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~ 192 (429)
T PRK06173 116 AVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSL---PVQYFLPQPSIKFGEEWNDEA 192 (429)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccC---CCCeEeCCCCcccchhHHHHH
Confidence 9886 42 222 13 357888999999853222211 21 11111000 112233321100 000
Q ss_pred C-----CCCC-CCCccEEEEcCC--CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcce
Q 013521 207 P-----DLST-TSRTDIIFFCSP--NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV 277 (441)
Q Consensus 207 ~-----~~~~-~~~~~~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
. .++. .+++.+|++ .| +.-.|.. .|++.+++|.++|++||+++|.||++..|...+.......+.-.+|
T Consensus 193 l~~l~~~i~~~~~~iAAvi~-EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PD- 270 (429)
T PRK06173 193 IEPLQDLLEQKGDEIAALIL-EPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPD- 270 (429)
T ss_pred HHHHHHHHHhCCCcEEEEEE-cchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCC-
Confidence 0 0111 245666554 55 6666765 7899999999999999999999999976533332211222222344
Q ss_pred eEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH-----HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHH
Q 013521 278 AIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR-----IVCTCFNGASNIVQAGGLACLSPDGFQALRTVI 351 (441)
Q Consensus 278 ~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 351 (441)
|+ +|+|.++ .| +.++.+++++++. +.+.. .....+...++++..++.+.|+.-.. +..+
T Consensus 271 -iv--~~gK~l~-gG~~p~~a~~~~~~i~--------~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~---~~~~ 335 (429)
T PRK06173 271 -IM--CIGKALT-GGYLTLSATITTEAIA--------QTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLE---SPWQ 335 (429)
T ss_pred -EE--Eeehhhh-CCccccceEEecHHHH--------HHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh---CCHH
Confidence 33 3999997 77 4788888877662 33321 11222334677887777777752111 2345
Q ss_pred HHHHHHHHHHHHHHHhC-CCeeeCC--CCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eec
Q 013521 352 DYYKENAKIIVDAFQSL-GLKVNGG--KNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFG 425 (441)
Q Consensus 352 ~~~~~~~~~l~~~L~~~-g~~~~~~--~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~ 425 (441)
++.+++-+.+.+.|++. +...... ..|+.+-+.+... ....+...++ ++||.+.+. + +.|||. +..
T Consensus 336 ~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~~~~i~~~l~-e~Gi~v~~~------g-~~l~~~Ppl~i 407 (429)
T PRK06173 336 QNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVNMATLQPRFV-EHGIWVRPF------G-KLVYIMPPFII 407 (429)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcccHHHHHHHHH-HCCeEEEec------C-CEEEEeCCccC
Confidence 66666777777777654 3322111 2467777777532 2345555555 459999763 1 479998 566
Q ss_pred CHHHHHHHHHHHHhhC
Q 013521 426 HREYISEACRRLKNFL 441 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~l 441 (441)
+++++++++++|.+++
T Consensus 408 t~~ei~~~~~~l~~~l 423 (429)
T PRK06173 408 SPDELSQLTSGLLRVL 423 (429)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999998864
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-12 Score=120.64 Aligned_cols=327 Identities=13% Similarity=0.128 Sum_probs=197.6
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccC-CCC---CCCCCCCcCcHHHHHHHHHHHhhhCCCCC-CcEEEcCC-cHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALST-VKG---YKGYGAEQGNMALRTAIADKFYKDMGIEG-DEIFISDG-AQSD 147 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~-~~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G-~~~a 147 (441)
.++|+-|. -..|++|++++++.+.++.. .-+ +.+++ +-..++-+.+-+.|++.++++. .+|++.+| ++.+
T Consensus 5 ~~nF~aGP--a~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs--~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~ 80 (364)
T PRK12462 5 QLNFSGGP--GALPDTVLEQVRQAVVELPETGLSVLGMSHRS--SWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQ 80 (364)
T ss_pred cceecCCC--cCCCHHHHHHHHHHHhcccccCcccccccccc--HHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHH
Confidence 56777774 34688999999988876532 011 23332 3345555555555666667743 36665555 7888
Q ss_pred HHH-HHHhcCCCCEEE-EeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCc--cCC---CCCCCCccEE
Q 013521 148 ISR-LQMLLGSNVTVA-VQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF--FPD---LSTTSRTDII 218 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vl-v~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~--~~~---~~~~~~~~~v 218 (441)
++. ++.++.+||+++ +..-++++- ...++.+| ++..+......++ .++ +...++.+.|
T Consensus 81 ~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-------------~v~~~~~~~~~~~~~~p~~~~~~~~~d~~~v 147 (364)
T PRK12462 81 FSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-------------AMRVVWDGAASGYRTLPSLAELDWDARAPFR 147 (364)
T ss_pred HHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-------------CceEecCcCCCCCCcCCCHHHhccCCCCcEE
Confidence 887 688999999665 555666663 33333344 2222221111111 222 2223467888
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++|+-...||+.++ ++.+.++.++|+|.+-+-+ ..|..+..+ .++..+..|.+|.|| ++.+
T Consensus 148 ~~t~NETstGv~~~--------~~~~~~~~llvvD~sS~~~---s~pid~~~~------dvi~agsQKnlgP~G--ltvv 208 (364)
T PRK12462 148 HYVSNETVEGLQFP--------DAAGLPDSPLIADMSSDFM---SRPFDVEAY------GMVYAHAQKNLGPAG--VTVA 208 (364)
T ss_pred EEccCCCCceEecC--------cccccCCCeEEEEcCchhh---CCCCChHHc------cEEEeeccccCCCCc--eEEE
Confidence 88877889999987 2233468999999887632 113333222 378889999999776 7888
Q ss_pred EeeccccccCC---chhHHHHHHHH-hhhcCCCcHHHHHHHHHhcCCCcHH--HHHHHHHHHHHHHHHHHHHHHhCC-Ce
Q 013521 299 VVPEELRYSNG---YPVIKDFNRIV-CTCFNGASNIVQAGGLACLSPDGFQ--ALRTVIDYYKENAKIIVDAFQSLG-LK 371 (441)
Q Consensus 299 ~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~~ 371 (441)
+++++.+.... +.+.+...... ...+++++.....++...++--..+ .++.+.++.+++.+.+++.+++.. +.
T Consensus 209 ivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~ 288 (364)
T PRK12462 209 IIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVI 288 (364)
T ss_pred EECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 89988873311 11211111111 1234455555555444443311112 357888888899999999999873 43
Q ss_pred eeC----CCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 372 VNG----GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 372 ~~~----~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
... ..+-+.+.+++++...++.+.+.++++|+.-..|+. .-+.+|+|+++ +.+.++.+++-|+++
T Consensus 289 ~~~~~~~~RS~mnv~f~~~~~~l~~~f~~~a~~~gl~~lkGhr----~vgg~Ras~yna~~~e~v~~L~~fm~~f 359 (364)
T PRK12462 289 DCHAHRAARSTMNVAFRFRQPRLDTLFKEQSTEAGFCGLSGHR----SIGGIRASLYNAVSEQAVSRLCAFLKDF 359 (364)
T ss_pred cCCCChhhcCcceEEEEcCCHHHHHHHHHHHHHCCCccccCCc----ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 321 124566888886443344445556667998877753 23569999855 789999999888764
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-12 Score=127.48 Aligned_cols=308 Identities=15% Similarity=0.099 Sum_probs=190.9
Q ss_pred CCCCCcCcHHHHHHHHHHHhhhCCCCCC-------cEEEcCCcHHHHHH-HHH----hcC-------CCCEEEEeCCCch
Q 013521 109 GYGAEQGNMALRTAIADKFYKDMGIEGD-------EIFISDGAQSDISR-LQM----LLG-------SNVTVAVQDPSFP 169 (441)
Q Consensus 109 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-------~I~~t~G~~~al~~-l~~----l~~-------~gd~Vlv~~p~y~ 169 (441)
.|...+...++.+.+.+|+.+.++.+.+ .-++|+|++++... +.. .++ +.-.|++.+-+|.
T Consensus 113 ~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~ 192 (490)
T PLN02880 113 SWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHS 192 (490)
T ss_pred ccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchH
Confidence 4444557889999999999887776643 36788888887543 311 121 1124666888899
Q ss_pred hhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----------CCCccEEEEcCCCCccccCCCHHHHHH
Q 013521 170 AYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----------TSRTDIIFFCSPNNPTGHAATWQQLKK 238 (441)
Q Consensus 170 ~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----------~~~~~~v~i~~p~NPtG~~~~~~~~~~ 238 (441)
++..++..+|... -.++.||++.++++..+.+. ...+-+|+-+-...+||.+-| +++
T Consensus 193 Sv~Kaa~~lGlg~---------~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~e 260 (490)
T PLN02880 193 ALQKACQIAGIHP---------ENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLE 260 (490)
T ss_pred HHHHHHHHcCCCH---------HHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHH
Confidence 9999999999411 14788888754343444221 112344444455889999999 889
Q ss_pred HHHHHHHcCcEEEEcccccccccCCCCCccc-ccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHH
Q 013521 239 LVEFAKANGSIIVYDSAYAAYITDPSPRSIY-EIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFN 317 (441)
Q Consensus 239 i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~-~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 317 (441)
|+++|++||+++.+|.+|+.+.... + ... .+.+...-..+..+++|+++ ....+|.+.+++.... ...+.
T Consensus 261 I~~i~~~~~iwlHVDaA~gg~~~~~-~-~~~~~l~gie~aDSit~d~HKwl~-~P~~~g~llvr~~~~l------~~~~~ 331 (490)
T PLN02880 261 LGKIAKSNGMWFHVDAAYAGSACIC-P-EYRHYIDGVEEADSFNMNAHKWFL-TNFDCSLLWVKDRNAL------IQSLS 331 (490)
T ss_pred HHHHHHHcCCEEEEehhhHHHHHhC-H-HHHHHhcCchhcCEEEECchhhcC-CCccEEEEEEeCHHHH------HHHHc
Confidence 9999999999999999999754321 1 010 12222223477889999995 8889999998753310 01110
Q ss_pred H---HHhh--------------hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCce
Q 013521 318 R---IVCT--------------CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAP 379 (441)
Q Consensus 318 ~---~~~~--------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 379 (441)
. +... .......+.....-..++..|.+.++++.++.-+.++++.+.|++. ++++..++...
T Consensus 332 ~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~ 411 (490)
T PLN02880 332 TNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFS 411 (490)
T ss_pred cCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceE
Confidence 0 0000 0000111111112122333455555666666668889999999876 88887766666
Q ss_pred EEEEEcCCC--Ch-------HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec---CHHHHHHHHHHHHhh
Q 013521 380 YVWVQFPGS--SS-------WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG---HREYISEACRRLKNF 440 (441)
Q Consensus 380 ~~~~~~~~~--~~-------~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~---~~~~~~~~l~~l~~~ 440 (441)
.+.+++++. +. .++.+++.++..+.+.+.. + .+..++|+++.+ ++++++.+++.|.++
T Consensus 412 iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~-~--~g~~~lR~~~~n~~tt~~di~~~~~~i~~~ 481 (490)
T PLN02880 412 LVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTV-L--SGKYVLRFAVGAPLTEERHVTAAWKVLQDE 481 (490)
T ss_pred EEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEE-E--CCEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 788887531 11 2355566655566665432 2 346799999733 579999999988764
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-12 Score=125.48 Aligned_cols=338 Identities=14% Similarity=0.105 Sum_probs=189.2
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|. ..+ ..+|.+.+++.+.+.+... ....| . .+.+..+|+.+.+..+-..+.+++++++++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~--~~~~~-~----~~~~~~lae~L~~~~p~~~~~v~f~~SGsE 123 (451)
T PRK06062 51 EGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCT--VAPAH-A----NDARSEAARLIAERAPGDLSKVFFTNGGAD 123 (451)
T ss_pred CCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCC--cCCcc-C----CHHHHHHHHHHHHhCCCCCCEEEEcCChHH
Confidence 466788887664 222 3678899999998876421 11122 2 233444555554322333469999999999
Q ss_pred HHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCC--Cc------------cCCC
Q 013521 147 DISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN--NF------------FPDL 209 (441)
Q Consensus 147 al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~--~~------------~~~~ 209 (441)
|... + ........+|+...-+|++....+..................+..++..... .+ ..++
T Consensus 124 Ave~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 203 (451)
T PRK06062 124 ANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHL 203 (451)
T ss_pred HHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHH
Confidence 9886 4 2223344678889999999754444332110000000000012222211100 00 0001
Q ss_pred CC------CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEE
Q 013521 210 ST------TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEI 281 (441)
Q Consensus 210 ~~------~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i 281 (441)
++ ..++.+|+ ..| +.--|.+ .|.+.+++|.++|++||+++|.||++..|...+.......+.-.|| +
T Consensus 204 e~~l~~~~~~~iAavi-iEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PD----i 278 (451)
T PRK06062 204 ERVIELEGPSTIAAIL-LESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPD----L 278 (451)
T ss_pred HHHHHhcCCCceEEEE-EccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCC----e
Confidence 10 13455555 456 5445766 5789999999999999999999999987643332111112222345 4
Q ss_pred ecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHH--HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNR--IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENA 358 (441)
Q Consensus 282 ~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 358 (441)
.+|+|.+| .|+ .+|.+++++++. +.+.. +....+++.++++..++.+.|+.-.. +.+.++.++.-
T Consensus 279 ~t~gK~lg-gG~~Pigav~~~~~i~--------~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~---~~l~~~~~~~G 346 (451)
T PRK06062 279 ITFAKGVN-SGYVPLGGVAISEAIA--------ATFADRPYPGGLTYSGHPLACAAAVATINAMEE---EGIVENAARIG 346 (451)
T ss_pred eeechhhh-cCCcCcEEEEEcHHHH--------HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHH
Confidence 46899998 784 899999888763 33321 11222445678888888888762111 22334444443
Q ss_pred -HHHHHHHHhC----CC--eeeCCCCceEEEEEcCC--C-------------ChHHHHHHHHHhcCeEEeCCCCcCCCCC
Q 013521 359 -KIIVDAFQSL----GL--KVNGGKNAPYVWVQFPG--S-------------SSWDVFAEILEKTHILTIPGSGFGPGGN 416 (441)
Q Consensus 359 -~~l~~~L~~~----g~--~~~~~~~~~~~~~~~~~--~-------------~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 416 (441)
+++.+.|+++ ++ .+. .-|.++-+++.. . ....+...++ ++||.+.+. .
T Consensus 347 ~~~l~~~L~~l~~~~~~v~~vr--G~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gvl~~~~-------~ 416 (451)
T PRK06062 347 AEVLGPGLRELAERHPSVGEVR--GLGVFWALELVADRETREPLAPYGASSAAMAAVKAACK-ERGLLPFVN-------G 416 (451)
T ss_pred HHHHHHHHHHHHhcCCcEEeEe--ccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHH-HCCcEEeec-------C
Confidence 3444444442 32 222 245555555521 0 0123445555 559998652 2
Q ss_pred CeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 417 EHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 417 ~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
+.+||+- ..+++++++++++|.+++
T Consensus 417 ~~lrl~ppl~~t~~eid~~~~~l~~~l 443 (451)
T PRK06062 417 NRIHVVPPCTVTEDEVREGLAILDAAL 443 (451)
T ss_pred CEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 4689984 569999999999998764
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-13 Score=129.76 Aligned_cols=337 Identities=10% Similarity=0.025 Sum_probs=191.5
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..|. ..+ ..+|.+.+++.+.+.+... .....+ ..+.+..+|+.|.+..+...+.+++++++++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~-~~~~~~-----~~~~~~~la~~L~~~~p~~~~~v~f~~SGsE 114 (428)
T PRK07986 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGI-----THPPAIELCRKLVAMTPQPLECVFLADSGSV 114 (428)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCC-cccccc-----CCHHHHHHHHHHHhhCCCCcCEEEEeCCcHH
Confidence 356788887663 222 3578899999998875421 011111 1234555666654433333478999999999
Q ss_pred HHHH-HH--Hhc-----CCCCEEEEeCCCchhhHhHHHHh-cccc----ccccccCccceeEEeecCCCC---Cc----c
Q 013521 147 DISR-LQ--MLL-----GSNVTVAVQDPSFPAYIDTSVIV-GQAG----KFLKETGKYRNIVYMNCRPEN---NF----F 206 (441)
Q Consensus 147 al~~-l~--~l~-----~~gd~Vlv~~p~y~~~~~~~~~~-g~~~----~~~~~~~~~~~v~~v~~~~~~---~~----~ 206 (441)
|+.. +. ... ....+|+....+|++....+... +... .+.+.. ..+..++..... .+ .
T Consensus 115 Ave~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~d~ 191 (428)
T PRK07986 115 AVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYL---PENLFAPAPQSRFDGEWDERDI 191 (428)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCC---CCCEEECCCCcccchhhHHHHH
Confidence 9886 42 222 23468999999999854332222 2100 000000 112222221100 00 0
Q ss_pred CCCC----C-CCCccEEEEcCC--CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCccee
Q 013521 207 PDLS----T-TSRTDIIFFCSP--NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVA 278 (441)
Q Consensus 207 ~~~~----~-~~~~~~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~ 278 (441)
.+++ . ..++.+|+ ..| +.-.|.. .+++.+++|.++|++||+++|.||++..|...+.........-.+|
T Consensus 192 ~~l~~~l~~~~~~iaavi-~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PD-- 268 (428)
T PRK07986 192 APFARLMAAHRHEIAAVI-LEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPD-- 268 (428)
T ss_pred HHHHHHHHhCCCcEEEEE-EechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCC--
Confidence 0111 1 13444544 455 4445654 4679999999999999999999999976533332211122221344
Q ss_pred EEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH-----HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHH
Q 013521 279 IEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI-----VCTCFNGASNIVQAGGLACLSPDGFQALRTVID 352 (441)
Q Consensus 279 i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 352 (441)
|+ +++|.++ .| +.+|.+++++++. +.+... ....+++.++++..++.+.|+.-.. +...+
T Consensus 269 i~--t~gK~l~-gG~~p~~av~~~~~i~--------~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~---~~~~~ 334 (428)
T PRK07986 269 IL--CLGKALT-GGTMTLSATLTTREVA--------ETISNGEAGCFMHGPTFMGNPLACAVANASLSLLES---GDWQQ 334 (428)
T ss_pred EE--Eechhhh-CCcccCcchhchHHHH--------HHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh---CCHHH
Confidence 33 5899997 78 5888888887763 333321 1222334677888777777752111 23355
Q ss_pred HHHHHHHHHHHHHHhC-C---CeeeCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eec
Q 013521 353 YYKENAKIIVDAFQSL-G---LKVNGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFG 425 (441)
Q Consensus 353 ~~~~~~~~l~~~L~~~-g---~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~ 425 (441)
+.+++-+++.+.|+++ . +.-.. ..|.++-+.+.. .....+...++ ++||.+.+. .+.+|+. +..
T Consensus 335 ~~~~~g~~l~~~l~~l~~~~~i~~vR-g~Gl~~~ve~~~~~~~~~~~~~l~-~~Gl~~~~~-------g~~i~~~Ppl~i 405 (428)
T PRK07986 335 QVAAIEAQLREELAPLRDAPMVADVR-VLGAIGVVETTRPVNMAALQRFFV-EQGVWIRPF-------GKLIYLMPPYII 405 (428)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEeEe-ccceEEEEEeCCcccHHHHHHHHH-HCCcEEEec-------CCEEEEeCCCCC
Confidence 5555666666666654 1 21111 236666677752 22345555555 559999763 1479996 677
Q ss_pred CHHHHHHHHHHHHhhC
Q 013521 426 HREYISEACRRLKNFL 441 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~l 441 (441)
+++++++++++|.+++
T Consensus 406 t~~ei~~~~~~l~~~l 421 (428)
T PRK07986 406 LPEQLQRLTAAVNRAV 421 (428)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998764
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-12 Score=125.24 Aligned_cols=340 Identities=14% Similarity=0.122 Sum_probs=189.1
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|- ..+ ..+|.+.+++.+.+.++..... .++. .+.+..+|+.+.+..+-..+.+.+++++++|
T Consensus 45 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~-~~~~-----~~~~~~la~~l~~~~p~~~~~v~f~~sGseA 118 (442)
T PRK13360 45 GRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPA-FQMG-----HPKAFELANRIAEIAPGGLNHVFFTNSGSES 118 (442)
T ss_pred CCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCccc-CCcC-----CHHHHHHHHHHHHhCCCCCCEEEEeCCcHHH
Confidence 45678876553 122 3678899999999876431111 1121 2334445555543223234689999999999
Q ss_pred HHH-HH--HhcC-----C-CCEEEEeCCCchhhHhHHHH-hccccccccccCccceeEEeecCCC---CCcc--------
Q 013521 148 ISR-LQ--MLLG-----S-NVTVAVQDPSFPAYIDTSVI-VGQAGKFLKETGKYRNIVYMNCRPE---NNFF-------- 206 (441)
Q Consensus 148 l~~-l~--~l~~-----~-gd~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~v~~v~~~~~---~~~~-------- 206 (441)
+.. +. .... + ..+|+....+|++....+.. .|....-.........+..+|.... ..+.
T Consensus 119 ~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 198 (442)
T PRK13360 119 VDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGA 198 (442)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHH
Confidence 885 42 2221 2 35799999999996433222 2211000000000012233332210 0010
Q ss_pred ---CCCCC------CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCc
Q 013521 207 ---PDLST------TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR 275 (441)
Q Consensus 207 ---~~~~~------~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~ 275 (441)
.++++ ..++.+|+ ..| +...|.. .+.+.+++|.++|++||+++|.||++..|...+.........-.|
T Consensus 199 ~~~~~le~~l~~~~~~~~aavi-vEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~P 277 (442)
T PRK13360 199 ELADELERLVTLHDASTIAAVI-VEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTP 277 (442)
T ss_pred HHHHHHHHHHHhcCCCcEEEEE-EccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCC
Confidence 01111 13444544 566 5556765 578899999999999999999999997664333221111222234
Q ss_pred ceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH-------HHhhhcCCCcHHHHHHHHHhcCCCcHHHH
Q 013521 276 EVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR-------IVCTCFNGASNIVQAGGLACLSPDGFQAL 347 (441)
Q Consensus 276 ~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 347 (441)
| +-+|+|.++ .| +.+|.+++++++. +.+.. .....+.+.+++...++.+.++.-..
T Consensus 278 D----ivt~gK~l~-gG~~P~gav~~~~~i~--------~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~--- 341 (442)
T PRK13360 278 D----LLTCAKGLT-NGAIPMGAVFVSSEIH--------DAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYER--- 341 (442)
T ss_pred c----eeeeeeccc-cCccceEEEEEcHHHH--------HHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHh---
Confidence 4 337899997 66 7899998887763 22221 11122344677888777777752111
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CeeeC--CCCceEEEEEcCC---C---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCe
Q 013521 348 RTVIDYYKENAKIIVDAFQSLG-LKVNG--GKNAPYVWVQFPG---S---SSWDVFAEILEKTHILTIPGSGFGPGGNEH 418 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~g-~~~~~--~~~~~~~~~~~~~---~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~ 418 (441)
+.+.++.+++.+++.+.|+++. ..... ...|.+.-+.+.. . ...++...+++ +||.+.+. .+.
T Consensus 342 ~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~-------~~~ 413 (442)
T PRK13360 342 EGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFE-KGLMIRYT-------GDI 413 (442)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHH-CCcEEEec-------CCE
Confidence 2345566666667777776541 11111 1124443344421 1 12345566555 59999763 246
Q ss_pred EEEE--eecCHHHHHHHHHHHHhhC
Q 013521 419 IRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 419 iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+||+ +..+++++++++++|.+++
T Consensus 414 lr~~Ppl~~t~~eid~~~~~l~~~l 438 (442)
T PRK13360 414 LALSPPLIIEEAQIDELFDILAQAL 438 (442)
T ss_pred EEEeCCCccCHHHHHHHHHHHHHHH
Confidence 9999 5669999999999998764
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-11 Score=122.62 Aligned_cols=348 Identities=10% Similarity=0.039 Sum_probs=193.1
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|- ..+ ..+|.+.+++++.+.+... .....|. .+.+..+|+.+....+-..+.+++++++++
T Consensus 29 dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~-~~~~~~~-----~~~~~~lae~L~~~~p~~~~~v~f~~sGsE 102 (447)
T PRK06917 29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSF-VYRSQFT-----SEPAEKLAKKLSDLSPGDLNWSFFVNSGSE 102 (447)
T ss_pred CCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcC-ccccccC-----CHHHHHHHHHHHHhCCCCCCEEEEeCChHH
Confidence 456788887663 222 3679999999999876321 1111232 234445555554323333368999999999
Q ss_pred HHHH-HHHh--c------CCCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCCC--ccC-------
Q 013521 147 DISR-LQML--L------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPENN--FFP------- 207 (441)
Q Consensus 147 al~~-l~~l--~------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~~--~~~------- 207 (441)
|+.. +... . ....+|+....+|++....+........... .......+..++...... +..
T Consensus 103 Ave~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 182 (447)
T PRK06917 103 ANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQL 182 (447)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHH
Confidence 9886 4222 1 1236799999999997544433221100000 000000112222110000 000
Q ss_pred ----CCC----C--CCCccEEEEcCC-C-Ccccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCC
Q 013521 208 ----DLS----T--TSRTDIIFFCSP-N-NPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGA 274 (441)
Q Consensus 208 ----~~~----~--~~~~~~v~i~~p-~-NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~ 274 (441)
.++ . .+++.+|+ ..| + |--|. ..|.+.+++|.++|++||+++|.||++..|...+.......+.-.
T Consensus 183 ~~~~~le~~i~~~~~~~iAAvi-~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~ 261 (447)
T PRK06917 183 ACATELETAIERIGAEHIAAFI-AEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVE 261 (447)
T ss_pred HHHHHHHHHHHhcCCCceEEEE-EeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCC
Confidence 011 1 12455555 466 3 33344 467999999999999999999999999865433322111223223
Q ss_pred cceeEEEecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHH----HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHH
Q 013521 275 REVAIEISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNR----IVCTCFNGASNIVQAGGLACLSPDGFQALRT 349 (441)
Q Consensus 275 ~~~~i~i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 349 (441)
|| +-+++|.++ .|+ .+|.+++++++. +.+.. +....+.+.++++..++.+.++.-.. +.
T Consensus 262 PD----i~~~gK~l~-~G~~Pi~a~~~~~~i~--------~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~---~~ 325 (447)
T PRK06917 262 PD----IMTLGKGLG-AGYTPIAATVVSDRVM--------EPILRGSRSIMSGHTLSANPLSAATALAVLEYMEK---HN 325 (447)
T ss_pred CC----EEEeeehhc-cCCcceEEEEEcHHHH--------HHHhccCcccccccCCCCCHHHHHHHHHHHHHHHH---CC
Confidence 45 346899998 885 899999988773 33321 11122344678888888888762111 23
Q ss_pred HHHHHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCC-------C-C----hHHHHHHHHHhcCeEEeCCCC-cC
Q 013521 350 VIDYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPG-------S-S----SWDVFAEILEKTHILTIPGSG-FG 412 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-------~-~----~~~~~~~ll~~~gi~v~pg~~-f~ 412 (441)
+.++.++.-+.+.+.|+++ ++......-|.++.+++.. . . ...+...+++ +||.+.|... ..
T Consensus 326 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~~~~ 404 (447)
T PRK06917 326 LPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAK-NGLLLYPAVAGQD 404 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHh-CCcEEEecccccC
Confidence 4455555556666665543 3221111245566565521 0 1 1234455554 5999987421 11
Q ss_pred CCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 413 PGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 413 ~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
....+.+|++ +..+++++++++++|.+++
T Consensus 405 g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l 435 (447)
T PRK06917 405 GKEGDAVIIAPPMTITYSELDELLSIFAKSV 435 (447)
T ss_pred CCCCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 1124689998 5579999999999998764
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-12 Score=114.02 Aligned_cols=319 Identities=15% Similarity=0.135 Sum_probs=194.2
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHHHHH-HHHhcCCCCEEEE
Q 013521 86 IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSDISR-LQMLLGSNVTVAV 163 (441)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~al~~-l~~l~~~gd~Vlv 163 (441)
.|+.+.+|+.. +...+-.| ...++.+.+-+=++.-|..... -.++...++.+++. +..++.|||.|++
T Consensus 28 l~~~V~~A~~~--------~~lgh~sP--e~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv 97 (385)
T KOG2862|consen 28 LSGRVQEAMSR--------PSLGHMSP--EFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLV 97 (385)
T ss_pred CCHHHHHhhcC--------CccccCCH--HHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEE
Confidence 56766666655 33322222 2333333333222222343333 44455555778887 7889999999999
Q ss_pred eCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCCC-C---CCCCccEEEEcCCCCccccCCCHHHHH
Q 013521 164 QDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-S---TTSRTDIIFFCSPNNPTGHAATWQQLK 237 (441)
Q Consensus 164 ~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-~---~~~~~~~v~i~~p~NPtG~~~~~~~~~ 237 (441)
-.-+-++ +..+.+.+| ++|..++.+.......+. . ...+++++++++-...||+.-+ -++
T Consensus 98 ~~~G~wg~ra~D~~~r~g------------a~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~--~~~ 163 (385)
T KOG2862|consen 98 VSTGTWGQRAADCARRYG------------AEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQD--LLA 163 (385)
T ss_pred EEechHHHHHHHHHHhhC------------ceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccch--HHH
Confidence 7766655 356666677 588888887654433221 1 1378999999998889999876 244
Q ss_pred HHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc---CCc----
Q 013521 238 KLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS---NGY---- 310 (441)
Q Consensus 238 ~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~---~~~---- 310 (441)
.+-++|++|+.++++|.+-+- . +.+. .+| .++..+....-.|.+|.| ..++-+..++..++. .+.
T Consensus 164 ~~g~lc~k~~~lllVD~VaSl-g--gt~F---~mD-ewgVDvaytgSQKaL~aP-~GLsiisfS~ka~~~~~~rK~~~~~ 235 (385)
T KOG2862|consen 164 ISGELCHKHEALLLVDTVASL-G--GTEF---EMD-EWGVDVAYTGSQKALGAP-AGLSIISFSDKALEAIRDRKTKPVS 235 (385)
T ss_pred HHHHHhhcCCeEEEEechhhc-C--Cccc---eeh-hhcccEEEecchhhcCCC-CCcceeecCHHHHHHHhhccCCceE
Confidence 556778899999999998762 2 1122 233 245557777778999853 345556666655311 000
Q ss_pred ---hhHHHHHHHHh----hh-cCCCcH---HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC---
Q 013521 311 ---PVIKDFNRIVC----TC-FNGASN---IVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK--- 376 (441)
Q Consensus 311 ---~~~~~~~~~~~----~~-~~~~~~---~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--- 376 (441)
+.......+.. .. ..+++. .+..++++.+. .+.+++..++.++..+.++..|+++|++.....
T Consensus 236 ~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~---eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~ 312 (385)
T KOG2862|consen 236 FYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIA---EEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEEL 312 (385)
T ss_pred EEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhh
Confidence 00000000000 01 112332 23344444444 345688899999999999999999987664321
Q ss_pred -CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ec-CHHHHHHHHHHHHhhC
Q 013521 377 -NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FG-HREYISEACRRLKNFL 441 (441)
Q Consensus 377 -~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~-~~~~~~~~l~~l~~~l 441 (441)
.-....+.+| +.+-.+.+.+++..+++.+.-| .++..+..+||++ ++ +.+.++..++.|+.++
T Consensus 313 rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gg--lg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~al 380 (385)
T KOG2862|consen 313 RLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGG--LGPTVGKVFRIGLLGCNANVEYIDNVVELLKLAL 380 (385)
T ss_pred ccCcceeeecCCCCCHHHHHHHHHHhcCEEeccc--cCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHH
Confidence 1223456666 5677788999998877777544 3566688999995 22 6788888888887653
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.7e-12 Score=125.40 Aligned_cols=342 Identities=11% Similarity=0.058 Sum_probs=191.5
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|. ..+ ..+|.+.+++.+.+.+.........| ..+.+.++|+.|.+..+...+.+++++++++
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~-----~~~~~~~lae~L~~~~p~~~~~v~f~~SGse 120 (460)
T PRK06105 46 AGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHK-----SHGPVIDLAEKLVAMAPVPMSKVFFTNSGSE 120 (460)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeeccccc-----CCHHHHHHHHHHHHhCCCCCCEEEEeCCcHH
Confidence 356788887663 222 36789999999998763210111112 2234444555554433433468999999999
Q ss_pred HHHHHHHh---c----C-C-CCEEEEeCCCchhhHhHHHHhcc-ccccccccCccceeEEeecCCCCCc-----------
Q 013521 147 DISRLQML---L----G-S-NVTVAVQDPSFPAYIDTSVIVGQ-AGKFLKETGKYRNIVYMNCRPENNF----------- 205 (441)
Q Consensus 147 al~~l~~l---~----~-~-gd~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~v~~v~~~~~~~~----------- 205 (441)
|......+ . . + ..+|+...-+|++.......+.. .............+..++......+
T Consensus 121 Ave~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 200 (460)
T PRK06105 121 ANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFA 200 (460)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHH
Confidence 99863222 1 1 2 35788888899886533322211 1000000000011222222110000
Q ss_pred ---cCCCCC------CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCC
Q 013521 206 ---FPDLST------TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGA 274 (441)
Q Consensus 206 ---~~~~~~------~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~ 274 (441)
..+++. ..++.+|+ ..| +.--|.. .|++.++++.++|++||+++|.||++..|...+.......++-.
T Consensus 201 ~~~~~~le~~~~~~~~~~iAavI-vEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~ 279 (460)
T PRK06105 201 TRLANELEALILAEGPDTIAAFI-GEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIK 279 (460)
T ss_pred HHHHHHHHHHHHHcCCCceEEEE-EccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCC
Confidence 001111 13455544 466 6556765 58999999999999999999999999766443322222222223
Q ss_pred cceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH-------HhhhcCCCcHHHHHHHHHhcCCCcHHH
Q 013521 275 REVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI-------VCTCFNGASNIVQAGGLACLSPDGFQA 346 (441)
Q Consensus 275 ~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~ 346 (441)
|| |-+++|.++ .| +.+|.+++++++. +.+... ....+++.++++..++.+.|+.-..
T Consensus 280 PD----i~~~gK~lg-gG~~P~~av~~~~~i~--------~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~-- 344 (460)
T PRK06105 280 PD----ILVMSKQLS-SSYQPLSAVLMNEKVY--------DPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEE-- 344 (460)
T ss_pred CC----eeeeecccc-cCcccceEEEEcHHHH--------HHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHh--
Confidence 45 446899998 66 6899999988763 333211 1123445778888877777752111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCeeeCCCCceEEEEEcCCC-------C-----hHHHHHHHHHhcCeEEeCCCCc
Q 013521 347 LRTVIDYYKENAKIIVDAFQSL---GLKVNGGKNAPYVWVQFPGS-------S-----SWDVFAEILEKTHILTIPGSGF 411 (441)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~ll~~~gi~v~pg~~f 411 (441)
+++.+..++..+++.+.|+++ ++......-|.++-+++... + ...+...++ ++||.+.|.
T Consensus 345 -~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~-~~Gvl~~~~--- 419 (460)
T PRK06105 345 -RDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAH-EHGVISRAM--- 419 (460)
T ss_pred -ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHH-HCCeEEEec---
Confidence 234455555556666665543 22111112456655655210 0 123444444 569999773
Q ss_pred CCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 412 GPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 412 ~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+.+|++ +..+++++++++++|.+++
T Consensus 420 ----g~~i~l~Ppl~it~~eid~~~~~l~~~l 447 (460)
T PRK06105 420 ----GDTLAFCPPLIITAAQVDEMVDRFGRAL 447 (460)
T ss_pred ----CCEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 2479998 4458999999999998764
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-12 Score=127.38 Aligned_cols=340 Identities=13% Similarity=0.074 Sum_probs=191.9
Q ss_pred CCCCeEEeCCCC--CC-CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TT-QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~-~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..|- .. -..+|.+.+++.+.+.++.. .....+ .. +.+..+|+.+.+..+...+.+++++++++
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~-~~~~~~-~~----~~~~~lae~L~~~~p~~~~~v~f~~SGse 127 (460)
T PRK06916 54 NGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAH-STLLGL-AN----VPSILLAEKLIEVVPEGLKKVFYSDSGAT 127 (460)
T ss_pred CCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCC-cccccc-CC----HHHHHHHHHHHHhCCCCCCEEEEeCCcHH
Confidence 456788886653 22 24678899999999876431 111112 22 23334444443323333368999999999
Q ss_pred HHHH-HH--Hhc-----CC-CCEEEEeCCCchhhHhHHHHhccccccc-cccCccceeEEeecCCCCC--c--cC-----
Q 013521 147 DISR-LQ--MLL-----GS-NVTVAVQDPSFPAYIDTSVIVGQAGKFL-KETGKYRNIVYMNCRPENN--F--FP----- 207 (441)
Q Consensus 147 al~~-l~--~l~-----~~-gd~Vlv~~p~y~~~~~~~~~~g~~~~~~-~~~~~~~~v~~v~~~~~~~--~--~~----- 207 (441)
|... +. ... .+ ..+|+....+|++....+.......... ........+..+|...... + .+
T Consensus 128 Ave~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~ 207 (460)
T PRK06916 128 AVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVK 207 (460)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHH
Confidence 9886 42 111 12 3688999999999654333322111000 0000001222332211000 0 00
Q ss_pred ----C----CCC-CCCccEEEEcCC--CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCc
Q 013521 208 ----D----LST-TSRTDIIFFCSP--NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR 275 (441)
Q Consensus 208 ----~----~~~-~~~~~~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~ 275 (441)
. ++. .+++.+|++ .| +.-.|.+ .|++.++++.++|++||+++|.||++..|...+.......+.-.|
T Consensus 208 ~~~~~l~~~l~~~~~~iAAvi~-EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~P 286 (460)
T PRK06916 208 KHLEELEELLKEKHEEIAAIIV-EPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTP 286 (460)
T ss_pred HHHHHHHHHHHhCCCcEEEEEE-eccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCC
Confidence 0 111 145556554 55 5656765 699999999999999999999999987664333221222222234
Q ss_pred ceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH-------HHhhhcCCCcHHHHHHHHHhcCCCcHHHH
Q 013521 276 EVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR-------IVCTCFNGASNIVQAGGLACLSPDGFQAL 347 (441)
Q Consensus 276 ~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 347 (441)
| | -+++|.++ .| +.+|.+++++++. +.+.. .....+.+.++++..++.+.++.-..
T Consensus 287 D--i--v~~gK~l~-gG~~Pi~av~~~~ei~--------~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~--- 350 (460)
T PRK06916 287 D--I--MTAGKGLT-GGYLPIAITVTTDEIY--------NAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEK--- 350 (460)
T ss_pred C--e--eeeehhhh-cCccccceeeecHHHH--------HHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHh---
Confidence 5 2 35899998 88 5999999988773 32321 11222344678888888887752111
Q ss_pred HHHHHHHHHHHHHHHHHHHhC---C-CeeeCCCCceEEEEEcCCC--------C----hHHHHHHHHHhcCeEEeCCCCc
Q 013521 348 RTVIDYYKENAKIIVDAFQSL---G-LKVNGGKNAPYVWVQFPGS--------S----SWDVFAEILEKTHILTIPGSGF 411 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~---g-~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~ll~~~gi~v~pg~~f 411 (441)
+.+.++.++.-+++.+.|+++ . +.-.. .-|.++-+++... . ...+...++ ++||.+.|.
T Consensus 351 ~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vr-G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~--- 425 (460)
T PRK06916 351 TNLIEQVARKTEYVATQLEDLFALKHVGDIR-QLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSR-ELGMLTRPL--- 425 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhcCCCeEEee-cCCceeeEEeecccccccCCCchhhHHHHHHHHHH-HCCeEEEec---
Confidence 234455666666666666654 2 11112 2355555555310 0 123445555 459999773
Q ss_pred CCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 412 GPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 412 ~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+.+|+. +..+++++++++++|.++|
T Consensus 426 ----g~~l~~~Ppl~it~~~id~~~~~l~~~l 453 (460)
T PRK06916 426 ----GNTIVFMPPLASTIDELDEMLRILYKAI 453 (460)
T ss_pred ----CCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 1468887 5668999999999998764
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-12 Score=125.81 Aligned_cols=334 Identities=13% Similarity=0.071 Sum_probs=182.9
Q ss_pred CCCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH
Q 013521 69 HPDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ 145 (441)
Q Consensus 69 ~~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~ 145 (441)
..++.+||+..|.. .+ ..+|.+.+++++.+.+. ....+ +. +....+|+.+.+.++ .+.+.++++++
T Consensus 72 ~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~----~~~~~-~~----~~~~~lAe~l~~~~~--~~~v~F~nSGt 140 (453)
T PRK07046 72 VDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRG----LTTML-PS----EDAAWVGEELARRFG--LPYWQVATTAT 140 (453)
T ss_pred CCCCEEEEecccccccccCCCCHHHHHHHHHHHHhC----CCCCC-CC----HHHHHHHHHHHHHhC--CCEEEEECCHH
Confidence 34677899876642 22 36789999999988752 11222 22 333444444443233 57999999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHH---hccc---cccccccC-ccceeEEeecCCCCCccCCCCCCCCc
Q 013521 146 SDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVI---VGQA---GKFLKETG-KYRNIVYMNCRPENNFFPDLSTTSRT 215 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~---~g~~---~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~~~~~ 215 (441)
+|... + .......++|+...-+|++....... .+.. ........ ....+..++.++...+...+ ...++
T Consensus 141 EA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l-~~~~v 219 (453)
T PRK07046 141 DANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAAL-ADGDV 219 (453)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHh-CCCCe
Confidence 99875 3 23334457899899999996432211 1100 00000000 00112222221110110001 12455
Q ss_pred cEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccc
Q 013521 216 DIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 216 ~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
.+|+ ..| +.-.|.+ .+.+.++++.++|++||+++|.||+.. |..+- ......+.-.|| + -+++|.+| .|+
T Consensus 220 Aavi-~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~-Gg~~~~~gv~PD--i--~t~gK~lg-gG~ 291 (453)
T PRK07046 220 AAVL-AEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGP-GGYTRAHGLEPD--F--LVVGKPIA-GGV 291 (453)
T ss_pred EEEE-ECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCC-cchhHHhCCCcc--c--eeehhhhc-CCC
Confidence 5555 466 4334544 566899999999999999999999986 43221 111111222344 3 35899998 899
Q ss_pred eeEEEEeeccccccCCchhHHHHHHH---------HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 013521 294 RLGWTVVPEELRYSNGYPVIKDFNRI---------VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDA 364 (441)
Q Consensus 294 r~G~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (441)
.+|.+++++++. +.+... ....+++.++++..++.+.|+.-.. +...++.++.-+.+.+.
T Consensus 292 Pi~av~g~~~i~--------~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~---~~~~~~~~~~g~~l~~~ 360 (453)
T PRK07046 292 PCAVYGFSAELA--------ERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMT---EAAYAHMLALAARLAAG 360 (453)
T ss_pred cceeeeehHHHH--------HHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHH
Confidence 999999988873 333211 1112334678888888888762111 12233333344444444
Q ss_pred H----HhCCCeeeCCCCceEEEEEcC-C-C-C--------h----HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec
Q 013521 365 F----QSLGLKVNGGKNAPYVWVQFP-G-S-S--------S----WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG 425 (441)
Q Consensus 365 L----~~~g~~~~~~~~~~~~~~~~~-~-~-~--------~----~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~ 425 (441)
| .++++......-|..+.+.+. + . + + ..+...+++ +||.+.|. .+.++++...
T Consensus 361 L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~-------~~~~~~~p~~ 432 (453)
T PRK07046 361 LRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLN-RGVLITPF-------HNMMLVCPAT 432 (453)
T ss_pred HHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHH-CCCEEecc-------cCcEEEeCCC
Confidence 4 344543211112333344331 1 0 0 1 123444554 59999762 1357888777
Q ss_pred CHHHHHHHHHHHHhhC
Q 013521 426 HREYISEACRRLKNFL 441 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~l 441 (441)
++++++++++++.+++
T Consensus 433 t~~did~~~~~~~~~l 448 (453)
T PRK07046 433 TAADVDRLVAAFDACL 448 (453)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998763
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-12 Score=123.91 Aligned_cols=342 Identities=12% Similarity=0.076 Sum_probs=191.6
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..|. ..+ ..+|.+.+++.+.+.+.. ....+. ....+.+..+|+.+....+-..+.+++++++++
T Consensus 49 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~---~~~~~~--~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGse 123 (466)
T PRK07036 49 DGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLP---YYTPFG--DMTNAPAAELAAKLAELAPGDLNHVFLTTGGST 123 (466)
T ss_pred CCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCc---cccccc--ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchH
Confidence 456788887663 222 357889999999887532 111111 012334555666654433333468999999999
Q ss_pred HHHH-HH--Hhc----C-C-CCEEEEeCCCchhhHhHHHHhccccccc-cccCccceeEEeecCCCC----C-----cc-
Q 013521 147 DISR-LQ--MLL----G-S-NVTVAVQDPSFPAYIDTSVIVGQAGKFL-KETGKYRNIVYMNCRPEN----N-----FF- 206 (441)
Q Consensus 147 al~~-l~--~l~----~-~-gd~Vlv~~p~y~~~~~~~~~~g~~~~~~-~~~~~~~~v~~v~~~~~~----~-----~~- 206 (441)
|+.. +. ... . + ..+|+...-+|++....+.......... ........+..++..... + +.
T Consensus 124 Ave~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 203 (466)
T PRK07036 124 AVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCD 203 (466)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHH
Confidence 9886 42 111 1 2 3678888999999654333222111000 000000012222221100 0 00
Q ss_pred ---CCCC------CCCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc-ccCCC
Q 013521 207 ---PDLS------TTSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY-EIPGA 274 (441)
Q Consensus 207 ---~~~~------~~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~-~~~~~ 274 (441)
.+++ ..+++.+|++ .| +.-.|.. .|++.+++|.++|++||+++|.||+...|...+...... .+.-.
T Consensus 204 ~~~~~~~~~i~~~~~~~iAavi~-EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~ 282 (466)
T PRK07036 204 FLVDEFEDKILSLGADNIAAFIA-EPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQ 282 (466)
T ss_pred HHHHHHHHHHHHcCCCceEEEEE-eCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCC
Confidence 0011 1234555554 55 5556765 578899999999999999999999998664433222222 12223
Q ss_pred cceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH-------HHhhhcCCCcHHHHHHHHHhcCCCcHHH
Q 013521 275 REVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR-------IVCTCFNGASNIVQAGGLACLSPDGFQA 346 (441)
Q Consensus 275 ~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 346 (441)
|| |-+++|.++ .| +.+|.+++++++. +.+.. +....+++.++++..++.+.|+.-..
T Consensus 283 PD----ivt~gK~l~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~-- 347 (466)
T PRK07036 283 PD----IITFAKGLT-SGYQPLGAVIISERLL--------DVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMER-- 347 (466)
T ss_pred CC----EEEEccccc-cCccccEEEEEcHHHH--------HHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHh--
Confidence 45 346899998 78 5899999988873 33321 11222445678888888887762111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCeeeCCCCceEEEEEcCC-C-------C----hHHHHHHHHHhcCeEEeCCCCc
Q 013521 347 LRTVIDYYKENAKIIVDAFQSL---GLKVNGGKNAPYVWVQFPG-S-------S----SWDVFAEILEKTHILTIPGSGF 411 (441)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~-~-------~----~~~~~~~ll~~~gi~v~pg~~f 411 (441)
+++.+..++.-+++.+.|+++ ++......-|.++.+++.. . . ...+...++ ++||.+.|.
T Consensus 348 -~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~--- 422 (466)
T PRK07036 348 -EGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQ-ERGLLVRPL--- 422 (466)
T ss_pred -CCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHH-HCCcEEeec---
Confidence 234445555555555555443 3211111246666677631 0 0 123444444 459999763
Q ss_pred CCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 412 GPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 412 ~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+.+|++ +..+++++++++++|.+++
T Consensus 423 ----~~~~~l~Ppl~it~~~id~~~~~l~~al 450 (466)
T PRK07036 423 ----EHLCVLSPPLIITRAQIDEIVAILRAAI 450 (466)
T ss_pred ----CCEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence 1467888 5568999999999997753
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-11 Score=122.37 Aligned_cols=344 Identities=11% Similarity=0.084 Sum_probs=192.8
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|- ..+ ..+|.+.+++.+.+.+.... ....| ..+....+|+.+....+-..+.+++++++++
T Consensus 28 dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~-~~~~~-----~~~~~~~lae~L~~~~p~~~~~v~f~~sGsE 101 (443)
T PRK07483 28 TGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYA-HTSFF-----TTEPAEALADRLVAAAPAGLEHVYFVSGGSE 101 (443)
T ss_pred CCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCc-ccccc-----CCHHHHHHHHHHHHhCCCCCCEEEEcCCcHH
Confidence 356788887663 222 36788999999998753210 01112 1234445555554322323469999999999
Q ss_pred HHHH-HH--Hhc-----CCC-CEEEEeCCCchhhHhHHHHhcccc----ccccccCccceeEEeecCCCCCcc-------
Q 013521 147 DISR-LQ--MLL-----GSN-VTVAVQDPSFPAYIDTSVIVGQAG----KFLKETGKYRNIVYMNCRPENNFF------- 206 (441)
Q Consensus 147 al~~-l~--~l~-----~~g-d~Vlv~~p~y~~~~~~~~~~g~~~----~~~~~~~~~~~v~~v~~~~~~~~~------- 206 (441)
|... +. ... ++| .+|+...-+|++............ .+.+.. ..+..++........
T Consensus 102 Ave~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~ 178 (443)
T PRK07483 102 AVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLL---IEAHHVSPCYAYREQRAGESDE 178 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCC---CCCEEeCCCccccccccCCCHH
Confidence 9885 42 222 133 578888999998754333322110 000000 122223221100000
Q ss_pred -------CCCCC------CCCccEEEEcCC-CC-ccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc
Q 013521 207 -------PDLST------TSRTDIIFFCSP-NN-PTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE 270 (441)
Q Consensus 207 -------~~~~~------~~~~~~v~i~~p-~N-PtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~ 270 (441)
.+++. .+++.+|++ .| +- --| ...|++.+++|.++|++||+++|.||+...|...+.......
T Consensus 179 ~~~~~~~~~l~~~~~~~~~~~iAAviv-EPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~ 257 (443)
T PRK07483 179 AYGQRLADELEAKILELGPDTVAAFVA-ETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEE 257 (443)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEE-eCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhh
Confidence 01111 134555554 66 42 235 456788999999999999999999999987644332222222
Q ss_pred cCCCcceeEEEecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHH----HHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 271 IPGAREVAIEISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNR----IVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 271 ~~~~~~~~i~i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
+.-.|| |-+++|.++ .|+ .+|.+++++++. +.+.. .....+++.++++..++.+.++.-..
T Consensus 258 ~gv~PD----iv~~gK~l~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~- 323 (443)
T PRK07483 258 DGVAPD----LVTIAKGLG-AGYQPIGAVLASDRIY--------DAIADGSGFFQHGHTYLGHATACAAALAVQRVIAE- 323 (443)
T ss_pred cCCCCC----eeeehhhhc-cCccccEEEEEcHHHH--------HHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-
Confidence 222355 345799998 886 999999988773 33321 11223445688888888888762111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----CCCe-eeCCCCceEEEEEcCCC-------C-----hHHHHHHHHHhcCeEEeCC
Q 013521 346 ALRTVIDYYKENAKIIVDAFQS----LGLK-VNGGKNAPYVWVQFPGS-------S-----SWDVFAEILEKTHILTIPG 408 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~----~g~~-~~~~~~~~~~~~~~~~~-------~-----~~~~~~~ll~~~gi~v~pg 408 (441)
+.+.++.++.-+++.+.|++ ++.. -.. ..|.++-+++... + ...+...+++ +|+.+.+.
T Consensus 324 --~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vR-G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~ 399 (443)
T PRK07483 324 --DGLLANVRARGEQLRARLRERLGQHPHVGDIR-GRGLFVGVELVADRATKAPFDPALKLHARIKREAMA-RGLMVYPM 399 (443)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEe-ecccEEEEEEeecccccCCCCchhhHHHHHHHHHHH-CCcEEEec
Confidence 23444455555555555543 3321 122 2455555555210 0 1234555555 59999874
Q ss_pred CC-cCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 409 SG-FGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 409 ~~-f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.. ......+.+||. +..+++++++++++|.++|
T Consensus 400 ~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l 435 (443)
T PRK07483 400 GGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAI 435 (443)
T ss_pred CccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 21 111124689997 5669999999999998764
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-12 Score=125.11 Aligned_cols=313 Identities=15% Similarity=0.146 Sum_probs=173.5
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCC---CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEE
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYG---AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTV 161 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~---~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~V 161 (441)
+.|+.+.+++.+.+..+.+.. ..+. ...-...+++.+|++. |.+ ..+++++++.|+.++...+.+||+|
T Consensus 92 ~l~~~vieAv~~~~~~y~~l~--~~l~~g~~g~r~~~le~~lA~l~----gae--~alvv~sg~aAi~l~l~~l~~GdeV 163 (454)
T TIGR00474 92 PLAEEAIEAVTDAARGYSNLE--YDLETGKRGSRYSHVEGLLCELT----GAE--DALVVNNNAAAVLLALNTLAKGKEV 163 (454)
T ss_pred CCCHHHHHHHHHHHhcccchh--ccccccccchHHHHHHHHHHHHh----CCC--cEEEECCHHHHHHHHHHHhCCcCEE
Confidence 468999999999888654211 1111 0112467888888875 543 3456677777888755668999999
Q ss_pred EEeCCCch---hh---HhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCcc--c--c
Q 013521 162 AVQDPSFP---AY---IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPT--G--H 229 (441)
Q Consensus 162 lv~~p~y~---~~---~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPt--G--~ 229 (441)
++....|. +. .......| ++++.++.+.... ..+++. .+++++|++.+++||+ | .
T Consensus 164 Ivs~~e~v~~ggs~~i~~~~~~~G------------~~~~~v~~~~~~~-l~dle~aI~~~T~lv~~~h~sN~~~~G~~~ 230 (454)
T TIGR00474 164 IVSRGELVEIGGSFRIPDVMEQSG------------AKLVEVGTTNRTH-LKDYEDAITENTALLLKVHTSNYRIVGFTE 230 (454)
T ss_pred EECCChhhhhcchhhHHHHHHHcC------------CEEEEeCCCCCCC-HHHHHHhcCcCCEEEEEEccCcccccCCCC
Confidence 99887643 21 22344455 4777776543211 122222 4789999999999995 6 4
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEccccccccc------CCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYIT------DPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~------~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
..+ +++|+++|++||+++|+|...+-+.. ...| .+.... ..+..+++.|.+|.+| |...|+++++++
T Consensus 231 ~~d---l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p-~~~~~~-~~GaDiv~fSg~K~Lg--Gp~~G~i~g~~~ 303 (454)
T TIGR00474 231 EVS---IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEP-TVQEVI-AAGVDLVTFSGDKLLG--GPQAGIIVGKKE 303 (454)
T ss_pred CCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCc-ccccHh-HcCCCEEEecCccccC--CCeEEEEEECHH
Confidence 567 89999999999999999986443211 0111 111111 1233499999999986 335899999887
Q ss_pred ccccCCchhHHHHHH-HHhhhcCCCcHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHHHHHHHHHHHhC---CC-
Q 013521 304 LRYSNGYPVIKDFNR-IVCTCFNGASNIVQAGGLACLSP--------DGFQALRTVIDYYKENAKIIVDAFQSL---GL- 370 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~- 370 (441)
++..-. ...+.+ ++. .-.......+.+..+.+ .+.+.+....+..+++...+.+.|++. ++
T Consensus 304 ~i~~l~---~~~l~r~lr~---~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~ 377 (454)
T TIGR00474 304 LIERLK---KNPLTRALRV---DKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFE 377 (454)
T ss_pred HHHhhh---hchhHHHHhh---ChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCce
Confidence 742100 000111 110 00000111111111111 122333444556667788888888763 22
Q ss_pred -eeeCCC----Cc---------eEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHH
Q 013521 371 -KVNGGK----NA---------PYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACR 435 (441)
Q Consensus 371 -~~~~~~----~~---------~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~ 435 (441)
++.+.. +| .-+.++..+....++.+ .|++....|.. ...++.+.+.+-+ .+++++..++
T Consensus 378 ~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~-~lr~~~~~ii~-----r~~~~~~~ld~r~~~~~~~~~~~~ 451 (454)
T TIGR00474 378 LEIVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEA-RLRELPPPIIG-----RIEDDRFLLDLRTLLEDEEELLIE 451 (454)
T ss_pred EEEEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHH-HHhcCCCCEEE-----EEECCEEEEEeCcCCHHHHHHHHH
Confidence 222211 11 12334333334445544 45554422221 1235667777633 6788888887
Q ss_pred HH
Q 013521 436 RL 437 (441)
Q Consensus 436 ~l 437 (441)
+|
T Consensus 452 ~~ 453 (454)
T TIGR00474 452 AL 453 (454)
T ss_pred Hh
Confidence 76
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-12 Score=126.94 Aligned_cols=341 Identities=12% Similarity=0.025 Sum_probs=190.0
Q ss_pred CCCCeEEeCCCC---CCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD---TTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~---~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.+++++|+..|. +--..+|.+.+++.+.+.+... ....+.......++-+.+++. .+-.-+.+++++++++
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~----~~~~~~~v~f~~sGse 116 (427)
T TIGR00508 43 DGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSH--VMFGGFTHKPAIELCQKLVKM----TPNALDCVFLADSGSV 116 (427)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCC--ccccccCCHHHHHHHHHHHhh----CCCCCCEEEEeCCcHH
Confidence 356788887764 2124678999999998876431 111111222333444444443 2333469999999999
Q ss_pred HHHH-HHH---hc----CC-CCEEEEeCCCchhhHhHHHHh-cccccccc-ccCccceeEEeecCCC-C--Cc----cCC
Q 013521 147 DISR-LQM---LL----GS-NVTVAVQDPSFPAYIDTSVIV-GQAGKFLK-ETGKYRNIVYMNCRPE-N--NF----FPD 208 (441)
Q Consensus 147 al~~-l~~---l~----~~-gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~-~~~~~~~v~~v~~~~~-~--~~----~~~ 208 (441)
++.. +.. .. .+ ..+|+...-+|++....+... +....... .......+..++.... . .+ ..+
T Consensus 117 A~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 196 (427)
T TIGR00508 117 AVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITP 196 (427)
T ss_pred HHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHH
Confidence 8875 421 11 12 367999999999865433332 21100000 0000001111211000 0 00 011
Q ss_pred CC----C-CCCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEE
Q 013521 209 LS----T-TSRTDIIFFCSP--NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIE 280 (441)
Q Consensus 209 ~~----~-~~~~~~v~i~~p--~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~ 280 (441)
++ . .++..+|+ ..| +.--|. ..+.+.+++|.++|++||+++|+||++..+...+.......++-.+| |+
T Consensus 197 l~~~l~~~~~~vaavi-vEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pD--i~ 273 (427)
T TIGR00508 197 LAKLMELHSDEIAAVI-LEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPD--IL 273 (427)
T ss_pred HHHHHHhcCCcEEEEE-EechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCC--EE
Confidence 11 1 13454544 555 555565 45799999999999999999999999976544332212212221344 33
Q ss_pred EecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHHH-----HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013521 281 ISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNRI-----VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYY 354 (441)
Q Consensus 281 i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 354 (441)
+++|.++ .|+ -++.++.++++ .+.+... ....+...++++..++.+.++.-.. +...++.
T Consensus 274 --~~gK~l~-gG~~p~~a~~~~~~~--------~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~---~~~~~~~ 339 (427)
T TIGR00508 274 --CVGKALT-GGYMTLSATVTTDKV--------AQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLE---GEWQKQV 339 (427)
T ss_pred --Eechhhh-cCcccceEEEEcHHH--------HHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh---CCHHHHH
Confidence 3899996 785 67877777666 2333321 1122233577887777777762111 2335666
Q ss_pred HHHHHHHHHHHHhCCCe-eeCC--CCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHH
Q 013521 355 KENAKIIVDAFQSLGLK-VNGG--KNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHRE 428 (441)
Q Consensus 355 ~~~~~~l~~~L~~~g~~-~~~~--~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~ 428 (441)
+++.+++.+.|++++.. .... ..|.++-+.+.. .....+..++++ +||.+.+.. +.+|++- ..+++
T Consensus 340 ~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~-~Gv~~~~~~-------~~l~~~ppl~~t~~ 411 (427)
T TIGR00508 340 SAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPVNVEELQKKFVE-QGVWIRPFG-------KLIYVMPPYIITTE 411 (427)
T ss_pred HHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCccCHHHHHHHHHH-CCeEEEecC-------CEEEEECCCCCCHH
Confidence 66777777777665211 1111 136666666642 234456666655 599997631 3689874 46899
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
++++++++|.+++
T Consensus 412 ~id~~~~~l~~~l 424 (427)
T TIGR00508 412 QLQKLTAALIEAL 424 (427)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-12 Score=121.41 Aligned_cols=214 Identities=18% Similarity=0.180 Sum_probs=143.2
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccce
Q 013521 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN 193 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~ 193 (441)
-...+.+.+++.. .....++++.++.|+.. +..++.+|+.|++....|.+...+++....+.. ++
T Consensus 78 t~~~le~~iaal~------ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~g--------ie 143 (409)
T KOG0053|consen 78 TRDVLESGIAALE------GAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFG--------GE 143 (409)
T ss_pred chHHHHHHHHHHh------CCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhC--------ce
Confidence 3455666666653 23457777777777765 788899999999999999998777776654321 46
Q ss_pred eEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC
Q 013521 194 IVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG 273 (441)
Q Consensus 194 v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~ 273 (441)
...++.++-.++.... .+++++|++-+|.||+..+.+ +++|.++|+++|++||+|+.++....-. |.+ +
T Consensus 144 ~~~vd~~~~~~~~~~i--~~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~~-pL~---l-- 212 (409)
T KOG0053|consen 144 GDFVDVDDLKKILKAI--KENTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQD-PLP---L-- 212 (409)
T ss_pred eeeechhhHHHHHHhh--ccCceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCcccccC-hhh---c--
Confidence 6666554332221111 257999999999999999988 8899999999999999999998642221 222 2
Q ss_pred CcceeEEEecCCcccCCcc-ceeEEEEee-ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHH
Q 013521 274 AREVAIEISSFSKFAGFTG-VRLGWTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVI 351 (441)
Q Consensus 274 ~~~~~i~i~S~SK~~~~~G-~r~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 351 (441)
+-.|++.|.+|.+|-.+ +=.|.++.+ .++ ..++...+.......+++.. ++..++.+.+.-+.
T Consensus 213 --GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~--------~~~l~~~~~~lg~~~~p~~~-----~ll~Rglktl~lRi 277 (409)
T KOG0053|consen 213 --GADIVVHSATKYIGGHSDVIGGSVVLNSEEL--------ASRLKFLQEDLGWCEDPFDL-----FLLSRGLKTLHLRI 277 (409)
T ss_pred --CCCEEEEeeeeeecCCcceeeeEEecCcHHH--------HHHHHHHHHHhcCCCCHHHH-----HHHhcCcchhhhhH
Confidence 12399999999997322 224676665 333 45666666666666666653 22224554455556
Q ss_pred HHHHHHHHHHHHHHHhC
Q 013521 352 DYYKENAKIIVDAFQSL 368 (441)
Q Consensus 352 ~~~~~~~~~l~~~L~~~ 368 (441)
++..++...+.+.|++.
T Consensus 278 ~~~~ena~~~A~~Le~~ 294 (409)
T KOG0053|consen 278 NKHSENALKIALLLEAH 294 (409)
T ss_pred HHHHHHHHHHHHHhhhC
Confidence 66667766777777765
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-12 Score=132.14 Aligned_cols=170 Identities=13% Similarity=0.150 Sum_probs=114.5
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGK 190 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~ 190 (441)
.+.|...--+.+|+.+ +|.+ .-.++|||+|.++.+ +++++++||.|+++..+|-++...+.+.|.
T Consensus 202 ~p~G~I~eAq~~aA~~---fgA~-~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga---------- 267 (755)
T PRK15029 202 DHTGAFGESEKYAARV---FGAD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGA---------- 267 (755)
T ss_pred CCCcHHHHHHHHHHHH---hCCC-cEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCC----------
Confidence 4445544444444443 3643 688899999999887 788999999999999999999999999994
Q ss_pred cceeEEeecCC-CCCccCC--------------CCCCC--------CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC
Q 013521 191 YRNIVYMNCRP-ENNFFPD--------------LSTTS--------RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANG 247 (441)
Q Consensus 191 ~~~v~~v~~~~-~~~~~~~--------------~~~~~--------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~ 247 (441)
.+++++... +.++... +...+ +++++++++|++ -|.+++ +++|++.|++++
T Consensus 268 --~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~ 341 (755)
T PRK15029 268 --KPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTS 341 (755)
T ss_pred --eEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcC
Confidence 566654332 1111111 11122 344899999977 799998 889999999999
Q ss_pred cEEEEcccccc-cccCCC-CC-ccccc---CCCcceeEEEecCCcccCCcccee-EEEEeecc
Q 013521 248 SIIVYDSAYAA-YITDPS-PR-SIYEI---PGAREVAIEISSFSKFAGFTGVRL-GWTVVPEE 303 (441)
Q Consensus 248 ~~ii~De~~~~-~~~~~~-~~-~~~~~---~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~ 303 (441)
+++++||+|+. |.|.+. |. +.... ......++++.|.+|++ |++.- +++.....
T Consensus 342 ~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~LHv~~~ 402 (755)
T PRK15029 342 DRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREG 402 (755)
T ss_pred CeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcc--cchhhhhhheeCCC
Confidence 99999999986 334432 21 22210 10111248999999998 45554 46666443
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.9e-12 Score=124.38 Aligned_cols=340 Identities=13% Similarity=0.074 Sum_probs=192.8
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|- ..+ ..+|.+.+++.+.+.+... .....|. .+.+..+|+.+....+...+.+++++++++
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~-~~~~~~~-----~~~~~~lae~L~~~~p~~~~~v~f~~sGsE 118 (466)
T PRK07030 45 EGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEH-VILAGFS-----HEPVIELSERLVKITPPGLSRCFYADNGSS 118 (466)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCC-ccccccC-----CHHHHHHHHHHHHhCCCCcCEEEEeCCcHH
Confidence 356788887663 222 3578899999998876421 0111221 233444555554322333469999999999
Q ss_pred HHHH-HHHh--c----C-C-CCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCCCc--c--------
Q 013521 147 DISR-LQML--L----G-S-NVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPENNF--F-------- 206 (441)
Q Consensus 147 al~~-l~~l--~----~-~-gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~~~--~-------- 206 (441)
|... +... . . + ..+|+...-+|++....+...+....+.. .......+..+|....... .
T Consensus 119 Ave~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~ 198 (466)
T PRK07030 119 AIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSR 198 (466)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHH
Confidence 9886 4211 1 1 2 35788899999997544433322110000 0000012223332110000 0
Q ss_pred ---CCCC----C-CCCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCc
Q 013521 207 ---PDLS----T-TSRTDIIFFCSP--NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR 275 (441)
Q Consensus 207 ---~~~~----~-~~~~~~v~i~~p--~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~ 275 (441)
.+++ . .+++.+|+ ..| +.-.|. ..|++.+++|.++|++||+++|.||+...|...+.......+.-.|
T Consensus 199 ~~l~~le~~~~~~~~~iAAvi-~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~P 277 (466)
T PRK07030 199 RMFAHMEQTLAEHHDEIAAVI-VEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRP 277 (466)
T ss_pred HHHHHHHHHHHhCCCceEEEE-EecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCC
Confidence 0011 1 24555555 455 555566 4678999999999999999999999998765443322222222235
Q ss_pred ceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH-------HHhhhcCCCcHHHHHHHHHhcCCCcHHHH
Q 013521 276 EVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR-------IVCTCFNGASNIVQAGGLACLSPDGFQAL 347 (441)
Q Consensus 276 ~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 347 (441)
| +-+++|.++ .| +.+|.+++++++. +.+.. .....+++.++++..++.+.|+.-..
T Consensus 278 D----iv~~gKgl~-gG~~Pi~av~~~~ei~--------~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~--- 341 (466)
T PRK07030 278 D----FLCLSKALT-GGYLPLAAVLTTDTVY--------QAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQ--- 341 (466)
T ss_pred C----EEeeehhcc-CCcccceEEEecHHHH--------HHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh---
Confidence 5 334799998 89 5999999988873 33321 11223444688888888888762111
Q ss_pred HHHHHHHHHHHHHHHHHHHhC---C-CeeeCCCCceEEEEEcCC-CC-------h----HHHHHHHHHhcCeEEeCCCCc
Q 013521 348 RTVIDYYKENAKIIVDAFQSL---G-LKVNGGKNAPYVWVQFPG-SS-------S----WDVFAEILEKTHILTIPGSGF 411 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~---g-~~~~~~~~~~~~~~~~~~-~~-------~----~~~~~~ll~~~gi~v~pg~~f 411 (441)
+++.++.++.-+++.+.|+++ . +.-.. .-|.++-+++.. .. . ..+...+++ +|+.+.+.
T Consensus 342 ~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vr-G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~--- 416 (466)
T PRK07030 342 DNVIENNRALARRMAEATAHLADHPHVAEVR-QTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALE-RGALLRPL--- 416 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCEEEeE-eceeEEEEEeccCccccccCcchhHHHHHHHHHHHH-CCeEEEec---
Confidence 234455555556666665543 2 21122 246666666631 10 1 234455554 59999762
Q ss_pred CCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 412 GPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 412 ~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+.+|+. +..+++++++++++|.+++
T Consensus 417 ----g~~i~~~Ppl~it~~eid~~~~~l~~al 444 (466)
T PRK07030 417 ----GSVVYFLPPYVITPEQIDFLAEVASEGI 444 (466)
T ss_pred ----CCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 1468886 4668999999999998864
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-14 Score=136.66 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=113.2
Q ss_pred CCcCc-HHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccC
Q 013521 112 AEQGN-MALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189 (441)
Q Consensus 112 ~~~g~-~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~ 189 (441)
.+.|. .+..+..|+.+ |. .+..++|+|+|.++.+ ++++++|||.|+++..+|-++...+.+.|
T Consensus 63 ~p~G~I~eAe~~aA~~f----GA-d~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~g---------- 127 (417)
T PF01276_consen 63 DPEGIIKEAEELAARAF----GA-DKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSG---------- 127 (417)
T ss_dssp TTBTHHHHHHHHHHHHH----TE-SEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHT----------
T ss_pred CCccHHHHHHHHHHHhc----CC-CeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcC----------
Confidence 34444 44444555544 53 3578899999999987 78999999999999999999999999999
Q ss_pred ccceeEEeecCCC-CCc----cC-----C-----CCCCCCcc---EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEE
Q 013521 190 KYRNIVYMNCRPE-NNF----FP-----D-----LSTTSRTD---IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIV 251 (441)
Q Consensus 190 ~~~~v~~v~~~~~-~~~----~~-----~-----~~~~~~~~---~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii 251 (441)
+.+++++...+ .++ .+ + +.+.+..+ +++|++|++ -|.+++ +++|+++|++++++|+
T Consensus 128 --a~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~ll 201 (417)
T PF01276_consen 128 --AIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLL 201 (417)
T ss_dssp --EEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEE
T ss_pred --CeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEE
Confidence 56777666421 111 11 0 11124444 499999977 799999 8999999999999999
Q ss_pred Ecccccc-cccCCCCCcccccCC---CcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 252 YDSAYAA-YITDPSPRSIYEIPG---AREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 252 ~De~~~~-~~~~~~~~~~~~~~~---~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
+||+|+. +.|.+-|.+...+.. ....++++.|.+|+++ +=...+++..+.+.
T Consensus 202 vDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~-altQts~lh~~~~~ 257 (417)
T PF01276_consen 202 VDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLP-ALTQTSMLHVKGDR 257 (417)
T ss_dssp EE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSS-S-TT-EEEEEETCC
T ss_pred EEccccccccCCCCccchhhccCccccccceeeeechhhccc-ccccceEEEecCCC
Confidence 9999986 334432333333311 1346799999999984 33345677777764
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-11 Score=123.47 Aligned_cols=340 Identities=11% Similarity=0.078 Sum_probs=189.9
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-----CCCcEEEc
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-----EGDEIFIS 141 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-----~~~~I~~t 141 (441)
.++.++|+..|. ..+ ..+|.+.+++.+.+.++.. .....+. .+.+..+|+.+....+. +.+.++++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~-~~~~~~~-----~~~~~~lae~L~~~~p~~~~~~~~~~v~f~ 135 (472)
T PRK08742 62 DGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQ-VMLAGFT-----HEPAVQLAEQLLAIAPRQDGRAPLSKVFYA 135 (472)
T ss_pred CCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCC-ccccccC-----CHHHHHHHHHHHHhCCCcccCCCCCEEEEe
Confidence 456789987663 222 3678899999998875431 1111222 23345555555432221 23689999
Q ss_pred CCcHHHHHH-HH--Hhc----C-C-CCEEEEeCCCchhhHhHHHHhccccccccc-cCccceeEEeecCCCCCc--c---
Q 013521 142 DGAQSDISR-LQ--MLL----G-S-NVTVAVQDPSFPAYIDTSVIVGQAGKFLKE-TGKYRNIVYMNCRPENNF--F--- 206 (441)
Q Consensus 142 ~G~~~al~~-l~--~l~----~-~-gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~v~~v~~~~~~~~--~--- 206 (441)
+++++|... +. ... + + ..+|+....+|++....+............ ......+..+|....... .
T Consensus 136 ~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~ 215 (472)
T PRK08742 136 DNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSA 215 (472)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCH
Confidence 999999885 42 112 1 2 368999999999975444433211100000 000011223332110000 0
Q ss_pred --------CCCC----C-CCCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc
Q 013521 207 --------PDLS----T-TSRTDIIFFCSP--NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE 270 (441)
Q Consensus 207 --------~~~~----~-~~~~~~v~i~~p--~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~ 270 (441)
..++ . ..++.+|+ ..| +.-.|. ..|++.++++.++|++||+++|.||+...|...+.......
T Consensus 216 ~~~~~~~~~~l~~~~~~~~~~iAAvI-~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~ 294 (472)
T PRK08742 216 EDYALQAADALQALFEQSPGEICALI-LEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQ 294 (472)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEE-EccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHh
Confidence 0001 1 13555555 466 566676 56899999999999999999999999987755443222222
Q ss_pred cCCCcceeEEEecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHH------HHhhhcCCCcHHHHHHHHHhcCCCc
Q 013521 271 IPGAREVAIEISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNR------IVCTCFNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 271 ~~~~~~~~i~i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~ 343 (441)
+.-.|| |-+++|.++ .|+ .+|.+++++++. +.+.. .....+++.++++..++.+.|+--.
T Consensus 295 ~gv~PD----iv~~gKgl~-gG~~Plaav~~~~ei~--------~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~ 361 (472)
T PRK08742 295 AGVMPD----LLCLSKGLT-GGFLPLSAVLATQQLY--------DAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFA 361 (472)
T ss_pred cCCCCC----EEEEccccc-CCCCCcceeeccHHHH--------HHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHH
Confidence 222355 334799998 884 899999988773 33321 1122334467888888888776211
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhCCC-eeeCCCCceEEEEEcCC-CC-------h----HHHHHHHHHhcCeEEeC
Q 013521 344 FQALRTVIDYYKENAKIIVD---AFQSLGL-KVNGGKNAPYVWVQFPG-SS-------S----WDVFAEILEKTHILTIP 407 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~---~L~~~g~-~~~~~~~~~~~~~~~~~-~~-------~----~~~~~~ll~~~gi~v~p 407 (441)
. +++.+..++.-+++.+ .+.++.+ .-.. .-|.++-+++.. .. + ..+...++ ++||.+.+
T Consensus 362 ~---~~l~~~~~~~g~~l~~~~~~~~~~~~i~dvR-G~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~ 436 (472)
T PRK08742 362 D---DDVIARNQPTAARMTQLAAQIGEHPHVADVR-QAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAAL-ARGVVLRP 436 (472)
T ss_pred H---CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEe-ccceEEEEEeccCccccccCCchhHHHHHHHHHHH-HCCeEEEe
Confidence 1 1222222333333333 3333432 1122 256666666631 10 1 23445555 45999976
Q ss_pred CCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 408 GSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 408 g~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
. + +.|||. +..+++++++++++|.++|
T Consensus 437 ~------g-~vi~~~PpL~it~~ei~~~~~~l~~~l 465 (472)
T PRK08742 437 L------G-DVLYWMPPYCVDEAQLALLADTTRHAI 465 (472)
T ss_pred c------C-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2 1 579998 5568999999999998864
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-12 Score=121.55 Aligned_cols=309 Identities=12% Similarity=0.092 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC--cEEEcCCcHHHHHH-HHHhc-CCCCEEEE
Q 013521 88 DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD--EIFISDGAQSDISR-LQMLL-GSNVTVAV 163 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~--~I~~t~G~~~al~~-l~~l~-~~gd~Vlv 163 (441)
...++++.+.+.. ..++ ++...++-+.+.+.|.+.++.+.+ -++++.+++.+++. +.+++ ++|+.|++
T Consensus 17 ~~~~~~~~~~~~~------~~HR--s~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv 88 (374)
T TIGR01365 17 GWSIEELKNAPLG------RSHR--SKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLA 88 (374)
T ss_pred hhhHHHHhhhhcc------cCcC--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEE
Confidence 3356666664432 2234 234455655566666655666433 35678889999997 78888 58988887
Q ss_pred eCCCchhh--H-hHHHHhccccccccccCccc-eeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHH
Q 013521 164 QDPSFPAY--I-DTSVIVGQAGKFLKETGKYR-NIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKL 239 (441)
Q Consensus 164 ~~p~y~~~--~-~~~~~~g~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i 239 (441)
.. +++- . ++++..| + ++..+.......+.+ ++....+.|++++....||+..|. +++
T Consensus 89 ~g--~FG~r~~~eia~~~g------------~~~v~~l~~~~g~~~~~--~~ve~~~~v~~vhnETSTGv~npv---~~i 149 (374)
T TIGR01365 89 WE--SFGKGWVTDVTKQLK------------LPDVRVLEAEYGKLPDL--KKVDFKNDVVFTWNGTTSGVRVPN---GDF 149 (374)
T ss_pred EC--HHHHHHHHHHHHhcC------------CCCcEEEcCCCCCCCCH--HHcCCCCCEEEecCCCchheeccc---ccc
Confidence 54 4443 3 5666677 3 355555544333322 221111336677888899999994 454
Q ss_pred HHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCc-----hhHH
Q 013521 240 VEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY-----PVIK 314 (441)
Q Consensus 240 ~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~-----~~~~ 314 (441)
+..+ ++.++|+|.+-+- . +.+..+- +..+++.|..|.+++|+ .+++++++++.+..... ....
T Consensus 150 ~~~~--~~~lliVDavSs~-g--~~~l~~d------~iDv~~tgsQK~L~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~ 217 (374)
T TIGR01365 150 IPAD--REGLTICDATSAA-F--AQDLDYH------KLDVVTFSWQKVLGGEG-AHGMLILSPRAVARLESYTPAWPLPK 217 (374)
T ss_pred cccc--CCCcEEEEccchh-c--CCCCChh------HCcEEEEechhccCCCC-ceEEEEECHHHHHHHhhcCCCCCChh
Confidence 4221 5899999998773 2 2233222 24488999999998644 58889988888633110 0001
Q ss_pred HHH---------HHH-hhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhCC-CeeeCC----CCc
Q 013521 315 DFN---------RIV-CTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSLG-LKVNGG----KNA 378 (441)
Q Consensus 315 ~~~---------~~~-~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~----~~~ 378 (441)
.+. ... ..+.++++.....++..+++.-..+ .++.+.++++++++.+++.++++| +.+... .+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~ 297 (374)
T TIGR01365 218 IFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSN 297 (374)
T ss_pred hhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCC
Confidence 000 011 2233444555555555555310011 358899999999999999999998 666542 122
Q ss_pred eEEEEEcCC--C-----C-----hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-e-cCHHHHHHHHHHHH
Q 013521 379 PYVWVQFPG--S-----S-----SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-F-GHREYISEACRRLK 438 (441)
Q Consensus 379 ~~~~~~~~~--~-----~-----~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~-~~~~~~~~~l~~l~ 438 (441)
..+.+.++. . + ..++ ...++++||.+.+|.. ...+..+||+. + .+.++++.++..|.
T Consensus 298 tvt~v~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gi~i~~G~~--~~~~~~fRIg~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 298 TSVCLKVVDPAIDALDEDAQADFAKEL-ISTLEKEGVAYDIGSY--RDAPSGLRIWCGATVEKSDLECLCPWLD 368 (374)
T ss_pred CeEEEEeCCccccccccchhhHHHHHH-HHHHHHCCEEEecccc--ccCCCceEEecCCcCCHHHHHHHHHHHH
Confidence 235556642 2 1 3444 4445566999998763 33357899995 3 38899999998874
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-11 Score=122.56 Aligned_cols=341 Identities=13% Similarity=0.096 Sum_probs=190.3
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC-CCCCcEEEcCCcHH
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG-IEGDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~-~~~~~I~~t~G~~~ 146 (441)
++..+|+..|- ..+ ..+|.+.+++.+.+.+.........+ ..+.+..+|+.+.+..+ -..+.+++++++++
T Consensus 41 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsE 115 (449)
T PRK07481 41 GKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGT-----THPRAIELSYELIDMFAPEGMRRVFFSSGGSD 115 (449)
T ss_pred CCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceeccccc-----CCHHHHHHHHHHHHhcCCCCCCEEEEcCchHH
Confidence 45678876552 222 35788999999988753210001112 12344555555544232 12468999999999
Q ss_pred HHHH-HH--H-hc---C-CC-CEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCC--Ccc-CCC----
Q 013521 147 DISR-LQ--M-LL---G-SN-VTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPEN--NFF-PDL---- 209 (441)
Q Consensus 147 al~~-l~--~-l~---~-~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~--~~~-~~~---- 209 (441)
|+.. +. . .. + +| .+|+...-+|++....+........+.. .......+..++..... .+. .+.
T Consensus 116 Ave~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~ 195 (449)
T PRK07481 116 SVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELA 195 (449)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHH
Confidence 9886 42 1 11 1 23 5789999999996543333221110000 00000112222221100 000 010
Q ss_pred -------C-----C-CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCC
Q 013521 210 -------S-----T-TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGA 274 (441)
Q Consensus 210 -------~-----~-~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~ 274 (441)
+ . .+++.+|++ .| +.-.|.. .+.+.++++.++|++||+++|.||+...|...+.......+.-.
T Consensus 196 ~~~~~~le~~i~~~~~~~iAAvii-EPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~ 274 (449)
T PRK07481 196 RICARLLEREIAFQGPDTIAAFIA-EPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVK 274 (449)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE-ecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCC
Confidence 0 1 134556554 66 5555764 57888999999999999999999999876443321111122223
Q ss_pred cceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH-------HHhhhcCCCcHHHHHHHHHhcCCCcHHH
Q 013521 275 REVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR-------IVCTCFNGASNIVQAGGLACLSPDGFQA 346 (441)
Q Consensus 275 ~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 346 (441)
|| |-+++|.++ .| +.+|.+++++++. +.+.. .....+++.++++..++.+.|+.-..
T Consensus 275 PD----iv~~gKgl~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~-- 339 (449)
T PRK07481 275 PD----IMCLAKGIT-SGYVPLGATMVNARIA--------DAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVR-- 339 (449)
T ss_pred CC----EEEEeeccc-CCCcCceEEEEcHHHH--------HHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHh--
Confidence 55 334799998 78 5899999988763 33321 11223444678888888887762111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCCC-------C-----hHHHHHHHHHhcCeEEeCCCC
Q 013521 347 LRTVIDYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGS-------S-----SWDVFAEILEKTHILTIPGSG 410 (441)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~ll~~~gi~v~pg~~ 410 (441)
++..++.++.-+.+.+.|+++ ++....-.-|.++.+++... + ...+...++ ++||.+.+..
T Consensus 340 -~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g- 416 (449)
T PRK07481 340 -EDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVAR-ENGVLVRPSG- 416 (449)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHH-hCCeEEEecC-
Confidence 334455555666666666553 32211112466666666311 1 123444444 4699997731
Q ss_pred cCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 411 FGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 411 f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+.+||+ +..+++++++++++|.+++
T Consensus 417 ------~~i~l~Ppl~it~~eid~~~~~l~~~l 443 (449)
T PRK07481 417 ------TKIILSPPLVIQREDVDRIVDALDAGL 443 (449)
T ss_pred ------CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 248888 5568999999999998764
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-12 Score=125.45 Aligned_cols=337 Identities=11% Similarity=0.079 Sum_probs=190.3
Q ss_pred CCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..|.. .+ ..+|.+.+++.+.+.+... .....+ .. +.+..+|+.+.+..+-..+.+++++++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~-~~~~~~-~~----~~~~~lae~L~~~~p~~~~~v~f~~SGse 111 (422)
T PRK05630 38 DGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSH-VMFGGL-TH----EPAIKLTRKLLNLTDNGLDHVFYSDSGSV 111 (422)
T ss_pred CCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCC-cccCCc-CC----HHHHHHHHHHHhhCCCCcCEEEEeCCcHH
Confidence 3567888866632 22 3678999999999876431 011111 12 23344444443322323468999999999
Q ss_pred HHHH-HH--HhcC-----C-CCEEEEeCCCchhhHhHHHHh-cccc----ccccccCccceeEEeecCCCCCcc-CC---
Q 013521 147 DISR-LQ--MLLG-----S-NVTVAVQDPSFPAYIDTSVIV-GQAG----KFLKETGKYRNIVYMNCRPENNFF-PD--- 208 (441)
Q Consensus 147 al~~-l~--~l~~-----~-gd~Vlv~~p~y~~~~~~~~~~-g~~~----~~~~~~~~~~~v~~v~~~~~~~~~-~~--- 208 (441)
|+.. +. .... + ..+|+....+|++....+... +... .+.+.. ..+..+|........ .+
T Consensus 112 A~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~ 188 (422)
T PRK05630 112 SVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTL---PEQIFAPAPPVRGSSPQEISE 188 (422)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccC---CCCeEcCCCcccCCChHHHHH
Confidence 9885 42 1121 2 357999999999854333222 2100 000000 112223222110000 00
Q ss_pred ----CCC--CCCccEEEEcCC--CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeE
Q 013521 209 ----LST--TSRTDIIFFCSP--NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAI 279 (441)
Q Consensus 209 ----~~~--~~~~~~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i 279 (441)
++. ..++.+|++ .| +.-.|.. .+.+.+++|.++|++||+++|.||++..+...+.........-.|| |
T Consensus 189 ~~~~~~~~~~~~iAAvi~-EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PD--i 265 (422)
T PRK05630 189 YLRSLELLIDETVAAIII-EPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPD--I 265 (422)
T ss_pred HHHHHHHHHhhceEEEEE-echhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCC--e
Confidence 111 135666554 55 6666765 5778999999999999999999999976643332211112222344 3
Q ss_pred EEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH------HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHH
Q 013521 280 EISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR------IVCTCFNGASNIVQAGGLACLSPDGFQALRTVID 352 (441)
Q Consensus 280 ~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 352 (441)
+ +++|.++ .| ..+|.+++++++. +.+.. +....+++.+++...++.+.++.-.. +...+
T Consensus 266 ~--t~gK~l~-gG~~p~~av~~~~~i~--------~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~---~~~~~ 331 (422)
T PRK05630 266 M--CVGKALT-GGFMSFAATLCTDKVA--------QLISTPNGGGALMHGPTFMANPLACAVAHASLEIIET---GMWRK 331 (422)
T ss_pred e--eeechhh-cCccccceeeccHHHH--------HHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHh---CcHHH
Confidence 3 7899996 67 4899999988773 33321 11123345677777777777752111 12334
Q ss_pred HHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eec
Q 013521 353 YYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFG 425 (441)
Q Consensus 353 ~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~ 425 (441)
+.+++.+++.+.|+++ .+.-.. .-|.++-+++... ....+...+++ +|+.+.+. + +.+||. +..
T Consensus 332 ~~~~~g~~l~~~L~~l~~~~~v~~vR-g~Gl~~~ie~~~~~~~~~~~~~~~~-~Gl~~~~~------g-~~l~~~PpL~i 402 (422)
T PRK05630 332 QVKRIEAELIAGLSPLAHLPGVADVR-VLGAIGVVEMEQPVDMEEATQAAVD-HGVWLRPF------G-RLVYVMPPYIT 402 (422)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeeee-ccccEEEEEECCcccHHHHHHHHHH-CCeEEEec------C-CEEEEECCccC
Confidence 5555555555555533 121111 2477777777532 23455555554 59999762 2 578988 466
Q ss_pred CHHHHHHHHHHHHhhC
Q 013521 426 HREYISEACRRLKNFL 441 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~l 441 (441)
+++++++++++|.+++
T Consensus 403 t~~~i~~~~~~l~~al 418 (422)
T PRK05630 403 TSEQIAQICAALAAAV 418 (422)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999998864
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-12 Score=124.82 Aligned_cols=341 Identities=9% Similarity=0.028 Sum_probs=187.7
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..|. ..+ ..+|.+.+++.+.+.+.........+ ..+.+..+|+.+....+...+.+++++++++
T Consensus 48 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~-----~~~~~~~lae~L~~~~p~~~~~v~f~~SGse 122 (456)
T PRK07480 48 EGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKT-----THPPAIELAAKLAEVAPPGFNHVFFTNSGSE 122 (456)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccc-----CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHH
Confidence 456788887663 222 35789999999988764211111122 2344445555554323333469999999999
Q ss_pred HHHH-HH--Hhc----C-C-CCEEEEeCCCchhhHhHHHHhccccccc-cccCccceeEEeecCCC---------CCcc-
Q 013521 147 DISR-LQ--MLL----G-S-NVTVAVQDPSFPAYIDTSVIVGQAGKFL-KETGKYRNIVYMNCRPE---------NNFF- 206 (441)
Q Consensus 147 al~~-l~--~l~----~-~-gd~Vlv~~p~y~~~~~~~~~~g~~~~~~-~~~~~~~~v~~v~~~~~---------~~~~- 206 (441)
|... +. ... + + ..+|+...-+|++........+...... ........+..++.... ..+.
T Consensus 123 A~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 202 (456)
T PRK07480 123 ANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGL 202 (456)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHH
Confidence 9886 42 222 1 2 3468888889988643222222110000 00000011222221100 0000
Q ss_pred ---CCCC-----C-CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCc
Q 013521 207 ---PDLS-----T-TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR 275 (441)
Q Consensus 207 ---~~~~-----~-~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~ 275 (441)
..++ . ..++.+|++ .| +.-.|.. .|.+.+++|.++|++||+++|.||++..|...+.......+.-.|
T Consensus 203 ~~~~~l~~~~~~~~~~~vAAvi~-EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~P 281 (456)
T PRK07480 203 AAARQLEAKILELGADNVAAFIG-EPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKP 281 (456)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEE-ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCC
Confidence 0111 1 135556554 55 5556764 577889999999999999999999998764443222222232234
Q ss_pred ceeEEEecCCcccCCccc-eeEEEEeeccccccCCchhHHHHH----HHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHH
Q 013521 276 EVAIEISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFN----RIVCTCFNGASNIVQAGGLACLSPDGFQALRTV 350 (441)
Q Consensus 276 ~~~i~i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 350 (441)
| +-+|+|.++ .|+ .+|.+++++++. +.+. ......+++.++++..++.+.|+.-.. +.+
T Consensus 282 D----iv~~gK~l~-gG~~Pi~av~~~~~i~--------~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~---~~l 345 (456)
T PRK07480 282 D----LMTIAKGLT-SGYIPMGAVGVGDRVA--------EVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRD---EGI 345 (456)
T ss_pred C----eeeeehhhc-cCCccceEEEEcHHHH--------HHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHh---CCH
Confidence 5 346899998 784 899999987763 3331 112233455788888888888862111 223
Q ss_pred HHHH-HHHHHHHHHHHHh---CCCe-eeCCCCceEEEEEcCCC-------Ch-----HHHHHHHHHhcCeEEeCCCCcCC
Q 013521 351 IDYY-KENAKIIVDAFQS---LGLK-VNGGKNAPYVWVQFPGS-------SS-----WDVFAEILEKTHILTIPGSGFGP 413 (441)
Q Consensus 351 ~~~~-~~~~~~l~~~L~~---~g~~-~~~~~~~~~~~~~~~~~-------~~-----~~~~~~ll~~~gi~v~pg~~f~~ 413 (441)
.++. ++.-+++.+.|++ +++. -.. .-|.++-+++... .. ..+...++ ++||.+.+.
T Consensus 346 ~~~~~~~~g~~l~~~l~~l~~~~~i~~vr-G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~----- 418 (456)
T PRK07480 346 VERVRDDTGPYLQKRLRELADHPLVGEVR-GVGLVGAIELVKDKATRERFEAGGGVGTICRDHCF-ANGLIMRAV----- 418 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeeEE-eecceEEEEEeccccccccCcchhhHHHHHHHHHH-HCCcEEeec-----
Confidence 3334 2344444444443 3321 112 2455666666210 01 12334444 569999652
Q ss_pred CCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 414 GGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 414 ~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
.+.+||+- ..+++++++++++|.+++
T Consensus 419 --~~~l~~~Ppl~it~~eid~~~~~l~~al 446 (456)
T PRK07480 419 --GDRMIISPPLVITHAEIDELVEKARKAL 446 (456)
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 14688884 448999999999998764
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=127.33 Aligned_cols=321 Identities=18% Similarity=0.199 Sum_probs=201.0
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEE
Q 013521 84 QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAV 163 (441)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv 163 (441)
.++.+.+.+++...-.... .....-+...-..++.+.+|+|+ + .++.+++.-|-...-..+..+++||..|+.
T Consensus 154 g~ca~~~~~~~~kygl~~c--ss~~e~G~~~~hkelE~l~A~f~----g-~e~a~vF~mGf~TNs~~~p~l~~~gsLIiS 226 (519)
T KOG1357|consen 154 GPCAEASLKSFDKYGLSRC--SSRHEAGTTEEHKELEELVARFL----G-VEDAIVFSMGFATNSMNIPSLLGKGSLIIS 226 (519)
T ss_pred CcCChHHHHHHHHhccccc--ccchhcccHHHHHHHHHHHHHhc----C-CcceEEEeccccccccCcceeecCCcceee
Confidence 4566666666665322111 11111112223455666666664 5 457888888843222236788899999999
Q ss_pred eCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC--------CCC--CccEEEEc-CCCCccccCCC
Q 013521 164 QDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS--------TTS--RTDIIFFC-SPNNPTGHAAT 232 (441)
Q Consensus 164 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~--------~~~--~~~~v~i~-~p~NPtG~~~~ 232 (441)
.+..|.++...++..| +.+.....++..++.--+. ++. --|.+++. .-...-|.+..
T Consensus 227 DelNHaSi~~GaRLSg------------AtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~ 294 (519)
T KOG1357|consen 227 DELNHASLITGARLSG------------ATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD 294 (519)
T ss_pred ccccchheeccccccC------------ceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc
Confidence 9999999998888888 4666666654322111010 011 12333332 32344565555
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC--CcceeEEEecCCcccCCccceeEEEEeeccccccCCc
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG--AREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY 310 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~--~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~ 310 (441)
+.+++++++++..+++.||+|+--..+........+.+ ..+.+|..++|+|.||.+| ||+.++++++
T Consensus 295 ---Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G---Gyiagsk~li----- 363 (519)
T KOG1357|consen 295 ---LPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGSKELI----- 363 (519)
T ss_pred ---cHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc---ceecCcHHHH-----
Confidence 88999999999999999999996554443445555432 2356799999999999888 9999998884
Q ss_pred hhHHHHHHHH---hhhcCCCcHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEE
Q 013521 311 PVIKDFNRIV---CTCFNGASNIVQAGGLACLS----PDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWV 383 (441)
Q Consensus 311 ~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~----~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 383 (441)
+.+.... ......++++.|.. ...++ +.+...-++..++++++..+++..|...|+-+++..+.+.+.+
T Consensus 364 ---d~lrt~s~~~~yat~~sppvaqq~-~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvpl 439 (519)
T KOG1357|consen 364 ---DYLRTPSPSALYATSLSPPVAQQI-LTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPL 439 (519)
T ss_pred ---hhhccCCCceeecccCChHHHHHH-HHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCccee
Confidence 3222111 11122244555553 33333 2334566788899999999999999999999988777765433
Q ss_pred Ec-CCCChHHHHHHHHHhcCeEEeCCCCc-CCCCCCeEEEEee--cCHHHHHHHHHHHHh
Q 013521 384 QF-PGSSSWDVFAEILEKTHILTIPGSGF-GPGGNEHIRVSAF--GHREYISEACRRLKN 439 (441)
Q Consensus 384 ~~-~~~~~~~~~~~ll~~~gi~v~pg~~f-~~~~~~~iRls~~--~~~~~~~~~l~~l~~ 439 (441)
-+ ....-..+-++++++ +|.+.-+..- .+.-+..+|++.+ ++.|+++.+++.+.+
T Consensus 440 ll~~~~k~~~f~r~~l~~-nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~ 498 (519)
T KOG1357|consen 440 LLYGPAKIVAFSREMLER-NIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDR 498 (519)
T ss_pred eecCcccccHHHHHHHhc-CceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhh
Confidence 33 222344666677766 6766544322 2334677888863 378999999988765
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-11 Score=121.80 Aligned_cols=330 Identities=13% Similarity=0.062 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC-------CcEEEcCCcHHHHHH-HHH----hc
Q 013521 88 DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG-------DEIFISDGAQSDISR-LQM----LL 155 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-------~~I~~t~G~~~al~~-l~~----l~ 155 (441)
..+-+.+..++. .....|...+...++.+.+-+|+.+.++.+. ..=++|+|++++... +.. .+
T Consensus 145 ~~lgd~l~sa~n-----~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~ 219 (539)
T PLN02590 145 GFLGEMLNAGLS-----VVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRIL 219 (539)
T ss_pred HHHHHHHHHhcc-----cccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHH
Confidence 444455555443 2334565667889999999999998777654 235678888877543 321 11
Q ss_pred C-------CCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----------CCCccE
Q 013521 156 G-------SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----------TSRTDI 217 (441)
Q Consensus 156 ~-------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----------~~~~~~ 217 (441)
+ +.-.|++.+.+|.++..++..+|... ..++.||++..+++..+.+. ...+-+
T Consensus 220 ~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~---------~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~ 290 (539)
T PLN02590 220 KKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHE---------ENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFF 290 (539)
T ss_pred hhhcccCCCCEEEEecCCchHHHHHHHHHcCCCc---------ccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEE
Confidence 1 22256667889999999999998411 25788888754344444321 122344
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
|+-+-....||.+=| +++|.++|++||+|+.+|.+|+.+..-. ....+ +.+.+.-.-+...++|++. ....+|
T Consensus 291 VvaTaGTT~tGaiDp---l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~--~~Gie~ADSit~D~HK~l~-~p~~cg 364 (539)
T PLN02590 291 ICATVGTTSSAAVDP---LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKF--IDGIENADSFNMNAHKWLF-ANQTCS 364 (539)
T ss_pred EEEEeCCCCCcccCC---HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHH--hcCCccCCEEEECchhhcC-cCcCEE
Confidence 444455788998877 8999999999999999999999755321 11111 1122222245667999996 888999
Q ss_pred EEEeeccccccCCchhHHHHHHH-----------HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRI-----------VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
.+.+++.............+... ........-.+.....-..|+..+.+.++++.++.-+..+++.+.+
T Consensus 365 ~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l 444 (539)
T PLN02590 365 PLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYV 444 (539)
T ss_pred EEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887642100000000001100 0001111122222223333333445667888888888899999999
Q ss_pred HhC-CCeeeCCCCceEEEEEcCCC--Ch-------HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec---CHHHHHH
Q 013521 366 QSL-GLKVNGGKNAPYVWVQFPGS--SS-------WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG---HREYISE 432 (441)
Q Consensus 366 ~~~-g~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~---~~~~~~~ 432 (441)
++. ++++..++.-..+++++.+. .. .++.+++.+...+.+.+. .. .+..++|+++.+ ++++++.
T Consensus 445 ~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t-~~--~g~~~lR~~i~n~~T~~~dv~~ 521 (539)
T PLN02590 445 AQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHT-AL--SGKFVLRFAVGAPLTEEKHVTE 521 (539)
T ss_pred hcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEee-EE--CCEEEEEEEecCCCCCHHHHHH
Confidence 887 78887766666777877421 11 234455554433444332 22 245689999744 6899999
Q ss_pred HHHHHHhh
Q 013521 433 ACRRLKNF 440 (441)
Q Consensus 433 ~l~~l~~~ 440 (441)
+++.|.+.
T Consensus 522 ~~~~i~~~ 529 (539)
T PLN02590 522 AWQIIQKH 529 (539)
T ss_pred HHHHHHHH
Confidence 99998763
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-11 Score=131.92 Aligned_cols=339 Identities=14% Similarity=0.097 Sum_probs=191.8
Q ss_pred CCCCeEEeCCCCCCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 70 PDARLIRLGIGDTTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
.++.++|+..|...+. .+|.+.+++.+.+..... ...|. .....++.+.+++. .+-..+.+++++++++|.
T Consensus 583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~---~~~~~-~~~~~elae~L~~~----~p~~~~~v~f~~SGsEA~ 654 (972)
T PRK06149 583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNT---NSRFH-YAAVAEFSERLAAL----APDGLDTVFLVNSGSEAN 654 (972)
T ss_pred CCCEEEECCCCccccCCCCHHHHHHHHHHHHhccc---ccccc-CHHHHHHHHHHHHh----CCCCcCEEEEeCCchHHH
Confidence 3567888886654443 789999999998875421 11221 12233444444443 232346899999999998
Q ss_pred HH-HH--HhcCCCCEEEEeCCCchhhHhHHHHh-cc----ccccccccCccceeEEeecCC--CCCcc---------CC-
Q 013521 149 SR-LQ--MLLGSNVTVAVQDPSFPAYIDTSVIV-GQ----AGKFLKETGKYRNIVYMNCRP--ENNFF---------PD- 208 (441)
Q Consensus 149 ~~-l~--~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~----~~~~~~~~~~~~~v~~v~~~~--~~~~~---------~~- 208 (441)
.. +. ........|+...-+|++....+... +. ....... . ..+..++... ...+. .+
T Consensus 655 e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~-~--~~v~~~~~p~~~~~~~~~~~~~~~~~~~~ 731 (972)
T PRK06149 655 DLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETR-P--DWVHPVESPNTYRGRFRGADSAADYVRDV 731 (972)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCC-C--CCeEEeCCCcccCCcCCCcccHHHHHHHH
Confidence 86 42 22334467888888898754332111 10 0000000 0 0112221110 00010 01
Q ss_pred ---CC----CCCCccEEEEcCC-CCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCccee
Q 013521 209 ---LS----TTSRTDIIFFCSP-NNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVA 278 (441)
Q Consensus 209 ---~~----~~~~~~~v~i~~p-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~ 278 (441)
++ ...++.+ +|..| +...| ...|++.+++|.++|++||+++|.||++..|...+. ......+.-.+|
T Consensus 732 ~~~l~~~~~~~~~iAa-vI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PD-- 808 (972)
T PRK06149 732 VAQLEELDASGRGLAG-FICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPD-- 808 (972)
T ss_pred HHHHHHHhhcCCceEE-EEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCC--
Confidence 11 1134445 44566 33344 557899999999999999999999999976644332 112222222344
Q ss_pred EEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHH-HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 013521 279 IEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNR-IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKEN 357 (441)
Q Consensus 279 i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 357 (441)
|+ +++|.+| .|+.+|.+++++++. +.+.. .....+.+.++++..++.+.|+--.. +++.+..++.
T Consensus 809 iv--t~gK~lg-~G~Pl~av~~~~~i~--------~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~---e~l~~~~~~~ 874 (972)
T PRK06149 809 II--TMAKGMG-NGHPLGAVITRREIA--------EALEAEGYFFSSTGGSPVSCRIGMAVLDVLRE---EKLQENARRV 874 (972)
T ss_pred EE--Eeccccc-CCeeeEEEEEcHHHH--------hhhccCCcccCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHH
Confidence 32 7899998 899999999988773 33321 01112235688888888888762111 2344455555
Q ss_pred HHHHHHHHHhC----CCeeeCCCCceEEEEEcCC------CC---hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--
Q 013521 358 AKIIVDAFQSL----GLKVNGGKNAPYVWVQFPG------SS---SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS-- 422 (441)
Q Consensus 358 ~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~------~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls-- 422 (441)
-+++.+.|+++ ++......-|.++-+++.. .. ...+...+++ +||.+.|.. ...+.+||.
T Consensus 875 G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~-~Gvl~~~~g----~~~~vl~~~Pp 949 (972)
T PRK06149 875 GDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLE-LGVIMQPTG----DHLNILKIKPP 949 (972)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHh-CCeEEeecC----CCCCEEEEECC
Confidence 55566655543 3221111246666666631 01 1234555555 599998742 124679987
Q ss_pred eecCHHHHHHHHHHHHhhC
Q 013521 423 AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 423 ~~~~~~~~~~~l~~l~~~l 441 (441)
+..+++++++++++|.+++
T Consensus 950 l~it~~~id~~~~~l~~~l 968 (972)
T PRK06149 950 LCLDRESADFFVDMLDRVL 968 (972)
T ss_pred CcCCHHHHHHHHHHHHHHH
Confidence 5679999999999998764
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-11 Score=118.47 Aligned_cols=343 Identities=11% Similarity=0.063 Sum_probs=188.5
Q ss_pred CCCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-C-CcE-EEcCC
Q 013521 70 PDARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-G-DEI-FISDG 143 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~-~~I-~~t~G 143 (441)
.++.++|+..|.. .+ ..+|.+.+++++.+.+.. .....+ -..+.+..+|+.+....+-. . ..+ +++++
T Consensus 56 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~--~~~~~~----~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~S 129 (459)
T PRK06931 56 EGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGL--PLHTLD----LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPS 129 (459)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhc--cccccc----cCCHHHHHHHHHHHHhCCCccccceEEEeCCC
Confidence 4567888877742 22 367889999999886411 000111 12345556666664422211 1 134 55678
Q ss_pred cHHHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCCC--cc-----------
Q 013521 144 AQSDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPENN--FF----------- 206 (441)
Q Consensus 144 ~~~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~~--~~----------- 206 (441)
+++|... + .......+.|+...-+|++....+........... .......+..+|...... +.
T Consensus 130 GsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (459)
T PRK06931 130 GADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALT 209 (459)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHH
Confidence 8888875 4 22334457899999999997655553321110000 000001233333221000 00
Q ss_pred ---CC-CC----CCCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 207 ---PD-LS----TTSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 207 ---~~-~~----~~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
.+ ++ ...++.+++ .-| +.-.|.+ .|++.++++.++|++||+++|.||+...|...+.......+.-.||
T Consensus 210 ~~~~~~~~~~~~~~~~iAAvI-~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PD 288 (459)
T PRK06931 210 YYFENFIEDVESGVRKPAAVI-LEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPD 288 (459)
T ss_pred HHHHHHHHhhhcCCCceEEEE-EccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCC
Confidence 00 00 012355544 466 4445654 5799999999999999999999999987754432211112222355
Q ss_pred eeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013521 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE 356 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 356 (441)
|-+++|.++ .|+.+|.++++++. +.+.......+++.++++..++.+.|+.-.. +...++.++
T Consensus 289 ----ivt~gK~l~-gG~Pi~av~~~~~~---------~~~~~~~~~~T~~gnpla~aaala~L~~l~~---~~l~~~~~~ 351 (459)
T PRK06931 289 ----IIVMSKAVG-GGLPLAVLGIKKEF---------DAWQPGGHTGTFRGNQLAMATGLTTLKILKE---ENLAQNAAE 351 (459)
T ss_pred ----EEEeccccc-CCcceeeeeeHHHH---------hhccCCCCCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHH
Confidence 345799998 88999987776542 1221112233445788888888888762111 223344444
Q ss_pred HHHHHHHHHHh----CCCeeeCCCCceEEEEEcCCC------------C---hHHHHHHHHHhcCeEEeCCCCcCCCCCC
Q 013521 357 NAKIIVDAFQS----LGLKVNGGKNAPYVWVQFPGS------------S---SWDVFAEILEKTHILTIPGSGFGPGGNE 417 (441)
Q Consensus 357 ~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 417 (441)
.-+++.+.|++ +++....-.-|.++-+++... + ...+...++ ++||.+.+... ..+
T Consensus 352 ~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~~----~~~ 426 (459)
T PRK06931 352 RGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACF-ENGLLLERGGR----NGN 426 (459)
T ss_pred HHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHH-HCCcEEeecCC----CCC
Confidence 44444444443 333211112466666666311 0 122344444 45999977432 246
Q ss_pred eEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 418 HIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 418 ~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+|+. +..+++++++++++|.++|
T Consensus 427 ~l~~~Ppl~it~~eid~~~~~l~~~l 452 (459)
T PRK06931 427 VVRLLPPLLITQAECEEFIDRFEQAL 452 (459)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHH
Confidence 78877 4568999999999998764
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-11 Score=121.45 Aligned_cols=341 Identities=9% Similarity=0.018 Sum_probs=181.3
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|- ..+ ..+|.+.+++.+.+.++...... + .+..+....+++.+....+-..+.+++++++++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~--~---~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGse 126 (460)
T PRK12403 52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMF--F---HTTHPAVIELSELLFSLLPGHYSHAIYTNSGSE 126 (460)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecc--c---ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHH
Confidence 356788876552 112 26789999999999864311111 1 112233444444443323333478999999999
Q ss_pred HHHH-HHHh--c-----CCCC-EEEEeCCCchhhHhHHHH-hccccccccccCccceeEEeecCCC----CCc-------
Q 013521 147 DISR-LQML--L-----GSNV-TVAVQDPSFPAYIDTSVI-VGQAGKFLKETGKYRNIVYMNCRPE----NNF------- 205 (441)
Q Consensus 147 al~~-l~~l--~-----~~gd-~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~v~~v~~~~~----~~~------- 205 (441)
|... +... . ++++ .|+...-+|++....... .+.... .........+..+|.... .+.
T Consensus 127 A~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 205 (460)
T PRK12403 127 ANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFM-HEMGGLIPDVAHIDEPYWYANGGELTPAEFGR 205 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccc-cccCCCCCCCEEeCCCcccccccCCChHHHHH
Confidence 9886 4222 1 2333 455566688875332222 221100 000000001222321100 000
Q ss_pred --cCCCCC------CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCc
Q 013521 206 --FPDLST------TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR 275 (441)
Q Consensus 206 --~~~~~~------~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~ 275 (441)
..++++ ..++.+|+ ..| +.--|.+ .+++.+++|.++|++||+++|.||++..|...+.......+.-.|
T Consensus 206 ~~~~~le~~~~~~~~~~iaavI-~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~P 284 (460)
T PRK12403 206 RAALQLEEKILELGAENVAGFV-AEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEP 284 (460)
T ss_pred HHHHHHHHHHHHhCCCceEEEE-EccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCC
Confidence 001111 13444544 466 5555765 578899999999999999999999998664443221222222234
Q ss_pred ceeEEEecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHH----HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHH
Q 013521 276 EVAIEISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNR----IVCTCFNGASNIVQAGGLACLSPDGFQALRTV 350 (441)
Q Consensus 276 ~~~i~i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 350 (441)
| |+ +++|.+| .|. .+|.+++++++. +.+.. .....+.+.++++..++.+.|+.-.. +..
T Consensus 285 D--iv--~~gK~lg-gG~~Piga~v~~~~i~--------~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~---~~l 348 (460)
T PRK12403 285 D--TL--SIAKGLT-SGYVPMGGLVLSKRIA--------EALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRD---EGV 348 (460)
T ss_pred C--eE--EEccccc-ccccceEEEEECHHHH--------HHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh---ccH
Confidence 4 33 4899998 784 899888887762 33321 11223444678888888887762111 123
Q ss_pred HHHHH-HHHHHHHHHHH----hCCCeeeCCCCceEEEEEcCCC-------C-hHH----HHHHHHHhcCeEEeCCCCcCC
Q 013521 351 IDYYK-ENAKIIVDAFQ----SLGLKVNGGKNAPYVWVQFPGS-------S-SWD----VFAEILEKTHILTIPGSGFGP 413 (441)
Q Consensus 351 ~~~~~-~~~~~l~~~L~----~~g~~~~~~~~~~~~~~~~~~~-------~-~~~----~~~~ll~~~gi~v~pg~~f~~ 413 (441)
.+..+ ++-+++.+.|+ ++++.......|.++.+++... . ... +...++ ++|+.+.+.
T Consensus 349 ~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~----- 422 (460)
T PRK12403 349 VTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGF-EEGVIIRST----- 422 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHH-hCCEEEEec-----
Confidence 33442 44444444444 3333221112466666666310 1 011 223334 459999752
Q ss_pred CCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 414 GGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 414 ~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+.+|++ +..+++++++++++|.++|
T Consensus 423 --~~~~~l~Ppl~it~~eid~~~~~l~~al 450 (460)
T PRK12403 423 --LGRMIMAPALVAGRAEIDELVDKTRIAV 450 (460)
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 1347888 3458999999999998764
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-11 Score=118.61 Aligned_cols=343 Identities=10% Similarity=0.036 Sum_probs=188.9
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC---CCcEEEc-C
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE---GDEIFIS-D 142 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~---~~~I~~t-~ 142 (441)
.++.++|+..|- ..+ ..+|.+.+++++.+.+... .....+ . .+.+..+|+.+....+-. .+.++++ +
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~-~----~~~~~~la~~L~~~~p~~~~~~~~v~f~~~ 134 (464)
T PRK06938 61 EGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELP-LHTLDL-T----TPVKDQFVQDLFASLPEAFAREAKIQFCGP 134 (464)
T ss_pred CCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhc-cccccc-C----CHHHHHHHHHHHHhCcccccccceEEEeCC
Confidence 466788886664 222 3678999999998863211 000112 1 234444555543312211 1356564 6
Q ss_pred CcHHHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCCC--cc----------
Q 013521 143 GAQSDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPENN--FF---------- 206 (441)
Q Consensus 143 G~~~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~~--~~---------- 206 (441)
++++|... + ........+|+...-+|++....+........... .......+..++...... +.
T Consensus 135 SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 214 (464)
T PRK06938 135 TGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRAN 214 (464)
T ss_pred CcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHH
Confidence 77888775 3 22233446888889999997544443221100000 000001223333321100 00
Q ss_pred CC-CCC----C----CCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCc
Q 013521 207 PD-LST----T----SRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR 275 (441)
Q Consensus 207 ~~-~~~----~----~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~ 275 (441)
.+ +++ . .++.+|+ ..| +.--|.+ .|.+.++++.++|++||+++|.||+...|...+.......++-.|
T Consensus 215 ~~~l~~~i~~~~~~~~~iAAvI-~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~P 293 (464)
T PRK06938 215 LHYLENLLDDPESGVVLPAAVI-LEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIP 293 (464)
T ss_pred HHHHHHHHHhhccCCCceEEEE-EccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCC
Confidence 00 110 0 1355544 466 4445665 569999999999999999999999998775443211122222235
Q ss_pred ceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013521 276 EVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYK 355 (441)
Q Consensus 276 ~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 355 (441)
| |-+++|.+| .|+.+|.+++++++ . .+.......+++.++++..++.+.|+.-.. +++.++.+
T Consensus 294 D----iv~~gKglg-gG~PlsAv~~~~~~-~--------~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~---~~l~~~~~ 356 (464)
T PRK06938 294 D----VVVLSKAIG-GSLPLAVVVYREWL-D--------TWQPGAHAGTFRGNQMAMAAGSATLRYIKE---HRLAEHAA 356 (464)
T ss_pred C----EEEeecccc-CCCceEEEeehhHh-h--------ccCCCCCCCCCCcCHHHHHHHHHHHHHHHH---hHHHHHHH
Confidence 5 334799998 89999999987653 1 111111233445788888888888862111 23444555
Q ss_pred HHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCCC------------C---hHHHHHHHHHhcCeEEeCCCCcCCCCC
Q 013521 356 ENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGS------------S---SWDVFAEILEKTHILTIPGSGFGPGGN 416 (441)
Q Consensus 356 ~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~ll~~~gi~v~pg~~f~~~~~ 416 (441)
+.-+++.+.|+++ ++......-|.++-+++... + ...+...++ ++|+.+.++.. ..
T Consensus 357 ~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~g~----~~ 431 (464)
T PRK06938 357 AMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECL-RRGLILELGGR----HG 431 (464)
T ss_pred HHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHH-HCCeEEeecCC----CC
Confidence 5555555555543 32211112466666766311 0 123445555 46999987432 13
Q ss_pred CeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 417 EHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 417 ~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+.||+. +..++++++++++++.+++
T Consensus 432 ~~l~~~Ppl~it~~eid~~~~~l~~~l 458 (464)
T PRK06938 432 SVVRFLPPLIITAEQIDEVAEIFAEAV 458 (464)
T ss_pred CEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 578987 4568999999999998764
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.49 E-value=8e-12 Score=123.38 Aligned_cols=340 Identities=9% Similarity=0.018 Sum_probs=182.2
Q ss_pred CCCCeEEeCCCCCC--C-CCcHHHHHHHHHH--HhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCc
Q 013521 70 PDARLIRLGIGDTT--Q-PIPDIITSAMAEH--AFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGA 144 (441)
Q Consensus 70 ~~~~~i~l~~g~~~--~-~~~~~~~~al~~~--~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~ 144 (441)
.++.++|+..|-.. + ..+|.+.+++.+. ...+. ....|.. ....++-+.+++.+.+..+-..+.+++++++
T Consensus 56 dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~---~~~~~~~-~~~~~la~~l~~~l~~~~p~~~~~v~f~~SG 131 (464)
T TIGR00699 56 DGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLI---NRPALGN-FPSKDWAKILKEGILKVAPKGQDQVWTGMSG 131 (464)
T ss_pred CCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhc---ccccCCc-HHHHHHHHHHHHhHHhhCCCCcCEEEEeCCc
Confidence 45678888776432 2 3678999999974 22211 1112321 1223344444432222222233689999999
Q ss_pred HHHHHH-HHHh--c-C-----------------------C---CCEEEEeCCCchhhHhHHHHhccccccccccCcccee
Q 013521 145 QSDISR-LQML--L-G-----------------------S---NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNI 194 (441)
Q Consensus 145 ~~al~~-l~~l--~-~-----------------------~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v 194 (441)
++|+.. +... . . + ...|+....+|++....+..................+
T Consensus 132 sEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~ 211 (464)
T TIGR00699 132 SDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDW 211 (464)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCc
Confidence 999986 4211 1 1 1 1279999999999755444332111000000000111
Q ss_pred EEeecCCC----CCc----------cC-CCC----C-CCCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEE
Q 013521 195 VYMNCRPE----NNF----------FP-DLS----T-TSRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVY 252 (441)
Q Consensus 195 ~~v~~~~~----~~~----------~~-~~~----~-~~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~ 252 (441)
..+|.... ... .. .++ . ..++.+|++ .| +.-.|.+. +++.+++|.++|++||+++|.
T Consensus 212 ~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~-EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~ 290 (464)
T TIGR00699 212 PQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIV-EPIQSEGGDNHASPDFFRKLRDITKKHNVAFIV 290 (464)
T ss_pred eecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEE-eCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 22222110 000 00 011 1 134566554 55 55568766 799999999999999999999
Q ss_pred cccccccccCCCCCcccccCC--CcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHH
Q 013521 253 DSAYAAYITDPSPRSIYEIPG--AREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNI 330 (441)
Q Consensus 253 De~~~~~~~~~~~~~~~~~~~--~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (441)
||++..|...+.......++- .+| +.+++|.+| .| |+++..+ .+ ..........+...+++
T Consensus 291 DEV~tGfGrtG~~fa~e~~gv~~~PD----i~t~gK~lg-~g---G~~~~~~-~~--------~~~~~~~~~~T~~gnp~ 353 (464)
T TIGR00699 291 DEVQTGVGATGKFWAHEHWNLDDPPD----MVTFSKKFQ-TA---GYFFHDP-AF--------RPNKPYRQFNTWMGDPS 353 (464)
T ss_pred eeeeeCCCCCcchhHHHhcCCCCCCC----EEEehhhhc-cC---Cccccch-hc--------cCCCCcccccCCCCCHH
Confidence 999987644332111111211 144 356899985 32 4444332 21 00011112234446777
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC----C--C-eeeCCCCceEEEEEcCCC-ChHHHHHHHHHhcC
Q 013521 331 VQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL----G--L-KVNGGKNAPYVWVQFPGS-SSWDVFAEILEKTH 402 (441)
Q Consensus 331 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g--~-~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~g 402 (441)
+..++.+.|+.-. -+++.++.++.-+++.+.|+++ . + .+.....|.++-++++.. ....+...+++ +|
T Consensus 354 ~~aaa~a~L~~l~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~~~~~i~~~~~~-~G 429 (464)
T TIGR00699 354 RALILREIIQEIK---RKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEAKRDKLLKKARN-NG 429 (464)
T ss_pred HHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCHHHHHHHHHHHHH-CC
Confidence 7777776665211 1233444444455555555543 2 1 111113577777777532 13445566565 59
Q ss_pred eEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 403 ILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 403 i~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+.+.+. +.+.|||. +..+++++++++++|.+++
T Consensus 430 vl~~~~------g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 430 VNIGGC------GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred cEEecC------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 999763 34679998 4669999999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-11 Score=123.10 Aligned_cols=175 Identities=15% Similarity=0.156 Sum_probs=114.3
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH-HHHhcccccc
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT-SVIVGQAGKF 184 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~ 184 (441)
+.+...+.|...--+..|+.+ +|.+ .--+++||+|.++.+ +++++.+||.|+++..+|-+..+. ..+.|
T Consensus 166 LddL~~~eG~i~eAq~~AA~~---fgAd-~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsG----- 236 (720)
T PRK13578 166 LGDLLIHEGAAKDAQKHAAKV---FNAD-KTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAG----- 236 (720)
T ss_pred CCCCCCCChHHHHHHHHHHHH---hCCC-ceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcC-----
Confidence 333334555544444444443 3643 578899999999987 788999999999999999999885 77888
Q ss_pred ccccCccceeEEeecCCC-CCc----cCC------C----CCC-C------C-ccEEEEcCCCCccccCCCHHHHHHHHH
Q 013521 185 LKETGKYRNIVYMNCRPE-NNF----FPD------L----STT-S------R-TDIIFFCSPNNPTGHAATWQQLKKLVE 241 (441)
Q Consensus 185 ~~~~~~~~~v~~v~~~~~-~~~----~~~------~----~~~-~------~-~~~v~i~~p~NPtG~~~~~~~~~~i~~ 241 (441)
+.++++....+ .++ .++ + .+. + + .++++|++|++ -|.+++ +++|++
T Consensus 237 -------a~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~ 305 (720)
T PRK13578 237 -------ATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVD 305 (720)
T ss_pred -------CeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHH
Confidence 45666554331 111 110 0 011 1 2 58899988877 799999 778888
Q ss_pred H-HHHcCcEEEEccccccc-ccCC----CCCcccccCCCcceeEEEecCCcccCCccce-eEEEEeeccc
Q 013521 242 F-AKANGSIIVYDSAYAAY-ITDP----SPRSIYEIPGAREVAIEISSFSKFAGFTGVR-LGWTVVPEEL 304 (441)
Q Consensus 242 ~-a~~~~~~ii~De~~~~~-~~~~----~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r-~G~l~~~~~~ 304 (441)
. ++.++ +|++||+|+.+ .|.+ .|.+.......+..++.+.|.+|.++ ++- .+++...++.
T Consensus 306 ~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~--alTQaS~LHvk~~~ 372 (720)
T PRK13578 306 KIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQA--GFSQTSQIHKKDNH 372 (720)
T ss_pred HhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcch--hhhhHhhhhcCCcc
Confidence 7 67788 99999999864 3333 12222233222344699999999984 544 4466665543
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-11 Score=130.11 Aligned_cols=338 Identities=12% Similarity=0.045 Sum_probs=192.3
Q ss_pred CCCeEEeCCCCCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 71 DARLIRLGIGDTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 71 ~~~~i~l~~g~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
++..+|+..|...+ ..+|.+.+++.+.+.+.. ....|. . +....+|+.|....+-..+.+++++++++|..
T Consensus 623 G~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~---~~~~~~-~----~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e 694 (1013)
T PRK06148 623 GRAYLDCFNNVCHVGHAHPRVVAAAARQAARLN---TNTRYL-H----DAIVAYAERLTATLPDGLTVAFFVNSGSEANS 694 (1013)
T ss_pred CCEEEEcccChhhcCCCCHHHHHHHHHHHhhcC---CcCCcC-C----HHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHH
Confidence 45677887665333 368999999999887642 112332 2 23344555444323323468899999999988
Q ss_pred H-H--HHhcCCCCEEEEeCCCchhhHhHHHHhcc-c---cccccccCccceeEEeecCC--CCCcc-----------CCC
Q 013521 150 R-L--QMLLGSNVTVAVQDPSFPAYIDTSVIVGQ-A---GKFLKETGKYRNIVYMNCRP--ENNFF-----------PDL 209 (441)
Q Consensus 150 ~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~-~---~~~~~~~~~~~~v~~v~~~~--~~~~~-----------~~~ 209 (441)
. + .........|+...-+|++....+..... . ....... ..+..++... ...+. .++
T Consensus 695 ~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 771 (1013)
T PRK06148 695 LALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRP---DHVEVAEVPDSYRGPERWPDAEHGRRFAESV 771 (1013)
T ss_pred HHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCC---CCceEcCCCCccccCCCCChhhhHHHHHHHH
Confidence 6 3 22233456788889999886543322211 0 0000000 0111111100 00000 001
Q ss_pred ----C---C-CCCccEEEEcCC-CCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCccee
Q 013521 210 ----S---T-TSRTDIIFFCSP-NNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVA 278 (441)
Q Consensus 210 ----~---~-~~~~~~v~i~~p-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~ 278 (441)
+ . ..++.+++ ..| +.--| ...|++.++++.++|++||+++|.||+...|...+. ......+.-.||
T Consensus 772 ~~~i~~~~~~~~~iAAvI-~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PD-- 848 (1013)
T PRK06148 772 AEQIAAMAAKGRGPAFFI-AESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPD-- 848 (1013)
T ss_pred HHHHHhhhccCCceEEEE-EcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcc--
Confidence 1 1 13455544 455 33345 456899999999999999999999999987644332 111222222345
Q ss_pred EEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHH-HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 013521 279 IEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI-VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKEN 357 (441)
Q Consensus 279 i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 357 (441)
|-+++|.+| .|+.+|.+++++++. +.+..- ....+++.++++..++.+.|+.-.. +.+.+..++.
T Consensus 849 --ivt~gK~lg-gG~Plgav~~~~ei~--------~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~---e~l~~~~~~~ 914 (1013)
T PRK06148 849 --IVTMGKPIG-NGHPMGAVVTTREIA--------DSFDNGMEYFNTFGGNPVSCAIGLAVLDIIED---EDLQRNALEI 914 (1013)
T ss_pred --eeeeccccc-CCcceEEEEEcHHHH--------hhccCCCccccCCCCCHHHHHHHHHHHHHHhh---ccHHHHHHHH
Confidence 356899998 899999999988773 322211 1123445688888888887762111 2344455555
Q ss_pred HHHHHHHHHhC----CCeeeCCCCceEEEEEcCCC-----C----hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--
Q 013521 358 AKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGS-----S----SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS-- 422 (441)
Q Consensus 358 ~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls-- 422 (441)
-++|.+.|+++ ++......-|.++-+++... . ...+...++ ++||.+.+... ..+.+||.
T Consensus 915 G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g~----~~~vlr~~Pp 989 (1013)
T PRK06148 915 GNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGAR-ERGILIGTEGP----HDNVLKIRPP 989 (1013)
T ss_pred HHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHH-hCCeEEeccCC----CCCEEEEeCC
Confidence 55665555543 32111112466666666411 1 123444545 46999976421 24678888
Q ss_pred eecCHHHHHHHHHHHHhhC
Q 013521 423 AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 423 ~~~~~~~~~~~l~~l~~~l 441 (441)
+..+++++++++++|.+++
T Consensus 990 l~it~~~id~~l~~l~~~l 1008 (1013)
T PRK06148 990 LIFSRADADHLLEVLDDVL 1008 (1013)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 4568999999999998764
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.2e-11 Score=122.73 Aligned_cols=306 Identities=13% Similarity=0.112 Sum_probs=187.0
Q ss_pred CCCCCCC---cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH---HHhc-----CCCCEEEEeCCCchhhHhHH
Q 013521 107 YKGYGAE---QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL---QMLL-----GSNVTVAVQDPSFPAYIDTS 175 (441)
Q Consensus 107 ~~~Y~~~---~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l---~~l~-----~~gd~Vlv~~p~y~~~~~~~ 175 (441)
++-|.|. +|..++...+..|+.+-.|.+.-.+...+|++.-...+ .... ...+.|+++.-.|......+
T Consensus 516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa 595 (939)
T TIGR00461 516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASA 595 (939)
T ss_pred cCCCCchHHhHHHHHHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHH
Confidence 5556654 67888888888888876666644444444454322222 2211 13467999999997777777
Q ss_pred HHhccccccccccCccceeEEeecCCCCCccCC-CCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcE
Q 013521 176 VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSI 249 (441)
Q Consensus 176 ~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ 249 (441)
...| .+++.++.+.++..+++ ++. ..++++|++++|+| +|.+-+ .+++|+++|+++|.+
T Consensus 596 ~~~G------------~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~ 660 (939)
T TIGR00461 596 AMAG------------MQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQ 660 (939)
T ss_pred HHCC------------CEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCE
Confidence 8888 58999998765544332 211 14888999999999 787753 388999999999999
Q ss_pred EEEcccccc-cccCCCCCcccccCCCcceeEEEecCCcccC----CccceeEEEEeeccccccCCch--hHH--------
Q 013521 250 IVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSKFAG----FTGVRLGWTVVPEELRYSNGYP--VIK-------- 314 (441)
Q Consensus 250 ii~De~~~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~----~~G~r~G~l~~~~~~~~~~~~~--~~~-------- 314 (441)
+++|.++.- ...-..| +..+-++++.|.+|+|+ ..|..+|++.+.+++... .+. +..
T Consensus 661 v~VDgAq~~al~~l~~P-------g~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~-lPg~~v~~t~d~~gre 732 (939)
T TIGR00461 661 VYLDGANMNAQVGLTSP-------GDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPF-LPKHDVVSMITGIGGS 732 (939)
T ss_pred EEEEecChhhCCCCCCc-------cccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhh-cCCCcccccccCCCCc
Confidence 999999853 1111111 12234599999999775 356668999998765311 000 000
Q ss_pred -HHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCce-E--EEEEcC---
Q 013521 315 -DFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG-KNAP-Y--VWVQFP--- 386 (441)
Q Consensus 315 -~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~-~--~~~~~~--- 386 (441)
.+.. .+....+ +......+...+...+.+.+++..+..-.+.+++.+.|++ ++++.-+ ..+. + +.++++
T Consensus 733 q~Iga-~s~~~~g-~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~ 809 (939)
T TIGR00461 733 KSIGS-VSAAPYG-SASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLK 809 (939)
T ss_pred ccccc-ccccccC-cHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchh
Confidence 0010 1111111 1122222333333345566778888888899999999987 4444322 2233 2 455654
Q ss_pred ---CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 387 ---GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 387 ---~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+....++.++|++. |+.-..- .|-..+.=.||.+-..++++++++++.|.++
T Consensus 810 ~~~g~~~~dIakrL~d~-G~hapt~-~~pv~g~lmiepTE~eskeelD~f~~al~~I 864 (939)
T TIGR00461 810 AKTGIEAIDVAKRLQDY-GFHAPTL-SFPVPGTLMVEPTESESLEELDRFCDAMIAI 864 (939)
T ss_pred hhcCCCHHHHHHHHHhC-Ceecccc-CCccCCeEEEEeeccCCHHHHHHHHHHHHHH
Confidence 24567888888876 9875432 2332222245555566889999999988654
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-14 Score=130.65 Aligned_cols=256 Identities=16% Similarity=0.169 Sum_probs=154.6
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEe
Q 013521 86 IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQ 164 (441)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~ 164 (441)
+.+.+.++|.++.. .. -.|+.+....+|.+.+++.+ +. +..+++++++.+-.+ +..+++|++.|++.
T Consensus 7 ~~~~m~~a~~~a~~-----gd-~~Yg~D~~~~~l~~~i~~l~----g~--e~a~f~~sGT~An~~al~~~~~~~~~vi~~ 74 (290)
T PF01212_consen 7 PTPAMLEAMAAANV-----GD-DAYGEDPTTARLEERIAELF----GK--EAALFVPSGTMANQLALRAHLRPGESVICA 74 (290)
T ss_dssp S-HHEEHHHHHTTS-----B--CCTTSSHHHHHHHHHHHHHH----TS--SEEEEESSHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHcccc-----CC-cccCCChhHHHHHHHHHHHc----CC--CEEEEeCCCChHHHHHHHHHHhcCCceecc
Confidence 45777888855332 22 26988889999999999987 43 455677777777776 77778999999999
Q ss_pred CCCchhhHhHH---HHhccccccccccCccceeEEeecCCCCCccCC-CCC--------CCCccEEEEcCCCCcc-ccCC
Q 013521 165 DPSFPAYIDTS---VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--------TSRTDIIFFCSPNNPT-GHAA 231 (441)
Q Consensus 165 ~p~y~~~~~~~---~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--------~~~~~~v~i~~p~NPt-G~~~ 231 (441)
.++|-...+.- ...| .+++.++..+.+.+.++ ++. ..++++|+|++|+|-. |+++
T Consensus 75 ~~aHi~~~E~ga~~~~~G------------~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~ 142 (290)
T PF01212_consen 75 DTAHIHFDETGAIEELSG------------AKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVY 142 (290)
T ss_dssp TTEHHHHSSTTHHHHHTT------------CEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB--
T ss_pred ccceeeeeccchhhHhcC------------cEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeC
Confidence 99876553332 2344 47888887653444432 211 1568999999999853 8999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCch
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYP 311 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~ 311 (441)
|.+++++|.++|++||+.++.|.+--.........++.++...-| ++--|++|.+++++ -+.++.+++++..
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D--~v~~~~tK~~g~~~--Gavl~~~~~~i~~---- 214 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGAD--SVSFGGTKNGGAPG--GAVLAGNKEFIAK---- 214 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSS--EEEEETTSTT-SSS--EEEEEESHHHHHH----
T ss_pred CHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCC--EEEEEEEccccccc--ceEEEechHHHHH----
Confidence 999999999999999999999998543222111223333322223 55557999988765 3566777775411
Q ss_pred hHHHHHHHHhhhcCCCcHHHH-----HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCce
Q 013521 312 VIKDFNRIVCTCFNGASNIVQ-----AGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAP 379 (441)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~-----~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 379 (441)
...+.+...........+.. .++...++.. .....+..++.+.+.+.|+..+..+..+..++
T Consensus 215 -~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l~~~-----~~~~~~~~~~A~~La~~l~~~~~~~~~~~~tn 281 (290)
T PF01212_consen 215 -ARRQRKRLGGGMRQAGVLAAAELYQFAALRALELW-----LERARHANAMAKRLAAGLEALGGVLPRPVETN 281 (290)
T ss_dssp -HHHHHHHHTHHHHHTTHHHHHHHHHHHHHCHEECS-----HHHHHCHHHHHHCHHHCHHEECEEEETTSS-H
T ss_pred -HHHHHHHhccCeeecceeeeechhhHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHCCCcccCCCCCc
Confidence 11111111111100112221 2333334321 34456667778899999998877665544443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-10 Score=123.82 Aligned_cols=335 Identities=13% Similarity=0.097 Sum_probs=192.8
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC---CcCcHHHHHHHHHHHhhhCCCCCCcEEEcC-CcHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA---EQGNMALRTAIADKFYKDMGIEGDEIFISD-GAQSD 147 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~-G~~~a 147 (441)
..+|-||.-. ...++.+.+.+.. ...+ ..++-|.| .+|..++...+.+|+.+..|.+ ++.+.. |++++
T Consensus 499 ~~~i~lGsct--~~~~p~~~~~~~~-~~~f---~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d--~~sl~~~~ga~g 570 (954)
T PRK05367 499 RSMIPLGSCT--MKLNAAAEMIPIT-WPEF---ANLHPFAPAEQAAGYRELIDQLEAWLAEITGYD--AVSLQPNAGAQG 570 (954)
T ss_pred cceeeCCcCC--CcCCHHHHHHHHh-Cccc---cccCCCChHHHHHHHHHHHHHHHHHHHHHHCCC--CEEECccHHHHH
Confidence 3466677632 2334443333322 1111 22444554 3577888888888888766654 455555 44444
Q ss_pred HHH-H---HHh-cCCCC----EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CC----C-C
Q 013521 148 ISR-L---QML-LGSNV----TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LS----T-T 212 (441)
Q Consensus 148 l~~-l---~~l-~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~----~-~ 212 (441)
... + ..+ .++|| .|++++..|++....+...| .+++.++.+.++..+.+ ++ . .
T Consensus 571 e~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G------------~~vv~v~~d~~G~iD~~~L~~~i~~~~ 638 (954)
T PRK05367 571 EYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAG------------MKVVVVACDENGNIDLDDLRAKAEEHA 638 (954)
T ss_pred HHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCC------------CEEEEECCCCCCCcCHHHHHHHHhccC
Confidence 422 2 222 25565 69999999988888888888 68999998765443322 21 1 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC---
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG--- 289 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~--- 289 (441)
.++.+|++++|++-.+...+ +++|+++|+++|+++++|.++......- .+...+ +-.++..|.+|+|+
T Consensus 639 ~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~~l--~~pg~~----GADi~~~s~HK~f~~P~ 709 (954)
T PRK05367 639 DNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMNAQVGL--ARPGDI----GADVSHLNLHKTFCIPH 709 (954)
T ss_pred CCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhhccCC--CChhhc----CCCEEEecCcccCCCCc
Confidence 35777888888775333456 8999999999999999999986321110 011112 23488999999975
Q ss_pred -CccceeEEEEeeccccccCCchhH-HHHHHHHhhhcCCCcHH----HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 013521 290 -FTGVRLGWTVVPEELRYSNGYPVI-KDFNRIVCTCFNGASNI----VQAGGLACLSPDGFQALRTVIDYYKENAKIIVD 363 (441)
Q Consensus 290 -~~G~r~G~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 363 (441)
..|-.+|++.+.+.+... .+... ..-..........++.. ....+...+...|.+.+++..+..-.+.+++.+
T Consensus 710 G~GGPg~G~l~vr~~l~p~-lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~ 788 (954)
T PRK05367 710 GGGGPGVGPIGVKAHLAPF-LPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAK 788 (954)
T ss_pred CCCCCceEEEeeccccccc-CCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 234558888887654310 00000 00000000001111222 222223333334556667777767788999999
Q ss_pred HHHhC-CCeeeCCCCce--EEEEEc---C---CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHH
Q 013521 364 AFQSL-GLKVNGGKNAP--YVWVQF---P---GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISE 432 (441)
Q Consensus 364 ~L~~~-g~~~~~~~~~~--~~~~~~---~---~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~ 432 (441)
.|++. .+.+..+.+-. =..+++ + +....++.++|. ++|+....-+ | + .++.+||+. ..+++++++
T Consensus 789 ~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~-d~G~~~~t~~-~-p-v~~~l~i~ptE~~s~~elDr 864 (954)
T PRK05367 789 RLKDHYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLI-DYGFHAPTMS-F-P-VAGTLMVEPTESESKAELDR 864 (954)
T ss_pred HHHhhcCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHH-HCCCeEeecC-C-c-cCCEEEEEeeecCCHHHHHH
Confidence 99774 44443321111 123333 3 235577878875 5599876532 3 2 367889886 558899999
Q ss_pred HHHHHHhh
Q 013521 433 ACRRLKNF 440 (441)
Q Consensus 433 ~l~~l~~~ 440 (441)
+++.|..+
T Consensus 865 ~~~al~~i 872 (954)
T PRK05367 865 FCDAMIAI 872 (954)
T ss_pred HHHHHHHH
Confidence 99998764
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-11 Score=124.28 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=108.0
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGK 190 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~ 190 (441)
.+.|...--|..|+.+ +|.+ .-.+++||++.++.+ +++++.+||.|+++..+|-+..+.+.+.|
T Consensus 192 ~~~G~i~eAe~~AA~~---fgAd-~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsg----------- 256 (714)
T PRK15400 192 DHSGPHKEAEEYIARV---FNAD-RSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSD----------- 256 (714)
T ss_pred CCChHHHHHHHHHHHH---hCCC-cEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcC-----------
Confidence 3445444334443333 3543 578899999999887 78889999999999999999999988888
Q ss_pred cceeEEeecCCC-CCc----c-----CC-----CCCCCCcc---EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEE
Q 013521 191 YRNIVYMNCRPE-NNF----F-----PD-----LSTTSRTD---IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVY 252 (441)
Q Consensus 191 ~~~v~~v~~~~~-~~~----~-----~~-----~~~~~~~~---~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 252 (441)
+.+++++...+ .++ . ++ +...++.+ .++|++|++ -|.+++ +++|++.|+.++ |++
T Consensus 257 -a~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~~--ilv 329 (714)
T PRK15400 257 -VTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY-DGLLYN---TDFIKKTLDVKS--IHF 329 (714)
T ss_pred -CeEEEecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC-ccEecC---HHHHHHHhCCCC--EEE
Confidence 46666654331 111 1 10 11123333 788888855 899999 677788887776 789
Q ss_pred ccccccc-ccCCC-C-Cccccc-CCCcceeEEEecCCcccCCcccee-EEEEeec
Q 013521 253 DSAYAAY-ITDPS-P-RSIYEI-PGAREVAIEISSFSKFAGFTGVRL-GWTVVPE 302 (441)
Q Consensus 253 De~~~~~-~~~~~-~-~~~~~~-~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~ 302 (441)
||+|+.+ .|.+. + .+.... ...++.++.+.|.+|.+ +++.- +++....
T Consensus 330 DEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL--~alTQaS~LHvkg 382 (714)
T PRK15400 330 DSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLL--AAFSQASMIHVKG 382 (714)
T ss_pred EccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhcc--cchhHHhHHHHcC
Confidence 9999864 33332 1 222221 11124569999999998 45543 3444433
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-10 Score=115.18 Aligned_cols=313 Identities=12% Similarity=0.075 Sum_probs=182.1
Q ss_pred CCCCCCcCcHHHHHHHHHHHhhhCCCC-----------C--CcEEEcCCcHHHHHH-HH----HhcC-------------
Q 013521 108 KGYGAEQGNMALRTAIADKFYKDMGIE-----------G--DEIFISDGAQSDISR-LQ----MLLG------------- 156 (441)
Q Consensus 108 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~-----------~--~~I~~t~G~~~al~~-l~----~l~~------------- 156 (441)
..|...+...++.+.+.+|+.+.++-. + ..-++|+|++.+... +. ..+.
T Consensus 119 ~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl 198 (522)
T TIGR03799 119 VKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGL 198 (522)
T ss_pred ceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccc
Confidence 345556678899999999997744311 1 235778888887543 31 1221
Q ss_pred ---------CCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC------CCCccEEEE
Q 013521 157 ---------SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST------TSRTDIIFF 220 (441)
Q Consensus 157 ---------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~------~~~~~~v~i 220 (441)
++..|++.+-.|.++...+..+|. |. .+++.+|++.++..+++ +++ ..+++.+.+
T Consensus 199 ~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lgl-g~--------~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~v 269 (522)
T TIGR03799 199 FAALKHYGYDGLAILVSERGHYSLGKAADVLGI-GR--------DNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAI 269 (522)
T ss_pred hhhhhhccCCceEEEECCCchHHHHHHHHHcCC-Cc--------ccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEE
Confidence 234688888999999988888883 11 26888999865444332 111 134555555
Q ss_pred c--CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 221 C--SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 221 ~--~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+ ..++.||.+-| +++|+++|+++|+++++|.+|+....-. ....+ +.+......+..|.+|+++ ....+|.
T Consensus 270 vataGtt~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~--l~gle~aDSit~d~HK~l~-~P~g~G~ 343 (522)
T TIGR03799 270 VGVAGTTETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHL--LKGIERADSVTIDAHKQLY-VPMGAGM 343 (522)
T ss_pred EEEecCcCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHH--hcCchhCCEEEEChhhcCC-cCcccEE
Confidence 5 44678999999 8899999999999999999998533211 01111 1222233478889999775 5677999
Q ss_pred EEeeccccccCCchhHHHHH-----HHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 013521 298 TVVPEELRYSNGYPVIKDFN-----RIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK 371 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 371 (441)
++.++.............+. ........+.-.......-+.++..+...++.+.++..+.++++.+.|++. +++
T Consensus 344 llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~e 423 (522)
T TIGR03799 344 VLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFE 423 (522)
T ss_pred EEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 98876432100000000000 000001111111111122233332233556888888899999999999887 888
Q ss_pred eeCCCCceEEEEEcCCCC----------------h-------HHHHHHHHHhcCeEEeCCC-----CcCCCCCCeEEEEe
Q 013521 372 VNGGKNAPYVWVQFPGSS----------------S-------WDVFAEILEKTHILTIPGS-----GFGPGGNEHIRVSA 423 (441)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~----------------~-------~~~~~~ll~~~gi~v~pg~-----~f~~~~~~~iRls~ 423 (441)
+..++.-..+.+++.+.. . ..+.+++.++ |....... .+...+...+|+++
T Consensus 424 l~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~-G~~~vs~t~l~~~~~~g~~~~~lR~~~ 502 (522)
T TIGR03799 424 LVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREA-GKSFVSRTRLTPAQYDHQPTVVFRVVL 502 (522)
T ss_pred EecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEecccccCCCCcEEEEEEe
Confidence 877655566777753110 0 1223333333 55443311 11122235799998
Q ss_pred ec---CHHHHHHHHHH
Q 013521 424 FG---HREYISEACRR 436 (441)
Q Consensus 424 ~~---~~~~~~~~l~~ 436 (441)
.+ +.++++..++.
T Consensus 503 ~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 503 ANPLTTHEILQDILDE 518 (522)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 54 67888887765
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-11 Score=109.98 Aligned_cols=158 Identities=18% Similarity=0.259 Sum_probs=113.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccccccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLKET 188 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~ 188 (441)
+-...|.+.||..- . |+ --+.++++++|+.. +..++++||.|+...--|.+-...+ +.+|
T Consensus 62 PT~~vlE~RiAaLE-G--G~---aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~G--------- 126 (426)
T COG2873 62 PTTDVLEERIAALE-G--GV---AALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLG--------- 126 (426)
T ss_pred chHHHHHHHHHHhh-c--ch---hhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcC---------
Confidence 34566777777652 1 11 22356667777776 8999999999999988887754444 4455
Q ss_pred CccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc
Q 013521 189 GKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI 268 (441)
Q Consensus 189 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~ 268 (441)
+++.+++.++-+.|... ..+++|+||+-+-.||-+.+.+ +++|+++|++||+++|+|..+.. |.-+
T Consensus 127 ---i~v~fvd~~d~~~~~~a--I~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~at------pyl~ 192 (426)
T COG2873 127 ---IEVRFVDPDDPENFEAA--IDENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFAT------PYLC 192 (426)
T ss_pred ---cEEEEeCCCCHHHHHHH--hCcccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCc------ceec
Confidence 58888876542232221 2479999999899999999999 99999999999999999998873 2111
Q ss_pred cccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 269 YEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
..++ .+-.|++.|+||.+|-.|.-+|=+++..
T Consensus 193 rP~~--hGADIVvHS~TK~igGhGt~iGG~iVD~ 224 (426)
T COG2873 193 RPIE--HGADIVVHSATKYIGGHGTAIGGVIVDG 224 (426)
T ss_pred chhh--cCCCEEEEeecccccCCccccceEEEeC
Confidence 1121 1224899999999998888888777644
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-10 Score=115.87 Aligned_cols=340 Identities=11% Similarity=0.085 Sum_probs=178.7
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHH--HHHHHHhhccC-CCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCc
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITS--AMAEHAFALST-VKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGA 144 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~--al~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~ 144 (441)
++.++|+..|- ..+ ..+|.+.+ ++.+.+.+... ......| ......++-+.+++.. .+-..+.+.+++++
T Consensus 44 G~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~-~~~~~~~la~~l~~~~---~p~~~~~v~f~~SG 119 (443)
T PRK08297 44 GRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDV-YTVEMARFVDTFARVL---GDPELPHLFFVDGG 119 (443)
T ss_pred CCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCc-CCHHHHHHHHHHHhhc---CCCCCCEEEEeCch
Confidence 45577775553 222 35688888 99888865321 0111122 2222333444444331 02234699999999
Q ss_pred HHHHHH-HHHh--c--------C---C-CCEEEEeCCCchhhHhHHHHhcc-cc----ccccccCccceeEEe--ecCCC
Q 013521 145 QSDISR-LQML--L--------G---S-NVTVAVQDPSFPAYIDTSVIVGQ-AG----KFLKETGKYRNIVYM--NCRPE 202 (441)
Q Consensus 145 ~~al~~-l~~l--~--------~---~-gd~Vlv~~p~y~~~~~~~~~~g~-~~----~~~~~~~~~~~v~~v--~~~~~ 202 (441)
++|+.. +... . . + ..+|+...-+|++....+..... .. .+............+ +...+
T Consensus 120 sEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (443)
T PRK08297 120 ALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGE 199 (443)
T ss_pred HHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCccc
Confidence 999986 4211 1 1 1 25799999999997554443321 10 000000000000000 00000
Q ss_pred C--Ccc-------CC----CCC-CCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC
Q 013521 203 N--NFF-------PD----LST-TSRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR 266 (441)
Q Consensus 203 ~--~~~-------~~----~~~-~~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~ 266 (441)
. ... .+ ++. ..++.++++ .| +.--|. ..|++.+++|.++|++||+++|.||++..|...+...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~-EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 278 (443)
T PRK08297 200 DLEEVEALEAEALAQARAAFERHPHDIACFIA-EPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAW 278 (443)
T ss_pred ccchhhHHHHHHHHHHHHHHHhCCCcEEEEEE-ccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHH
Confidence 0 000 00 011 245666554 66 444464 4789999999999999999999999998764443221
Q ss_pred cccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhH-HHHH-HHHhhhcCCCcHHHHHHHHHhcCCCcH
Q 013521 267 SIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVI-KDFN-RIVCTCFNGASNIVQAGGLACLSPDGF 344 (441)
Q Consensus 267 ~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~a~~~~l~~~~~ 344 (441)
....++-.|| ++ +|+|.++ .| |.+ +.+++.. .. ..+. ......+.+.++++..++.+.++.-..
T Consensus 279 a~~~~gv~PD--iv--~~gK~l~-~~---a~l-~~~~i~~-----~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~ 344 (443)
T PRK08297 279 AYQQLGVRPD--IV--AFGKKTQ-VC---GIM-AGRRVDE-----VEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEE 344 (443)
T ss_pred HHHhcCCCCC--EE--Eeccccc-cc---cee-cchHHHH-----hhhhhccCccccCCCCCccHHHHHHHHHHHHHHHh
Confidence 1112222345 33 4899874 22 343 3333210 00 0010 011223444678888888887762111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----CC-C--eeeCCCCceEEEEEcCCCC-hHHHHHHHHHhcCeEEeCCCCcCCCCC
Q 013521 345 QALRTVIDYYKENAKIIVDAFQS----LG-L--KVNGGKNAPYVWVQFPGSS-SWDVFAEILEKTHILTIPGSGFGPGGN 416 (441)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~L~~----~g-~--~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~v~pg~~f~~~~~ 416 (441)
+.+.+..++.-+.+.+.|++ ++ + .+. ..|.++.++++... ...+...++ ++||.+.|+. .
T Consensus 345 ---~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vr--g~G~~~~i~~~~~~~~~~~~~~l~-~~Gvl~~~~~------~ 412 (443)
T PRK08297 345 ---DGLVENAARQGEYLLARLEELAAEFPAVVSNVR--GRGLMCAFDLPTTADRDEVIRRLW-EEGVLVLPCG------E 412 (443)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHHHHCCCcceeee--ccceEEEEEecCHHHHHHHHHHHH-HCCEEEecCC------C
Confidence 22334444444455454443 32 2 222 24777788886322 235566666 4599998742 3
Q ss_pred CeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 417 EHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 417 ~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+.+|++ +..+++++++++++|.+++
T Consensus 413 ~~lr~~P~l~~t~~eid~~l~~l~~~l 439 (443)
T PRK08297 413 RSIRFRPALTVTTEEIDAAIDALRRAL 439 (443)
T ss_pred CeEEEECCccCCHHHHHHHHHHHHHHH
Confidence 568885 6679999999999998764
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-09 Score=105.71 Aligned_cols=315 Identities=11% Similarity=0.023 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC--cEEEcCCcHHHHHH-HHHh--cCCCCEEE
Q 013521 88 DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD--EIFISDGAQSDISR-LQML--LGSNVTVA 162 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~--~I~~t~G~~~al~~-l~~l--~~~gd~Vl 162 (441)
..+.+.+.-.+.+.++.-....| .-+..++.+.+-+|+.+.++.+++ .=++|+|+|++... +... ..+...|+
T Consensus 105 s~l~~~l~~~~nN~Gdp~~~s~~--~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy 182 (470)
T PLN02263 105 GALGQLQHFSINNLGDPFIESNY--GVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILY 182 (470)
T ss_pred hhHHHHHHhhccCCCCccccCCc--chhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEE
Confidence 44555555555544331111222 226788999999999887787654 35788999988654 4222 22344788
Q ss_pred EeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC-----CCCccEEEEcCCCCccccCCCHHHH
Q 013521 163 VQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST-----TSRTDIIFFCSPNNPTGHAATWQQL 236 (441)
Q Consensus 163 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~ 236 (441)
+++-+|.++..+++.+| ++++.||++.++..+.+ +++ ..++-+|+.+-...+||.+=| +
T Consensus 183 ~S~~aH~Sv~KAa~llg------------i~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp---i 247 (470)
T PLN02263 183 ASRESHYSVFKAARMYR------------MECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDD---L 247 (470)
T ss_pred EcCCccHHHHHHHHhcC------------CcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC---H
Confidence 89999999999999999 58888998765433332 111 123445555677889999977 8
Q ss_pred HHHHHHHHHcCc-----EEEEcccccccccCC-CCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCc
Q 013521 237 KKLVEFAKANGS-----IIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY 310 (441)
Q Consensus 237 ~~i~~~a~~~~~-----~ii~De~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~ 310 (441)
++|.++|+++|+ ++.+|.+|+.+...- ...+...+ .....-+.-+.+|.++ ....+|.++.+++.+..-.
T Consensus 248 ~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df--~~~vDSIsvD~HK~l~-~P~~cgvll~R~~~~~~~~- 323 (470)
T PLN02263 248 DLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTF--KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLS- 323 (470)
T ss_pred HHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCC--CcCccEEEECCccccC-CCcCEEEEEEehhhHhhhc-
Confidence 888888999996 999999998754311 01111122 1123345667899997 8889999998876531100
Q ss_pred hhHHHHHHHHhhhcCCCcHHH--HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCC
Q 013521 311 PVIKDFNRIVCTCFNGASNIV--QAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS 388 (441)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~--~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 388 (441)
...+.+.. ...... .+... ...+-..|...+.+.++++.+..-+..+++.+.|++.|+.....+..+.+.+..+.
T Consensus 324 ~~~~Yl~~-~d~ti~-gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~~V~f~~p~- 400 (470)
T PLN02263 324 SNVEYLAS-RDATIM-GSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVFERPK- 400 (470)
T ss_pred cChHhhCC-CCCCcC-CCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCceEEEEecCc-
Confidence 00011110 001111 12211 12223334445566778888888889999999999988877655667667776542
Q ss_pred ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 389 SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 389 ~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
.+. .. +|-.+.+ .++.+++++.. +.+.++++++.|++.
T Consensus 401 --~~~----~~-~gW~L~~-------~~~~~Hivvmphv~~~~id~fi~DL~~~ 440 (470)
T PLN02263 401 --DEE----FV-RRWQLAC-------QGNIAHVVVMPSVTIEKLDYFLKELVEK 440 (470)
T ss_pred --hHH----hh-cceEEcc-------CCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 111 12 3555544 12458888733 678899999888763
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-11 Score=123.69 Aligned_cols=306 Identities=14% Similarity=0.131 Sum_probs=182.2
Q ss_pred CCCCC---CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHh----cC---C-CCEEEEeCCCchhhHhHHH
Q 013521 108 KGYGA---EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQML----LG---S-NVTVAVQDPSFPAYIDTSV 176 (441)
Q Consensus 108 ~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l----~~---~-gd~Vlv~~p~y~~~~~~~~ 176 (441)
+-|.| .+|..++...+.+++.+..|.+.-.+...+|++.-+..++.+ .. + .++|+++.-.|......+.
T Consensus 530 hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~ 609 (954)
T PRK12566 530 HPFAPREQAEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQ 609 (954)
T ss_pred CCCCchhhhcCHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHH
Confidence 45777 789999999999888876666555555556665443433322 22 2 3578888877754444466
Q ss_pred HhccccccccccCccceeEEeecCCCCCccCC-CCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEE
Q 013521 177 IVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSII 250 (441)
Q Consensus 177 ~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~i 250 (441)
..| .+++.++.++++..+.+ ++. .+++.+|++++|++-.+. ++.+++|+++|+++|+++
T Consensus 610 ~~G------------ieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~Galv 674 (954)
T PRK12566 610 MAG------------MRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVY---EEGIREICEVVHQHGGQV 674 (954)
T ss_pred HCC------------CEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCcee---cchHHHHHHHHHHcCCEE
Confidence 666 59999999865543322 111 256777777788764433 455999999999999999
Q ss_pred EEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC----ccceeEEEEeecc---ccccC-CchhHHHHHHHHhh
Q 013521 251 VYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF----TGVRLGWTVVPEE---LRYSN-GYPVIKDFNRIVCT 322 (441)
Q Consensus 251 i~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~----~G~r~G~l~~~~~---~~~~~-~~~~~~~~~~~~~~ 322 (441)
++|.++.. .... ......+ +.+|+.++++|+|+. .|.-+|.+.+.+. ++... .........+....
T Consensus 675 ~vDgA~~~-a~~~-l~~Pg~~----GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~ 748 (954)
T PRK12566 675 YMDGANLN-AQVG-LARPADI----GADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAV 748 (954)
T ss_pred EEEeeChh-hccC-CCChhhc----CCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCce
Confidence 99999862 1111 1111122 345999999998852 3555777666653 32110 00000000000111
Q ss_pred -hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCce-E--EEEE---cC---CCChH
Q 013521 323 -CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAP-Y--VWVQ---FP---GSSSW 391 (441)
Q Consensus 323 -~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~--~~~~---~~---~~~~~ 391 (441)
.....+.....++...+...|.+ +.+.......+.+++.+.|.+. ++.+.+ .++. | ..++ ++ +.+..
T Consensus 749 S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~-~~~~~~hEfii~~~~l~~~~g~~~~ 826 (954)
T PRK12566 749 SAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGAFPVLYRG-RNERVAHECILDLRPLKAQTGISEE 826 (954)
T ss_pred eecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhhCCCCcCC-CCCCeeeEEEEEccccccccCCCHH
Confidence 01111222233345555545555 6666666677889999999764 555432 2233 1 2223 32 24557
Q ss_pred HHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 392 DVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 392 ~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
++.++|+ ++||....- .| + ..+++|++. ..++++++++++.|..+
T Consensus 827 dvakRL~-d~Gihapt~-~f-P-v~~~LmIepTE~eskeEIDrf~eAL~~I 873 (954)
T PRK12566 827 DVAKRLM-DYGFHAPTM-SF-P-VPGTLMVEPTESESKAELDRFVEAMLSI 873 (954)
T ss_pred HHHHHHH-HCCcEEeEE-ee-c-cCCEEEEEeeeeCCHHHHHHHHHHHHHH
Confidence 7888888 569876542 33 3 377899995 56899999999998764
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-10 Score=114.55 Aligned_cols=151 Identities=12% Similarity=0.094 Sum_probs=100.4
Q ss_pred CCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC-CCc---
Q 013521 131 MGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE-NNF--- 205 (441)
Q Consensus 131 ~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~-~~~--- 205 (441)
+|.+ .-.+++||+|.++.+ +++++.+||.|+++..+|-+..+.+.+.| +.+++++...+ .++
T Consensus 208 fgAd-~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsg------------a~PVYl~P~~n~~Gi~g~ 274 (713)
T PRK15399 208 FGAE-QSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSD------------VVPIWLKPTRNALGILGG 274 (713)
T ss_pred hCCC-cEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcC------------CeeEEecccccccCCcCC
Confidence 3543 578899999999887 78899999999999999999999998888 46666654321 111
Q ss_pred -cC-----C-----CCCC---CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEE-EEcccccccc-cCCC--CCc
Q 013521 206 -FP-----D-----LSTT---SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSII-VYDSAYAAYI-TDPS--PRS 267 (441)
Q Consensus 206 -~~-----~-----~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~i-i~De~~~~~~-~~~~--~~~ 267 (441)
.+ + +.+. .++++++|++|++ -|.+++ +++|++.| |+.+ ++||+|+.+. |.+. +.+
T Consensus 275 I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~s 347 (713)
T PRK15399 275 IPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKS 347 (713)
T ss_pred CChhhccHHHHHHHHHhCCCcCCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEEeccchhhhhcCcccCCcC
Confidence 11 0 1112 3446889988855 899999 55666666 4555 6999998643 3331 122
Q ss_pred cccc-CCCcceeEEEecCCcccCCccce-eEEEEeecc
Q 013521 268 IYEI-PGAREVAIEISSFSKFAGFTGVR-LGWTVVPEE 303 (441)
Q Consensus 268 ~~~~-~~~~~~~i~i~S~SK~~~~~G~r-~G~l~~~~~ 303 (441)
.... .+.+..++.+.|.+|.++ ++. .+++.+...
T Consensus 348 am~~~~~aD~~i~~tQStHKtL~--alTQaS~iHvk~~ 383 (713)
T PRK15399 348 GMSGERVPGKVIFETQSTHKMLA--AFSQASLIHIKGE 383 (713)
T ss_pred hhhCCCCCCeeeeeeeehhcccc--ccchheeeeecCC
Confidence 2222 123344577999999984 554 456666543
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.8e-10 Score=97.36 Aligned_cols=276 Identities=19% Similarity=0.203 Sum_probs=176.3
Q ss_pred cHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCcccee
Q 013521 116 NMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNI 194 (441)
Q Consensus 116 ~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v 194 (441)
...+.+.+++|+ | .|.+-+|+|+.++=++ ..+++++||.|++...+|....-++...| +++
T Consensus 63 I~~F~~dlaeFl----g--~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAErag------------l~v 124 (382)
T COG1103 63 IKDFLEDLAEFL----G--MDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAG------------LNV 124 (382)
T ss_pred HHHHHHHHHHHh----C--CceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhcC------------CeE
Confidence 456677789987 4 4677799999999887 56788999999999998877666777777 588
Q ss_pred EEeecCCCCCccCCCC----------C--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC
Q 013521 195 VYMNCRPENNFFPDLS----------T--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD 262 (441)
Q Consensus 195 ~~v~~~~~~~~~~~~~----------~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~ 262 (441)
..+|-...-.+..+.+ + ...+.+.++++|..--|.+-+ -++++++|+++|+.++...+|..-
T Consensus 125 ~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~G--- 198 (382)
T COG1103 125 AEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTVG--- 198 (382)
T ss_pred EecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHcCCceEeecceeec---
Confidence 8888432222222221 1 145788888888666776655 889999999999999999999742
Q ss_pred CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHH-h-h---------h-cCCCcHH
Q 013521 263 PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIV-C-T---------C-FNGASNI 330 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~-~-~---------~-~~~~~~~ 330 (441)
.-|.+..+.. ..++++|-+|.++ +.-.+|.+..+.++- +...+.. . . + ..+.+.+
T Consensus 199 rmpvs~ke~g----~DFiVgSGHKsmA-As~PiGvl~~~eE~a--------e~V~r~Sg~~~~~KEvellGCT~rGapiv 265 (382)
T COG1103 199 RMPVSGKEIG----ADFIVGSGHKSMA-ASAPIGVLAMSEEWA--------EIVLRRSGRAFPKKEVELLGCTVRGAPIV 265 (382)
T ss_pred cccccccccC----CCEEEecCccchh-ccCCeeEEeehhHHH--------HHHHhhcccccccceeeeecccccCchHH
Confidence 2255655552 2499999999997 666899999988872 2221111 0 0 0 1112222
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC--CCCceEEEEEcCCCChH--------H-HHHHHH
Q 013521 331 VQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNG--GKNAPYVWVQFPGSSSW--------D-VFAEIL 398 (441)
Q Consensus 331 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~~~~~~--------~-~~~~ll 398 (441)
+. .+.+- .-...-++.+.--++.+.+.+.|+++ |+...+ |..--.+.+..|..... = ++.. |
T Consensus 266 Tl---mASfP--~V~eRVkrWdeEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~E-L 339 (382)
T COG1103 266 TL---MASFP--HVVERVKRWDEEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEE-L 339 (382)
T ss_pred HH---HhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHH-H
Confidence 22 12221 11111222333345677888889888 465432 33333455555532111 1 3344 4
Q ss_pred HhcCeE-EeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 399 EKTHIL-TIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 399 ~~~gi~-v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
+++||. +.|| ...++.+|++. +.++++..++.++++
T Consensus 340 K~RgI~GI~~G------~Tk~~K~svyGl~~Eqve~V~~afkeI 377 (382)
T COG1103 340 KKRGIHGIQPG------QTKYFKLSVYGLSWEQVEYVVDAFKEI 377 (382)
T ss_pred HhcCccccccC------ceeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 444664 4444 36789999755 889999999988876
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-10 Score=106.60 Aligned_cols=326 Identities=16% Similarity=0.119 Sum_probs=193.6
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H-HH-hcCCCCEE
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L-QM-LLGSNVTV 161 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l-~~-l~~~gd~V 161 (441)
...|.+.+++.+.+..+. .....|..+ -..++.+++++.+ .-+-.-++++|++++|.++ + +. +....-.|
T Consensus 66 HchP~v~~a~~kQl~~l~--H~t~~~~~~-pi~~~Ae~L~s~~----P~~l~~vfF~nsGsEANelal~mar~Yt~~~di 138 (442)
T KOG1404|consen 66 HCHPDVVAAAVKQLKKLY--HTTSGYLNP-PIHDLAEALVSKL----PGDLKVVFFVNSGSEANELALKMARLYTGNLDI 138 (442)
T ss_pred CCChHHHHHHHHhhhhhE--EeeccccCC-cHHHHHHHHHHhC----CCCceEEEEecCCchHHHHHHHHHHHhcCCceE
Confidence 367889999999887665 344456433 4567777777765 4455679999999999886 3 22 22333467
Q ss_pred EEeCCCchhhHhHHHHhccccc--cccccCccceeEEeecCCCCCcc-------------CCCCC-----CCCccEEEEc
Q 013521 162 AVQDPSFPAYIDTSVIVGQAGK--FLKETGKYRNIVYMNCRPENNFF-------------PDLST-----TSRTDIIFFC 221 (441)
Q Consensus 162 lv~~p~y~~~~~~~~~~g~~~~--~~~~~~~~~~v~~v~~~~~~~~~-------------~~~~~-----~~~~~~v~i~ 221 (441)
+.-..+|++.......+...+- +............+..++..+.. .++++ .+++-+-++.
T Consensus 139 Ia~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafia 218 (442)
T KOG1404|consen 139 IARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIA 218 (442)
T ss_pred EEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEe
Confidence 7778889886444333221110 00000000000111111110000 01111 2333444666
Q ss_pred CC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 222 SP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
.+ +---|++ +++..+++..++|+++|.+.|.||+...|...+......+-+-.|| |-|++|.+| .|+.+|.++
T Consensus 219 EtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PD----IvTmAKgiG-nG~Pl~AVv 293 (442)
T KOG1404|consen 219 ETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPD----IVTMAKGIG-NGFPLGAVV 293 (442)
T ss_pred ehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCcc----HHHHHhhcc-CCCcceeee
Confidence 55 6555655 7889999999999999999999999998776553222222222344 668999999 999999999
Q ss_pred eeccccccCCchhHHHHHHHH-hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeeCCC
Q 013521 300 VPEELRYSNGYPVIKDFNRIV-CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVNGGK 376 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~ 376 (441)
+.+++ .+-+.+.. ...+.+.++++..++.+.|+--. -+++.+..++--.+|.+.|.++ +.+..+.-
T Consensus 294 tt~EI--------a~v~~~~~~~fnTyggnP~a~avg~aVL~Vik---ee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdV 362 (442)
T KOG1404|consen 294 TTPEI--------ADVLNQKSSHFNTYGGNPVACAVGLAVLKVIK---EENLQENAAEVGSYLLEKLAALKDKHPIIGDV 362 (442)
T ss_pred cCHHH--------HHHHHhccccccccCCCchhHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHhhcCCceeec
Confidence 99887 34444333 33445577888888888876211 1444555555566777777665 33332222
Q ss_pred --CceEEEEEcCCCC---------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHH
Q 013521 377 --NAPYVWVQFPGSS---------SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRL 437 (441)
Q Consensus 377 --~~~~~~~~~~~~~---------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l 437 (441)
.|.++=+++-+.. ...++..-+++.|+.|--|..++ +.+||+ ++-++++++-+++..
T Consensus 363 RG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G----~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 363 RGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHG----NVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred ccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccc----eEEEecCCeeccHHHHHHHHHHH
Confidence 3555555542111 12234444566799996666544 389999 677889987776643
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-10 Score=102.17 Aligned_cols=332 Identities=14% Similarity=0.169 Sum_probs=195.9
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC-CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG-AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
.++|.|+-+.....++....+..+.+..+... ...-++. ....-.++-+.+.+.+...+|..+.+++++.+++-.++-
T Consensus 30 ~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~-~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k 108 (407)
T COG3844 30 GGVIYLDGNSLGARPRAVTARLQQVATDEWGE-GLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFK 108 (407)
T ss_pred CCeEEeeccccccCchHHHHHHHHHHHHHHHh-hhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHH
Confidence 47899987776544434444444444433321 1111111 122334555566666666679999999999999999886
Q ss_pred -HHHhc--CCCCEEEEeCC-Cchhh----HhHHHHhccccccccccCccceeEEeecCCCCCccC-CCCC--CCCccEEE
Q 013521 151 -LQMLL--GSNVTVAVQDP-SFPAY----IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFP-DLST--TSRTDIIF 219 (441)
Q Consensus 151 -l~~l~--~~gd~Vlv~~p-~y~~~----~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~--~~~~~~v~ 219 (441)
|.+.+ .+|+.|++++- +|+.= ...+...+.. .++..+ ..+ ++++ ..++.+|+
T Consensus 109 ~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~----------~~~~~~-------~~P~~~~~~~~dd~AvV~ 171 (407)
T COG3844 109 VLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG----------YDLEGV-------IAPRALEEAITDDVAVVL 171 (407)
T ss_pred HHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc----------ccceee-------eChHHHHHhhccceEEEE
Confidence 55555 45788887654 55442 2333333310 011111 111 1111 36788899
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC-ccceeEEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF-TGVRLGWT 298 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~-~G~r~G~l 298 (441)
+++.+.-||+.++ +.+|.++|++||++++-|=+|+--.. |..+-. .+..+-|++-.|.++. ||- .+++
T Consensus 172 L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGav---p~~Lh~----~gaDfaigcsyKYLNgGPGa-pa~l 240 (407)
T COG3844 172 LSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAV---PVDLHA----AGADFAIGCSYKYLNGGPGA-PAGL 240 (407)
T ss_pred eccccccccceee---HHHHHHHHHhcCceEEeehhcccCCc---ceeecc----cCCCeeeeeeceeccCCCCC-ceeE
Confidence 9899999999999 99999999999999999999884222 333322 2345889999998763 332 4566
Q ss_pred EeeccccccCCchhH------HHHH---HH------HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 013521 299 VVPEELRYSNGYPVI------KDFN---RI------VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVD 363 (441)
Q Consensus 299 ~~~~~~~~~~~~~~~------~~~~---~~------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 363 (441)
.+.++..+.-.+.+. +++. .+ ..+...+.+..+..+....|+-...-.+.++|++--...+++++
T Consensus 241 ~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fie 320 (407)
T COG3844 241 FVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIE 320 (407)
T ss_pred EeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHH
Confidence 655554321100000 0010 00 01111123333333333333311112367778887788889999
Q ss_pred HHHhC----CCeeeCCC----CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe---ecCHHHHHH
Q 013521 364 AFQSL----GLKVNGGK----NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA---FGHREYISE 432 (441)
Q Consensus 364 ~L~~~----g~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~---~~~~~~~~~ 432 (441)
.++.+ ++++..|. .|..+.+..+ ...+++++|.+ +||..- | ..++-+|+++ +.+-.++-.
T Consensus 321 LvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp--~~~~V~qaLi~-rGVigD----~--R~P~vlRfgftPlY~~~~DVw~ 391 (407)
T COG3844 321 LVEARCEYYGLTLVTPRAHEERGSQVSLYHP--HGYQVMQALID-RGVIGD----F--REPDVLRFGFTPLYVSFVDVWD 391 (407)
T ss_pred HHHhccccCCcEEeccchhhhccceeeEecC--cHHHHHHHHHH-cCcccc----c--cCCCeeeecCccceechhHHHH
Confidence 88865 56665443 3667888877 45667677665 598741 2 2367899996 567888888
Q ss_pred HHHHHHhhC
Q 013521 433 ACRRLKNFL 441 (441)
Q Consensus 433 ~l~~l~~~l 441 (441)
+++.|.+++
T Consensus 392 AV~~L~evL 400 (407)
T COG3844 392 AVDALEEVL 400 (407)
T ss_pred HHHHHHHHH
Confidence 888888764
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.2e-11 Score=108.53 Aligned_cols=337 Identities=13% Similarity=0.148 Sum_probs=213.6
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCC--CCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTV--KGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+++++||.+... .+...+.+.+.....++.++.. ..-.-|+...-...+.+.||+++ |+ ++.|+...|-+..
T Consensus 93 G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~----G~-E~aivYs~gF~ti 167 (467)
T KOG1358|consen 93 GKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFM----GT-EDAIVYSYGFSTI 167 (467)
T ss_pred CceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhh----CC-cceeeeccccchh
Confidence 457788887763 4567788999999999987521 11223777667788999999996 64 5788888888877
Q ss_pred HHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCcc---CCCC--C--CC---C-cc
Q 013521 148 ISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFF---PDLS--T--TS---R-TD 216 (441)
Q Consensus 148 l~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~---~~~~--~--~~---~-~~ 216 (441)
-+.+-++.+.||.|.+.+-....+....+... -.++++..++..++. ++.+ + .+ . .+
T Consensus 168 ~S~ipafsKrGDIi~~de~~nfaIq~GlqlSR------------S~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rr 235 (467)
T KOG1358|consen 168 ESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSR------------STISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRR 235 (467)
T ss_pred hhcchhhhccCcEEEEehhhhHHHHHHHhhhh------------heeEEecCCCHHHHHHhccCcchhhhhccccccceE
Confidence 67899999999999998888877766666555 256666655433321 1111 1 11 2 23
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC--CcceeEEEecCCcccCCccce
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG--AREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~--~~~~~i~i~S~SK~~~~~G~r 294 (441)
.|++-----+||.+.| +.+|+++..+|...||.||.|+.-..+.....+..-.+ ..+..++++|+.-+++..|
T Consensus 236 fiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G-- 310 (467)
T KOG1358|consen 236 FIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG-- 310 (467)
T ss_pred EEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC--
Confidence 3444344455999999 88999999999999999999985444432233322111 2456689999998887666
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKV 372 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 372 (441)
||.++..-.+.. +++.. ...++. +.++....++..++.-. ++-..+.+.++.....+...|... ++.+
T Consensus 311 -gFc~G~~~i~~h------QrLSg-~~Y~fSAslPp~la~aa~~ai~i~--~~~p~~~~~L~~k~~~~H~~l~~~s~~~v 380 (467)
T KOG1358|consen 311 -GFCAGKSFIADH------QRLSG-SGYCFSASLPPYLAGAAIKAILIE--EWNPEIVQPLRAKVAKFHAALSSNSGFIV 380 (467)
T ss_pred -ceeecceeeEee------eeccc-cceeeeccCchhhhhhHHHHHHHH--hhCcchhhhhhccccccchhhhcCCceEE
Confidence 777764433211 11211 011111 13333333334343311 111335566666777777888765 6788
Q ss_pred eCCCCceEEEEEcCC-----CCh----HHHHHHHHHhcCeEEeCCCCcC----CCCCCeEEEEeec--CHHHHHHHHHHH
Q 013521 373 NGGKNAPYVWVQFPG-----SSS----WDVFAEILEKTHILTIPGSGFG----PGGNEHIRVSAFG--HREYISEACRRL 437 (441)
Q Consensus 373 ~~~~~~~~~~~~~~~-----~~~----~~~~~~ll~~~gi~v~pg~~f~----~~~~~~iRls~~~--~~~~~~~~l~~l 437 (441)
....-++.+.+.+.. ..+ ++++...+.+ |+.+.....-. ..-+..+||++.. ++++++++.+.|
T Consensus 381 ~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~i 459 (467)
T KOG1358|consen 381 SGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELI 459 (467)
T ss_pred ecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHH
Confidence 777778888888863 111 2344455555 77776554321 1235679999843 899999999998
Q ss_pred Hhh
Q 013521 438 KNF 440 (441)
Q Consensus 438 ~~~ 440 (441)
++.
T Consensus 460 k~~ 462 (467)
T KOG1358|consen 460 KEV 462 (467)
T ss_pred HHH
Confidence 863
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-09 Score=107.27 Aligned_cols=338 Identities=11% Similarity=0.071 Sum_probs=172.8
Q ss_pred CCeEEeCCCC--CCC-CCcHHHH--HHHHHHHhhccC-CCCCCCCCCCcCcHHHHHHHHHHHhhhC-CCCCCcEEEcCCc
Q 013521 72 ARLIRLGIGD--TTQ-PIPDIIT--SAMAEHAFALST-VKGYKGYGAEQGNMALRTAIADKFYKDM-GIEGDEIFISDGA 144 (441)
Q Consensus 72 ~~~i~l~~g~--~~~-~~~~~~~--~al~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~~l~~~~-~~~~~~I~~t~G~ 144 (441)
+.++|+..|- ..+ ..+|.+. +++.+.+.+... ......+ . .+....+++.+.+.. .-..+.+++++++
T Consensus 38 ~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~----~-~~~~~~l~~~l~~~~~~~~~~~v~f~~sG 112 (431)
T TIGR03251 38 RRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDV----Y-TVAMARFVDTFARVLGDPALPHLFFIEGG 112 (431)
T ss_pred CChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCC----C-CHHHHHHHHHHHHhcCCCCcCEEEEeCCc
Confidence 4456654442 112 2567787 888888765320 0111112 1 122233333333211 1134689999999
Q ss_pred HHHHHH-HH--HhcC------------CCCEEEEeCCCchhhHhHHHHh-ccccccccccCccceeEEe-------ecCC
Q 013521 145 QSDISR-LQ--MLLG------------SNVTVAVQDPSFPAYIDTSVIV-GQAGKFLKETGKYRNIVYM-------NCRP 201 (441)
Q Consensus 145 ~~al~~-l~--~l~~------------~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~v~~v-------~~~~ 201 (441)
++|+.. +. .... .+.+|+...-+|++....+... |......... .......+ +.+.
T Consensus 113 sEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~ 191 (431)
T TIGR03251 113 ALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARF-PKFDWPRIDNPKLTFPLDA 191 (431)
T ss_pred HHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCC-CCCCCccCCCCcccCCccc
Confidence 999886 42 1111 1367999999999975444333 2111100000 00000000 1100
Q ss_pred CC-C-c----cCCC-------CC-CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC
Q 013521 202 EN-N-F----FPDL-------ST-TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP 265 (441)
Q Consensus 202 ~~-~-~----~~~~-------~~-~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~ 265 (441)
.. . . ..++ +. ..++.++++ .| +.-.|.+ .|++.+++|.++|++||+++|.||++..|...+..
T Consensus 192 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iAaviv-EPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~ 270 (431)
T TIGR03251 192 PNLDQVIALEEEALRQARAAFAERPHDIACFIA-EPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTA 270 (431)
T ss_pred cccchhhHHHHHHHHHHHHHHHhCCCcEEEEEE-eccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchH
Confidence 00 0 0 0001 01 245666665 55 5556765 68899999999999999999999999976544322
Q ss_pred CcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHH-HHH-HHHhhhcCCCcHHHHHHHHHhcCCCc
Q 013521 266 RSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIK-DFN-RIVCTCFNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 266 ~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~a~~~~l~~~~ 343 (441)
.....++-.+| ++ +++|.+. . .|++... ++.. ... .+. ......+.+.+++...++.+.++.-.
T Consensus 271 ~a~~~~gv~PD--i~--~~gK~~~-~---~g~~~~~-~i~~-----~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~ 336 (431)
T TIGR03251 271 WAYQQLGVQPD--IV--AFGKKTQ-V---CGIMAGR-RVDE-----VADNVFAVPSRLNSTWGGNLVDMVRATRILEIIE 336 (431)
T ss_pred HHHHhcCCCCC--EE--EecccCc-c---ceEEecc-hHHH-----hhhhcccCccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 11112222345 33 4788862 2 3565443 2200 000 000 00112334467777777777776211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----CC-CeeeCCCCceEEEEEcCCCCh-HHHHHHHHHhcCeEEeCCCCcCCCCCC
Q 013521 344 FQALRTVIDYYKENAKIIVDAFQS----LG-LKVNGGKNAPYVWVQFPGSSS-WDVFAEILEKTHILTIPGSGFGPGGNE 417 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~gi~v~pg~~f~~~~~~ 417 (441)
. +...+..+++-+.+.+.|++ +. +.......|.++.++++.... ..+...++ ++||.+.|.. .+
T Consensus 337 ~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~-~~Gvl~~~~g------~~ 406 (431)
T TIGR03251 337 E---ERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPSTADRDEVIRQLY-REGVLLLGCG------ER 406 (431)
T ss_pred h---cCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCHHHHHHHHHHHH-hCCeEEecCC------CC
Confidence 1 11223333344444444433 32 322122246777777763222 34556655 5599997742 35
Q ss_pred eEEEE--eecCHHHHHHHHHHHHhh
Q 013521 418 HIRVS--AFGHREYISEACRRLKNF 440 (441)
Q Consensus 418 ~iRls--~~~~~~~~~~~l~~l~~~ 440 (441)
.+|++ +..+++++++++++|.++
T Consensus 407 ~lr~~P~l~~t~~eid~~l~~l~~~ 431 (431)
T TIGR03251 407 SIRFRPPLTVTREEIDAAIDAIRRV 431 (431)
T ss_pred eEEEECCccCCHHHHHHHHHHHHhC
Confidence 68887 467999999999999763
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.9e-10 Score=106.68 Aligned_cols=328 Identities=13% Similarity=0.069 Sum_probs=184.6
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC-CCCCcEEEcCCcHHHHHH-HH-H--hc----C
Q 013521 86 IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG-IEGDEIFISDGAQSDISR-LQ-M--LL----G 156 (441)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~-~~~~~I~~t~G~~~al~~-l~-~--l~----~ 156 (441)
-.+.+.+|+.+.+.++.- .........+ ..+|-+.|++.. + -+-+.|++++|+++++++ +. . .. +
T Consensus 61 ~~~~i~~Ai~~Q~~~l~~-~~~~~~t~~P-a~~LA~~L~~~a----P~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~ 134 (449)
T COG0161 61 GRPEIAEAIKKQLDKLPH-VMFGGFTHEP-AIELAEKLAELA----PEGGLDHVFFTDSGSEAVETALKMALQYWRARGQ 134 (449)
T ss_pred CCHHHHHHHHHHHHhCCc-hhhcccCCch-HHHHHHHHHHhC----CCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCC
Confidence 358899999998887541 1111121222 455555555553 3 236799999999999986 42 1 11 2
Q ss_pred CC-CEEEEeCCCchhhHhHHHHhcc-cccc-ccccCccceeEEeecCC------CCCccCC-------CCC-----CCCc
Q 013521 157 SN-VTVAVQDPSFPAYIDTSVIVGQ-AGKF-LKETGKYRNIVYMNCRP------ENNFFPD-------LST-----TSRT 215 (441)
Q Consensus 157 ~g-d~Vlv~~p~y~~~~~~~~~~g~-~~~~-~~~~~~~~~v~~v~~~~------~~~~~~~-------~~~-----~~~~ 215 (441)
|. .+++.-..+|++-.-.....|. .... .....-...+..++... .+...++ +++ .+..
T Consensus 135 p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~ 214 (449)
T COG0161 135 PQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPET 214 (449)
T ss_pred CcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCccc
Confidence 32 3488899999886433333332 1110 00000001222333221 0111111 111 2234
Q ss_pred cEEEEcCC--CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 216 DIIFFCSP--NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 216 ~~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
-+-+|..| +--+|+. +|+..++++.++|++||+++|.||+-..|...+......+..-.|| +-+++|.++..=
T Consensus 215 IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PD----i~~~aKGLT~GY 290 (449)
T COG0161 215 IAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPD----ILCLAKGLTGGY 290 (449)
T ss_pred EEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCC----eeeecccccccc
Confidence 44466677 4447766 5778999999999999999999999887776654332333332455 335789886444
Q ss_pred ceeEEEEeeccccccCCchhHHHHHHH-----HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFNRI-----VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 367 (441)
+.+|.+++.+++ .+.+..- ....+.+.++++..++++.|+--. -+.+.++.++.-.++.+.|.+
T Consensus 291 ~Pl~a~l~~~~I--------~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e---~e~l~~~~~~~~~~l~~~L~~ 359 (449)
T COG0161 291 LPLSAVLTSDRI--------YEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILE---EEDLLERVAEIGAYLQAGLQA 359 (449)
T ss_pred hhhHhHhhhHHH--------HHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHH
Confidence 556666666655 3333321 222344577888887777776211 134445555666666666665
Q ss_pred -C-CCeee--CCCCceEEEEEcCC-CC--------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHH
Q 013521 368 -L-GLKVN--GGKNAPYVWVQFPG-SS--------SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISE 432 (441)
Q Consensus 368 -~-g~~~~--~~~~~~~~~~~~~~-~~--------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~ 432 (441)
+ +-... .-.-|...-+++.. .. -...+...+.++|+.++|.. ..+=++ +..+++++++
T Consensus 360 ~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g-------~~i~~~PPliit~~eid~ 432 (449)
T COG0161 360 ALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLG-------DVIYLMPPLIITREEIDE 432 (449)
T ss_pred hcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeecC-------CEEEEcCCccCCHHHHHH
Confidence 2 11111 11246666677742 11 12344444555699999952 134344 4558999999
Q ss_pred HHHHHHhhC
Q 013521 433 ACRRLKNFL 441 (441)
Q Consensus 433 ~l~~l~~~l 441 (441)
+++++.+++
T Consensus 433 l~~~l~~al 441 (449)
T COG0161 433 LVDALREAL 441 (449)
T ss_pred HHHHHHHHH
Confidence 999998764
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-09 Score=107.73 Aligned_cols=278 Identities=13% Similarity=0.159 Sum_probs=177.6
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcHHHHHH-HHH---hcC--C
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQSDISR-LQM---LLG--S 157 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~~al~~-l~~---l~~--~ 157 (441)
.+++...+++...+.. ........++..++.+.+..|+.+.++.+ .-.=.+|+|+|+++.+ +.. ... .
T Consensus 73 ~~~~~a~~~~~~~~~~-----nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~ 147 (460)
T COG0076 73 RVPPVAAELLVSALNK-----NLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRA 147 (460)
T ss_pred CCHHHHHHHHHHHHhh-----cCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHh
Confidence 3556677777777653 22222223488899999999998877764 3456799999998764 321 111 1
Q ss_pred ---C------CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCcc--EEEEc
Q 013521 158 ---N------VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTD--IIFFC 221 (441)
Q Consensus 158 ---g------d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~--~v~i~ 221 (441)
+ -.|+++.-.|.++...+..+| .++..++++.. +...|..+ ...+. +|+-+
T Consensus 148 ~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG------------~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~ 214 (460)
T COG0076 148 LAESGKPGGKPNIVCSETAHFSFEKAARYLG------------LGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGT 214 (460)
T ss_pred hhcccccCCCCeEEecCcchhHHHHHHHHhC------------CCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEE
Confidence 1 169999999999999999999 57777777763 33333221 12222 36667
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC-CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~-~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
-.+.+||.+=+ +++|.++|+++++++.+|.+|+.+... ..+...+. .+.+...-+.-+++|.. .+...+||++.
T Consensus 215 aGtT~~G~iDd---i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~-f~l~~vdSIt~d~HK~g-~aP~~~G~il~ 289 (460)
T COG0076 215 AGTTDTGSIDD---IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWD-FGLEGVDSITVDGHKYG-LAPIGCGVVLF 289 (460)
T ss_pred ecCCCCCccCC---HHHHHHHHHHcCCcEEEEccccceeecccCccchhh-cCCCCceEEEECccccc-CCCCCceEEEE
Confidence 88999998866 999999999999999999999976542 11111111 12233345677899998 48889999999
Q ss_pred eccc-cccCCchhHHHHHH---HHhhhcCCCcHH--HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-Ceee
Q 013521 301 PEEL-RYSNGYPVIKDFNR---IVCTCFNGASNI--VQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-LKVN 373 (441)
Q Consensus 301 ~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~ 373 (441)
+++. +.+ .......+.. ....... .+.. ...+..+.+...+.+.++++.++..+.++++.+.|++.+ +++.
T Consensus 290 rd~e~l~~-~~~~~~~yl~~~~~~~~ti~-~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~ 367 (460)
T COG0076 290 RDEEALRR-ILIFADYYLPGGGIPNFTIL-GSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELV 367 (460)
T ss_pred ECHHHhhh-hhhcccccCCCCCcCceeEe-eccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEee
Confidence 8873 211 0000000000 0000011 1111 122223333334455668888888899999999999985 8887
Q ss_pred CCCCceEEEEEcCC
Q 013521 374 GGKNAPYVWVQFPG 387 (441)
Q Consensus 374 ~~~~~~~~~~~~~~ 387 (441)
.++..+.+.++++.
T Consensus 368 ~~p~l~~V~fr~~~ 381 (460)
T COG0076 368 NEPELPIVAFRLKD 381 (460)
T ss_pred cCCccceEEEEcCC
Confidence 76788889999863
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-10 Score=114.20 Aligned_cols=324 Identities=15% Similarity=0.122 Sum_probs=166.1
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCC-CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYG-AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~ 145 (441)
.++..||+..|- ..+ ..+|.+.+++.+.+.... .+. +.....++.+.+++.. + ..+.+.++++++
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~------~~~~~~~~~~~la~~l~~~~----p-~~~~v~f~~sGs 114 (431)
T PRK06209 46 DGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGC------NFTRPSAIELDAAESFLELI----D-GADMVKFCKNGS 114 (431)
T ss_pred CCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCc------CCCCCCHHHHHHHHHHHHhC----C-ccceEEEecCHH
Confidence 356788887664 222 367899999999887532 122 2222223445554432 2 136899999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEe-CCCchhhHhHHHHhccccc---cccccCccceeEEeecCCCCCccCCCCCC-CCccE
Q 013521 146 SDISR-L--QMLLGSNVTVAVQ-DPSFPAYIDTSVIVGQAGK---FLKETGKYRNIVYMNCRPENNFFPDLSTT-SRTDI 217 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~-~p~y~~~~~~~~~~g~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-~~~~~ 217 (441)
+|... + .........|+.. .-+|.+..... .|.... .... ....+..++..+-..+...++.. .++.+
T Consensus 115 eA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~--~g~~~~~~~~~~~--~~~~~~~~~~~d~~~l~~~l~~~~~~~aa 190 (431)
T PRK06209 115 DATSAAVRLARAYTGRDLVARCADHPFFSTDDWF--IGTTPMSAGIPAS--VSALTVTFRYNDIASLEALFEDHPGRIAC 190 (431)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeccCccccccccc--cccCCCCCCCChh--HhccccccCCCCHHHHHHHHHhCCCCEEE
Confidence 99886 4 2222223455554 33443321111 011000 0000 00011112211100000001111 24445
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc-cCCCcceeEEEecCCcccCCccceeE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE-IPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
|+ ..|- .|...+.+.+++|.++|++||+++|.||++..+... ...... +.-.+| +.+++|.+| .|+.+|
T Consensus 191 vi-~Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~--~~g~~~~~gv~PD----i~t~gK~lg-gG~p~~ 260 (431)
T PRK06209 191 VI-LEPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWH--MRGAQKLYGIVPD----LSCFGKALG-NGFAVS 260 (431)
T ss_pred EE-Eccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcC--cchhhHHhCCCcc----eeeehhhhc-CCcccE
Confidence 44 4552 344678899999999999999999999998765322 111221 221234 467899998 789999
Q ss_pred EEEeeccccccCCchhHHH--H-----HH-HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH--
Q 013521 297 WTVVPEELRYSNGYPVIKD--F-----NR-IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ-- 366 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~--~-----~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~-- 366 (441)
.++++++++ +. + .. .......+.+++...++.+.++.-.. +...++.+++.+++.+.|+
T Consensus 261 av~~~~~i~--------~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~~ 329 (431)
T PRK06209 261 ALAGKREYM--------ELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRD---EDVIERLHEQGAKLAAGVNEA 329 (431)
T ss_pred EEEEHHHHH--------hhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHH
Confidence 999988764 21 1 00 00122333556666666666652111 1233444444445544444
Q ss_pred --hCCCeee-CCCCceEEEEEc--C--CCChH----HHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHH
Q 013521 367 --SLGLKVN-GGKNAPYVWVQF--P--GSSSW----DVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACR 435 (441)
Q Consensus 367 --~~g~~~~-~~~~~~~~~~~~--~--~~~~~----~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~ 435 (441)
++++... ...+.+..+.-+ . +.... .+...+++ +||.+.| ++|+...++++++++++
T Consensus 330 ~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~p~-----------l~is~~ht~~dId~~l~ 397 (431)
T PRK06209 330 AAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIR-RGVLMPS-----------LVVSYAHGDADIERTID 397 (431)
T ss_pred HHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHH-CCccccc-----------ccccccCCHHHHHHHHH
Confidence 3444321 112322222211 1 11111 34455554 5997622 57776779999999999
Q ss_pred HHHhhC
Q 013521 436 RLKNFL 441 (441)
Q Consensus 436 ~l~~~l 441 (441)
+|.+++
T Consensus 398 ~l~~~l 403 (431)
T PRK06209 398 AVHGAL 403 (431)
T ss_pred HHHHHH
Confidence 998763
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-09 Score=108.65 Aligned_cols=206 Identities=13% Similarity=0.101 Sum_probs=128.2
Q ss_pred CccEEEEcCC--CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 214 RTDIIFFCSP--NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 214 ~~~~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
++.+++ ..| +.-.|.+ .+++.++++.++|++||+++|.||++..|...+.......+.-.|| |-+++|.++
T Consensus 584 ~iAAvI-~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PD----Ii~~gKgLt- 657 (817)
T PLN02974 584 HIAALI-IEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPD----IACYAKLLT- 657 (817)
T ss_pred CEEEEE-EeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCC----EEeeccccc-
Confidence 455544 566 5666876 4789999999999999999999999998765553222222332455 445899998
Q ss_pred cc-ceeEEEEeeccccccCCchhHHHHHH------HHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHH
Q 013521 291 TG-VRLGWTVVPEELRYSNGYPVIKDFNR------IVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIV 362 (441)
Q Consensus 291 ~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~ 362 (441)
.| +.+|.+++++++. +.+.. +....+++.++++.+++.+.|+.-.. +...++.+.-++..+.+.
T Consensus 658 gG~~Plaa~l~~~~I~--------~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~ 729 (817)
T PLN02974 658 GGLVPLAATLATEEVF--------EAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWD 729 (817)
T ss_pred CCCCccEEEEEcHHHH--------HhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 89 6999999998873 33321 11233455788888888877762111 112233333333333333
Q ss_pred HH----HHhCC-CeeeCCCCceEEEEEcCCC-C--------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecC
Q 013521 363 DA----FQSLG-LKVNGGKNAPYVWVQFPGS-S--------SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGH 426 (441)
Q Consensus 363 ~~----L~~~g-~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~ 426 (441)
+. |.++. +.-.. .-|.++-+++... . ...+.+.++.++||.++|. .+.||+. ...+
T Consensus 730 ~~l~~~l~~~p~V~~VR-g~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~-------Gnvi~l~pP~~i~ 801 (817)
T PLN02974 730 EELVRAISSLPNVERVV-SLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL-------GNVVYLMCGPTTS 801 (817)
T ss_pred HHHHHHHhhCCCeeEEE-eeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec-------CCEEEEeCCCCCC
Confidence 33 34342 22122 2466666776421 1 1234555552569999883 1478875 4568
Q ss_pred HHHHHHHHHHHHhhC
Q 013521 427 REYISEACRRLKNFL 441 (441)
Q Consensus 427 ~~~~~~~l~~l~~~l 441 (441)
++++++++++|.+.|
T Consensus 802 ~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 802 PETCTRLLRKVYRRL 816 (817)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998754
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-11 Score=103.38 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=55.3
Q ss_pred CCCCCcCcHHHHHHHHHHHhhh----CCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchh
Q 013521 109 GYGAEQGNMALRTAIADKFYKD----MGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPA 170 (441)
Q Consensus 109 ~Y~~~~g~~~lr~~ia~~l~~~----~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~ 170 (441)
.|++..|..+||+++|+|+.+. ..+++++|++|+|+++++.+ ++.+++|||.|++++|+|++
T Consensus 87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 4888889999999999999763 34789999999999999998 57888999999999999974
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=106.13 Aligned_cols=269 Identities=17% Similarity=0.211 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCC-CcCcHHHHHHHHHHHhhhCCCCCCcEE---EcCCcHHHHHH-HHHhcCCCCEEE
Q 013521 88 DIITSAMAEHAFALSTVKGYKGYGA-EQGNMALRTAIADKFYKDMGIEGDEIF---ISDGAQSDISR-LQMLLGSNVTVA 162 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~I~---~t~G~~~al~~-l~~l~~~gd~Vl 162 (441)
..+++|+++.--......+..+|+- +.|-..|.+..|+. ++.+. .++ ++|| |+||.+ |+.+++|||+.+
T Consensus 27 ~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~v----fgaE~-ALVRpq~vSG-THAi~~~Lfg~LrpGD~ll 100 (403)
T PF06838_consen 27 LKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADV----FGAED-ALVRPQFVSG-THAIALALFGVLRPGDELL 100 (403)
T ss_dssp HHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHH----CT-SE-EEEETTS-SH-HHHHHHHHHHH--TT-EEE
T ss_pred HHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHH----hCchh-hhhcccccch-HHHHHHHHHhcCCCCCeEE
Confidence 4567777764332222344445653 34555555555555 45432 222 4454 567776 999999999998
Q ss_pred Ee-CCCchhhHhHHHHhcc-ccccccccCccceeEEeecCCCCCccCCCC-C--CCCccEEEEc-CCCCccccCCCHHHH
Q 013521 163 VQ-DPSFPAYIDTSVIVGQ-AGKFLKETGKYRNIVYMNCRPENNFFPDLS-T--TSRTDIIFFC-SPNNPTGHAATWQQL 236 (441)
Q Consensus 163 v~-~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~--~~~~~~v~i~-~p~NPtG~~~~~~~~ 236 (441)
.. -.-|....+.+...|. .|-+...+ +....+++.+++.++.+.. + .+++|+++|. +..+-+--.++.+++
T Consensus 101 ~~tG~PYDTL~~VIG~~g~~~GSL~e~G---i~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I 177 (403)
T PF06838_consen 101 SITGKPYDTLEEVIGIRGNGPGSLKEFG---IKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEI 177 (403)
T ss_dssp ESSSS--CCHHHHHTSSSSSSSSTGGGT----EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHH
T ss_pred EcCCCchhhHHHHhCCCCCCCCChHHhC---ceeEEEeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHH
Confidence 64 3456666666655553 34444444 4777888887665543311 1 3789999997 666666677899999
Q ss_pred HHHHHHHHH--cCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce--eEEEEeeccccccCCchh
Q 013521 237 KKLVEFAKA--NGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR--LGWTVVPEELRYSNGYPV 312 (441)
Q Consensus 237 ~~i~~~a~~--~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r--~G~l~~~~~~~~~~~~~~ 312 (441)
+++++++++ .++++++|.+|++|+-...|..+ +-.++.+|+-|..| .|+= -||+++.++++
T Consensus 178 ~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~v-------GADl~aGSLIKNpG-GgiAptGGYIaGr~~lV------- 242 (403)
T PF06838_consen 178 KEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEV-------GADLMAGSLIKNPG-GGIAPTGGYIAGRKDLV------- 242 (403)
T ss_dssp HHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGG-------T-SEEEEETTSGGG-TTT-SS-EEEEESHHHH-------
T ss_pred HHHHHHHHhhCCCeEEEEeCCcceeccccCcccc-------chhheeccceeCCC-CCccCcCCEEechHHHH-------
Confidence 999999996 47999999999999876555433 12399999999877 5543 38999999985
Q ss_pred HHHHHHHHhhhcCC----CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCc----eEEEEE
Q 013521 313 IKDFNRIVCTCFNG----ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNA----PYVWVQ 384 (441)
Q Consensus 313 ~~~~~~~~~~~~~~----~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~~ 384 (441)
++.....+....+ .+.-... .++ .++-.-..+..+--+-.-+....++++|+++.|.++. ..-.+.
T Consensus 243 -e~~a~RLTaPGiG~e~G~t~~~~R---~~~--QGlFlAP~vV~eAlKgaif~A~~fe~lG~~v~P~~~~~R~DiIQai~ 316 (403)
T PF06838_consen 243 -ERAAYRLTAPGIGKEVGATLGTNR---LMF--QGLFLAPHVVGEALKGAIFAAALFEKLGFEVSPKPDDPRSDIIQAIE 316 (403)
T ss_dssp -HHHHHHHS-TTTGGGSS--TTTHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEES-TTS--SSS-EEEE
T ss_pred -HHHHhhhcCCccccccccCcchHH---HHH--hHHhhchHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCCCCceEEEEE
Confidence 4433322222111 1110010 111 1111123344444445566777788889999775443 346666
Q ss_pred cC
Q 013521 385 FP 386 (441)
Q Consensus 385 ~~ 386 (441)
+.
T Consensus 317 l~ 318 (403)
T PF06838_consen 317 LG 318 (403)
T ss_dssp -S
T ss_pred CC
Confidence 65
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-09 Score=104.09 Aligned_cols=232 Identities=16% Similarity=0.171 Sum_probs=139.7
Q ss_pred CcCc-HHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCc
Q 013521 113 EQGN-MALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGK 190 (441)
Q Consensus 113 ~~g~-~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~ 190 (441)
+.|. .+..+..|+.+ +.+ .--+++||++.++.+ +++++.+||.|+++.++|-+.....-+.|.
T Consensus 68 p~G~i~eAqe~aA~~f----gAd-~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa---------- 132 (557)
T COG1982 68 PEGPIKEAQELAARVF----GAD-HTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGA---------- 132 (557)
T ss_pred CCccHHHHHHHHHHHh----CCC-ceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCC----------
Confidence 3344 44444444443 543 478899999999987 789999999999999999999888888884
Q ss_pred cceeEEeecCCCCCcc-----------CCCCCCCCc-cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc
Q 013521 191 YRNIVYMNCRPENNFF-----------PDLSTTSRT-DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA 258 (441)
Q Consensus 191 ~~~v~~v~~~~~~~~~-----------~~~~~~~~~-~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~ 258 (441)
..+++....+..+. ..+.+.+.. |+++++||.. -|+++. .++|+++++..++++.+|+++..
T Consensus 133 --~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~ 206 (557)
T COG1982 133 --TPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPA 206 (557)
T ss_pred --ceEEecCCCCccccccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCcc
Confidence 55555443322111 111123445 8889877766 699999 88899999999999999999884
Q ss_pred cccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc-ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHH
Q 013521 259 YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE-LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLA 337 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 337 (441)
........+-... ....++...|.+|.++ +.....++..++. .++ .+++.........+.+.....|.+.
T Consensus 207 ~~~~~~~l~~~~~--~~~~~~~tqS~HK~l~-alSQaS~iHv~~~~~~~------~~r~nea~~~h~STSPsY~l~ASlD 277 (557)
T COG1982 207 HFDFSPMLPESAL--NGGADFVTQSTHKLLA-ALSQASMIHVKDGRAVN------HERFNEALMMHQSTSPSYPLMASLD 277 (557)
T ss_pred cccccccCcchhh--hcCceEEEechhhhhh-hhhhhHHHhhCCCccCC------HHHHHHHHHHHccCCchHHHHHHHH
Confidence 3222111111122 1345799999999985 5445556666652 321 2445443333322223222222222
Q ss_pred h----cCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC
Q 013521 338 C----LSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNG 374 (441)
Q Consensus 338 ~----l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 374 (441)
. ....+....+...+..-+.++.+.+.+++. ++.+..
T Consensus 278 ~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~ 319 (557)
T COG1982 278 VARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQ 319 (557)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecc
Confidence 2 222232333333455555666666666665 454433
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.6e-11 Score=112.96 Aligned_cols=274 Identities=13% Similarity=0.124 Sum_probs=157.4
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..+. ..+ .-+|.+.+++++.+..... ........+.+.++++.+.+..+-..+.+++++++++|
T Consensus 15 G~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~------~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseA 88 (339)
T PF00202_consen 15 GREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNY------VSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEA 88 (339)
T ss_dssp SEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSS------CSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHH
T ss_pred CCEEEECCCCccceecCCCccccchhHHHHhhhccc------ccccceeccchhhhhhhhhhccccccceeeeccCchHH
Confidence 45678886542 222 2568899999998876421 11122344566677777765444456799999999999
Q ss_pred HHH-H-HHh------c-CCCCEEEEeCCCchhhHhHHHHhcccccc-ccccCccceeEEeecCCCCC----------ccC
Q 013521 148 ISR-L-QML------L-GSNVTVAVQDPSFPAYIDTSVIVGQAGKF-LKETGKYRNIVYMNCRPENN----------FFP 207 (441)
Q Consensus 148 l~~-l-~~l------~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~-~~~~~~~~~v~~v~~~~~~~----------~~~ 207 (441)
++. + +.. . .....|+....+|++.............+ ......+..+..+|...... +..
T Consensus 89 ve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 168 (339)
T PF00202_consen 89 VEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEE 168 (339)
T ss_dssp HHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHH
Confidence 986 4 222 1 24468999999999865444443221110 01111112456666643211 000
Q ss_pred CCC--CCCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEec
Q 013521 208 DLS--TTSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISS 283 (441)
Q Consensus 208 ~~~--~~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 283 (441)
.+. ..+++.+++ ..| +.-.|.. .+.+.+++|.++|++||+++|.||++..+...+.......+.-.|| ++ +
T Consensus 169 ~~~~~~~~~iaavi-vEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PD--iv--~ 243 (339)
T PF00202_consen 169 LIAALNADEIAAVI-VEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPD--IV--T 243 (339)
T ss_dssp HHHHHHGGGEEEEE-EESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSS--EE--E
T ss_pred HHHhhcCCcEEEEE-EeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCc--cc--c
Confidence 000 124455544 466 4445644 5788999999999999999999999998765554332333332455 33 3
Q ss_pred CCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 013521 284 FSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVD 363 (441)
Q Consensus 284 ~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 363 (441)
++|.++ .|+.+|.+++++++. +.+.......++..++++..++.+.|+.-.. +++.+..++..+++.+
T Consensus 244 ~gK~l~-gG~p~sav~~~~~i~--------~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~---~~~~~~~~~~g~~l~~ 311 (339)
T PF00202_consen 244 FGKGLG-GGLPISAVLGSEEIM--------EAFQPGSHGSTFGGNPLSCAAALATLEILEE---EDLLERVRELGERLRE 311 (339)
T ss_dssp EEGGGG-TTSSEEEEEEEHHHH--------TTSCTTSSTCTTTT-HHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHH
T ss_pred cccchh-hhhhcccccccchhh--------ccccccccccccccchHhhhhhhhHHHhhcc---HHHHHHHHHHHHHHHH
Confidence 679998 889999999998874 2221111334444677888878877762111 2233444444555555
Q ss_pred HHHh
Q 013521 364 AFQS 367 (441)
Q Consensus 364 ~L~~ 367 (441)
.|++
T Consensus 312 ~L~~ 315 (339)
T PF00202_consen 312 GLRE 315 (339)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-08 Score=106.49 Aligned_cols=337 Identities=12% Similarity=0.101 Sum_probs=196.3
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC-----CcCcHHHHHHHHHHHhh
Q 013521 55 FPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA-----EQGNMALRTAIADKFYK 129 (441)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~ia~~l~~ 129 (441)
..++.+.......++.. -..-++.|.++.-.|+.+.+.+.+ +. ..+..|+| .+|.-+..=.+...+.+
T Consensus 48 E~e~~~~~~~la~~N~~-~~~fig~G~y~~~~p~~i~r~v~~---~p---~~~TaytPyQ~EisQG~Le~l~e~Qt~i~e 120 (939)
T TIGR00461 48 EYEALAHLKKIASKNHK-FKSYIGMGYYGTILPPVIQRNLLE---NP---GWYTAYTPYQPEISQGRLEALLNFQTVVSD 120 (939)
T ss_pred HHHHHHHHHHHHhcCCC-ccccCCCCcCCCcCChHHHHHHHh---Cc---hhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 44444544444444322 113346666666677776655554 21 12344544 23444433333333444
Q ss_pred hCCCCCCcEEEcCCcHHHHHH-HHHh-c--CCCCEEEEeCCCchhhHhHHH----HhccccccccccCccceeEEeecCC
Q 013521 130 DMGIEGDEIFISDGAQSDISR-LQML-L--GSNVTVAVQDPSFPAYIDTSV----IVGQAGKFLKETGKYRNIVYMNCRP 201 (441)
Q Consensus 130 ~~~~~~~~I~~t~G~~~al~~-l~~l-~--~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~~v~~v~~~~ 201 (441)
..|.+..|.-+..+++++.+. +++. . +++++|++++-.||.....++ ..| ++++.++.+
T Consensus 121 LtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g------------~~v~~~~~~- 187 (939)
T TIGR00461 121 LTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFG------------IEVIVVDCS- 187 (939)
T ss_pred HHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcC------------cEEEEEcHH-
Confidence 457888888899999988875 4443 2 234799999999998876665 344 477777542
Q ss_pred CCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEE
Q 013521 202 ENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEI 281 (441)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i 281 (441)
. +...-++.++++.+|++ +|.+.+ +++|++.++++|.+++++--..-+.. ..+..++ +-+|.+
T Consensus 188 --~----l~~~~~~~~v~~q~Pn~-~G~ied---~~~i~~~~h~~gal~~~~ad~~al~l---l~~Pge~----GaDi~v 250 (939)
T TIGR00461 188 --D----IKKAVDVFGCLLQYPAT-DGSILD---YKQLIDALHSHKSLVSVAADLMALTL---LTPPGHY----GADIVL 250 (939)
T ss_pred --H----HhhcCCEEEEEEECCCC-CeEEec---HHHHHHHHHHcCCEEEEEechHHhCC---cCCHHHc----CCcEEe
Confidence 1 22111466777778865 898874 99999999999999998532221111 1111222 223666
Q ss_pred ecCCcccCC----ccceeEEEEeecccccc------------C---Cc-----hhHHHHHHHHhhhcCCCcHHHHHHHHH
Q 013521 282 SSFSKFAGF----TGVRLGWTVVPEELRYS------------N---GY-----PVIKDFNRIVCTCFNGASNIVQAGGLA 337 (441)
Q Consensus 282 ~S~SK~~~~----~G~r~G~l~~~~~~~~~------------~---~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~ 337 (441)
++ +|.||+ .|.-.|++.+++++++. . .. ...+.+++.+..+..+++........+
T Consensus 251 g~-~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~ 329 (939)
T TIGR00461 251 GS-SQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVAS 329 (939)
T ss_pred eC-CCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHH
Confidence 54 344443 35558898888876521 0 00 001112233332222222222111111
Q ss_pred -hcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE--EEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCC
Q 013521 338 -CLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY--VWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG 414 (441)
Q Consensus 338 -~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 414 (441)
.+.-.+-+.+++..++...+..++.+.|++.|+++..+ .+| +.++++..+..++.++++++ ||.++..
T Consensus 330 ~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~fF~~~~v~~~~~~~~~i~~~~~~~-gi~l~~~------ 400 (939)
T TIGR00461 330 SYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINK--TWFDTLTVKVGNGISSELLKAAEEF-NINLRAV------ 400 (939)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CccceEEEEeCCCCHHHHHHHHHHC-CCeeeec------
Confidence 12223446678888888999999999999999887653 344 44555433566777776655 9997652
Q ss_pred CCCeEEEEe--ecCHHHHHHHHHHHH
Q 013521 415 GNEHIRVSA--FGHREYISEACRRLK 438 (441)
Q Consensus 415 ~~~~iRls~--~~~~~~~~~~l~~l~ 438 (441)
.++.+++|+ .+++++++.+++.+.
T Consensus 401 ~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 401 DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 245899997 458999999999884
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.1e-09 Score=95.75 Aligned_cols=275 Identities=15% Similarity=0.168 Sum_probs=158.8
Q ss_pred CCCCCeEEeCCCCC-C--CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH
Q 013521 69 HPDARLIRLGIGDT-T--QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ 145 (441)
Q Consensus 69 ~~~~~~i~l~~g~~-~--~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~ 145 (441)
..+.+.||+..+-- . -+..|++.+++.+...+++ .....|...+ ..++.+.+.+.+.+ -+++.|.+.++++
T Consensus 53 ~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~--hs~~~~~t~e-av~l~~~l~~~~~~---~~~~rvff~nsGT 126 (433)
T KOG1401|consen 53 PDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLG--HSSNGYFTLE-AVELEEVLSAVLGK---GSAERVFFCNSGT 126 (433)
T ss_pred CCcceeeeeccceeccccCCCCHHHHHHHHHHHhhhe--eccCccccHH-HHHHHHHHHhcccC---CCccEEEEecCCc
Confidence 34567888775531 1 2357899999999888775 2333332222 34444444444322 2789999999999
Q ss_pred HHHHH-H-HH--hcCCC---C--EEEEeCCCchhhHhHH-HHhcccc--c-cccccCccceeEEeecCCCCCccCCCCC-
Q 013521 146 SDISR-L-QM--LLGSN---V--TVAVQDPSFPAYIDTS-VIVGQAG--K-FLKETGKYRNIVYMNCRPENNFFPDLST- 211 (441)
Q Consensus 146 ~al~~-l-~~--l~~~g---d--~Vlv~~p~y~~~~~~~-~~~g~~~--~-~~~~~~~~~~v~~v~~~~~~~~~~~~~~- 211 (441)
+|... | ++ ....+ + .++....+|++-.-.+ ...+... . +.+.. -+++....++...+..-++.
T Consensus 127 eAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~---p~v~~~~ynd~t~l~k~~~~h 203 (433)
T KOG1401|consen 127 EANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIA---PDVVTAEYNDSTALEKLFESH 203 (433)
T ss_pred HHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCC---CceeecccCCHHHHHHHHHhC
Confidence 99886 4 22 22222 2 3888888998743222 2222110 0 00000 01111111110000000111
Q ss_pred CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCcccccCCCcceeEEEecCCcc
Q 013521 212 TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYEIPGAREVAIEISSFSKF 287 (441)
Q Consensus 212 ~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~ 287 (441)
.....+|+ ..| +---|.. .+++.++.|...|+++|+++|.||+...|..-+. ...+.. -.|| |.++.|.
T Consensus 204 ~~~IaAVI-vEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~--~~PD----I~t~aK~ 276 (433)
T KOG1401|consen 204 KGEIAAVI-VEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFG--VTPD----ITTVAKP 276 (433)
T ss_pred CCceEEEE-EecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhC--cCCc----ceeehhh
Confidence 12355555 466 5556654 6889999999999999999999999987655442 112222 2345 5678999
Q ss_pred cCCccceeEEEEeeccccccCCchhHHHHHH---HHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHH
Q 013521 288 AGFTGVRLGWTVVPEELRYSNGYPVIKDFNR---IVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVD 363 (441)
Q Consensus 288 ~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~ 363 (441)
++ .|+.+|..++++++. +.+.. +......+.++++..++...++.-.. ++++++.++-+..++.+.+
T Consensus 277 L~-gGlPigA~~v~~kV~--------~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e 347 (433)
T KOG1401|consen 277 LG-GGLPIGATGVRDKVA--------EMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDE 347 (433)
T ss_pred cc-CCceeEEEeehHHHH--------hhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 98 999999999988873 33321 12234455778888888777763322 4556666666666666666
Q ss_pred HHHhC
Q 013521 364 AFQSL 368 (441)
Q Consensus 364 ~L~~~ 368 (441)
.+.+.
T Consensus 348 ~~~~~ 352 (433)
T KOG1401|consen 348 YLKKT 352 (433)
T ss_pred HhccC
Confidence 66654
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-08 Score=94.04 Aligned_cols=323 Identities=16% Similarity=0.149 Sum_probs=187.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH-
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL- 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l- 151 (441)
-+|||-+......+.+..+++|.. + + -.|+.++....|.+.+++.+ |. +.++.|.-+..+-.++
T Consensus 42 V~IDLrSDTgT~apS~~m~aAM~~-----G--D--D~Y~gdpSv~~Lee~vael~----G~--E~alpthqGRgaE~Il~ 106 (467)
T TIGR02617 42 VFIDLLTDSGTGAVTQSMQAAMMR-----G--D--EAYSGSRSYYALAESVKNIF----GY--QYTIPTHQGRGAEQIYI 106 (467)
T ss_pred eEEECccCCCCCCCCHHHHHHHHc-----C--C--cccccCchHHHHHHHHHHHh----CC--ceEEECCCCchHHHHHH
Confidence 468888776654566777777775 1 1 24777788899999999986 43 4577786667666664
Q ss_pred HHhcC-CCCEEEEeCC----Cchh----hHhHHHHhccccccccccCccceeEEeec----------CCCCCccCC-CCC
Q 013521 152 QMLLG-SNVTVAVQDP----SFPA----YIDTSVIVGQAGKFLKETGKYRNIVYMNC----------RPENNFFPD-LST 211 (441)
Q Consensus 152 ~~l~~-~gd~Vlv~~p----~y~~----~~~~~~~~g~~~~~~~~~~~~~~v~~v~~----------~~~~~~~~~-~~~ 211 (441)
..+++ |||++++..+ .+.. ....+...| ..++.++. ...++++++ ++.
T Consensus 107 ~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G------------~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~ 174 (467)
T TIGR02617 107 PVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQING------------CTARNVYTKEAFDTGVRYDFKGNFDLEGLER 174 (467)
T ss_pred HhhcccccccccccccccccceEEEEecchHHHHHcC------------ceeecccchhhcccccCCCCCCCcCHHHHHH
Confidence 56677 7888886554 1211 123344455 23333321 112333222 111
Q ss_pred ---C---CCccEEEEcCCCC-ccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-ccc-------CCCCCccccc----C
Q 013521 212 ---T---SRTDIIFFCSPNN-PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YIT-------DPSPRSIYEI----P 272 (441)
Q Consensus 212 ---~---~~~~~v~i~~p~N-PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~-------~~~~~~~~~~----~ 272 (441)
. .+...+...--+| --|+++|.+.++++.++|++||+.++.|.+--. ..+ .....++..+ .
T Consensus 175 ~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~ 254 (467)
T TIGR02617 175 GIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETY 254 (467)
T ss_pred HHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhh
Confidence 1 1222322221134 347899999999999999999999999986432 111 0112344333 1
Q ss_pred CCcceeEEEecCCcccCCc-cceeEEEEeeccccccCCchhHHHHHHHHhh--------hcCCCcHHHHHHHHHhcCCC-
Q 013521 273 GAREVAIEISSFSKFAGFT-GVRLGWTVVPEELRYSNGYPVIKDFNRIVCT--------CFNGASNIVQAGGLACLSPD- 342 (441)
Q Consensus 273 ~~~~~~i~i~S~SK~~~~~-G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~l~~~- 342 (441)
...| .+.-|+||.++.| | |+++++++.+ .+.+...+.. ++.+.+.-...|.+.=|.+.
T Consensus 255 ~~aD--svt~slsKglgApvG---g~Lag~d~~~-------~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~ 322 (467)
T TIGR02617 255 KYAD--MLAMSAKKDAMVPMG---GLLCFKDDSF-------FDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM 322 (467)
T ss_pred ccCC--EEEEEcCCCCCCccc---ceEEecchhH-------HHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcc
Confidence 2223 5566899999876 4 6778877621 1122222221 12233433344333233322
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcC---------CCChHHHHHHHHHhcCeEEeC-CCCc-
Q 013521 343 GFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP---------GSSSWDVFAEILEKTHILTIP-GSGF- 411 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ll~~~gi~v~p-g~~f- 411 (441)
..+++..+ -...++|.+.|.+.|+.+.. .+|.-++++.. ......+..+|-.+.||--.- |+..
T Consensus 323 ~~~yl~~r----i~qv~yl~~~L~~~Gvpi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~ 397 (467)
T TIGR02617 323 NLDWLAYR----INQVQYLVNGLEEIGVVCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLL 397 (467)
T ss_pred cHHHHHHH----HHHHHHHHHHHHhCCCcEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceec
Confidence 11333333 34567888999999998877 78888888642 134567888888888886443 3321
Q ss_pred C--CC-------CCCeEEEEee---cCHHHHHHHHHHHHh
Q 013521 412 G--PG-------GNEHIRVSAF---GHREYISEACRRLKN 439 (441)
Q Consensus 412 ~--~~-------~~~~iRls~~---~~~~~~~~~l~~l~~ 439 (441)
+ +. .-..+|+++- -+.+.++...++|..
T Consensus 398 ~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~ 437 (467)
T TIGR02617 398 GRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKH 437 (467)
T ss_pred ccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHH
Confidence 1 11 1257999972 266777777777654
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-08 Score=97.99 Aligned_cols=342 Identities=17% Similarity=0.183 Sum_probs=169.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCC
Q 013521 57 EISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIE 134 (441)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~ 134 (441)
++.+.......+... ..--++.|..+.-.|+.+.+.+.+ +......+.-|+| .+|..+..-.+..++.+..|.+
T Consensus 51 e~~r~~~~la~kN~~-~~~fiG~G~y~~~~P~~i~~~i~~---~~ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmd 126 (429)
T PF02347_consen 51 ELLRHLERLASKNKS-YTSFIGAGSYTHYVPAVIDRNILS---RPEFYTAYTPYQPEISQGRLQALFEYQSMICELTGMD 126 (429)
T ss_dssp HHHHHHHHHHTTS---TTS---CTTT-----HHHHH-HHC---CHHCCCS-STTSGGGBHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcCCC-CCccccccccCceeChhhcCcccc---ChhhhccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 344444444444322 222345555555455654442322 2111123334444 4555555445555555544665
Q ss_pred CCcEEEcCCcHHHHHH-HHH--hc-CCCCEEEEeCCCchhhHhHHHHhcc-ccccccccCccceeEEeecCCCCCccCCC
Q 013521 135 GDEIFISDGAQSDISR-LQM--LL-GSNVTVAVQDPSFPAYIDTSVIVGQ-AGKFLKETGKYRNIVYMNCRPENNFFPDL 209 (441)
Q Consensus 135 ~~~I~~t~G~~~al~~-l~~--l~-~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 209 (441)
.-+.-+-.|++++-.. ++. .. +.+++|+++.-.||.+....+.... .+ ++++.++.++++..+
T Consensus 127 vaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g---------~~iv~~~~~~~~~~d--- 194 (429)
T PF02347_consen 127 VANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLG---------IEIVEVPLDEDGTTD--- 194 (429)
T ss_dssp EE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCC---------EEEEEE-BBTTCSB----
T ss_pred ccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCC---------eEEEEecccccCCcc---
Confidence 5566677888877665 332 33 2346999999999998876655432 12 588888887643322
Q ss_pred CCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC
Q 013521 210 STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 210 ~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
.+++.+|++.+||+ .|.+-+ +++|.++++++|.++|+ .+.- ..... -.+..++ +-+|.+++ +|.||
T Consensus 195 --~~~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~-~ad~-~aL~~-l~~Pge~----GADI~vg~-~Q~fg 260 (429)
T PF02347_consen 195 --DDDTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV-GADP-NALGG-LKSPGEY----GADIVVGE-HQTFG 260 (429)
T ss_dssp --STTEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE-CGGC-CGCCT-C--GGGG----T-SEEEEC-CTTTT
T ss_pred --ccCeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE-ecCH-HHHhC-cCChhhc----CccEEeeC-CCCCc
Confidence 46889999999976 898866 99999999999999887 3322 22211 1111222 22366776 78766
Q ss_pred C----ccceeEEEEeecccccc------------CC--------chhHHHHHHHHhhhcCCCcHHHH-HHHHHhcCCCcH
Q 013521 290 F----TGVRLGWTVVPEELRYS------------NG--------YPVIKDFNRIVCTCFNGASNIVQ-AGGLACLSPDGF 344 (441)
Q Consensus 290 ~----~G~r~G~l~~~~~~~~~------------~~--------~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~l~~~~~ 344 (441)
. .|--.|++.+.+++++. +. ....+.+++.+..+..+++.... .++...+.-.|.
T Consensus 261 ~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~ 340 (429)
T PF02347_consen 261 IPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGP 340 (429)
T ss_dssp ---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCH
Confidence 4 46678999999887522 00 01112344444444443333222 222223322455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceE--EEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEE
Q 013521 345 QALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPY--VWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRV 421 (441)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRl 421 (441)
+.+++..+....+..++.+.|.+. ++.+.. ..+| +....+. ....+++++ ++.-- -.+.....+++-+
T Consensus 341 ~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~--~~f~e~v~~~~~~----~~~~~l~~~-~~~~g--l~~~~~~~~~~li 411 (429)
T PF02347_consen 341 EGLREIAERIHLNAHYLAERLKKIYGLPFDN--PFFFEFVVVFSKD----KEVEELLKR-GIEGG--LNLRYPDDGALLI 411 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTBECSSS--SSBSSEEEEESS-----HHHHHHHHT-T------EEEGGG-SSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCC--CCceeeeeecCCc----HHHHHHHHH-HHhcC--CCccccCCCeEEE
Confidence 778999999999999999999986 444332 3333 3333332 223334433 33211 1112223447777
Q ss_pred Eee--cCHHHHHHHHHHH
Q 013521 422 SAF--GHREYISEACRRL 437 (441)
Q Consensus 422 s~~--~~~~~~~~~l~~l 437 (441)
++. .++++++.+++.|
T Consensus 412 ~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 412 CVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp E--TT--HHHHHHHHH--
T ss_pred EccCCCCHHHHHHHHhcC
Confidence 773 3688999888764
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-08 Score=90.53 Aligned_cols=320 Identities=13% Similarity=0.135 Sum_probs=182.9
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH---HHhc----C-
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL---QMLL----G- 156 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l---~~l~----~- 156 (441)
..+|.+++++++....+- +.+.-.|. .+--+.++|+...++. +-++.++-+.+|.... .+.+ +
T Consensus 75 hchpki~~aLqeq~~kLt-lssrafYn------d~~~~f~~~vt~lf~~--~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ 145 (427)
T KOG1402|consen 75 HCHPKIIKALQEQADKLT-LSSRAFYN------DVLGEFAEYVTKLFGY--DKVLPMNTGAEAVETACKLARKWGYRKKN 145 (427)
T ss_pred CCCHHHHHHHHHHHhHhh-hhhHHHhh------hhHHHHHHHHHHhcCc--ceeeecccchhHHHHHHHHHHHHHHhhcc
Confidence 478999999999887532 12222242 2223344444333443 5666666667777642 2211 2
Q ss_pred -CC-C-EEEEeCCCchhhHhHHHHhcccc----ccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCC-CCccc
Q 013521 157 -SN-V-TVAVQDPSFPAYIDTSVIVGQAG----KFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSP-NNPTG 228 (441)
Q Consensus 157 -~g-d-~Vlv~~p~y~~~~~~~~~~g~~~----~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p-~NPtG 228 (441)
|. . .|+....+|++-.-.+-.++-.. .|-+... ..+..+|..+...+...+. .++..+ ++..| |---|
T Consensus 146 ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P--~~~~~v~Y~d~eale~~l~-~~~vaa-FivEPIQGEaG 221 (427)
T KOG1402|consen 146 IPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLP--GVVDKVPYGDAEALEVALK-SPNVAA-FIVEPIQGEAG 221 (427)
T ss_pred CCccceeEEEecccccCceeeeEEecCCcchhhccCCCCC--CcceeeccCCHHHHHHHhc-CCCeeE-EEeeccccccc
Confidence 32 2 34445556665321111111000 0000000 0123333322111111122 256666 44577 88888
Q ss_pred cCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC-CcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 229 HAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 229 ~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
++. |+..++++.++|.+||+++|.||+...+...+.... ..... .||.++ |.|.++-.=+.+..+++.++++
T Consensus 222 VvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la-~d~env~PDivi----lgKalSGG~~Pvsavl~~~~im- 295 (427)
T KOG1402|consen 222 VVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLA-CDYENVRPDIVI----LGKALSGGVYPVSAVLADDDIM- 295 (427)
T ss_pred eEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEE-eehhhcCCCeEE----EeccccCCeeeeEEEEecHHHH-
Confidence 765 567899999999999999999999997766553211 11211 355433 6788863334577777877774
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CC----eeeCCCCceE
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GL----KVNGGKNAPY 380 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~----~~~~~~~~~~ 380 (441)
-.+......++.+.+++...++.++|+- ..-+++.++.++.-..++..|.++ .+ +... ..|.+
T Consensus 296 -------~~~~pgeHgsTyggNpLg~~vaiAalev---i~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VR-GrGl~ 364 (427)
T KOG1402|consen 296 -------LNIKPGEHGSTYGGNPLGCAVAIAALEV---IVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVR-GRGLL 364 (427)
T ss_pred -------hccCCCccccccCCChHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccccchhheee-ccceE
Confidence 2233333445566789999989888862 112666777777778888888877 22 2222 25666
Q ss_pred EEEEcC-----CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFP-----GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~-----~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.-+.+. +.+..+.+-. +++.|++--|-+ .+-||++ +.-++++++++++.|.+.+
T Consensus 365 ~ai~i~~~~~~~~~aw~~cl~-lk~~g~LAkptH------~~IiRfaPPL~I~e~dl~eg~e~i~k~i 425 (427)
T KOG1402|consen 365 NAIVINPSKTSGQDAWDVCLA-LKENGLLAKPTH------GNIIRFAPPLVISEEDLREGIEAIEKTI 425 (427)
T ss_pred EEEEeccccccchhHHHHHHc-ccccccccCCCC------CCeEEecCCcccCHHHHHHHHHHHHHHh
Confidence 655553 1233444444 556688776632 4589998 5668999999999998753
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=98.13 Aligned_cols=272 Identities=13% Similarity=0.126 Sum_probs=160.9
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-------CCcEEEcCCcHHHHHH-HHH----hc--
Q 013521 90 ITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-------GDEIFISDGAQSDISR-LQM----LL-- 155 (441)
Q Consensus 90 ~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-------~~~I~~t~G~~~al~~-l~~----l~-- 155 (441)
+-+.+...+. .....|...+...++.+.+.+|+.+.++.+ ...=++|+|+++++.. +.. ..
T Consensus 56 ~~~~l~~~~n-----~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~ 130 (373)
T PF00282_consen 56 LADLLASALN-----QNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPR 130 (373)
T ss_dssp HHHHHHHHHT------BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhc-----ccccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhh
Confidence 3444444443 333445555678889999999998866665 1356788999888654 321 11
Q ss_pred --CCC-----C-EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC-------CCCcc-EE
Q 013521 156 --GSN-----V-TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST-------TSRTD-II 218 (441)
Q Consensus 156 --~~g-----d-~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~-------~~~~~-~v 218 (441)
..| + .|++.+-+|.++...+..+| +.++.||+++++.++.+ +++ ..++- +|
T Consensus 131 ~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lG------------lg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~v 198 (373)
T PF00282_consen 131 SKAKGVEEIPKPVIYVSEQAHYSIEKAARILG------------LGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAV 198 (373)
T ss_dssp HHHHTTTHCSSEEEEEETTS-THHHHHHHHTT------------SEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhcccccccccccccccccccHHHHhcceee------------eEEEEecCCcchhhhHHHhhhhhcccccccccceee
Confidence 111 2 56677779999999999999 68999999875433322 221 12233 44
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc-CCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT-DPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~-~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+.+-....||.+=+ +++|.++|+++++++.+|.+|+...+ .+..... ..+.+.-.-+.-+++|.++ ....+|+
T Consensus 199 vat~Gtt~~Ga~D~---l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~--~~gi~~adSit~d~HK~l~-~P~~~~~ 272 (373)
T PF00282_consen 199 VATAGTTNTGAIDP---LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHL--LFGIERADSITIDPHKWLG-VPYGCGV 272 (373)
T ss_dssp EEEBS-TTTSBB-S---HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGG--GTTGGGESEEEEETTTTTS--SSS-EE
T ss_pred eccCCCcccccccC---HHHHhhhccccceeeeeccccccccccccccccc--ccccccccccccchhhhhc-CCcccee
Confidence 44566888998855 89999999999999999999997322 1111111 1112222345567999997 7779999
Q ss_pred EEeeccccccCC----chhHHHH-------HHHHhhhcCCCcH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 298 TVVPEELRYSNG----YPVIKDF-------NRIVCTCFNGASN-IVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 298 l~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~~-~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
+..+++...... ..+.... ......+.. .+. .....+-..++..|.+.++++.++..+..+++.+.|
T Consensus 273 ~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~-~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l 351 (373)
T PF00282_consen 273 LLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQ-GSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRL 351 (373)
T ss_dssp EEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSS-SSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccchHHHhccChhhhccccccccccccccccccc-ccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 988876421100 0000000 000001111 222 222222233333445677888888888999999999
Q ss_pred HhC-CCeeeCCCCceEEEEEc
Q 013521 366 QSL-GLKVNGGKNAPYVWVQF 385 (441)
Q Consensus 366 ~~~-g~~~~~~~~~~~~~~~~ 385 (441)
++. ++++..++.-..+.+++
T Consensus 352 ~~~~~~el~~~~~~~~vcFr~ 372 (373)
T PF00282_consen 352 RKDPRFELVNEPDLNIVCFRY 372 (373)
T ss_dssp HTSTTEEESSTTSSSEEEEEE
T ss_pred HhCCCEEEEcCCCceEEEEEe
Confidence 988 68887666777777765
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.3e-07 Score=82.28 Aligned_cols=339 Identities=15% Similarity=0.139 Sum_probs=188.1
Q ss_pred CcHHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHH-hhhCCCCCC----cEEEcCCcHHHHHHHHHhcCCC
Q 013521 86 IPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKF-YKDMGIEGD----EIFISDGAQSDISRLQMLLGSN 158 (441)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l-~~~~~~~~~----~I~~t~G~~~al~~l~~l~~~g 158 (441)
....+.+++-..+.+... .++. +|....-+.+-.|.+++-- .+-++++|+ ||-.-+|+.+.+..-.+++.|+
T Consensus 52 ts~aVmeAlGS~ltNKYS-EGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph 130 (477)
T KOG2467|consen 52 TSRAVMEALGSCLTNKYS-EGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPH 130 (477)
T ss_pred hHHHHHHHHhHHhhcccc-cCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCC
Confidence 567788888888865432 2322 2321111222233333321 125677766 8888999998888889999999
Q ss_pred CEEEEeCCCchhhH-hHHHHhccccccccccCccceeEEeecCCCCCcc-CC-CCC---CCCccEEEEcCCCCccccCCC
Q 013521 159 VTVAVQDPSFPAYI-DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFF-PD-LST---TSRTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 159 d~Vlv~~p~y~~~~-~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~-~~-~~~---~~~~~~v~i~~p~NPtG~~~~ 232 (441)
|+|+=.+.-..+.. +....-+.+.. . ..-+.+-.+..++++.++. -| +++ ..++|+|+--...+| ..++
T Consensus 131 ~RiMGLDLP~GGHLsHGy~T~~kkIS-a--~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~SaY~--R~~D 205 (477)
T KOG2467|consen 131 ERIMGLDLPSGGHLSHGYQTPTKKIS-A--TSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGTSAYS--RLID 205 (477)
T ss_pred CeeeeccCCCCCccccccccCCceee-e--eeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEeccccch--hhcc
Confidence 99986443333221 11111111000 0 0000122233444444421 11 222 368887663222222 2234
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccC---
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN--- 308 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~--- 308 (441)
-.++.++|.+.|.++++|-+|.. ++..+.-++..+. ..|+..+.+|.+ .|-|-|.+.-.+..-..+
T Consensus 206 ---YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey-----~DiVTTTTHKsL--RGPRg~mIFyRkGvk~~~~k~ 275 (477)
T KOG2467|consen 206 ---YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY-----CDIVTTTTHKSL--RGPRGAMIFYRKGVKSIKPKQ 275 (477)
T ss_pred ---HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc-----cceeeccccccc--cCCcceeEEEeccCCcCCCCC
Confidence 45566666788999999999874 4444332222222 238888999997 799988887655332111
Q ss_pred ----CchhHHHHHH-HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC-CCCceEEE
Q 013521 309 ----GYPVIKDFNR-IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG-GKNAPYVW 382 (441)
Q Consensus 309 ----~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~ 382 (441)
...+.+.+.. +....-.++-.....+.+-+|++-.........++..++.+.+.+.|.+.|.++.. ..+...+.
T Consensus 276 g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvL 355 (477)
T KOG2467|consen 276 GKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRGYKLVTGGTDNHLVL 355 (477)
T ss_pred CCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCceEecCCccceEEE
Confidence 1112222221 11111111222222223334443333456777888889999999999999988754 34456788
Q ss_pred EEcC-CCChHHHHHHHHHhcCeEEeCCCCcCC---CCCCeEEEEe--ec----CHHHHHHHHHHHHhh
Q 013521 383 VQFP-GSSSWDVFAEILEKTHILTIPGSGFGP---GGNEHIRVSA--FG----HREYISEACRRLKNF 440 (441)
Q Consensus 383 ~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~~~iRls~--~~----~~~~~~~~l~~l~~~ 440 (441)
+++. ..-+...++..++..+|.+.--..++. ..++.|||+. .+ .++++++..+-|.++
T Consensus 356 vDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~a 423 (477)
T KOG2467|consen 356 VDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRA 423 (477)
T ss_pred EeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHH
Confidence 8886 234456678888888888775555542 3478899994 11 367888777766543
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-07 Score=83.12 Aligned_cols=184 Identities=18% Similarity=0.275 Sum_probs=120.3
Q ss_pred CCCCCCC-CcCcHHHHHHHHHHHhhhCCCCCC--cEEEcCCcHHHHHH-HHHhcCCCCEEEEeCC-CchhhHhHHHHhcc
Q 013521 106 GYKGYGA-EQGNMALRTAIADKFYKDMGIEGD--EIFISDGAQSDISR-LQMLLGSNVTVAVQDP-SFPAYIDTSVIVGQ 180 (441)
Q Consensus 106 ~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~--~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p-~y~~~~~~~~~~g~ 180 (441)
+..+|+. +-|...|.+..|+-+ +.+.. +.-+.+|+. ||.+ |+.+++|||+.+...- -|....+....-|.
T Consensus 56 ~stGYGydD~GRdtLe~vyA~vf----~aE~a~VRpq~isGTH-AI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~ 130 (416)
T COG4100 56 GSTGYGYDDLGRDTLERVYAQVF----GAEAALVRPQIISGTH-AIACALFGILRPGDELLYITGSPYDTLEEVIGLRGE 130 (416)
T ss_pred CCCCCCccccchhHHHHHHHHHh----ccccceeeeeeecchh-HHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCC
Confidence 3345553 457677777777764 54432 444667655 6665 9999999999876433 45555555544442
Q ss_pred -ccccccccCccceeEEeecCCCCCccCC-CC--CCCCccEEEEc-CCCCccccCCCHHHHHHHHHHHHHc--CcEEEEc
Q 013521 181 -AGKFLKETGKYRNIVYMNCRPENNFFPD-LS--TTSRTDIIFFC-SPNNPTGHAATWQQLKKLVEFAKAN--GSIIVYD 253 (441)
Q Consensus 181 -~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~--~~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a~~~--~~~ii~D 253 (441)
.|.+...+ +....+|+..++..+.+ +. ..+++|+|.|. +..+-.--.++.+++++++++.++- ++++++|
T Consensus 131 ~~gSL~dfg---i~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVD 207 (416)
T COG4100 131 GQGSLKDFG---IKYKAVPLTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVD 207 (416)
T ss_pred CcccHHHhC---cceeecccccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEe
Confidence 12333333 35667777765543222 11 14789999986 4444444458899999999999974 7999999
Q ss_pred ccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce--eEEEEeecccc
Q 013521 254 SAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR--LGWTVVPEELR 305 (441)
Q Consensus 254 e~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r--~G~l~~~~~~~ 305 (441)
.+|++|.-...|..+ +-.++.+|+-|.-| .|+- -||+++.++++
T Consensus 208 NCYGEFvE~~EPt~v-------GaDliAGSLIKNpG-GgiaktGGYiaGk~~~v 253 (416)
T COG4100 208 NCYGEFVEEKEPTHV-------GADLIAGSLIKNPG-GGIAKTGGYIAGKAELV 253 (416)
T ss_pred ccchhhhhccCcccc-------chhhhccceeeCCC-CceeeccceeechHHHH
Confidence 999999876555433 12388999999876 5543 37999988885
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-05 Score=74.31 Aligned_cols=348 Identities=16% Similarity=0.150 Sum_probs=194.6
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCc--CcHHHHHHHHHH---Hhh
Q 013521 55 FPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQ--GNMALRTAIADK---FYK 129 (441)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~--g~~~lr~~ia~~---l~~ 129 (441)
..+...+.....+++. .-.--+|.|.++--.|+.+.+.+.+ +. ..+..|+|.+ -.+---|++=+| ...
T Consensus 59 E~e~l~~l~~ia~kN~-~~~sfiG~GyY~~~~P~vI~rnile---~p---ewyTaYTPYQpEISQGrLqaLfefQtlv~d 131 (450)
T COG0403 59 EYEALAELKEIASKNK-VFTSFIGAGYYDTYTPPVILRNILE---NP---EWYTAYTPYQPEISQGRLEALFEFQTLVAD 131 (450)
T ss_pred HHHHHHHHHHHHhcCc-hhhhhccCcccCCcCcHHHHHHhhc---Cc---cccccCCCCchhhhhHHHHHHHHHHHHHHH
Confidence 3344444444444432 1223467777777778876645444 22 3344555421 222233333333 223
Q ss_pred hCCCCCCcEEEcCCcHHHHHH-H--HHhcC-CCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCc
Q 013521 130 DMGIEGDEIFISDGAQSDISR-L--QMLLG-SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF 205 (441)
Q Consensus 130 ~~~~~~~~I~~t~G~~~al~~-l--~~l~~-~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~ 205 (441)
..|.+-.|--+-.++|.+-+. + .+.-+ +..+++|+.-.||......+..-.... .+++..+.++.
T Consensus 132 LTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g--------~~i~~~~~~d~--- 200 (450)
T COG0403 132 LTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLG--------IEIEVVDADDL--- 200 (450)
T ss_pred HhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCc--------eEEEEeccchh---
Confidence 345555566677778776664 3 33333 358999999999999888876542111 35666555421
Q ss_pred cCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEec
Q 013521 206 FPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISS 283 (441)
Q Consensus 206 ~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 283 (441)
.+++. ...+-++++.+|+. .| ...+++++|.+.++++|.++++=- +.. ...+...++..+-.|.+++
T Consensus 201 -~~l~~~~~~~~~gv~vQyP~~-~G--~~~~d~~~l~~~~h~~~al~~v~a---Dpl----aL~LL~pPGe~GADIvvG~ 269 (450)
T COG0403 201 -DDLESADDGDVFGVLVQYPNT-FG--IVEEDLRALIEAAHSAGALVIVAA---DPL----ALGLLKPPGEFGADIVVGS 269 (450)
T ss_pred -hhhhhccccCeEEEEEecCCC-CC--ccchhHHHHHHHHhhcCCEEEEEe---chh----HhhccCCccccCCceEEec
Confidence 12222 24677888877763 66 334569999999999998877421 100 1122222222333488888
Q ss_pred CCc---ccCCccceeEEEEeecccccc------------C--------CchhHHHHHHHHhhhcCCCcHHHHHHHHHhcC
Q 013521 284 FSK---FAGFTGVRLGWTVVPEELRYS------------N--------GYPVIKDFNRIVCTCFNGASNIVQAGGLACLS 340 (441)
Q Consensus 284 ~SK---~~~~~G~r~G~l~~~~~~~~~------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 340 (441)
..- -+|+.|..+||+.+.+++++. . .....+.+++-+..+..+++......+.+...
T Consensus 270 ~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~ 349 (450)
T COG0403 270 AQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYA 349 (450)
T ss_pred CcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHH
Confidence 765 344567889999998887522 0 01112234444444444443322221111111
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeeCCCCceE--EEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCC
Q 013521 341 -PDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVNGGKNAPY--VWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGG 415 (441)
Q Consensus 341 -~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 415 (441)
-.+-+.++++..+..+...++.+.|++. |+++.. ..+| +.++++......++.+.. ..|+-++.-.
T Consensus 350 ~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~--~~fFdt~~v~~~~~~~~~l~~~~~-~~G~~L~~~~------ 420 (450)
T COG0403 350 VYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVF--DHFFDTFTVRVPEEVAEALLAAAI-AGGINLRRVD------ 420 (450)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEecc--ccceeeEEEecchhHHHHHHHHHH-hcCCceeeec------
Confidence 1344678999999999999999999966 577664 2555 455554322233333333 3477665422
Q ss_pred CCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 416 NEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 416 ~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+..+=+++. .++++++.+++.+...
T Consensus 421 ~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 421 ADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred CCceEEEeecccCHHHHHHHHHHHhhh
Confidence 335666763 3689999999888653
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-06 Score=82.11 Aligned_cols=192 Identities=18% Similarity=0.160 Sum_probs=124.3
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHHHHHH-HHhcCCCCEEE
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSDISRL-QMLLGSNVTVA 162 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~al~~l-~~l~~~gd~Vl 162 (441)
..+++.++++...+..+.+. .|.-..|...-|......+ ..++ ..+.++++++.+.++.++ ..+..++..|+
T Consensus 38 ~~~~e~iea~~~~~~~~v~L----e~~l~~g~~~~R~~~~~~~--~~~~~~aea~~ivnnn~aAVll~~~al~~~~EvVi 111 (395)
T COG1921 38 LYSPEAIEAMKEAMRAPVEL----ETDLKTGKRGARLTELAEL--LCGLTGAEAAAIVNNNAAAVLLTLNALAEGKEVVV 111 (395)
T ss_pred cCCHHHHHHHHHHhccccee----eeecccchhhHHHHHHHHH--HhcccchhheeeECCcHHHHHHHHhhhccCCeEEE
Confidence 35688888999988765432 4433444444443322222 1243 378999999999999884 55555444432
Q ss_pred -----EeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC--CCCCccEEEEc-CCCCccccCCCHH
Q 013521 163 -----VQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS--TTSRTDIIFFC-SPNNPTGHAATWQ 234 (441)
Q Consensus 163 -----v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~--~~~~~~~v~i~-~p~NPtG~~~~~~ 234 (441)
++ ++.+.+.++.+..| .+++.+..... ...-|++ ..+++++++-. ++|.+.-..++
T Consensus 112 s~g~lV~-gg~~~v~d~~~~aG------------~~l~EvG~tn~-t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~-- 175 (395)
T COG1921 112 SRGELVE-GGAFRVPDIIRLAG------------AKLVEVGTTNR-THLKDYELAINENTALLLKVHSSNYGFTGMLS-- 175 (395)
T ss_pred Ecccccc-CCCCChhHHHHHcC------------CEEEEecccCc-CCHHHHHHHhccCCeeEEEEeecccccccccc--
Confidence 23 57788999999999 46666654322 1112222 25788877766 44543333456
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccc
Q 013521 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~ 305 (441)
.++++++|+++|+++|+|..-+....... ....... +-.+++.|-.|.+| |.+.|.+++.++++
T Consensus 176 -~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~----GaDLV~~SgdKllg--GPqaGii~GkKelI 240 (395)
T COG1921 176 -EEELVEIAHEKGLPVIVDLASGALVDKEPDLREALAL----GADLVSFSGDKLLG--GPQAGIIVGKKELI 240 (395)
T ss_pred -HHHHHHHHHHcCCCEEEecCCccccccccchhHHHhc----CCCEEEEecchhcC--CCccceEechHHHH
Confidence 77889999999999999999876543211 2233333 22388999999986 88899999999985
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-05 Score=73.43 Aligned_cols=328 Identities=14% Similarity=0.174 Sum_probs=175.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCC-CC---CCCCCCCcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTV-KG---YKGYGAEQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSD 147 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~-~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~a 147 (441)
.+.||+.|.- ..|+++++..++.+..+... -. .+|.+ ..+ ..+.+...+.+++.++++.+ .|++..|+..+
T Consensus 5 ~~~nFsaGPa--~lp~~vL~~a~~e~~~~~g~g~svme~SHRs-k~~-~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~ 80 (365)
T COG1932 5 RVYNFSAGPA--ALPPEVLQQAQKELLDWNGLGMSVMEISHRS-KEF-KNVLEEAEKDLRELLNIPDDYKVLFLQGGATG 80 (365)
T ss_pred CCCCCCCCcc--cCCHHHHHHHHHHHhhhccCCcceeeecccc-HHH-HHHHHHHHHHHHHHhCCCCCceEEEEcCccHH
Confidence 4678888853 35677777777766554310 01 22221 122 23333333334445677766 78877776555
Q ss_pred -HHH-HHHhcCCCCEEEEeCCCchhh-HhHHHHhccccccccccCccceeEEeec-CCCCCccCCCCC---CCCccEEEE
Q 013521 148 -ISR-LQMLLGSNVTVAVQDPSFPAY-IDTSVIVGQAGKFLKETGKYRNIVYMNC-RPENNFFPDLST---TSRTDIIFF 220 (441)
Q Consensus 148 -l~~-l~~l~~~gd~Vlv~~p~y~~~-~~~~~~~g~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~~~---~~~~~~v~i 220 (441)
.+. .+.++..+..-.+..-.|... ...++.++.+. .+..... ..+-+..+++.. .++...|++
T Consensus 81 qf~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~~~~~----------~~~~~~~~~~~~~~iP~~~~~~~~~~~ayv~~ 150 (365)
T COG1932 81 QFAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQP----------KLIDARIEEAGYGSIPDLSKWDFSDNDAYVHF 150 (365)
T ss_pred HHHHHHHhhhcccCceeEeeeehhHhHHHHHHHhcccc----------cccccceeccCccCCCChhhcccCCCccEEEE
Confidence 555 588886554313334444332 22333333210 1111110 111122334332 123444666
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
|.-..-+|+-++. ...+. .+.++|+|-...-+.. +..+..+ .++-.|..|.+|..| ++.++.
T Consensus 151 ~~NeTi~Gv~v~~--~p~~~-----~~~~~v~D~SS~ilsr---~iDvsk~------dviyagaQKnlGpaG--ltvvIv 212 (365)
T COG1932 151 CWNETISGVEVPE--LPDIG-----SDGLLVADASSAILSR---PIDVSKY------DVIYAGAQKNLGPAG--LTVVIV 212 (365)
T ss_pred ecCCcccceEccC--CCCCC-----CCceEEEecccHHhcC---CCChhHc------ceEEEehhhccCccc--eEEEEE
Confidence 6545567877762 11111 1278888876542221 3333333 256667999999888 899999
Q ss_pred eccccccCC----chhHHHHH-HHHhhhcCCCcHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013521 301 PEELRYSNG----YPVIKDFN-RIVCTCFNGASNIVQAGGLACL----SPDGFQALRTVIDYYKENAKIIVDAFQSLGLK 371 (441)
Q Consensus 301 ~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~l----~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 371 (441)
+++++.+.. +++..... .....++++++.++-......+ .++|. +.+.++-+++.+.|++.+++.++.
T Consensus 213 r~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl---~~~~~rn~~ka~~LY~~id~s~fy 289 (365)
T COG1932 213 RPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGL---EALEARNQAKAQLLYDWIDKSDFY 289 (365)
T ss_pred cHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999875431 11111111 1223345555555543332222 24444 677778888999999999887442
Q ss_pred e----eCCCCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 372 V----NGGKNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 372 ~----~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
- ....+-+.+.+++... -+..++..+. ++|+...-|+. ..+.+|+++++ +.++++.+++-|+.+
T Consensus 290 ~~~v~~~~RS~mnV~f~~~~~~ld~~fv~eae-~~gl~~lkGhr----~vgGmRasiynA~~~e~veaL~~fm~~f 360 (365)
T COG1932 290 RNLVAKANRSRMNVTFTLVDAELDKGFVAEAE-AAGLIYLKGHR----SVGGLRASIYNAVPLEDVEALTDFMDWF 360 (365)
T ss_pred ccccchhhccceeEEEEcCcHHHHHHHHHHHH-HcCCceecccc----CCCceeeeeecCCCHHHHHHHHHHHHHH
Confidence 2 1223456788888632 2344555554 45887777732 23459999865 778999988887764
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.7e-06 Score=77.16 Aligned_cols=303 Identities=15% Similarity=0.152 Sum_probs=178.8
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH---HHHHHhc-CC----CCEEEEeCCCchhhHhHHHHhcccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI---SRLQMLL-GS----NVTVAVQDPSFPAYIDTSVIVGQAGKF 184 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al---~~l~~l~-~~----gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 184 (441)
.+|..++...+.+||.+-.|.+.-.+-.-+|++.=+ .+|.... .. .+.+++++-.|..-...+...|
T Consensus 104 vqG~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G----- 178 (496)
T COG1003 104 VQGYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAG----- 178 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcC-----
Confidence 468899999999999875555555555667776533 3344443 22 3689999999988888888899
Q ss_pred ccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc
Q 013521 185 LKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT 261 (441)
Q Consensus 185 ~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~ 261 (441)
.+|+.|+.+++++.+.+ +.. .+++.+++|+||+. .|.. ++.+++|+++.+++|..+..|.+-..-..
T Consensus 179 -------~~VV~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~DGANlNA~v 248 (496)
T COG1003 179 -------FKVVVVKCDENGNVDLDDLRAKAEDNLAALMITNPST-LGVF--EEDIREICEIVHEAGGQVYYDGANLNAIV 248 (496)
T ss_pred -------ceEEEEecCCCCCccHHHHHHHhccceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEecCcchhhhh
Confidence 59999999988765443 221 47889999989865 5543 67899999999999999999998764222
Q ss_pred CCCCCcccccCCCcceeEEEecCCcccCC----ccceeEEEEeeccccccCCch-----hHHHHH-H-------HHhhhc
Q 013521 262 DPSPRSIYEIPGAREVAIEISSFSKFAGF----TGVRLGWTVVPEELRYSNGYP-----VIKDFN-R-------IVCTCF 324 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~i~i~S~SK~~~~----~G~r~G~l~~~~~~~~~~~~~-----~~~~~~-~-------~~~~~~ 324 (441)
+- ....+..-.+..+ -++|+|+. .|-..|=+.+...+... .+. ....+. . -+...+
T Consensus 249 G~-----~rPGd~G~DV~Hl-NLHKTF~iPHGGGGPG~GPvgVk~~L~pf-LP~p~~~~~~~~y~~~~~~~~s~g~~~a~ 321 (496)
T COG1003 249 GL-----ARPGDMGFDVVHL-NLHKTFCIPHGGGGPGAGPVGVKAHLAPF-LPGPVVYHDVGEYRLDYDGKKSIGVSAAP 321 (496)
T ss_pred cc-----ccccccccceEEe-ecccccccCCCCCCCCCCceehHhhcccc-CCCCcccCCCccccccCCCCccceeeccc
Confidence 21 1111111112333 37888754 34456666555444210 000 000000 0 011122
Q ss_pred CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCC-CceEEEEEcC------CCChHHHHHH
Q 013521 325 NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGK-NAPYVWVQFP------GSSSWDVFAE 396 (441)
Q Consensus 325 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~------~~~~~~~~~~ 396 (441)
.+...+... +.+.+...+.+.+++.-+.---+.+++.+.|+.. .+.+.+.. -..=+.++.. +....+++++
T Consensus 322 ~Gs~~il~~-a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKr 400 (496)
T COG1003 322 YGSASILPI-AWAYIRMMGADGLKQASEVAVLNANYIARRLKGYYPVPYTGENRVAHECILDARPLKKETGVRALDVAKR 400 (496)
T ss_pred cCcchHHHH-HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhcCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHH
Confidence 222222222 2333333444555666666666788999999874 33333211 1111334443 5677889999
Q ss_pred HHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 397 ILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 397 ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
|++- |+.-..-+ |-.--.+.+=|=- ..+.+++++.+++|.++
T Consensus 401 LlD~-GfHaPT~~-FPliV~~tLMIEPTEsEsk~eLDrf~dami~I 444 (496)
T COG1003 401 LLDY-GFHAPTMY-FPLIVAGTLMIEPTESESKEELDRFIDAMIAI 444 (496)
T ss_pred HHhc-CCCCCccc-CccccccceeecCCCCCCHHHHHHHHHHHHHH
Confidence 8865 87654433 2211233343332 23678899998888764
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.9e-05 Score=78.61 Aligned_cols=341 Identities=12% Similarity=0.097 Sum_probs=188.9
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC-----cCcHHHHHHHHHHH
Q 013521 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE-----QGNMALRTAIADKF 127 (441)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~-----~g~~~lr~~ia~~l 127 (441)
....++.+.......++.. -..-+|.|.++--.|..+.+.+.+ +. ..+..|+|. +|..+..=.....+
T Consensus 61 ~sE~e~~~~~~~~a~kN~~-~~~fiG~G~y~~~~P~vi~~~i~~---~~---~~yTaYTPYQpEisQG~Lqal~e~Qtmi 133 (954)
T PRK12566 61 LDEQAALARLRGYAEQNQV-WTSLIGMGYHGTVTPTVILRNVLE---NP---GWYTAYTPYQPEIAQGRLEALLNFQQMT 133 (954)
T ss_pred CCHHHHHHHHHHHHhcCCC-ccccccccccCCcCcHHHHHHHHh---Cc---hhhhcCCCCCchhhhHHHHHHHHHHHHH
Confidence 3344454544444444322 234567777776677766455544 21 224455542 34333322223333
Q ss_pred hhhCCCCCCcEEEcCCcHHHHHH-HHH--hcC-CCCEEEEeCCCchhhHhHHHHhcc-ccccccccCccceeEEeecCCC
Q 013521 128 YKDMGIEGDEIFISDGAQSDISR-LQM--LLG-SNVTVAVQDPSFPAYIDTSVIVGQ-AGKFLKETGKYRNIVYMNCRPE 202 (441)
Q Consensus 128 ~~~~~~~~~~I~~t~G~~~al~~-l~~--l~~-~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~v~~v~~~~~ 202 (441)
....|.+-.|--+-.|++++-.. ++. ..+ ...+|+|+.-.||.+....+.... .| ++++.-.+
T Consensus 134 ~~LtGm~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g---------~~i~~~~~--- 201 (954)
T PRK12566 134 IDLTGLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFG---------FELVVDAV--- 201 (954)
T ss_pred HHHhCchhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCC---------cEEEEcch---
Confidence 33345554455566677765553 322 222 246899999999998877765532 11 24443111
Q ss_pred CCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEe
Q 013521 203 NNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEIS 282 (441)
Q Consensus 203 ~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 282 (441)
.. .. ..++..+++.+|+. .|.+-+ +++|.++++++|.++|+ .+.- +.. .+..-++..+-+|.++
T Consensus 202 ---~~-~~-~~~~~~v~vq~P~~-~G~i~d---~~~i~~~~h~~gal~~~-~~d~-laL-----~ll~~Pge~GADI~vG 265 (954)
T PRK12566 202 ---DN-LA-AHAVFGALLQYPDT-HGEIRD---LRPLIDQLHGQQALACV-AADL-LSL-----LVLTPPGELGADVVLG 265 (954)
T ss_pred ---hh-cC-CCCEEEEEEECCCC-ceEEcc---HHHHHHHHHHcCCEEEE-EeCH-HHH-----hCCCChhhcCCcEEee
Confidence 11 11 13577888889865 888844 89999999999988663 2211 111 1111122223347677
Q ss_pred cC---CcccCCccceeEEEEeecccccc------------C--------CchhHHHHHHHHhhhcCCCcHHHHHHHHHhc
Q 013521 283 SF---SKFAGFTGVRLGWTVVPEELRYS------------N--------GYPVIKDFNRIVCTCFNGASNIVQAGGLACL 339 (441)
Q Consensus 283 S~---SK~~~~~G~r~G~l~~~~~~~~~------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 339 (441)
+- .=-+|..|--.||+.+.+++++. + .....+.+++-+..+..+++....+.+.+++
T Consensus 266 ~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y 345 (954)
T PRK12566 266 STQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFY 345 (954)
T ss_pred CCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 43 33344457779999998877522 0 0001222344444444333332222222222
Q ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE--EEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCC
Q 013521 340 -SPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY--VWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGN 416 (441)
Q Consensus 340 -~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 416 (441)
.-.+-+.+++..++...+..++.+.|.+.|+++.. ..+| +.+++ +....++..+.++ .||-++-- ++
T Consensus 346 ~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~--~~fF~~~~v~~-~~~~~~~~~~a~~-~~~n~r~~------~~ 415 (954)
T PRK12566 346 AVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLN--RHFFDTLTLEV-GGAQAAIIESAEA-ARINLRIL------GR 415 (954)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCcccc--CCccceEEEEc-cCCHHHHHHHHHH-CCCeeEEe------CC
Confidence 11344667888888888999999999998888754 3556 44444 2234556565554 58888653 24
Q ss_pred CeEEEEee--cCHHHHHHHHHHHH
Q 013521 417 EHIRVSAF--GHREYISEACRRLK 438 (441)
Q Consensus 417 ~~iRls~~--~~~~~~~~~l~~l~ 438 (441)
+.+.+|+. .+.++++.++..+.
T Consensus 416 ~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 416 GRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHhc
Confidence 57889983 47899999988873
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00017 Score=66.56 Aligned_cols=329 Identities=16% Similarity=0.147 Sum_probs=181.7
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH-H
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL-Q 152 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l-~ 152 (441)
.|||-..+.........|.+|.+--. .|.-..++..|.+++.+.+ |. +.++.|.-+-.|-+++ .
T Consensus 48 ~IDLLTDSGTgams~~qwaamm~GDE---------AYagsrs~~~L~~avkdif----Gf--q~~iPthQGRgAE~Il~~ 112 (471)
T COG3033 48 FIDLLTDSGTGAMTDKQWAAMMRGDE---------AYAGSRSYYALADAVKDIF----GF--QYTIPTHQGRGAENILIP 112 (471)
T ss_pred EEEeeccCCcccccHHHHHHHhccch---------hhcccccHHHHHHHHHHhc----Cc--eeeeeccCCccHHHHHHH
Confidence 46665555444556666766665322 4777788899999999986 54 5677777776666653 2
Q ss_pred HhcC-----CCCEEEEeCCCchhh-HhHHHHhccccccccccCccceeEEeecCCCCC------cc--CCCCC-------
Q 013521 153 MLLG-----SNVTVAVQDPSFPAY-IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENN------FF--PDLST------- 211 (441)
Q Consensus 153 ~l~~-----~gd~Vlv~~p~y~~~-~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~------~~--~~~~~------- 211 (441)
.+++ ||.+..+++..|... ....+..|. .+.-+++++..+ |. .|+++
T Consensus 113 i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~------------~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lide 180 (471)
T COG3033 113 ILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGA------------TPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDE 180 (471)
T ss_pred HHhhhccccCCccccccccceecchhHHHHhcCC------------ccccccccccccccccCCCCCccCHHHHHHHHHH
Confidence 3333 454555566666443 333333342 333333332111 11 12221
Q ss_pred --CCCccEEEEc-CCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccc-cccc---CCC----CCcccccCC--Cccee
Q 013521 212 --TSRTDIIFFC-SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA-AYIT---DPS----PRSIYEIPG--AREVA 278 (441)
Q Consensus 212 --~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~-~~~~---~~~----~~~~~~~~~--~~~~~ 278 (441)
..++..|+++ ..|.-.|+..|.+.++++.++|++|++.++.|.+-. +..+ ... ..++.++.. ..-..
T Consensus 181 vG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD 260 (471)
T COG3033 181 VGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYAD 260 (471)
T ss_pred hCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhh
Confidence 2456777776 445567899999999999999999999999997632 2211 111 234433210 00001
Q ss_pred EEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHH-----hhhcCCCcHHHHHHHHHhcCC-CcHHHHHHHHH
Q 013521 279 IEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIV-----CTCFNGASNIVQAGGLACLSP-DGFQALRTVID 352 (441)
Q Consensus 279 i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~ 352 (441)
-+.-|.-|-- +..+ -|++...++-.. .+....+... ..++.+.+.-...+.+.=|.+ -...|+..+.+
T Consensus 261 ~~~mS~KKD~-lvnm-GGfl~~~D~~~f----Dvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~ 334 (471)
T COG3033 261 GCTMSAKKDG-LVNM-GGFLCFKDDSFF----DVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVA 334 (471)
T ss_pred hheeeccccc-eecc-ccEEEecCccHH----HHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHH
Confidence 2344555532 2221 178887776410 0011111111 011222222222222222221 12244554444
Q ss_pred HHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcC----C-----CChHHHHHHHHHhcCeEEeCCCCcCC----------
Q 013521 353 YYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP----G-----SSSWDVFAEILEKTHILTIPGSGFGP---------- 413 (441)
Q Consensus 353 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~ll~~~gi~v~pg~~f~~---------- 413 (441)
..++|.+.|++.|+++..|.+|.-++++.. . ...+.++.+|-++.||-..--..|..
T Consensus 335 ----Qv~YL~~~l~~~GVpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~ 410 (471)
T COG3033 335 ----QVQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQH 410 (471)
T ss_pred ----HHHHHHHHHHhcCCeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccC
Confidence 467889999999998888889998888853 1 24567888888999998775444421
Q ss_pred -CCCCeEEEEee---cCHHHHHHHHHHHHh
Q 013521 414 -GGNEHIRVSAF---GHREYISEACRRLKN 439 (441)
Q Consensus 414 -~~~~~iRls~~---~~~~~~~~~l~~l~~ 439 (441)
....-+|+++- -+.+.++..++.+++
T Consensus 411 ~~~~elvRltipRrtYt~~HmD~V~~a~~~ 440 (471)
T COG3033 411 PPPAELVRLTIPRRTYTQTHMDFVIEAFKA 440 (471)
T ss_pred CCchheeeEeccccccchhHHHHHHHHHHH
Confidence 11256999972 155666665555544
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.2e-07 Score=84.42 Aligned_cols=252 Identities=17% Similarity=0.190 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHH-HHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEE
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTA-IADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAV 163 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~-ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv 163 (441)
+.++++.+++.+....+.++ .|.-..|...-|.. +.+.+..- ..+|.-+++|+..+|+.++..-+.+|.+|++
T Consensus 17 ~l~~~a~~a~~~~a~~Y~nL----E~dl~~G~Rg~R~~~v~~ll~~l--tgAeaA~VvNnnaAAv~L~l~~la~~~EvIv 90 (367)
T PF03841_consen 17 PLSEEAIEAVAEVASGYSNL----EYDLETGKRGSRYAHVEELLCEL--TGAEAALVVNNNAAAVLLALNTLAKGKEVIV 90 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc----ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence 45678888888877665432 23212222222221 11111111 2457788888888888885444456777776
Q ss_pred eCC---Cchh---hHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCcc--ccCCCH
Q 013521 164 QDP---SFPA---YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPT--GHAATW 233 (441)
Q Consensus 164 ~~p---~y~~---~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPt--G~~~~~ 233 (441)
..- .+.+ +.++.+..| .+++.|..... ....|.+. .+++.+++..+++|-. |-.-+.
T Consensus 91 sRGelVeiGgsFRip~vm~~sG------------a~lvEVGttN~-t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~ 157 (367)
T PF03841_consen 91 SRGELVEIGGSFRIPDVMRQSG------------ARLVEVGTTNR-THLSDYEKAITENTAALLKVHTSNFRIQGFTGEV 157 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc------------ccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 542 2332 334445555 35555554322 22334443 5789998888887753 322221
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccc------cCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc
Q 013521 234 QQLKKLVEFAKANGSIIVYDSAYAAYI------TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS 307 (441)
Q Consensus 234 ~~~~~i~~~a~~~~~~ii~De~~~~~~------~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~ 307 (441)
.+++++++|++|++++|+|-.-+.+. ... .+++...-. .+-.+++.|-.|.+| |.+.|.+++.++++
T Consensus 158 -~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~-Ep~v~~~~~-~GaDlV~fSGdKlLG--GPQaGiI~Gkk~lI-- 230 (367)
T PF03841_consen 158 -SLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPD-EPTVQEYLA-AGADLVTFSGDKLLG--GPQAGIIVGKKELI-- 230 (367)
T ss_dssp ----HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCC-CT-SEEEEETTSSSS--S-S-EEEEEEHHHH--
T ss_pred -cHHHHHHHHhhcCCcEEEECCCCCCcCcccccCcc-ccHHHHHhh-cCCCEEEEECCCcCC--CCCeEEEEeCHHHH--
Confidence 38899999999999999997663221 111 123333211 233488999999996 67799999999984
Q ss_pred CCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcC---CCc--------HHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 308 NGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS---PDG--------FQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~--------~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
++++.-.-....-+..+...+..+.|+ +.. +..+..-.+.++++.+.+.+.|...
T Consensus 231 ------~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 231 ------EKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp ------HHHHHHHHTTT-B--HHHHHHHHHHHHH--------------------------------------
T ss_pred ------HHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 444432222222233344333333332 211 1234455566666677777766654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00026 Score=72.37 Aligned_cols=267 Identities=13% Similarity=0.036 Sum_probs=149.3
Q ss_pred CCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH-HH--HHhcC----------------------------
Q 013521 108 KGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS-RL--QMLLG---------------------------- 156 (441)
Q Consensus 108 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~-~l--~~l~~---------------------------- 156 (441)
..|...++...+.+.+.+|+.+.+|.+...=++|+|+|.+.. .+ .+-.+
T Consensus 113 ~~~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~ 192 (608)
T TIGR03811 113 VAYESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTK 192 (608)
T ss_pred CccccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccc
Confidence 345456688899999999998877766555557888887644 23 11110
Q ss_pred ----------------------CC------CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC
Q 013521 157 ----------------------SN------VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD 208 (441)
Q Consensus 157 ----------------------~g------d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~ 208 (441)
+| -.++++.-.|.++...+..+|.-- -.++.||++.+...+.+
T Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~---------~~vv~VpvD~~~rmd~~ 263 (608)
T TIGR03811 193 EIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGL---------DQVIPVPVDSNYRMDIN 263 (608)
T ss_pred cccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCc---------ccEEEeecCCCCcCCHH
Confidence 00 057788888999999999999310 26889999765443332
Q ss_pred -CCC-------CCCc-cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCc--EEEEcccccccc---c-CCC--CCcc---
Q 013521 209 -LST-------TSRT-DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGS--IIVYDSAYAAYI---T-DPS--PRSI--- 268 (441)
Q Consensus 209 -~~~-------~~~~-~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~--~ii~De~~~~~~---~-~~~--~~~~--- 268 (441)
+++ ...+ -+|+-+-....+|.+=|.+++.+|++-++++|+ ++.+|.+|+.+. + ++. +.+.
T Consensus 264 ~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~ 343 (608)
T TIGR03811 264 ELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDL 343 (608)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchh
Confidence 111 1222 344445668889999885555555555578897 699999999753 1 100 0000
Q ss_pred ----------------------cccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhh----
Q 013521 269 ----------------------YEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCT---- 322 (441)
Q Consensus 269 ----------------------~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~---- 322 (441)
..+.+...-.-+.-.++|.+. ....+|.++.++..+.... .....+......
T Consensus 344 ~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~-~~~a~Yl~~~~~~~p~ 421 (608)
T TIGR03811 344 QEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVI-SYFATYVFEKGADIPA 421 (608)
T ss_pred hcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHH-hcCcchhccccccCcc
Confidence 011122222234556899985 7788998888776431100 000000000000
Q ss_pred ----hcCCCcHHHH--HHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHHhC-------CCee--eCCCCceEEEEEc
Q 013521 323 ----CFNGASNIVQ--AGGLACLSPD--GFQALRTVIDYYKENAKIIVDAFQSL-------GLKV--NGGKNAPYVWVQF 385 (441)
Q Consensus 323 ----~~~~~~~~~~--~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~--~~~~~~~~~~~~~ 385 (441)
.....+.+.. .++-..++-. +.+.+.++.++.-+.++++.+.|.+. .+++ ..++.-+.+.+.+
T Consensus 422 ~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~ 501 (608)
T TIGR03811 422 LLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVF 501 (608)
T ss_pred cccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEE
Confidence 0111222221 1111122111 34556777788888888888888773 2443 3344555566665
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.6e-05 Score=72.11 Aligned_cols=295 Identities=12% Similarity=0.093 Sum_probs=168.6
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHHHHH-HHH---hc-C-CC-
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSDISR-LQM---LL-G-SN- 158 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~al~~-l~~---l~-~-~g- 158 (441)
++...+-+.+++..++ .-...-| ++..++..+.-.++...++.+++ .=..|.|+++++.. -.. .. . .|
T Consensus 93 ~~~~~~l~~~~~~k~N-~l~~d~f---p~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I 168 (491)
T KOG1383|consen 93 EPELDKLIMEAYNKFN-PLHPDEF---PVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGI 168 (491)
T ss_pred CcchhhHHHHHHhhcC-ccCcccc---chhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCC
Confidence 3444555556555431 1111122 35666777777776665555433 33478888888432 111 11 1 12
Q ss_pred --CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCCccccCC
Q 013521 159 --VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAA 231 (441)
Q Consensus 159 --d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~ 231 (441)
..++++.-.+..+...++.++ .++..+++++ +.+..|+.+ ..++.+++.+-|+.|+|..
T Consensus 169 ~~p~iv~~~~v~~a~eK~a~yf~------------v~l~~V~~~~-~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~- 234 (491)
T KOG1383|consen 169 DKPNIVTPQNVHAAFEKAARYFE------------VELREVPLDE-GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEI- 234 (491)
T ss_pred CCccccchHHHHHHHHHHHhhEE------------EEEEeeeccc-cceEecHHHHHHHhccceEEEEEEcCCCCccch-
Confidence 357777777777777777777 6899999987 577777654 4788998888999999977
Q ss_pred CHHHHHHHHHHHHH-cCcEEEEcccccccccC-C-CCCcccccCCCcceeEEEe-cCCcccCCccceeEEEEeecccccc
Q 013521 232 TWQQLKKLVEFAKA-NGSIIVYDSAYAAYITD-P-SPRSIYEIPGAREVAIEIS-SFSKFAGFTGVRLGWTVVPEELRYS 307 (441)
Q Consensus 232 ~~~~~~~i~~~a~~-~~~~ii~De~~~~~~~~-~-~~~~~~~~~~~~~~~i~i~-S~SK~~~~~G~r~G~l~~~~~~~~~ 307 (441)
+.+++|.++..+ +++.+.+|.+-+.|... . .+..-+.+. .+. |-.++ +-+| +|+.--.+||++-..+-+..
T Consensus 235 --e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr-~p~-V~Sisa~~HK-YGl~~~G~~~vl~r~k~~~~ 309 (491)
T KOG1383|consen 235 --EDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFR-VPG-VTSISADGHK-YGLAPAGSSWVLYRNKELLP 309 (491)
T ss_pred --hhHHHHHHHHHHHhCCceeecccCccccccccccCccccccC-CCC-ceeEeeccce-eeeeecCcEEEEEccccccc
Confidence 458888888888 99999999999887653 1 111122221 112 22222 2334 23333348888865544311
Q ss_pred -CCchhHHHHHHHHhhhcCCCcHHH-HH-HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEE
Q 013521 308 -NGYPVIKDFNRIVCTCFNGASNIV-QA-GGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWV 383 (441)
Q Consensus 308 -~~~~~~~~~~~~~~~~~~~~~~~~-~~-a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 383 (441)
+..-..+.........+...|.++ |. +.-+.+-..+.+...+..+.+.+....+.+.+++. ++.....+.-.|+.+
T Consensus 310 ~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~ 389 (491)
T KOG1383|consen 310 HQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILF 389 (491)
T ss_pred ceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEc
Confidence 110011111222222221122221 11 11222223455555777788889999999999997 788877655555555
Q ss_pred EcCCCChHHHHHHHHHhcCeEE
Q 013521 384 QFPGSSSWDVFAEILEKTHILT 405 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v 405 (441)
.-...+.-++... |++.|=.+
T Consensus 390 ~s~~~~i~elsd~-l~~~GW~l 410 (491)
T KOG1383|consen 390 GSNDVNIFELSDL-LRKKGWIL 410 (491)
T ss_pred cCCccchhhhhHH-HHhcCcCc
Confidence 4444444455444 44557554
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0017 Score=58.64 Aligned_cols=199 Identities=12% Similarity=0.111 Sum_probs=121.1
Q ss_pred CCCCccccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc-cCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 222 SPNNPTGHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE-IPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+-+.=-|+++| ....+++++..+.+|-+.|.||+.-.|..-+......+ ++-.|| |-++.|-+| .|..++.++
T Consensus 217 slQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPD----IVtmgKpmG-NGhPVa~Va 291 (452)
T KOG1403|consen 217 SLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPD----IVTMGKPMG-NGHPVAAVA 291 (452)
T ss_pred HHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccc----hheecccCC-CCCeeeEEe
Confidence 44555677664 55789999999999999999999987765443221111 221344 446899998 999999999
Q ss_pred eeccccccCCchhHHHHHH--HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeeCC
Q 013521 300 VPEELRYSNGYPVIKDFNR--IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVNGG 375 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~ 375 (441)
+.+++ .+.+.. +.-+...+.++.+.+++++.++.-.. +++.++-++--.+|...|++. ..++.+.
T Consensus 292 ttkeI--------A~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~---E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGD 360 (452)
T KOG1403|consen 292 TTKEI--------AQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCED---ENLQEHAQQVGEKLEVLLRRLKQKHECIGD 360 (452)
T ss_pred ccHHH--------HHHhccccceehhccCCCchhHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhhhccceec
Confidence 88877 344432 22233445778888888887762212 444455555556666666654 2333332
Q ss_pred C--CceEEEEEcCC---------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhh
Q 013521 376 K--NAPYVWVQFPG---------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNF 440 (441)
Q Consensus 376 ~--~~~~~~~~~~~---------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~ 440 (441)
- -|.|+=+++-. ......+.++.+.++|+++.-. +..+-+.|- ++-++++.++.+..|.++
T Consensus 361 vRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDG----Ph~NilKiKPPmCFneena~e~v~~ld~i 434 (452)
T KOG1403|consen 361 VRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADG----PHRNILKIKPPMCFNEENADEFVLGLDEI 434 (452)
T ss_pred cccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCC----CCCceeecCCCcccChhhHHHHHHHHHHH
Confidence 2 36677677631 1223456777777889987532 234445544 233566666666655544
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00025 Score=65.33 Aligned_cols=197 Identities=14% Similarity=0.141 Sum_probs=113.2
Q ss_pred ccEEEEcCC-CCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCcccccCCCcceeEEEecCCcccCC
Q 013521 215 TDIIFFCSP-NNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 215 ~~~v~i~~p-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
+-+-+|..| +.--| .-.|++..+++.+++++|++.+|+||+.......+. .+--+.++..+| +-+|||-|-
T Consensus 271 pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD----~vTFSKK~q- 345 (484)
T KOG1405|consen 271 PVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPD----VVTFSKKFQ- 345 (484)
T ss_pred CeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCcc----ceehhhhhh-
Confidence 444455677 66566 346999999999999999999999999875444432 122233433334 447999884
Q ss_pred ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIV-QAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
.| ||..- +++.. -+.++.+.+.+.. ++... ...+...+++ +.+.+..+.--+.|...|.++.
T Consensus 346 ~g---Gffh~-~~frp------n~pYrifNTWmGd-P~k~lll~~vv~~I~~------~~Ll~n~~~vG~~l~~gL~~Lq 408 (484)
T KOG1405|consen 346 TG---GFFHD-EEFRP------NEPYRIFNTWMGD-PSKNLLLEEVVQEIKR------EDLLNNVAHVGKALLKGLLELQ 408 (484)
T ss_pred cC---ccccC-cccCC------CchHHHhhhhcCC-hHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 66 66543 33321 1233333332222 22222 2223333332 4445555556677777776651
Q ss_pred ------CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhh
Q 013521 370 ------LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNF 440 (441)
Q Consensus 370 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~ 440 (441)
+.-.. ..|.|+.++++...-.+.+...++.+|+.+- .-+...||+- +.-.+...+-.++++.++
T Consensus 409 ~~~p~~~~~~R-GrGTF~a~d~ps~~~Rdk~i~~~~~nGv~~G------GCg~~siRfRPsLvf~~~Ha~i~l~~~~k~ 480 (484)
T KOG1405|consen 409 AKYPGKINNLR-GRGTFIAWDCPSGSIRDKLILIARLNGVNLG------GCGDKSIRFRPSLVFRKHHADIFLDIFDKI 480 (484)
T ss_pred HhCchhhhccc-ccceEEEEeCCChHHHHHHHHHHHHcCceec------ccccceeeeccceeehhhhHHHHHHHHHHH
Confidence 22222 2688999999855555666666777788762 2245567765 322455555566666554
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0017 Score=61.74 Aligned_cols=284 Identities=11% Similarity=0.027 Sum_probs=137.6
Q ss_pred CCCC-CCcEEEcCCcHHH-HHH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCc
Q 013521 131 MGIE-GDEIFISDGAQSD-ISR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF 205 (441)
Q Consensus 131 ~~~~-~~~I~~t~G~~~a-l~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~ 205 (441)
.|+. ....++++.+|.- +.+ +.++- ..++.|+.+.-.+-+-..++..+| .+++.|+...+++.
T Consensus 69 ~G~~~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AG------------l~~~vV~~~~~~d~ 136 (389)
T PF05889_consen 69 AGLRSVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAG------------LEPVVVENVLEGDE 136 (389)
T ss_dssp TTHTTHCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-------------EEEEE-EEEETTE
T ss_pred cCCccccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcC------------CeEEEeeccCCCCe
Confidence 3543 4567888888743 223 23332 356888888776655556666777 47777765333221
Q ss_pred c-CCCC-------C-CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 206 F-PDLS-------T-TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 206 ~-~~~~-------~-~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
. .+++ + .+...+.++++++---|.. .+++++|+++|++||+..|+..+|+- .....-..+........
T Consensus 137 l~td~~~ie~~i~~~G~~~iLcvltttscfapr~--~D~i~~IakiC~~~~IPhlvNnAYgv-Q~~~~~~~i~~a~~~GR 213 (389)
T PF05889_consen 137 LITDLEAIEAKIEELGADNILCVLTTTSCFAPRL--PDDIEEIAKICKEYDIPHLVNNAYGV-QSSKCMHLIQQAWRVGR 213 (389)
T ss_dssp EEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTT-T-HHHHHHHHHHHHHST
T ss_pred eeccHHHHHHHHHHhCCCCeEEEEEecCccCCCC--CccHHHHHHHHHHcCCceEEccchhh-hHHHHHHHHHHHHhcCC
Confidence 1 1111 1 2445666666552222222 34699999999999999999999983 10000000000000012
Q ss_pred eeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013521 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE 356 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 356 (441)
..+.+.|.-|.| +-+..-+.+.++++.. +..+........ ...+.......++. .|-...........+
T Consensus 214 vda~vqS~dkNF-~VPvGgai~As~~~~~-------i~~vs~~YpGRa--s~sp~ld~~itLl~-LG~~g~~~ll~~r~~ 282 (389)
T PF05889_consen 214 VDAFVQSTDKNF-MVPVGGAIMASFDPSG-------ILAVSKEYPGRA--SASPSLDLFITLLS-LGCTGYGALLKERKA 282 (389)
T ss_dssp CSEEEEEHHHHH-CEESSHEEEEESSHHH-------HHHHHHTSHSHB--TSHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cceeeeecCCCE-EecCCCcEEEecCHHH-------HHHHHHHhhhhh--hcccchHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 237899999988 5665555666655432 333333222222 22233333334443 222222333333344
Q ss_pred HHHHHHHHHH----hCCCeeeC-CCCceEEEEEcCCC-----Ch-HHHHHHHHHhcCeE----EeCCCCcC-----CCCC
Q 013521 357 NAKIIVDAFQ----SLGLKVNG-GKNAPYVWVQFPGS-----SS-WDVFAEILEKTHIL----TIPGSGFG-----PGGN 416 (441)
Q Consensus 357 ~~~~l~~~L~----~~g~~~~~-~~~~~~~~~~~~~~-----~~-~~~~~~ll~~~gi~----v~pg~~f~-----~~~~ 416 (441)
...++.+.|+ +.+-.+.. |.+-..+.+.++.. .+ ..+..+|..+ ||. |.|+..+. .-..
T Consensus 283 ~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R-~VsG~RvV~~~~~~~tsh~~~yp~ 361 (389)
T PF05889_consen 283 SFPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKR-GVSGIRVVTPGGKKQTSHSSNYPC 361 (389)
T ss_dssp HHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHT-TEESSEEEETSSCEEETTSS--SS
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhC-CcccceeeccCCCcccccCCCCch
Confidence 4444444444 33544322 23444455565521 12 3444555544 664 44443331 1113
Q ss_pred CeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 417 EHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 417 ~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.++-++ ++.+++|++..+++|.+++
T Consensus 362 ~Ylt~AsaiG~~~eevd~~v~rL~k~i 388 (389)
T PF05889_consen 362 PYLTAASAIGMTREEVDYFVKRLDKII 388 (389)
T ss_dssp SEEEEEE-TT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 678774 3558999999999999864
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.007 Score=54.98 Aligned_cols=335 Identities=13% Similarity=0.137 Sum_probs=178.8
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCC---CCCCCCCC-cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK---GYKGYGAE-QGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~---~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
++++|.|.-+..++ .|......+.+.+.....-. ...+--|+ .+......-++.. .|...++|.+.|.-+-
T Consensus 65 d~~~iYlcGNSLGL-mPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~i----VGA~e~EvavmNsLTv 139 (465)
T KOG3846|consen 65 DKPVIYLCGNSLGL-MPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPI----VGAQENEVAVMNSLTV 139 (465)
T ss_pred CCCeEEEecccccc-CchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhh----ccCCchhhhhHhhhhh
Confidence 45678887666544 45566666666655443111 11111121 2334444444444 5888999999999999
Q ss_pred HHHH-HHHhcCCC---CEEEEeCCCchhh----HhHHHHhccccccccccCccceeEEeecCCCCC-c-cCC----CCC-
Q 013521 147 DISR-LQMLLGSN---VTVAVQDPSFPAY----IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENN-F-FPD----LST- 211 (441)
Q Consensus 147 al~~-l~~l~~~g---d~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~-~-~~~----~~~- 211 (441)
.+.. +..+.+|- -+|+++.-.||+= ...++.-|... . -..+.+...+.+. + ..| +++
T Consensus 140 Nlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~----e----~sm~~iePREGEetlRteDILd~IEkn 211 (465)
T KOG3846|consen 140 NLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISP----E----NSMIQIEPREGEETLRTEDILDTIEKN 211 (465)
T ss_pred HHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCCh----H----HheEEecccccccchhHHHHHHHHHhc
Confidence 9987 57777775 3799998888773 33344444321 1 1233333332111 1 111 122
Q ss_pred CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 212 TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 212 ~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
.....+|+++-.|.-||+.++ +.+|...-+..|.+|=.|-+|.. +..|..+- .++..+.+..--|-++..
T Consensus 212 gDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHAv---gNVpL~LH----dWgVDFACWCSYKYlnaG 281 (465)
T KOG3846|consen 212 GDEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHAV---GNVPLQLH----DWGVDFACWCSYKYLNAG 281 (465)
T ss_pred CCeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhhh---cCCceEEe----ecCCceEEEeeecccccC
Confidence 244566666677999999999 77887555567888889988762 22233222 245668888888876532
Q ss_pred cceeEEEEeeccccccCCchhHHHHHH-----H------------HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNR-----I------------VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYY 354 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~-----~------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 354 (441)
.=.||-+.+.++......+++...|.. + ......+++.+...+..+.|+- + -+...+.+
T Consensus 282 aGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~--F--~q~~~~~l 357 (465)
T KOG3846|consen 282 AGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLEL--F--AQFNINEL 357 (465)
T ss_pred CCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHH--H--HHhhHHHH
Confidence 223665566555542222221111110 0 0011122333433333333321 1 12223444
Q ss_pred HHHHHHHHHHHHh----C-CC-----------eeeCC----CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCC
Q 013521 355 KENAKIIVDAFQS----L-GL-----------KVNGG----KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG 414 (441)
Q Consensus 355 ~~~~~~l~~~L~~----~-g~-----------~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 414 (441)
+++.-++...|+. . |. ....| +.|..+.+.+.. .....+.+|-+ +|+.+- ..
T Consensus 358 RkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fss-p~~~vfqeL~k-rGv~~D------kR 429 (465)
T KOG3846|consen 358 RKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSS-PTPKVFQELHK-RGVIGD------KR 429 (465)
T ss_pred hhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCC-CchHHHHHHHH-cCeecc------cc
Confidence 4444333333322 1 21 12222 346666666653 23466677554 598762 33
Q ss_pred CCCeEEEE---eecCHHHHHHHHHHHHhh
Q 013521 415 GNEHIRVS---AFGHREYISEACRRLKNF 440 (441)
Q Consensus 415 ~~~~iRls---~~~~~~~~~~~l~~l~~~ 440 (441)
.++.||++ ++++-.++-.++..|.++
T Consensus 430 ~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~ 458 (465)
T KOG3846|consen 430 RPNVIRVAPVPLYNTFSDVYIFVNALNEA 458 (465)
T ss_pred CCCceEeecchhhccHHHHHHHHHHHHHH
Confidence 57889999 477778888777777664
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0057 Score=58.06 Aligned_cols=287 Identities=13% Similarity=0.168 Sum_probs=153.2
Q ss_pred hCCCCCCcEEEcCCcHHHHHHHH-H-h-cCCC----------CEEE-EeCCCchhhHhHHHHhccccccccccCccceeE
Q 013521 130 DMGIEGDEIFISDGAQSDISRLQ-M-L-LGSN----------VTVA-VQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIV 195 (441)
Q Consensus 130 ~~~~~~~~I~~t~G~~~al~~l~-~-l-~~~g----------d~Vl-v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~ 195 (441)
++....|.|+--.|+.+.+..+. + . .-|+ +-|+ ..+-+|.++...++.+|. |. -.++
T Consensus 155 Gw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~-gt--------d~c~ 225 (510)
T KOG0629|consen 155 GWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGL-GT--------DHCI 225 (510)
T ss_pred CCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhcc-CC--------ceeE
Confidence 44434467776677777776532 1 1 1122 3344 466688888899988883 11 3788
Q ss_pred EeecCCCCCccCC-CCC-----CC--CccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCC
Q 013521 196 YMNCRPENNFFPD-LST-----TS--RTDIIFFCSP-NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSP 265 (441)
Q Consensus 196 ~v~~~~~~~~~~~-~~~-----~~--~~~~v~i~~p-~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~~ 265 (441)
.|+.+..+...++ +++ .. .+-+++=++. ..-.|+.=| +..|+++|++|++|+.+|.+|+. +......
T Consensus 226 ~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd---L~~iadiC~k~~lWmHvDAAwGGglLmS~k~ 302 (510)
T KOG0629|consen 226 KVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD---LNGIADICEKHKLWMHVDAAWGGGLLMSRKH 302 (510)
T ss_pred EecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc---HHHHHHHHHhcCEEEEeecccccccccChhh
Confidence 8888876655443 432 11 2233332233 445576655 88999999999999999999986 2222222
Q ss_pred CcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHh-----------hhcCCCcHHHHHH
Q 013521 266 RSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVC-----------TCFNGASNIVQAG 334 (441)
Q Consensus 266 ~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~a 334 (441)
... +.+...---+-.+.+|..| +.+.++......+-+ ..+...... .+..+..-..|..
T Consensus 303 R~k--l~Giera~SvtwnpHK~~g-aplqCsa~l~r~~gl-------l~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCG 372 (510)
T KOG0629|consen 303 RHK--LTGIERANSVTWNPHKLMG-APLQCSAFLTREEGL-------LQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCG 372 (510)
T ss_pred Hhh--ccCccccCceeecHHHhhc-CcchhhHHHHHHHHH-------HHhhcccchhhhhccCceeecccccccchhhcC
Confidence 222 2111111134556789998 888888776655442 111100000 0001111112211
Q ss_pred -----H-H-HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCee-eC--CCCceEEEEEcCC----C-ChH-------
Q 013521 335 -----G-L-ACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKV-NG--GKNAPYVWVQFPG----S-SSW------- 391 (441)
Q Consensus 335 -----~-~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~--~~~~~~~~~~~~~----~-~~~------- 391 (441)
. . -.++..++...++..+++-+.++++.+.|++. +... .. |+-.++.+..+|. . .+.
T Consensus 373 Rh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~ 452 (510)
T KOG0629|consen 373 RHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLV 452 (510)
T ss_pred ccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHH
Confidence 0 1 12234556667888899999999999999987 4333 22 2212222222221 1 111
Q ss_pred ----HHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec---CHHHHHHHHHHHHhh
Q 013521 392 ----DVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG---HREYISEACRRLKNF 440 (441)
Q Consensus 392 ----~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~---~~~~~~~~l~~l~~~ 440 (441)
..-..++++ |-.... ..--...++++|+.+.+ +.++++-+++.|.++
T Consensus 453 kVaPkIK~~Mm~~-Gt~Mi~-YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 453 KVAPKIKERMMKK-GTTMIG-YQPLGDKPNFFRMVISNPALTEADLDFLLDEIERL 506 (510)
T ss_pred hhCcHHHHHHHhc-cceeeE-ecccccccchhheecccchhhhhhHHHHHHHHHHh
Confidence 122333333 543321 11112246899998744 567888887777653
|
|
| >COG1725 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=97.52 E-value=2.7e-05 Score=61.59 Aligned_cols=33 Identities=12% Similarity=-0.053 Sum_probs=29.6
Q ss_pred CCCCCCCCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 7 HPKCSTTPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 7 ~~~~~~~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+.+|+ .+||.|||.+|+.+|+ ++.|.|+||+..
T Consensus 44 ~~~VN----pnTv~raY~eLE~eG~i~t~rg~G~fV~~~ 78 (125)
T COG1725 44 DLGVN----PNTVQRAYQELEREGIVETKRGKGTFVTED 78 (125)
T ss_pred HhCCC----HHHHHHHHHHHHHCCCEEEecCeeEEEcCC
Confidence 45666 9999999999999999 999999999853
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.026 Score=56.52 Aligned_cols=317 Identities=17% Similarity=0.234 Sum_probs=159.4
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcC--cHHHHHHHHHHH---hhhCCCCCCcEEEc-CCcHHHHHH
Q 013521 77 LGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQG--NMALRTAIADKF---YKDMGIEGDEIFIS-DGAQSDISR 150 (441)
Q Consensus 77 l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g--~~~lr~~ia~~l---~~~~~~~~~~I~~t-~G~~~al~~ 150 (441)
.+.|-++.-.|+.+.+-+-+ + ...+.+|+|.+- .+.--|.+-.|- ....|.+-.|--+. -|+.+|-..
T Consensus 123 IGmGYyn~~vP~~I~RNile---n---p~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaEAm 196 (1001)
T KOG2040|consen 123 IGMGYYNTHVPAVILRNILE---N---PGWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAAEAM 196 (1001)
T ss_pred hccccccccCcHHHHHHhhh---C---CcceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHHHHH
Confidence 34555555567765544433 2 245566766321 111122222221 12234443333333 344433333
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCcccc
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~ 229 (441)
+..-...+.+.++...+|+.....++.... +. -++++..+... .+. ..+++..+++..|.. -|.
T Consensus 197 ~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~-~~-------~i~v~~~~~~~-----~~~-s~~~v~gvlvQYP~t-~G~ 261 (1001)
T KOG2040|consen 197 ALCNRINKRKKFVVDSNCHPQTLSVVKTRAK-GF-------GIKVVVSDIKE-----ADY-SSKDVSGVLVQYPDT-EGS 261 (1001)
T ss_pred HHHHhhcccceEEecCCCCcchhhhhhcccc-cc-------ceeEEecCHHH-----hhc-cccceeEEEEEcCCC-CCc
Confidence 222345666799999999987776654321 10 01222221110 111 124577777767654 688
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcc---cCCccceeEEEEeeccccc
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKF---AGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~---~~~~G~r~G~l~~~~~~~~ 306 (441)
+.+ ..++++.+++.+.++++--- +. ...+..-++..+-.|.+||-..+ +|..|.-.||+.+.+++.+
T Consensus 262 i~d---~~el~~~a~~~~s~vv~atD---LL----aLtiLrpPgefGaDIavGSsQRFGVPlGYGGPHAaFfAv~~~l~R 331 (1001)
T KOG2040|consen 262 VLD---FDELVELAHANGSLVVMATD---LL----ALTILRPPGEFGADIAVGSSQRFGVPLGYGGPHAAFFAVSESLVR 331 (1001)
T ss_pred ccC---HHHHHHHhhccCceEEEeeh---hh----HHHccCChhhcCceeeeccccccCccccCCCchHHHHHHHHHHHh
Confidence 888 77888888898887765321 11 11222222233445888875432 2333444555555555431
Q ss_pred c-------------CCchhH-------HHHHHHHhhhcCCCcHHH-HHHHHHhcC-----CCcHHHHHHHHHHHHHHHHH
Q 013521 307 S-------------NGYPVI-------KDFNRIVCTCFNGASNIV-QAGGLACLS-----PDGFQALRTVIDYYKENAKI 360 (441)
Q Consensus 307 ~-------------~~~~~~-------~~~~~~~~~~~~~~~~~~-~~a~~~~l~-----~~~~~~~~~~~~~~~~~~~~ 360 (441)
. .+..++ +.+++-+. +|.+. ..|.++-+. -.+-..++.+..+.......
T Consensus 332 ~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKA-----TSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~ 406 (1001)
T KOG2040|consen 332 MMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKA-----TSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLI 406 (1001)
T ss_pred hCCCceEeeeecccccHHHHHHHHHHHHHhhhhcc-----chhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHH
Confidence 1 000000 01111111 22221 111111111 02234567777777777888
Q ss_pred HHHHHHhCCCeeeCCCCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHHHHH
Q 013521 361 IVDAFQSLGLKVNGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEACRRL 437 (441)
Q Consensus 361 l~~~L~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l~~l 437 (441)
|...|+..|-++.. ..+|-.+++. +...+++..+.+++ +|-++-- .++.|-+++.. +.++++.++..+
T Consensus 407 l~~~l~~aghel~~--k~fFDTLkI~~~~s~~~~l~rA~~~-~iNlr~~------ed~tigvslDETv~~~DvddLl~vf 477 (1001)
T KOG2040|consen 407 LAEGLKNAGHELQH--KPFFDTLKIRCGCSAEEVLDRAAKR-QINLRLV------EDGTIGVSLDETVTEKDVDDLLWVF 477 (1001)
T ss_pred HHHHHhhcchhhcc--ccccceEEEEecCcHHHHHHHHHhh-cCceEEe------ecCceEEeecccccHHHHHHHHHHH
Confidence 88899887766543 3467555554 33566777776665 6765432 35668888743 678899888776
Q ss_pred H
Q 013521 438 K 438 (441)
Q Consensus 438 ~ 438 (441)
.
T Consensus 478 ~ 478 (1001)
T KOG2040|consen 478 N 478 (1001)
T ss_pred c
Confidence 4
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.14 Score=46.33 Aligned_cols=324 Identities=15% Similarity=0.234 Sum_probs=166.3
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCC-----CCCCCCcCcHHHHHHHHHHHhhhCCCCCC-cEEE-cCCc
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGY-----KGYGAEQGNMALRTAIADKFYKDMGIEGD-EIFI-SDGA 144 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~-----~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~I~~-t~G~ 144 (441)
..++||+.|.- ..|+.++..+++-+-++.. .++ .+. +.....+.+.--..+++.++++.+ .|++ -.|+
T Consensus 6 ~~vvnFaaGPA--klp~~VL~e~qkdl~n~~g-~GisV~EmSHR--sk~f~kii~~tes~lreLlniPdn~~vlf~QGGG 80 (370)
T KOG2790|consen 6 ERVVNFAAGPA--KLPESVLLEAQKDLLNFNG-SGISVMEMSHR--SKDFAKIINDTESLLRELLNIPDNYKVLFLQGGG 80 (370)
T ss_pred cceeecCCCcc--cCCHHHHHHHHHHhhccCC-CcceEEEeccc--chhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCC
Confidence 35899988853 3567777777776666542 111 122 223333433333334444466544 5554 4445
Q ss_pred HHHHHH-HHHhc--CCC---CEEEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCC-CccCC---CCCC
Q 013521 145 QSDISR-LQMLL--GSN---VTVAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPD---LSTT 212 (441)
Q Consensus 145 ~~al~~-l~~l~--~~g---d~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~---~~~~ 212 (441)
+..+.. ...++ +.| |.|+.- +|.. +.+ ++.+|. ...+..+..... +-.+| ++..
T Consensus 81 t~qFaAv~lNL~glK~g~~AdYiVTG--sWS~KA~~E-Akk~~~-----------~~~V~~~~k~y~ygkvPd~~~w~~~ 146 (370)
T KOG2790|consen 81 TGQFAAVPLNLIGLKHGRCADYVVTG--SWSAKAAEE-AKKYGT-----------PNIVIPKLKSYTYGKVPDPSTWELN 146 (370)
T ss_pred cccccccchhhhccccCCccceEEec--cccHHHHHH-HHhhCC-----------ceEEeccccccccCcCCChhhcccC
Confidence 554544 34444 455 555543 3432 222 222332 122222222211 11122 2334
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
++.+.+|+|.-..--|+-++. +- +-.-++.++|+|-... |... |..+..+ -++..+..|.+|.+|
T Consensus 147 ~da~yvyyCaNETVHGVEf~~-----~P-~~~~~~~vlVaDmSSn-flSr--pvDvsk~------gvi~aGAQKN~G~aG 211 (370)
T KOG2790|consen 147 PDASYVYYCANETVHGVEFDF-----IP-VNDPKGAVLVADMSSN-FLSR--PVDVSKF------GVIFAGAQKNVGPAG 211 (370)
T ss_pred CCccEEEEecCceeeceecCC-----CC-CCCCCCceEEEecccc-hhcC--Cccchhc------ceEEeccccccCccc
Confidence 677788888433334544431 11 1124577888885433 4322 3322222 266778999999888
Q ss_pred ceeEEEEeeccccccCC---chhHHHHHH--HHhhhcCCCcHHH----HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 013521 293 VRLGWTVVPEELRYSNG---YPVIKDFNR--IVCTCFNGASNIV----QAGGLACLSPDGFQALRTVIDYYKENAKIIVD 363 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~----~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 363 (441)
+-.++..++++.... +... .+.. -....+++++.++ -.+...++++++. ..+.+.-.++.+.+++
T Consensus 212 --~Tvvivr~dllg~~~~~tP~v~-dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl---~a~e~~n~~KskllYd 285 (370)
T KOG2790|consen 212 --VTVVIVRKDLLGNALDITPSVL-DYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGL---AAMEKLNQEKSKLLYD 285 (370)
T ss_pred --cEEEEEehhhhcccccCCcccc-ceeeeccccccccCCCeeeeeehhhHHHHHHhcccH---HHHHHHHHHHHHHHHH
Confidence 455667777752210 0000 0000 0111222233222 2334455555555 5666677788999999
Q ss_pred HHHhC-CCeeeC----CCCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHHH
Q 013521 364 AFQSL-GLKVNG----GKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEACR 435 (441)
Q Consensus 364 ~L~~~-g~~~~~----~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l~ 435 (441)
.+.+. |+-..+ ...-+.+.+++. ..-+.+|+....++ +..-.-|.. .-+.||.|+++ +-++.+.++.
T Consensus 286 ~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d~Le~eFLkeA~~~-~mv~LKGhR----SVGGiRASlYNAisv~~~q~L~~ 360 (370)
T KOG2790|consen 286 AIDNSNGFYRCPVEPSVRSRMNVPFRIEKDELEAEFLKEAAKE-HMVQLKGHR----SVGGIRASLYNAISVEEVQKLAA 360 (370)
T ss_pred HHHhcCCeEEcccchhhhhhcccceeecchHHHHHHHHHHHHh-hhhcccccc----ccccchhhhhccccHHHHHHHHH
Confidence 99987 654322 123456777776 22345666666666 444333432 24579999855 7888888888
Q ss_pred HHHhh
Q 013521 436 RLKNF 440 (441)
Q Consensus 436 ~l~~~ 440 (441)
-|+++
T Consensus 361 ~m~~F 365 (370)
T KOG2790|consen 361 FMKEF 365 (370)
T ss_pred HHHHH
Confidence 77764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.011 Score=64.23 Aligned_cols=227 Identities=10% Similarity=0.075 Sum_probs=130.3
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCC
Q 013521 90 ITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPS 167 (441)
Q Consensus 90 ~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~ 167 (441)
.+..+...+.+ ..+.-|.++.|...+|+.||.|+.. ++.+++++|++.+.-..|+.-.+.++.|.=.++=+..+
T Consensus 406 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1082)
T PLN02672 406 FLAYLASALKG----LSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLT 481 (1082)
T ss_pred HHHHHHHHHcc----CCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhh
Confidence 34556666654 6677898999999999999999976 66778999999999999997554444443111111111
Q ss_pred chhhHhHHHHhcccc--ccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH
Q 013521 168 FPAYIDTSVIVGQAG--KFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA 245 (441)
Q Consensus 168 y~~~~~~~~~~g~~~--~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~ 245 (441)
-+--..+...+...+ ..... ...+.|+.-|.. .+....+.+.-++++|+..-.+ +-..+....+.|++.+++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 555 (1082)
T PLN02672 482 RWLPKKWLTSLAIENATSDSKS-DDVITVIEAPRQ--SDLVIELIKKLKPQVVVTGMAD---FEMRTSTAFEHLLNVTAE 555 (1082)
T ss_pred ccCCHHHHhHhhhhcccccCcc-CCeEEEEeCCCc--chHHHHHHHhCCCeEEEEeccc---hhhhhHHHHHHHHHHHHh
Confidence 111122222222111 00000 011223322222 2222333344678887764332 222345668999999999
Q ss_pred cCcEEEEccccc-ccccCCCCCccccc---CCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHh
Q 013521 246 NGSIIVYDSAYA-AYITDPSPRSIYEI---PGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVC 321 (441)
Q Consensus 246 ~~~~ii~De~~~-~~~~~~~~~~~~~~---~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~ 321 (441)
-|..++.|..-. ++..-..+..+..+ ...+.+..++.++-|.-=.+.+-+.+++.-++-+ .+.+.....
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 628 (1082)
T PLN02672 556 IGARLFLDISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISENEAV-------LKALSKTGE 628 (1082)
T ss_pred hCcEEEEehhhheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEecCcHHH-------HHHHHHHHH
Confidence 999999997633 33322223333332 1235566778889887656999999999766654 344443333
Q ss_pred hhcCCCcHHHHH
Q 013521 322 TCFNGASNIVQA 333 (441)
Q Consensus 322 ~~~~~~~~~~~~ 333 (441)
.....++.+.|.
T Consensus 629 ~~~~~~~~~~~~ 640 (1082)
T PLN02672 629 VLEGRTAIISQF 640 (1082)
T ss_pred hhccchHHHHHH
Confidence 333344555553
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.11 Score=50.17 Aligned_cols=308 Identities=14% Similarity=0.131 Sum_probs=152.6
Q ss_pred CCCCcCcHHHHHHHHHHHhhhCCCC----------CCcEEEcCCcHHHHHH-HHH----h--cCCCC------------E
Q 013521 110 YGAEQGNMALRTAIADKFYKDMGIE----------GDEIFISDGAQSDISR-LQM----L--LGSNV------------T 160 (441)
Q Consensus 110 Y~~~~g~~~lr~~ia~~l~~~~~~~----------~~~I~~t~G~~~al~~-l~~----l--~~~gd------------~ 160 (441)
+...+-..+|..-+-+||.+.++++ .--|+..+.+-+.+-. +.+ + ++.++ .
T Consensus 105 W~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV 184 (511)
T KOG0628|consen 105 WASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLV 184 (511)
T ss_pred eecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhhe
Confidence 3345678899999999997644432 3345555554443332 211 1 23332 3
Q ss_pred EEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-C----CC---CCCccEEEEcCCCCccccCCC
Q 013521 161 VAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-L----ST---TSRTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 161 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~----~~---~~~~~~v~i~~p~NPtG~~~~ 232 (441)
+.+.+.++.++...+...| +++..++.+.+.+...+ + ++ ..-+-.+++.+-. |..+-.
T Consensus 185 ~Y~SDqahssveka~~i~~------------VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~G--TT~~ca 250 (511)
T KOG0628|consen 185 AYCSDQAHSSVEKACLIAG------------VKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLG--TTSSCA 250 (511)
T ss_pred EEecCcccchHHHhHhhcc------------eeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeec--Cccccc
Confidence 5567788888888777777 57888888763332222 1 11 1223333332432 222335
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCc-
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY- 310 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~- 310 (441)
-+++.+|..+|+++|+|+.+|.+|+.-.+--+ ...+.. +...-.-+-.-.||++ +.-+-+.-+-..+..-.....
T Consensus 251 ~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~r--Gie~aDSfn~n~hK~~-~vnfDCs~lWvkd~~~~~~~~~ 327 (511)
T KOG0628|consen 251 FDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMR--GIEYADSFNFNPHKWL-LVNFDCSPLWVKDGTKLSRAFN 327 (511)
T ss_pred cccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhh--cchhhccccCChhhee-EEeeeeecceeecCceeeeeee
Confidence 67899999999999999999999995333211 111111 1100001122235554 244333322222220000000
Q ss_pred ----hhHHHHHHH-HhhhcCCCcH---HHHHHHHHhcCCCcHHHHHHHHHHHHH---HHHHHHHHHHhC-CCeeeCCCCc
Q 013521 311 ----PVIKDFNRI-VCTCFNGASN---IVQAGGLACLSPDGFQALRTVIDYYKE---NAKIIVDAFQSL-GLKVNGGKNA 378 (441)
Q Consensus 311 ----~~~~~~~~~-~~~~~~~~~~---~~~~a~~~~l~~~~~~~~~~~~~~~~~---~~~~l~~~L~~~-g~~~~~~~~~ 378 (441)
.+....... .....+..+. +-..-.--.++..+ .+.+++++++ ..+.+.+.+.+- .+++..+.-=
T Consensus 328 vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~G---ve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~l 404 (511)
T KOG0628|consen 328 VDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYG---VENLQNYIREHVRLAKEFETLVRADPRFEIVNKRIL 404 (511)
T ss_pred cChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhhcCCcceeeccccc
Confidence 000000000 0000000110 10000000111111 2333333333 233333333322 4666554443
Q ss_pred eEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec---CHHHHHHHHHHHHhh
Q 013521 379 PYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG---HREYISEACRRLKNF 440 (441)
Q Consensus 379 ~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~---~~~~~~~~l~~l~~~ 440 (441)
-.+++++++ ...+.+..++-....|.+.|.+. .+.-.+|++++. +.++++++.+.|.+.
T Consensus 405 gLvcFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l---~gk~vlRf~V~s~~t~~~di~~a~~~I~~~ 468 (511)
T KOG0628|consen 405 GLVCFRLKGDNEINEALLNRLNSSGRIHLVPASL---HGKFVLRFAVCSPLTNESDIDEAWKIIFEA 468 (511)
T ss_pred ceeEEeecCCcHHHHHHHHHHHhcCcEEEEEeee---cceEEEEEEecCCCCcHHHHHHHHHHHHHH
Confidence 457888874 34567888888888899988653 345579999754 578899998888763
|
|
| >PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.00092 Score=60.94 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=28.1
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||-+|+++|++||+ .+.|+||||+..
T Consensus 46 ~VSR~TVR~Al~~L~~eGli~r~~G~GtfV~~~ 78 (241)
T PRK10079 46 EVNRHTLRRAIDQLVEKGWVQRRQGVGVLVLMR 78 (241)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCEEEEecC
Confidence 4559999999999999999 999999999753
|
|
| >TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0022 Score=58.36 Aligned_cols=31 Identities=13% Similarity=-0.008 Sum_probs=28.1
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||-+|+++|+.+|+ .+.|+||||+..
T Consensus 43 ~VSR~TvR~Al~~L~~eGli~r~~G~GtfV~~~ 75 (238)
T TIGR02325 43 GVNRHTVRRAIAALVERGLLRAEQGRGTFVAAR 75 (238)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCEEEECCC
Confidence 4559999999999999999 999999999754
|
All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond. |
| >TIGR02404 trehalos_R_Bsub trehalose operon repressor, B | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0013 Score=59.59 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=27.6
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|.||-+|+++|+++|+ .+.|+||||+.
T Consensus 35 gVSR~TVR~Al~~L~~eGli~r~~G~GTfV~~ 66 (233)
T TIGR02404 35 GASRETVRKALNLLTEAGYIQKIQGKGSIVLN 66 (233)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCCceEEEec
Confidence 4559999999999999999 99999999975
|
subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. |
| >PRK14999 histidine utilization repressor; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0016 Score=59.29 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=27.6
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|.||-+|+++|+.||+ .++|+||||+.
T Consensus 47 gVSR~TVR~Al~~L~~eGli~r~~GkGTfV~~ 78 (241)
T PRK14999 47 GFSRMTINRALRELTDEGWLVRLQGVGTFVAE 78 (241)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCcEEEECC
Confidence 4559999999999999999 99999999975
|
|
| >PRK11402 DNA-binding transcriptional regulator FrlR; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0016 Score=59.27 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=27.9
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||-+|+++|+++|+ .+.|+||||+..
T Consensus 44 ~VSR~TvR~Al~~L~~eGli~r~~G~GTfV~~~ 76 (241)
T PRK11402 44 NVSRITIRKAISDLVADGVLIRWQGKGTFVQSQ 76 (241)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCceeEECCC
Confidence 4559999999999999999 999999999753
|
|
| >COG2188 PhnF Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0017 Score=58.83 Aligned_cols=29 Identities=17% Similarity=0.058 Sum_probs=27.4
Q ss_pred cccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 15 LKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 15 ~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+|.||-+|+++|+++|+ .+.|+||||+..
T Consensus 44 SR~TvRkAL~~L~~eGli~r~~G~GtfV~~~ 74 (236)
T COG2188 44 SRMTVRKALDELVEEGLIVRRQGKGTFVASP 74 (236)
T ss_pred cHHHHHHHHHHHHHCCcEEEEecCeeEEcCc
Confidence 39999999999999999 999999999875
|
|
| >PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0019 Score=45.32 Aligned_cols=27 Identities=19% Similarity=0.046 Sum_probs=24.5
Q ss_pred CcccchhhhHHhhhhCCC--CCccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW--PVPRHCTEV 40 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~--~~~~~g~~v 40 (441)
++|+||.+|+..|+++|+ .++++|+||
T Consensus 36 vsr~tvr~al~~L~~~g~i~~~~~~G~~V 64 (64)
T PF00392_consen 36 VSRTTVREALRRLEAEGLIERRPGRGTFV 64 (64)
T ss_dssp S-HHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred cCCcHHHHHHHHHHHCCcEEEECCceEEC
Confidence 349999999999999999 999999987
|
The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A .... |
| >TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0021 Score=58.14 Aligned_cols=30 Identities=13% Similarity=-0.078 Sum_probs=27.7
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|.||-+|+++|+.||+ .+.|+||||+.
T Consensus 36 ~VSR~TVR~Al~~L~~eGli~r~~G~GtfV~~ 67 (230)
T TIGR02018 36 GCSRMTVNRALRELTDAGLLERRQGVGTFVAE 67 (230)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCEEEEcc
Confidence 4569999999999999999 99999999975
|
This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.64 Score=47.04 Aligned_cols=297 Identities=13% Similarity=0.160 Sum_probs=163.9
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH---HHHHHHHhc-CCCC----EEEEeCCCchhhHhHHHHhcccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS---DISRLQMLL-GSNV----TVAVQDPSFPAYIDTSVIVGQAGKF 184 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~---al~~l~~l~-~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~ 184 (441)
.+|+.++-..+-++|..-.|.+.-..-..+|++. ++..|.+.+ ..|+ .-+++.-.|..-...+..+|
T Consensus 577 aqGY~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Mag----- 651 (1001)
T KOG2040|consen 577 AQGYQQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAG----- 651 (1001)
T ss_pred HhhHHHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcC-----
Confidence 4688888888888886534444333344556553 455565554 3332 34566667777777888888
Q ss_pred ccccCccceeEEeecCCCCCccC-CCC----C-CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc
Q 013521 185 LKETGKYRNIVYMNCRPENNFFP-DLS----T-TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA 258 (441)
Q Consensus 185 ~~~~~~~~~v~~v~~~~~~~~~~-~~~----~-~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~ 258 (441)
.++++|..+..++++. ++. + ..+-.+++++.|+. -|+. ++.+++++++.++||--|..|.+-..
T Consensus 652 -------mkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHehGGQVYlDGANMN 721 (1001)
T KOG2040|consen 652 -------MKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVF--EEGIDDICDIIHEHGGQVYLDGANMN 721 (1001)
T ss_pred -------CEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEecccc-cccc--cccHHHHHHHHHhcCCEEEecCCCcc
Confidence 5899999988766532 221 1 35667888888854 2332 34699999999999999999998763
Q ss_pred cccCCCCCcccccCCCcceeEEEecCCcccCCc----cceeEEEEeecccccc-CCchhHH--------HHHHHHhhhcC
Q 013521 259 YITDPSPRSIYEIPGAREVAIEISSFSKFAGFT----GVRLGWTVVPEELRYS-NGYPVIK--------DFNRIVCTCFN 325 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~----G~r~G~l~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~ 325 (441)
-. ..+....+..- .+.=--++|+|++| |..+|=+.+.+.+... ....++. .+..+.+..|.
T Consensus 722 Aq-----VGlc~pGd~Ga-DV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~G 795 (1001)
T KOG2040|consen 722 AQ-----VGLCRPGDIGA-DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWG 795 (1001)
T ss_pred ce-----ecccCCccccc-cceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCC
Confidence 21 12222111111 12222377777543 3445554444433200 0000111 12222223333
Q ss_pred CCc-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceE---EEEEcC------CCChHHHH
Q 013521 326 GAS-NIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPY---VWVQFP------GSSSWDVF 394 (441)
Q Consensus 326 ~~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~---~~~~~~------~~~~~~~~ 394 (441)
+.. .+...+.+..+-..+. ...-+.---+..++.+.|+.+ .+-+.. ..|.- +.+++. +.+..+++
T Consensus 796 sa~ILpISwaYikmMG~~GL---~~as~~AiLNaNYMakRLe~hYkil~~~-~~~~vaHEFIlD~r~fK~~agieavDvA 871 (1001)
T KOG2040|consen 796 SALILPISWAYIKMMGSGGL---KDASKIAILNANYMAKRLESHYKILFRG-ENGLVAHEFILDLRPFKKTAGIEAVDVA 871 (1001)
T ss_pred cceeehhHHHHHHHhccccc---chhhHHHhhhhHHHHHHHhhccceeEec-CCcceeeeeeeechhhccccCCcHHHHH
Confidence 222 2334455555555554 222233334677888999987 444443 34331 445553 34667788
Q ss_pred HHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHH
Q 013521 395 AEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLK 438 (441)
Q Consensus 395 ~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~ 438 (441)
++|. .+|..-...++- -.+.+-|-= ..+.+++++++++|-
T Consensus 872 KRL~-DYgFHaPTmswP---V~gtLMIEPTESE~k~ElDRfcdAli 913 (1001)
T KOG2040|consen 872 KRLM-DYGFHAPTMSWP---VAGTLMIEPTESEDKAELDRFCDALI 913 (1001)
T ss_pred HHHH-hccCCCCccccc---cCCceEeccCccccHHHHHHHHHHHH
Confidence 8866 468765544431 234444432 235678888887764
|
|
| >PRK09764 DNA-binding transcriptional repressor MngR; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0038 Score=56.82 Aligned_cols=31 Identities=13% Similarity=0.102 Sum_probs=28.0
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||-+|+++|+.+|+ .+.|+||||+..
T Consensus 40 ~VSR~TvR~Al~~L~~eGli~r~~G~GtfV~~~ 72 (240)
T PRK09764 40 GVSRVTVRQALRQLVEQQILESIQGSGTYVKEE 72 (240)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCceeEEccc
Confidence 5669999999999999999 899999999753
|
|
| >TIGR03337 phnR transcriptional regulator protein | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.055 Score=48.85 Aligned_cols=31 Identities=13% Similarity=-0.002 Sum_probs=27.9
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||.+|+++|+.+|+ .+.|+||||+..
T Consensus 36 ~Vsr~Tvr~Al~~L~~eGli~~~~g~Gt~V~~~ 68 (231)
T TIGR03337 36 NTTRVTIREALQQLEAEGLIYREDRRGWFVSPP 68 (231)
T ss_pred CCCHHHHHHHHHHHHHCCeEEEeCCCEEEECCc
Confidence 4559999999999999999 999999999753
|
This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. |
| >PRK04984 fatty acid metabolism regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.036 Score=50.39 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=27.5
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||-.|+..|+.+|+ .++|+||||+.
T Consensus 42 gVSRt~VReAL~~L~~eGlv~~~~g~G~~V~~ 73 (239)
T PRK04984 42 GVTRTTLREVLQRLARDGWLTIQHGKPTKVNN 73 (239)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCCCeeEeCC
Confidence 4559999999999999999 99999999975
|
|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.042 Score=37.56 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=22.9
Q ss_pred cccchhhhHHhhhhCCC--CCccccccc
Q 013521 15 LKATVPFTMDFFLSSRW--PVPRHCTEV 40 (441)
Q Consensus 15 ~~~Tv~~a~~~l~~~g~--~~~~~g~~v 40 (441)
+++||.+++..|+++|+ .++|.|++|
T Consensus 33 s~~tv~~~l~~L~~~g~i~~~~~~g~~v 60 (60)
T smart00345 33 SRTTVREALSRLEAEGLVQRRPGSGTFV 60 (60)
T ss_pred CHHHHHHHHHHHHHCCCEEEecCCeeEC
Confidence 49999999999999999 777888764
|
|
| >PF14502 HTH_41: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.066 Score=34.37 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=23.0
Q ss_pred CcccchhhhHHhhhhCCC----CCccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW----PVPRHCTEV 40 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~----~~~~~g~~v 40 (441)
.+|+||++|+..|++.|- ++..-|||+
T Consensus 18 vs~GtiQ~Alk~Le~~gaI~Le~rGh~GTfi 48 (48)
T PF14502_consen 18 VSRGTIQNALKFLEENGAIKLESRGHLGTFI 48 (48)
T ss_pred cchhHHHHHHHHHHHCCcEEeeecCcCcccC
Confidence 449999999999999998 677777874
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.1 Score=40.32 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 231 ~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
-+++++++|..+|..|++.-|+..+|+- .....-.-+.+-.......-++.|+-|.|-+|
T Consensus 171 r~pd~leaiaaica~~diphivnnaygl-qsee~i~~iaa~~~~grida~vqsldknf~vp 230 (432)
T KOG3843|consen 171 RSPDNLEAIAAICAAHDIPHIVNNAYGL-QSEECIHKIAAAAECGRIDAFVQSLDKNFMVP 230 (432)
T ss_pred CCCchHHHHHHHHHccCchhhhcccccc-chHHHHHHHHHHhhhccHHHHHHHhhhcceee
Confidence 4678899999999999999999999983 22111111221111222336788999998554
|
|
| >PRK10225 DNA-binding transcriptional repressor UxuR; Provisional | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.092 Score=48.30 Aligned_cols=30 Identities=7% Similarity=-0.163 Sum_probs=27.5
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||-.|+..|+++|+ .++|+|+||+.
T Consensus 44 gVSRtpVREAL~~L~~eGlV~~~~~~G~~V~~ 75 (257)
T PRK10225 44 DVTRTVVREALIMLEIKGLVEVRRGAGIYVLD 75 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCEEEEeC
Confidence 4559999999999999999 89999999975
|
|
| >COG2186 FadR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.11 Score=47.09 Aligned_cols=30 Identities=10% Similarity=-0.117 Sum_probs=27.8
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|+||--|+..|+..|| .+.|+||||..
T Consensus 45 gVSR~~vREAl~~L~a~Glve~r~G~Gt~V~~ 76 (241)
T COG2186 45 GVSRTVVREALKRLEAKGLVEIRQGSGTFVRP 76 (241)
T ss_pred CCCcHHHHHHHHHHHHCCCeeecCCCceEecC
Confidence 4569999999999999999 99999999975
|
|
| >TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.11 Score=47.06 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=27.5
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|+||-.|+..|+.+|+ .++|+|++|+.
T Consensus 41 gVSRtpVREAL~~Le~eGlV~~~~~~G~~V~~ 72 (235)
T TIGR02812 41 GVTRTTLREVLQRLARDGWLTIQHGKPTKVNN 72 (235)
T ss_pred CcCHHHHHHHHHHHHHCCCEEEeCCCccEecC
Confidence 4559999999999999999 89999999975
|
Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function. |
| >TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.13 Score=45.64 Aligned_cols=30 Identities=7% Similarity=-0.103 Sum_probs=27.5
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||-.|+..|+.+|+ .++|+|++|..
T Consensus 45 gVSRtpVReAL~~L~~eGlv~~~~~~G~~V~~ 76 (212)
T TIGR03338 45 GVSRGPVREAFRALEEAGLVRNEKNRGVFVRE 76 (212)
T ss_pred CCChHHHHHHHHHHHHCCCEEEecCCCeEEec
Confidence 4559999999999999999 89999999975
|
This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter. |
| >PRK09464 pdhR transcriptional regulator PdhR; Reviewed | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.12 Score=47.40 Aligned_cols=30 Identities=7% Similarity=-0.090 Sum_probs=27.6
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|+||-.|+..|+.+|+ .++|+|+||+.
T Consensus 45 gVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~ 76 (254)
T PRK09464 45 DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQS 76 (254)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCceeEEec
Confidence 4569999999999999999 89999999975
|
|
| >PRK11523 DNA-binding transcriptional repressor ExuR; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.13 Score=47.26 Aligned_cols=30 Identities=7% Similarity=-0.049 Sum_probs=27.5
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|+||-.|+..|+.+|+ .++|+|+||+.
T Consensus 43 gVSRtpVREAL~~L~~eGlV~~~~~~G~~V~~ 74 (253)
T PRK11523 43 NVSRTVVREAIIMLEVEGYVEVRKGSGIHVVS 74 (253)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCeeEEec
Confidence 4559999999999999999 99999999975
|
|
| >PRK09990 DNA-binding transcriptional regulator GlcC; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.14 Score=46.90 Aligned_cols=30 Identities=7% Similarity=-0.022 Sum_probs=27.6
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||-.|+..|+.+|+ .++|+|+||+.
T Consensus 42 gVSRtpVREAL~~L~~eGlV~~~~~~G~~V~~ 73 (251)
T PRK09990 42 GFSRSALREGLTVLRGRGIIETAQGRGSFVAR 73 (251)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCCCeeEEec
Confidence 4569999999999999999 89999999985
|
|
| >PRK10421 DNA-binding transcriptional repressor LldR; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.14 Score=46.99 Aligned_cols=30 Identities=7% Similarity=-0.094 Sum_probs=27.6
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|+||-.|+..|+.+|+ .++|+|+||+.
T Consensus 37 gVSRtpVREAL~~Le~~GlV~~~~~~G~~V~~ 68 (253)
T PRK10421 37 GVSRNSLREALAKLVSEGVLLSRRGGGTFIRW 68 (253)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCCCeEEEec
Confidence 4569999999999999999 89999999985
|
|
| >PRK03837 transcriptional regulator NanR; Provisional | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.17 Score=45.98 Aligned_cols=30 Identities=13% Similarity=-0.011 Sum_probs=27.5
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||-.|+..|+.+|+ .++|+|++|..
T Consensus 48 gVSRt~VREAL~~L~~eGlv~~~~~~G~~V~~ 79 (241)
T PRK03837 48 GVGRPAVREALQALKRKGLVQISHGERARVSR 79 (241)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCceeEec
Confidence 4669999999999999999 89999999975
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=88.71 E-value=6.3 Score=34.76 Aligned_cols=101 Identities=14% Similarity=0.296 Sum_probs=62.5
Q ss_pred CCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC
Q 013521 133 IEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT 212 (441)
Q Consensus 133 ~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~ 212 (441)
.+...|++..|+..|...+..+++.|-.|.+.+|....-.......| ++..+.-.... .++
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~-------------~i~~~~~~~~~---~dl--- 67 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG-------------GITWLARCFDA---DIL--- 67 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC-------------CEEEEeCCCCH---HHh---
Confidence 45568999999999998888888888888888887653332222233 44454432221 112
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEE-Eccc-ccccc
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIV-YDSA-YAAYI 260 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii-~De~-~~~~~ 260 (441)
....+|+ ..|++| +--++|...|++.++++- +|+. .++|.
T Consensus 68 ~~~~lVi-~at~d~-------~ln~~i~~~a~~~~ilvn~~d~~e~~~f~ 109 (205)
T TIGR01470 68 EGAFLVI-AATDDE-------ELNRRVAHAARARGVPVNVVDDPELCSFI 109 (205)
T ss_pred CCcEEEE-ECCCCH-------HHHHHHHHHHHHcCCEEEECCCcccCeEE
Confidence 3455544 455554 124689999999998873 5553 34444
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=87.17 E-value=0.32 Score=37.03 Aligned_cols=28 Identities=7% Similarity=-0.162 Sum_probs=23.1
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEV 40 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v 40 (441)
+..|.||+++++.|+.+|| ...|+|+|-
T Consensus 58 g~sr~tVsr~L~~Le~~GlI~r~~~~~~~~ 87 (95)
T TIGR01610 58 GLSRTHVSDAIKSLARRRIIFRQGMMGIVG 87 (95)
T ss_pred CcCHHHHHHHHHHHHHCCCeeeecCCceee
Confidence 3459999999999999999 556678774
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >PRK11534 DNA-binding transcriptional regulator CsiR; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=0.36 Score=43.27 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=27.2
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|++|-.|+..|+.+|+ .++++|++|+.
T Consensus 41 gVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~ 72 (224)
T PRK11534 41 ALGVGPLREALSQLVAERLVTVVNQKGYRVAS 72 (224)
T ss_pred CCChHHHHHHHHHHHHCCCEEEeCCCceEeCC
Confidence 4559999999999999999 89999999975
|
|
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=84.54 E-value=0.54 Score=32.57 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=22.5
Q ss_pred CcccchhhhHHhhhhCCC--CCccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW--PVPRHCTEV 40 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~--~~~~~g~~v 40 (441)
.+++||.+++..|+++|+ ..++.|.++
T Consensus 37 is~~~v~~~l~~L~~~G~i~~~~~~~~~l 65 (66)
T cd07377 37 VSRTTVREALRELEAEGLVERRPGRGTFV 65 (66)
T ss_pred CCHHHHHHHHHHHHHCCCEEecCCCeEEe
Confidence 449999999999999999 566777665
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >PRK11414 colanic acid/biofilm transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=83.90 E-value=0.65 Score=41.55 Aligned_cols=30 Identities=13% Similarity=-0.015 Sum_probs=26.8
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|++|-.|+..|+.+|+ .++++|++|..
T Consensus 45 gVSRtpVREAL~~L~~eGLV~~~~~~g~~v~~ 76 (221)
T PRK11414 45 GMSITPVREALLRLVSVNALSVAPAQAFTVPE 76 (221)
T ss_pred CCCchhHHHHHHHHHHCCCEEecCCCceeecC
Confidence 4559999999999999999 89999999863
|
|
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=82.38 E-value=0.66 Score=31.03 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=15.9
Q ss_pred cccchhhhHHhhhhCCC
Q 013521 15 LKATVPFTMDFFLSSRW 31 (441)
Q Consensus 15 ~~~Tv~~a~~~l~~~g~ 31 (441)
+++||.++..+|++.||
T Consensus 38 s~~Tv~~~i~~L~~~G~ 54 (55)
T PF13730_consen 38 SRRTVQRAIKELEEKGL 54 (55)
T ss_pred CHHHHHHHHHHHHHCcC
Confidence 39999999999999997
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 441 | ||||
| 4fl0_A | 456 | Crystal Structure Of Ald1 From Arabidopsis Thaliana | 1e-173 | ||
| 2z1z_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 1e-166 | ||
| 3eia_A | 432 | Crystal Structure Of K270q Variant Of Ll-Diaminopim | 1e-166 | ||
| 3ei8_A | 432 | Crystal Structure Of K270n Variant Of Ll-Diaminopim | 1e-165 | ||
| 2z20_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 1e-162 | ||
| 3qgu_A | 449 | L,L-Diaminopimelate Aminotransferase From Chalmydom | 1e-142 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 5e-84 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 1e-25 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 2e-23 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 2e-23 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 1e-20 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 6e-19 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 1e-17 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 2e-17 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 4e-17 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 1e-14 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 1e-14 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 2e-14 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 2e-14 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 2e-14 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 5e-14 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 6e-14 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 4e-12 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 4e-12 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 9e-12 | ||
| 3jtx_A | 396 | Crystal Structure Of Aminotransferase (np_283882.1) | 6e-10 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 9e-10 | ||
| 3ezs_A | 376 | Crystal Structure Of Aminotransferase Aspb (Np_2074 | 4e-09 | ||
| 2egy_A | 397 | Crystal Structure Of Lysn, Alpha-Aminoadipate Amino | 9e-09 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 1e-08 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 1e-08 | ||
| 3ffh_A | 363 | The Crystal Structure Of Histidinol-phosphate Amino | 4e-08 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 5e-08 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 2e-07 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 2e-07 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 2e-07 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 4e-07 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-06 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 2e-06 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 3e-06 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 6e-06 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 8e-06 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 8e-06 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 1e-05 | ||
| 3ly1_A | 354 | Crystal Structure Of Putative Histidinol-Phosphate | 2e-05 | ||
| 1gew_A | 356 | Crystal Structure Of Histidinol-Phosphate Aminotran | 2e-05 | ||
| 1vp4_A | 425 | Crystal Structure Of A Putative Aminotransferase (T | 2e-05 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 3e-05 | ||
| 1fg3_A | 356 | Crystal Structure Of L-Histidinol Phosphate Aminotr | 3e-05 | ||
| 3cq5_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 3e-05 | ||
| 3cq4_A | 376 | Histidinol-Phosphate Aminotransferase From Coryneba | 4e-05 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 7e-05 | ||
| 3cq6_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 1e-04 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 2e-04 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 2e-04 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 2e-04 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 3e-04 | ||
| 2zy5_A | 546 | R487a Mutant Of L-Aspartate Beta-Decarboxylase Leng | 4e-04 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 5e-04 | ||
| 3p1t_A | 337 | Crystal Structure Of A Putative Aminotransferase (B | 6e-04 | ||
| 2zy3_A | 546 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 6e-04 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 7e-04 |
| >pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456 | Back alignment and structure |
|
| >pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432 | Back alignment and structure |
|
| >pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Length = 432 | Back alignment and structure |
|
| >pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas Reinhardtii Length = 449 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate Aminotransferase (Substrate Free Form), From Thermus Thermophilus Hb27 Length = 397 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate Aminotransferase From Listeria Innocua Clip11262. Length = 363 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|3LY1|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate Aminotransferase (Yp_050345.1) From Erwinia Carotovora Atroseptica Scri1043 At 1.80 A Resolution Length = 354 | Back alignment and structure |
|
| >pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356 | Back alignment and structure |
|
| >pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356 | Back alignment and structure |
|
| >pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum In Complex With Pmp Length = 369 | Back alignment and structure |
|
| >pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Length = 376 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Holo-Form (Plp Covalently Bound ) Length = 369 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|2ZY5|A Chain A, R487a Mutant Of L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase (Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60 A Resolution Length = 337 | Back alignment and structure |
|
| >pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 572 bits (1476), Expect = 0.0
Identities = 280/407 (68%), Positives = 332/407 (81%)
Query: 35 RHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAM 94
+ T+VSRN NM LQ+GYLFPEI+ R S H+ K+PDA++I LGIGDTT+PIP++ITSAM
Sbjct: 19 EYKTKVSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAM 78
Query: 95 AEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQML 154
A+ A LST++GY GYGAEQG LR AIA FY +GI D++F+SDGA+ DISRLQ++
Sbjct: 79 AKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRLQVM 138
Query: 155 LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSR 214
GSNVT+AVQDPS+PAY+D+SVI+GQ G+F + KY NI YM C PEN FFPDLST R
Sbjct: 139 FGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGR 198
Query: 215 TDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGA 274
TDIIFFCSPNNPTG AAT +QL +LVEFAK NGSIIVYDSAYA Y++D +PRSI+EIPGA
Sbjct: 199 TDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGA 258
Query: 275 REVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAG 334
EVA+E +SFS +AGFTGVRLGWTV+P++L YS+G+PV KDFNRI+CTCFNGASNI QAG
Sbjct: 259 EEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAG 318
Query: 335 GLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVF 394
LACL+P+G +A+ VI +YKEN II+D F SLG V GGKNAPYVWV FP SSWDVF
Sbjct: 319 ALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPNQSSWDVF 378
Query: 395 AEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
AEILEKTH++T PGSGFGPGG +RVSAFGHRE I EACRR K
Sbjct: 379 AEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLY 425
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 553 bits (1428), Expect = 0.0
Identities = 244/408 (59%), Positives = 299/408 (73%), Gaps = 3/408 (0%)
Query: 35 RHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAM 94
+V RN N L++GYLFPEI+ R H K+PDA++I LGIGDTT+P+P I AM
Sbjct: 32 AGTIDVQRNENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAM 91
Query: 95 AEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQML 154
A+ A L+T +GY GYGAEQG ALR A+A FY G DEIFISDG++ DI+R+QM+
Sbjct: 92 AKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARIQMM 151
Query: 155 LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSR 214
GS TVAVQDPS+P Y+DTSV++G G + I YM C P+N+FFPDLS R
Sbjct: 152 FGSKPTVAVQDPSYPVYVDTSVMMGMTGDH--NGTGFDGIEYMVCNPDNHFFPDLSKAKR 209
Query: 215 TDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG 273
TDIIFFCSPNNPTG AAT QL +LV FA+ NGSI+VYD+AYA YI++P P++IYEIPG
Sbjct: 210 TDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG 269
Query: 274 AREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQA 333
A EVAIE SFSK+AGFTGVRLGWTVVP+ L+Y+NG PV D+NR++ TCFNGASNIVQA
Sbjct: 270 ADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQA 329
Query: 334 GGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDV 393
GGLACL P+G + + +I +YKENA+I+ F +G V GG +APY+WV FPG SWDV
Sbjct: 330 GGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGFPGKPSWDV 389
Query: 394 FAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
FAEILE+ +I+T PGSG+GP G +R SAFG RE I EA RR K
Sbjct: 390 FAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAY 437
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 509 bits (1313), Expect = 0.0
Identities = 167/405 (41%), Positives = 240/405 (59%), Gaps = 18/405 (4%)
Query: 40 VSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAF 99
+ RN + SL YLF ++ R ++ ++P +I L IGDTTQP+ + A A
Sbjct: 1 MKRNPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIA 60
Query: 100 ALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNV 159
LS+ +GYG + G ALR +++ FY+ ++ EIFISDGA+ D+ RL G N
Sbjct: 61 RLSSPTTCRGYGPDFGLPALRQKLSEDFYRGF-VDAKEIFISDGAKVDLFRLLSFFGPNQ 119
Query: 160 TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIF 219
TVA+QDPS+PAY+D + + G + I+ + C EN FFP+ + DI+
Sbjct: 120 TVAIQDPSYPAYLDIARLTGA-----------KEIIALPCLQENAFFPEFPEDTHIDILC 168
Query: 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVA 278
CSPNNPTG QL+ +V +A + +I++D+AY+ +I+DPS P+SI+EIP AR A
Sbjct: 169 LCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCA 228
Query: 279 IEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLAC 338
IEI+SFSK GF G+RLGWTV+P+EL Y++G+ VI+D+ R + T FNGAS Q G+A
Sbjct: 229 IEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAG 288
Query: 339 LSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP--GSSSWDVFAE 396
LS I YY+EN+ ++ A + G +V GG++APY+WV+ S D+F
Sbjct: 289 LSILP---QLEAIHYYRENSDLLRKALLATGFEVFGGEHAPYLWVKPTQANISDRDLFDF 345
Query: 397 ILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
L + HI PG GFG G+ +R S+ G RE I AC RL+
Sbjct: 346 FLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQMAP 390
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 7e-71
Identities = 96/413 (23%), Positives = 175/413 (42%), Gaps = 48/413 (11%)
Query: 46 MESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK 105
++ L Y+F + + R+ D +I L +G+ P P I + A +
Sbjct: 14 IDRLPP-YVFNITAELKMAARRRGED--IIDLSMGNPDGPTPPHIVEKLCTVA----QRE 66
Query: 106 GYKGYGAEQGNMALRTAIADKFYKDMGIEGD---EIFISDGAQSDISRLQM-LLGSNVTV 161
GY +G LR AI+ + ++ D E ++ G++ ++ L + L T+
Sbjct: 67 DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTI 126
Query: 162 AVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS-----TTSRTD 216
V +PS+P +I +VI G + + P +FF +L + +
Sbjct: 127 LVPNPSYPIHIYGAVIAGA------------QVRSVPLVPGIDFFNELERAIRESIPKPR 174
Query: 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-PSPRSIYEIPGAR 275
++ P+NPT +++V AK ++V+D AYA + D SI ++PGA+
Sbjct: 175 MMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAK 234
Query: 276 EVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGG 335
++A+E + SK G R+G+ V EL + RI G +Q
Sbjct: 235 DIAVEFFTLSKSYNMAGWRIGFMVGNPEL--------VSALARIKSYHDYGTFTPLQVAA 286
Query: 336 LACL--SPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP----GSS 389
+A L + + Y++ ++V + G V K + YVW + P
Sbjct: 287 IAALEGDQQCVRDIARQ---YQQRRDVLVKGLREAGWMVENPKASMYVWAKIPEPYAHLG 343
Query: 390 SWDVFAE-ILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
S + FA+ +L+ + PG GFG G++H+R + +R+ + +A R +K
Sbjct: 344 SLE-FAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMF 395
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 5e-67
Identities = 97/420 (23%), Positives = 157/420 (37%), Gaps = 57/420 (13%)
Query: 50 QSGYLFPEISMRESEHIRKHPD---------------ARLIRLGIGDTTQPIPDIITSAM 94
S L P S S + PD LI + +G P P I
Sbjct: 10 HSSGLVPRGSHMISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHF 69
Query: 95 AEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD---EIFISDGAQSDISRL 151
+ T+ + YGA G A + AI D + + + D E+ I G ++ + +
Sbjct: 70 QKAL----TIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAV 125
Query: 152 QM-LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS 210
++ V + DP + Y+ ++ V +N ++ PD S
Sbjct: 126 PTCVINPGDYVLLPDPGYTDYLAGVLLADG------------KPVPLNLE-PPHYLPDWS 172
Query: 211 -----TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP 265
+T +I+ PNNPTG AT + + + K + IV+D AY A+ D
Sbjct: 173 KVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKN 232
Query: 266 RSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFN 325
SI ++VAIEI S SK +G R+G+ V +++ I+ +
Sbjct: 233 PSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDM--------IQALKKYQTHTNA 284
Query: 326 GASNIVQAGGLACL--SPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWV 383
G +Q + L D + V +K L K YVW+
Sbjct: 285 GMFGALQDAAIYALNHYDDFLEEQSNV---FKTRRDRFEAMLAKADLPFVHAKGGIYVWL 341
Query: 384 QFP-GSSSWDVFAE-ILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+ P G S F + ++++ IL PG FG GN ++R+S + + EA RL
Sbjct: 342 ETPPGYDSEQ-FEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELA 400
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 3e-66
Identities = 85/408 (20%), Positives = 153/408 (37%), Gaps = 45/408 (11%)
Query: 46 MESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK 105
M + +F + + + + LI L IG T P P+ A+AE
Sbjct: 1 MSRVPEPSVFLVVDEAKRKARERGVG--LIDLSIGSTDLPPPEAPLKALAEAL----NDP 54
Query: 106 GYKGYGAEQGNMALRTAIADKFYKDMGIEGD---EIFISDGAQSDISRLQM-LLGSNVTV 161
GY + + A + G+ D E G+Q ++ L + L +
Sbjct: 55 TTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLL 114
Query: 162 AVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS-----TTSRTD 216
+ + ++P+Y + + + R + DL
Sbjct: 115 LLPEVAYPSYFGAARVASL------------RTFLIPLRED--GLADLKAVPEGVWREAK 160
Query: 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276
++ PNNPTG A W ++ + A+ +G +++D+ Y + + S +PGA+E
Sbjct: 161 VLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKE 220
Query: 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGL 336
+E+ S SK G RLG+ + EE + R+ V G+
Sbjct: 221 RVVELFSLSKSYNLAGFRLGFALGSEEA--------LARLERVKGVIDFNQYAGVLRMGV 272
Query: 337 ACL--SPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP-GSSSWDV 393
L + + V Y+E A + +A + L + + Y+W + P G +
Sbjct: 273 EALKTPKEVVRGYARV---YRERALGMAEALKG-VLSLLPPRATMYLWGRLPEGVDDLE- 327
Query: 394 FAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
F L + + PG GFGPGG +R++ E + EA +R++ L
Sbjct: 328 FGLRLVERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 4e-60
Identities = 74/404 (18%), Positives = 142/404 (35%), Gaps = 53/404 (13%)
Query: 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA 112
Y F + + I + LGIG+ P I A+ H Y
Sbjct: 7 YPFERLR-ALLKEITPKKR--GLDLGIGEPQFETPKFIQDALKNHT------HSLNIYPK 57
Query: 113 EQGNMALRTAIADKFYKDMGIEGD--EIFISDGAQSDISRLQMLLGSNV---TVAVQDPS 167
+LR A F + IE E+ + G++ + + + T+A +P
Sbjct: 58 SAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPF 117
Query: 168 FPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS--TTSRTDIIFFCSPNN 225
+ Y + + + M EN+F P L+ D++ SPNN
Sbjct: 118 YQIYEGAAKFIKA------------KSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNN 165
Query: 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI-----PGAREVAIE 280
PTG + ++L V+ A + I++ D Y+ + P S+ E A + +
Sbjct: 166 PTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLV 225
Query: 281 ISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS 340
I S SK + G+R G+ L ++ + ++N +Q A
Sbjct: 226 IHSLSKRSSAPGLRSGFIAGDSRL--------LEKYKAFRAYLGYTSANAIQKASEAAWL 277
Query: 341 PDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAE-ILE 399
D + + Y N K+ F+ + YV++ + FA+ + +
Sbjct: 278 DD--RHAEFFRNIYANNLKLARKIFK----NTLIYPYSFYVYLPVQNGEN---FAKTLYQ 328
Query: 400 KTHILTIPGSGFGPG--GNEHIRVSAFGHREYISEACRRLKNFL 441
I+T+P G G +++R++ + + ++ +
Sbjct: 329 NEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYR 372
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 189 bits (481), Expect = 2e-55
Identities = 66/405 (16%), Positives = 121/405 (29%), Gaps = 55/405 (13%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGY-KGYGAEQGNMALRTAIADKFYKDMGI 133
R+ +G P P I + L +G Y G L+ + + I
Sbjct: 47 CRMEMGVPGLPAPQIGIETEIQ---KLR--EGVASIYPNLDGLPELKQEASRFAKLFVNI 101
Query: 134 E--GDEIFISDGA-----QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK 186
+ + G+ S + + DP F I+G
Sbjct: 102 DIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILG------- 154
Query: 187 ETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVE 241
K+ + T + I + +PNNPT T ++L+ + E
Sbjct: 155 --QKF---ESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGE 209
Query: 242 FAKANGSIIVYDSAYA------AYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295
A + I++ D AY Y P + + I S SK + G R+
Sbjct: 210 LATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRI 269
Query: 296 GWTVVPEELRYSNGYPVIKDFNRIVCTCF----------NGASNIVQAGGLACL--SPDG 343
G ++ +L + + F R+ +GA++ Q G A L DG
Sbjct: 270 GVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDG 329
Query: 344 FQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAP------YVW-VQFPGSSSWDVFAE 396
R + Y A+I+ F G + K+ + + V + G S + +
Sbjct: 330 EYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEK 389
Query: 397 ILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+ + ++ + +RL+
Sbjct: 390 FVRYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLN 434
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 3e-55
Identities = 86/426 (20%), Positives = 152/426 (35%), Gaps = 60/426 (14%)
Query: 43 NVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALS 102
N ++ L+ Y F + + I + L IG+ P P +IT A+
Sbjct: 3 NTLLKQLKP-YPFARLH-EAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASL---- 56
Query: 103 TVKGYKGYGAEQGNMALRTAIADKFYKD--MGIEGD---EIFISDGAQSDISRLQMLL-- 155
+ Y G LR A A+ + K G+ D EI G++ + +
Sbjct: 57 --HELEKYPLTAGLPELRQACAN-WLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLN 113
Query: 156 ----GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST 211
G + +P + Y +++ G I + NC P +F PD +
Sbjct: 114 PVSDGIKPAIVSPNPFYQIYEGATLLGG------------GEIHFANC-PAPSFNPDWRS 160
Query: 212 TS-----RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSP 265
S RT ++F CSPNNP+G K++ + G II D Y+ Y P
Sbjct: 161 ISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKP 220
Query: 266 RSIYEIP----GAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVC 321
+ +R+ + +S SK + G+R G+ EL +K+F
Sbjct: 221 LGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAEL--------LKNFLLYRT 272
Query: 322 TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381
+ S VQ +A + Q + Y+E + ++ Q + V + Y+
Sbjct: 273 YHGSAMSIPVQRASIAAWDDE--QHVIDNRRLYQEKFERVIPILQQV-FDVKLPDASFYI 329
Query: 382 WVQFPGSSSWDVFAEILEKTHILTIPGSGF------GPGGNEHIRVSAFGHREYISEACR 435
W++ P + +K I +PG G G ++R++ +A
Sbjct: 330 WLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAE 389
Query: 436 RLKNFL 441
+ +
Sbjct: 390 DIVSLY 395
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 6e-55
Identities = 99/382 (25%), Positives = 147/382 (38%), Gaps = 51/382 (13%)
Query: 75 IRLGIG--DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG 132
I + +G T P A+A+ +L GY G ALR IA + + G
Sbjct: 34 IHMEVGQPGT--GAPRGAVEALAK---SLE--TDALGYTVALGLPALRQRIARLYGEWYG 86
Query: 133 IE--GDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189
++ + I+ G+ + L S V + P +P+Y I+ G
Sbjct: 87 VDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQ---ILRALG------L 137
Query: 190 KYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANG 247
V + PEN P + + SP NPTG + L+E A+A G
Sbjct: 138 V---PVDLPTAPENRLQPVPADFAGLDLAGLMVASPANPTGTMLDHAAMGALIEAAQAQG 194
Query: 248 SIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS 307
+ + D Y + + E+ + I+SFSK+ TG R+GW VVPE+
Sbjct: 195 ASFISDEIYHGIEYEAKAVTALEL---TDECYVINSFSKYFSMTGWRVGWMVVPEDQ--- 248
Query: 308 NGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS 367
++ RI F A + Q LA L D L+ +D YK N K++++
Sbjct: 249 -----VRVVERIAQNMFICAPHASQVAALAALDCD--AELQANLDVYKANRKLMLERLPK 301
Query: 368 LGLKV----NGGKNAPYVW--VQFPGSSSWDVFAE-ILEKTHILTIPGSGFGP-GGNEHI 419
G +G A YV+ V S FA ILEK + PG F P G +
Sbjct: 302 AGFTRIAPPDG---AFYVYADVSDLTDDSRA-FAAEILEKAGVAVTPGLDFDPERGAGTL 357
Query: 420 RVSAFGHREYISEACRRLKNFL 441
R S I E RL+ F+
Sbjct: 358 RFSYARATADIEEGLDRLEAFM 379
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 8e-53
Identities = 88/377 (23%), Positives = 147/377 (38%), Gaps = 50/377 (13%)
Query: 75 IRLGIG----DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD 130
I L IG +T P I + +L +G Y +G + LR I++ +
Sbjct: 32 IHLEIGEPDFNT----PKPIVDEGIK---SLK--EGKTHYTDSRGILELREKISELYKDK 82
Query: 131 MGIE--GDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE 187
+ D I I+ G+ L ++ V +Q+P +P Y + + G
Sbjct: 83 YKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKN---FIRFLG----- 134
Query: 188 TGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA 245
K V+ + E L + +T I SP+NP G +++ EFA
Sbjct: 135 -AK---PVFCDFTVE-----SLEEALSDKTKAIIINSPSNPLGEVID----REIYEFAYE 181
Query: 246 NGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305
N I+ D Y + + S E E I I+ FSK TG R+G+ + +E+
Sbjct: 182 NIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEI- 240
Query: 306 YSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365
I+ ++ F A I Q L + + + ++I + ++++
Sbjct: 241 -------IEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYV 293
Query: 366 QSLGLKVNGGKNAPYVWVQFPGSSSWDVFAE-ILEKTHILTIPGSGFGPGGNEHIRVSAF 424
+ G +VN A YV+ FA +L++ + PG GFG G +IR+S
Sbjct: 294 KDFGWEVNNPIGAYYVFPNIGEDG--REFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA 351
Query: 425 GHREYISEACRRLKNFL 441
E I E R+K FL
Sbjct: 352 NSYENIKEGLERIKEFL 368
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 3e-51
Identities = 109/389 (28%), Positives = 162/389 (41%), Gaps = 56/389 (14%)
Query: 75 IRLGIG----DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD 130
I LGIG DT P I E AL KG YG G + LR AIA+K K
Sbjct: 29 ISLGIGEPDFDT----PQHIKEYAKE---ALD--KGLTHYGPNIGLLELREAIAEKLKKQ 79
Query: 131 MGIE---GDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK 186
GIE EI + GA Q+ + L L V + P+F +Y V AG
Sbjct: 80 NGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP---AVILAG---- 132
Query: 187 ETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVE 241
GK V + E+ F ++ T +T + SP NPTG T + L+++ +
Sbjct: 133 --GK---PVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIAD 187
Query: 242 FAKANGSIIVYDSAYAAYITDPSP-RSIYEIPGAREVAIEISSFSK-FAGFTGVRLGWTV 299
F + I++ D Y +I D + SI + G E I ++ FSK FA TG RLG+
Sbjct: 188 FVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA-MTGWRLGFVA 246
Query: 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL-SPDGFQALRTVIDYYKENA 358
P + I+ + +Q L ++A+ + Y
Sbjct: 247 APSWI--------IERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRR 298
Query: 359 KIIVDAFQSLGLKVNGGKNAPYVWVQFP-----GSSSWDVFAE-ILEKTHILTIPGSGFG 412
K++ +GL K A Y+ FP G +S F+E +L++ + +PGS FG
Sbjct: 299 KLVWKRLNEMGLPTVKPKGAFYI---FPRIRDTGLTSKK-FSELMLKEARVAVVPGSAFG 354
Query: 413 PGGNEHIRVSAFGHREYISEACRRLKNFL 441
G ++R+S E + EA R++ L
Sbjct: 355 KAGEGYVRISYATAYEKLEEAMDRMERVL 383
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 7e-50
Identities = 69/378 (18%), Positives = 128/378 (33%), Gaps = 50/378 (13%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE 134
L + S F YG +G+ A + +++ Y ++
Sbjct: 30 SSLTLE------ELFALSGTNPEDFYKKLQGTKLNYGWIEGSPAFKKSVSQL-YTG--VK 80
Query: 135 GDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN 193
++I ++GA +++ L L+ V P++ D I G +
Sbjct: 81 PEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD---IPKSLG------AE--- 128
Query: 194 IVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGS 248
+ EN + PDL T +I + NNPTG L++LVE A G+
Sbjct: 129 VDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGA 188
Query: 249 IIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN 308
I+ D Y ++ S I + I ++S SK G+R+GW ++
Sbjct: 189 YILSDEVY-RSFSELDVPS---IIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQV---- 240
Query: 309 GYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365
C A L+ + L +EN I+
Sbjct: 241 ----TDILRDYRDYTMIC---AGVFDDLVAQLALA-HYQEILERNRHILEENLAILDQWI 292
Query: 366 QSL-GLKVNGGKNAPYVWVQFPGSSSWDVFAE-ILEKTHILTIPGSGFGPGGNEHIRVSA 423
+ + +V+ + F +L++ +L +PG+ F G ++R+
Sbjct: 293 EEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFERDG--YVRLGF 350
Query: 424 FGHREYISEACRRLKNFL 441
+E + + +L FL
Sbjct: 351 ACEQETLIKGLEKLSQFL 368
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 9e-46
Identities = 85/389 (21%), Positives = 149/389 (38%), Gaps = 47/389 (12%)
Query: 73 RLIRLGIG-------DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIAD 125
++IRL IG P+ + A + A+ +G+ YG +G LR AI +
Sbjct: 39 KVIRLNIGDPVKFDFQP----PEHMKEAYCK---AIK--EGHNYYGDSEGLPELRKAIVE 89
Query: 126 KFYKDMGIE--GDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAG 182
+ + G++ D++ ++ ++ LL + V PS+P Y +V G
Sbjct: 90 REKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTG---LVKFYG 146
Query: 183 KFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLK 237
GK V E ++ PD+ T RT I +PNNPTG + L+
Sbjct: 147 ------GK---PVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLE 197
Query: 238 KLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297
+++ A ++ D Y + S + I ++ SK TG RLG+
Sbjct: 198 EILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK-DVPVIVMNGLSKVYFATGWRLGY 256
Query: 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS-PDGFQALRTVIDYYKE 356
+ + + +R+ + Q +A L+ P + L+ + KE
Sbjct: 257 MYFVDPENKLSEV--REAIDRLARIRLC-PNTPAQFAAIAGLTGPMDY--LKEYMKKLKE 311
Query: 357 NAKIIVDAFQSL-GLKVNGGKNAPYVWV---QFPGSSSWDVFAEILEKTHILTIPGSGFG 412
I + G+ + A Y++ P + + ++L H+L + GSGFG
Sbjct: 312 RRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFG 371
Query: 413 PGGNEHIRVSAFGHREYISEACRRLKNFL 441
G H R E + EA R + F+
Sbjct: 372 EYGAGHFRAVFLPPIEILEEAMDRFEKFM 400
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 1e-45
Identities = 75/400 (18%), Positives = 139/400 (34%), Gaps = 54/400 (13%)
Query: 73 RLIRLGIGD----TTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFY 128
+I+L +GD + E + GY G+ R A+A +
Sbjct: 34 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAI----DSQECNGYFPTVGSPEAREAVATWWR 89
Query: 129 K--------DMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVG 179
I D + + G I + + + V P FP Y +
Sbjct: 90 NSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET---VCK 146
Query: 180 QAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQ 234
G + + NCRPEN++ DL +T ++ +P+NP G + +
Sbjct: 147 AYG------IG---MHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRK 197
Query: 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPSPR-----SIYEIPGAREVAIEISSFSKFAG 289
++ +V A+ + D YA + S+ + + + +K
Sbjct: 198 HVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPR-VILGGTAKNLV 256
Query: 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRIV-CTCFNGASNIVQAGGLACLSPDGFQALR 348
G RLGW + + + ++ R+ C G +VQA L + L
Sbjct: 257 VPGWRLGWLLYVDPHGNGPSF--LEGLKRVGMLVC--GPCTVVQAALGEALLNTPQEHLD 312
Query: 349 TVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWV-----QFPGSSSWDVFAE-ILEKT 401
++ +E+A + + GL + A Y+ ++ + F E +LE+
Sbjct: 313 QIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEE 372
Query: 402 HILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
++ +PG+ F G R++ E EA R+K F
Sbjct: 373 NVQVLPGTIFHAPG--FTRLTTTRPVEVYREAVERIKAFC 410
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 7e-45
Identities = 60/393 (15%), Positives = 128/393 (32%), Gaps = 54/393 (13%)
Query: 73 RLIRLGIG--DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD 130
R + G D +P P + + G + Y +G++ +R +A +
Sbjct: 40 RPVDFSHGDVDAHEPTPGAFDLF-SAGVQS----GGVQAYTEYRGDLGIRDLLAPRLAAF 94
Query: 131 MGIE---GDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK 186
G D + I+ G + + + VA+ P + A +V
Sbjct: 95 TGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRK---LVEFFE---- 147
Query: 187 ETGKYRNI-VYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLV 240
G+ + + E DL+ + + F +PNNP G + +++ ++
Sbjct: 148 --GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIA 205
Query: 241 EFAKANGSIIVYDSAYAAYITDPSP-RSIYEIPGA-REVAIEISSFSK-FAGFTGVRLGW 297
A G+ ++ D Y+ + + E + I SK + +G RLG
Sbjct: 206 ALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTES-LSGYRLGV 264
Query: 298 TVVPEELRYSNGYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYY 354
+ I ++ V A+ QA + + I +
Sbjct: 265 AFGSRAI--------IARMEKLQAIVSLR---AAGYSQAVLRGWFD-EAPGWMEDRIARH 312
Query: 355 KENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFP-----GSSSWDVFAEILEKTHILTIPG 408
+ ++ + G+ + Y+ FP + + + + ++ PG
Sbjct: 313 QAIRDELLHVLRGCEGVFARTPQAGSYL---FPRLPKLAVAPAEFVKILRLQAGVVVTPG 369
Query: 409 SGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+ F P + +R++ E A RR+ +
Sbjct: 370 TEFSPHTADSVRLNFSQDHEAAVAAARRIVTLV 402
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 1e-44
Identities = 81/391 (20%), Positives = 138/391 (35%), Gaps = 59/391 (15%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE 134
IG+ + P P I+ + GY + QG++ R AIA+ G
Sbjct: 38 YDFSIGNPSIPAPQIVNDT-IKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTH 96
Query: 135 --GDEIFISDGA-QSDISRLQMLLGSNV-TVAVQDPSFPAYIDTSVIVGQAGKFLKETGK 190
D ++++ GA S + L P FP Y V AG +
Sbjct: 97 FNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKV---FVNAAG------AR 147
Query: 191 YRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA 245
+V + E+ F D + T + SPNNP+G + + +KKL + +
Sbjct: 148 ---LVEVPADTEH-FQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEK 203
Query: 246 NGS------IIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299
I+ D Y + D + + + + S+SK G R+G+ +
Sbjct: 204 KSKEIGRPIFIIADEPYREIVYD--GIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVL 261
Query: 300 VPEELRYSNGYPVIKDFNRIVCTCFNG-------ASNIVQAGGLACL--SPDGFQALRTV 350
VP+E+ C G A ++ Q + C + D
Sbjct: 262 VPDEV--------YDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGD-------- 305
Query: 351 IDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSG 410
I+ YKEN ++ + +G A Y++V+ S F E ++ +L + G
Sbjct: 306 INAYKENRDLLYEGLTRIGYHCFKPDGAFYMFVKALEDDSNA-FCEKAKEEDVLIVAADG 364
Query: 411 FGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
FG G +R+S RE I + +
Sbjct: 365 FGCPG--WVRISYCVDREMIKHSMPAFEKIY 393
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 3e-44
Identities = 72/434 (16%), Positives = 135/434 (31%), Gaps = 76/434 (17%)
Query: 63 SEHIRKHPDARLIRLGIG--DTTQPIPDIITSAMAE-------HAFALSTVKGYKGYGAE 113
+ ++ + LG G + ++ S + Y
Sbjct: 25 GDALKSDQP--VNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNP 82
Query: 114 QGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISRLQMLLGSNV------------ 159
QG+ A A+ F + + I +++G+Q+ L L G
Sbjct: 83 QGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKS 142
Query: 160 ----TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYR-NIVYMNCRPENNFFPDLST--- 211
+ P + Y D + + F +I + E FF
Sbjct: 143 VDKSILLPLTPEYIGYSD---VHVEGQHFAA----VLPHIDEVTHDGEEGFFKYRVDFEA 195
Query: 212 --------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP 263
R I P NPTG+ T +++ L E AK ++ D+AY +
Sbjct: 196 LENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNI 255
Query: 264 SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTC 323
+ I S SK G+R G V ++ + N +V
Sbjct: 256 IYSDAH--LNWDNNTILCFSLSKIGL-PGMRTGIIVADAKVI-----EAVSAMNAVVNLA 307
Query: 324 FNGASNIVQAGGLACLSPDGFQAL--RTVIDYYKENAKIIVDA----FQSLGLKVNGGKN 377
+ A ++ D + L + +Y++ A + V L ++ +
Sbjct: 308 ---PTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEG 364
Query: 378 APYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPG--------GNEHIRVSAFGHR 427
A ++W+ F S+ D E L+ L +P F PG +E IR+S
Sbjct: 365 AIFLWLWFKDLPISTLD-LYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADE 423
Query: 428 EYISEACRRLKNFL 441
+ + + + + +
Sbjct: 424 QTLIDGIKVIGEVV 437
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 3e-43
Identities = 81/393 (20%), Positives = 144/393 (36%), Gaps = 40/393 (10%)
Query: 68 KHPDARLIRLGIGDTTQ----PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAI 123
+P+ +I L IGD T P +T AM + AL + K Y GY G ++ R I
Sbjct: 50 PNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKD---ALDSGK-YNGYAPSIGFLSSREEI 105
Query: 124 ADKFYKD-MGIEGDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQA 181
A ++ +E ++ ++ G Q+ L +L + V P F Y +
Sbjct: 106 ASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKT---LAESM 162
Query: 182 GKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQL 236
G + + N PE ++ DL +T + +P+NP G + + L
Sbjct: 163 G------IE---VKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHL 213
Query: 237 KKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEIPGAREVAIEISSFSKFAGFTGVRL 295
+K++ A I+ D Y + + + + +K G RL
Sbjct: 214 QKILAVAARQCVPILADEIYGDMVFSDCKYEPLATL-STDVPILSCGGLAKRWLVPGWRL 272
Query: 296 GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYK 355
GW ++ + I+D + G IVQ + L + + + K
Sbjct: 273 GWILIHDRRDIFGNE--IRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLK 330
Query: 356 ENAKIIVDAFQSL-GLKVNGGKNAPYVWV-----QFPG-SSSWDVFAEILEKTHILTIPG 408
NA + A ++ GL+ A Y+ V FP + + ++ + + +P
Sbjct: 331 SNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPA 390
Query: 409 SGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+ F IRV + EAC R++ F
Sbjct: 391 TCFEYPN--FIRVVITVPEVMMLEACSRIQEFC 421
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 6e-42
Identities = 75/413 (18%), Positives = 139/413 (33%), Gaps = 54/413 (13%)
Query: 60 MRESEHIRKHPDARLIRLGIG--DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNM 117
M + + P A I LG G + D + + + + Y QG
Sbjct: 21 MEDLNDGLRTPGA--IMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKT 78
Query: 118 ALRTAIADKFYKDMGIE--GDEIFISDGAQS--DISRLQMLLG------SNVTVAVQDPS 167
AL A+A + +G + I +++G+QS + G + + P
Sbjct: 79 ALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYL-FNLFAGRRADGSTKKVLFPLAPE 137
Query: 168 FPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-----LSTTSRTDIIFFCS 222
+ Y D+ + F+ + PE F L T +I
Sbjct: 138 YIGYADSG---LEDDLFVSARPNIELL------PEGQFKYHVDFEHLHIGEETGMICVSR 188
Query: 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEIS 282
P NPTG+ T ++L KL A + +V D+AY P I
Sbjct: 189 PTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR--PLWNPNIILCM 246
Query: 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL-SP 341
S SK G R G + ++ I + N I+ + A +
Sbjct: 247 SLSKLGL-PGSRCGIIIANDKTI-----TAIANMNGIISLA---PGGMGPAMMCEMIKRN 297
Query: 342 DGFQALRTVI-DYYKENAKIIVDAFQS----LGLKVNGGKNAPYVWVQFP-GSSSWDVFA 395
D + TVI +Y + + + + ++ + A ++W+ F + ++
Sbjct: 298 DLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLY 357
Query: 396 EILEKTHILTIPGSGFGPG-------GNEHIRVSAFGHREYISEACRRLKNFL 441
+ L+ +L +PG F PG ++ +R++ + I + L +
Sbjct: 358 QRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEI 410
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 1e-41
Identities = 70/385 (18%), Positives = 132/385 (34%), Gaps = 49/385 (12%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE 134
L IG PD+ T + Y G LR A A + + ++
Sbjct: 46 HHLNIGQ-----PDLKTPEVFFER-IYENKPEVVYYSHSAGIWELREAFASYYKRRQRVD 99
Query: 135 --GDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191
+ + +++G ++ + ++ + V +P + Y AG K
Sbjct: 100 VKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNA---FAKIAG------VK- 149
Query: 192 RNIVYMNCRPENNF-FPDL---STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANG 247
++ + R E F P RT I +P NPTG +++ LVE A+ +G
Sbjct: 150 --LIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHG 207
Query: 248 SIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSK-FAGFTGVRLGWTVVPEELRY 306
++ D Y+ + S I + + I S SK F+ G R+G + E
Sbjct: 208 LFLIVDEVYSEIVFRGEFASALSIESDK--VVVIDSVSKKFS-ACGARVGCLITRNE--- 261
Query: 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366
+ + + Q G + L+ V + Y+E + ++ +
Sbjct: 262 -----ELISHAMKLAQGRLAPPLLEQIGSVGLLN-LDDSFFDFVRETYRERVETVLKKLE 315
Query: 367 SL-GLKVNGGKNAPYVWVQFPGSSSWDVFAEIL------EKTHILTIPGSGFGPG---GN 416
+ A Y+ + P + + FA + + + P GF G
Sbjct: 316 EHGLKRFTKPSGAFYITAELPVEDA-EEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGK 374
Query: 417 EHIRVSAFGHREYISEACRRLKNFL 441
+ IR++ ++ +S A L L
Sbjct: 375 KEIRIACVLEKDLLSRAIDVLMEGL 399
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 149 bits (380), Expect = 3e-41
Identities = 90/385 (23%), Positives = 152/385 (39%), Gaps = 60/385 (15%)
Query: 75 IRLGIG----DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD 130
I L G T P+ + A KG Y +G LR IA + +
Sbjct: 44 INLTAGEPDFPT----PEPVVEE-AVRFLQ----KGEVKYTDPRGIYELREGIAKRIGER 94
Query: 131 MGIE--GDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE 187
+ D++ +++GA Q+ + LL V V P + +YI + AG
Sbjct: 95 YKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIP---QIILAG----- 146
Query: 188 TGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEF 242
G + + NF P L +T + SPNNPTG + L+ LV
Sbjct: 147 -GT---VNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRL 202
Query: 243 AKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSK-FAGFTGVRLGWTVVP 301
AK I+ D Y + + SI ++ + + I+ FSK + TG R+G+ +
Sbjct: 203 AKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHS-MTGWRVGYLISS 261
Query: 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDY----YKEN 357
E++ ++I + + + Q L AL Y +KE
Sbjct: 262 EKV--------ATAVSKIQSHTTSCINTVAQYAALK--------ALEVDNSYMVQTFKER 305
Query: 358 AKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAE-ILEKTHILTIPGSGFGPGGN 416
+V+ + +G+K + A Y++ + G F E +LE+ + +PGS F G
Sbjct: 306 KNFVVERLKKMGVKFVEPEGAFYLFFKVRGDD--VKFCERLLEEKKVALVPGSAFLKPG- 362
Query: 417 EHIRVSAFGHREYISEACRRLKNFL 441
+R+S E ++EA R+++FL
Sbjct: 363 -FVRLSFATSIERLTEALDRIEDFL 386
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 4e-40
Identities = 80/417 (19%), Positives = 139/417 (33%), Gaps = 62/417 (14%)
Query: 65 HIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHA------FALSTVKGYKGYGAEQGNMA 118
H K+P+ +I++G+ + Q D+I + + + + K + G
Sbjct: 30 HPLKNPN-GVIQMGLAEN-QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPE 87
Query: 119 LRTAIADKFYKDMG----IEGDEIFISDGAQSDISRLQM-LLGSNVTVAVQDPSFPAYID 173
R AIA K G + + + ++ GA + L V P +PA+
Sbjct: 88 FRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR 147
Query: 174 TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-----------LSTTSRTDIIFFCS 222
++ ++C NNF + + + +
Sbjct: 148 DLRWRTGV-----------QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTN 196
Query: 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIE- 280
P+NP G LK ++ F + +V D YAA + P SI EI +E+
Sbjct: 197 PSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCN 256
Query: 281 ------ISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAG 334
+ S SK G G R+G YS V+ ++ + F S Q
Sbjct: 257 KDLVHIVYSLSKDMGLPGFRVGII-------YSFNDDVVNCARKM--SSFGLVSTQTQYF 307
Query: 335 GLACLSPDGF--QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP------ 386
A LS + F LR + K + + +G+K + W+
Sbjct: 308 LAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRES 367
Query: 387 -GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS-AFGHREYISEACRRLKNFL 441
S ++ I+ + PGS F RV A + A R++ F+
Sbjct: 368 TFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFV 424
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 6e-40
Identities = 85/464 (18%), Positives = 147/464 (31%), Gaps = 100/464 (21%)
Query: 57 EISMRESEHIRKHPDARLIRLGIGDTTQ----PI------------PDIITSAMAEHAF- 99
+ + P ++ IG+ P+ PD++ + F
Sbjct: 49 RLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIKTLFS 108
Query: 100 -----------ALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD--EIFISDGAQS 146
A+ + Y QG LR AIA G + +IF++DGA
Sbjct: 109 ADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASP 168
Query: 147 DISR-LQMLL-GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENN 204
+ +Q+L+ + V P +P Y + + G G +V
Sbjct: 169 GVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHG---------GA---LVPYYLNESTG 216
Query: 205 FFPDL-----------STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYD 253
+ + S + +P NPTG + +V+F K G +++ D
Sbjct: 217 WGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLAD 276
Query: 254 SAYAAYITDP-----SPRSIYEIPGAREVAIEISSF---SK-FAGFTGVRLGWTVVPEEL 304
Y I S + I G E + + S+ SK + G G R G+ +
Sbjct: 277 EVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEIT--- 333
Query: 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP---------DGFQALRTVIDYYK 355
+++ + + ++ Q ++P ++
Sbjct: 334 ---GFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLA 390
Query: 356 ENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFP---------------GSSSWDVFAE-IL 398
AK + AF L G+ N + A YV FP + +A +L
Sbjct: 391 RRAKALEHAFNKLEGITCNEAEGAMYV---FPQICLPQKAIEAAKAANKAPDAFYALRLL 447
Query: 399 EKTHILTIPGSGFGPGGNE-HIRVSAFGHREYISEACRRLKNFL 441
E T I+ +PGSGFG H R + + I R F
Sbjct: 448 ESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFH 491
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-37
Identities = 77/409 (18%), Positives = 131/409 (32%), Gaps = 62/409 (15%)
Query: 75 IRLGIG------DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFY 128
I++G+ D + A A S + G A + A+ D
Sbjct: 41 IQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMA 100
Query: 129 KDMG----IEGDEIFISDGAQSDISRLQM-LLGSNVTVAVQDPSFPAYIDTSVIVGQAGK 183
+ G + + + ++ GA S L V + P +P +
Sbjct: 101 EIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGV-- 158
Query: 184 FLKETGKYRNIVYMNCRPENNF-----------FPDLSTTSRTDIIFFCSPNNPTGHAAT 232
IV ++C N F R + +P+NP G T
Sbjct: 159 ---------EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMT 209
Query: 233 WQQLKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEI---------PGAREVAIEIS 282
+L L+ F + G ++ D Y+ + PS S+ E+ + +
Sbjct: 210 RNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVY 269
Query: 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD 342
S SK G G R+G YSN V+ ++ + F S+ Q A LS
Sbjct: 270 SLSKDLGLPGFRVGAI-------YSNDDMVVAAATKM--SSFGLVSSQTQHLLSAMLSDK 320
Query: 343 GF--QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP-------GSSSWDV 393
+ K+ K +V Q G+ G + WV + ++
Sbjct: 321 KLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMEL 380
Query: 394 FAEILEKTHILTIPGSGFGPGGNEHIRVS-AFGHREYISEACRRLKNFL 441
+ +I+ + H+ PGS RV A + A +RLK F+
Sbjct: 381 WKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFV 429
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 138 bits (348), Expect = 1e-36
Identities = 63/416 (15%), Positives = 107/416 (25%), Gaps = 101/416 (24%)
Query: 75 IRLGIGDTTQPIPDIITSA-MAEHAFALSTVKGYK--GYGAEQGNM----ALRTAIADKF 127
+ GD + + V + Y + L I +
Sbjct: 59 ADVASGD-----GLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIK-EL 112
Query: 128 YKDMG---IEGDEIFISDGAQSDISRLQMLLGSNVT---------VAVQDPSFPAYIDTS 175
++ +G + I G I L + L N+T V P +P +
Sbjct: 113 HEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVF---- 168
Query: 176 VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-----STTSRTDIIFFCSPNNPTGHA 230
R + + + + I SPNNP G
Sbjct: 169 ----------------REQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGL- 211
Query: 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290
+ A G +YD Y Y +P I + I + + SKF G
Sbjct: 212 ---------LRHAVIKGCKSIYDMVY--YWPHYTP-----IKYKADEDILLFTMSKFTGH 255
Query: 291 TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS---------- 340
+G R GW ++ +E V + + G Q L L
Sbjct: 256 SGSRFGWALIKDE-------SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQK 308
Query: 341 PDGFQALRTVIDYYKENAKIIVDAFQSLG---------------LKVNGGKNAPYVWVQF 385
+E I + + Y WV+
Sbjct: 309 GTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKC 368
Query: 386 PGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
D + + I T G GF ++R+S ++ + LK+ +
Sbjct: 369 EWEEDKDC-YQTFQNGRINTQNGVGFEASS-RYVRLSLIKTQDDFDQLMYYLKDMV 422
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 2e-36
Identities = 94/387 (24%), Positives = 151/387 (39%), Gaps = 58/387 (14%)
Query: 75 IRLGIG----DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD 130
+ L G DT P+ + A A A A +G Y G LR A+A+KF ++
Sbjct: 34 VALTAGEPDFDT----PEHVKEA-ARRALA----QGKTKYAPPAGIPELREALAEKFRRE 84
Query: 131 MGIE--GDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE 187
G+ +E ++ G Q+ + Q +L V V P + +Y + +V AG
Sbjct: 85 NGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPE---MVRFAG----- 136
Query: 188 TGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEF 242
G +V + PE F PD T RT + SPNNPTG + L+ L
Sbjct: 137 -GV---VVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARL 192
Query: 243 AKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSK-FAGFTGVRLGWTVVP 301
A + +V D Y + + S + + ++ +K FA TG R+G+ P
Sbjct: 193 AVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEH--TLTVNGAAKAFA-MTGWRIGYACGP 249
Query: 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDY----YKEN 357
+E+ IK + I Q L L+ +A R ++ Y+
Sbjct: 250 KEV--------IKAMASVSRQSTTSPDTIAQWATLEALT--NQEASRAFVEMAREAYRRR 299
Query: 358 AKIIVDAFQSLGLKVNGGKNAPYVWV---QFPGSSSWDVFAEILEKTHILTIPGSGFGPG 414
++++ +LGLK A YV + AE L + + +PG+ F
Sbjct: 300 RDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDE--VRAAERLLEAGVAVVPGTDFAAF 357
Query: 415 GNEHIRVSAFGHREYISEACRRLKNFL 441
G H+R+S E + +A R L
Sbjct: 358 G--HVRLSYATSEENLRKALERFARVL 382
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-35
Identities = 83/430 (19%), Positives = 145/430 (33%), Gaps = 86/430 (20%)
Query: 73 RLIRLGIGDTTQPIPDIITSAM--AEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD 130
+++ L P A A Y A QG +R +A +
Sbjct: 86 QVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRR 145
Query: 131 MGIEG---DEIFISDGAQSDISR-LQMLL----GSNVTVAVQDPSFPAYIDTSVIVGQAG 182
G D I+++ GA IS L++L+ S V + P +P Y +
Sbjct: 146 DGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELD--- 202
Query: 183 KFLKETGKYRNIVYMNCRPENNFFPDL-----STTSRTD-----IIFFCSPNNPTGHAAT 232
V EN + ++ + D ++ +P NPTG +
Sbjct: 203 ------AIQ---VNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQS 253
Query: 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDP-----SPRSIYEIPGA----REVAIEISS 283
+ ++ ++ FA ++ D Y + P S + + G S
Sbjct: 254 RKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHS 313
Query: 284 FSK-FAGFTGVRLGWTVVPEELRYSNGYPVIKD-FNRI--VCTCFNGASNIVQAGGLACL 339
SK + G G R G+ V N +P IK ++ V C + + +
Sbjct: 314 TSKGYMGECGYRGGYMEV------INLHPEIKGQLVKLLSVRLC----PPVSGQAAMDIV 363
Query: 340 ---------SPDGFQA-LRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFP-- 386
S + F +V+ + AK+ D F + G+ N + A Y FP
Sbjct: 364 VNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYA---FPRI 420
Query: 387 -------------GSSSWDVFA-EILEKTHILTIPGSGFG-PGGNEHIRVSAFGHREYIS 431
+ + ++LE+T I +PGSGFG G H R++ E +
Sbjct: 421 FIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLK 480
Query: 432 EACRRLKNFL 441
+++K+F
Sbjct: 481 TVLQKVKDFH 490
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-34
Identities = 83/404 (20%), Positives = 148/404 (36%), Gaps = 55/404 (13%)
Query: 55 FPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQ 114
F ++S +H A I L G PD + A +G Y
Sbjct: 20 FTQMSALAQQH-----QA--INLSQG-----FPDFDGPRYLQERLAHHVAQGANQYAPMT 67
Query: 115 GNMALRTAIADKFYKDMGIEGD---EIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPA 170
G ALR AIA K + G + D +I ++ GA ++ + + L+ + V DPS+ +
Sbjct: 68 GVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDS 127
Query: 171 YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNN 225
Y + G G + M +P +F D + RT ++ +P+N
Sbjct: 128 YAPAIALSG---------GI---VKRMALQP-PHFRVDWQEFAALLSERTRLVILNTPHN 174
Query: 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEIPGAREVAIEISSF 284
P+ L + + ++ D Y S+ P RE A+ +SSF
Sbjct: 175 PSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSF 234
Query: 285 SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS--PD 342
K TG ++G+ V P + S + + + Q L P+
Sbjct: 235 GKTYHMTGWKVGYCVAPAPI--SAEIRKVHQYL-TFS-----VNTPAQLALADMLRAEPE 286
Query: 343 GFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWV---QFPGSSSWDVFAE-IL 398
+ AL D+Y++ I+V+A L++ + ++ V + F + +
Sbjct: 287 HYLALP---DFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVE-FCQWLT 342
Query: 399 EKTHILTIPGSGFG--PGGNEHIRVSAFGHREYISEACRRLKNF 440
++ + IP S F P ++ IR+ + A RL+
Sbjct: 343 QEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 386
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 3e-34
Identities = 84/413 (20%), Positives = 139/413 (33%), Gaps = 60/413 (14%)
Query: 55 FPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQ 114
F E+S + A + LG G PD A + G Y
Sbjct: 15 FAEMSALATRI-----GA--VNLGQG-----FPDEDGPPKMLQAAQDAIAGGVNQYPPGP 62
Query: 115 GNMALRTAIADKFYKDMGIEGD---EIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPA 170
G+ LR AIA + + G++ D E+ ++ GA ++ + + L+ V + +P + +
Sbjct: 63 GSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDS 122
Query: 171 YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDLST-----TSRTDIIFFCSPN 224
Y + G V + P+ F D T RT + SP+
Sbjct: 123 YSPVVAMAG---------AH---RVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPH 170
Query: 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEIPGAREVAIEISS 283
NPTG + +L + E A A +++ D Y + D + + G E I ISS
Sbjct: 171 NPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISS 230
Query: 284 FSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL-SPD 342
+K TG ++GW P EL G K + + G + Q L + D
Sbjct: 231 AAKMFNCTGWKIGWACGPAEL--IAGVRAAKQY-----LSYVGGAPF-QPAVALALDTED 282
Query: 343 GFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWD--VFAE-ILE 399
+ + + + + + +G V+ ++ D F + E
Sbjct: 283 AW--VAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPLGYDDSTEFCAALPE 340
Query: 400 KTHILTIPGSGFGPGGNEHIRVSAFGHREYI-----------SEACRRLKNFL 441
K + IP S F A + EA RRL
Sbjct: 341 KVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLA 393
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 5e-33
Identities = 92/385 (23%), Positives = 156/385 (40%), Gaps = 51/385 (13%)
Query: 75 IRLGIG----DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD 130
G +T P I A AL +G YG G LR AIA K +D
Sbjct: 33 CSFSAGEPDFNT----PKHIVEAAKA---ALE--QGKTRYGPAAGEPRLREAIAQKLQRD 83
Query: 131 MGIE--GDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE 187
G+ D I +++G QS + + ++ V + P + +Y + +V A
Sbjct: 84 NGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPE---MVKLAE----- 135
Query: 188 TGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEF 242
G V + E F T +T ++ F +P+NPTG T +++ + +
Sbjct: 136 -GT---PVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQV 191
Query: 243 AKANGSIIVYDSAYAAYITDPSP-RSIYEI-PGAREVAIEISSFSK-FAGFTGVRLGWTV 299
A G ++ D Y + D + SI P A E ++ S F+K +A TG R+G+
Sbjct: 192 AVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA-MTGWRVGFLA 250
Query: 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAK 359
P L +K +I + Q G +A ++ ++ + E +
Sbjct: 251 GPVPL--------VKAATKIQGHSTSNVCTFAQYGAIAAYENSQ-DCVQEMLAAFAERRR 301
Query: 360 IIVDAFQSL-GLKVNGGKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGN 416
++DA ++ GL+ A Y++ SS D +E+L++ + T+PG+ FG
Sbjct: 302 YMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADD- 360
Query: 417 EHIRVSAFGHREYISEACRRLKNFL 441
IR+S + I RL+ FL
Sbjct: 361 -CIRLSYATDLDTIKRGMERLEKFL 384
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 8e-32
Identities = 65/404 (16%), Positives = 120/404 (29%), Gaps = 83/404 (20%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKG---YKGYGAEQGNMA------LRTAIAD 125
+ L GD P + + Y ++ N+ L AI D
Sbjct: 25 VNLDHGD-----PTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKD 79
Query: 126 KF--YKDMGIEGDEIFISDGAQSDISRLQMLLGSN-----VTVAVQDPSFPAYIDTSVIV 178
+ E I + G+ L S V+V P + Y++ + V
Sbjct: 80 LHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYV 139
Query: 179 GQAGKFLKETGKYRNIVYMNCRPENNFFPDLS--TTSRTDIIFFCSPNNPTGHAATWQQL 236
+ D I SPNNP G
Sbjct: 140 R--------------------SGMYKWEGDAWGFDKKGPYIELVTSPNNPDGTI-----R 174
Query: 237 KKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296
+ +V + + +++D AY P I ++ I + +FSK G G R+G
Sbjct: 175 ETVVNRPDDDEAKVIHDFAYYWPHYTP-------ITRRQDHDIMLFTFSKITGHAGSRIG 227
Query: 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS--PDGFQALRTVIDYY 354
W +V ++ V K + G S Q L+ + ++ +++
Sbjct: 228 WALVKDKE-------VAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFF 280
Query: 355 KENAKIIVDAFQSLG--LKVNGGKNAP--------YVWVQFPGSSSW--------DVFAE 396
K +++ + ++ L +K + P Y ++
Sbjct: 281 KYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVS 340
Query: 397 ILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440
L + +++ G G H+RVS + + RL N
Sbjct: 341 ELRRHKVMSRAGERCGSDKK-HVRVSMLSREDVFNVFLERLANM 383
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-31
Identities = 84/381 (22%), Positives = 149/381 (39%), Gaps = 54/381 (14%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE 134
+ LG G + P P + A+ + Y G ALR A+A++F +E
Sbjct: 28 VNLGQGFPSNPPPPFLLEAVRRA------LGRQDQYAPPAGLPALREALAEEF----AVE 77
Query: 135 GDEIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN 193
+ + ++ GA ++ LQ L+G V V +P F Y+ + + G K
Sbjct: 78 PESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAG---------AK--- 125
Query: 194 IVYMNCRP-ENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANG 247
+ F DLS T RT + +P NPTG ++L+ + A+A+
Sbjct: 126 ARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHD 185
Query: 248 SIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSK-FAGFTGVRLGWTVVPEELRY 306
++ D Y PR + A E + S K TG R+GW V P+E
Sbjct: 186 LFLISDEVYDELYYGERPRRL--REFAPERTFTVGSAGKRLE-ATGYRVGWIVGPKEF-- 240
Query: 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL----SPDGFQALRTVIDYYKENAKIIV 362
++ + T F+ + + QAG L ++ALR + Y+ ++
Sbjct: 241 MPRLAGMRQW-----TSFSAPTPL-QAGVAEALKLARREGFYEALR---EGYRRRRDLLA 291
Query: 363 DAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGF--GPGGNEHIR 420
+++GL+V + ++ + PG ++ ++E+ + IP S F + R
Sbjct: 292 GGLRAMGLRVYVPEGTYFLMAELPGWDAF----RLVEEARVALIPASAFYLEDPPKDLFR 347
Query: 421 VSAFGHREYISEACRRLKNFL 441
+ E + A RL +
Sbjct: 348 FAFCKTEEELHLALERLGRVV 368
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-31
Identities = 70/402 (17%), Positives = 137/402 (34%), Gaps = 52/402 (12%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE 134
+ LG G P +A+A A + Y G+ L A++ + + +
Sbjct: 40 LNLGQGFPDYHAPKYALNALAAAANSPD--PLANQYTRGFGHPRLVQALSKLYSQLVDRT 97
Query: 135 GD---EIFISDGAQSDI-SRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGK 190
+ E+ ++ GA + + +Q + V + +P F Y G +F+
Sbjct: 98 INPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIP---- 153
Query: 191 YRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA 245
+ ++ D + +T +I +P+NP G +L+ + K
Sbjct: 154 LKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKK 213
Query: 246 NGSIIVYDSAYAAYITDPSP-RSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304
+ V D Y + +P I +PG E I I S K TG ++GW PE L
Sbjct: 214 WNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEAL 273
Query: 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAK----- 359
++ + A+ I +A +A + L++ Y+ +
Sbjct: 274 --LKNLQMVHQN-----CVYTCATPIQEA--IAVGFETELKRLKSPECYFNSISGELMAK 324
Query: 360 --IIVDAFQSLGLKV---NGG----------KNAPYVWVQFPGSSSWDVFAE-ILEKTHI 403
+ +G+ GG + + + + F + + + +
Sbjct: 325 RDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYR-FTKWMTKSVGL 383
Query: 404 LTIPGSGFGPGGNEH-----IRVSAFGHREYISEACRRLKNF 440
IP S F N+H +R F E + +A L+ +
Sbjct: 384 QGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKW 425
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 74/411 (18%), Positives = 140/411 (34%), Gaps = 72/411 (17%)
Query: 75 IRLGIG--DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG 132
+ LG G D P + +++ AF Y G+ AL A++ + K
Sbjct: 26 VNLGQGFPDI--SPPSYVKEELSKAAFI----DNMNQYTRGFGHPALVKALSCLYGKIYQ 79
Query: 133 IEGD---EIFISDGAQSDI-SRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKET 188
+ D EI ++ GA + + +Q L+ V + P + Y + G
Sbjct: 80 RQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAG--------- 130
Query: 189 GKYRNIVYMNCRPE---------NNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQ 234
V++ R + +++ D +S+T I +P+NP G T Q
Sbjct: 131 AV---PVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQ 187
Query: 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEIPGAREVAIEISSFSKFAGFTGV 293
+L+ + + + ++ + D Y + I +PG E I I S K TG
Sbjct: 188 ELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGW 247
Query: 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDY 353
+LGW++ P L ++ + + A+ + QA + + Y
Sbjct: 248 KLGWSIGPAHL--IKHLQTVQQN-----SFYTCATPL-QAALAEAFW-IDIKRMDDPECY 298
Query: 354 YKENAK-------IIVDAFQSLGLKV---NGG-------KNAPYVWVQFPGSSSWDV-FA 395
+ K +V S+GLK +GG + +D F
Sbjct: 299 FNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFV 358
Query: 396 E-ILEKTHILTIPGSGFGPGGNEH-----IRVSAFGHREYISEACRRLKNF 440
+ + + + IP S F ++ +R + A + +
Sbjct: 359 KWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAW 409
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 75/404 (18%), Positives = 140/404 (34%), Gaps = 54/404 (13%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKG--YGAEQGNMALRTAIADKFYKDMG 132
+ LG G PD A AF + + Y G L +A F + +G
Sbjct: 31 VNLGQG-----FPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLG 85
Query: 133 IEGD---EIFISDGAQSDI-SRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKET 188
E D + ++ G + + Q L+ V + +P F Y +++ G G+ + +
Sbjct: 86 QEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAG--GRPVFVS 143
Query: 189 GKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFA 243
K I +N+ D TSRT + +PNNP G + ++L+ +
Sbjct: 144 LKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLC 203
Query: 244 KANGSIIVYDSAYAAYITDPSPR-SIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302
+ + + + D Y + D SI +PG E + I S K TG ++GW + P+
Sbjct: 204 QQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD 263
Query: 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE-----N 357
+ + + F+ + QA R Y+ +
Sbjct: 264 HI--MKHLRTVHQN-----SVFHCPTQS-QAAVAESFE-REQLLFRQPSSYFVQFPQAMQ 314
Query: 358 AK--IIVDAFQSLGLKV---NGG---------KNAPYVWVQFPGSSSWDV-FAE-ILEKT 401
++ + QS+GLK G + +D F + +++
Sbjct: 315 RCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNK 374
Query: 402 HILTIPGSGF-----GPGGNEHIRVSAFGHREYISEACRRLKNF 440
++ IP S F + +IR + +L+ +
Sbjct: 375 GLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKW 418
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 4e-29
Identities = 80/402 (19%), Positives = 133/402 (33%), Gaps = 54/402 (13%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE 134
I LG G + P + Y +G +L ++ + E
Sbjct: 60 INLGQGFFSYSPPQFAIKEAQKALDI----PMVNQYSPTRGRPSLINSLIKLYSPIYNTE 115
Query: 135 GD--EIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191
+ ++ GA + +S L LL + V V +P F YI + G GK +
Sbjct: 116 LKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCG--GKVVYVPINP 173
Query: 192 RNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKAN 246
+ + D TS+T + +P+NP G T ++L L +
Sbjct: 174 PKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKH 233
Query: 247 GSIIVYDSAYAAYITDPSP-RSIYEIPGAREVAIEISSFSK-FAGFTGVRLGWTV-VPEE 303
+I+ D Y S R P ++ + + S K FA TG R+GW + + E
Sbjct: 234 NVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFA-ATGWRIGWVLSLNAE 292
Query: 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQ---AGGLACLSPDG-FQALRTVIDYYKENAK 359
L + CF S +Q A + G F+ +R Y K
Sbjct: 293 L--LSYAAKAHTRI-----CFASPS-PLQEACANSINDALKIGYFEKMR---QEYINKFK 341
Query: 360 IIVDAFQSLGLKVN---G-----------GKNAPYVWVQFPGSSSWDV-FAE-ILEKTHI 403
I F LGL G Y + + + D + ++ + +
Sbjct: 342 IFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGV 401
Query: 404 LTIPGSGFGPGGNEH-----IRVSAFGHREYISEACRRLKNF 440
+ IP + F +E +R + Y+ A RLK
Sbjct: 402 VAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKLL 443
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 79/443 (17%), Positives = 143/443 (32%), Gaps = 103/443 (23%)
Query: 75 IRLGIG----DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK- 129
+ D + +++ + + Y + + I ++
Sbjct: 107 LSYVRDQLGLDPAAFLHEMVDGILGCN------------YPVPPRMLNISEKIVRQYIIR 154
Query: 130 DMGIEGD-----EIFISDGAQSDISRLQMLLGSNVT------VAVQDPSFPAYIDTSVIV 178
+MG + +F +G + ++ + L N VA+ P F YI+ I
Sbjct: 155 EMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIE---IP 211
Query: 179 GQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATW 233
A L+ V +N P N+ S I F +P+NP
Sbjct: 212 ELAQYALE-------EVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQ 264
Query: 234 QQLKKLVEFAKANGS--IIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291
+ L+++ + +I+ D Y + D +S++ I E + + SFSK+ G T
Sbjct: 265 RSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQSLFAI--CPENTLLVYSFSKYFGAT 320
Query: 292 GVRLGWTVVPEEL-------------------RYSNGYPVIKDFNRIVCTCFNG-ASNIV 331
G RLG ++ RY + P ++ I + A +
Sbjct: 321 GWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALN 380
Query: 332 QAGGLACLSP-----DGFQALRTVIDYYKENAKIIVDA-----FQSLGLKV--NGGKNAP 379
GL+ AL D YK K ++ ++ LG+ +
Sbjct: 381 HTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLRDENAVDY 440
Query: 380 YVWVQFPG-----------------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS 422
Y + SS+ D+ I ++T I+ +PG GFG R S
Sbjct: 441 YTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFG-SNRPSGRAS 499
Query: 423 ----AFGHREYISEACRRLKNFL 441
I A R++ + L
Sbjct: 500 LANLNEYEYAAIGRALRKMADEL 522
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 54/317 (17%), Positives = 102/317 (32%), Gaps = 41/317 (12%)
Query: 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDTSV 176
L A+A + I +G I + L + P F Y
Sbjct: 63 HLHQALARHH----QVPASWILAGNGETESIFTVASGLKPRRAMIVT--PGFAEYGRALA 116
Query: 177 IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST----TSRTDIIFFCSPNNPTGHAAT 232
G I + R + + + T D +F C+PNNPTG
Sbjct: 117 QSG------------CEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPE 164
Query: 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292
L+ + + K+ ++ D A+ + I + + + + S +KF G
Sbjct: 165 RPLLQAIADRCKSLNINLILDEAFIDF-IPHETGFIPALKDNPHIWV-LRSLTKFYAIPG 222
Query: 293 VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVID 352
+RLG+ V ++ + R ++ + + G L + +
Sbjct: 223 LRLGYLVNSDDA-------AMARMRR-QQMPWS-VNALAALAGEVALQDSAW--QQATWH 271
Query: 353 YYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGF 411
+ +E A L L V G+ A Y+ ++ D+ +L + IL + +
Sbjct: 272 WLREEGARFYQALCQLPLLTVYPGR-ANYLLLRCEREDI-DLQRRLLTQ-RILIRSCANY 328
Query: 412 GPGGNEHIRVSAFGHRE 428
+ + RV A
Sbjct: 329 PGLDSRYYRV-AIRSAA 344
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 56/320 (17%), Positives = 110/320 (34%), Gaps = 51/320 (15%)
Query: 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYID 173
+ L++ +A K+ ++ + I I G+ I L S +F Y
Sbjct: 66 SMIELKSTLAQKY----KVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEI 121
Query: 174 TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL------STTSRTDIIFFCSPNNPT 227
+ G K D + +IF C PNNP
Sbjct: 122 YAKQCG---------AKCYKT------QSITHNLDEFKKLYETHKDEIKLIFLCLPNNPL 166
Query: 228 GHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDPSPRSIY---EIPGAREVAIEIS 282
G + EF K ++V D+AY + + + E+ + + +
Sbjct: 167 G---ECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLG 223
Query: 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD 342
+FSK G G+R+G+ + +I F + + FN SN+ +A + D
Sbjct: 224 TFSKLYGLGGLRIGYGIANAN--------IISAFYK-LRAPFN-VSNLALKAAVAAMDDD 273
Query: 343 GFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTH 402
F ++ ++ + + +K+ ++ F +S D+ ++L+K
Sbjct: 274 EF--TEKTLENNFSQMELYKEFAKKHNIKIIDSY-TNFITYFFDEKNSTDLSEKLLKKG- 329
Query: 403 ILTIPGSGFGPGGNEHIRVS 422
I+ +G IR++
Sbjct: 330 IIIRNLKSYGL---NAIRIT 346
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 7e-27
Identities = 53/324 (16%), Positives = 103/324 (31%), Gaps = 66/324 (20%)
Query: 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSD--ISRL-QMLLGSNVTVAVQDPSFPAYIDT 174
L +A +E I ++ G S I + + + + ++
Sbjct: 55 MLGNKLAAHH----QVEAPSILLTAG--SSEGIRAAIEAYASLEAQLVIPELTYGDGEHF 108
Query: 175 SVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDL-----STTSRTD--IIFFCSPNNP 226
+ I G K + N+ D+ + + + I++ +PNNP
Sbjct: 109 AKIAG---------MKVTKV------KMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNP 153
Query: 227 TGHAATWQQLKKLVEFAKANGS--IIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISS 283
TG T + + + + + + D AYA ++ DP I E I + +
Sbjct: 154 TG---TITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKT 210
Query: 284 FSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG 343
FSK G+R+G+ V + I R + LA ++
Sbjct: 211 FSKIHAMAGMRVGYAVAHPTV--------IALMGR-YVAGEK-INFSGVDAALASMNDSA 260
Query: 344 FQALRTVIDYYKENAKIIVDAFQSLGLKV-----NGGKNAPYVWVQFPGSSSWDVFAEIL 398
F + + +I++ A + L L N +V+ Q D +
Sbjct: 261 F--ITYSKKSNDVSRQILLKALEDLKLPYLPSEGN------FVFHQLVVPLK-DYQTHMA 311
Query: 399 EKTHILTIPGSGFGPGGNEHIRVS 422
+ +L P + R+S
Sbjct: 312 DA-GVLIGRA---FPPADNWCRIS 331
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 50/402 (12%), Positives = 118/402 (29%), Gaps = 60/402 (14%)
Query: 75 IRLGIG----DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFY-K 129
IG + + + F T Y QG LR K
Sbjct: 50 YNATIGMATNKDGKMFASSL-----DAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRD 104
Query: 130 DMGIEGD---EIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFL 185
+ + D +++ + + + T+ + + ++ Y +
Sbjct: 105 NPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL---VFNTRNGA- 160
Query: 186 KETGKYRNIVYMNCRPENNF---FPDL-----STTSRTDIIFFCSPNNPTGHAATWQQLK 237
+ + + L S I+ PNNPTG+ T +++
Sbjct: 161 --------NLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVT 212
Query: 238 KLVEFAKANGS-----IIVYDSAYAAYI-----TDPSPRSIYEIPGAREVAIEISSFSKF 287
+VE KA + I V D AY T ++ + + I + +K
Sbjct: 213 TIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKE 272
Query: 288 AGFTGVRLGW-TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS-PDGFQ 345
G R+G+ T + + ++ + + Q+ L F
Sbjct: 273 FFAWGFRVGFMTFGTSDQTTKE--VLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFD 330
Query: 346 A-----LRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEK 400
++T+ + Y+ +++ + + ++ ++ + +++K
Sbjct: 331 KEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHDVDPEALRKHLIDK 390
Query: 401 THILTIPGSGFGPGGNEHIRVS-AFGHREYISEACRRLKNFL 441
I I + IR++ + ++ I + +
Sbjct: 391 YSIGVIALNATD------IRIAFSCVEKDDIPHVFDSIAKAI 426
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 53/316 (16%), Positives = 112/316 (35%), Gaps = 51/316 (16%)
Query: 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVI 177
L +I + ++ I + +GA S+I L + L + + V PS+ Y +
Sbjct: 65 RLNKSIENYL----KLKDIGIVLGNGA-SEIIELSISLFEKILIIV--PSYAEYEINAKK 117
Query: 178 VGQAGKFLKETGKYRNIVYMNCRPENNFFPDL----STTSRTDIIFFCSPNNPTGHAATW 233
G ++V+ + N D S D + +PNNP G
Sbjct: 118 HG------------VSVVF--SYLDENMCIDYEDIISKIDDVDSVIIGNPNNPNGGLINK 163
Query: 234 QQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGV 293
++ +++ A+ I+ D A+ + DPS + EI + I I + +KF G+
Sbjct: 164 EKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFI-IRAMTKFFAMPGI 222
Query: 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDY 353
R G+ + + + +N + + + CL + + + +
Sbjct: 223 RFGYGITNNKE-------IAAKIKA-KQNPWN-INCFAEMAAINCLKDTNY--IEESLLW 271
Query: 354 YKENAKIIVDAFQSLGL-------KVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTI 406
K+ K ++ +G N +V + S ++ +L++ I+
Sbjct: 272 IKKERKRFIEELNKIGFIKRVFSPHAN------FVLCRLENISGEKLYDSLLKE-DIVIR 324
Query: 407 PGSGFGPGGNEHIRVS 422
F + +R +
Sbjct: 325 RCCNFIGLDDSFVRFA 340
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 61/317 (19%), Positives = 97/317 (30%), Gaps = 67/317 (21%)
Query: 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSD--ISRL-QMLLGSNVTVAVQDPSFPAYIDT 174
+ +A+ F D + + G D R+ A P F Y
Sbjct: 55 RVMRKLAEHF----SCPEDNLMLVRG--IDECFDRISAEFSSMRFVTA--WPGFDGY--- 103
Query: 175 SVIVGQAGKFLKETGKYRNIVYMNCRPENNFF----PDLSTTSRTDIIFFCSPNNPTGHA 230
+ +G ++ I + DL+ SR D + +P+NPTG
Sbjct: 104 RARIAVSG------LRHFEI------GLTDDLLLDPNDLAQVSRDDCVVLANPSNPTG-- 149
Query: 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290
+L + + G ++ D Y Y + + + + SFSK G
Sbjct: 150 -QALSAGELDQLRQRAG-KLLIDETYVDYSSFRA----RGLAYGENELV-FRSFSKSYGL 202
Query: 291 TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTV 350
G+RLG P EL I R N + A L D
Sbjct: 203 AGLRLGALFGPSEL--------IAAMKR-KQWFCN-VGTLDLHALEAALDNDRA--REAH 250
Query: 351 IDYYKENAKIIVDAFQSLGLKV-----NGGKNAPYVWVQFPGSSSWDVFAEILEKTHILT 405
I + + DA + LG +V N +V V+ + E+ I
Sbjct: 251 IAKTLAQRRRVADALRGLGYRVASSEAN------FVLVENAAGE--RTLRFLRER-GIQV 301
Query: 406 IPGSGFGPGGNEHIRVS 422
G + HIR+S
Sbjct: 302 KDAG--QFGLHHHIRIS 316
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 7e-26
Identities = 50/310 (16%), Positives = 113/310 (36%), Gaps = 47/310 (15%)
Query: 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDTSV 176
LR +A + ++ + I +++G + ++ Q GS +A+ PSF Y D
Sbjct: 54 TLRQMLAKRN----SVDNNAILVTNGPTAAFYQIAQAFRGSRSLIAI--PSFAEYEDACR 107
Query: 177 IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQL 236
+ + + + + S D + C+PNNP G ++
Sbjct: 108 MYE------------HEVCFYPSNEDIGE----ADFSNMDFCWLCNPNNPDGRLLQRTEI 151
Query: 237 KKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE---VAIEISSFSKFAGFTGV 293
+L+ + V D +Y ++ T+ + + + + SFS G G+
Sbjct: 152 LRLLN--DHPDTTFVLDQSYVSFTTEEV----IRPADIKGRKNLVM-VYSFSHAYGIPGL 204
Query: 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDY 353
R+G+ V ++ +K T + + + L I
Sbjct: 205 RIGYIVANKDF--------MKRVAA-FSTPWA-VNALAIEAAKFILIHPAQ--FTLPIRK 252
Query: 354 YKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFG 412
++ N + A L G++V+ + ++ ++ ++ +LE+ ++L S F
Sbjct: 253 WQRNTVDFITALNRLDGVEVHPSG-TTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFR 311
Query: 413 PGGNEHIRVS 422
++R++
Sbjct: 312 GLDESYVRIT 321
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 8e-26
Identities = 59/315 (18%), Positives = 118/315 (37%), Gaps = 44/315 (13%)
Query: 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYID 173
+LR +AD + +E +E+ + G I L ++LL + + P+F Y
Sbjct: 68 WASSLRKEVADFY----QLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQ 123
Query: 174 TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-----STTSRTDIIFFCSPNNPTG 228
++I G + + + DL + +T I++ C+PNNPTG
Sbjct: 124 NALIEGAEVREIPLL--------------QDGEHDLEGMLNAIDEKTTIVWICNPNNPTG 169
Query: 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFA 288
+ ++ ++ ++ ++V D AY Y+T + + + + I +FSK
Sbjct: 170 NYIELADIQAFLDRVPSD-VLVVLDEAYIEYVTPQPEKHEKLVRTYKNLII-TRTFSKIY 227
Query: 289 GFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALR 348
G R+G+ + +E+ I+ N V FN ++I Q + + F +
Sbjct: 228 GLASARVGYGIADKEI--------IRQLNI-VRPPFN-TTSIGQKLAIEAIKDQAF--IG 275
Query: 349 TVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP 407
K + +K+ +V + + LEK +T
Sbjct: 276 ECRTSNANGIKQYEAFAKRFEKVKLYPAN-GNFVLIDLGIEAGT--IFSYLEKNGYITRS 332
Query: 408 GSGFGPGGNEHIRVS 422
G+ G +R++
Sbjct: 333 GAAL--GFPTAVRIT 345
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 63/467 (13%), Positives = 142/467 (30%), Gaps = 114/467 (24%)
Query: 54 LFPEISMRESEHIRKHPDARLIRLGIG----DTTQPIPDIITSAMAEHAFALSTVKGYKG 109
LF + +++ + DA + + + + + + A+A
Sbjct: 87 LFAFLDPDKNDEDKFLIDA--VNYCHTELGLNRDKVVAEWVNGAVAN------------N 132
Query: 110 YGAEQGNMALRTAIADKFYKDMGIEG------DEIFISDGAQSDISRLQMLLGSNVT--- 160
Y + I + F +++ + ++F ++G + I L N
Sbjct: 133 YPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKK 192
Query: 161 ---VAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T 212
+A+ +P F Y+ I + V ++ +N++ + +
Sbjct: 193 GDKIAINEPIFTPYLR---IPELKD------YEL-VEVDLHSYEKNDWEIEPNEIEKLKD 242
Query: 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVY-DSAYAAYITDPSPRSIYEI 271
+ +P NPT L + + + N +++ D Y A++ + +SIY +
Sbjct: 243 PSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN--FKSIYSV 300
Query: 272 PGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL-------------------RYS---NG 309
+ + S+SK G TG RLG + E+ RYS
Sbjct: 301 --VPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLD 358
Query: 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVID---------YYKENAKI 360
+K +R+ + + ++ ++ Y K+
Sbjct: 359 PDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKL 418
Query: 361 IVDAFQSL--GLKVNGGKNAP----YVWVQFP-----------------GSSSWDVFAEI 397
+ + + L ++ + Y + D ++
Sbjct: 419 VSERYDQLHDAMQAPKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKL 478
Query: 398 LEKTHILTIPGSGFGPGGNEHIRVSAFGHREY---ISEACRRLKNFL 441
EK ++ + G GFG +RVS +E + +
Sbjct: 479 AEKNGVVLVDGVGFG-AKPGELRVS------QANLPTEDYALIGKQV 518
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 74/388 (19%), Positives = 131/388 (33%), Gaps = 84/388 (21%)
Query: 88 DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQ 145
+I + + ++ Y G LR +A K +E + I I+ G
Sbjct: 56 EIAKEVLEKEPKSV-------MYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGT 108
Query: 146 SDISRL-QMLLGSNVTVAVQDPSFPAYIDT---------SVIVGQAG-------KFLKET 188
+ L ++L+ V ++PS+ + V V G + +KE
Sbjct: 109 GALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDGMRVDLLEEKIKEL 168
Query: 189 GKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPN--NPTGHAATWQQLKKLVEFAKAN 246
+ + + + P NP G + ++ K L+E A
Sbjct: 169 KAKGQ------KVK---------------LIYTIPTGQNPMGVTMSMERRKALLEIASKY 207
Query: 247 GSIIVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSK-FAGFTGVRLGWTVVPEEL 304
+I+ D+AY + + V I + SK TG R+GW + E+
Sbjct: 208 DLLIIEDTAYNFMRYEGGDIVPLKALDNEGRV-IVAGTLSKVLG--TGFRIGWIIAEGEI 264
Query: 305 RYSNGYPVIK---DFNRIVCTCFNGASNIVQAGGLACLSPDGFQA--LRTVIDYYKENAK 359
+ K DF A I Q L L F+ L + YKE
Sbjct: 265 L--KKVLMQKQPIDF---------CAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRD 313
Query: 360 IIVDAFQSL--GLKVN---GGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGP 413
I++ A ++ + G +V P G+ E++E+ ++ +PG F
Sbjct: 314 IMLKALENHLPNAEFTKPIAGM---FVMFFLPEGADGISFANELMEREGVVVVPGKPFYT 370
Query: 414 --GGNEHIRVSAFGH--REYISEACRRL 437
G IR++ F +E I ++L
Sbjct: 371 DESGKNAIRLN-FSRPSKEEIPIGIKKL 397
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 7e-25
Identities = 53/315 (16%), Positives = 102/315 (32%), Gaps = 59/315 (18%)
Query: 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSD--ISRL-QMLLGSNVTVAVQDPSFPAYIDT 174
LR + + G + I +++G SD ++ L + + PS+ Y
Sbjct: 69 KLREVAGELY----GFDPSWIIMANG--SDEVLNNLIRAFAAEGEEIGYVHPSYSYY--- 119
Query: 175 SVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDLST-TSRTDIIFFCSPNNPTGHAAT 232
+ G + R +F + F +PN P G
Sbjct: 120 GTLAEVQG------ARVRTF------GLTGDFRIAGFPERYEGKVFFLTTPNAPLG---P 164
Query: 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292
L+ + E A+ ++V D YA + + + V + + SK G
Sbjct: 165 SFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHE---NVVV-TRTLSKSYSLAG 220
Query: 293 VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVID 352
+R+G + E+ I ++ + +N + QA +A L + L
Sbjct: 221 MRIGLAIARPEV--------IAALDK-IRDHYN-LDRLAQAACVAALRDQAY--LSECCR 268
Query: 353 YYKENAKIIVDAFQSLGLKV-----NGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP 407
+E + +S+G V N Y++ P V+ + + +L
Sbjct: 269 RIRETREWFTTELRSIGYDVIPSQGN------YLFATPPDRDGKRVYDGLYAR-KVLVRH 321
Query: 408 GSGFGPGGNEHIRVS 422
S P +R+S
Sbjct: 322 FS--DPLLAHGMRIS 334
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 84/467 (17%), Positives = 156/467 (33%), Gaps = 94/467 (20%)
Query: 12 TTPLKATVPFTMDFFLSSRWPVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPD 71
+ ++ +S ++++S I RE D
Sbjct: 6 IHHHHHHMVVNLEGKISKI---------------GQNMKS----SII--REILKFAADKD 44
Query: 72 ARLIRLGIGDTTQPIPDII-TSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKFY 128
I G G P P+ +AE A + + + Y +G+ L+ I
Sbjct: 45 --AISFGGG---VPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLE 99
Query: 129 KDMGIEG---DEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDT---------S 175
+ GI G D + + G+Q + + ++ L + DP++ I+
Sbjct: 100 RMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVV 159
Query: 176 VIVGQAG---KFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPN--NPTGHA 230
V + G L+ + + + + N NP G
Sbjct: 160 VPLEDDGMDLNVLERKLSEFDKNGKIKQVK---------------FIYVVSNFHNPAGVT 204
Query: 231 ATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSK-FA 288
+ ++ K LVE A+ IV D Y A + I++I G V + +++FSK A
Sbjct: 205 TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERV-VLLNTFSKVLA 263
Query: 289 GFTGVRLGWTVVPEELRYSNGYPVIK---DFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345
G+R+G +E K D + I L
Sbjct: 264 --PGLRIGMVAGSKEFI--RKIVQAKQSADL---------CSPAITHRLAARYLERYDLL 310
Query: 346 A-LRTVIDYYKENAKIIVDAFQSLGLKVNGGK-NAP----YVWVQFP-GSSSWDVFAEIL 398
L+ I+ Y+ ++++A + + G K ++W+ P G +W++F
Sbjct: 311 EQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAK 370
Query: 399 EKTHILTIPGSGFGP--GGNEHIRVSAFGH--REYISEACRRLKNFL 441
K + +PG F + +R+S F E I E +RL+ +
Sbjct: 371 RK-KVFYVPGRVFKVYDEPSPSMRLS-FCLPPDEKIVEGIKRLREVV 415
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 9e-23
Identities = 65/360 (18%), Positives = 127/360 (35%), Gaps = 65/360 (18%)
Query: 109 GYGAEQGNMALRTAIADKFYKDMGI--EGDEIFISDGAQSDISRL-QMLLGSNVTVAVQD 165
YG +G LR + + + ++I I+ G+Q + + ++ L V V+
Sbjct: 113 QYGTTKGFTPLRETLMK-WLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEA 171
Query: 166 PSFPAYIDT---------SVIVGQAG---KFLKETGKYRNIVYMNCRPENNFFPDLSTTS 213
P++ A + + + G + L+E + + + +
Sbjct: 172 PTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEK--LKELKSQGKKVK----------- 218
Query: 214 RTDIIFFCSPN--NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSPRSIYE 270
+ + P NP G + K L+E A I+V D Y + + I
Sbjct: 219 ----VVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKA 274
Query: 271 IPGAREVAIEISSFSK-FAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASN 329
+ V I + +FSK A G R+GW V +I+ + +
Sbjct: 275 LDNEGRV-IYLGTFSKILA--PGFRIGWMVGDPG--------IIRKMEIAKQSTDLCTNV 323
Query: 330 IVQAGGLACLSPDGFQA-LRTVIDYYKENAKIIVDAFQSL---GLKVN---GGKNAPYVW 382
Q + + + + +YK +++A + G+K GG ++W
Sbjct: 324 FGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGM---FIW 380
Query: 383 VQFP-GSSSWDVFAEILEKTHILTIPGSGFGP--GGNEHIRVSAFGH--REYISEACRRL 437
V P G S + ++K + +PG F +R++ F + + I E +RL
Sbjct: 381 VTLPDGIDSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLN-FTYVDEDKIMEGIKRL 438
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 3e-22
Identities = 79/356 (22%), Positives = 139/356 (39%), Gaps = 65/356 (18%)
Query: 109 GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS--DISRLQMLLGSNVTVAVQDP 166
Y +G LR +A+ +G+ +E+ I+ G+Q D+ ++ L V ++ P
Sbjct: 69 QYSPTEGYAPLRAFVAEW----IGVRPEEVLITTGSQQALDLV-GKVFLDEGSPVLLEAP 123
Query: 167 SFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFC--SPN 224
S+ I + G + + E L + + F P+
Sbjct: 124 SYMGAIQA----------FRLQGP--RFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPS 171
Query: 225 --NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSPRSIYEI--PGAREVAI 279
NPTG K+L++ G ++V D AY Y + S++E+ I
Sbjct: 172 FQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVI 231
Query: 280 EISSFSK-FAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI-----VCTCFNGASNIVQA 333
+ SFSK + G+R+ + V E ++ + + T + Q
Sbjct: 232 YLGSFSKVLS--PGLRVAFAVAHPE--------ALQKLVQAKQGADLHT-----PMLNQM 276
Query: 334 GGLACLSPDGFQA-LRTVIDYYKENAKIIVDAFQSL---GLKVN---GGKNAPYVWVQFP 386
L +GF L V Y+E A+ ++ A ++ GG +VW++ P
Sbjct: 277 LVHELLK-EGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGM---FVWMELP 332
Query: 387 -GSSSWDVFAEILEKTHILTIPGSGFGP--GGNEHIRVSAFGH--REYISEACRRL 437
G S+ +F LE+ ++ +PG F GG +R+S + RE I+E RRL
Sbjct: 333 KGLSAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLS-YATLDREGIAEGVRRL 386
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 5e-22
Identities = 56/322 (17%), Positives = 103/322 (31%), Gaps = 64/322 (19%)
Query: 118 ALRTAIADKFYKD--MGIEGDEIFISDGAQSD--ISRL-QMLLGSNVTVAVQDPSFPAYI 172
LR +A K + + D ++ ++G S+ + +L Q G T PS+ +
Sbjct: 73 ELRDELAAYITKQTGVAVTRDNLWAANG--SNEILQQLLQAFGGPGRTALGFQPSYSMH- 129
Query: 173 DTSVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDLS------TTSRTDIIFFCSPNN 225
++ ++ + +F D+ + DI+F +PNN
Sbjct: 130 --PILAKGTH------TEFIAV------SRGADFRIDMDVALEEIRAKQPDIVFVTTPNN 175
Query: 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285
PTG L + I++ D AYA + PS + + + + S
Sbjct: 176 PTG---DVTSLDDVERIINVAPGIVIVDEAYAEFSPSPS--ATTLLEKYPTKLVVSRTMS 230
Query: 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345
K F G RLG+ V I V ++ S + QA + L
Sbjct: 231 KAFDFAGGRLGYFVANPA--------FIDAVML-VRLPYH-LSALSQAAAIVALRHSAD- 279
Query: 346 ALRTVIDYYKENAKIIVDAFQSLGLKV-----NGGKNAPYVWVQFPGSSSWDVFAEILEK 400
++ + + LG V N +V+ + L++
Sbjct: 280 -TLGTVEKLSVERVRVAARLEELGYAVVPSESN------FVFFGDFSDQH-AAWQAFLDR 331
Query: 401 THILTIPGSGFGPGGNEHIRVS 422
+L G H+R +
Sbjct: 332 -GVLIRD-----VGIAGHLRTT 347
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 4e-21
Identities = 60/314 (19%), Positives = 114/314 (36%), Gaps = 47/314 (14%)
Query: 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSD--ISRLQMLLGS--NVTVAVQDPSFPAYID 173
A+ A G++ +++ +S G +D I L + P++ Y
Sbjct: 62 AVIENYAQYA----GVKPEQVLVSRG--ADEGIELLIRAFCEPGKDAILYCPPTYGMYSV 115
Query: 174 TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD----LSTTSRTDIIFFCSPNNPTGH 229
++ +G + +N+ D +++ CSPNNPTG
Sbjct: 116 SAETIG--------------VECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQ 161
Query: 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG 289
Q + L+E + I+V D AY + S + +AI + + SK
Sbjct: 162 LINPQDFRTLLELTRGKA-IVVADEAYIEFCPQAS--LAGWLAEYPHLAI-LRTLSKAFA 217
Query: 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRT 349
G+R G+T+ EE VI +++ + S V LSP G A+R
Sbjct: 218 LAGLRCGFTLANEE--------VINLLMKVIAP-YP-LSTPVADIAAQALSPQGIVAMRE 267
Query: 350 VIDYYKENAKIIVDAFQSLGLKVN-GGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPG 408
+ + ++ A + + Y+ +F SS VF + ++ I+
Sbjct: 268 RVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKASS--AVFKSLWDQ-GIILRDQ 324
Query: 409 SGFGPGGNEHIRVS 422
+ P + +R++
Sbjct: 325 NKQ-PSLSGCLRIT 337
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-20
Identities = 62/372 (16%), Positives = 127/372 (34%), Gaps = 72/372 (19%)
Query: 110 YGAEQGNMALRTAIAD---------KFYKDMGIEGDEIFISDGAQSDISRL-QMLLGSNV 159
Y G L + + + ++ ++ G+Q + ++ +M++
Sbjct: 74 YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGD 133
Query: 160 TVAVQDPSFPAYIDT---------SVIVGQAG-------KFLKETGKYRNIVYMNCRPEN 203
V + +P++ + + +V ++G L P+
Sbjct: 134 NVLLDEPAYSGTLQSLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPK- 192
Query: 204 NFFPDLSTTSRTDIIFFCSPN--NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YI 260
+ PN NPTG++ T ++ K++ E A+ +I+ D Y
Sbjct: 193 --------------FLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQF 238
Query: 261 TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIV 320
+ + V I SFSK +G+R+G+ P+ +I+ +
Sbjct: 239 NKFRVPTFLSMDVDGRV-IRADSFSKIIS-SGLRIGFLTGPKP--------LIERVILHI 288
Query: 321 CTCFNGASNIVQ---AGGLACLSPDGFQA-LRTVIDYYKENAKIIVDAFQS-LGLKV--- 372
S Q + L +GF A + VID+Y I+ A L
Sbjct: 289 QVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWH 348
Query: 373 --NGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGF---GPGGNEHIRVS-AFG 425
G ++W++ + ++ E K +L +PG+ F + ++R S +
Sbjct: 349 VPAAGM---FLWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSA 405
Query: 426 HREYISEACRRL 437
E + A + L
Sbjct: 406 SPEQMDVAFQVL 417
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 50/296 (16%), Positives = 97/296 (32%), Gaps = 65/296 (21%)
Query: 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSD-ISRLQMLLGSNVTVAVQDPSFPAYIDTSV 176
L I + + + + + +G +D I + +++ P++ Y +
Sbjct: 60 ELIEKIL-SYLDTDFLSKNNVSVGNG--ADEI--IYVMMLMFDRSVFFPPTYSCY---RI 111
Query: 177 IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQL 236
G K+ + + D++F +PNNPTG +
Sbjct: 112 FAKAVG------AKFLEVPL-----TKDLRIPEVNVGEGDVVFIPNPNNPTG---HVFER 157
Query: 237 KKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296
+++ K + D AY + S + + +A+ I +FSK R+G
Sbjct: 158 EEIERILKTGA-FVALDEAYYEF-HGES--YVDFLKKYENLAV-IRTFSKAFSLAAQRVG 212
Query: 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE 356
+ V E+ I +NR V FN S + Q L + ++E
Sbjct: 213 YVVASEKF--------IDAYNR-VRLPFN-VSYVSQMFAKVALDHR---------EIFEE 253
Query: 357 NAKIIV-------DAFQSLGLKV-----NGGKNAPYVWVQFPGSSSWDVFAEILEK 400
K IV A + +G ++ N +V+V + + K
Sbjct: 254 RTKFIVEERERMKSALREMGYRITDSRGN------FVFVFMEKEEKERLLEHLRTK 303
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 57/324 (17%), Positives = 113/324 (34%), Gaps = 66/324 (20%)
Query: 118 ALRTAIADKFYKDMGIEGDE-IFISDGAQSD--ISRL-QMLLGSNVTVAVQDPSFPAYID 173
ALR + + + + + +G SD IS L V P F Y
Sbjct: 71 ALRAKLKEVM----QVPAGMEVLLGNG--SDEIISMLALAAARPGAKVMAPVPGFVMY-- 122
Query: 174 TSVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDLS------TTSRTDIIFFCSPNNP 226
++ AG ++ + P +F D + I++ PNNP
Sbjct: 123 -AMSAQFAG------LEFVGV------PLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNP 169
Query: 227 TGHAATWQQLKKLVEFAKAN--GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSF 284
TG+ ++ +V A+ + S++V D AY + S + + + + + +
Sbjct: 170 TGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPF-AQES--WMSRLTDFGNLLV-MRTV 225
Query: 285 SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF 344
SK G G+RLG+ + ++ ++ V +N + + +A L L
Sbjct: 226 SKL-GLAGIRLGYVAGDPQ--------WLEQLDK-VRPPYN-VNVLTEATALFALEHVAV 274
Query: 345 QALRTVIDYYKENAKIIVDAFQSL-GLKV-----NGGKNAPYVWVQFPGSSSWDVFAEIL 398
L + + + + G+ V N ++ + P ++ F +L
Sbjct: 275 --LDEQAAQLRAERSRVAEGMAAHGGVTVFPSAAN------FLLARVPDAA--QTFDRLL 324
Query: 399 EKTHILTIPGSGFGPGGNEHIRVS 422
+ +L S P +RV+
Sbjct: 325 AR-KVLIKNVSKMHPLLANCLRVT 347
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 3e-17
Identities = 65/371 (17%), Positives = 114/371 (30%), Gaps = 74/371 (19%)
Query: 110 YGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ---------------SDISRLQML 154
YG G +R A+ +G+ D + DG+ ++ S
Sbjct: 72 YGGLLGIADIRELWAEA----LGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWS 127
Query: 155 LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG-KYRNIVYMNCRPENNFFPDLST-- 211
V P + + + G + N+ P + PD+
Sbjct: 128 AEEKVKWLCPVPGYDRHFTI----------TEHFGFEMINV------PMTDEGPDMGVVR 171
Query: 212 ---TSRTDIIFFCSPN--NPTGHAATWQQLKKLVEFA-KANGSIIVYDSAYAA-YITDPS 264
+ P NPTG + Q ++L E + A IV+D+AYA ++D
Sbjct: 172 ELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF 231
Query: 265 PRSIYEIPGAREV-----AIEISSFSK--FAGFTGVRLGWTVVPEELRYSNGYPVIKDFN 317
P I A+ +SS SK AG + + +E Y +
Sbjct: 232 PIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGS---GVSFFASSKENI--EWYASHANVR 286
Query: 318 RIVCTCFNGASNIVQAGGLACL-SPDGFQA-LRTVIDYYKENAKIIVDAFQSLGLKVNGG 375
I G + + Q G +A + + +++ S +
Sbjct: 287 GI------GPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVA 340
Query: 376 K-NAP----YVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG---GNEHIRVS-AFGH 426
K +P ++ V ++ V E LT GS F NE+IR++ +
Sbjct: 341 KWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPP 400
Query: 427 REYISEACRRL 437
+ A
Sbjct: 401 VAELEVAMDGF 411
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 61/401 (15%), Positives = 119/401 (29%), Gaps = 84/401 (20%)
Query: 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGA 144
D + + + F + + YG G + +R AD +G+ +++ D +
Sbjct: 49 DFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADL----LGVPVEQVLAGDAS 104
Query: 145 Q----SDISRLQMLLGS-----------NVTVAVQDPSFPAYIDT---------SVIVGQ 180
D+ + G+ V P + + SV + +
Sbjct: 105 SLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNE 164
Query: 181 AG---KFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLK 237
G ++E K + M P F +NPTG T K
Sbjct: 165 DGPDMDAVEELVKNPQVKGMWVVP--VF------------------SNPTGFTVTEDVAK 204
Query: 238 KLVE-FAKANGSIIVYDSAYAA-YITDPSPRSIYEIP-----GAREVAIEISSFSK--FA 288
+L A +V+D+AYA +TD P I + G +S SK A
Sbjct: 205 RLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLA 264
Query: 289 GFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL-SPDGFQA- 346
G + + + E K + G + + Q +G +A
Sbjct: 265 GA---GVSFFLTSAE--------NRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAV 313
Query: 347 LRTVIDYYKENAKIIVDAFQSLGLKVNGGK-NAP----YVWVQFPGSSSWDVFAEILEKT 401
+R +++ S + + P ++ + ++ V E
Sbjct: 314 MRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKEA- 372
Query: 402 HILTIPGSGFGPGGNE----HIRVS-AFGHREYISEACRRL 437
I P + ++R++ + E + A +
Sbjct: 373 GIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGV 413
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 53/369 (14%), Positives = 111/369 (30%), Gaps = 69/369 (18%)
Query: 111 GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGS------------- 157
G G + R A + ++ + + + + + ++ L +
Sbjct: 67 GGVAGLPSARALFAGY----LDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLS 122
Query: 158 -NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG-KYRNIVYMNCRPENNFFPDLSTTSRT 215
+ V P + + L+ G + + + P+ + L+ T +
Sbjct: 123 QTPKMIVTVPGYDRHFLL----------LQTLGFELLTVDMQSDGPDVDAVERLAGTDPS 172
Query: 216 DIIFFCSPN--NPTGHAATWQQLKKLVE-FAKANGSIIVYDSAYA----AYITDPSPRSI 268
P NP G + ++ ++L A A I D AY P +
Sbjct: 173 VKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNF 232
Query: 269 YEI---PGAREVAIEISSFSK--FAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTC 323
+ G + A +S SK FAG LG+ E+ I
Sbjct: 233 VVLARDAGYPDRAFVFASTSKITFAGA---GLGFVASSEDNI--RWLSKYLGAQSI---- 283
Query: 324 FNGASNIVQAGGLACLS--PDGFQA-LRTVIDYYKENAKIIVDAFQSLGLKVNGGK---N 377
G + + QA + L+ P G + +R + + + ++ L G
Sbjct: 284 --GPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAE-LGEGGEYATWT 340
Query: 378 AP----YVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNE----HIRVS-AFGHRE 428
P ++ + + V + P P G + ++R++ E
Sbjct: 341 LPKGGYFISLDTAEPVADRVVKLAEAA-GVSLTPAGATYPAGQDPHNRNLRLAPTRPPVE 399
Query: 429 YISEACRRL 437
+ A + +
Sbjct: 400 EVRTAMQVV 408
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 24/238 (10%)
Query: 212 TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI 271
+ I C+P NP G + L +L + A + ++ D +A + D +
Sbjct: 148 QAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGV 207
Query: 272 -PGAREVAIEISSFSK---FAGFTGVRLGWTVVP-EELRYSNGYPVIKDFNRIVCTCFNG 326
A V I I++ SK AG + + + + ++ +G
Sbjct: 208 SDTAASVCITITAPSKAWNIAGL---KCAQIIFSNPSDA--------EHWQQLSPVIKDG 256
Query: 327 ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVNGGKNAPY-VWV 383
AS + A G L + Y K N ++ G K+ A Y +W+
Sbjct: 257 ASTLGLIAAEAAYR-YGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPM-QATYLMWI 314
Query: 384 QFPGSS-SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKN 439
F ++ +EK + G+ FG G R++ F RE + EA R+
Sbjct: 315 DFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLN-FATSREVLEEAIDRMAK 371
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 6e-10
Identities = 70/401 (17%), Positives = 130/401 (32%), Gaps = 81/401 (20%)
Query: 74 LIRLGIGDTTQPIPDIITSAM---AEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK- 129
L+++ + D I A+ + GY + + L A+ D K
Sbjct: 63 LLQMWVADMDFLPVPEIKEAIINYGREH-----IFGYNYFNDD-----LYQAVIDWERKE 112
Query: 130 -DMGIEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE 187
D + ++I DG IS Q V + P + + I +
Sbjct: 113 HDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPF--ARTI--------RL 162
Query: 188 TGKYRNIVYMNCRPENNF----FPDLS---TTSRTDIIFFCSPNNPTGHAATWQQLKKLV 240
+V + + N F L + I CSP+NP G L K+
Sbjct: 163 ND--HRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIA 220
Query: 241 EFAKANGSIIVYDSAYAAYITDPSP-RSIYEI-PGAREVAIEISSFSK---FAGFTGVRL 295
E K +G I+V D + + S+ + ++ I +SS +K AG
Sbjct: 221 ELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKN--- 277
Query: 296 GWTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA-------- 346
+ ++ E LR + F + QA
Sbjct: 278 SFAIIQNESLR--------RKFQYRQLANNQHEVPT--------VGMIATQAAFQYGKPW 321
Query: 347 LRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAP---Y-VWVQF--PGSSSWDVFAEILE 399
L + + N K+++ ++ +KV P Y VW+ F + + ++
Sbjct: 322 LEELKTVIEGNIKLVIKELEAKTKIKVM----EPEGTYLVWLDFSAYAIAQPQLSEKLQN 377
Query: 400 KTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKN 439
+ ++ G+ FG G R++ + + EA R+ +
Sbjct: 378 EAKVVLNDGAHFGKEGKYFARLN-VATPKNTVQEALSRIIS 417
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 8e-10
Identities = 72/412 (17%), Positives = 142/412 (34%), Gaps = 92/412 (22%)
Query: 71 DARLIRLGIGDTTQPIPDIITSAM---AEHAFALSTVKGYKGYGAEQGNMALRTAIADKF 127
+ + + I + I I ++M + A GY+ AE A+AD
Sbjct: 26 KEKELPMWIAEMDFKIAPEIMASMEEKLKVA-----AFGYESVPAE-----YYKAVADWE 75
Query: 128 YK--DMGIEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKF 184
+ D + G IS + + + VQ+P + + SVI
Sbjct: 76 EIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMF--YSVI------- 126
Query: 185 LKETGKYRNIVYMNCRPENNF----FPDLST---TSRTDIIFFCSPNNPTGHAATWQQLK 237
+ G R ++ + EN+ + DL T ++ FC+P+NP G+A + +++K
Sbjct: 127 -EGNG--RRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVK 183
Query: 238 KLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEI-PGAREVAIEISSFSK---FAGFTG 292
++ E + +++ D + + + + A+ + + S SK A
Sbjct: 184 RIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHA 243
Query: 293 VRLGWTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA----- 346
++P +LR G N+ L+ A
Sbjct: 244 ---ACAIIPNPDLR--------ARAEESFFLAGIGEPNL--------LAIPAAIAAYEEG 284
Query: 347 ---LRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP-------------GSSS 390
LR + ++N + K P V V G ++
Sbjct: 285 HDWLRELKQVLRDNFAYAREFLA---------KEVPEVKVLDSNASYLAWVDISALGMNA 335
Query: 391 WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNFL 441
D + EKT ++ G+G+ G+E +R++ +E + + +RLK +
Sbjct: 336 EDFCKYLREKTGLIISAGNGYRGNGHEFVRIN-LACPKELVIDGMQRLKQGV 386
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 43/252 (17%), Positives = 87/252 (34%), Gaps = 47/252 (18%)
Query: 211 TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIY 269
+ + C+P+NP G + L+++ + + I+V D + S
Sbjct: 161 VENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFN 220
Query: 270 EI-PGAREVAIEISSFSK---FAGFTGVRLGWTVVP-EELRYSNGYPVIKDFNRIVCTCF 324
+ P ++ A+ +SS +K AG + ++ L F
Sbjct: 221 TVSPDFKDFALVLSSATKTFNIAGTKN---SYAIIENPTLC--------AQFKHQQLVNN 269
Query: 325 NGASNIVQAGGLACLSPDGFQA--------LRTVIDYYKENAKIIVDAFQS--LGLKVNG 374
+ + L + L + +EN + V+ F LKV
Sbjct: 270 HHEVSS--------LGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKV-- 319
Query: 375 GKNAP---Y-VWVQF--PGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HR 427
P Y +W+ F G + +F + ++ ++ GS +G G H R++ +
Sbjct: 320 --MKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN-IAAPK 376
Query: 428 EYISEACRRLKN 439
+ E C+R+
Sbjct: 377 SLVEEICKRIVC 388
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 57/255 (22%)
Query: 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEI 271
+ C+P+NP G T +LKKL + + I+ D ++ I + I
Sbjct: 163 KDVKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASI 222
Query: 272 -PGAREVAIEISSFSK---FAGFTGVRLGWTVVP-EELRYSNGYPVIKDFNRIVCTCFNG 326
+ I + +K AG + V+P E+ K +
Sbjct: 223 SKEFEKNTITCMAPTKTFNIAGLQS---SYVVLPDEKDY--------KLLDDAFTRIDIK 271
Query: 327 ASNIVQAGGLACLSPDGFQA--------LRTVIDYYKENAKIIVDAFQSLGLKVNGGKNA 378
+N S +A L + ++Y + N + +N
Sbjct: 272 RNNC--------FSLVATEASYNNGESWLESFLEYLESNIDFAIKYIN---------ENM 314
Query: 379 PYVWVQFP-------------GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG 425
P + V+ P G S ++ + +++K + G+ FG GG+ + R++
Sbjct: 315 PKLKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRIN-LA 373
Query: 426 -HREYISEACRRLKN 439
R + EA R+KN
Sbjct: 374 CPRSMLEEALIRIKN 388
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 64/420 (15%), Positives = 117/420 (27%), Gaps = 119/420 (28%)
Query: 74 LIRLGIGDTTQPIPDIITSAM---AEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK- 129
L+ I D I A+ H V GY + + AIA F
Sbjct: 30 LLPFTISDMDFATAPCIIEALNQRLMHG-----VFGYSRWKND----EFLAAIAHWFSTQ 80
Query: 130 -DMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE 187
I+ + +S ++ + V + P++ A+ I +
Sbjct: 81 HYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAF--YKAI--------EG 130
Query: 188 TGKYRNIVYMNCRPENNF----FPDLS---TTSRTDIIFFCSPNNPTGHAATWQQLKKLV 240
R ++ + + + L I+ CSP NPTG T +L+ +
Sbjct: 131 NQ--RTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMA 188
Query: 241 EFAKANGSIIVYDSAYAAYITDPSPRSIYEI------PG---------AREVAIEISSFS 285
+ + +G ++ D EI AR ++S S
Sbjct: 189 DLCERHGVRVISD----------------EIHMDMVWGEQPHIPWSNVARGDWALLTSGS 232
Query: 286 K---FAGFTGVRLGWTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP 341
K TG + ++ R + + + L+
Sbjct: 233 KSFNIPALTG---AYGIIENSSSR--------DAYLSAL-------KGRDGLSSPSVLAL 274
Query: 342 DGFQA--------LRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP------- 386
A L + Y K+N I D P + Q P
Sbjct: 275 TAHIAAYQQGAPWLDALRIYLKDNLTYIADKMN---------AAFPELNWQIPQSTYLAW 325
Query: 387 ------GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKN 439
+ ++E+ + +PG +G G +R++ G R + + L N
Sbjct: 326 LDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN-AGCPRSKLEKGVAGLIN 384
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 3e-09
Identities = 60/407 (14%), Positives = 110/407 (27%), Gaps = 92/407 (22%)
Query: 74 LIRLGIGDTTQPIPDIITSAM---AEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK- 129
++ L + D P + + + V GY G E + +
Sbjct: 33 VVPLSVADMEFKNPPELIEGLKKYLDET-----VLGYTGPTEE-----YKKTVKKWMKDR 82
Query: 130 -DMGIEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE 187
I+ D I + G + + V + P + + I K
Sbjct: 83 HQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPF--FMAI--------KN 132
Query: 188 TGKYRNIVYMNCRPENNF----FPDLST---TSRTDIIFFCSPNNPTGHAATWQQLKKLV 240
R I+ ++ + F L + FCSP+NP G +L+K+
Sbjct: 133 QE--RKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIK 190
Query: 241 EFAKANGSIIVYDSAYAAYITDPSP-RSIYEI-PGAREVAIEISSFSK---FAGFTGVRL 295
+ + ++ D + I I + I ++ SK AG
Sbjct: 191 DIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGM--- 247
Query: 296 GWTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA-------- 346
++ ++R + F + L +
Sbjct: 248 SNIIIKNPDIR--------ERFTKSRDATSGMPFTT--------LGYKACEICYKECGKW 291
Query: 347 LRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP-------------GSSSWDV 393
L I +N +I+ D F+ N P + +
Sbjct: 292 LDGCIKVIDKNQRIVKDFFE---------VNHPEIKAPLIEGTYLQWIDFRALKMDHKAM 342
Query: 394 FAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKN 439
++ K I G FG GG R++ I E+ RL
Sbjct: 343 EEFMIHKAQIFFDEGYIFGDGGIGFERIN-LAAPSSVIQESLERLNK 388
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 7e-05
Identities = 59/426 (13%), Positives = 127/426 (29%), Gaps = 130/426 (30%)
Query: 53 YLFPEISMRESEHIRKHPDA-----RLIRLGIGDTTQPIPDIITSAMA-EHAFALSTVKG 106
+S E +HI DA RL + + + + + + F +S +K
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK- 99
Query: 107 YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDP 166
+ D+ Y D +++F A+ ++SRLQ L + A+ +
Sbjct: 100 -TEQRQPSMMTRMYIEQRDRLYND-----NQVF----AKYNVSRLQPYL--KLRQALLEL 147
Query: 167 SFPAYIDTSVIVGQAGKFLKETGK-----------------YRNIVYMN----CRPE--- 202
+ +I G G +GK I ++N PE
Sbjct: 148 RPAKNV---LIDGVLG-----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 203 ---NNFFP--DLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA 257
D + TSR+D S N + +L++L++ ++V +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDH----SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 258 AYITDP-----------SPRSIYEIPGA---REVAIE--ISSFSK------FAGFTGVR- 294
A + + + + A ++++ + + + R
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 295 ------------LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD 342
+++ E +R +G ++ + C + + I+++ L L P
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIR--DGLATWDNWKHVNC---DKLTTIIES-SLNVLEPA 369
Query: 343 GFQALRTVIDYYK------ENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAE 396
++ + +A I + W DV
Sbjct: 370 EYR------KMFDRLSVFPPSAHIPTILLSLI-------------WFD---VIKSDVM-V 406
Query: 397 ILEKTH 402
++ K H
Sbjct: 407 VVNKLH 412
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 441 | |||
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.98 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.98 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.98 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.98 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.98 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.98 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.97 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.97 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.97 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.97 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.97 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.97 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.97 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.97 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.97 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.97 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.97 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.97 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.97 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.97 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.97 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.97 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.97 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.97 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.97 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.97 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.97 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.97 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.97 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.97 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.96 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.96 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.96 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.96 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.96 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.96 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.96 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.96 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.96 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.96 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.96 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.96 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.96 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.96 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.96 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.96 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.96 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.96 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.96 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.95 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.95 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.95 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.95 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.95 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.95 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.95 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.95 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.95 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.95 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.95 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.95 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.95 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.95 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.95 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.95 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.94 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.94 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.94 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.94 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.94 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.94 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.94 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.94 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.94 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.94 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.94 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.94 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.94 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.94 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.94 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.93 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.93 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.93 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.92 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.92 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.92 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.92 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.92 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.92 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.92 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.91 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.91 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.91 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.91 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.91 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.91 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.9 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.9 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.9 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.83 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.89 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.88 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.88 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.88 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.88 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.88 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.88 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.86 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.86 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.86 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.85 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.85 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.83 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.81 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.8 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.74 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.67 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.64 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.63 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.59 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.51 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.41 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.33 | |
| 4ham_A | 134 | LMO2241 protein; structural genomics, PSI-biology, | 96.92 | |
| 3ic7_A | 126 | Putative transcriptional regulator; helix-turn-hel | 96.5 | |
| 3neu_A | 125 | LIN1836 protein; structural genomics, PSI-2, prote | 96.28 | |
| 3tqn_A | 113 | Transcriptional regulator, GNTR family; regulatory | 96.1 | |
| 3by6_A | 126 | Predicted transcriptional regulator; structural ge | 96.05 | |
| 2ek5_A | 129 | Predicted transcriptional regulators; helix-turn-h | 95.91 | |
| 3edp_A | 236 | LIN2111 protein; APC88337, listeria innocua CLIP11 | 95.34 | |
| 3eet_A | 272 | Putative GNTR-family transcriptional regulator; st | 95.1 | |
| 2wv0_A | 243 | YVOA, HTH-type transcriptional repressor YVOA; DNA | 94.94 | |
| 3f8m_A | 248 | GNTR-family protein transcriptional regulator; PHN | 94.87 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 94.79 | |
| 3bwg_A | 239 | Uncharacterized HTH-type transcriptional regulato; | 94.57 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 94.43 | |
| 1hw1_A | 239 | FADR, fatty acid metabolism regulator protein; hel | 93.94 | |
| 2ra5_A | 247 | Putative transcriptional regulator; beta structure | 93.9 | |
| 2v7f_A | 150 | RPS19, RPS19E SSU ribosomal protein S19E; diamond | 92.9 | |
| 3ihu_A | 222 | Transcriptional regulator, GNTR family; YP_298823. | 91.64 | |
| 3sxy_A | 218 | Transcriptional regulator, GNTR family; transcript | 91.03 | |
| 2hs5_A | 239 | Putative transcriptional regulator GNTR; APC6050, | 90.63 | |
| 2di3_A | 239 | Bacterial regulatory proteins, GNTR family; helix- | 89.91 | |
| 3c7j_A | 237 | Transcriptional regulator, GNTR family; structural | 89.32 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 81.32 |
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-56 Score=439.01 Aligned_cols=394 Identities=70% Similarity=1.202 Sum_probs=337.2
Q ss_pred ccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHH
Q 013521 46 MESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIAD 125 (441)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 125 (441)
+..++..|+|..+..+......++.++++|+|++|+++++.|+.+.+++.+.+.......+..+|++..|..+||+++|+
T Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~ 109 (432)
T 3ei9_A 30 MSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAK 109 (432)
T ss_dssp HHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHH
T ss_pred HHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHH
Confidence 44455557888888888877888887889999999999999999999999999876544566789888899999999999
Q ss_pred HHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCc
Q 013521 126 KFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF 205 (441)
Q Consensus 126 ~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~ 205 (441)
|+.+++++++++|++|+|+++++.++..++++||.|++++|+|+++...+...|..+.+......+.+++.++++.++++
T Consensus 110 ~~~~~~~~~~~~i~~t~G~~~al~~l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (432)
T 3ei9_A 110 TFYGGLGIGDDDVFVSDGAKCDISRLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGF 189 (432)
T ss_dssp HHHTTTTCCGGGEEEESCHHHHHHHHHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTT
T ss_pred HHHccCCCCcceEEECCChHHHHHHHHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCC
Confidence 99887888999999999999999988888899999999999999999999998865543333333346888888876677
Q ss_pred cCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC
Q 013521 206 FPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285 (441)
Q Consensus 206 ~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 285 (441)
..+++..+++++|++++||||||.++|.+++++|+++|++||++||+||+|+++.+++.+.++..+++.++++++++|||
T Consensus 190 ~~~l~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 269 (432)
T 3ei9_A 190 FPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFS 269 (432)
T ss_dssp SCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESH
T ss_pred cCChhhCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecch
Confidence 77777777899999999999999999999999999999999999999999999888766667777655567899999999
Q ss_pred cccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 286 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
|.+|++|+|+||++++++++......+.+.+.......+.+++.++|.++.+++.+.+.++++++++.++++++++.+.|
T Consensus 270 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 349 (432)
T 3ei9_A 270 NYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTF 349 (432)
T ss_dssp HHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998874222222345666666666677899999999999975555788999999999999999999
Q ss_pred HhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 366 QSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
+++|+.+.++.+++|+|+++++.++.+++..+++++||.+.||+.|++.+++++||+++.+++++++++++|++
T Consensus 350 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl~~ 423 (432)
T 3ei9_A 350 TSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQ 423 (432)
T ss_dssp HHTTCCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred HHCCceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHHHH
Confidence 99999888777899999999866778889999988899999999998777899999998899999999999986
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-53 Score=423.47 Aligned_cols=395 Identities=61% Similarity=1.082 Sum_probs=331.0
Q ss_pred cccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHH
Q 013521 45 NMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIA 124 (441)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 124 (441)
.+..+.+.++|..+..+......+++++++|+|+.|+++++.|+.+.+++.+.+..........+|++..|..+||++++
T Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia 121 (449)
T 3qgu_A 42 NFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVA 121 (449)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHH
T ss_pred HHHhCCCcchHHHHHHHHHHHHhhCCCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHH
Confidence 34445555778788777777777777889999999999999999999999999987654345668988889999999999
Q ss_pred HHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCC
Q 013521 125 DKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENN 204 (441)
Q Consensus 125 ~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~ 204 (441)
+|+..++++++++|++|+|+++++.++..++++||.|++++|+|+++...+...|.+|.+. ...+.+++.++++++++
T Consensus 122 ~~~~~g~~~~~~~i~~t~G~~~al~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~--~~~~~~~~~~~~~~~~~ 199 (449)
T 3qgu_A 122 STFYGHAGRAADEIFISDGSKCDIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHN--GTGFDGIEYMVCNPDNH 199 (449)
T ss_dssp HHHHTTTTCCGGGEEEESCHHHHHHHHHHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBC--SSSBTTEEEEECCGGGT
T ss_pred HHHHcCCCCCHHHEEEccCHHHHHHHHHHHhCCCCEEEEcCCCChhHHHHHHHcCCccccc--ccccceeEEEecccccC
Confidence 9986555678899999999999999887788999999999999999999999999543211 11223488999987767
Q ss_pred ccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEec
Q 013521 205 FFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISS 283 (441)
Q Consensus 205 ~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S 283 (441)
+..++++.+++++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++...+++++++|
T Consensus 200 ~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 279 (449)
T 3qgu_A 200 FFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCS 279 (449)
T ss_dssp TCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEE
T ss_pred CcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEec
Confidence 777776667899999999999999999999999999999999999999999999888753 5567667555678899999
Q ss_pred CCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 013521 284 FSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVD 363 (441)
Q Consensus 284 ~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 363 (441)
|||.+|++|+|+||++++++++......+...+.......+.+++.+.|.++.+++.+.+.++++++++.++++++++.+
T Consensus 280 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 359 (449)
T 3qgu_A 280 FSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKT 359 (449)
T ss_dssp CSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998863211122234555566666678999999999999864557889999999999999999
Q ss_pred HHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 364 AFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 364 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.|+++|+++..+.+++|+|+++++.++.+++..+++++||.+.||..|++.++++|||++..+++++++++++|++++
T Consensus 360 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~ 437 (449)
T 3qgu_A 360 TFTEMGFSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAY 437 (449)
T ss_dssp HHHHTTCCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 999999988877789999999985567888889998889999999999877789999998889999999999998763
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-51 Score=403.37 Aligned_cols=380 Identities=44% Similarity=0.776 Sum_probs=305.3
Q ss_pred cccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHH
Q 013521 45 NMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIA 124 (441)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 124 (441)
++..+.+++.|.++.++......+++++++|+|+.|++++++++.+.+++.+.+..........+|++..|..++|+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la 85 (400)
T 3asa_A 6 HFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLS 85 (400)
T ss_dssp HHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHH
T ss_pred hhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHH
Confidence 34444444678887777776666777788999999999888899999999998876543234567987889999999999
Q ss_pred HHHhhhCC-CCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccce-eEEeecCCC
Q 013521 125 DKFYKDMG-IEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN-IVYMNCRPE 202 (441)
Q Consensus 125 ~~l~~~~~-~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~-v~~v~~~~~ 202 (441)
+++. .+ +++++|++|+|+++++.++..++++||+|++++|+|+++...+...| .+ ++.++.+++
T Consensus 86 ~~l~--~g~~~~~~v~~~~G~~~al~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~ 151 (400)
T 3asa_A 86 EDFY--RGFVDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTG------------AKEIIALPCLQE 151 (400)
T ss_dssp HTTS--TTSSCGGGEEEESCHHHHHHHHHHHHCSSCEEEEEESCCHHHHHHHHHTT------------CSEEEEEECCGG
T ss_pred HHHH--cCCCCHHHEEEccChHHHHHHHHHHcCCCCEEEECCCCcHHHHHHHHHcC------------CcceEecccchh
Confidence 9964 24 78899999999999999876777999999999999999999888888 46 888888765
Q ss_pred CCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEE
Q 013521 203 NNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEI 281 (441)
Q Consensus 203 ~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i 281 (441)
+++..++++.+++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. +.++..++..+++++++
T Consensus 152 ~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 231 (400)
T 3asa_A 152 NAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEI 231 (400)
T ss_dssp GTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEE
T ss_pred cCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEE
Confidence 56666665546889999999999999999999999999999999999999999998877653 45566654335678999
Q ss_pred ecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
+||||.+|++|+|+||+++++++.......+...........+.+++.+.|.++.+++++. +++++++.++++++.+
T Consensus 232 ~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l 308 (400)
T 3asa_A 232 NSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLL 308 (400)
T ss_dssp EECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHH
T ss_pred ecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHH
Confidence 9999999999999999999987721100000112222233344468899999988888743 4578889999999999
Q ss_pred HHHHHhCCCeeeCCCCceEEEEE-cC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 362 VDAFQSLGLKVNGGKNAPYVWVQ-FP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 362 ~~~L~~~g~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
.+.|++.|+++.++.+|+|+|++ ++ +.+..+++..+++++||.+.||+.|++.+++++||++..+++++++++++|++
T Consensus 309 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~ 388 (400)
T 3asa_A 309 RKALLATGFEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQM 388 (400)
T ss_dssp HHHHHHTTCEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHHHC
T ss_pred HHHHHHCCCeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHHHH
Confidence 99999889988776789999999 87 33555788888877799999999997656789999987899999999999987
Q ss_pred hC
Q 013521 440 FL 441 (441)
Q Consensus 440 ~l 441 (441)
++
T Consensus 389 ~~ 390 (400)
T 3asa_A 389 AP 390 (400)
T ss_dssp --
T ss_pred HH
Confidence 64
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-50 Score=394.45 Aligned_cols=341 Identities=23% Similarity=0.370 Sum_probs=287.5
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
+.++|+|+.|+|++++|+.+.+++.+.+.. ...+|++..|..++|+++++|+.+ +..+++++|++|+|+++++
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al 104 (385)
T 1b5p_A 30 GVDLVALTAGEPDFDTPEHVKEAARRALAQ-----GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL 104 (385)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHH
Confidence 357899999999988889999999988753 335788778999999999999976 4456789999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~~ 222 (441)
.+ +..++++||+|++++|+|+++...++..| .+++.+++++++++..+++ + .+++++|++++
T Consensus 105 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 172 (385)
T 1b5p_A 105 FNLFQAILDPGDEVIVLSPYWVSYPEMVRFAG------------GVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNS 172 (385)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEES
T ss_pred HHHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeC
Confidence 98 57778999999999999999999999888 5889999875344444432 2 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
||||||.++|.+++++|+++|++||++||+||+|+++.+++.+.++..++. +++++++||||.+|++|+|+||+++++
T Consensus 173 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~i~~~s~SK~~~~~G~RiG~~~~~~ 250 (385)
T 1b5p_A 173 PNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP--EHTLTVNGAAKAFAMTGWRIGYACGPK 250 (385)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT--TTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC--CCEEEEEechhhcCCcccceEEEEeCH
Confidence 999999999999999999999999999999999999887653345666643 779999999999999999999999988
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD--GFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++ .+.+.........+++.+.|.++.+++++. +.+++++.++.++++++.+.+.|+++|+.+.++.+++|
T Consensus 251 ~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 322 (385)
T 1b5p_A 251 EV--------IKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFY 322 (385)
T ss_dssp HH--------HHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTE
T ss_pred HH--------HHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEE
Confidence 77 456666555555568899999988888641 34678999999999999999999988888887778899
Q ss_pred EEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|++++ +.+..++.+.++ ++||.+.||+.|+. ++++||+++.+++++++++++|++++
T Consensus 323 ~~~~~~~~~~~~~~l~~~l~-~~gv~v~~g~~f~~--~~~iRis~~~~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 323 VLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYATSEENLRKALERFARVL 382 (385)
T ss_dssp EEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred EEEecCCCCCCHHHHHHHHH-HCCeEEecccccCC--CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 999996 346677888877 66999999999965 67999999888999999999998864
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=395.49 Aligned_cols=394 Identities=17% Similarity=0.252 Sum_probs=288.6
Q ss_pred CcccchhhhHHhhhhCCCCCcccccccc-ccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCC--CCcHHH
Q 013521 14 PLKATVPFTMDFFLSSRWPVPRHCTEVS-RNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQ--PIPDII 90 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~~~~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~--~~~~~~ 90 (441)
+.++||..||+.|..+|+.....+.|-. .+........ ..+.++.. ... .+++|+|+.|.|+. .+++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-s~~~~~~~----~~~---~~~~i~l~~g~p~~~~~p~~~v 96 (448)
T 3aow_A 25 VQLNIYVHSQEGIGMEENIKSMLGDVERFFSKKALEMRA-SEVRELLK----LVE---TSDIISLAGGLPNPKTFPKEII 96 (448)
T ss_dssp --------------------CTTSCGGGGCCHHHHHCCC-CHHHHHHH----HHH---TSSSEECCCCCCCGGGSCHHHH
T ss_pred cccccccccchhhhhhhcccccccchHHHhhHHHhcCCC-cHHHHHHH----hcc---CCCcEeCCCCCCCchhCCHHHH
Confidence 3489999999999999993322222211 1111122221 11111111 111 24689999998764 367888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCc
Q 013521 91 TSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSF 168 (441)
Q Consensus 91 ~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y 168 (441)
.+++.+.+.... ....+|++..|..+||+++++++.+..++ ++++|++|+|+++++.+ +..++++||.|+++.|+|
T Consensus 97 ~~a~~~~l~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y 174 (448)
T 3aow_A 97 RDILVEIMEKYA--DKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTY 174 (448)
T ss_dssp HHHHHHHHHHSH--HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred HHHHHHHHHhhh--HHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCCh
Confidence 999998886521 12457988889999999999999654455 78999999999999998 567789999999999999
Q ss_pred hhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C------CCccEEE-EcCCCCccccCCCHHHHHH
Q 013521 169 PAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T------SRTDIIF-FCSPNNPTGHAATWQQLKK 238 (441)
Q Consensus 169 ~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~------~~~~~v~-i~~p~NPtG~~~~~~~~~~ 238 (441)
+++...+...| .+++.++.+++ +++++ +++ . .++++|+ +++||||||.++|.+++++
T Consensus 175 ~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~ 241 (448)
T 3aow_A 175 LAALQAFNFYE------------PQYIQIPLDDE-GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKY 241 (448)
T ss_dssp HHHHHHHHTTC------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHH
T ss_pred HHHHHHHHHcC------------CEEEEeccCCC-CCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHH
Confidence 99999998888 58888888764 33322 221 1 3788885 5699999999999999999
Q ss_pred HHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHH
Q 013521 239 LVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFN 317 (441)
Q Consensus 239 i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 317 (441)
|+++|++||++||+||+|+++.+++. +.++..++ ..+++++++||||.++ +|+|+||+++++++ ++.+.
T Consensus 242 i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~-~~~~vi~~~S~SK~~~-~GlriG~v~~~~~l--------~~~l~ 311 (448)
T 3aow_A 242 LLELASEYDFIVVEDDPYGELRYSGNPEKKIKALD-NEGRVIYLGTFSKILA-PGFRIGWMVGDPGI--------IRKME 311 (448)
T ss_dssp HHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGC-TTSCEEEEEESTTTTC-GGGCCEEEEECHHH--------HHHHH
T ss_pred HHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcC-CCCCEEEEccchhhcc-ccccEEEEEeCHHH--------HHHHH
Confidence 99999999999999999999888654 45666664 3467899999999999 99999999999877 45666
Q ss_pred HHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhC---CCeeeCCCCceEEEEEcC-CCChHH
Q 013521 318 RIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSL---GLKVNGGKNAPYVWVQFP-GSSSWD 392 (441)
Q Consensus 318 ~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~-~~~~~~ 392 (441)
........+++.+.|.++.+++++..+ .+++++++.++++++.+.+.|++. |+.+..+.+|+|+|++++ +.+..+
T Consensus 312 ~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~~~~~ 391 (448)
T 3aow_A 312 IAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKK 391 (448)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTCCHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCCCHHH
Confidence 555544456789999999999975433 678999999999999999999875 788877778999999997 446677
Q ss_pred HHHHHHHhcCeEEeCCCCcCCC--CCCeEEEEeec-CHHHHHHHHHHHHhhC
Q 013521 393 VFAEILEKTHILTIPGSGFGPG--GNEHIRVSAFG-HREYISEACRRLKNFL 441 (441)
Q Consensus 393 ~~~~ll~~~gi~v~pg~~f~~~--~~~~iRls~~~-~~~~~~~~l~~l~~~l 441 (441)
++.+++++ ||.+.||..|+.. +++++||+++. +++++++++++|++++
T Consensus 392 l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l 442 (448)
T 3aow_A 392 MLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETI 442 (448)
T ss_dssp HHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 88888877 9999999999653 46899999865 7899999999998763
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=374.94 Aligned_cols=339 Identities=27% Similarity=0.414 Sum_probs=283.8
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++|+|+.|+++++.|+.+.+++.+.+.. ...+|++..|..++|+++++++.+ +..+++++|++|+|+++++
T Consensus 30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 30 GRRIIHMEVGQPGTGAPRGAVEALAKSLET-----DALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp TCCCEECCCSSCSSCSCHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 467999999999999899999999998763 345788888999999999999975 4557899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---CCCCccEEEEcCCC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---TTSRTDIIFFCSPN 224 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~~~~~~~v~i~~p~ 224 (441)
.+ +..++++||+|+++.|+|+++...+...| .+++.++.++++++..+++ +. ++++|++++||
T Consensus 105 ~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~-~~~~v~i~~p~ 171 (391)
T 3h14_A 105 LLAFTALFDSGDRVGIGAPGYPSYRQILRALG------------LVPVDLPTAPENRLQPVPADFAGL-DLAGLMVASPA 171 (391)
T ss_dssp HHHHHHHCCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEECCGGGTTSCCHHHHTTS-CCSEEEEESSC
T ss_pred HHHHHHhcCCCCEEEEcCCCCccHHHHHHHcC------------CEEEEeecCcccCCCCCHHHHHhc-CCeEEEECCCC
Confidence 98 67788999999999999999999999998 5899999987655555533 33 78999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.++|.+++++|+++|++||+++|+||+|.++.+++.+.++... .+++++++|+||.+|++|+|+||+++++++
T Consensus 172 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 248 (391)
T 3h14_A 172 NPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL---TDECYVINSFSKYFSMTGWRVGWMVVPEDQ 248 (391)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT---CSSSEEEEESSSTTCCTTSCCEEEECCGGG
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc---CCCEEEEEechhccCCccceeEEEEeCHHH
Confidence 99999999999999999999999999999999998887655555444 467899999999999999999999999887
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee-eCCCCceEEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV-NGGKNAPYVWV 383 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~ 383 (441)
.+.+.........+++.+.|.++.+++. ..+++++.+++++++++.+.+.|+++++.. ..+.+++++|+
T Consensus 249 --------~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 318 (391)
T 3h14_A 249 --------VRVVERIAQNMFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYA 318 (391)
T ss_dssp --------HHHHHHHHHHTTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEE
T ss_pred --------HHHHHHHHhhhccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEE
Confidence 4666666666666788999998888887 457789999999999999999999886654 45667899999
Q ss_pred EcC--CCChHHHHHHHHHhcCeEEeCCCCcCC-CCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 384 QFP--GSSSWDVFAEILEKTHILTIPGSGFGP-GGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 384 ~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+++ +.+..++...+++++||.+.||+.|+. .+++++||++..+++++++++++|+++
T Consensus 319 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~ 378 (391)
T 3h14_A 319 DVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAF 378 (391)
T ss_dssp ECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHH
T ss_pred ecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 997 346778888888877999999999976 457899999988899999999999876
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-49 Score=391.75 Aligned_cols=346 Identities=21% Similarity=0.331 Sum_probs=286.9
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
+.++|+|+.|.|++++|+.+.+++.+++.. ....+|++..|..++|+++|+++.+ +.++++++|++|+|+++++
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDI----PMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTS----GGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhC----cCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 457999999999988899999999998864 2356898888999999999999976 4456788999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCC----------CccCCCC---C--C
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN----------NFFPDLS---T--T 212 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~----------~~~~~~~---~--~ 212 (441)
.+ +..++++||+|++++|+|+++...+...| .+++.++.++++ ++..+++ + .
T Consensus 132 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 199 (447)
T 3b46_A 132 LSCLMGLLNAGDEVIVFEPFFDQYIPNIELCG------------GKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT 199 (447)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC
T ss_pred HHHHHHHcCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEEeCCCccccccccccccCcccCHHHHHHhhc
Confidence 98 67778999999999999999999999888 578888876542 2333322 1 2
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc-CCCcceeEEEecCCcccCCc
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI-PGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~-~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++++|++++||||||.++|.+++++|+++|++||++||+||+|.++.+++.+.++..+ ++..+++++++|+||.+|++
T Consensus 200 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 279 (447)
T 3b46_A 200 SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAAT 279 (447)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCT
T ss_pred cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCc
Confidence 67899999999999999999999999999999999999999999998886544455555 22346789999999999999
Q ss_pred cceeEEEEe-eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 292 GVRLGWTVV-PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-FQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 292 G~r~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
|+|+||+++ ++++ ++.+.........+.+.+.|.++.++|+... ..+++++++.++++++.+.+.|+++|
T Consensus 280 G~riG~~~~~~~~l--------~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 351 (447)
T 3b46_A 280 GWRIGWVLSLNAEL--------LSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELG 351 (447)
T ss_dssp TSCCEEEECSCHHH--------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhEEEEeCCHHH--------HHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999 8777 4556555555556678999998888887432 25688899999999999999999889
Q ss_pred CeeeCCCCceEEEEEcCCC----------------ChHHHHHHHHHhcCeEEeCCCCcCCC-----CCCeEEEEeecCHH
Q 013521 370 LKVNGGKNAPYVWVQFPGS----------------SSWDVFAEILEKTHILTIPGSGFGPG-----GNEHIRVSAFGHRE 428 (441)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ll~~~gi~v~pg~~f~~~-----~~~~iRls~~~~~~ 428 (441)
+++..+.+|+|+|++++.. ++.+++.++++++||.+.||+.|+.. ++++|||+++.+++
T Consensus 352 ~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e 431 (447)
T 3b46_A 352 LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDA 431 (447)
T ss_dssp CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHH
T ss_pred CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHH
Confidence 8888778899999999742 34567778887789999999988643 26899999988999
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|+++
T Consensus 432 ~l~~~~~~l~~~ 443 (447)
T 3b46_A 432 YLENAVERLKLL 443 (447)
T ss_dssp HHHHHHHHGGGG
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=375.69 Aligned_cols=343 Identities=22% Similarity=0.383 Sum_probs=287.9
Q ss_pred CCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC---CCCC-cEEEcCCc
Q 013521 69 HPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG---IEGD-EIFISDGA 144 (441)
Q Consensus 69 ~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~---~~~~-~I~~t~G~ 144 (441)
.+++++|+|+.|++++++|+.+.+++.+.+. ...+|++..|..++|+++++|+.+.++ ++++ +|++|+|+
T Consensus 27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~ 100 (396)
T 3jtx_A 27 PEGMEAVPLHIGEPKHPTPKVITDALTASLH------ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGS 100 (396)
T ss_dssp CTTCCCEECSCCSCCSCCCHHHHHHHHHTGG------GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSH
T ss_pred ccCCCeEEeCCcCCCCCCCHHHHHHHHHHhh------hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCc
Confidence 3467899999999999999999999998764 345788888999999999999976445 5688 99999999
Q ss_pred HHHHHH-HHHhcCCC-----CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC
Q 013521 145 QSDISR-LQMLLGSN-----VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS 213 (441)
Q Consensus 145 ~~al~~-l~~l~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~ 213 (441)
++++.+ +..++++| |.|+++.|+|+++...+...| .+++.++.+. +++.+|++. .+
T Consensus 101 ~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~-~g~~~d~~~l~~~~~~ 167 (396)
T 3jtx_A 101 REALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGG------------GEIHFANCPA-PSFNPDWRSISEEVWK 167 (396)
T ss_dssp HHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTT------------CEEEEEECCT-TTCCCCGGGSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcC------------CEEEEeecCC-CCCccCHHHHHHhhcc
Confidence 999998 56778886 799999999999999999988 5889999844 465555443 24
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccc----cCCCcceeEEEecCCccc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYE----IPGAREVAIEISSFSKFA 288 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~----~~~~~~~~i~i~S~SK~~ 288 (441)
++++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ .+.+... +....++++++.||||.+
T Consensus 168 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 247 (396)
T 3jtx_A 168 RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS 247 (396)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTS
T ss_pred CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecccccc
Confidence 78999999999999999999999999999999999999999999988876 3444332 122257789999999999
Q ss_pred CCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 289 GFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 289 ~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+++|+|+||+++++++ .+.+.........+++.+.|.++.+++.+ .+++++.++.++++++.+.+.|+++
T Consensus 248 ~~~G~r~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~ 317 (396)
T 3jtx_A 248 NVPGLRSGFVAGDAEL--------LKNFLLYRTYHGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV 317 (396)
T ss_dssp SCGGGCCEEEEECHHH--------HHHHHHHHHHHTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccceEEEEeCHHH--------HHHHHHHHhhcccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998877 46666666555667899999999988874 3678999999999999999999886
Q ss_pred CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC------CCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 369 GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP------GGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+.+..+.+++|+|++++..+..++...+++++||.+.||+.|+. .+.+++||++..+++++++++++|++++
T Consensus 318 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 318 -FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp -SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred -CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 55566678999999998666788888888878999999999875 3578999999779999999999999875
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=381.01 Aligned_cols=346 Identities=25% Similarity=0.396 Sum_probs=289.1
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCC-CcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEG-DEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~-~~I~~t~G~~~ 146 (441)
++.++|+|+.|.++++.++.+.+++.+.+.. ....+|++..|..++|+++|+|+.+.++ +++ ++|++|+|+++
T Consensus 45 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 45 GPLPLINMAVGIPDGPTPQGIIDHFQKALTI----PENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CSSCCEECCCCSCSSCCCHHHHHHHHHHTTC----HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred CCCCEEecCCcCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 3456899999999888889999999988753 1234687778999999999999976434 455 79999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC-----CCccEEEE
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT-----SRTDIIFF 220 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-----~~~~~v~i 220 (441)
++.+ +..++++||+|+++.|+|+++...+...| .+++.++.++ +++..|++.. +++++|++
T Consensus 121 al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~l 187 (404)
T 2o1b_A 121 GLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLAD------------GKPVPLNLEP-PHYLPDWSKVDSQIIDKTKLIYL 187 (404)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTT------------CEEEEEECCT-TTCCCCGGGSCHHHHHHEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCC------------CEEEEeccCc-ccCcCCHHHHHHhhccCceEEEE
Confidence 9998 67778999999999999999999998888 5888898876 3554444432 46899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
++|+||||.++|.+++++|+++|++||++||+||+|.++.+++.+.++..+++..+++++++||||.+|++|+|+||+++
T Consensus 188 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 267 (404)
T 2o1b_A 188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG 267 (404)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEec
Confidence 99999999999999999999999999999999999999887654556666543347789999999999989999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ ++.+.........+++.+.|.++.+++++. ..+++++++.++++++.+.+.|+++|+.+.++.+++|
T Consensus 268 ~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 338 (404)
T 2o1b_A 268 NKDM--------IQALKKYQTHTNAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIY 338 (404)
T ss_dssp CHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCCBSSE
T ss_pred CHHH--------HHHHHHHHhhccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCcceE
Confidence 8877 456665555555668999999999888743 5678999999999999999999988888877777889
Q ss_pred EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|++++ +.+..++..++++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 339 ~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l 400 (404)
T 2o1b_A 339 VWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELA 400 (404)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGG
T ss_pred EEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 999997 4456778888887679999999998765678999999778899999999998864
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=370.61 Aligned_cols=357 Identities=23% Similarity=0.397 Sum_probs=291.2
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hC
Q 013521 54 LFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DM 131 (441)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~ 131 (441)
.|..+.+....... ++.++|+|+.|.++++.++.+.+++.+.+.. ....+|++..|..++|+++|+|+.+ +.
T Consensus 9 ~~~~~~~~~~~~~~--~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~~~~~l~~~ia~~~~~~~g~ 82 (376)
T 2dou_A 9 VFLVVDEAKRKARE--RGVGLIDLSIGSTDLPPPEAPLKALAEALND----PTTYGYCLKSCTLPFLEEAARWYEGRYGV 82 (376)
T ss_dssp HHHHHHHHHHHHHH--TTCCCEECSSCCCCCCCCHHHHHHHHHHTTC----GGGSSCCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHhhc--cCCCEEeccCCCCCCCCCHHHHHHHHHHHhC----CCcCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 44555544433322 3567999999999888889999999988754 2345787667899999999999976 34
Q ss_pred CCCCC-cEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC
Q 013521 132 GIEGD-EIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL 209 (441)
Q Consensus 132 ~~~~~-~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 209 (441)
.++++ +|++|+|+++++.+ +..++++||+|+++.|+|+++...+...| .+++.++. + +++..|+
T Consensus 83 ~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~-~-~~~~~d~ 148 (376)
T 2dou_A 83 GLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVAS------------LRTFLIPL-R-EDGLADL 148 (376)
T ss_dssp CCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTT------------CEEEEECB-C-TTSSBCG
T ss_pred CCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcC------------CEEEEeeC-C-CCCCCCH
Confidence 44566 99999999999997 67778899999999999999999998888 58888887 3 3544444
Q ss_pred CCC-----CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecC
Q 013521 210 STT-----SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSF 284 (441)
Q Consensus 210 ~~~-----~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 284 (441)
+.. +++++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++.+.++....+..+++++++||
T Consensus 149 ~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 228 (376)
T 2dou_A 149 KAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSL 228 (376)
T ss_dssp GGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEH
T ss_pred HHHHHhhccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecc
Confidence 332 468999999999999999999999999999999999999999999988765444555543345678999999
Q ss_pred CcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 013521 285 SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDA 364 (441)
Q Consensus 285 SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (441)
||.+|++|+|+||+++++++ .+.+.........+++.+.|.++.+++++ ...++++.++.++++++.+.+.
T Consensus 229 sK~~~~~G~r~G~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~ 299 (376)
T 2dou_A 229 SKSYNLAGFRLGFALGSEEA--------LARLERVKGVIDFNQYAGVLRMGVEALKT-PKEVVRGYARVYRERALGMAEA 299 (376)
T ss_dssp HHHHTCGGGCCEEEEECHHH--------HHHHHHHHHHHCCCSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCChhheeEEEecCHHH--------HHHHHHHHHhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999899999999998877 45666555555556789999999999975 3567899999999999999999
Q ss_pred HHhCCCeeeCCCCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 365 FQSLGLKVNGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 365 L~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|+++ +.+.++.+++|+|++++ +.+..++...++++ ||.+.||+.|+..+++++||++..+++++++++++|++++
T Consensus 300 L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 300 LKGV-LSLLPPRATMYLWGRLPEGVDDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp HTTT-SEECCCCBSSEEEEECCTTCCHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred HHHh-cCccCCCeeEEEEEECCCCCCHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 9988 78777677889999997 44567788888777 9999999998755678999999778999999999999875
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=377.43 Aligned_cols=345 Identities=27% Similarity=0.486 Sum_probs=282.8
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCC-CcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEG-DEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~-~~I~~t~G~~~a 147 (441)
+.++|+|+.|.++++.++.+.+++.+.+.. ....+|++..|..++|+++|+|+.+ +..+++ ++|++|+|++++
T Consensus 36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a 111 (412)
T 2x5d_A 36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQR----EDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEG 111 (412)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHTC-------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHH
T ss_pred CCCEEecCCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHH
Confidence 467999999999888889999999887754 2245788788999999999999976 444677 799999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..++++||+|+++.|+|+++...+...| .+++.++.++++++..|++. .+++++|+++
T Consensus 112 ~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~ 179 (412)
T 2x5d_A 112 LAHLMLATLDHGDTILVPNPSYPIHIYGAVIAG------------AQVRSVPLVPGIDFFNELERAIRESIPKPRMMILG 179 (412)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHT------------CEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEE
T ss_pred HHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEeecCCccCCCCCHHHHHHhcccCceEEEEC
Confidence 998 56678999999999999999999999888 58888998765354333221 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
+||||||.++|.+++++|+++|++||++||+||+|.++.+++ .+.++..+++..+++++++|+||.+|++|+|+||+++
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 259 (412)
T 2x5d_A 180 FPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVG 259 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEc
Confidence 999999999999999999999999999999999999988754 3456666644357889999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ ++.+.........+++.+.|.++.++++.. .++++++++.++++++.+.+.|+++|+.+.++.+|+|
T Consensus 260 ~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 330 (412)
T 2x5d_A 260 NPEL--------VSALARIKSYHDYGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMY 330 (412)
T ss_dssp CHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSBSSE
T ss_pred CHHH--------HHHHHHHHhhhccCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCeeeE
Confidence 8877 456665555555678899999999888743 3678999999999999999999988888877777889
Q ss_pred EEEEcCC-C---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 381 VWVQFPG-S---SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~~-~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+|++++. . +..++...+++++||.+.||+.|+..+++++||++..+++++++++++|+++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 331 VWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAM 394 (412)
T ss_dssp EEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 9999973 3 5677888887767999999999976567899999977899999999999875
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=373.79 Aligned_cols=344 Identities=26% Similarity=0.404 Sum_probs=287.9
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCc-EEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDE-IFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~-I~~t~G~~~al 148 (441)
+++++|+.|.+++++++.+.+++.+.+.. ...+|++..|..++|+++|+|+.+ +..+++++ |++|+|+++++
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~ 100 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDK-----GLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAF 100 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHH
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhC-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHH
Confidence 46899999999888889999999998864 234688778999999999999976 34467889 99999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||+|++++|+|+++...++..| .+++.++.++++++..+++. .+++++|++++
T Consensus 101 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 168 (389)
T 1gd9_A 101 LMGLSAFLKDGEEVLIPTPAFVSYAPAVILAG------------GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINS 168 (389)
T ss_dssp HHHHTTTCCTTCEEEEEESCCTTHHHHHHHHT------------CEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHHHHCC------------CEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEEC
Confidence 98 56678999999999999999999998888 58888988753344444322 25789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..+++..+++++++|+||.+|++|+|+||++++
T Consensus 169 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 248 (389)
T 1gd9_A 169 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP 248 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEEC
Confidence 999999999999999999999999999999999999887654 4566666543577899999999999999999999998
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
+++ .+.+.........+++.+.|.++.++++.... .++++++++++++++.+.+.|+++|+++..+.++++
T Consensus 249 ~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 320 (389)
T 1gd9_A 249 SWI--------IERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFY 320 (389)
T ss_dssp HHH--------HHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTE
T ss_pred HHH--------HHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeE
Confidence 876 45666555555566889999999999975221 278999999999999999999988888877777889
Q ss_pred EEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 381 VWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~ 382 (389)
T 1gd9_A 321 IFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERV 382 (389)
T ss_dssp ECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 999996 446677888887567999999999876567899999988999999999999875
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-48 Score=374.63 Aligned_cols=335 Identities=21% Similarity=0.310 Sum_probs=284.2
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~t~G~~~al~~ 150 (441)
++|+|+.|++++++|+.+.+++.+.+ ....+|++..|..++|+++|+|+.+.++ +++++|++|+|+++++.+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~------~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~ 97 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHT------HSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN 97 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTG------GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhh------hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence 79999999999988999999988866 2345788888999999999999976444 489999999999999997
Q ss_pred -HHHhcCC--CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCC
Q 013521 151 -LQMLLGS--NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNN 225 (441)
Q Consensus 151 -l~~l~~~--gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~N 225 (441)
+..++++ ||+|+++.|+|+++...+...| .+++.++.++++++.+++++ .++++++++++|||
T Consensus 98 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~n 165 (376)
T 3ezs_A 98 FPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIK------------AKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNN 165 (376)
T ss_dssp HHHHHTTTCSSCEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCT
T ss_pred HHHHHcCCCCCCEEEEecCCcHhHHHHHHHcC------------CEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCC
Confidence 6777899 9999999999999999999888 58999998876566554443 25789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC-----CcceeEEEecCCcccCCccceeEEEEe
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG-----AREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~-----~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
|||.++|.+++++|+++|++||+++|+||+|.++.+++.+.++....+ ..+++++++||||.+|++|+|+||+++
T Consensus 166 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 245 (376)
T 3ezs_A 166 PTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAG 245 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEee
Confidence 999999999999999999999999999999999888765555544311 357789999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ .+.+.........+.+.+.|.++.+++++ .+++++.++.++++++.+.+.|+ ++. .+.+++|
T Consensus 246 ~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~~~~~~ 311 (376)
T 3ezs_A 246 DSRL--------LEKYKAFRAYLGYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK--NTL--IYPYSFY 311 (376)
T ss_dssp CHHH--------HHHHHHHHTTTCCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST--TCC--CCSBSSE
T ss_pred CHHH--------HHHHHHHHhhhcCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc--CCC--CCCcceE
Confidence 8877 46666665555667899999999998875 34578999999999999999998 665 4568999
Q ss_pred EEEEcCCCChHHHHHHHHHhcCeEEeCCCCcC--CCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFPGSSSWDVFAEILEKTHILTIPGSGFG--PGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|++++ +..++...+++++||.+.||+.|+ ..+.+++||++..+++++++++++|++++
T Consensus 312 ~~~~~~--~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 372 (376)
T 3ezs_A 312 VYLPVQ--NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYR 372 (376)
T ss_dssp EEEECS--CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEECC--CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 999997 567888888875799999999998 45679999999779999999999998763
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=379.16 Aligned_cols=347 Identities=19% Similarity=0.283 Sum_probs=291.3
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCC-CcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEG-DEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~-~~I~~t~G~~~al 148 (441)
.++|+|+.|.|++++|+.+.+++.+.+... ....+|++..|..++|+++++++.+ +..+++ ++|++|+|+++++
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~---~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGD---FMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSC---GGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhCC---CccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 478999999999999999999999988741 1246898888999999999999975 445677 7999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC----CC------CccCCCC---C--C
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP----EN------NFFPDLS---T--T 212 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~----~~------~~~~~~~---~--~ 212 (441)
.+ +..++++||+|+++.|+|+++...+...| .+++.++.+. ++ ++..+++ + .
T Consensus 105 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~ 172 (422)
T 3fvs_A 105 FTAFQALVDEGDEVIIIEPFFDCYEPMTMMAG------------GRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT 172 (422)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC
T ss_pred HHHHHHHcCCCCEEEEcCCCchhhHHHHHHcC------------CEEEEEecccccccccccccccCCCCCHHHHHhhcC
Confidence 97 67778999999999999999999999888 5888888875 22 3333432 1 3
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCc
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++...+++++++||||.+|++
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 252 (422)
T 3fvs_A 173 SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT 252 (422)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCG
T ss_pred CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCc
Confidence 5789999999999999999999999999999999999999999999888753 556766655567899999999999999
Q ss_pred cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP------DGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~------~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
|+|+||+++++++ .+.+.........+++.+.|.++.+++.+ ....+++++++.++++++.+.+.|
T Consensus 253 G~r~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 324 (422)
T 3fvs_A 253 GWKVGWVLGPDHI--------MKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSL 324 (422)
T ss_dssp GGCCEEEECCHHH--------HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCHHH--------HHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 45566555555666889999998888863 123577899999999999999999
Q ss_pred HhCCCeeeCCCCceEEEEEcCC----CC----------hHHHHHHHHHhcCeEEeCCCCcCC-----CCCCeEEEEeecC
Q 013521 366 QSLGLKVNGGKNAPYVWVQFPG----SS----------SWDVFAEILEKTHILTIPGSGFGP-----GGNEHIRVSAFGH 426 (441)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~----~~----------~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~~iRls~~~~ 426 (441)
+++|+.+..+.+++|+|++++. .. ..+++..+++++||.+.||+.|+. .+.+++||+++.+
T Consensus 325 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~ 404 (422)
T 3fvs_A 325 QSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKD 404 (422)
T ss_dssp HTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCC
T ss_pred HHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCC
Confidence 9999998888899999999852 11 457888888888999999999863 4578999999889
Q ss_pred HHHHHHHHHHHHhhC
Q 013521 427 REYISEACRRLKNFL 441 (441)
Q Consensus 427 ~~~~~~~l~~l~~~l 441 (441)
++++++++++|++++
T Consensus 405 ~e~i~~~l~~l~~~l 419 (422)
T 3fvs_A 405 EATLQAMDEKLRKWK 419 (422)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=374.10 Aligned_cols=346 Identities=21% Similarity=0.312 Sum_probs=289.2
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCC-CcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEG-DEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~-~~I~~t~G~~~a 147 (441)
+.++|+|+.|.|++++|+.+.+++.+.+.. ....+|++..|..++|+++|+++.+ +..+++ ++|++|+|++++
T Consensus 22 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a 97 (410)
T 3e2y_A 22 DPSVVNLGQGFPDISPPSYVKEELSKAAFI----DNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGS 97 (410)
T ss_dssp STTSEECSSCCCCSCCCHHHHHHHHHHHTC----GGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhC----ccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 357999999999999999999999998864 3455798888999999999999975 555777 899999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC---------CCccCCCC---C--C
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE---------NNFFPDLS---T--T 212 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~---------~~~~~~~~---~--~ 212 (441)
+.+ +..++++||.|+++.|+|+++...+...| .+++.++.+.. .++..+++ + .
T Consensus 98 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~ 165 (410)
T 3e2y_A 98 LFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAG------------AVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS 165 (410)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC
T ss_pred HHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEEeccccccccccccccCCcCCHHHHHhhcC
Confidence 997 67778999999999999999999999888 57788877531 12223322 1 3
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCc
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++...+++++++||||.+|++
T Consensus 166 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 245 (410)
T 3e2y_A 166 SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVT 245 (410)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCG
T ss_pred CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCC
Confidence 5789999999999999999999999999999999999999999999888653 456666655568899999999999999
Q ss_pred cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP------DGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~------~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
|+|+||+++++++ .+.+.........+++.+.|.++.+++.+ ....+++++++.++++++.+.+.|
T Consensus 246 G~r~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 317 (410)
T 3e2y_A 246 GWKLGWSIGPAHL--------IKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLL 317 (410)
T ss_dssp GGCCEEEECCHHH--------HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECHHH--------HHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 45566665555666889999988888863 223577899999999999999999
Q ss_pred HhCCCeeeCCCCceEEEEEcCC----CC--------hHHHHHHHHHhcCeEEeCCCCcCCC-----CCCeEEEEeecCHH
Q 013521 366 QSLGLKVNGGKNAPYVWVQFPG----SS--------SWDVFAEILEKTHILTIPGSGFGPG-----GNEHIRVSAFGHRE 428 (441)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~ll~~~gi~v~pg~~f~~~-----~~~~iRls~~~~~~ 428 (441)
+++|+.+..+.+++|+|++++. .+ +.+++.++++++||.+.||+.|+.. +.++|||+++.+++
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e 397 (410)
T 3e2y_A 318 NSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDS 397 (410)
T ss_dssp HTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHH
T ss_pred HHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHH
Confidence 9999998888899999999852 11 2377888888889999999998643 36899999988999
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|+++
T Consensus 398 ~l~~~l~~l~~~ 409 (410)
T 3e2y_A 398 TLDAAEEIFRAW 409 (410)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=387.76 Aligned_cols=370 Identities=15% Similarity=0.140 Sum_probs=293.3
Q ss_pred CcccchhhhHHhhhhCCCCCccccccccccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCC-CCCCcHHH--
Q 013521 14 PLKATVPFTMDFFLSSRWPVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDT-TQPIPDII-- 90 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~-- 90 (441)
++|+||..||++|.+ |+..+ +|+++.. .. . .+++++|+.|.+ +++.++.+
T Consensus 16 vs~~tv~~a~~~l~~-~~~~~-~~~~~~~-----------------~~----~----~~~~i~l~~g~~~~~~~~~~~~~ 68 (430)
T 2x5f_A 16 QSNATAFAMLSDLGQ-NMFYP-KGILSQS-----------------AE----A----KSTTYNATIGMATNKDGKMFASS 68 (430)
T ss_dssp HHCHHHHHHCCHHHH-HCCCC-CHHHHHH-----------------HH----T----TTCSEECCCSSCEETTEECCCHH
T ss_pred hhhhHHHHHHhhhhh-hccCc-hHHHHHH-----------------Hh----c----CCCcEEeeeeeccCCCCchhhHH
Confidence 459999999999999 77222 4554321 00 0 136899999999 77766655
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-hCCCCCCc---EEEcCCcHHHHHH-HHHhcCCCCEEEEeC
Q 013521 91 TSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-DMGIEGDE---IFISDGAQSDISR-LQMLLGSNVTVAVQD 165 (441)
Q Consensus 91 ~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~~~---I~~t~G~~~al~~-l~~l~~~gd~Vlv~~ 165 (441)
.+++.+.+.. ....+|++..|..++|+++|+++.+ +.++++++ |++|+|+++++.+ +..++++||+|++++
T Consensus 69 ~~a~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~ 144 (430)
T 2x5f_A 69 LDAMFNDLTP----DEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPE 144 (430)
T ss_dssp HHTTBSSCCG----GGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEES
T ss_pred HHHHHHhcCc----ccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcC
Confidence 5555554321 2456898888999999999999965 45677889 9999999999998 677789999999999
Q ss_pred CCchhhHhHHHH-hccccccccccCccceeEEeecCCCCCccCCCCC-----C---CCccEEEEcCCCCccccCCCHHHH
Q 013521 166 PSFPAYIDTSVI-VGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T---SRTDIIFFCSPNNPTGHAATWQQL 236 (441)
Q Consensus 166 p~y~~~~~~~~~-~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~---~~~~~v~i~~p~NPtG~~~~~~~~ 236 (441)
|+|+++...+.. .| .+++.++.++++ +..+++. . .+++++++++||||||.++|.+++
T Consensus 145 p~y~~~~~~~~~~~g------------~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l 211 (430)
T 2x5f_A 145 HNWGNYKLVFNTRNG------------ANLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEV 211 (430)
T ss_dssp SCCTHHHHHHTTTTC------------CEEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHH
T ss_pred CcCccHHHHHHHhcC------------CeEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHH
Confidence 999999988888 77 588888887632 3333322 1 278999999999999999999999
Q ss_pred HHHHHHHHH-----cCcEEEEcccccccccCCC-CCccc-ccCCCcce---eEEEecCCcccCCccceeEEEEe---ecc
Q 013521 237 KKLVEFAKA-----NGSIIVYDSAYAAYITDPS-PRSIY-EIPGAREV---AIEISSFSKFAGFTGVRLGWTVV---PEE 303 (441)
Q Consensus 237 ~~i~~~a~~-----~~~~ii~De~~~~~~~~~~-~~~~~-~~~~~~~~---~i~i~S~SK~~~~~G~r~G~l~~---~~~ 303 (441)
++|+++|++ ||+++|+||+|.++.+++. +.++. .+++..++ +++++||||.+|++|+|+||+++ +++
T Consensus 212 ~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~ 291 (430)
T 2x5f_A 212 TTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQT 291 (430)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHH
T ss_pred HHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHH
Confidence 999999999 9999999999999887654 34555 55433566 89999999999999999999999 777
Q ss_pred ccccCCchhHHHHHHHHhh----hcCCCcHHHHHHHHHhcC-CCcH-HHHHHHHHHHHHHHHHHHHHHH----hCCCeee
Q 013521 304 LRYSNGYPVIKDFNRIVCT----CFNGASNIVQAGGLACLS-PDGF-QALRTVIDYYKENAKIIVDAFQ----SLGLKVN 373 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~l~-~~~~-~~~~~~~~~~~~~~~~l~~~L~----~~g~~~~ 373 (441)
+ .+.+...... .+.+++.+.|.++.++++ +..+ ++++++++.++++++.+.+.|+ +.|+.+.
T Consensus 292 ~--------~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~ 363 (430)
T 2x5f_A 292 T--------KEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAY 363 (430)
T ss_dssp H--------HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEEC
T ss_pred H--------HHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceee
Confidence 6 3555544443 456689999999999997 6533 4556699999999999999998 5688887
Q ss_pred CCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-cCHHHHHHHHHHHHhhC
Q 013521 374 GGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF-GHREYISEACRRLKNFL 441 (441)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~~~~~~l~~l~~~l 441 (441)
++.+|+|+|+++++.+..++...+++++||.+.|| +++++||++. .+++++++++++|++++
T Consensus 364 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g------~~~~iRis~~~~~~e~i~~~~~~l~~~l 426 (430)
T 2x5f_A 364 DFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIAL------NATDIRIAFSCVEKDDIPHVFDSIAKAI 426 (430)
T ss_dssp CCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEEC------SSSEEEEEGGGSCGGGHHHHHHHHHHHH
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecC------CCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence 77778899999985566778888887569999997 3579999997 68899999999998753
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-46 Score=366.84 Aligned_cols=344 Identities=22% Similarity=0.355 Sum_probs=277.5
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~a 147 (441)
+++++|+|+.|.|++++++.+.+++.+.+..... ....+|++..|..++|+++++|+.+ +.++++++|++|+|++++
T Consensus 33 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 33 GKENVYDFSIGNPSIPAPQIVNDTIKELVTDYDS-VALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp CGGGCEECCSCCCCSCCCHHHHHHHHHHHHHSCH-HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CCCCeEEeecCCCCCCCCHHHHHHHHHHHhcCCc-cccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 3457999999999888899999999998875210 1156798888999999999999976 455789999999999999
Q ss_pred HHH-HHHhcCCC-CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEE
Q 013521 148 ISR-LQMLLGSN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFF 220 (441)
Q Consensus 148 l~~-l~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i 220 (441)
+.+ +..++++| |+|++++|+|+++...+...| .+++.++.+++ ++..+++. .+++++|++
T Consensus 112 l~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~ 178 (398)
T 3ele_A 112 LSICFRALTSDAYDEFITIAPYFPEYKVFVNAAG------------ARLVEVPADTE-HFQIDFDALEERINAHTRGVII 178 (398)
T ss_dssp HHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECCCTT-TSSCCHHHHHHTCCTTEEEEEE
T ss_pred HHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEEecCCc-CCcCCHHHHHHHhCcCCCEEEE
Confidence 998 67778999 999999999999999999888 58999998754 44444322 357999999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHH------cCcEEEEcccccccccCCCCC-cccccCCCcceeEEEecCCcccCCccc
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKA------NGSIIVYDSAYAAYITDPSPR-SIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~------~~~~ii~De~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
++||||||.++|.+++++|+++|++ ||+++|+||+|+++.+++.+. .+.. ..+++++++||||.+|++|+
T Consensus 179 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~G~ 255 (398)
T 3ele_A 179 NSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK---YYDNTLVCYSYSKSLSLPGE 255 (398)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG---TCSSEEEEEESTTTSSCTTT
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh---hcCCeEEEEehhhcCCCccc
Confidence 9999999999999999999999999 999999999999988865322 2222 24678999999999999999
Q ss_pred eeEEEEeeccccccCCchhHHHHHHHHhh-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 013521 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCT-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV 372 (441)
Q Consensus 294 r~G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 372 (441)
|+||++++++++.. ..+.+.+...... .+.+++.+.|.++.+++.+.. .++.++++++.+.+.|+++|+.+
T Consensus 256 r~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~l~~~L~~~g~~~ 327 (398)
T 3ele_A 256 RIGYVLVPDEVYDK--AELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG------DINAYKENRDLLYEGLTRIGYHC 327 (398)
T ss_dssp CCEEEECCTTSTTH--HHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC------CHHHHHHHHHHHHHHHHHHTCCE
T ss_pred eeEEEEEcchhhhH--HHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHcCCee
Confidence 99999999886410 0112233332222 245577788888877776433 35788889999999999888888
Q ss_pred eCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 373 NGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
..+.+++|+|++++..+..++.+.+ +++||.+.||+.|+. ++++||+++.+++++++++++|++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~--~~~iRis~~~~~e~i~~~l~~l~~~l 393 (398)
T 3ele_A 328 FKPDGAFYMFVKALEDDSNAFCEKA-KEEDVLIVAADGFGC--PGWVRISYCVDREMIKHSMPAFEKIY 393 (398)
T ss_dssp ECCSBSSEEEEECSSSCHHHHHHHH-HTTTEECEESGGGTC--TTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred cCCCeeEEEEEEcCCCCHHHHHHHH-HHCCEEEeCccccCC--CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 8888888999999865666777655 566999999998864 57999999889999999999998763
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-47 Score=368.66 Aligned_cols=341 Identities=21% Similarity=0.310 Sum_probs=284.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~al~ 149 (441)
++|+|+.|.+++++++.+.+++.+.+.. ...+|++..|..++|+++++|+.+ +.+++++ +|++|+|+++++.
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~ 105 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVAQ-----GANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY 105 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHh-----hccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHH
Confidence 5899999999888889999999998863 245787778999999999999976 4457788 9999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSP 223 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p 223 (441)
+ +..++++||.|++++|+|+++...++..| .+++.++.+.+ ++..+++. .+++++|++++|
T Consensus 106 ~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~l~~p 172 (386)
T 1u08_A 106 AAITALVRNGDEVICFDPSYDSYAPAIALSG------------GIVKRMALQPP-HFRVDWQEFAALLSERTRLVILNTP 172 (386)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECCTT-TCCCCHHHHHHHCCTTEEEEEEESS
T ss_pred HHHHHhCCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEeecCcc-cCcCCHHHHHHhhcccCEEEEEeCC
Confidence 8 56678999999999999999999998888 58888988653 23333321 367899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..+++..+++++++|+||.+|++|+|+||+++++
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 252 (386)
T 1u08_A 173 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA 252 (386)
T ss_dssp CTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH
Confidence 99999999999999999999999999999999999887653 34554442224678999999999999999999999998
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVW 382 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 382 (441)
++ .+.+.........+.+.+.|.++.+++++. ..++++++++++++++.+.+.|+++|+++..+.+|+|+|
T Consensus 253 ~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~ 323 (386)
T 1u08_A 253 PI--------SAEIRKVHQYLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLL 323 (386)
T ss_dssp HH--------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEE
T ss_pred HH--------HHHHHHHHHhhccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEE
Confidence 76 455655554445567888998888888743 467889999999999999999998899887777789999
Q ss_pred EEcCC---CChHHHHHHHHHhcCeEEeCCCCcCC--CCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 383 VQFPG---SSSWDVFAEILEKTHILTIPGSGFGP--GGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 383 ~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
++++. .+..++...+++++||.+.||+.|.. .+++++||++..+++++++++++|+++
T Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~ 386 (386)
T 1u08_A 324 VDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 386 (386)
T ss_dssp EECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTTC
T ss_pred EecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhhC
Confidence 99985 35677878888777999999998864 357899999988999999999999763
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=366.95 Aligned_cols=339 Identities=24% Similarity=0.399 Sum_probs=283.5
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++++|+.|.++++.|+.+.+++.+.+.. ...+|++..|..++|+++|+|+.+ +..+++++|++|+|+++++
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al 114 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQK-----GEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQAL 114 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHTT-----CCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHH
Confidence 457999999999888889999999998863 234787778999999999999976 4445889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||+|++++|+|+++...++..| .+++.++.++++++..+++. .+++++|++++
T Consensus 115 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 182 (389)
T 1o4s_A 115 FNAFMALLDPGDEVIVFSPVWVSYIPQIILAG------------GTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINS 182 (389)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEES
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcC
Confidence 98 56678999999999999999999998888 58888988753344444321 25789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|+||||.++|.+++++|+++|++||+++|+||+|+.+.+++.+.++..+++..+++++++||||.+|++|+|+||+++++
T Consensus 183 p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~ 262 (389)
T 1o4s_A 183 PNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE 262 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCH
Confidence 99999999999999999999999999999999999988765445666664335678999999999999999999999988
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVW 382 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 382 (441)
++ .+.+.........+++.+.|.++.+++++. ++++++.++++++.+.+.|+++|+++..+.+++++|
T Consensus 263 ~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 330 (389)
T 1o4s_A 263 KV--------ATAVSKIQSHTTSCINTVAQYAALKALEVD----NSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLF 330 (389)
T ss_dssp HH--------HHHHHHHHHHHTCSCCHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEE
T ss_pred HH--------HHHHHHHhhhcccCCCHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHhcCCeeecCCcceEEE
Confidence 76 456665555555567889999999998754 478889999999999999998888887777788999
Q ss_pred EEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 383 VQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 383 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++++ .+..++.+++++++||.+.||..|+. ++++||++..+++++++++++|++++
T Consensus 331 ~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~~~~~~l~~~l~~l~~~l 386 (389)
T 1o4s_A 331 FKVR-GDDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFATSIERLTEALDRIEDFL 386 (389)
T ss_dssp EECS-SCHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EeCC-CCHHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence 9997 45677888887566999999998874 46999999889999999999998763
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=370.40 Aligned_cols=350 Identities=21% Similarity=0.347 Sum_probs=286.1
Q ss_pred CCCCeEEeCCCCCC----CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-hCCCCCCcEEEcCCc
Q 013521 70 PDARLIRLGIGDTT----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-DMGIEGDEIFISDGA 144 (441)
Q Consensus 70 ~~~~~i~l~~g~~~----~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~~~I~~t~G~ 144 (441)
+++++|+|+.|+|+ +++++.+.+++.+.+.. ....+|++..|..++|+++|+++.+ +..+++++|++|+|+
T Consensus 52 ~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 52 PNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDS----GKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp TTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHH----CCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred CCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhc----CcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 34578999999975 57889999999998875 3456898888999999999999854 445789999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEE
Q 013521 145 QSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDII 218 (441)
Q Consensus 145 ~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v 218 (441)
++++.+ +..++++||+|+++.|+|+++...+...| .+++.++.++++++..+++ + .++++++
T Consensus 128 t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 195 (427)
T 3dyd_A 128 SQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMG------------IEVKLYNLLPEKSWEIDLKQLEYLIDEKTACL 195 (427)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEEEGGGTTEECHHHHHSSCCTTEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHHhccCCCEE
Confidence 999998 56778999999999999999999999998 5888888865444444432 1 2578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
++++||||||.++|.+++++|+++|++||+++|+||+|++|.+++. +.++..+.. ..++++++||||.|+++|+|+||
T Consensus 196 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~-~~~vi~~~S~sK~~~~~G~riG~ 274 (427)
T 3dyd_A 196 IVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLST-DVPILSCGGLAKRWLVPGWRLGW 274 (427)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCS-SCCEEEEEESTTTSSCGGGCCEE
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCC-CCcEEEEeeccccCCCcCcceEE
Confidence 9999999999999999999999999999999999999999887654 445555543 34579999999999999999999
Q ss_pred EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCC
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGK 376 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 376 (441)
++++++... ....+.+.+...... ..+++.+.|.++.+++++...+++++++++++++++.+.+.|+++ |+.+..+.
T Consensus 275 ~~~~~~~~~-~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~ 352 (427)
T 3dyd_A 275 ILIHDRRDI-FGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPS 352 (427)
T ss_dssp EEEECSTTS-SHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCS
T ss_pred EEecCcchh-hHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC
Confidence 999863100 000113444443333 356889999999999975456778999999999999999999998 88887778
Q ss_pred CceEEEEEcC------CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 377 NAPYVWVQFP------GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 377 ~~~~~~~~~~------~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+|+|+|++++ ..+..+++.++++++||.+.||+.|+. ++++||+++.+++++++++++|+++
T Consensus 353 ~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~~~~e~i~~~l~~l~~~ 420 (427)
T 3dyd_A 353 GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVITVPEVMMLEACSRIQEF 420 (427)
T ss_dssp BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESCSCHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEECCCHHHHHHHHHHHHHH
Confidence 8999999886 135678888888777999999998864 6899999988999999999999876
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=370.00 Aligned_cols=347 Identities=19% Similarity=0.302 Sum_probs=286.9
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~al~ 149 (441)
++|+|+.|.+++++++.+.+++.+.+.... ....+|++..|..++|+++++++.+ +.+++++ +|++|+|+++++.
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~ 115 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSPD--PLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 115 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCSC--GGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhccc--cCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHH
Confidence 589999999988888999999999886421 2456788778999999999999976 4447788 9999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCC--------CccCCCCC-----CCCc
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN--------NFFPDLST-----TSRT 215 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~--------~~~~~~~~-----~~~~ 215 (441)
+ +..++++||+|+++.|+|+++...+...| .+++.++.+.++ ++..+++. .+++
T Consensus 116 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 183 (429)
T 1yiz_A 116 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAG------------GIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKT 183 (429)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTE
T ss_pred HHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEeCCcccccccccccCcccCHHHHHHHhccCc
Confidence 8 56678999999999999999999988888 588888887642 33334322 3678
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccce
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..+++..++++++.|+||.+|++|+|
T Consensus 184 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r 263 (429)
T 1yiz_A 184 KMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWK 263 (429)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGC
T ss_pred eEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcc
Confidence 9999999999999999999999999999999999999999999887653 345555543457889999999999999999
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC-----Cc-HHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP-----DG-FQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-----~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+||+++++++ ++.+.........+.+.+.|.++.+++++ .. ..++++.++.++++++.+.+.|+++
T Consensus 264 ~G~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 335 (429)
T 1yiz_A 264 IGWAYGPEAL--------LKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV 335 (429)
T ss_dssp CEEEESCHHH--------HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCHHH--------HHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999877 45666555545566889999988888875 32 3578899999999999999999988
Q ss_pred CCeeeCCCCceEEEEEcCCC-------------ChHHHHHHHHHhcCeEEeCCCCcCCC-----CCCeEEEEeecCHHHH
Q 013521 369 GLKVNGGKNAPYVWVQFPGS-------------SSWDVFAEILEKTHILTIPGSGFGPG-----GNEHIRVSAFGHREYI 430 (441)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ll~~~gi~v~pg~~f~~~-----~~~~iRls~~~~~~~~ 430 (441)
|+.+..+.+|+|+|++++.. +..++..++++++||.+.||+.|... ++++|||++..+++++
T Consensus 336 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i 415 (429)
T 1yiz_A 336 GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENL 415 (429)
T ss_dssp TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHH
T ss_pred CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHH
Confidence 88887777889999999742 34567777876779999999888642 2689999998899999
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
++++++|++++
T Consensus 416 ~~~l~~l~~~l 426 (429)
T 1yiz_A 416 QKAAEILRKWK 426 (429)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhc
Confidence 99999999864
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=364.21 Aligned_cols=342 Identities=24% Similarity=0.397 Sum_probs=284.5
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++++|+.|.++++.|+.+.+++.+.+.. ...+|++..|..++|+++++++.+ +..+++++|++|+|+++++
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQ-----GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 467999999999888889999999998863 345788888999999999999976 4446789999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.++++..+++. .+++++|++++
T Consensus 104 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 171 (388)
T 1j32_A 104 FNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAE------------GTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNT 171 (388)
T ss_dssp HHHHHHHCCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHhcCCCCEEEEcCCCChhHHHHHHHcC------------CEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeC
Confidence 98 56678999999999999999999988888 58888888753344444322 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC-CcceeEEEecCCcccCCccceeEEEEe
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
|+||||.++|.+++++|+++|++||+++|+||+|+++.+++. +.++..++. ..++++++.|+||.+|++|+|+||+++
T Consensus 172 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~ 251 (388)
T 1j32_A 172 PSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG 251 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEe
Confidence 999999999999999999999999999999999999887653 345555532 135789999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCce
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAP 379 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 379 (441)
++++ .+.+.........+++.+.|.++.++++. ..+++++++++++++++.+.+.|+++ |+++..+.+++
T Consensus 252 ~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 322 (388)
T 1j32_A 252 PVPL--------VKAATKIQGHSTSNVCTFAQYGAIAAYEN-SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF 322 (388)
T ss_dssp CHHH--------HHHHHHHHHTTTCSCCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTT
T ss_pred CHHH--------HHHHHHHHhhcccCCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeE
Confidence 8876 45666555555566788999888888863 34678899999999999999999988 88887777788
Q ss_pred EEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 380 YVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 380 ~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
++|++++ +.+..++...+++++||.+.||..|+. ++++|+++..+++++++++++|+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~i~~~~~~l~~~ 383 (388)
T 1j32_A 323 YMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYATDLDTIKRGMERLEKF 383 (388)
T ss_dssp EECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCSCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEecCCHHHHHHHHHHHHHH
Confidence 9999886 346677888888767999999998864 5789999988999999999999875
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=367.39 Aligned_cols=343 Identities=22% Similarity=0.313 Sum_probs=283.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~al~ 149 (441)
++|+|+.|.+++++++.+.+++.+.+.. ...+|++..|..++|+++|+++.+ +.+++++ +|++|+|+++++.
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~ 100 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIAG-----GVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIA 100 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHH
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHH
Confidence 5899999999888889999999998864 245788888999999999999976 4446788 9999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC-CCccCCCCC-----CCCccEEEEcC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE-NNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
+ +..++++||+|++++|+|+++...+...| .+++.++.+.+ .++..+++. .+++++|++++
T Consensus 101 ~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~ 168 (411)
T 2o0r_A 101 AAVLGLVEPGSEVLLIEPFYDSYSPVVAMAG------------AHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINS 168 (411)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHhcCCCCEEEEeCCCcHhHHHHHHHcC------------CEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeC
Confidence 8 56678999999999999999999988888 57888887643 233333321 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
|+||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++...++++++.|+||.+|++|+|+||++++
T Consensus 169 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 248 (411)
T 2o0r_A 169 PHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGP 248 (411)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeC
Confidence 999999999999999999999999999999999999887653 4566665444577899999999999999999999998
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEE
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 381 (441)
+++ .+.+.........+.+.+.|.++.++++.. .++++++++.++++++.+.+.|++.|+.+..+.+++|+
T Consensus 249 ~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~ 319 (411)
T 2o0r_A 249 AEL--------IAGVRAAKQYLSYVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFL 319 (411)
T ss_dssp HHH--------HHHHHHHHHHHTSCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCBSSEE
T ss_pred HHH--------HHHHHHHHhhccCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCCeeEEE
Confidence 776 455555544444556778888888888633 56788999999999999999999888988777778899
Q ss_pred EEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCC-C----------CCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 382 WVQFPG---SSSWDVFAEILEKTHILTIPGSGFGP-G----------GNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 382 ~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~-~----------~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|++++. .+..++..++++++||.+.||+.|.. . +++++||+++.+++++++++++|++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~ 393 (411)
T 2o0r_A 320 CADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLA 393 (411)
T ss_dssp EEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGG
T ss_pred EEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 999974 45677888888777999999998843 2 467899999888999999999998763
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-46 Score=359.62 Aligned_cols=338 Identities=25% Similarity=0.412 Sum_probs=279.8
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++|+|+.|.++++.|+.+.+++.+.+.. ...+|++..|..++|+++|+|+.+ +..+++++|++|+|+++++
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 102 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKE-----GKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGL 102 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHHc-----CccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHH
Confidence 467999999999887789999999998863 345788778999999999999975 4457889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCcc
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPT 227 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPt 227 (441)
.+ +..++++||+|++++|+|+++...+...| .+++.++.+.+ .+...+ .+++++|++++|||||
T Consensus 103 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~d~~-~l~~~l--~~~~~~v~~~~p~npt 167 (370)
T 2z61_A 103 FFALSSIIDDGDEVLIQNPCYPCYKNFIRFLG------------AKPVFCDFTVE-SLEEAL--SDKTKAIIINSPSNPL 167 (370)
T ss_dssp HHHHHHHCCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECSSHH-HHHHHC--CSSEEEEEEESSCTTT
T ss_pred HHHHHHhcCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEeCCCHH-HHHHhc--ccCceEEEEcCCCCCc
Confidence 98 56678999999999999999999998888 47777772211 111111 2478999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS 307 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~ 307 (441)
|.++|.+ |+++|++||+++|+||+|.++.+++.+.++..+++..+++++++||||.+|++|+|+||+++++++
T Consensus 168 G~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~--- 240 (370)
T 2z61_A 168 GEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEI--- 240 (370)
T ss_dssp CCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHH---
T ss_pred CcccCHH----HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHH---
Confidence 9999966 999999999999999999998876555566666444578899999999999999999999999877
Q ss_pred CCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC
Q 013521 308 NGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG 387 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 387 (441)
.+.+.........+++.+.|.++.++++..+..+++++++.++++++.+.+.|+++|+++..+.+++|+|++++.
T Consensus 241 -----~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 315 (370)
T 2z61_A 241 -----IEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIGE 315 (370)
T ss_dssp -----HHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCBTTEECCBCSS
T ss_pred -----HHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCcceEEEEecCC
Confidence 456666555555568899999888888631356788999999999999999999888888777778999999976
Q ss_pred CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 388 SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 388 ~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+..++...+++++||.+.||+.|+..+++++||++..+++++++++++|++++
T Consensus 316 -~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l 368 (370)
T 2z61_A 316 -DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFL 368 (370)
T ss_dssp -CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 66778888875679999999988754578999999889999999999998763
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=366.26 Aligned_cols=340 Identities=17% Similarity=0.254 Sum_probs=285.2
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~a 147 (441)
.++++|+|+.|++++++++.+.+++.+.+.. ...+|++ .+ .++|+++|+++.+ +..+++++|++|+|++++
T Consensus 21 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a 93 (377)
T 3fdb_A 21 YGQGVLPLWVAESDFSTCPAVLQAITDAVQR-----EAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRG 93 (377)
T ss_dssp SCTTSEECCSSCCCSCCCHHHHHHHHHHHHT-----TCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHH
T ss_pred cCCCeeeecccCCCCCCCHHHHHHHHHHHHc-----CCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHH
Confidence 3568999999999999999999999998863 3457877 67 8999999999975 444788999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..++++||+|+++.|+|+++...+...| .+++.++.+.+ .+++. .+++++++++
T Consensus 94 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~----~d~~~l~~~l~~~~~~v~i~ 157 (377)
T 3fdb_A 94 LYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQ------------REGIFIDATGG----INLHDVEKGFQAGARSILLC 157 (377)
T ss_dssp HHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHT------------CCEEEEECTTS----CCHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcC------------CEEEEccCCCC----CCHHHHHHHhccCCCEEEEe
Confidence 998 67778999999999999999999999998 58899998764 33221 2468999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+||||||.++|.+++++|+++|++||+++|+||+|.++.+++ .+.++..+++ .+++++++||||.+|++|+|+||++
T Consensus 158 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~ 236 (377)
T 3fdb_A 158 NPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA-ASVCITITAPSKAWNIAGLKCAQII 236 (377)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH-HHHEEEEECSTTTTTCGGGCCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccC-CCcEEEEEeChHhccCcchhheEEE
Confidence 999999999999999999999999999999999999988765 3445555432 5778999999999999999999998
Q ss_pred eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeeCCCC
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVNGGKN 377 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 377 (441)
++++.+ .+.+.........+++.+.|.++.+++.+ ..+++++++++++++++.+.+.|+++ ++.+..+.+
T Consensus 237 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 308 (377)
T 3fdb_A 237 FSNPSD-------AEHWQQLSPVIKDGASTLGLIAAEAAYRY-GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQA 308 (377)
T ss_dssp CCSHHH-------HHHHHHSCHHHHCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSB
T ss_pred eCCHHH-------HHHHHHHHHhhcCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCe
Confidence 854332 45565555555566899999988888874 35678999999999999999999985 899888888
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 378 APYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 378 ~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++++|++++. ..+.+++..+++++||.+.||+.|+..+++++||++..+++++++++++|++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l 373 (377)
T 3fdb_A 309 TYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAV 373 (377)
T ss_dssp CSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 8889999974 234577888888789999999999876789999999889999999999998763
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=387.73 Aligned_cols=391 Identities=18% Similarity=0.238 Sum_probs=293.1
Q ss_pred ccchhhhHHhhhhC--------------CC--CCccccccccccc---------------cccccCC-CCchHHHHHHHH
Q 013521 16 KATVPFTMDFFLSS--------------RW--PVPRHCTEVSRNV---------------NMESLQS-GYLFPEISMRES 63 (441)
Q Consensus 16 ~~Tv~~a~~~l~~~--------------g~--~~~~~g~~v~~~~---------------~~~~~~~-~~~~~~~~~~~~ 63 (441)
.-||++++.+|.++ +| ++|++|+||.... .+..++. .++|..+.+...
T Consensus 13 ~~~~~~~~~~~a~~~~~~~~l~~~~~np~~i~~~pr~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (546)
T 2zy4_A 13 PFELKDELIKIASSDGNRLMLNAGRGNPNFLATTPRRAFFRLGLFAAAESELSYSYMTTVGVGGLAKIDGIEGRFERYIA 92 (546)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHCCCCCSEEECHHHHHHHHHHHHHHHHHHTTCCSCCSSCEEECCCSTTHHHHHHHHHH
T ss_pred cHhhHHHHHHHHhhcccceeeeCCCCCchhhccChHHHHHHHHhhhhhhhhhhhhhhhhhhhccCCccccchhHHHHHHH
Confidence 56899999999999 88 9999999997421 1111121 255655554443
Q ss_pred HHHhcCCCC----CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHh-hhC--CC---
Q 013521 64 EHIRKHPDA----RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFY-KDM--GI--- 133 (441)
Q Consensus 64 ~~~~~~~~~----~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~-~~~--~~--- 133 (441)
... ..++. .+++|++|.+++ +++.+.+++.+.+.. .+|+++.|..++|+++++++. ++. ++
T Consensus 93 ~~~-~~~~~~~l~~~i~l~~g~~~~-~~~~~~~al~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 163 (546)
T 2zy4_A 93 ENR-DQEGVRFLGKSLSYVRDQLGL-DPAAFLHEMVDGILG-------CNYPVPPRMLNISEKIVRQYIIREMGADAIPS 163 (546)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHT-------CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCG
T ss_pred hcC-CCCcchhHHhhhecccCCCCC-CChHHHHHHHHhhhc-------CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCC
Confidence 221 11111 278999999877 446666777776531 479888899999999888764 332 22
Q ss_pred CCCcEEEcCCcHHHHHHH-HH-----hcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccC
Q 013521 134 EGDEIFISDGAQSDISRL-QM-----LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFP 207 (441)
Q Consensus 134 ~~~~I~~t~G~~~al~~l-~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 207 (441)
++++|++|+|+++++.++ .. ++++||.|++++|+|+++...+...+. | .+++.++.+++++|..
T Consensus 164 ~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~-g---------~~~~~v~~~~~~~~~~ 233 (546)
T 2zy4_A 164 ESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQY-A---------LEEVAINADPSLNWQY 233 (546)
T ss_dssp GGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTS-C---------CEEEEEECBGGGTTBC
T ss_pred CcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCC-C---------cEEEEEecCcccCCCC
Confidence 468999999999999984 44 478999999999999999887654431 1 4788888887666666
Q ss_pred CCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHH--HHcCcEEEEcccccccccCCCCCcccccCCCcceeEE
Q 013521 208 DLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFA--KANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIE 280 (441)
Q Consensus 208 ~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a--~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~ 280 (441)
+++. .+++++|++||||||||.++|.+++++|+++| +++|++||+||+|+++.++ +.++.... ++++|+
T Consensus 234 d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~--~~s~~~~~--~~~~i~ 309 (546)
T 2zy4_A 234 PDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQSLFAIC--PENTLL 309 (546)
T ss_dssp CHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT--CCCHHHHC--GGGEEE
T ss_pred CHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc--CcCHHHhC--CCCEEE
Confidence 5432 36789999999999999999999999999999 7899999999999988753 45565552 468999
Q ss_pred EecCCcccCCccceeEEEEeecc-ccccCCchhHHHHH-------------HHH-----------------------hhh
Q 013521 281 ISSFSKFAGFTGVRLGWTVVPEE-LRYSNGYPVIKDFN-------------RIV-----------------------CTC 323 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~~~~-~~~~~~~~~~~~~~-------------~~~-----------------------~~~ 323 (441)
++||||.+|++|+|+||++++++ ++ +.+. .+. ...
T Consensus 310 ~~S~SK~~g~~GlRiG~~~~~~~~l~--------~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 381 (546)
T 2zy4_A 310 VYSFSKYFGATGWRLGVVAAHQQNVF--------DLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNH 381 (546)
T ss_dssp EEESTTTTTCGGGCEEEEEEESSCHH--------HHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGG
T ss_pred EEeCccccCCCCcceEEEEECCHHHH--------HHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhc
Confidence 99999999999999999999886 42 2221 000 122
Q ss_pred cCCCcHHHHHHH-----HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC-----------
Q 013521 324 FNGASNIVQAGG-----LACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG----------- 387 (441)
Q Consensus 324 ~~~~~~~~~~a~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~----------- 387 (441)
..+++.+.|.++ .+++.+ +..+.+.+++.|+++++.+.+.|. .++.+.++.+++|+|++++.
T Consensus 382 ~~~~s~~~Q~a~a~~a~~all~~-~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 459 (546)
T 2zy4_A 382 TAGLSTPQQVQMALFSLFALMDE-ADEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFS 459 (546)
T ss_dssp GCSSCHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHH
Confidence 345788888763 244543 346789999999999999999986 55655666789999999852
Q ss_pred ------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 388 ------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 388 ------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
.++.+++.++++++||.+.||+.|+. ++++|||+++. +++++++++++|+++
T Consensus 460 ~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~ 518 (546)
T 2zy4_A 460 EWAVKQSSTGDMLFRIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKM 518 (546)
T ss_dssp HHHHHHCCHHHHHHHHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHH
T ss_pred HHhhccCCHHHHHHHHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHH
Confidence 13456667777788999999999976 56899999976 789999999999875
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-46 Score=365.99 Aligned_cols=341 Identities=25% Similarity=0.380 Sum_probs=283.2
Q ss_pred CCCeEEeCCCCC---CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcH
Q 013521 71 DARLIRLGIGDT---TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~---~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~ 145 (441)
++++++|+.|.+ +++.++.+.+++.+.+.. ...+|++..|..++|+++|+|+.+ ++++++++|++|+|++
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~ 111 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKE-----GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVT 111 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHH
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChH
Confidence 467899999998 778889999999998863 234688778999999999999975 5567889999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEE
Q 013521 146 SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIF 219 (441)
Q Consensus 146 ~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~ 219 (441)
+++.+ +..++++||+|++++|+|+++...+...| .+++.++.++++++..+++. .+++++|+
T Consensus 112 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~ 179 (406)
T 1xi9_A 112 EALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYG------------GKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA 179 (406)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcC------------CEEEEeecCCCcCCcCCHHHHHHhhCcCceEEE
Confidence 99998 56678999999999999999999998888 58888888653344334221 25789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcce-eEEEecCCcccCCccceeEEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV-AIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~-~i~i~S~SK~~~~~G~r~G~l 298 (441)
+++|+||||.++|.+++++|+++|++||++||+||+|.++.+++.+.++..++ +++ +++++||||.+|++|+|+||+
T Consensus 180 i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~ 257 (406)
T 1xi9_A 180 VINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT--KDVPVIVMNGLSKVYFATGWRLGYM 257 (406)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC--SSSCEEEEEESTTTTCCGGGCCEEE
T ss_pred EECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC--CCceEEEEeccccccCCCccEEEEE
Confidence 99999999999999999999999999999999999999988754445666663 567 899999999999899999999
Q ss_pred E--eec----cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 013521 299 V--VPE----ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK 371 (441)
Q Consensus 299 ~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 371 (441)
+ +++ ++ ++.+....... .+++.+.|.++.++++.. .++++++++.++++++.+.+.|+++ ++.
T Consensus 258 ~~~~~~~~~~~l--------~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 327 (406)
T 1xi9_A 258 YFVDPENKLSEV--------REAIDRLARIR-LCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNEIPGIS 327 (406)
T ss_dssp EEECTTCTTHHH--------HHHHHHHHHHT-CCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred EEecCchhHHHH--------HHHHHHHHHhh-cCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 9 887 55 45555544444 567888999888888533 4557889999999999999999988 888
Q ss_pred eeCCCCceEEEEEcC---CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 372 VNGGKNAPYVWVQFP---GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 372 ~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+..+.+++++|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~~l~~~ 399 (406)
T 1xi9_A 328 TTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKF 399 (406)
T ss_dssp CCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHH
T ss_pred eecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHHHHHHH
Confidence 877777889998887 346677888887566999999998876557899999988899999999999875
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-46 Score=364.50 Aligned_cols=344 Identities=16% Similarity=0.242 Sum_probs=285.8
Q ss_pred CeEEeCCCCCC-CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCC-CcEEEcCCcHHHH
Q 013521 73 RLIRLGIGDTT-QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEG-DEIFISDGAQSDI 148 (441)
Q Consensus 73 ~~i~l~~g~~~-~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~-~~I~~t~G~~~al 148 (441)
.+|||+.|++. +++++.+.+++.+.+.. ....+|++..|..++++++++++.+ +..+++ ++|++|+|+++++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~ 115 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQS----GGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL 115 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHH----THHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhc----CCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence 48999999876 78889999999998875 2344688888999999999999976 444445 7999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC----CCCccCCCCC-----CCCccEE
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP----ENNFFPDLST-----TSRTDII 218 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~----~~~~~~~~~~-----~~~~~~v 218 (441)
.+ +..++++||+|+++.|+|+++...++..| .+++.++.+. +.++..+++. ..++++|
T Consensus 116 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 183 (407)
T 3nra_A 116 FLAVAATVARGDKVAIVQPDYFANRKLVEFFE------------GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVF 183 (407)
T ss_dssp HHHHHTTCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEE
T ss_pred HHHHHHhCCCCCEEEEcCCcccchHHHHHHcC------------CEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEE
Confidence 98 56778999999999999999999999998 5888888842 1233334332 2478999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccC-CCcceeEEEecCCcccCCccceeE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIP-GAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~-~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
++++||||||.++|.+++++|+++|++||+++|+||+|+.+.+++. +.++..++ ...+++++++||||.+|++|+|+|
T Consensus 184 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 263 (407)
T 3nra_A 184 LFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLG 263 (407)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCE
T ss_pred EEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEE
Confidence 9999999999999999999999999999999999999999887654 44555554 446789999999999999999999
Q ss_pred EEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCC
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGG 375 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 375 (441)
|+++++++ ++.+.........+++.+.|.++.+++++ ...++++.+++++++++.+.+.|+++ ++.+..+
T Consensus 264 ~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 334 (407)
T 3nra_A 264 VAFGSRAI--------IARMEKLQAIVSLRAAGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFARTP 334 (407)
T ss_dssp EEEECHHH--------HHHHHHHHHHHTSSSCHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCC
T ss_pred EEEcCHHH--------HHHHHHHHhhhccCCChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCceeccC
Confidence 99998877 45666655555566788888888888863 33567888899999999999999988 8888777
Q ss_pred CCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 376 KNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 376 ~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.+++|+|++++. .+..++...|++++||.+.||+.|++.+.+++||++..+++++++++++|++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~ 402 (407)
T 3nra_A 335 QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLV 402 (407)
T ss_dssp SBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 788999999974 466778888877779999999999887889999999889999999999998763
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-46 Score=365.23 Aligned_cols=333 Identities=16% Similarity=0.165 Sum_probs=256.6
Q ss_pred CCCeEEeCCCCC---C--CCCcHHHHHHHHHHH-hhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh--CCCCCCc--EEE
Q 013521 71 DARLIRLGIGDT---T--QPIPDIITSAMAEHA-FALSTVKGYKGYGAEQGNMALRTAIADKFYKD--MGIEGDE--IFI 140 (441)
Q Consensus 71 ~~~~i~l~~g~~---~--~~~~~~~~~al~~~~-~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~--~~~~~~~--I~~ 140 (441)
.+++|||++|.+ + .++++.+.+++. .+ .. ...++|++..|.++||+++++|+.+. ..+++++ |++
T Consensus 28 ~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~ 102 (405)
T 3k7y_A 28 CEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTEN----YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQ 102 (405)
T ss_dssp CSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHH----CCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEE
T ss_pred CcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCC----CCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEE
Confidence 357999999973 2 345778888776 43 22 45678999999999999999999652 2345664 699
Q ss_pred cCCcHHHHHH-HHHhcC--CCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------
Q 013521 141 SDGAQSDISR-LQMLLG--SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------ 211 (441)
Q Consensus 141 t~G~~~al~~-l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------ 211 (441)
|+|+++|+.+ +..+++ | |+|++++|+|++|...++..| .+++.+++.+++++..|++.
T Consensus 103 t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~ 169 (405)
T 3k7y_A 103 CIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRG------------FNLKYINFFDYNLIDINYDLFLNDLR 169 (405)
T ss_dssp EEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTT------------CEEEEECCEETTTTEECHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcC------------CeEEEEeccccccCCcCHHHHHHHHH
Confidence 9999999998 455666 8 999999999999999999999 58999988433345555332
Q ss_pred -CCCccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC---CCcccccCCCcceeEEEecCCc
Q 013521 212 -TSRTDIIFFCSP-NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS---PRSIYEIPGAREVAIEISSFSK 286 (441)
Q Consensus 212 -~~~~~~v~i~~p-~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~---~~~~~~~~~~~~~~i~i~S~SK 286 (441)
.++++++++++| |||||.+++.+++++|+++|++||++||+||+|.+|.+++. +.++..+....+++|+++||||
T Consensus 170 ~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 249 (405)
T 3k7y_A 170 NIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSK 249 (405)
T ss_dssp HSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTT
T ss_pred hCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCc
Confidence 245688888765 99999999999999999999999999999999999987632 1233333333478999999999
Q ss_pred ccCCccceeEEEEee---ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc----H-HHHHHHHHHHHHHH
Q 013521 287 FAGFTGVRLGWTVVP---EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG----F-QALRTVIDYYKENA 358 (441)
Q Consensus 287 ~~~~~G~r~G~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~ 358 (441)
+|+++|+|+||++++ ++++. .+.+.+.......+.+++.+.|.++.+++.+.. + ++++.+++.|+++|
T Consensus 250 ~~~l~GlRiG~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R 325 (405)
T 3k7y_A 250 NMSLYGERAGALHIVCKNQEEKK----IVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNR 325 (405)
T ss_dssp TSCCTTTTEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccceEEEEEeCCHHHHH----HHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999752 33310 011223333344555677899988888887532 2 56788889999999
Q ss_pred HHHHHHHH----hCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHH
Q 013521 359 KIIVDAFQ----SLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREY 429 (441)
Q Consensus 359 ~~l~~~L~----~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~ 429 (441)
+.+.+.|+ ++| +.+.++++|+|+|++++. +++.+| +++||.+.||. |||++. ++++
T Consensus 326 ~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~----~~~~~L-~~~gV~v~p~~----------Ris~a~~~~~~ 390 (405)
T 3k7y_A 326 ILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA----KIAEHL-KTHHIYIINNG----------RINVSGITKNN 390 (405)
T ss_dssp HHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG----GGTTTT-TTTTEECCTTS----------EEEGGGCCTTH
T ss_pred HHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH----HHHHHH-HHCCEeecCCC----------eEEEeccCHHH
Confidence 99999999 776 577788899999998863 455666 78899999952 999965 7899
Q ss_pred HHHHHHHHHhh
Q 013521 430 ISEACRRLKNF 440 (441)
Q Consensus 430 ~~~~l~~l~~~ 440 (441)
+++++++|+++
T Consensus 391 i~~~~~~i~~~ 401 (405)
T 3k7y_A 391 VDYIADKICLS 401 (405)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=359.87 Aligned_cols=343 Identities=17% Similarity=0.276 Sum_probs=285.9
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh--CCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD--MGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~--~~~~~~~I~~t~G~~~al 148 (441)
++++|+|+.|++++++|+.+.+++.+.+.+ ...+|++. ..++++++++++.+. ..+++++|++|+|+++++
T Consensus 26 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~ 98 (391)
T 3dzz_A 26 KEKELPMWIAEMDFKIAPEIMASMEEKLKV-----AAFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAI 98 (391)
T ss_dssp CTTCEECCSSCCSSCCCHHHHHHHHHHHTT-----CCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhc-----CcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHH
Confidence 357999999999999999999999998863 34567554 689999999999864 447899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC-CCCccCCCCC------CCCccEEEE
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP-ENNFFPDLST------TSRTDIIFF 220 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~~------~~~~~~v~i 220 (441)
.+ +..++++||+|+++.|+|+++...+...| .+++.++.+. ++.+..+++. .+++++|++
T Consensus 99 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i 166 (391)
T 3dzz_A 99 SAMVRQFTSPGDQILVQEPVYNMFYSVIEGNG------------RRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVF 166 (391)
T ss_dssp HHHHHHHSCTTCEEEECSSCCHHHHHHHHHTT------------CEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEE
T ss_pred HHHHHHhCCCCCeEEECCCCcHHHHHHHHHcC------------CEEEEeeeeecCCceeecHHHHHHHHhccCceEEEE
Confidence 97 67778999999999999999999999888 5888888862 3333344322 268999999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCC-CcceeEEEecCCcccCCccceeEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++||||||.++|.+++++|+++|++||+++|+||+|+++.+.+ .+.++..+.. .+++++++.|+||.+|++|+|+||+
T Consensus 167 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~ 246 (391)
T 3dzz_A 167 CNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACA 246 (391)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEE
T ss_pred ECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEE
Confidence 9999999999999999999999999999999999999988765 3556666532 2578999999999999999999999
Q ss_pred Eee-ccccccCCchhHHHHHHHHh-hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeeC
Q 013521 299 VVP-EELRYSNGYPVIKDFNRIVC-TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-L-GLKVNG 374 (441)
Q Consensus 299 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~ 374 (441)
+++ +++ .+.+..... ....+++.+.+.++.+++.+ ...++++++++++++++.+.+.|++ + |+.+..
T Consensus 247 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 317 (391)
T 3dzz_A 247 IIPNPDL--------RARAEESFFLAGIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD 317 (391)
T ss_dssp ECCSHHH--------HHHHHHHHHHHTCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred EECCHHH--------HHHHHHHHHhhccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec
Confidence 998 555 455554433 33445788888888888874 4567899999999999999999998 4 899888
Q ss_pred CCCceEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+.+++++|++++ +.+..++.+.+++++||.+.||+.|+..+++++||++..+++++++++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 386 (391)
T 3dzz_A 318 SNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGV 386 (391)
T ss_dssp CCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred cCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 888889999997 3567788888876679999999999877789999999889999999999998763
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=356.72 Aligned_cols=340 Identities=21% Similarity=0.321 Sum_probs=281.2
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++++|+.|.++++.++.+.+++ +.+. ....+|++..|..++|+++|+|+.+ ++++++++|++|+|+++++
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~-----~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENK-----PEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTC-----CSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 467999999999887888899999 7764 2345788778999999999999975 4457789999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCcc-C-CCCC--CCCccEEEEcCC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFF-P-DLST--TSRTDIIFFCSP 223 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~-~-~~~~--~~~~~~v~i~~p 223 (441)
.+ +..++++||+|+++.|+|+++...+...| .+++.++.++++++. + ++++ .+++++|++++|
T Consensus 116 ~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p 183 (409)
T 2gb3_A 116 LFSFAVIANPGDEILVLEPFYANYNAFAKIAG------------VKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNP 183 (409)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTHHHHHHHHHT------------CEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESS
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCC
Confidence 98 66778999999999999999999998888 588888887533443 2 2322 257899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec-
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE- 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~- 302 (441)
+||||.++|.+++++|+++|++||+++|+||+|+.+.+++.+.++ +.+..+++++++||||.+|++|+|+||+++++
T Consensus 184 ~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 261 (409)
T 2gb3_A 184 CNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA--LSIESDKVVVIDSVSKKFSACGARVGCLITRNE 261 (409)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG--GGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc--cccCCCCEEEEecchhccCCccceEEEEEECcH
Confidence 999999999999999999999999999999999988776544443 22224568999999999999999999999998
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee-eCCCCceEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV-NGGKNAPYV 381 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~ 381 (441)
++ .+.+........ +++.+.|.++.++++. +..+++++++.++++++.+.+.|+++|+.+ ..+.+++++
T Consensus 262 ~l--------~~~l~~~~~~~~-~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 331 (409)
T 2gb3_A 262 EL--------ISHAMKLAQGRL-APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYI 331 (409)
T ss_dssp HH--------HHHHHHHHHHSC-CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEE
T ss_pred HH--------HHHHHHHHhccC-CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCeeEEE
Confidence 66 455555444444 6889999999999974 456788999999999999999999888887 666778999
Q ss_pred EEEcCCCChHHHHHHHHHh-----cCeEEeCCCCcCC---CCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 382 WVQFPGSSSWDVFAEILEK-----THILTIPGSGFGP---GGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 382 ~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~---~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
|+++++.+..++...++++ +||.+.||..|+. .+++++||++..+++++++++++|+++
T Consensus 332 ~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~ 398 (409)
T 2gb3_A 332 TAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEG 398 (409)
T ss_dssp EEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHH
Confidence 9999755667788888776 5999999998864 347899999988899999999999875
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-45 Score=359.18 Aligned_cols=346 Identities=21% Similarity=0.331 Sum_probs=278.5
Q ss_pred CCeEEeCCCCC----CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHh-------h-hCCCCCCcEE
Q 013521 72 ARLIRLGIGDT----TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFY-------K-DMGIEGDEIF 139 (441)
Q Consensus 72 ~~~i~l~~g~~----~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~-------~-~~~~~~~~I~ 139 (441)
.++|+|+.|.| ++++++.+.+++.+.+.. ....+|++..|..++|+++|+|+. + +..+++++|+
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~ 108 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS----QECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV 108 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT----TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhC----CccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEE
Confidence 46899999986 467889999999998864 334578877899999999999997 3 4447889999
Q ss_pred EcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC
Q 013521 140 ISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS 213 (441)
Q Consensus 140 ~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~ 213 (441)
+|+|+++++.+ +..++++||+|++++|+|+++...+...| .+++.++.++++++..+++. .+
T Consensus 109 ~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~ 176 (416)
T 1bw0_A 109 LCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYG------------IGMHFYNCRPENDWEADLDEIRRLKDD 176 (416)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEEEGGGTTEECHHHHHHHCCT
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcC------------cEEEEeecCcccCCCCCHHHHHHHhcc
Confidence 99999999997 66778999999999999999999998888 58888887654344444322 25
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-----CCcccccCCCcceeEEEecCCccc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-----PRSIYEIPGAREVAIEISSFSKFA 288 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-----~~~~~~~~~~~~~~i~i~S~SK~~ 288 (441)
+++++++++|+||||.++|.+++++|+++|++||++||+||+|.++.+++. ..++..++. .+++++++||||.+
T Consensus 177 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~ 255 (416)
T 1bw0_A 177 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFET-TVPRVILGGTAKNL 255 (416)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCC-SCCEEEEEESTTTT
T ss_pred CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccC-CCcEEEEecchhhC
Confidence 788999999999999999999999999999999999999999999877643 334444432 34689999999999
Q ss_pred CCccceeEEEEeecc--ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013521 289 GFTGVRLGWTVVPEE--LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 289 ~~~G~r~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+++|+|+||++++++ ++. .+...+..... ...+++.+.|.++.++++.....++++.+++++++++.+.+.|+
T Consensus 256 ~~~Glr~G~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (416)
T 1bw0_A 256 VVPGWRLGWLLYVDPHGNGP----SFLEGLKRVGM-LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIG 330 (416)
T ss_dssp SCGGGCCEEEEEECTTCSCH----HHHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEEEeeCchhhHH----HHHHHHHHHhc-cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999875 421 01112222211 23457889999999988754456788999999999999999999
Q ss_pred hC-CCeeeCCCCceEEEEEcCC------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 367 SL-GLKVNGGKNAPYVWVQFPG------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 367 ~~-g~~~~~~~~~~~~~~~~~~------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
++ |+.+..+.+|+|+|++++. .+..++...+++++||.+.||+.|+. ++++||++..+++++++++++|.+
T Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~~~~e~l~~~l~~l~~ 408 (416)
T 1bw0_A 331 ECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTTRPVEVYREAVERIKA 408 (416)
T ss_dssp TSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCSCHHHHHHHHHHHHH
T ss_pred hCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEecCCHHHHHHHHHHHHH
Confidence 87 8887766779999999862 35667778887677999999998864 579999998789999999999987
Q ss_pred hC
Q 013521 440 FL 441 (441)
Q Consensus 440 ~l 441 (441)
++
T Consensus 409 ~l 410 (416)
T 1bw0_A 409 FC 410 (416)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=365.65 Aligned_cols=351 Identities=18% Similarity=0.152 Sum_probs=284.3
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++|+|+.|++++++++.+.+++.+.+.. ....+|++..|..++|+++|+++.+ +..+++++|++|+|+++++
T Consensus 43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al 118 (437)
T 3g0t_A 43 GTKFCRMEMGVPGLPAPQIGIETEIQKLRE----GVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGC 118 (437)
T ss_dssp TCCCEECCCCSCCSCCCHHHHHHHHHHHHH----TGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEeccCcCCCCCCCHHHHHHHHHHHhC----CcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHH
Confidence 467999999999999999999999998874 2336798888999999999999975 5557889999999999999
Q ss_pred HH-HHHhc--CCCC--EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C---CCCccE
Q 013521 149 SR-LQMLL--GSNV--TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T---TSRTDI 217 (441)
Q Consensus 149 ~~-l~~l~--~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~---~~~~~~ 217 (441)
.+ +..++ ++|| +|+++.|+|+++...+...| .+++.+++++ +++..|++ + .+++++
T Consensus 119 ~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~~ 185 (437)
T 3g0t_A 119 FVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILG------------QKFESFDLFE-YRGEKLREKLESYLQTGQFCS 185 (437)
T ss_dssp HHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHT------------CCCEEEEGGG-GCTTHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcC------------CEEEEEeecC-CCCccCHHHHHHHHhcCCceE
Confidence 98 56777 9999 99999999999999999998 5888999874 34333322 1 368999
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc-------cccCCCcceeEEEecCCcccCC
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI-------YEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~-------~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
|++++||||||.++|.+++++|+++|++||++||+||+|+++.+++ ..++ ..+++..+++++++|+||.+|+
T Consensus 186 v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 264 (437)
T 3g0t_A 186 IIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGEPLYQPSVANYTDNYILALSSSKAFSY 264 (437)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTS-CCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSC
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCC-CcCcccccchhhccCCCCCcEEEEEcCccCCCC
Confidence 9999999999999999999999999999999999999999887763 2223 4444346788999999999999
Q ss_pred ccceeEEEEeeccccccCCchhHHH----------HHHHHhhhcCCCcHHHHHHHHHhcCCCc-H-HHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKD----------FNRIVCTCFNGASNIVQAGGLACLSPDG-F-QALRTVIDYYKENA 358 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~-~~~~~~~~~~~~~~ 358 (441)
+|+|+||++++++++......+... +.........+++.+.|.++.+++++.. + .+++++++++++++
T Consensus 265 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 344 (437)
T 3g0t_A 265 AGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKA 344 (437)
T ss_dssp GGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred ccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHH
Confidence 9999999999987742000000000 4444444455688999999998887421 1 12789999999999
Q ss_pred HHHHHHHHhCCCeee-------CCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHH
Q 013521 359 KIIVDAFQSLGLKVN-------GGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYI 430 (441)
Q Consensus 359 ~~l~~~L~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~ 430 (441)
+.+.+.|+++|+.+. ++.+++|+|+++++.+..++.+.|+++ ||.+.||..|+...++++||+++. +++++
T Consensus 345 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~v~~~~~~~~~~~~~iRis~~~~~~e~i 423 (437)
T 3g0t_A 345 RIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRY-GMCAITLKTTGSKRNEAMRICTSLLPESQF 423 (437)
T ss_dssp HHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHT-TEECEESTTTTCCCTTCEEEECSSSCGGGH
T ss_pred HHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHc-CeEEeeccccCCCCCCEEEEEEecCCHHHH
Confidence 999999999888887 337899999999866777888887765 999999998876555889999865 88999
Q ss_pred HHHHHHHHhh
Q 013521 431 SEACRRLKNF 440 (441)
Q Consensus 431 ~~~l~~l~~~ 440 (441)
++++++|+++
T Consensus 424 ~~~~~~l~~~ 433 (437)
T 3g0t_A 424 PDLEKRLQML 433 (437)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=364.91 Aligned_cols=341 Identities=20% Similarity=0.309 Sum_probs=267.9
Q ss_pred CCeEEeCCCCCCCCCcHH-HH-HHH---------HHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC------
Q 013521 72 ARLIRLGIGDTTQPIPDI-IT-SAM---------AEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE------ 134 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~-~~-~al---------~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~------ 134 (441)
+++|+|+.|.|+...++. .+ .++ .+.. ....+|++..|..+||+++++++.+..+++
T Consensus 31 ~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~ 104 (425)
T 2r2n_A 31 KSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMM------KRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPP 104 (425)
T ss_dssp TTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHH------HHHTSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCG
T ss_pred CCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccch------hhhcCCCCCCCCHHHHHHHHHHHHHhcCCCCccccc
Confidence 468999999987542221 00 000 0001 112469899999999999999997644443
Q ss_pred ---CCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-C
Q 013521 135 ---GDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-L 209 (441)
Q Consensus 135 ---~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~ 209 (441)
+++|++|+|+++++.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ +++++ +
T Consensus 105 ~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-~~d~~~l 171 (425)
T 2r2n_A 105 SQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLG------------CNIINVASDES-GIVPDSL 171 (425)
T ss_dssp GGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGT------------CEEEEECEETT-EECHHHH
T ss_pred cCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC------------CEEEEeCcCCC-CCCHHHH
Confidence 3699999999999998 67778999999999999999999998888 58888888653 33222 1
Q ss_pred CC--------------CCCccEEEE-cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC
Q 013521 210 ST--------------TSRTDIIFF-CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG 273 (441)
Q Consensus 210 ~~--------------~~~~~~v~i-~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~ 273 (441)
++ .+++++|++ ++||||||.++|.+++++|+++|++||++||+||+|+++.+++. +.++..++
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~- 250 (425)
T 2r2n_A 172 RDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMD- 250 (425)
T ss_dssp HHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGC-
T ss_pred HHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccC-
Confidence 11 136888877 48999999999999999999999999999999999999887653 45666664
Q ss_pred CcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC---CcH-HHHHH
Q 013521 274 AREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP---DGF-QALRT 349 (441)
Q Consensus 274 ~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~-~~~~~ 349 (441)
..+++++++||||+++ +|+|+||+++++++ ++.+.........+++.+.|.++.+++++ .++ +++++
T Consensus 251 ~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l--------~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 321 (425)
T 2r2n_A 251 VDGRVIRADSFSKIIS-SGLRIGFLTGPKPL--------IERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDR 321 (425)
T ss_dssp TTSCEEEEEESTTTTC-STTCCEEEEEEHHH--------HHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEccchhhcc-CccceEEEecCHHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3568999999999998 99999999999887 46666666655567899999999999874 222 67899
Q ss_pred HHHHHHHHHHHHHHHHHhC--CC-eeeCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCC---CCCeEEEE
Q 013521 350 VIDYYKENAKIIVDAFQSL--GL-KVNGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPG---GNEHIRVS 422 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~---~~~~iRls 422 (441)
+++.++++++.+.+.|+++ |+ .+..+.+|+|+|++++. .++.+++...+.++||.+.||+.|+.. +.+++||+
T Consensus 322 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis 401 (425)
T 2r2n_A 322 VIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRAS 401 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEE
Confidence 9999999999999999885 76 45666789999999984 345565455555679999999999743 35899999
Q ss_pred ee-cCHHHHHHHHHHHHhhC
Q 013521 423 AF-GHREYISEACRRLKNFL 441 (441)
Q Consensus 423 ~~-~~~~~~~~~l~~l~~~l 441 (441)
++ .+++++++++++|++++
T Consensus 402 ~~~~~~~~i~~~~~~l~~~l 421 (425)
T 2r2n_A 402 FSSASPEQMDVAFQVLAQLI 421 (425)
T ss_dssp CSSCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 86 68999999999998753
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-45 Score=356.55 Aligned_cols=343 Identities=19% Similarity=0.294 Sum_probs=284.6
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~t~G~~~al 148 (441)
+.++++|+.|++++++|+.+.+++.+.+.. ...+|++ +..++++++++++.+.++ +++++|++|+|+++++
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~ 103 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLEQ-----EIYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAI 103 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHTT-----CCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhC-----CCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHH
Confidence 357999999999999999999999998863 3446644 669999999999987545 7899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecC--CCCCccCCCCC----CCCccEEEEc
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCR--PENNFFPDLST----TSRTDIIFFC 221 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~~~----~~~~~~v~i~ 221 (441)
.+ +..++++||+|+++.|+|+++...+...| .+++.++.+ .++.+..+++. ..++++|+++
T Consensus 104 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~v~i~ 171 (391)
T 4dq6_A 104 SLLINELTKANDKIMIQEPVYSPFNSVVKNNN------------RELIISPLQKLENGNYIMDYEDIENKIKDVKLFILC 171 (391)
T ss_dssp HHHHHHHSCTTCEEEECSSCCTHHHHHHHHTT------------CEEEECCCEECTTSCEECCHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcC------------CeEEeeeeeecCCCceEeeHHHHHHHhhcCCEEEEE
Confidence 97 67778999999999999999999999888 588999887 34444444332 1228999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC-CcceeEEEecCCcccCCccceeEEEE
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..+.. ..++++++.|+||.+|++|+|+||++
T Consensus 172 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 251 (391)
T 4dq6_A 172 NPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVV 251 (391)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEE
Confidence 9999999999999999999999999999999999999887653 445555532 13678999999999999999999999
Q ss_pred eec-cccccCCchhHHHHHHHHh-hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeeCC
Q 013521 300 VPE-ELRYSNGYPVIKDFNRIVC-TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVNGG 375 (441)
Q Consensus 300 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~ 375 (441)
+++ ++ .+.+..... ....+++.+.+.++.+++.+ ..+++++++++++++++.+.+.|++. ++.+..+
T Consensus 252 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 322 (391)
T 4dq6_A 252 LPDEKD--------YKLLDDAFTRIDIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVRKP 322 (391)
T ss_dssp CCSHHH--------HHHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCC
T ss_pred eCCHHH--------HHHHHHHHHhhcCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCC
Confidence 987 55 455554433 23446788899888888874 34678999999999999999999884 8998888
Q ss_pred CCceEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 376 KNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 376 ~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.+++++|++++ +.+..++.+.|++++||.+.||+.|+..+.+++||++..+++++++++++|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 323 EGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp SBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 88889999997 4567788888777669999999999887789999999889999999999998864
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=370.48 Aligned_cols=332 Identities=21% Similarity=0.319 Sum_probs=262.0
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh---CCCCCCcEEEcCCcHHHHHH-HHHhcCCCC---
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD---MGIEGDEIFISDGAQSDISR-LQMLLGSNV--- 159 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~---~~~~~~~I~~t~G~~~al~~-l~~l~~~gd--- 159 (441)
|..+++++.+++..... ....+|++..|..++|++||+|+.+. +.+++++|++|+|+++++.+ +..++++||
T Consensus 103 P~~~~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~ 181 (498)
T 3ihj_A 103 PEDAKKRARRILQACGG-NSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSR 181 (498)
T ss_dssp CHHHHHHHHHHHHHC-----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGS
T ss_pred CHHHHHHHHHHHHhccC-CCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCC
Confidence 56666777777765321 24568999999999999999999753 55789999999999999998 566778875
Q ss_pred -EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC-----C-----CccEEEEcCCCCccc
Q 013521 160 -TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT-----S-----RTDIIFFCSPNNPTG 228 (441)
Q Consensus 160 -~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-----~-----~~~~v~i~~p~NPtG 228 (441)
.|+++.|+|+.+...+...| .+++.++++++++|.+|++.. + ++++|+++|||||||
T Consensus 182 d~Vlv~~p~y~~~~~~~~~~g------------~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG 249 (498)
T 3ihj_A 182 TGVMIPIPQYPLYSAVISELD------------AIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTG 249 (498)
T ss_dssp EEEEEEESCCTHHHHHHHHTT------------CEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTC
T ss_pred CEEEEeCCCchhHHHHHHHcC------------CEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCC
Confidence 99999999999999999998 589999998776676664431 1 589999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccccCC-------CcceeEEEecCCccc-CCccceeEEE
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYEIPG-------AREVAIEISSFSKFA-GFTGVRLGWT 298 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~~~~-------~~~~~i~i~S~SK~~-~~~G~r~G~l 298 (441)
.++|.+++++|+++|++||++||+||+|.++.+++ .+.++..+.. ...++|+++||||.+ |++|+|+||+
T Consensus 250 ~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~ 329 (498)
T 3ihj_A 250 QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYM 329 (498)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEE
T ss_pred CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEE
Confidence 99999999999999999999999999999998864 3455554311 123479999999999 7899999999
Q ss_pred E---eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC-----CcH----HHHHHHHHHHHHHHHHHHHHHH
Q 013521 299 V---VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP-----DGF----QALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 299 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-----~~~----~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+ .++++ ++.+..... ...+++.+.|.++.+++.. ..+ ++.+.+++.++++++.+.+.|+
T Consensus 330 ~~~~~~~~l--------~~~l~~~~~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 400 (498)
T 3ihj_A 330 EVINLHPEI--------KGQLVKLLS-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFN 400 (498)
T ss_dssp EEESCCHHH--------HHHHHHHHH-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCHHH--------HHHHHHHHh-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 45555 455555544 4556789999988888864 122 3456788999999999999999
Q ss_pred hC-CCeeeCCCCceEEEEEcC------------CCChHHH-HHHHHHhcCeEEeCCCCcCC-CCCCeEEEEeecCHHHHH
Q 013521 367 SL-GLKVNGGKNAPYVWVQFP------------GSSSWDV-FAEILEKTHILTIPGSGFGP-GGNEHIRVSAFGHREYIS 431 (441)
Q Consensus 367 ~~-g~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~~~~~~~~ 431 (441)
++ |+++.++.+++|+|++++ +..+.++ +..+++++||.+.||+.|+. .+.+++|+++..++++++
T Consensus 401 ~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~ 480 (498)
T 3ihj_A 401 QVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLK 480 (498)
T ss_dssp TSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHH
T ss_pred cCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHH
Confidence 98 999988889999998764 2233444 67788888999999999984 567899999988899999
Q ss_pred HHHHHHHhh
Q 013521 432 EACRRLKNF 440 (441)
Q Consensus 432 ~~l~~l~~~ 440 (441)
+++++|+++
T Consensus 481 ~~i~~L~~~ 489 (498)
T 3ihj_A 481 TVLQKVKDF 489 (498)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-45 Score=355.46 Aligned_cols=338 Identities=17% Similarity=0.272 Sum_probs=273.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHH-HHHHHHHHHhhhCC--CCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMA-LRTAIADKFYKDMG--IEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~-lr~~ia~~l~~~~~--~~~~~I~~t~G~~~al~ 149 (441)
++|+|+.+++++++|+.+.+++.+.+.. ...+|++. ..+ +|+++|+++.+.++ +++++|++|+|+++++.
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~ 101 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMH-----GVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVS 101 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTT-----CCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhC-----CCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHH
Confidence 6899999999888899999999998752 34578654 778 99999999976444 78899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCC-CccCCCCC-----C-CCccEEEEc
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDLST-----T-SRTDIIFFC 221 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~-----~-~~~~~v~i~ 221 (441)
+ +..++++||+|+++.|+|+++...+...| .+++.++.+.++ .+..+++. . .++++|+++
T Consensus 102 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~ 169 (390)
T 1d2f_A 102 ELIRQWSETGEGVVIHTPAYDAFYKAIEGNQ------------RTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLC 169 (390)
T ss_dssp HHHHHSSCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEE
T ss_pred HHHHHhcCCCCEEEEcCCCcHHHHHHHHHCC------------CEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEe
Confidence 7 56677999999999999999999998888 588888886543 33344322 1 378999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCc-ceeEEEecCCcccCCccceeEEEE
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAR-EVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~-~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++... + . +.||||.+|++|+|+||++
T Consensus 170 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d--~-~~s~sK~~~~~G~r~G~~~ 246 (390)
T 1d2f_A 170 SPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWA--L-LTSGSKSFNIPALTGAYGI 246 (390)
T ss_dssp SSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEE--E-EECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHh--h-ccCccHhhcccChhheEEE
Confidence 9999999999999999999999999999999999999887643 44555553211 3 3 9999999999999999999
Q ss_pred eec-cccccCCchhHHHHHHHHh--hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeeC
Q 013521 300 VPE-ELRYSNGYPVIKDFNRIVC--TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-L-GLKVNG 374 (441)
Q Consensus 300 ~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~ 374 (441)
+++ ++ .+.+..... ..+.+++.+.|.++.+++++ ..+++++.++.++++++.+.+.|++ + ++.+.+
T Consensus 247 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 317 (390)
T 1d2f_A 247 IENSSS--------RDAYLSALKGRDGLSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQI 317 (390)
T ss_dssp ECSHHH--------HHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred ECCHHH--------HHHHHHHHhhhcccCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEec
Confidence 974 44 455555443 23336788999888888873 3467889999999999999999998 5 888777
Q ss_pred CCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+.+++++|++++. .+..++...+++++||.+.||+.|+..+++++||++..+++++++++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l 386 (390)
T 1d2f_A 318 PQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAI 386 (390)
T ss_dssp CSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 7777889999974 466778888876679999999998755678999999888899999999998763
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-45 Score=357.97 Aligned_cols=341 Identities=16% Similarity=0.203 Sum_probs=278.1
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~ 149 (441)
+++++|+.|++++++++.+.+++.+.+.. ...+|++. ..++|+++++++.+ +.++++++|++|+|+++++.
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~ 103 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDE-----TVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVF 103 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHH-----CCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhc-----CCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHH
Confidence 36899999999888899999999998863 23467553 89999999999976 33478899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC-CCccCCCCC------CCCccEEEEc
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE-NNFFPDLST------TSRTDIIFFC 221 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~~------~~~~~~v~i~ 221 (441)
+ +..++++||+|+++.|+|+++...+...| .+++.++.+++ +.+..+++. .+++++|+++
T Consensus 104 ~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~ 171 (399)
T 1c7n_A 104 NAVREFTKPGDGVIIITPVYYPFFMAIKNQE------------RKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFC 171 (399)
T ss_dssp HHHHHHCCTTCEEEECSSCCTHHHHHHHTTT------------CEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEE
T ss_pred HHHHHhcCCCCEEEEcCCCcHhHHHHHHHcC------------CEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEc
Confidence 8 67778999999999999999999888888 58888887532 233344322 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC-CcceeEEEecCCcccCCccceeEEEE
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++. ..++++++.|+||.+|++|+|+||++
T Consensus 172 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 251 (399)
T 1c7n_A 172 SPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNII 251 (399)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEE
Confidence 9999999999999999999999999999999999999887653 445555531 13578999999999999999999999
Q ss_pred eecc-ccccCCchhHHHHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCC
Q 013521 300 VPEE-LRYSNGYPVIKDFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-L-GLKVNGG 375 (441)
Q Consensus 300 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~ 375 (441)
++++ + .+.+....... ..+++.+.|.++.+++++ ..+++++.++.++++++.+.+.|++ + ++.+.++
T Consensus 252 ~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 322 (399)
T 1c7n_A 252 IKNPDI--------RERFTKSRDATSGMPFTTLGYKACEICYKE-CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI 322 (399)
T ss_dssp CCCHHH--------HHHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC
T ss_pred ECCHHH--------HHHHHHHHhhcccCCCCHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecC
Confidence 9754 5 45555544433 235788999988888874 2567899999999999999999998 5 8888777
Q ss_pred CCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 376 KNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 376 ~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
.+++++|++++. .+..++...+++++||.+.||+.|++.+++++||++...++++++++++|+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (399)
T 1c7n_A 323 EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKA 389 (399)
T ss_dssp SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHH
Confidence 778889999973 46677888877677999999999876567899999987889999999999875
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=350.69 Aligned_cols=332 Identities=25% Similarity=0.387 Sum_probs=275.1
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
++++|+.|.+++++|+.+.+++.+.+.. ..+|++..|..++|+++++++ ++++++|++|+|+++++.+ +
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~~~y~~~~~~~~l~~~la~~~----~~~~~~v~~~~g~~~a~~~~~ 95 (381)
T 1v2d_A 26 GAVNLGQGFPSNPPPPFLLEAVRRALGR------QDQYAPPAGLPALREALAEEF----AVEPESVVVTSGATEALYVLL 95 (381)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTTT------SCSCCCTTCCHHHHHHHHHHH----TSCGGGEEEESSHHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHH------hcCCCCCCCCHHHHHHHHHhc----CCChhhEEEcCChHHHHHHHH
Confidence 5899999999888899999999998753 346877779999999999996 7888999999999999998 5
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecC--CCCCccCCCC---C--CCCccEEEEcCCC
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCR--PENNFFPDLS---T--TSRTDIIFFCSPN 224 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~~---~--~~~~~~v~i~~p~ 224 (441)
..++++||+|++++|+|+++...++..| .+++.++.+ ++ ++..+++ + .+++++|++++||
T Consensus 96 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~ 162 (381)
T 1v2d_A 96 QSLVGPGDEVVVLEPFFDVYLPDAFLAG------------AKARLVRLDLTPE-GFRLDLSALEKALTPRTRALLLNTPM 162 (381)
T ss_dssp HHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEEETT-EEECCHHHHHTTCCTTEEEEEEESSC
T ss_pred HHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEeCCCCCc-cCCcCHHHHHHhcCcCCEEEEECCCC
Confidence 6778999999999999999999888888 588888876 22 2223321 1 3578999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.++|.+++++|+++|++||+++|+||+|.++.++..+.++..+ ..++++++.|+||.+|++|+|+||+++++++
T Consensus 163 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~ 240 (381)
T 1v2d_A 163 NPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF--APERTFTVGSAGKRLEATGYRVGWIVGPKEF 240 (381)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEECCTTT
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh--cCCCEEEEeechhhcCCcccceEEEEeCHHH
Confidence 99999999999999999999999999999999988763334455554 3467899999999999999999999998877
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-FQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWV 383 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 383 (441)
.+.+.........+.+.+.|.++.++++... .+++++++++++++++++.+.|++.|+++..+.+++|+|+
T Consensus 241 --------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 312 (381)
T 1v2d_A 241 --------MPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMA 312 (381)
T ss_dssp --------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEE
T ss_pred --------HHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCcceEEEE
Confidence 4556555554455678899988888886321 3567889999999999999999998998887777899999
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCC--CCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGP--GGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+++..+ +..+++++||.+.||+.|+. .+.+++||++..+++++++++++|++++
T Consensus 313 ~~~~~~----~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l 368 (381)
T 1v2d_A 313 ELPGWD----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368 (381)
T ss_dssp ECTTCC----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred ecChHh----HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 997532 56667777999999998864 3568999999779999999999998864
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=356.96 Aligned_cols=343 Identities=19% Similarity=0.277 Sum_probs=287.3
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh--CCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD--MGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~--~~~~~~~I~~t~G~~~al 148 (441)
++++|+|+.++++++.++.+.+++.+.+.. ....|++. ..++++++++++.+. +.+++++|++|+|+++++
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~ 132 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGRE-----HIFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAI 132 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHH-----CCSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhc-----CCcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHH
Confidence 467999999999999999999999998864 33466543 389999999999864 447899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecC-CCCCccCCCCC-----C-CCccEEEE
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCR-PENNFFPDLST-----T-SRTDIIFF 220 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~-~~~~~~~~~~~-----~-~~~~~v~i 220 (441)
++ +..++++||+|+++.|+|+++...+...| .+++.+|++ .++.+..|++. . +++++|++
T Consensus 133 ~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil 200 (421)
T 3l8a_A 133 SIALQAFSEKGDAVLINSPVYYPFARTIRLND------------HRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLL 200 (421)
T ss_dssp HHHHHHHSCTEEEEEEEESCCHHHHHHHHHTT------------EEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHhcCCCCEEEECCCCcHHHHHHHHHCC------------CEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEE
Confidence 97 67778999999999999999999999888 588888876 34444445332 2 68999999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC-CcceeEEEecCCcccCCccceeEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++||||||.++|.+++++|+++|++||+++|+||+|.++.+.+. +.++..++. ..++++++.|+||.+|++|+|+||+
T Consensus 201 ~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~ 280 (421)
T 3l8a_A 201 CSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFA 280 (421)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEE
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeE
Confidence 99999999999999999999999999999999999999888653 445655532 3478899999999999999999999
Q ss_pred Eee-ccccccCCchhHHHHHHHH-hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCC
Q 013521 299 VVP-EELRYSNGYPVIKDFNRIV-CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGG 375 (441)
Q Consensus 299 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 375 (441)
+++ +++ .+.+.... .....+.+++.+.++.++++. ..++++++++.++++++++.+.|+++ ++.+..+
T Consensus 281 ~~~~~~l--------~~~~~~~~~~~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~ 351 (421)
T 3l8a_A 281 IIQNESL--------RRKFQYRQLANNQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEP 351 (421)
T ss_dssp ECCSHHH--------HHHHHHHHHHTTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECC
T ss_pred EcCCHHH--------HHHHHHHHHhcccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCC
Confidence 998 555 45555444 334446888999988888873 45778999999999999999999986 8998888
Q ss_pred CCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 376 KNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 376 ~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.+++++|++++. .+..++...+++++||.+.||+.|+..+++++||++..+++++++++++|++++
T Consensus 352 ~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l 419 (421)
T 3l8a_A 352 EGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVF 419 (421)
T ss_dssp SBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred CeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 888899999973 466788888887789999999999877789999999889999999999999875
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-44 Score=358.81 Aligned_cols=333 Identities=22% Similarity=0.308 Sum_probs=268.3
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHHH-HHHhc-CCCCEE
Q 013521 86 IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDISR-LQMLL-GSNVTV 161 (441)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~~-l~~l~-~~gd~V 161 (441)
.|..++++..+.+.... .....+|++..|..++|+++++++.+ ++.+++++|++|+|+++++.+ +..++ ++||.|
T Consensus 107 ~p~~~~~~a~~~l~~~~-~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V 185 (500)
T 3tcm_A 107 FSADSISRAKQILAMIP-GRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGI 185 (500)
T ss_dssp SCHHHHHHHHHHHTTST-TSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEE
T ss_pred CCHHHHHHHHHHHHcCC-CCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEE
Confidence 45666777777665431 02567899999999999999999975 566889999999999999998 56666 799999
Q ss_pred EEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C------CCccEEEEcCCCCccccC
Q 013521 162 AVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T------SRTDIIFFCSPNNPTGHA 230 (441)
Q Consensus 162 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~------~~~~~v~i~~p~NPtG~~ 230 (441)
+++.|+|+++...+...| .+++.++++++++|..+++. . .++++|+++|||||||.+
T Consensus 186 lv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~ 253 (500)
T 3tcm_A 186 LVPIPQYPLYSASIALHG------------GALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQV 253 (500)
T ss_dssp EEEESCCTHHHHHHHHTT------------CEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCC
T ss_pred EEeCCCcHhHHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCccc
Confidence 999999999999999999 58999999887666666442 1 268999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccc----cC--CCcceeEEEecCCccc-CCccceeEEEEe-
Q 013521 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYE----IP--GAREVAIEISSFSKFA-GFTGVRLGWTVV- 300 (441)
Q Consensus 231 ~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~----~~--~~~~~~i~i~S~SK~~-~~~G~r~G~l~~- 300 (441)
+|.+++++|+++|++||+++|+||+|+++.+++ ...++.. +. ....++++++||||.+ |++|+|+||+++
T Consensus 254 ~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 333 (500)
T 3tcm_A 254 LAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEIT 333 (500)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEe
Confidence 999999999999999999999999999988853 2344432 21 1223579999999999 899999999998
Q ss_pred --eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc--------H-HHHHHHHHHHHHHHHHHHHHHHhC-
Q 013521 301 --PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG--------F-QALRTVIDYYKENAKIIVDAFQSL- 368 (441)
Q Consensus 301 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~-~~~~~~~~~~~~~~~~l~~~L~~~- 368 (441)
++++ ++.+..... ...+++.+.|.++..++.... + ++++.+++.++++++.+.+.|+++
T Consensus 334 ~~~~~~--------~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~ 404 (500)
T 3tcm_A 334 GFSAPV--------REQIYKIAS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLE 404 (500)
T ss_dssp SCCTTH--------HHHHHHHHH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCCHHH--------HHHHHHHHh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6666 455555543 345678899998888887321 2 567888899999999999999998
Q ss_pred CCeeeCCCCceEEEEEcCC------------CC-hHHHHHHHHHhcCeEEeCCCCcCC-CCCCeEEEEeecCHHHHHHHH
Q 013521 369 GLKVNGGKNAPYVWVQFPG------------SS-SWDVFAEILEKTHILTIPGSGFGP-GGNEHIRVSAFGHREYISEAC 434 (441)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~~~~~~~~~~l 434 (441)
|+++.++.+++|+|+++.- .. +..++..+++++||.+.||+.|+. .+.++||+++..+++++++++
T Consensus 405 g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i 484 (500)
T 3tcm_A 405 GITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVI 484 (500)
T ss_dssp TEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHH
T ss_pred CcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHH
Confidence 9999888899999976531 11 233456788888999999999984 567899999988889999999
Q ss_pred HHHHhh
Q 013521 435 RRLKNF 440 (441)
Q Consensus 435 ~~l~~~ 440 (441)
++|+++
T Consensus 485 ~~l~~~ 490 (500)
T 3tcm_A 485 SRFTVF 490 (500)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=362.83 Aligned_cols=340 Identities=17% Similarity=0.179 Sum_probs=264.2
Q ss_pred CeEEeCCCCCC---CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH-
Q 013521 73 RLIRLGIGDTT---QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI- 148 (441)
Q Consensus 73 ~~i~l~~g~~~---~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al- 148 (441)
.+|+|+.|+|+ +++++.+.+++.+.+.. .......+|++..|..+||+++|+|+ ++++++|++|+|+++++
T Consensus 33 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~Y~~~~G~~~lr~~ia~~~----~~~~~~i~~t~G~~~al~ 107 (422)
T 3d6k_A 33 LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRT-KDGVDCRNYGGLLGIADIRELWAEAL----GLPADLVVAQDGSSLNIM 107 (422)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSTTCCBC-TTCCBTTSSCCSSCCHHHHHHHHHHH----TCCGGGEEECSSCHHHHH
T ss_pred CeEeCCCCCCChhhCCCcHHHHHHHHHHHhh-ccchhhhCCCCCCCCHHHHHHHHHHh----CCChhHEEEecchHHHHH
Confidence 47999999998 77777777776654210 01123568998899999999999998 78899999999999997
Q ss_pred -HHH-HHhcCC------------CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--
Q 013521 149 -SRL-QMLLGS------------NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST-- 211 (441)
Q Consensus 149 -~~l-~~l~~~------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~-- 211 (441)
.++ ..+..+ +|+|++++|+|+++...++..| .+++.++++++ +++++ +++
T Consensus 108 l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~l~~~l 174 (422)
T 3d6k_A 108 FDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFG------------FEMINVPMTDE-GPDMGVVRELV 174 (422)
T ss_dssp HHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHT------------CEEEEEEEETT-EECHHHHHHHH
T ss_pred HHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcC------------CEEEecCCCCC-CCCHHHHHHHH
Confidence 554 445554 3589999999999999999998 58889998764 33322 221
Q ss_pred C-CCccEEE-EcCCCCccccCCCHHHHHHHHHHHH-HcCcEEEEcccccc--cccCCC-CCccccc---CCCcceeEEEe
Q 013521 212 T-SRTDIIF-FCSPNNPTGHAATWQQLKKLVEFAK-ANGSIIVYDSAYAA--YITDPS-PRSIYEI---PGAREVAIEIS 282 (441)
Q Consensus 212 ~-~~~~~v~-i~~p~NPtG~~~~~~~~~~i~~~a~-~~~~~ii~De~~~~--~~~~~~-~~~~~~~---~~~~~~~i~i~ 282 (441)
. .++++|+ +++||||||.++|.+++++|+++|+ +||++||+||+|.+ |..++. ..++..+ .+..+++++++
T Consensus 175 ~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 254 (422)
T 3d6k_A 175 KDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMS 254 (422)
T ss_dssp TSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEE
T ss_pred hcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEc
Confidence 2 3788888 5799999999999999999999999 99999999999986 444332 2344332 23457899999
Q ss_pred cCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC-CcH-HHHHHHHHHHHHHHHH
Q 013521 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP-DGF-QALRTVIDYYKENAKI 360 (441)
Q Consensus 283 S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~-~~~~~~~~~~~~~~~~ 360 (441)
||||. ++||+|+||+++++++ ++.+.........+++.++|.++.+++++ ..+ ++++++++.++++++.
T Consensus 255 S~SK~-~~~GlriG~~~~~~~l--------~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (422)
T 3d6k_A 255 STSKI-THAGSGVSFFASSKEN--------IEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFER 325 (422)
T ss_dssp ESTTT-SCTTSSCEEEECCHHH--------HHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred Chhhh-cCcccceEEEEeCHHH--------HHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence 99999 5699999999999877 46666666666667899999999999986 323 6788999999999999
Q ss_pred HHHHHHh----CC-CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeC-CCCcC--C-CCCCeEEEEee-cCHHHH
Q 013521 361 IVDAFQS----LG-LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP-GSGFG--P-GGNEHIRVSAF-GHREYI 430 (441)
Q Consensus 361 l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~--~-~~~~~iRls~~-~~~~~~ 430 (441)
+.+.|.+ .| +.+..+.+|+|+|++++..+...+ ..+++++||.+.| |..|. . .+++++||+++ .+++++
T Consensus 326 l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~-~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i 404 (422)
T 3d6k_A 326 VLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRV-VELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAEL 404 (422)
T ss_dssp HHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTCHHHH-HHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHH
T ss_pred HHHHHHHhcCcCCceEEeCCCcceEEEEECCCCCHHHH-HHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHH
Confidence 8888875 33 566667789999999985444444 4556677999999 55564 2 24689999997 589999
Q ss_pred HHHHHHHHhh
Q 013521 431 SEACRRLKNF 440 (441)
Q Consensus 431 ~~~l~~l~~~ 440 (441)
++++++|+++
T Consensus 405 ~~~~~~l~~~ 414 (422)
T 3d6k_A 405 EVAMDGFATC 414 (422)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=348.42 Aligned_cols=327 Identities=17% Similarity=0.283 Sum_probs=269.5
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
.+++|+|+.|++++++|+.+.+++.+.+.. ..+|++..+ .++|+++|+++ ++++++|++|+|+++++.+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~~~y~~~~~-~~lr~~la~~~----~~~~~~v~~~~g~~~a~~~ 97 (365)
T 3get_A 29 VKEVIKLASNENPFGTPPKAIECLRQNANK------AHLYPDDSM-IELKSTLAQKY----KVQNENIIIGAGSDQVIEF 97 (365)
T ss_dssp CSCCEECSSCCCTTCSCHHHHHHHHHHGGG------TTSCCCTTC-HHHHHHHHHHH----TCCGGGEEEESSHHHHHHH
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHHHh------hccCCCCCh-HHHHHHHHHHh----CCCcceEEECCCHHHHHHH
Confidence 367999999999999999999999998752 346766655 89999999997 7889999999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPN 224 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~ 224 (441)
+..++++||+|+++.|+|+++...+...| .+++.++++. .++ .+++. .+++++|++++||
T Consensus 98 ~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~-~d~~~l~~~l~~~~~~v~~~~p~ 163 (365)
T 3get_A 98 AIHSKLNSKNAFLQAGVTFAMYEIYAKQCG------------AKCYKTQSIT-HNL-DEFKKLYETHKDEIKLIFLCLPN 163 (365)
T ss_dssp HHHHHCCTTCEEEECSSCCTHHHHHHHHHT------------CEEEECSSSS-CCH-HHHHHHHHHTTTTEEEEEEESSC
T ss_pred HHHHHhCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEEecCC-CCC-CCHHHHHHHhCCCCCEEEEcCCC
Confidence 57778999999999999999999999998 5888988822 233 44322 3689999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc--C-CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT--D-PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~--~-~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
||||.++|.+++++|+++| ++|+++|+||+|+++.+ . ..+.+.....+..+++++++||||.+|++|+|+||++++
T Consensus 164 nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 242 (365)
T 3get_A 164 NPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIAN 242 (365)
T ss_dssp TTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEEC
T ss_pred CCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcC
Confidence 9999999999999999998 57999999999998874 3 223334333223467899999999999999999999998
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEE
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 381 (441)
+++ .+.+...... .+++.+.|.++.+++++ .+++++.+++++++++.+.+.|+++|+.+.+ +.++|+
T Consensus 243 ~~~--------~~~~~~~~~~--~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~~~ 309 (365)
T 3get_A 243 ANI--------ISAFYKLRAP--FNVSNLALKAAVAAMDD--DEFTEKTLENNFSQMELYKEFAKKHNIKIID-SYTNFI 309 (365)
T ss_dssp HHH--------HHHHHHHSCT--TCSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECC-CSSSEE
T ss_pred HHH--------HHHHHHhcCC--CCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEECC-CCCeEE
Confidence 776 3555543332 45889999999999984 3678999999999999999999999988765 467889
Q ss_pred EEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 382 WVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 382 ~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|++++..+..++.+.|.+ +||.+.||..|+ ++++||++. ++++++++++.|++++
T Consensus 310 ~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~---~~~iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 310 TYFFDEKNSTDLSEKLLK-KGIIIRNLKSYG---LNAIRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp EEECSSSCHHHHHHHHHT-TTEECEECGGGT---CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHH-CCEEEEECccCC---CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 999985456677777665 599999999887 789999986 7899999999998763
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-45 Score=360.08 Aligned_cols=344 Identities=20% Similarity=0.332 Sum_probs=278.0
Q ss_pred CCCeEEeCCCCCCC--CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC---CCCCcEEEcCCcH
Q 013521 71 DARLIRLGIGDTTQ--PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG---IEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~~~--~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~---~~~~~I~~t~G~~ 145 (441)
++++|+|+.|.++. .+++.+.+++.+.+.... ....+|++..|..++|+++|+++.+.++ +++++|++|+|++
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~ 119 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEY--HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 119 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSH--HHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcc--hhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHH
Confidence 35789999997653 367889999999886521 1245788888999999999999965435 7789999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C--------C
Q 013521 146 SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T--------S 213 (441)
Q Consensus 146 ~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~--------~ 213 (441)
+++.+ +..++++||+|+++.|+|+++...+...| .+++.++.+++ +++++ +++ . .
T Consensus 120 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~ 186 (425)
T 1vp4_A 120 QALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYL------------ANFVVVPLEDD-GMDLNVLERKLSEFDKNGKIK 186 (425)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTT------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC------------CEEEEeccCCC-CCCHHHHHHHHHhhhhcccCC
Confidence 99987 67778999999999999999999988888 58888888654 33222 211 1 2
Q ss_pred CccEEE-EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCc
Q 013521 214 RTDIIF-FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 214 ~~~~v~-i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
++++|+ +++||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..++ ..+++++++||||.+| +
T Consensus 187 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~i~~~s~sK~~~-~ 264 (425)
T 1vp4_A 187 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-GPERVVLLNTFSKVLA-P 264 (425)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-CTTTEEEEEESTTTTC-G
T ss_pred CceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhC-CCCCEEEEeccccccc-c
Confidence 688885 679999999999999999999999999999999999999887653 34565553 2457899999999999 9
Q ss_pred cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhC--
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSL-- 368 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-- 368 (441)
|+|+||+++++++ .+.+.........+++.+.|.++.+++++..+ ++++++++.++++++.+.+.|++.
T Consensus 265 G~r~G~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 336 (425)
T 1vp4_A 265 GLRIGMVAGSKEF--------IRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFS 336 (425)
T ss_dssp GGCEEEEECCHHH--------HHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ccceEEEeeCHHH--------HHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999876 45555554444455789999999999975433 678899999999999999999875
Q ss_pred ---CCeeeCCCCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCC--CCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 369 ---GLKVNGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPG--GNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 369 ---g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
|+.+..+.+|+|+|++++ +.+..++.+.++++ ||.+.||+.|+.. +++++||++.. +++++++++++|+++
T Consensus 337 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~ 414 (425)
T 1vp4_A 337 DIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREV 414 (425)
T ss_dssp TSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 688776778999999997 34556788888877 9999999988643 46899999866 789999999999875
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=344.24 Aligned_cols=327 Identities=19% Similarity=0.319 Sum_probs=269.1
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
+.+++|+|+.|++++++|+.+.+++.+.+. ....| +..+..++|+++|+++ ++++++|++|+|+++++.
T Consensus 30 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------~~~~y-~~~~~~~lr~~la~~~----~~~~~~v~~~~g~t~a~~ 98 (363)
T 3ffh_A 30 GLTKITKLSSNENPLGTSKKVAAIQANSSV------ETEIY-PDGWASSLRKEVADFY----QLEEEELIFTAGVDELIE 98 (363)
T ss_dssp TCSCCEECSSCSCTTCCCHHHHHHHHTCBS------CCCBC-----CHHHHHHHHHHH----TCCGGGEEEESSHHHHHH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHH------HhhcC-CCcchHHHHHHHHHHh----CCChhhEEEeCCHHHHHH
Confidence 346799999999999999999998887542 34456 5568999999999997 788899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSP 223 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p 223 (441)
+ +..++++||+|+++.|+|+++...++..| .+++.++.+++.. .+++. .+++++|++++|
T Consensus 99 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~--~d~~~l~~~i~~~~~~v~~~~p 164 (363)
T 3ffh_A 99 LLTRVLLDTTTNTVMATPTFVQYRQNALIEG------------AEVREIPLLQDGE--HDLEGMLNAIDEKTTIVWICNP 164 (363)
T ss_dssp HHHHHHCSTTCEEEEEESSCHHHHHHHHHHT------------CEEEEEECCTTSC--CCHHHHHHHCCTTEEEEEEESS
T ss_pred HHHHHHccCCCEEEEcCCChHHHHHHHHHcC------------CEEEEecCCCCCC--cCHHHHHHhcccCCCEEEEeCC
Confidence 8 56778999999999999999999999998 5899999875433 33321 368999999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
|||||.++|.+++++|++.|++ |+++|+||+|+++.+ +...+.....+.++++++++||||.+|++|+|+||++++++
T Consensus 165 ~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 242 (363)
T 3ffh_A 165 NNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKE 242 (363)
T ss_dssp CTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHH
T ss_pred CCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHH
Confidence 9999999999999999988877 999999999998877 43334444433467899999999999999999999999877
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-CCCeeeCCCCceEEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-LGLKVNGGKNAPYVW 382 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~ 382 (441)
+ .+.+..... ..+.+.+.|.++.+++++ .+++++.+++++++++.+.+.|++ .|+.+.+ +.++|+|
T Consensus 243 ~--------~~~l~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~~~~~ 309 (363)
T 3ffh_A 243 I--------IRQLNIVRP--PFNTTSIGQKLAIEAIKD--QAFIGECRTSNANGIKQYEAFAKRFEKVKLYP-ANGNFVL 309 (363)
T ss_dssp H--------HHHHHHTCC--SCCCBHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECC-CCSSEEE
T ss_pred H--------HHHHHHhCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhhCCCceECC-CCCeEEE
Confidence 7 355554333 345889999999999974 367899999999999999999999 5888875 5788999
Q ss_pred EEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 383 VQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 383 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++++. +..++.+.+.+ +||.+.||+.|+. ++++||++. +++++++++++|++++
T Consensus 310 ~~~~~-~~~~~~~~l~~-~gi~v~~g~~~~~--~~~iRis~~-~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 310 IDLGI-EAGTIFSYLEK-NGYITRSGAALGF--PTAVRITIG-KEEDNSAVIALLEKLL 363 (363)
T ss_dssp EECSS-CHHHHHHHHHH-TTEECEETTTTTC--TTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred EECCC-CHHHHHHHHHH-CCeEEEeCccCCC--CCeEEEECC-CHHHHHHHHHHHHHhC
Confidence 99975 56677777765 5999999998865 689999986 8899999999999875
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=356.00 Aligned_cols=347 Identities=21% Similarity=0.316 Sum_probs=271.4
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhc------cCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC----CCCCcEEEc
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFAL------STVKGYKGYGAEQGNMALRTAIADKFYKDMG----IEGDEIFIS 141 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~------~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~----~~~~~I~~t 141 (441)
.++++|+.+.+++++ +.+.+++.+..... .......+|+++.|..++|+++|+++.+.++ +++++|++|
T Consensus 36 ~~~i~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~ 114 (428)
T 1iay_A 36 NGVIQMGLAENQLCL-DLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMA 114 (428)
T ss_dssp TSBEECSSCCCCSSH-HHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEE
T ss_pred CceeeeccccchhhH-HHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEc
Confidence 368999998887654 47777777532100 0001235788777899999999999975333 678999999
Q ss_pred CCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH-HhccccccccccCccceeEEeecCCCCCccCCCCC--------
Q 013521 142 DGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV-IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-------- 211 (441)
Q Consensus 142 ~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-------- 211 (441)
+|+++++.+ +..++++||.|+++.|+|+++...+. ..| .+++.++.+.++++..+++.
T Consensus 115 ~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 182 (428)
T 1iay_A 115 GGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTG------------VQLIPIHCESSNNFKITSKAVKEAYENA 182 (428)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTC------------CEEEEECCCTTTTTCCCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcC------------CEEEEeecCCccCCcCCHHHHHHHHHHH
Confidence 999999987 67778999999999999999876443 456 58888888654454444322
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCC-------cceeEE
Q 013521 212 ---TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGA-------REVAIE 280 (441)
Q Consensus 212 ---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~-------~~~~i~ 280 (441)
.+++++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++. ..++..+... .+++++
T Consensus 183 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv 262 (428)
T 1iay_A 183 QKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHI 262 (428)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEE
T ss_pred HhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEE
Confidence 13789999999999999999999999999999999999999999999777543 3345554322 578899
Q ss_pred EecCCcccCCccceeEEEEee-ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHHHH
Q 013521 281 ISSFSKFAGFTGVRLGWTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYKEN 357 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~ 357 (441)
+.||||.+|++|+|+||++++ +++ ++.+..... ..+++.++|.++.+++++..+ ++++++++.++++
T Consensus 263 ~~s~sK~~g~~Glr~G~~~~~~~~~--------~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 263 VYSLSKDMGLPGFRVGIIYSFNDDV--------VNCARKMSS--FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp EEESTTTSSCGGGCEEEEEESCHHH--------HHHHHHHHT--TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred EecchhhcCCCCceEEEEEeCCHHH--------HHHHHHHHh--cccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999995 444 344544322 345789999999999986542 4778899999999
Q ss_pred HHHHHHHHHhCCCeeeCCCCceEEEEEcCCC-------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-cCHHH
Q 013521 358 AKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF-GHREY 429 (441)
Q Consensus 358 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~~ 429 (441)
++.+.+.|+++|+++.++.+|+|+|++++.. ...++.+.+++++||.+.||+.|+..+++++||++. .++++
T Consensus 333 ~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~ 412 (428)
T 1iay_A 333 HKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGT 412 (428)
T ss_dssp HHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHH
T ss_pred HHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHH
Confidence 9999999998888887766899999999732 234667777776799999999887655789999996 68999
Q ss_pred HHHHHHHHHhhC
Q 013521 430 ISEACRRLKNFL 441 (441)
Q Consensus 430 ~~~~l~~l~~~l 441 (441)
+++++++|++++
T Consensus 413 i~~~~~~l~~~l 424 (428)
T 1iay_A 413 VDIALARIRRFV 424 (428)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=349.68 Aligned_cols=352 Identities=19% Similarity=0.265 Sum_probs=258.4
Q ss_pred CCCeEEeCCCCCCCCCc--HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHH
Q 013521 71 DARLIRLGIGDTTQPIP--DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~--~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~ 146 (441)
++++++|+.|.|+..++ +.+.+++.+.+.+........+|++..|..++|+++|+|+.+ ++++++++|++|+|+++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~ 109 (417)
T 3g7q_A 30 TPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQS 109 (417)
T ss_dssp --CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHH
Confidence 35799999999876322 455666666554311001234798889999999999999965 56788999999999999
Q ss_pred HHHH-HHHhcCCCC-----EEEEe-CCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC---CCCCCCcc
Q 013521 147 DISR-LQMLLGSNV-----TVAVQ-DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD---LSTTSRTD 216 (441)
Q Consensus 147 al~~-l~~l~~~gd-----~Vlv~-~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~---~~~~~~~~ 216 (441)
++++ +..++++|| .|+++ +|+|+++...+...+.... .. ..+..++.+. .++..| ++..++++
T Consensus 110 al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~-~~~~~d~~~l~~~~~~~ 182 (417)
T 3g7q_A 110 AFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS---AR---PNIELLPEGQ-FKYHVDFEHLHIGEETG 182 (417)
T ss_dssp HHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEE---CC---CEEEEEGGGE-EEEECCGGGCCCCTTEE
T ss_pred HHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhcc---cc---CcccccCCcc-cccccCHHHhccccCce
Confidence 9998 567788887 89996 9999999876644332100 00 2344443321 012222 22236789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
++++++||||||.++|.+++++|+++|++||+++|+||+|+.+.......... .+..+++++++|||| ++++|+|+|
T Consensus 183 ~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK-~~~~G~r~G 259 (417)
T 3g7q_A 183 MICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR--PLWNPNIILCMSLSK-LGLPGSRCG 259 (417)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC--CCCCTTEEEEEESGG-GTCTTSCCE
T ss_pred EEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc--cCCCCCEEEEEechh-ccCCCcceE
Confidence 99999999999999999999999999999999999999998643221111111 123577899999999 578999999
Q ss_pred EEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHH-HHHHHHHHHHHHHHHHHhC----CC
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRT-VIDYYKENAKIIVDAFQSL----GL 370 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~~----g~ 370 (441)
|+++++++ .+.+.........+++.+.|.++.+++.+..+ .+..+ +++.++++++.+.+.|.+. ++
T Consensus 260 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 331 (417)
T 3g7q_A 260 IIIANDKT--------ITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERC 331 (417)
T ss_dssp EEECCHHH--------HHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTC
T ss_pred EEEeCHHH--------HHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 99998887 46676666666666888999999999986655 44555 7888999999999988763 57
Q ss_pred eeeCCCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCC-------CCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 371 KVNGGKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGG-------NEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 371 ~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~-------~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.+..+.+|+|+|++++. .+..++...+ .++||.+.||+.|.... +++|||+++.+++++++++++|++++
T Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l 410 (417)
T 3g7q_A 332 LIHKPEGAIFLWLWFKDLPITTELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEI 410 (417)
T ss_dssp EEECCCBSSEEEEECTTCSSCHHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHHHH
T ss_pred eeeCCCcceEEEEEcCCCCCCHHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 88777889999999984 4666777776 45699999999986543 57999999779999999999998763
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-44 Score=344.34 Aligned_cols=328 Identities=17% Similarity=0.266 Sum_probs=270.0
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
.++++|+|+.|++++++|+.+.+++.+.+.. ..+| +..+..++|+++|+++ ++++++|++|+|+++++.
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~~~y-~~~~~~~l~~~la~~~----~~~~~~i~~~~g~~~a~~ 82 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARDAVVK------ANRY-AKNEILMLGNKLAAHH----QVEAPSILLTAGSSEGIR 82 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHHTGGG------TTSC-CHHHHHHHHHHHHHHT----TSCGGGEEEESHHHHHHH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHhh------CcCC-CCCchHHHHHHHHHHh----CCChHHEEEeCChHHHHH
Confidence 3467999999999999999999999987753 3467 5568899999999996 788999999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C--CCccEEEEcCC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T--SRTDIIFFCSP 223 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~--~~~~~v~i~~p 223 (441)
+ +..++++||+|+++.|+|+++...++..| .+++.++.+++..++++ +++ . +++++|++++|
T Consensus 83 ~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p 150 (354)
T 3ly1_A 83 AAIEAYASLEAQLVIPELTYGDGEHFAKIAG------------MKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNP 150 (354)
T ss_dssp HHHHHHCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESS
T ss_pred HHHHHHhCCCCeEEECCCCchHHHHHHHHcC------------CEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCC
Confidence 8 56778999999999999999999999888 58999998754333222 111 2 68999999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc-CCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI-PGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~-~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|||||.++|.+++++|+++| +||+++|+||+|.++.+++.+.+.... +...+++++++||||.+|++|+|+||+++++
T Consensus 151 ~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 229 (354)
T 3ly1_A 151 NNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHP 229 (354)
T ss_dssp CTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCH
T ss_pred CCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCH
Confidence 99999999999999999999 899999999999998876644344433 3222778999999999999999999999988
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVW 382 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 382 (441)
++ .+.+...... .+++.+.|.++.+++++. .++++++++++++++.+.+.|+++|+.+.+ +.|+|+|
T Consensus 230 ~~--------~~~~~~~~~~--~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~ 296 (354)
T 3ly1_A 230 TV--------IALMGRYVAG--EKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLPYLP-SEGNFVF 296 (354)
T ss_dssp HH--------HHHHGGGTTC--SCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CCSSEEE
T ss_pred HH--------HHHHHHhcCC--CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCeECC-CCceEEE
Confidence 76 3555544333 568899999999999843 678999999999999999999988888775 5788999
Q ss_pred EEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 383 VQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 383 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
++++. +..++...|.+ +||.+. |..++ .++++||++. +++++++++++|+++
T Consensus 297 ~~~~~-~~~~~~~~l~~-~gi~v~-g~~~~--~~~~iRis~~-~~~~i~~~~~~l~~~ 348 (354)
T 3ly1_A 297 HQLVV-PLKDYQTHMAD-AGVLIG-RAFPP--ADNWCRISLG-TPQEMQWVADTMREF 348 (354)
T ss_dssp EECSS-CHHHHHHHHHH-TTEECC-CCCTT--CTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred EECCC-CHHHHHHHHHH-CCEEEe-ecCCC--CCCEEEEEcC-CHHHHHHHHHHHHHH
Confidence 99986 56677777665 599999 76543 5789999975 788999999999875
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-44 Score=350.54 Aligned_cols=339 Identities=22% Similarity=0.319 Sum_probs=274.8
Q ss_pred CCeEEeCCCCCCC--CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 72 ARLIRLGIGDTTQ--PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 72 ~~~i~l~~g~~~~--~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
+++|+|+.|.++. .+++.+.+++.+.+.... ....+|++..|..++|+++|+++ ++++++|++|+|+++++.
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~~~al~ 105 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREKG--EVALQYSPTEGYAPLRAFVAEWI----GVRPEEVLITTGSQQALD 105 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHH--HHHTSCCCTTCCHHHHHHHHHHH----TSCGGGEEEESHHHHHHH
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhcc--hhhhCCCCCCCCHHHHHHHHHHh----CCChhhEEEeccHHHHHH
Confidence 4689999887653 367889999998886521 12457877789999999999998 678899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC---CCCccEEE-EcCC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST---TSRTDIIF-FCSP 223 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~---~~~~~~v~-i~~p 223 (441)
+ +..++++||+|+++.|+|+++...++..| .+++.++.+++ +++++ +++ ..++++|+ +++|
T Consensus 106 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~d~~~l~~~l~~~~~~~v~~~~~~ 172 (397)
T 2zyj_A 106 LVGKVFLDEGSPVLLEAPSYMGAIQAFRLQG------------PRFLTVPAGEE-GPDLDALEEVLKRERPRFLYLIPSF 172 (397)
T ss_dssp HHHHHHCCTTCEEEEEESCCHHHHHHHHTTC------------CEEEEEEEETT-EECHHHHHHHHHHCCCSCEEECCBS
T ss_pred HHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC------------CEEEecCcCCC-CCCHHHHHHHHhhcCCeEEEECCCC
Confidence 7 56778999999999999999999988888 58888888653 32221 221 13788875 5799
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCc---ceeEEEecCCcccCCccceeEEEE
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAR---EVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~---~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
|||||.++|.+++++|+++|++||+++|+||+|+++.+++. +.++..++ .. +++++++|+||.+| +|+|+||++
T Consensus 173 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~-~G~r~G~~~ 250 (397)
T 2zyj_A 173 QNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELA-REAGYPGVIYLGSFSKVLS-PGLRVAFAV 250 (397)
T ss_dssp CTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHH-HHHTCCCEEEEEESTTTTC-GGGCCEEEE
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhC-cccCCCeEEEEeccccccc-ccceeEEEe
Confidence 99999999999999999999999999999999999887643 45565553 22 57899999999999 999999999
Q ss_pred eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC---CCeeeCCC
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL---GLKVNGGK 376 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~ 376 (441)
+++++ .+.+.........+++.+.|.++.+++++..+++++++++.++++++.+.+.|++. |+.+..+.
T Consensus 251 ~~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~ 322 (397)
T 2zyj_A 251 AHPEA--------LQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPK 322 (397)
T ss_dssp CCHHH--------HHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCS
T ss_pred cCHHH--------HHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCC
Confidence 99776 45565544444445689999999999986433678899999999999999999885 78887677
Q ss_pred CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCC--CCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 377 NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPG--GNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 377 ~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
+|+|+|++++ +.+..++.+.++++ ||.+.||..|+.. +++++||++.. +++++++++++|+++
T Consensus 323 ~g~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~ 389 (397)
T 2zyj_A 323 GGMFVWMELPKGLSAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRA 389 (397)
T ss_dssp BSSEEEEECSTTCCHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 8999999997 44567788887776 9999999988643 46899999865 689999999999875
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-44 Score=353.85 Aligned_cols=348 Identities=20% Similarity=0.293 Sum_probs=276.2
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCC-------CCCCCCCCCcCcHHHHHHHHHHHhh--h--CCCCCCcEEE
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTV-------KGYKGYGAEQGNMALRTAIADKFYK--D--MGIEGDEIFI 140 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~-------~~~~~Y~~~~g~~~lr~~ia~~l~~--~--~~~~~~~I~~ 140 (441)
..+|+|+.+.+++. .+.+.+++.+........ ....+|++..|..+||+++|+++.+ + ..+++++|++
T Consensus 38 ~~~i~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~ 116 (435)
T 3piu_A 38 NGIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVL 116 (435)
T ss_dssp TSBEECSSCCCCSS-HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEE
T ss_pred CCeEEecccccccc-HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEE
Confidence 35899999887664 566666666543321100 0124698889999999999999974 2 3467999999
Q ss_pred cCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH-HhccccccccccCccceeEEeecCCCCCccCCCCC-------
Q 013521 141 SDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV-IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------- 211 (441)
Q Consensus 141 t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------- 211 (441)
|+|+++++.+ +..++++||.|+++.|+|+++...+. ..| .+++.++.++++++..|++.
T Consensus 117 ~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~ 184 (435)
T 3piu_A 117 TAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTG------------VEIVPIHCTSSNGFQITETALEEAYQE 184 (435)
T ss_dssp EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTC------------CEEEEEECCGGGTSCCCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcC------------CEEEEeeCCCccCCcCCHHHHHHHHHH
Confidence 9999999998 67778999999999999999988776 567 58899998876555555432
Q ss_pred ----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCC---------cce
Q 013521 212 ----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGA---------REV 277 (441)
Q Consensus 212 ----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~---------~~~ 277 (441)
..++++|++++||||||.++|.+++++|+++|++||+++|+||+|..+.+.+. +.++..+... +++
T Consensus 185 ~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 264 (435)
T 3piu_A 185 AEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQR 264 (435)
T ss_dssp HHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGG
T ss_pred HHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCC
Confidence 13789999999999999999999999999999999999999999998777653 3344443222 578
Q ss_pred eEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHH
Q 013521 278 AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYK 355 (441)
Q Consensus 278 ~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~ 355 (441)
+++++||||.+|++|+|+||++++++.+ .+.+.... .....+.+.|.++.+++.+..+ +++++++++++
T Consensus 265 ~i~i~s~sK~~g~~G~r~G~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 335 (435)
T 3piu_A 265 VHVVYSLSKDLGLPGFRVGAIYSNDDMV-------VAAATKMS--SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLK 335 (435)
T ss_dssp EEEEEESSSSSCCGGGCEEEEEESCHHH-------HHHHHHHG--GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeecccCCCceeEEEEEeCCHHH-------HHHHHHHh--hcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 8999999999999999999999966543 34444332 2345788899988888875443 36788899999
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCC-------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CH
Q 013521 356 ENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HR 427 (441)
Q Consensus 356 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~ 427 (441)
++++.+.+.|++.|+++.++.+|+|+|++++.. ...++..++++++||.+.||+.|++.+++++||+++. ++
T Consensus 336 ~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 415 (435)
T 3piu_A 336 QRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPE 415 (435)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCH
T ss_pred HHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCH
Confidence 999999999999899988877889999999732 2456778888877999999999988788999999976 89
Q ss_pred HHHHHHHHHHHhhC
Q 013521 428 EYISEACRRLKNFL 441 (441)
Q Consensus 428 ~~~~~~l~~l~~~l 441 (441)
+++++++++|++++
T Consensus 416 e~i~~~l~~l~~~l 429 (435)
T 3piu_A 416 RTLDLAMQRLKAFV 429 (435)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=358.00 Aligned_cols=340 Identities=15% Similarity=0.157 Sum_probs=268.4
Q ss_pred CCeEEeCCCCCCCC---CcHHHHHHH--HHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 72 ARLIRLGIGDTTQP---IPDIITSAM--AEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 72 ~~~i~l~~g~~~~~---~~~~~~~al--~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
..+|+|+.|.|+.. .++.+.+++ .+.+... .....+|++..|..+||++||+|+ ++++++|++|+|+++
T Consensus 33 ~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~~----~~~~~~i~~t~G~~~ 106 (427)
T 3ppl_A 33 NLKLDLTRGKPSSEQLDFADELLALPGKGDFKAAD--GTDVRNYGGLDGIVDIRQIWADLL----GVPVEQVLAGDASSL 106 (427)
T ss_dssp CCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTT--SCBTTSSCCSSCCHHHHHHHHHHH----TSCGGGEEECSSCHH
T ss_pred CceEecCCCCCChHHCCCcHHHHHHhhhHHHhhcc--chhhcCCCCCCCcHHHHHHHHHHh----CCCcceEEEeCCcHH
Confidence 35799999988643 222344454 3333321 134678988899999999999998 789999999999999
Q ss_pred HH--HH-HHHhcC--C----------CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CC
Q 013521 147 DI--SR-LQMLLG--S----------NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LS 210 (441)
Q Consensus 147 al--~~-l~~l~~--~----------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~ 210 (441)
++ ++ +..+++ | ||+|++++|+|+++...++..| .+++.++++.+ +++++ ++
T Consensus 107 al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~l~ 173 (427)
T 3ppl_A 107 NIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFG------------FEMISVPMNED-GPDMDAVE 173 (427)
T ss_dssp HHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT------------CEEEEEEEETT-EECHHHHH
T ss_pred HHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcC------------CEEEEeCCCCC-CCCHHHHH
Confidence 99 45 556666 6 8999999999999999999999 58999998764 33322 22
Q ss_pred C---CCCccEEEEc-CCCCccccCCCHHHHHHHHHHH-HHcCcEEEEcccccccccCCC---CCccccc---CCCcceeE
Q 013521 211 T---TSRTDIIFFC-SPNNPTGHAATWQQLKKLVEFA-KANGSIIVYDSAYAAYITDPS---PRSIYEI---PGAREVAI 279 (441)
Q Consensus 211 ~---~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a-~~~~~~ii~De~~~~~~~~~~---~~~~~~~---~~~~~~~i 279 (441)
+ .+++++|+++ +||||||.++|.+++++|+++| ++||++||+||+|.++.+.+. +.++..+ .+..++++
T Consensus 174 ~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (427)
T 3ppl_A 174 ELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFW 253 (427)
T ss_dssp HHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEE
T ss_pred HHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEE
Confidence 1 3678888866 7899999999999999999999 999999999999999776543 2244443 23467899
Q ss_pred EEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC-CcH-HHHHHHHHHHHHH
Q 013521 280 EISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP-DGF-QALRTVIDYYKEN 357 (441)
Q Consensus 280 ~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~-~~~~~~~~~~~~~ 357 (441)
+++||||+ ++||+|+||+++++++ .+.+.........+++.+.|.++.+++.+ ..+ .++++.++.++++
T Consensus 254 ~~~S~SK~-~~~G~r~G~~~~~~~l--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (427)
T 3ppl_A 254 AFTSTSKI-TLAGAGVSFFLTSAEN--------RKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPK 324 (427)
T ss_dssp EEEESTTT-SCTTSSCEEEECCHHH--------HHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred EEechhhc-cCcCccEEEEEcCHHH--------HHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHH
Confidence 99999999 5699999999999887 46676666666677899999999999986 333 6788999999999
Q ss_pred HHHHHHHHHhC-----CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeC-CCCcCC---CCCCeEEEEeec-CH
Q 013521 358 AKIIVDAFQSL-----GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP-GSGFGP---GGNEHIRVSAFG-HR 427 (441)
Q Consensus 358 ~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~---~~~~~iRls~~~-~~ 427 (441)
++.+.+.|.+. ++.+..+.+|+|+|++++..+..++... ++++||.+.| |..|.. ..++++||+++. ++
T Consensus 325 ~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~-l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~ 403 (427)
T 3ppl_A 325 FNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAEL-AKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPV 403 (427)
T ss_dssp HHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHH-HHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCH
T ss_pred HHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHH-HHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCH
Confidence 99998888652 4777777899999999986555666555 5566999999 555642 357899999966 78
Q ss_pred HHHHHHHHHHHhh
Q 013521 428 EYISEACRRLKNF 440 (441)
Q Consensus 428 ~~~~~~l~~l~~~ 440 (441)
+++++++++|+++
T Consensus 404 ~~i~~~~~~l~~~ 416 (427)
T 3ppl_A 404 EELEVAMDGVATC 416 (427)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=337.06 Aligned_cols=328 Identities=18% Similarity=0.244 Sum_probs=264.8
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
++++|+|+.|.+++++++.+.+++.+.+.. ..+|++ .|..++|+++|+++ ++++++|++|+|+++++.+
T Consensus 23 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~------~~~y~~-~~~~~l~~~la~~~----~~~~~~v~~~~g~~~al~~ 91 (364)
T 1lc5_A 23 PDQLLDFSANINPLGMPVSVKRALIDNLDC------IERYPD-ADYFHLHQALARHH----QVPASWILAGNGETESIFT 91 (364)
T ss_dssp GGGSEECSSCCCTTCCCHHHHHHHHHTGGG------GGSCCC-TTCHHHHHHHHHHH----TSCGGGEEEESSHHHHHHH
T ss_pred ccceEEeccccCCCCCCHHHHHHHHHHHHH------hhcCCC-CCHHHHHHHHHHHH----CcCHHHEEECCCHHHHHHH
Confidence 346899999998888889999999887653 346754 58999999999997 7888999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCC
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNN 225 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~N 225 (441)
+...+ +||+|+++.|+|+++...+...| .+++.++.+.++++.. ++. .++++++++++|||
T Consensus 92 ~~~~~-~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~n 157 (364)
T 1lc5_A 92 VASGL-KPRRAMIVTPGFAEYGRALAQSG------------CEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNN 157 (364)
T ss_dssp HHHHH-CCSEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCT
T ss_pred HHHHc-CCCeEEEeCCCcHHHHHHHHHcC------------CeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCC
Confidence 54444 78999999999999999998888 5888888875334543 231 26789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE-eeccc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV-VPEEL 304 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~-~~~~~ 304 (441)
|||.++|.+++++|+++|++||+++|+||+|.++.+++ .+.....+..++++++.|+||.+|++|+|+||++ +++++
T Consensus 158 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 235 (364)
T 1lc5_A 158 PTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE--TGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAA 235 (364)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTC--CCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHH
T ss_pred CCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCc--cchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHH
Confidence 99999999999999999999999999999999887652 2222322234678999999999999999999999 88776
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWV 383 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 383 (441)
.+.+..... ..+++.+.|.++.+++++ ..++++.++.++++++.+.+.|+++ |+.+.+ +.|+|+|+
T Consensus 236 --------~~~l~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~ 302 (364)
T 1lc5_A 236 --------MARMRRQQM--PWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYP-GRANYLLL 302 (364)
T ss_dssp --------HHHHHHHSC--TTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECC-CSSSEEEE
T ss_pred --------HHHHHHhCC--CCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECC-CCCeEEEE
Confidence 345544332 345789999999999975 3678999999999999999999988 888765 57889999
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+++. ...++.+.+++ +||.+.||+.|+..+++++||++. ++++++++++.|++++
T Consensus 303 ~~~~-~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 357 (364)
T 1lc5_A 303 RCER-EDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 357 (364)
T ss_dssp EESC-TTCCHHHHHHT-TTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred ECCC-cHHHHHHHHHH-CCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence 9874 23467777665 599999999987656789999975 5777788888777653
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=350.90 Aligned_cols=336 Identities=17% Similarity=0.214 Sum_probs=264.0
Q ss_pred CCCCeEEeCCCCC-----CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCC
Q 013521 70 PDARLIRLGIGDT-----TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDG 143 (441)
Q Consensus 70 ~~~~~i~l~~g~~-----~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G 143 (441)
++.++|+|+.|.| ++++++.+.+++.+... ....+|++..|..++|+++++++.+..+. .+++|++|+|
T Consensus 36 g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g 110 (418)
T 3rq1_A 36 GRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSD-----SEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAG 110 (418)
T ss_dssp CGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCH-----HHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESH
T ss_pred cCCCeEECCCCcccCCCCCccccHHHHHHHHHhcc-----cccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCc
Confidence 3457999999976 67788888888766332 23457988889999999999998653321 1239999999
Q ss_pred cHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C----C
Q 013521 144 AQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T----S 213 (441)
Q Consensus 144 ~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~----~ 213 (441)
+++++.+ +..++++||+|++++|+|+++...+...| .+++.+++++++ +..+++. . +
T Consensus 111 ~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~ 177 (418)
T 3rq1_A 111 GTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTG------------RTLVTYSLFDEH-NNFNHEAFQNRVNELAAK 177 (418)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECSBCTT-SSBCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcC------------CEEEEEeeeCCC-CCcCHHHHHHHHHHhhcc
Confidence 9999998 67788999999999999999999999998 589999986543 3334322 1 1
Q ss_pred Ccc-EEEEcCC-CCccccCCCHHHHHHHHHHHH------HcCcEEEEcccccccccCCC-CCcccc-cCCCcce--eEEE
Q 013521 214 RTD-IIFFCSP-NNPTGHAATWQQLKKLVEFAK------ANGSIIVYDSAYAAYITDPS-PRSIYE-IPGAREV--AIEI 281 (441)
Q Consensus 214 ~~~-~v~i~~p-~NPtG~~~~~~~~~~i~~~a~------~~~~~ii~De~~~~~~~~~~-~~~~~~-~~~~~~~--~i~i 281 (441)
+++ ++++++| |||||.++|.+++++|+++|+ +||++||+||+|.+|.+++. +.++.. .++.+++ ++++
T Consensus 178 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 257 (418)
T 3rq1_A 178 QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVC 257 (418)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEE
Confidence 555 7888899 999999999999999999999 89999999999998887643 223322 3333344 5899
Q ss_pred ecCCcccCCccceeEEEEe---eccccccCCchhHHHHHHHHh----hhcCCCcHHHHHHHHHhcCCCc----H-HHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVV---PEELRYSNGYPVIKDFNRIVC----TCFNGASNIVQAGGLACLSPDG----F-QALRT 349 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~ 349 (441)
+||||.+|++|+|+||+++ ++++ ++.+..... ..+..++.++|.++.+++++.. + +++++
T Consensus 258 ~S~sK~~~~~G~r~G~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 329 (418)
T 3rq1_A 258 YSLSKGFTMYGQRVGAMIGISDDEEI--------ADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNC 329 (418)
T ss_dssp EESTTTTTCCSSCCEEEEEEESSHHH--------HHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred EeCCCCCcCcCCcceEEEEEeCCHHH--------HHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999998 6666 344544332 2334578899999999998643 2 34567
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHH
Q 013521 350 VIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HRE 428 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~ 428 (441)
+++.++++++.+.+.|+++|+++.++.+++|+|++++ +..++.+. ++++||.+.|| .+++||+++. +++
T Consensus 330 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~-l~~~gi~v~~g-------~~~iRis~~~~~~~ 399 (418)
T 3rq1_A 330 YYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTD--SANAICEE-LKKEHIYVIAL-------ANGIRIAACGIPKC 399 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCSSSEEEEECT--THHHHHHH-HHHTTEECEEC-------SSEEEEEGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEcCCC--CHHHHHHH-HHhCCEEEecC-------CCCeEEEEecCCHH
Confidence 7889999999999999988998888888999999885 55677665 55679999997 3589999874 899
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
++++++++|++++
T Consensus 400 ~i~~~~~~l~~~l 412 (418)
T 3rq1_A 400 QMTGLAEKIYNAM 412 (418)
T ss_dssp HHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=334.95 Aligned_cols=326 Identities=17% Similarity=0.289 Sum_probs=263.7
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
++++|+|+.|++++++|+.+.+++.+.+.... ....+|++ .+..++|+++|+++ ++++++|++|+|+++++.+
T Consensus 25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~-~~~~~lr~~la~~~----g~~~~~i~~t~g~~~al~~ 97 (360)
T 3hdo_A 25 IASWIKLNTNENPYPPSPEVVKAILEELGPDG--AALRIYPS-ASSQKLREVAGELY----GFDPSWIIMANGSDEVLNN 97 (360)
T ss_dssp CTTSEECSSCCCSSCCCHHHHHHHHHHHTTTC--GGGGSCCC-SSCHHHHHHHHHHH----TCCGGGEEEESSHHHHHHH
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHHhccc--chhhcCCC-CchHHHHHHHHHHh----CcCcceEEEcCCHHHHHHH
Confidence 35799999999999999999999999886421 12557754 47799999999997 7889999999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCcccc
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~ 229 (441)
+..++++||+|+++.|+|+++...+...| .+++.++.+++..+ .++.+..+++++++++|+||||.
T Consensus 98 ~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~-~~l~~~~~~~~v~i~~p~nptG~ 164 (360)
T 3hdo_A 98 LIRAFAAEGEEIGYVHPSYSYYGTLAEVQG------------ARVRTFGLTGDFRI-AGFPERYEGKVFFLTTPNAPLGP 164 (360)
T ss_dssp HHHHHCCTTCEEEEESSSCTHHHHHHHHHT------------CEEEEECBCTTSSB-TTCCSSBCSSEEEEESSCTTTCC
T ss_pred HHHHHhCCCCEEEEcCCChHHHHHHHHHCC------------CEEEEeeCCCCCCH-HHHHhhcCCCEEEEeCCCCCCCC
Confidence 67778999999999999999999999998 58899998765444 34444346789999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~ 309 (441)
++|.+ +|.++|+++|+++|+||+|++|... .+.++.. ..+++++++||||.+|++|+|+||+++++++
T Consensus 165 ~~~~~---~l~~l~~~~~~~li~De~~~~~~~~-~~~~~~~---~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~----- 232 (360)
T 3hdo_A 165 SFPLE---YIDELARRCAGMLVLDETYAEFAES-NALELVR---RHENVVVTRTLSKSYSLAGMRIGLAIARPEV----- 232 (360)
T ss_dssp CCCHH---HHHHHHHHBSSEEEEECTTGGGSSC-CCTHHHH---HCSSEEEEEESTTTTSCTTSCCEEEECCHHH-----
T ss_pred CcCHH---HHHHHHHHCCCEEEEECChHhhCCc-chhHHhc---cCCCEEEEecchHhhcCCccceeeEeeCHHH-----
Confidence 99955 5566667899999999999987432 1222222 2467899999999999999999999998776
Q ss_pred chhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCC
Q 013521 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSS 389 (441)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 389 (441)
.+.+..... ..+.+.+.|.++.+++++ .+++++.+++++++++.+.+.|+++|+.+.+ +.++|+|+.+++.+
T Consensus 233 ---~~~~~~~~~--~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~ 304 (360)
T 3hdo_A 233 ---IAALDKIRD--HYNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIP-SQGNYLFATPPDRD 304 (360)
T ss_dssp ---HHHHHHHSC--SCCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECC-CSSSEEEEECTTCC
T ss_pred ---HHHHHHhCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcC-CCccEEEEECCCCC
Confidence 455554432 345889999999999975 4568899999999999999999988888765 57889999998666
Q ss_pred hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 390 SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 390 ~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
..++.+.+. ++||.++|+.. +..++++||++. ++++++++++.|+++
T Consensus 305 ~~~l~~~l~-~~gi~v~~~~~--~~~~~~iRis~~-~~~e~~~l~~al~~~ 351 (360)
T 3hdo_A 305 GKRVYDGLY-ARKVLVRHFSD--PLLAHGMRISIG-TREEMEQTLAALKEI 351 (360)
T ss_dssp HHHHHHHHH-HTTEECBCCCS--TTTTTSEEEECC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCEEEEECCC--CCCCCEEEEEcC-CHHHHHHHHHHHHHH
Confidence 777777765 45999999875 345689999986 788999999998864
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-45 Score=356.02 Aligned_cols=328 Identities=17% Similarity=0.215 Sum_probs=253.7
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCc-----HHHHHHHHHHHhh-hCCCCC-CcEEEcCC
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGN-----MALRTAIADKFYK-DMGIEG-DEIFISDG 143 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~-----~~lr~~ia~~l~~-~~~~~~-~~I~~t~G 143 (441)
+.++|+|+.|.|+++.|+.+.+++.+.... .......+|++..|. .+||+++|+|+.. +..+++ ++|++|+|
T Consensus 21 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~G 99 (391)
T 3bwn_A 21 SDFVVNLDHGDPTAYEEYWRKMGDRCTVTI-RGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTG 99 (391)
T ss_dssp TTSCEECSSCCCGGGHHHHHHTGGGSCEEE-CTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEEH
T ss_pred CCCeeEcCCCCCCCCCCHHHHHhHHHHhhc-CccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeCC
Confidence 457899999999876666655555332211 111255689888998 9999999999874 566666 59999999
Q ss_pred cHHHHHH-HHHhcCCCC----EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEE
Q 013521 144 AQSDISR-LQMLLGSNV----TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDII 218 (441)
Q Consensus 144 ~~~al~~-l~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v 218 (441)
+++++.+ +..++++|| +|++++|+|+++...++..| .+++.++++.+ ++. .+++++|
T Consensus 100 ~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g------------~~~~~~~~d~~-~l~-----~~~~k~v 161 (391)
T 3bwn_A 100 STQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVR------------SGMYKWEGDAW-GFD-----KKGPYIE 161 (391)
T ss_dssp HHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTC------------BTTEEEEEEST-TCC-----CCSCEEE
T ss_pred hHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcC------------CeEEEecCCHH-HcC-----CCCCEEE
Confidence 9999998 567789999 99999999999999999888 46777777653 332 2578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++++||||||.+++ +|++.++.++++||+||+|.+ +...++.. ..+++|+++||||.+|++|+|+||+
T Consensus 162 ~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~----~~~~~l~~---~~~~~i~~~S~SK~~g~~GlRiG~~ 229 (391)
T 3bwn_A 162 LVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW----PHYTPITR---RQDHDIMLFTFSKITGHAGSRIGWA 229 (391)
T ss_dssp EEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS----TTTSCCCC---CBCCSEEEEEHHHHHSCGGGCEEEE
T ss_pred EECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC----CCCCcccc---CCCCeEEEEechhhcCCCccceEEE
Confidence 99999999999997 455522333499999999983 11222221 3578999999999999999999999
Q ss_pred Ee-eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 299 VV-PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG---------FQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 299 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
++ ++++ ++.+...+.....+++.+.|.++.+++++.. ..+++++++.++++++.+.+.|+++
T Consensus 230 ~~~~~~l--------~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 301 (391)
T 3bwn_A 230 LVKDKEV--------AKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKES 301 (391)
T ss_dssp EECCHHH--------HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EecCHHH--------HHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98 6666 4666666655556689999999999997431 3578999999999999999999987
Q ss_pred -CCeeeCC-------------CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHH
Q 013521 369 -GLKVNGG-------------KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEAC 434 (441)
Q Consensus 369 -g~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l 434 (441)
++.+..+ ++|+|+|++++.. +.+..+++++||.+.||+.|+. +++++|||++.+++++++++
T Consensus 302 ~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~---~~~~~~l~~~gV~v~pg~~fg~-~~~~iRis~~~~~e~i~~~~ 377 (391)
T 3bwn_A 302 DAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE---TDLVSELRRHKVMSRAGERCGS-DKKHVRVSMLSREDVFNVFL 377 (391)
T ss_dssp SSEECCCCCCEEETTTTEEECCCCSEEEEEESSS---CCHHHHHHHTTEECEEGGGGTC-CTTEEEEESCSCHHHHHHHH
T ss_pred CCcccccCCccccccccccCCCcceEEEecCCcH---HHHHHHHHHCCEEEccCCCCCC-CCCEEEEEecCCHHHHHHHH
Confidence 6665432 4566999999742 3456667778999999999975 57899999988899999999
Q ss_pred HHHHhhC
Q 013521 435 RRLKNFL 441 (441)
Q Consensus 435 ~~l~~~l 441 (441)
++|++++
T Consensus 378 ~~L~~~~ 384 (391)
T 3bwn_A 378 ERLANMK 384 (391)
T ss_dssp HHHHSCC
T ss_pred HHHHHHH
Confidence 9998764
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=339.25 Aligned_cols=318 Identities=19% Similarity=0.275 Sum_probs=256.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
++|+|+.|++++++|+.+ ++ ....+|++. +..++|+++|+++ ++++++|++|+|+++++.+ +
T Consensus 30 ~~i~l~~~~~~~~~~~~v------a~------~~~~~Y~~~-~~~~lr~~la~~~----~~~~~~v~~~~G~~~ai~~~~ 92 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL------TQ------QTLNRYPEC-QPKAVIENYAQYA----GVKPEQVLVSRGADEGIELLI 92 (356)
T ss_dssp CSEECSSCCCSSCCCCCC------CC------CCTTSCCCS-SCHHHHHHHHHHH----TSCGGGEEEESHHHHHHHHHH
T ss_pred ceEEeeCCCCCCCCCHhH------hh------hhhccCCCc-cHHHHHHHHHHHh----CCChHHEEEcCCHHHHHHHHH
Confidence 589999999998877765 11 345678654 6899999999997 7888999999999999997 5
Q ss_pred HHhcCCC-CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C-CCCccEEEEcCCCCc
Q 013521 152 QMLLGSN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T-TSRTDIIFFCSPNNP 226 (441)
Q Consensus 152 ~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~-~~~~~~v~i~~p~NP 226 (441)
..++++| |+|+++.|+|+++...++..| .+++.++.+.+ +..|++ + ..++++|++++||||
T Consensus 93 ~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~--~~~d~~~l~~~i~~~~~v~l~~p~np 158 (356)
T 1fg7_A 93 RAFCEPGKDAILYCPPTYGMYSVSAETIG------------VECRTVPTLDN--WQLDLQGISDKLDGVKVVYVCSPNNP 158 (356)
T ss_dssp HHHCCTTTCEEEECSSSCTHHHHHHHHHT------------CEEEECCCCTT--SCCCHHHHHTSCTTEEEEEEESSCTT
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEeeCCCC--CCCCHHHHHHHhcCCCEEEEeCCCCC
Confidence 6778999 999999999999999999888 58888888643 233322 1 127899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
||.++|.+++++|+++|+ +|+++|+||+|.++... .++..+.+..+++++++||||.+|++|+|+||+++++++
T Consensus 159 tG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~---~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~-- 232 (356)
T 1fg7_A 159 TGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ---ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEV-- 232 (356)
T ss_dssp TCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG---GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHH--
T ss_pred CCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC---CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHH--
Confidence 999999999999999999 99999999999987621 233333223467899999999999999999999998877
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCceEEEEEc
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-LKVNGGKNAPYVWVQF 385 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~ 385 (441)
++.+..... .++++.+.|.++.+++++.+++++++.+++++++++.+.+.|++++ +....+.+++|+|+++
T Consensus 233 ------~~~l~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 304 (356)
T 1fg7_A 233 ------INLLMKVIA--PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARF 304 (356)
T ss_dssp ------HHHHHHHSC--SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEE
T ss_pred ------HHHHHHhcC--CCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEEC
Confidence 355554332 2358899999999999854444588999999999999999999885 3233346889999999
Q ss_pred CCCChHHHHHHHHHhcCeEEeC-CCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 386 PGSSSWDVFAEILEKTHILTIP-GSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 386 ~~~~~~~~~~~ll~~~gi~v~p-g~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+ +..++.+.| .++||.++| |..|+. ++++||++. +++++++++++|++++
T Consensus 305 ~--~~~~l~~~L-~~~gI~v~~~g~~~~~--~~~iRis~~-~~~e~~~~~~~l~~~~ 355 (356)
T 1fg7_A 305 K--ASSAVFKSL-WDQGIILRDQNKQPSL--SGCLRITVG-TREESQRVIDALRAEQ 355 (356)
T ss_dssp T--THHHHHHHH-HHTTEECEECTTSTTC--TTEEEEECC-CHHHHHHHHHHHHTCC
T ss_pred C--CHHHHHHHH-HHCCEEEEECCCCCCC--CCeEEEEeC-CHHHHHHHHHHHHhhc
Confidence 7 566777777 456999999 887764 469999986 5889999999998763
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=335.17 Aligned_cols=328 Identities=16% Similarity=0.240 Sum_probs=265.9
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
++++|+|+.|.+++++|+.+.+++.+.+.. ..+| +..+..++|+++|+++ ++++++|++|+|+++++.+
T Consensus 25 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~------~~~y-~~~~~~~l~~~la~~~----~~~~~~i~~~~g~t~al~~ 93 (361)
T 3ftb_A 25 GRELLDYSSNINPLGIPKSFLNNIDEGIKN------LGVY-PDVNYRRLNKSIENYL----KLKDIGIVLGNGASEIIEL 93 (361)
T ss_dssp ---CEETTCCCCTTCSCHHHHTTHHHHHHG------GGSC-CCTTCHHHHHHHHHHH----TCCSCEEEEESSHHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHHH------hcCC-CCccHHHHHHHHHHHh----CCCcceEEEcCCHHHHHHH
Confidence 457999999999998899999999998864 2457 4568899999999997 7889999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCcc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPT 227 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPt 227 (441)
+...+ |+|+++.|+|+++...+...| .+++.++.+.++++.++ +++ .+ ++++++++|||||
T Consensus 94 ~~~~~---d~vi~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~npt 157 (361)
T 3ftb_A 94 SISLF---EKILIIVPSYAEYEINAKKHG------------VSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPN 157 (361)
T ss_dssp HHTTC---SEEEEEESCCTHHHHHHHHTT------------CEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTT
T ss_pred HHHHc---CcEEEecCChHHHHHHHHHcC------------CeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCC
Confidence 65555 899999999999999999988 58999999876555442 221 23 8999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE-eeccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV-VPEELRY 306 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~-~~~~~~~ 306 (441)
|.++|.+++++|+++|++||+++|+||+|.++.++ .+.+.....+..+++++++|+||.+|++|+|+||++ .++++
T Consensus 158 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~-- 234 (361)
T 3ftb_A 158 GGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEI-- 234 (361)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHH--
T ss_pred CCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHH--
Confidence 99999999999999999999999999999998876 334444444445778999999999999999999999 66665
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eeCCCCceEEEEE
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK-VNGGKNAPYVWVQ 384 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~ 384 (441)
.+.+..... ..+.+.+.|.++.+++++ .+++++.+++++++++.+.+.|+++ ++. +.+ +.|.|+|++
T Consensus 235 ------~~~~~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~ 303 (361)
T 3ftb_A 235 ------AAKIKAKQN--PWNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFS-PHANFVLCR 303 (361)
T ss_dssp ------HHHHHTTSC--TTCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEC-CSSSEEEEE
T ss_pred ------HHHHHhhCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecC-CCCeEEEEE
Confidence 345544332 346789999999999984 4678999999999999999999988 787 655 578899999
Q ss_pred cCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCH--HHHHHHHHHHHhh
Q 013521 385 FPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHR--EYISEACRRLKNF 440 (441)
Q Consensus 385 ~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~--~~~~~~l~~l~~~ 440 (441)
++..+..++...++++ ||.+.||+.|+..+++++||++...+ +++.++++++.+.
T Consensus 304 ~~~~~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 304 LENISGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIKDEKKNTKFLRALKGVENN 360 (361)
T ss_dssp ESSSCHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 9865667787877766 99999999998777899999986422 3455555555543
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=344.95 Aligned_cols=344 Identities=21% Similarity=0.294 Sum_probs=275.7
Q ss_pred CCCeEEeCCCCCCCC--CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEEcCCcHH
Q 013521 71 DARLIRLGIGDTTQP--IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~--~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~t~G~~~ 146 (441)
+.++|+|+.|.++.. +++.+.+++.+.+.... .... |++..|..++|+++|+++.+.++ +++++|++|+|+++
T Consensus 33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~ 109 (407)
T 2zc0_A 33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEP--KSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTG 109 (407)
T ss_dssp SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCG--GGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHH
T ss_pred CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcc--cccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHH
Confidence 457899999886543 67889999999887532 2345 88888999999999999976334 77899999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C------CCcc
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T------SRTD 216 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~------~~~~ 216 (441)
++.+ +..++++||+|+++.|+|+++...+...| .+++.++.+++ +++++ +++ . ++++
T Consensus 110 a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~~ 176 (407)
T 2zc0_A 110 ALDLLGRVLIDPGDVVITENPSYINTLLAFEQLG------------AKIEGVPVDND-GMRVDLLEEKIKELKAKGQKVK 176 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTT------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEcccCCC-CCCHHHHHHHHHhhhcccCCce
Confidence 9998 56778999999999999999998888888 58888888654 33222 211 1 2788
Q ss_pred EEE-EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccce
Q 013521 217 IIF-FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 217 ~v~-i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
+|+ +++||||||.++|.+++++|+++|++||+++|+||+|+.+.+++. +.++..++ ..+++++++||||.++ +|+|
T Consensus 177 ~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~-~G~r 254 (407)
T 2zc0_A 177 LIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD-NEGRVIVAGTLSKVLG-TGFR 254 (407)
T ss_dssp EEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC-SSCCEEEEEESTTTTC-TTSC
T ss_pred EEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC-CCCCEEEEcccccccC-CCcc
Confidence 875 569999999999999999999999999999999999999877543 34565553 2357899999999999 9999
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHHHHhC--CC
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYKENAKIIVDAFQSL--GL 370 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~--g~ 370 (441)
+||+++++++ .+.+.........+++.+.|.++.++++.... .++++.++.++++++.+.+.|++. ++
T Consensus 255 ~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (407)
T 2zc0_A 255 IGWIIAEGEI--------LKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNA 326 (407)
T ss_dssp CEEEECCHHH--------HHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred eEEEecCHHH--------HHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999998776 45566555444455788999999888875322 456788899999999999999874 67
Q ss_pred eeeCCCCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCC--CCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 371 KVNGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPG--GNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 371 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
.+..+.+++|+|++++ +.+..++.+.+++++||.+.||..|... +++++||++.. +++++++++++|+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~ 400 (407)
T 2zc0_A 327 EFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKL 400 (407)
T ss_dssp CBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHH
T ss_pred EEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 7766678899999997 4466778888777669999999988653 46899999865 689999999999875
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=350.27 Aligned_cols=337 Identities=17% Similarity=0.174 Sum_probs=264.0
Q ss_pred CCCeEEeCCC---CCCCCC--cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCC--cEEEc
Q 013521 71 DARLIRLGIG---DTTQPI--PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGD--EIFIS 141 (441)
Q Consensus 71 ~~~~i~l~~g---~~~~~~--~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~--~I~~t 141 (441)
.+++|+|+.| +|+.++ ++.+.+++.+.+.. ....+|++..|..++|+++++++.+..+ ++++ +|++|
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 123 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEA----GLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQA 123 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhcc----CCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEEC
Confidence 4579999999 565544 48999999998875 3556898889999999999999965222 3678 99999
Q ss_pred CCcHHHHHHH---HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-------
Q 013521 142 DGAQSDISRL---QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------- 211 (441)
Q Consensus 142 ~G~~~al~~l---~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------- 211 (441)
+|+++++.++ ..++++||+|++++|+|+++...+...| .+++.++..++.++.+|++.
T Consensus 124 ~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~ 191 (420)
T 4f4e_A 124 LGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAG------------FEVVAYPYYDAKTNGVNFDGMLAALNG 191 (420)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTT------------CCEEEEECEETTTTEECHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcC------------CeEEEeeeeccccCccCHHHHHHHHHh
Confidence 9999999874 3567999999999999999999999998 58888888322233333221
Q ss_pred -CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCcccccCCCcceeEEEecCCccc
Q 013521 212 -TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYEIPGAREVAIEISSFSKFA 288 (441)
Q Consensus 212 -~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~ 288 (441)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. +.++..+.+..+++++++||||.+
T Consensus 192 ~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 271 (420)
T 4f4e_A 192 YEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSF 271 (420)
T ss_dssp CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccC
Confidence 15678888899999999999999999999999999999999999999988642 344544443457899999999999
Q ss_pred CCccceeEEEEee--c-cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHH
Q 013521 289 GFTGVRLGWTVVP--E-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYYKENAKI 360 (441)
Q Consensus 289 ~~~G~r~G~l~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~ 360 (441)
|++|+|+||+++. + +.+. ++...+.......+.+++.+.|.++.+++.+.. .+++++++++++++++.
T Consensus 272 ~~~G~RiG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 4f4e_A 272 SLYGERVGALSIITDSKDEAA----RVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNG 347 (420)
T ss_dssp TCGGGCEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCcEEEEEEcCCHHHHH----HHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999752 2 2210 001223333334555678888988888887543 35689999999999999
Q ss_pred HHHHHHhC----CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHH
Q 013521 361 IVDAFQSL----GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACR 435 (441)
Q Consensus 361 l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~ 435 (441)
+.+.|+++ ++.+..+.+|+|+|+.++ .+.+..+++++||.+.|+ .||+++. ++++++++++
T Consensus 348 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~l~~~gI~v~~~----------~Ris~~~~~~~~i~~~~~ 413 (420)
T 4f4e_A 348 LVERLKAAGIERDFSFINAQRGMFSYSGLT----SAQVDRLREEFGIYAVST----------GRICVAALNTRNLDVVAN 413 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHSCSSEEECCCC----HHHHHHHHHHHCEECCTT----------SEEEGGGCCTTTHHHHHH
T ss_pred HHHHHHhcCCCCCceeECCCccEEEEeCCC----HHHHHHHHHhCCEEecCC----------CeEEEecCCHHHHHHHHH
Confidence 99999987 677777789999998874 355677777789999985 2999865 7888999999
Q ss_pred HHHhhC
Q 013521 436 RLKNFL 441 (441)
Q Consensus 436 ~l~~~l 441 (441)
+|++++
T Consensus 414 ~l~~~l 419 (420)
T 4f4e_A 414 AIAAVL 419 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998863
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-44 Score=351.14 Aligned_cols=338 Identities=14% Similarity=0.136 Sum_probs=258.6
Q ss_pred CCCCeEEeCCCCC-CCCCc----HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEE--
Q 013521 70 PDARLIRLGIGDT-TQPIP----DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFI-- 140 (441)
Q Consensus 70 ~~~~~i~l~~g~~-~~~~~----~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~-- 140 (441)
..+++|+|+.|.| +...+ +.+.+++.+.... ....+|.+..|..++|+++|+|+.+..+ +++++|++
T Consensus 26 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~ 101 (401)
T 7aat_A 26 TNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK----KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQ 101 (401)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCCceeeeeeeEECCCCCEechHHHHHHHHHhccc----ccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEe
Confidence 3456899999997 65433 3566666665542 3566898888999999999999975333 56899987
Q ss_pred cCCcHHHHHH-HHHh---cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC-------
Q 013521 141 SDGAQSDISR-LQML---LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL------- 209 (441)
Q Consensus 141 t~G~~~al~~-l~~l---~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~------- 209 (441)
|+|+++++++ +..+ +++||.|++++|+|+++...++..| .+++.++++.+.++..++
T Consensus 102 t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l 169 (401)
T 7aat_A 102 GISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAG------------LQLQAYRYYDPKTCSLDFTGAMEDI 169 (401)
T ss_dssp EEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEETTTTEECHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcC------------CeeEeeeeeccccCccCHHHHHHHH
Confidence 9999999997 3333 4899999999999999999999998 588888885432322332
Q ss_pred CC-CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC---CCcccccCCCcceeEEEecCC
Q 013521 210 ST-TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS---PRSIYEIPGAREVAIEISSFS 285 (441)
Q Consensus 210 ~~-~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~---~~~~~~~~~~~~~~i~i~S~S 285 (441)
+. .++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+.+..+++++++|||
T Consensus 170 ~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~s 249 (401)
T 7aat_A 170 SKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYA 249 (401)
T ss_dssp TTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECT
T ss_pred HhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCC
Confidence 22 35788999999999999999999999999999999999999999999887642 223333222356789999999
Q ss_pred cccCCccceeEEEEeec---cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHH
Q 013521 286 KFAGFTGVRLGWTVVPE---ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYYKEN 357 (441)
Q Consensus 286 K~~~~~G~r~G~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~ 357 (441)
|.+|++|+|+||++++. +.. ..+.+.+.......+.+++...|.++..++.+.. .+++++++++++++
T Consensus 250 K~~~~~G~RiG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (401)
T 7aat_A 250 KNMGLYGERAGAFTVICRDAEEA----KRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISM 325 (401)
T ss_dssp TTSCCGGGCEEEEEEECSSHHHH----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCceEEEEEEeCCHHHH----HHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999732 210 0013444444455555677788887777776532 35678889999999
Q ss_pred HHHHHHHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHH
Q 013521 358 AKIIVDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISE 432 (441)
Q Consensus 358 ~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~ 432 (441)
++.+.+.|++++ +.+..+.+++|+|++++ .+++..+++++||.+.|+ +||+++. +.+++++
T Consensus 326 r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~gi~v~~~----------~Ris~~~~~~~~i~~ 391 (401)
T 7aat_A 326 RTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK----PEQVERLTKEFSIYMTKD----------GRISVAGVASSNVGY 391 (401)
T ss_dssp HHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHH
T ss_pred HHHHHHHHHhcCCCCCCceecCCcceEEecCCC----HHHHHHHHHhCCEeccCC----------CeEEeccCChhhHHH
Confidence 999999999875 66666788999998774 456678888889999764 6999854 6677999
Q ss_pred HHHHHHhhC
Q 013521 433 ACRRLKNFL 441 (441)
Q Consensus 433 ~l~~l~~~l 441 (441)
++++|++++
T Consensus 392 ~~~~l~~~~ 400 (401)
T 7aat_A 392 LAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998763
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=338.55 Aligned_cols=323 Identities=17% Similarity=0.284 Sum_probs=256.4
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+++++||+.|++++++++.+.+++.+.+. ...+|++..+ .++|+++|+++ ++++++|++|+|+++++.+
T Consensus 14 g~~~id~~~~~~~~~~~~~v~~a~~~~~~------~~~~y~~~~~-~~lr~~la~~~----~~~~~~i~~t~g~~~al~~ 82 (350)
T 3fkd_A 14 SSEIVNFSTTVWTDGDKDHLEKHLVENLN------CIRHYPEPDA-GTLRQMLAKRN----SVDNNAILVTNGPTAAFYQ 82 (350)
T ss_dssp --CCEECSCCSCCCSCCHHHHHHHHHTGG------GGGSCCCTTC-HHHHHHHHHHT----TCCGGGEEEESHHHHHHHH
T ss_pred cccEEEccCCCCCCCCCHHHHHHHHHhHh------HHhcCCCCcH-HHHHHHHHHHh----CcCHHHEEEcCCHHHHHHH
Confidence 35799999999999999999999988763 2346866656 89999999996 7889999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeec-CCCCCccCCCCCCCCccEEEEcCCCCcccc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNC-RPENNFFPDLSTTSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~ 229 (441)
+...+. ||+|+++.|+|+++...++..| .+++.++. ++++++.+ +++++|++++||||||.
T Consensus 83 ~~~~l~-gd~Vi~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~-----~~~~~v~i~~p~nptG~ 144 (350)
T 3fkd_A 83 IAQAFR-GSRSLIAIPSFAEYEDACRMYE------------HEVCFYPSNEDIGEADF-----SNMDFCWLCNPNNPDGR 144 (350)
T ss_dssp HHHHTT-TCEEEEEESCCHHHHHHHHHTT------------CEEEEEETTSCGGGSCC-----TTCSEEEEESSCTTTCC
T ss_pred HHHHHC-CCEEEEeCCCcHHHHHHHHHcC------------CeEEEEecCCccccCcc-----CCCCEEEEeCCCCCcCC
Confidence 544444 9999999999999999999998 58999998 65444433 67899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~ 309 (441)
++|.+++++|+++|+++ +||+||+|.++.+++.+. ...++ ..+++++++||||.+|++|+|+||+++++++
T Consensus 145 ~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~-~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~----- 215 (350)
T 3fkd_A 145 LLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR-PADIK-GRKNLVMVYSFSHAYGIPGLRIGYIVANKDF----- 215 (350)
T ss_dssp CCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC-GGGGT-TCSSEEEEEESHHHHSCGGGCCEEEECCHHH-----
T ss_pred CCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchh-hHHhh-cCCCEEEEecCchhccCcchheEeEEeCHHH-----
Confidence 99999999998888765 999999999887765332 23333 3577899999999999999999999998776
Q ss_pred chhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcCCC
Q 013521 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGS 388 (441)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 388 (441)
.+.+..... ..+++.+.|.++.+++++.. .+.++.++.. ++++.+.+.|+++ ++.+.+ ..++|+|++++..
T Consensus 216 ---~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~ 287 (350)
T 3fkd_A 216 ---MKRVAAFST--PWAVNALAIEAAKFILIHPA-QFTLPIRKWQ-RNTVDFITALNRLDGVEVHP-SGTTFFLLRLKKG 287 (350)
T ss_dssp ---HHHHHTTCC--TTCSCHHHHHHHHHHHHCTT-TTCCCHHHHH-HHHHHHHHHHHHSTTEEECC-CSSSEEEEEESSS
T ss_pred ---HHHHHHhCC--CCCCCHHHHHHHHHHHhCHH-HHHHHHHHHH-HHHHHHHHHHhcCCCcEECC-CCCcEEEEECCCC
Confidence 355554332 34588999999999887543 1223334444 8889999999988 888765 5788999999854
Q ss_pred ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 389 SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 389 ~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+..++.+.|++++||.+.||+.|+..++++|||++. ++++++++++.|+++
T Consensus 288 ~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~ 338 (350)
T 3fkd_A 288 TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETF 338 (350)
T ss_dssp CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHH
Confidence 677888888875799999999998777899999986 556666666666553
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=344.87 Aligned_cols=338 Identities=17% Similarity=0.174 Sum_probs=263.8
Q ss_pred CCCCeEEeCCC---CCCCCC--cHHHHHHHHH-HHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCC--cEE
Q 013521 70 PDARLIRLGIG---DTTQPI--PDIITSAMAE-HAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGD--EIF 139 (441)
Q Consensus 70 ~~~~~i~l~~g---~~~~~~--~~~~~~al~~-~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~--~I~ 139 (441)
..+++++|+.| +++.++ ++.+.+++.+ .+.. ....+|++..|..++|+++++++.+..+ ++++ +|+
T Consensus 24 ~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~ 99 (397)
T 3fsl_A 24 PRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP----HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATI 99 (397)
T ss_dssp CCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSC----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCc----cccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEE
Confidence 44679999999 555544 4899999998 8764 3556898888999999999999964222 3688 999
Q ss_pred EcCCcHHHHHHH---HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----
Q 013521 140 ISDGAQSDISRL---QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST----- 211 (441)
Q Consensus 140 ~t~G~~~al~~l---~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~----- 211 (441)
+|+|+++++.++ ..++++||+|+++.|+|+++...++..| .+++.++..++.++..|++.
T Consensus 100 ~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l 167 (397)
T 3fsl_A 100 QTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAG------------FEVSTYPWYDEATNGVRFNDLLATL 167 (397)
T ss_dssp EESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTT------------CCEEEECCEETTTTEECHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcC------------CceEEEeeeeccCCcCcHHHHHHHH
Confidence 999999999874 4567999999999999999999999988 58888888432333333221
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccccCCCcceeEEEecCCc
Q 013521 212 ---TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYEIPGAREVAIEISSFSK 286 (441)
Q Consensus 212 ---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~~~~~~~~~i~i~S~SK 286 (441)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. ...++..+.+..+++++++||||
T Consensus 168 ~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 247 (397)
T 3fsl_A 168 KTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSK 247 (397)
T ss_dssp TTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred HhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccc
Confidence 1567888888999999999999999999999999999999999999988763 23445444334678999999999
Q ss_pred ccCCccceeEEEEeec---cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHH
Q 013521 287 FAGFTGVRLGWTVVPE---ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYYKENA 358 (441)
Q Consensus 287 ~~~~~G~r~G~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~ 358 (441)
.+|++|+|+||++++. +.+. +....+.......+.+++.++|.++.+++.+.. .++++++++++++++
T Consensus 248 ~~~~~G~riG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 323 (397)
T 3fsl_A 248 IFSLYGERVGGLSVMCEDAEAAG----RVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMR 323 (397)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCCeeEEEEecCCHHHHH----HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998642 2210 001112222233455568889998888887543 356889999999999
Q ss_pred HHHHHHHHhC----CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHH
Q 013521 359 KIIVDAFQSL----GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEA 433 (441)
Q Consensus 359 ~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~ 433 (441)
+.+.+.|+++ |+.+..+.+|+|+|++++ .+.+..+++++||.+.||. ||+++. ++++++++
T Consensus 324 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~v~~g~----------Ris~~~~~~~~i~~~ 389 (397)
T 3fsl_A 324 QELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----AAQVDRLREEFGVYLIASG----------RMCVAGLNTANVQRV 389 (397)
T ss_dssp HHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC----HHHHHHHHHTTCEECCTTC----------EEEGGGCCTTTHHHH
T ss_pred HHHHHHHHhcCCCCCceeecCCceEEEecCCC----HHHHHHHHHhCCEEECCCC----------eEEEEecCHhhHHHH
Confidence 9999999987 677777778999998874 3456777778899999873 999866 77889999
Q ss_pred HHHHHhhC
Q 013521 434 CRRLKNFL 441 (441)
Q Consensus 434 l~~l~~~l 441 (441)
+++|++++
T Consensus 390 ~~~l~~~l 397 (397)
T 3fsl_A 390 AKAFAAVM 397 (397)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhhC
Confidence 99999875
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-43 Score=338.79 Aligned_cols=327 Identities=18% Similarity=0.284 Sum_probs=269.9
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSDISR 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~al~~ 150 (441)
+++|+|+.|++++++|+.+.+++.+.+.. ....+|++ .+..++|+++|+++ ++ ++++|++|+|+++++.+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~-~~~~~l~~~la~~~----g~~~~~~i~~~~g~t~a~~~ 100 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGE----VALNRYPV-PSSEALRAKLKEVM----QVPAGMEVLLGNGSDEIISM 100 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHH----HHTTCSCC-CCHHHHHHHHHHHH----TCCTTCEEEEEEHHHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhh----hhhhcCCC-CcHHHHHHHHHHHh----CCCCcceEEEcCCHHHHHHH
Confidence 56899999999999999999999998874 23456754 58899999999997 66 78899999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC-CccEEEEcCCCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS-RTDIIFFCSPNN 225 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~-~~~~v~i~~p~N 225 (441)
+..++++||+|+++.|+|+++...++..| .+++.++.+++..++++ +++ .+ ++++|++++|||
T Consensus 101 ~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~n 168 (367)
T 3euc_A 101 LALAAARPGAKVMAPVPGFVMYAMSAQFAG------------LEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNN 168 (367)
T ss_dssp HHHHTCCTTCEEEEEESCSCCSCHHHHTTT------------CEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCT
T ss_pred HHHHHcCCCCEEEEcCCCHHHHHHHHHHcC------------CeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCC
Confidence 57778999999999999999999988888 58899998763332221 111 23 799999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHc--CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 226 PTGHAATWQQLKKLVEFAKAN--GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~--~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
|||.++|.+++++|+++|++| |+++|+||+|.++...+ ..+ .+. ..++++++.||||. +++|+|+||++++++
T Consensus 169 ptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~--~~~-~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~ 243 (367)
T 3euc_A 169 PTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMS--RLT-DFGNLLVMRTVSKL-GLAGIRLGYVAGDPQ 243 (367)
T ss_dssp TTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGG--GGG-TCTTEEEEEECCCT-TSCSCCEEEEEECHH
T ss_pred CCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHH--HHh-hCCCEEEEecchhh-cccccCceeeeeCHH
Confidence 999999999999999999999 99999999999876433 222 222 34678999999999 889999999999877
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVW 382 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 382 (441)
+ .+.+..... ..+.+.+.|.++.+++++ .+++++.+++++++++.+.+.|+++ |+.+.+ .+++|+|
T Consensus 244 ~--------~~~~~~~~~--~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~~~~~ 310 (367)
T 3euc_A 244 W--------LEQLDKVRP--PYNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFP-SAANFLL 310 (367)
T ss_dssp H--------HHHHGGGCC--SSCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECC-CSSSEEE
T ss_pred H--------HHHHHHhCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECC-CCCeEEE
Confidence 6 344443322 345889999999999985 5678999999999999999999998 888654 6889999
Q ss_pred EEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 383 VQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 383 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++++ +..++.+.+ +++||.+.||..|+...++++||++. +++++++++++|++++
T Consensus 311 ~~~~--~~~~l~~~l-~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 311 ARVP--DAAQTFDRL-LARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASL 365 (367)
T ss_dssp EECS--CHHHHHHHH-HTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHT
T ss_pred EECC--CHHHHHHHH-HHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHh
Confidence 9997 566676665 56699999999887767899999976 8899999999999874
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-44 Score=351.69 Aligned_cols=339 Identities=15% Similarity=0.228 Sum_probs=269.8
Q ss_pred CeEEeCCCCCC---CCCcHHHHHHHH--HHHhhccCCCCCCCC-CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 73 RLIRLGIGDTT---QPIPDIITSAMA--EHAFALSTVKGYKGY-GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~---~~~~~~~~~al~--~~~~~~~~~~~~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
..|+|+.|.|+ ++.|+.+.+++. +.+.. .....+| ++..|..+||+++|+++ ++++++|++|+|+++
T Consensus 26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~---~~~~~~Yp~~~~g~~~lr~~ia~~~----~~~~~~i~~t~G~~~ 98 (423)
T 3ez1_A 26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRMD---GLDLRNYPGGVAGLPSARALFAGYL----DVKAENVLVWNNSSL 98 (423)
T ss_dssp CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEET---TEETTSSCSCTTCCHHHHHHHHHHT----TSCGGGEEECSSCHH
T ss_pred ceEecCCCCCChHhCCCcHHHHHHHhhhHHhhc---chhhhCCCCCCCChHHHHHHHHHHh----CCChhhEEEeCCcHH
Confidence 57999999998 777778887775 43331 1334689 88889999999999997 788999999999999
Q ss_pred HHH--H-HHHhcC--C---------CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC
Q 013521 147 DIS--R-LQMLLG--S---------NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST 211 (441)
Q Consensus 147 al~--~-l~~l~~--~---------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~ 211 (441)
++. + +..+++ + ||+|+++.|+|+++...+...| .+++.++.+.+ +++++ +++
T Consensus 99 al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~l~~ 165 (423)
T 3ez1_A 99 ELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLG------------FELLTVDMQSD-GPDVDAVER 165 (423)
T ss_dssp HHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHT------------CEEEEEEEETT-EECHHHHHH
T ss_pred HHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcC------------CEEEeccCCCC-CCCHHHHHH
Confidence 996 5 566677 7 5999999999999999999999 58889998764 33322 221
Q ss_pred ----CCCccEEEEc-CCCCccccCCCHHHHHHHHHHH-HHcCcEEEEcccccccccCC----CCCccccc---CCCccee
Q 013521 212 ----TSRTDIIFFC-SPNNPTGHAATWQQLKKLVEFA-KANGSIIVYDSAYAAYITDP----SPRSIYEI---PGAREVA 278 (441)
Q Consensus 212 ----~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a-~~~~~~ii~De~~~~~~~~~----~~~~~~~~---~~~~~~~ 278 (441)
.+++++|+++ +||||||.++|.+++++|+++| ++||++||+||+|..+.+.+ .+.++..+ .+.++++
T Consensus 166 ~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (423)
T 3ez1_A 166 LAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRA 245 (423)
T ss_dssp HHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSE
T ss_pred HHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeE
Confidence 3688998765 8999999999999999999999 99999999999999655433 12344443 1346789
Q ss_pred EEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC--CcH-HHHHHHHHHHH
Q 013521 279 IEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP--DGF-QALRTVIDYYK 355 (441)
Q Consensus 279 i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~-~~~~~~~~~~~ 355 (441)
++++||||.+ ++|+|+||+++++++ ++.+.........+++.+.|.++.+++.+ ..+ +++++.++.++
T Consensus 246 i~~~S~sK~~-~~G~r~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 316 (423)
T 3ez1_A 246 FVFASTSKIT-FAGAGLGFVASSEDN--------IRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIA 316 (423)
T ss_dssp EEEEESTTTS-CSSSSCEEEEECHHH--------HHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred EEEeCchhhc-cCCcceEEEEeCHHH--------HHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999994 699999999999887 46677666666677899999999998885 333 67888899999
Q ss_pred HHHHHHHHHHHh----CC--CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeC-CCCcCC---CCCCeEEEEeec
Q 013521 356 ENAKIIVDAFQS----LG--LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP-GSGFGP---GGNEHIRVSAFG 425 (441)
Q Consensus 356 ~~~~~l~~~L~~----~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~---~~~~~iRls~~~ 425 (441)
++++.+.+.|.+ .+ +.+..+.+|+|+|++++..+...+ ..+++++||.+.| |..|.. .++++|||+++.
T Consensus 317 ~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~-~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~ 395 (423)
T 3ez1_A 317 PKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRV-VKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTR 395 (423)
T ss_dssp HHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHH-HHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSS
T ss_pred HHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHH-HHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCC
Confidence 998888887765 34 677777889999999985444444 4555667999999 777753 357899999965
Q ss_pred -CHHHHHHHHHHHHhhC
Q 013521 426 -HREYISEACRRLKNFL 441 (441)
Q Consensus 426 -~~~~~~~~l~~l~~~l 441 (441)
+++++++++++|++++
T Consensus 396 ~~~~~i~~~~~~l~~~l 412 (423)
T 3ez1_A 396 PPVEEVRTAMQVVAACI 412 (423)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 8999999999998753
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=359.88 Aligned_cols=342 Identities=18% Similarity=0.231 Sum_probs=268.4
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC-CCcCcHHHHHHHHHHHhhh----CCCC-CCcEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG-AEQGNMALRTAIADKFYKD----MGIE-GDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~----~~~~-~~~I~~t~G~~~ 146 (441)
++++|+.|.++.+ |+.+++++.+.+.. .+|+ +..|..++|+++++++.+. ..++ +++|++|+|+++
T Consensus 104 ~~i~l~~g~~~~~-~~~~v~a~~~~~~~-------~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~ 175 (533)
T 3f6t_A 104 DAVNYCHTELGLN-RDKVVAEWVNGAVA-------NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTA 175 (533)
T ss_dssp HHHHHHHHTTCCC-HHHHHHHHHHHHHT-------CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHH
T ss_pred hheeccCCCCCcC-CcHHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHH
Confidence 4789999998886 56666666666643 1354 6789999999999999543 2333 479999999999
Q ss_pred HHHHH-HH-----hcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC--CCCccCCCCC-----CC
Q 013521 147 DISRL-QM-----LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP--ENNFFPDLST-----TS 213 (441)
Q Consensus 147 al~~l-~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~~~-----~~ 213 (441)
++.++ .. ++++||.|+++.|+|+++...+...| .+++.++++. +.++..+++. .+
T Consensus 176 al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~d~~~l~~~l~~ 243 (533)
T 3f6t_A 176 AIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKD------------YELVEVDLHSYEKNDWEIEPNEIEKLKDP 243 (533)
T ss_dssp HHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGG------------SEEEEECCCEETTTTSEECHHHHHHHSCT
T ss_pred HHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcC------------CeEEEEEecCCcccCCCCCHHHHHHHhCC
Confidence 99984 44 68999999999999999999888888 5788888764 3344444322 36
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHH-HcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAK-ANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~-~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
++++|++++||||||.++|.+++++|+++|+ +||++||+||+|+++.++ +.++... .++++++++||||.+|++|
T Consensus 244 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~--~~~~~~~--~~~~~i~~~S~SK~~g~~G 319 (533)
T 3f6t_A 244 SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN--FKSIYSV--VPYNTMLVYSYSKLFGCTG 319 (533)
T ss_dssp TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT--CCCHHHH--SGGGEEEEEESHHHHTCGG
T ss_pred CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC--ccCHhhc--CCCCEEEEecCcccCCCcc
Confidence 8999999999999999999999999999999 589999999999988764 3455554 3578999999999999999
Q ss_pred ceeEEEEeecc-----ccccCC--------------------ch----hHHHHHHHHhhhcCCCcHHHHHH----HHHhc
Q 013521 293 VRLGWTVVPEE-----LRYSNG--------------------YP----VIKDFNRIVCTCFNGASNIVQAG----GLACL 339 (441)
Q Consensus 293 ~r~G~l~~~~~-----~~~~~~--------------------~~----~~~~~~~~~~~~~~~~~~~~~~a----~~~~l 339 (441)
+|+||++++++ ++..-. .+ +.+.+.........+++.+.|.+ +.+.+
T Consensus 320 ~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L 399 (533)
T 3f6t_A 320 WRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHL 399 (533)
T ss_dssp GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Confidence 99999999987 321000 00 01112223344455678888887 45666
Q ss_pred C-----CCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC-----------------CChHHHHHHH
Q 013521 340 S-----PDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG-----------------SSSWDVFAEI 397 (441)
Q Consensus 340 ~-----~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l 397 (441)
. +....+++++++.++++++.+.+.|. .++.+..+.+++|+|++++. .++.+++..+
T Consensus 400 ~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 478 (533)
T 3f6t_A 400 LTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKL 478 (533)
T ss_dssp TTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHH
Confidence 5 23447889999999999999999998 78887778899999999863 3566888888
Q ss_pred HHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 398 LEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 398 l~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
++++||.+.||+.|+. +++++|||++. +++++++++++|+++
T Consensus 479 l~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~ 521 (533)
T 3f6t_A 479 AEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLEL 521 (533)
T ss_dssp HHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHH
T ss_pred HHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHH
Confidence 9888999999999976 46799999974 899999999999876
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-46 Score=366.13 Aligned_cols=341 Identities=19% Similarity=0.296 Sum_probs=275.2
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~t~G~~~al~~ 150 (441)
++++|+.|++++++|+.+.+++.+.+.. ...+|++. ..++|+++++|+.+.++ +++++|++|+|+++++.+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~ 104 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQ-----LVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISI 104 (392)
Confidence 7899999999998999999999988752 34567554 88999999999976334 788999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCC-CccCCC---CC--C-CCccEEEEcC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDL---ST--T-SRTDIIFFCS 222 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~---~~--~-~~~~~v~i~~ 222 (441)
+..++++||+|+++.|+|+++...+...| .+++.++.++++ ++..++ ++ . .+++++++++
T Consensus 105 ~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~ 172 (392)
T 3b1d_A 105 AIQAFTKEGEAVLINSPVYPPFARSVRLNN------------RKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCN 172 (392)
Confidence 56678999999999999999998888887 477777775332 233332 22 1 5788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC-CcceeEEEecCCcccCCccceeEEEEe
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++. ..+++++++||||.+|++|+|+||+++
T Consensus 173 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 252 (392)
T 3b1d_A 173 PHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAII 252 (392)
Confidence 999999999999999999999999999999999999887643 345555532 156789999999999999999999999
Q ss_pred ecc-ccccCCchhHHHHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCCC
Q 013521 301 PEE-LRYSNGYPVIKDFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-L-GLKVNGGK 376 (441)
Q Consensus 301 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~ 376 (441)
+++ + ++.+....... +.+++.+.|.++.+++++ ..++++++++.++++++.+.+.|++ + ++.+.++.
T Consensus 253 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 323 (392)
T 3b1d_A 253 ENPTL--------CAQFKHQQLVNNHHEVSSLGYIATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQ 323 (392)
Confidence 865 5 34444433332 234688889888888874 3467789999999999999999987 4 78887777
Q ss_pred CceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 377 NAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 377 ~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+++++|++++. .+..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 324 ~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l 390 (392)
T 3b1d_A 324 GTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCL 390 (392)
Confidence 88889999974 355677777776679999999999866678999999778899999999998764
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=334.31 Aligned_cols=307 Identities=21% Similarity=0.304 Sum_probs=257.3
Q ss_pred CCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccc
Q 013521 105 KGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGK 183 (441)
Q Consensus 105 ~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 183 (441)
....+|++..|..++|+++|+++. ++++++|++|+|+++++.+ +..++++||+|+++.|+|+++...+...|
T Consensus 54 ~~~~~y~~~~g~~~l~~~la~~~~---~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g---- 126 (375)
T 3op7_A 54 GTKLNYGWIEGSPAFKKSVSQLYT---GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLG---- 126 (375)
T ss_dssp TSCCSSCCTTCCHHHHHHHHTTSS---SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHTT----
T ss_pred cCCcCCCCCCChHHHHHHHHHHhc---cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcC----
Confidence 455679889999999999999862 5788999999999999997 67788999999999999999999999888
Q ss_pred cccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc
Q 013521 184 FLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA 258 (441)
Q Consensus 184 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~ 258 (441)
.+++.++++.++++..|++. .+++++|++++||||||.++|.+++++|+++|++||+++|+||+|..
T Consensus 127 --------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~ 198 (375)
T 3op7_A 127 --------AEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRS 198 (375)
T ss_dssp --------CEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCC
T ss_pred --------CEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 58888888765565445332 36899999999999999999999999999999999999999999998
Q ss_pred cccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHh
Q 013521 259 YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLAC 338 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 338 (441)
+.+.+ ..++... .+++++++||||.+|++|+|+||+++++++ .+.+.........+++.+.+.++.++
T Consensus 199 ~~~~~-~~~~~~~---~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (375)
T 3op7_A 199 FSELD-VPSIIEV---YDKGIAVNSLSKTYSLPGIRIGWVAANHQV--------TDILRDYRDYTMICAGVFDDLVAQLA 266 (375)
T ss_dssp CSSSC-CCCHHHH---CTTEEEEEESSSSSSCGGGCCEEEECCHHH--------HHHHTTTGGGTTSCCCHHHHHHHHHH
T ss_pred ccccC-CCchhhh---cCCEEEEeEChhhcCCcccceEEEEeCHHH--------HHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 87662 2333333 356799999999999999999999998777 45666555555566788888888888
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCC
Q 013521 339 LSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGN 416 (441)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 416 (441)
+.. ...++++.++.++++++.+.+.|++. ++.+..+.+++++|+.++ +.+..+++..+++++||.+.||+.|+. +
T Consensus 267 l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~ 343 (375)
T 3op7_A 267 LAH-YQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER--D 343 (375)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC--T
T ss_pred Hhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC--C
Confidence 863 33577888999999999999999987 788877778888999887 446678888888778999999998875 6
Q ss_pred CeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 417 EHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 417 ~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+++|++++.+.+++++++++|++++
T Consensus 344 ~~iRi~~~~~~~~i~~~l~~l~~~l 368 (375)
T 3op7_A 344 GYVRLGFACEQETLIKGLEKLSQFL 368 (375)
T ss_dssp TEEEECCCSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHH
Confidence 8999999888899999999998763
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=342.03 Aligned_cols=338 Identities=14% Similarity=0.133 Sum_probs=260.7
Q ss_pred CCCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEE--EcCCc
Q 013521 70 PDARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIF--ISDGA 144 (441)
Q Consensus 70 ~~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~--~t~G~ 144 (441)
..+++|+|++|+| +++.++.+.+++.++. .....+|++..|..++|+++++|+..... +++++|. .|.|+
T Consensus 39 ~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~-----~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g 113 (409)
T 4eu1_A 39 PAKRKVNLSIGVYRDDADQPFVLECVKQAT-----LGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGG 113 (409)
T ss_dssp CCSSCEECCCSSCCCTTSCCCCCHHHHTCC-----CCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHH
T ss_pred CCcCceeeeeeEEECCCCCEeecHHHHhcC-----ccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccc
Confidence 3467999999997 8877777888887762 15567898889999999999999842111 2278884 59999
Q ss_pred HHHHHHH----HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--------C
Q 013521 145 QSDISRL----QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--------T 212 (441)
Q Consensus 145 ~~al~~l----~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--------~ 212 (441)
++++.++ ..++++||.|++++|+|+++...++..| .+++.+++++++++..|++. .
T Consensus 114 ~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 181 (409)
T 4eu1_A 114 TGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAG------------MELTPYSYYDPATKGLNLAGMLECLDKAP 181 (409)
T ss_dssp HHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTT------------CEEEEECCEETTTTEECHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcC------------CeEEEEEeecCcCCcCcHHHHHHHHHhCC
Confidence 9988753 3456899999999999999999999998 58888888543344444332 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC---CCcccccCCCcceeEEEecCCcccC
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS---PRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~---~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
.+++++++++||||||.++|.+++++|+++|++||+++|+||+|+++.+++. +.++..+.+..+++++++||||.+|
T Consensus 182 ~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 261 (409)
T 4eu1_A 182 EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG 261 (409)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS
T ss_pred CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc
Confidence 3456666789999999999999999999999999999999999999887651 2344444234567899999999999
Q ss_pred CccceeEEE--EeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWT--VVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 290 ~~G~r~G~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~ 362 (441)
++|+|+||+ +++++.+. ..+.+.+.......+.+++.+.|.++.+++.+.. .++++++++.++++++.+.
T Consensus 262 ~~G~riG~~~~v~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (409)
T 4eu1_A 262 LYGHRCGALHISTASAEEA---KRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLV 338 (409)
T ss_dssp CGGGCCEEEEEECSSHHHH---HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCceEEEEEeCCHHHH---HHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 55443200 0013455555555566678999999988887543 2457889999999999999
Q ss_pred HHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHH
Q 013521 363 DAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRL 437 (441)
Q Consensus 363 ~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l 437 (441)
+.|+++| +.+..+.+++|+|+.++ .+++..+++++||.+.|| .||+++. +++++++++++|
T Consensus 339 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~gv~v~p~----------~Ri~~~~~~~~~i~~~~~~l 404 (409)
T 4eu1_A 339 SELKACGSVHDWSHIERQVGMMAYTGLT----REQVELLRSEYHIYMTLN----------GRAAVSGLNSTNVEYVSQAI 404 (409)
T ss_dssp HHHHHTTCCSCCHHHHHSCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHHH
T ss_pred HHHHhcCCCCCcceecCCceEEEEeCCC----HHHHHHHHHcCCEEEcCC----------CEEEEEecCHhhHHHHHHHH
Confidence 9999986 77777788999997664 466788888889999985 3888754 777899999999
Q ss_pred HhhC
Q 013521 438 KNFL 441 (441)
Q Consensus 438 ~~~l 441 (441)
++++
T Consensus 405 ~~~l 408 (409)
T 4eu1_A 405 HNVT 408 (409)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8763
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-41 Score=320.09 Aligned_cols=319 Identities=22% Similarity=0.324 Sum_probs=249.7
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
..++|+|+.+++++++++.+.+++.+.+.. ..+| +..|..++|+++|+++ ++++++|++|+|+++++.+
T Consensus 15 ~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~------~~~y-~~~~~~~lr~~la~~~----~~~~~~i~~t~G~~~~l~~ 83 (337)
T 3p1t_A 15 AAQAVCLAFNENPEAVEPRVQAAIAAAAAR------INRY-PFDAEPRVMRKLAEHF----SCPEDNLMLVRGIDECFDR 83 (337)
T ss_dssp CCCCEECSSCCCCSCCCHHHHHHHHHHGGG------TTSC-CTTHHHHHHHHHHHHH----TSCGGGEEEESHHHHHHHH
T ss_pred CCCceEeeCCCCCCCCCHHHHHHHHHhhhh------hccC-CCCchHHHHHHHHHHh----CcCHHHEEEeCCHHHHHHH
Confidence 356899999999999999999999987653 3467 4679999999999997 7888999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCCCCCccEEEEcCCCCcccc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LSTTSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~v~i~~p~NPtG~ 229 (441)
+...+ +||+|+++.|+|+++...++..| .+++.++.+++.+++++ +++..+++++++++||||||.
T Consensus 84 ~~~~~-~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~v~i~~p~nptG~ 150 (337)
T 3p1t_A 84 ISAEF-SSMRFVTAWPGFDGYRARIAVSG------------LRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQ 150 (337)
T ss_dssp HHHHS-TTSEEEEESSSCSHHHHHHTTSC------------CEEEEECBCTTSSBCHHHHTTCCTTEEEEEESSCTTTCC
T ss_pred HHHhc-CCCeEEEeCCCcHHHHHHHHHcC------------CEEEEecCCCCCCCCHHHHHhhcCCCEEEEeCCCCCCCC
Confidence 65555 99999999999999999888888 58889988754333322 333467899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~ 309 (441)
++|.+++.+ +|+++++ +|+||+|++|...... .. ...+++++++||||.+|++|+|+||++++++++
T Consensus 151 ~~~~~~l~~---l~~~~~~-~ivDea~~~~~~~~~~-~~----~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~---- 217 (337)
T 3p1t_A 151 ALSAGELDQ---LRQRAGK-LLIDETYVDYSSFRAR-GL----AYGENELVFRSFSKSYGLAGLRLGALFGPSELI---- 217 (337)
T ss_dssp CCCHHHHHH---HHHHCSE-EEEECTTGGGSSCSSS-CC----CCBTTEEEEEESSSTTCCTTTCCEEEECCHHHH----
T ss_pred CCCHHHHHH---HHHhCCc-EEEECCChhhcccccc-cc----ccCCCEEEEeeCchhccCcchheEEEEeCHHHH----
Confidence 999665555 5567786 5569999987654321 11 134678999999999999999999999988873
Q ss_pred chhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCC
Q 013521 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSS 389 (441)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 389 (441)
+.+.... ...+.+.+.|.++.+++++. .++++.++++.++++.+.+.|+++|+.+.+ +.+.|+|+..+.
T Consensus 218 ----~~l~~~~--~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~-- 286 (337)
T 3p1t_A 218 ----AAMKRKQ--WFCNVGTLDLHALEAALDND--RAREAHIAKTLAQRRRVADALRGLGYRVAS-SEANFVLVENAA-- 286 (337)
T ss_dssp ----HHHHTTS--CTTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CSSSEEEEECTT--
T ss_pred ----HHHHhhc--CCCCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCcCEECC-CCCeEEEEEcCC--
Confidence 4454332 23457888999888888752 334566677778889999999998888775 467788888763
Q ss_pred hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 390 SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 390 ~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
..++.. +++++||.+.||+.|+. ++++||++. ++++++++++.|++++
T Consensus 287 ~~~~~~-~l~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 287 GERTLR-FLRERGIQVKDAGQFGL--HHHIRISIG-REEDNDRLLAALAEYS 334 (337)
T ss_dssp THHHHH-HHHHTTEECEEGGGGTC--CSEEEEECC-CHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHCCeEEEECccCCC--CCeEEEecC-CHHHHHHHHHHHHHHh
Confidence 344444 45566999999998865 579999986 6888899999888753
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-42 Score=340.52 Aligned_cols=341 Identities=15% Similarity=0.148 Sum_probs=262.0
Q ss_pred CCCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhcc--CCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-----CCcEEE-
Q 013521 70 PDARLIRLGIGDT-TQPIPDIITSAMAEHAFALS--TVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-----GDEIFI- 140 (441)
Q Consensus 70 ~~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~--~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-----~~~I~~- 140 (441)
+.+.+|+|++|.| +...++.+.+++.++..+.. ......+|.+..|..++|+++++++. +.+ +++|++
T Consensus 47 ~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~---g~~~~~~~~~~i~~~ 123 (448)
T 3meb_A 47 TNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMF---GKDSKAAQEGRIASC 123 (448)
T ss_dssp CCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHH---CTTCHHHHTTCEEEE
T ss_pred CCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhc---CCCccccCcCcEEEE
Confidence 3456899999998 76555445555555533221 11455689888999999999999983 444 789999
Q ss_pred -cCCcHHHHHH---HHHhcCCCCEEEEeCCCchhhHhHHH----HhccccccccccCccceeEEeecCCCC-CccCCCCC
Q 013521 141 -SDGAQSDISR---LQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDLST 211 (441)
Q Consensus 141 -t~G~~~al~~---l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~ 211 (441)
|+|+++++++ +..++.+||+|++++|+|+++...++ ..| .+++.++..+++ ++..|++.
T Consensus 124 ~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G------------~~v~~~~~~~~~~~~~~d~e~ 191 (448)
T 3meb_A 124 QSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLK------------VPYKEYTYLRKDGELEIDFSN 191 (448)
T ss_dssp EESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTT------------SCCEEECCBCTTSCSSBCHHH
T ss_pred ECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCC------------CeEEEEeccccccCCCcCHHH
Confidence 9999999976 35667999999999999999999998 788 588889884333 34445432
Q ss_pred -------C-CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC---CCcccccCCCcceeEE
Q 013521 212 -------T-SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS---PRSIYEIPGAREVAIE 280 (441)
Q Consensus 212 -------~-~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~---~~~~~~~~~~~~~~i~ 280 (441)
. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++. ..++..+.+..+++++
T Consensus 192 l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (448)
T 3meb_A 192 TKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLV 271 (448)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEE
Confidence 1 3567778899999999999999999999999999999999999999887641 2233333223467899
Q ss_pred EecCCcccCCccceeEEE--Ee--------eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc----H-H
Q 013521 281 ISSFSKFAGFTGVRLGWT--VV--------PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG----F-Q 345 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~-~ 345 (441)
++||||.+|++|+|+||+ ++ +++.. ...+.+.+.......+.+++.+.|.++.+++.+.. + +
T Consensus 272 ~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~ 348 (448)
T 3meb_A 272 AQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKAL---SAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYD 348 (448)
T ss_dssp EEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHH---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred EecccccCCCccccceeeeeeeccccccccCCHHH---HHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHH
Confidence 999999999999999998 77 44310 00014555555556666788999999999998643 1 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC---C------CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCC
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSL---G------LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGN 416 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~---g------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 416 (441)
++++++++++++++.+.+.|+++ + +.+..+.+++|+|+.++ .+++..+++++||.+.||+
T Consensus 349 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~ll~~~gV~v~~G~------- 417 (448)
T 3meb_A 349 NVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT----PEHVDYLKEKWSIYLVKAG------- 417 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC----HHHHHHHHHHHCEEECSGG-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC----HHHHHHHHHhCCEEEeCCC-------
Confidence 57899999999999999999987 3 55556678999998874 4778888888899999985
Q ss_pred CeEEEEeec-CHHHHHHHHHHHHhhC
Q 013521 417 EHIRVSAFG-HREYISEACRRLKNFL 441 (441)
Q Consensus 417 ~~iRls~~~-~~~~~~~~l~~l~~~l 441 (441)
.|||++. +++++++++++|++++
T Consensus 418 --gRis~a~~~~~~i~~~~~~l~~~l 441 (448)
T 3meb_A 418 --GRMSMCGLTESNCDYVAEAIHDAV 441 (448)
T ss_dssp --GEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred --cEEEEecCCHHHHHHHHHHHHHHH
Confidence 2999976 7888999999998763
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=338.46 Aligned_cols=349 Identities=21% Similarity=0.321 Sum_probs=258.7
Q ss_pred CCeE-EeCCCCCCCCCcHHHHHHHHHHHhhccCC-----------CCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCc
Q 013521 72 ARLI-RLGIGDTTQPIPDIITSAMAEHAFALSTV-----------KGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDE 137 (441)
Q Consensus 72 ~~~i-~l~~g~~~~~~~~~~~~al~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~ 137 (441)
+++| +|+.|.|+.+ +.+.+++.+++.+.... ....+|++..|..++|+++|+|+.+ ++++++++
T Consensus 31 ~~~i~~l~~g~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~ 108 (444)
T 3if2_A 31 DQPVNMLGGGNPAKI--DAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSEN 108 (444)
T ss_dssp SSCCEECSCCCCCCC--HHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG
T ss_pred chhhhccCCCCCCcc--cchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHH
Confidence 5789 9999998763 44444554444433211 1135798889999999999999965 56788999
Q ss_pred EEEcCCcHHHHHH-HHHhcCCCC--------------EEEEe-CCCchhhHhHHHHhccccccccccCccceeEEeecCC
Q 013521 138 IFISDGAQSDISR-LQMLLGSNV--------------TVAVQ-DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP 201 (441)
Q Consensus 138 I~~t~G~~~al~~-l~~l~~~gd--------------~Vlv~-~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~ 201 (441)
|++|+|+++++++ +..++++|| .|+++ +|+|+++...+...+. +...+ ..++.++.+.
T Consensus 109 i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~ 182 (444)
T 3if2_A 109 IALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQH---FAAVL---PHIDEVTHDG 182 (444)
T ss_dssp EEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCC---EEECC---CEEEEEEETT
T ss_pred EEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccch---hhccC---ceEEeccccc
Confidence 9999999999998 567778887 78775 9999998764321110 00000 3677777764
Q ss_pred CCC---ccCC---CCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc
Q 013521 202 ENN---FFPD---LST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE 270 (441)
Q Consensus 202 ~~~---~~~~---~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~ 270 (441)
+++ +..+ +++ .+++++|++++||||||.++|.+++++|+++|++||++||+||+|+.+..........
T Consensus 183 ~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~- 261 (444)
T 3if2_A 183 EEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAH- 261 (444)
T ss_dssp EEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC-
T ss_pred ccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccccc-
Confidence 211 2223 221 3678999999999999999999999999999999999999999998643221111111
Q ss_pred cCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHH
Q 013521 271 IPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRT 349 (441)
Q Consensus 271 ~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~ 349 (441)
....+++++++||||. +++|+|+||+++++++ .+.+.........+++.+.|.++.+++.+..+ .+.++
T Consensus 262 -~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 331 (444)
T 3if2_A 262 -LNWDNNTILCFSLSKI-GLPGMRTGIIVADAKV--------IEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDN 331 (444)
T ss_dssp -CCCCTTEEEEEESTTT-TCGGGCCEEEECCHHH--------HHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHH
T ss_pred -ccCCCCEEEEechhhc-cCCCCceEEEEECHHH--------HHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHH
Confidence 1235778999999997 6799999999998887 45666665555566788999999888886544 44454
Q ss_pred -HHHHHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCC--------
Q 013521 350 -VIDYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPG-------- 414 (441)
Q Consensus 350 -~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~-------- 414 (441)
+++.++++++.+.+.|.+. ++.+..+.+|+|+|++++. .+..++...+. ++||.+.||+.|...
T Consensus 332 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~~~~ 410 (444)
T 3if2_A 332 EIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLK-AKGTLIVPSEYFFPGVDVSDYQH 410 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHHH-HTTEECEEGGGSCTTCCCTTCSG
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHHH-HCCeEEecchhhcCCCCCccccc
Confidence 7888999999998888763 5677777789999999973 46667777664 569999999998543
Q ss_pred CCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 415 GNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 415 ~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
..++|||+++.+++++++++++|+++
T Consensus 411 ~~~~iRis~~~~~e~i~~~l~~l~~~ 436 (444)
T 3if2_A 411 AHECIRMSIAADEQTLIDGIKVIGEV 436 (444)
T ss_dssp GGSEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHHH
Confidence 13689999977999999999999875
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-41 Score=321.47 Aligned_cols=316 Identities=17% Similarity=0.280 Sum_probs=250.5
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQ 152 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~ 152 (441)
++++|+.|.++++.|+.+.+++.+.+.. ....+|+. .+..++|+++|+++.+. .+++++|++|+|+++++.++.
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~-~~~~~lr~~la~~~~~~-~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNS----DALRIYYD-SPDEELIEKILSYLDTD-FLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCG----GGGGSCCC-SSCHHHHHHHHHHHTCS-SCCGGGEEEESSHHHHHHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhh----hhhhcCCC-CchHHHHHHHHHHcCCC-CCCHHHEEEcCChHHHHHHHH
Confidence 5899999999888899999999987742 23456754 47999999999998322 378899999999999999865
Q ss_pred HhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCC
Q 013521 153 MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 153 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~ 232 (441)
..+ ||+|+++ |+|+++...++..| .+++.++.+.+ +..+++..+++++|++++||||||.++|
T Consensus 94 ~~~--gd~Vl~~-p~y~~~~~~~~~~g------------~~~~~v~~~~~--~~~d~~~l~~~~~v~l~~p~nptG~~~~ 156 (335)
T 1uu1_A 94 LMF--DRSVFFP-PTYSCYRIFAKAVG------------AKFLEVPLTKD--LRIPEVNVGEGDVVFIPNPNNPTGHVFE 156 (335)
T ss_dssp HHS--SEEEECS-SSCHHHHHHHHHHT------------CEEEECCCCTT--SCCCCCCCCTTEEEEEESSCTTTCCCCC
T ss_pred HHh--CCcEEEC-CCcHHHHHHHHHcC------------CeEEEeccCCC--CCCCHHHcCCCCEEEEeCCCCCCCCCCC
Confidence 555 8999999 99999999988888 58888888643 3334443367899999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchh
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPV 312 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~ 312 (441)
.+++++|+++| | ++|+||+|.++... ..... ++ ..+++++++||||.+|++|+|+||+++++++
T Consensus 157 ~~~l~~l~~~~---~-~li~De~~~~~~~~-~~~~~--~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~-------- 220 (335)
T 1uu1_A 157 REEIERILKTG---A-FVALDEAYYEFHGE-SYVDF--LK-KYENLAVIRTFSKAFSLAAQRVGYVVASEKF-------- 220 (335)
T ss_dssp HHHHHHHHHTT---C-EEEEECTTHHHHCC-CCGGG--GG-TCSSEEEEEESTTTTTCGGGCCEEEEECHHH--------
T ss_pred HHHHHHHHHhC---C-EEEEECcchhhcch-hHHHH--hh-hCCCEEEEecchhhcCCcccCeEEEEeCHHH--------
Confidence 99888888877 7 89999999987643 11221 22 2467899999999999999999999998776
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHH
Q 013521 313 IKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWD 392 (441)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (441)
.+.+..... ..+++.+.|.++.+++++ .+++++.+++++++++.+.+.|+++|+.+.+ .+++|+|++++..+..+
T Consensus 221 ~~~l~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~ 295 (335)
T 1uu1_A 221 IDAYNRVRL--PFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITD-SRGNFVFVFMEKEEKER 295 (335)
T ss_dssp HHHHHHHSC--TTCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CCSSEEEEECCTHHHHH
T ss_pred HHHHHHhcC--CCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCcEEcC-CCCeEEEEECCCCCHHH
Confidence 355554332 246889999999999975 3567889999999999999999888877654 57889999997533456
Q ss_pred HHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 393 VFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 393 ~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+...+++ +||.+.| .++++||++. +++++++++++|++++
T Consensus 296 ~~~~l~~-~gi~v~~-------~~~~iRis~~-~~~~i~~~~~~l~~~~ 335 (335)
T 1uu1_A 296 LLEHLRT-KNVAVRS-------FREGVRITIG-KREENDMILRELEVFK 335 (335)
T ss_dssp HHHHHHH-HTEEEEE-------ETTEEEEECC-CHHHHHHHHHHHHCC-
T ss_pred HHHHHHH-CCEEEEE-------CCCeEEEEeC-CHHHHHHHHHHHHhhC
Confidence 6677665 5999998 2468999985 4678999999998764
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=335.75 Aligned_cols=336 Identities=17% Similarity=0.210 Sum_probs=257.8
Q ss_pred CCeEEeCCCCC---CC--CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEE--cC
Q 013521 72 ARLIRLGIGDT---TQ--PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFI--SD 142 (441)
Q Consensus 72 ~~~i~l~~g~~---~~--~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~--t~ 142 (441)
+++|+|+.|.+ +. ++++.+.+++.+.+.. ...++|++..|..++|+++++++.+..+ +++++|++ |+
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~ 101 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN----ETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTP 101 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCc----ccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecc
Confidence 46899999983 32 5668899999887764 2455798888999999999999854222 46899998 99
Q ss_pred CcHHHHHHH-HHh--cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-------C
Q 013521 143 GAQSDISRL-QML--LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-------T 212 (441)
Q Consensus 143 G~~~al~~l-~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-------~ 212 (441)
|++++++++ ..+ +.+||+|+++.|+|+++...++..| .+++.++.++++++..+++. .
T Consensus 102 g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 169 (396)
T 2q7w_A 102 GGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAG------------LEVREYAYYDAENHTLDFDALINSLNEA 169 (396)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTT------------CEEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcC------------CceEEEecccCCCCCcCHHHHHHHHHhC
Confidence 999999974 322 4799999999999999999999888 58888888532233333221 1
Q ss_pred -CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
++++++++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ ...++..+....+++++++||||.+|
T Consensus 170 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 249 (396)
T 2q7w_A 170 QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFG 249 (396)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccc
Confidence 246778889999999999999999999999999999999999999987753 23344444323467899999999999
Q ss_pred CccceeEEEEe---eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC----c-HHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTVV---PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD----G-FQALRTVIDYYKENAKII 361 (441)
Q Consensus 290 ~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~-~~~~~~~~~~~~~~~~~l 361 (441)
++|+|+||+++ +++.+. .+.+.+.......+.+++.+.|.++.+++++. . .++++++++.++++++.+
T Consensus 250 ~~G~riG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 325 (396)
T 2q7w_A 250 LYNERVGACTLVAADSETVD----RAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLF 325 (396)
T ss_dssp CGGGCCEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHH
T ss_pred ccccccceEEEEcCCHHHHH----HHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 332210 01333443334455556899999999999854 1 257888999999999999
Q ss_pred HHHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHH
Q 013521 362 VDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRR 436 (441)
Q Consensus 362 ~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~ 436 (441)
.+.|++++ +++..+.+|+|+|++++ .+.+..+++++||.+.|| +||++.. +++++++++++
T Consensus 326 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gv~v~~~----------~Ris~~~~~~e~i~~~~~~ 391 (396)
T 2q7w_A 326 VNTLQEKGANRDFSFIIKQNGMFSFSGLT----KEQVLRLREEFGVYAVAS----------GRVNVAGMTPDNMAPLCEA 391 (396)
T ss_dssp HHHHHHTTCCSCCTHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHH
T ss_pred HHHHHhcCCCCCcceecCCCceEEEecCC----HHHHHHHHHhcCeeecCC----------ceEEEeecCHHHHHHHHHH
Confidence 99999886 77766778999998774 245677777779999874 6999865 88999999999
Q ss_pred HHhhC
Q 013521 437 LKNFL 441 (441)
Q Consensus 437 l~~~l 441 (441)
|++++
T Consensus 392 l~~~l 396 (396)
T 2q7w_A 392 IVAVL 396 (396)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99875
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=333.90 Aligned_cols=339 Identities=17% Similarity=0.149 Sum_probs=264.5
Q ss_pred CCCCeEEeCCCCC-C----CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEE--
Q 013521 70 PDARLIRLGIGDT-T----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFI-- 140 (441)
Q Consensus 70 ~~~~~i~l~~g~~-~----~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~-- 140 (441)
.++++++|+.|.+ + .++++.+.+++.+.+.. .....+|++..|..++|+++++++.+..+ +++++|++
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~---~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 104 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN---SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQ 104 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC---TTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhC---hhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEE
Confidence 3467999999985 2 24568889998887632 13456798888999999999999954222 47899999
Q ss_pred cCCcHHHHHHH---HHhcCCC-----CEEEEeCCCchhhHhHHHHhccccccccccCccce-eEEeecCCCCCccCCCCC
Q 013521 141 SDGAQSDISRL---QMLLGSN-----VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN-IVYMNCRPENNFFPDLST 211 (441)
Q Consensus 141 t~G~~~al~~l---~~l~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~-v~~v~~~~~~~~~~~~~~ 211 (441)
|+|+++++.++ ..++++| |+|+++.|+|+++...+...| .+ ++.++.+.++++..+++.
T Consensus 105 t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~ 172 (412)
T 1ajs_A 105 SLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAG------------FKDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTT------------CSCEEEEECEETTTTEECHHH
T ss_pred CCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcC------------CceeEEEeeecCCCCccCHHH
Confidence 99999999974 3456899 999999999999999999888 57 888887532333334321
Q ss_pred --------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC---CCCcccccCCCcceeEE
Q 013521 212 --------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP---SPRSIYEIPGAREVAIE 280 (441)
Q Consensus 212 --------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~---~~~~~~~~~~~~~~~i~ 280 (441)
.++++++++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ .+.++..+...++++++
T Consensus 173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (412)
T 1ajs_A 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFC 252 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEE
Confidence 1366788889999999999999999999999999999999999999988764 33345444333577899
Q ss_pred EecCCcccCCccceeEEEEe---eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHH
Q 013521 281 ISSFSKFAGFTGVRLGWTVV---PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVID 352 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~ 352 (441)
+.||||.+|++|+|+||+++ +++.+. .+.+.+.......+.+++.+.|.++.+++++.. .++++++++
T Consensus 253 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1ajs_A 253 AQSFSKNFGLYNERVGNLTVVAKEPDSIL----RVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMAD 328 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EEecccccCCCCcceEEEEEecCCHHHHH----HHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence 99999999988999999999 665310 012334443444555568899999999997543 247889999
Q ss_pred HHHHHHHHHHHHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CH
Q 013521 353 YYKENAKIIVDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HR 427 (441)
Q Consensus 353 ~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~ 427 (441)
+++++++.+.+.|++++ +.+..+.+|+|+|++++ .+++..+++++||.+.|+ +||++.. ++
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gv~v~~~----------~Ris~~~~~~ 394 (412)
T 1ajs_A 329 RILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN----PKQVEYLINQKHIYLLPS----------GRINMCGLTT 394 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC----HHHHHHHHHTTCEECCTT----------SEEEGGGCCT
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC----HHHHHHHHHhCCEEecCC----------cEEEeeeCCH
Confidence 99999999999999876 77766778999998774 467777787889999873 6999874 88
Q ss_pred HHHHHHHHHHHhhC
Q 013521 428 EYISEACRRLKNFL 441 (441)
Q Consensus 428 ~~~~~~l~~l~~~l 441 (441)
+++++++++|++++
T Consensus 395 ~~i~~~~~~l~~~l 408 (412)
T 1ajs_A 395 KNLDYVATSIHEAV 408 (412)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=334.48 Aligned_cols=335 Identities=15% Similarity=0.171 Sum_probs=257.9
Q ss_pred CCCeEEeCCCCC-CC----CCcHHHHHHHHH-HHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEE--
Q 013521 71 DARLIRLGIGDT-TQ----PIPDIITSAMAE-HAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFI-- 140 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~----~~~~~~~~al~~-~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~-- 140 (441)
+.++|+|+.|.+ +. ++++.+.+++.+ .+.. ....+|++..|..++|+++++++.+..+ +++++|++
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~ 103 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS----SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQ 103 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc----ccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEe
Confidence 467899999986 33 467888999888 7652 3455798888999999999999964333 56899999
Q ss_pred cCCcHHHHHHH---HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeec-CCCCCccCCCCC-----
Q 013521 141 SDGAQSDISRL---QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNC-RPENNFFPDLST----- 211 (441)
Q Consensus 141 t~G~~~al~~l---~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~~~----- 211 (441)
|+|+++++.++ ..++++||+|++++|+|+++...++..| .+++.++. +++ ++..+++.
T Consensus 104 t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~-~~~~d~~~l~~~l 170 (412)
T 1yaa_A 104 SLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQG------------LKTATYPYWANE-TKSLDLNGFLNAI 170 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTT------------CCEEEEECEETT-TTEECHHHHHHHH
T ss_pred ccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcC------------ceEEEEeeecCC-CCccCHHHHHHHH
Confidence 99999999874 4556899999999999999999998888 58888887 432 33333321
Q ss_pred --CCCccEEEE-cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC---CCCcccccCCCcc---eeEEEe
Q 013521 212 --TSRTDIIFF-CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP---SPRSIYEIPGARE---VAIEIS 282 (441)
Q Consensus 212 --~~~~~~v~i-~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~---~~~~~~~~~~~~~---~~i~i~ 282 (441)
.+..+++++ ++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ .+.++..+....+ ++++++
T Consensus 171 ~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 250 (412)
T 1yaa_A 171 QKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQ 250 (412)
T ss_dssp HHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEE
T ss_pred HhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEe
Confidence 112344554 8999999999999999999999999999999999999887764 2334433322223 789999
Q ss_pred cCCcccCCccceeEEEE--e-----eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHH
Q 013521 283 SFSKFAGFTGVRLGWTV--V-----PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTV 350 (441)
Q Consensus 283 S~SK~~~~~G~r~G~l~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~ 350 (441)
||||.+|++|+|+||++ + +++.+. .+.+.+.......+.+++.+.|.++.+++++.. .++++++
T Consensus 251 s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 326 (412)
T 1yaa_A 251 SFAKNAGMYGERVGCFHLALTKQAQNKTIKP----AVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTM 326 (412)
T ss_dssp ECTTTSCCGGGCEEEEEEECCSCTTHHHHHH----HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCcCCcceEEEEEecCCCCCHHHHH----HHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999997799999998 7 444100 013455554445556668899999999997543 2578999
Q ss_pred HHHHHHHHHHHHHHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-
Q 013521 351 IDYYKENAKIIVDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG- 425 (441)
Q Consensus 351 ~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~- 425 (441)
+++++++++.+.+.|++++ +++..+.+|+|+|+.++ . +.+..+++++||.+.| ++||++..
T Consensus 327 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~gi~v~~----------~~Ris~~~~ 392 (412)
T 1yaa_A 327 SSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT---P-QMVKRLEETHAVYLVA----------SGRASIAGL 392 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC---H-HHHHHHHHHHCEECCT----------TSEEEGGGC
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC---H-HHHHHHHHhCCEEecc----------CcEEEEccC
Confidence 9999999999999999876 77777778899998663 3 3457777777999987 47999865
Q ss_pred CHHHHHHHHHHHHhh
Q 013521 426 HREYISEACRRLKNF 440 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~ 440 (441)
+++++++++++|+++
T Consensus 393 ~~~~i~~~~~~l~~~ 407 (412)
T 1yaa_A 393 NQGNVEYVAKAIDEV 407 (412)
T ss_dssp CTTTHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHH
Confidence 889999999999875
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-42 Score=338.10 Aligned_cols=326 Identities=17% Similarity=0.201 Sum_probs=254.9
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCc-C---cHHHHHHHHHHHhh--hCCCCCCcEEEcCCcH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQ-G---NMALRTAIADKFYK--DMGIEGDEIFISDGAQ 145 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~-g---~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~ 145 (441)
..+|+|+.|+|++++|+.+.+++.+++.... ....+|++.. | ..+||++||+|+.+ +..+++++|++|+|++
T Consensus 56 ~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~--~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~ 133 (427)
T 2hox_A 56 GCSADVASGDGLFLEEYWKQHKEASAVLVSP--WHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVT 133 (427)
T ss_dssp TCCEECCSCCCGGGHHHHTTSHHHHCEEECT--TTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHH
T ss_pred CceEEecCcCCCCCCCHHHHHhHHhhhhcCC--cccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHH
Confidence 4689999999998877888888887663211 1223488877 8 99999999999975 2346899999999999
Q ss_pred HHHHH-HHHh--------cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCcc
Q 013521 146 SDISR-LQML--------LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTD 216 (441)
Q Consensus 146 ~al~~-l~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~ 216 (441)
+++.+ +..+ +++||.|++++|+|+++...++..|. +++....+.+ .+...+ .++++
T Consensus 134 ~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~------------~~~~~~~d~~-~l~~~~--~~~~k 198 (427)
T 2hox_A 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDK------------KGYVWAGNAA-NYVNVS--NPEQY 198 (427)
T ss_dssp HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCB------------TTEEEEEEGG-GGTTCS--CGGGE
T ss_pred HHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCC------------eeeeecCCHH-HHHHhh--cCCce
Confidence 99998 5777 89999999999999999999999884 4444444332 221111 24689
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
+|+++|||||||.+++ +.+ + ++.+|.|+.|.+ + +.++..++ .+++|+++||||.+|++|+|+|
T Consensus 199 ~v~l~~p~NPtG~~~~-~~l-------~--~~~~i~d~~~~~----~-~~s~~~~~--~~~~i~~~S~SK~~g~~G~RiG 261 (427)
T 2hox_A 199 IEMVTSPNNPEGLLRH-AVI-------K--GCKSIYDMVYYW----P-HYTPIKYK--ADEDILLFTMSKFTGHSGSRFG 261 (427)
T ss_dssp EEEEESSCTTTCCCCC-CSS-------T--TCEEEEECTTCS----T-TTSCCCSC--BCCSEEEEEHHHHTSCGGGCCE
T ss_pred EEEEcCCCCCcccccH-HHH-------c--CCCEEEeecccC----C-CCCccccC--CCceEEEEeChhcCCCCCceEE
Confidence 9999999999999999 422 2 566788877643 1 33444443 5788999999999999999999
Q ss_pred EEEee-ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC---------c-HHHHHHHHHHHHHHHHHHHHHH
Q 013521 297 WTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD---------G-FQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 297 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---------~-~~~~~~~~~~~~~~~~~l~~~L 365 (441)
|++++ +++ ++.+.........+++.++|.++.++|.+. + .+++++.++.++++++.+.+.|
T Consensus 262 ~~~~~~~~l--------~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (427)
T 2hox_A 262 WALIKDESV--------YNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALL 333 (427)
T ss_dssp EEEECCHHH--------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCHHH--------HHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 555 566777666666678999999988888742 1 2567888999999999999999
Q ss_pred HhC-CCee--------------eCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHH
Q 013521 366 QSL-GLKV--------------NGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYI 430 (441)
Q Consensus 366 ~~~-g~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~ 430 (441)
+++ |+.+ ..|.+|+|+|++++. ++.+++..+++++||.++||+.|+. ++++||||++.+++++
T Consensus 334 ~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~gI~v~pg~~f~~-~~~~~Ris~~~~~e~l 411 (427)
T 2hox_A 334 DQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIKTQDDF 411 (427)
T ss_dssp TTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSSCHHHH
T ss_pred HhCcCccccccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHCCEEEcCCCccCC-CCCEEEEEecCCHHHH
Confidence 987 6654 234569999999975 4456778888778999999999976 6789999998889999
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
++++++|++++
T Consensus 412 ~~~l~~l~~~~ 422 (427)
T 2hox_A 412 DQLMYYLKDMV 422 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998763
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-40 Score=318.38 Aligned_cols=323 Identities=18% Similarity=0.251 Sum_probs=256.4
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHHH-
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~~- 150 (441)
.|+|+.|++++++++.+.+++.+.+.+.. ....+|++..+ .++|+++|+++.+ ++++++++|++|+|+++++.+
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~ 108 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIA--TELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQL 108 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHG--GGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcc--cccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHH
Confidence 39999999988899999999999887532 23457866555 7999999999875 466788999999999999987
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC-CccEEEEcCCC
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS-RTDIIFFCSPN 224 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~-~~~~v~i~~p~ 224 (441)
+..++++||+|++++|+|+++...+...| .+++.++.+.+ +..+++. .+ ++++|++++||
T Consensus 109 ~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g------------~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~ 174 (369)
T 3cq5_A 109 LQAFGGPGRTALGFQPSYSMHPILAKGTH------------TEFIAVSRGAD--FRIDMDVALEEIRAKQPDIVFVTTPN 174 (369)
T ss_dssp HHHHCSTTCEEEEEESSCTHHHHHHHHTT------------CEEEEEECCTT--SSCCHHHHHHHHHHHCCSEEEEESSC
T ss_pred HHHhcCCCCEEEEcCCChHHHHHHHHHcC------------CEEEEecCCcC--CCCCHHHHHHHhhccCCCEEEEeCCC
Confidence 67778999999999999999999998888 58888887543 3333322 13 78999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc-eeEEEecCCcccCCccceeEEEEeecc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE-VAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~-~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
||||.++|.+++++|++ .+++++|+||+|+++..+ .+...+.+..+ ++++++||||.+|++|+|+||++++++
T Consensus 175 nptG~~~~~~~l~~l~~---~~~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~ 248 (369)
T 3cq5_A 175 NPTGDVTSLDDVERIIN---VAPGIVIVDEAYAEFSPS---PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPA 248 (369)
T ss_dssp TTTCCCCCHHHHHHHHH---HCSSEEEEECTTGGGCCS---CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTH
T ss_pred CCCCCCCCHHHHHHHHH---hCCCEEEEECCchhhcCC---cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHH
Confidence 99999999666666655 556999999999987653 22333322234 789999999999989999999999987
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWV 383 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 383 (441)
+ .+.+..... ..+++.+.|.++.+++++ .+++++.+++++++++.+.+.|++.|+.+.+ ..|+|+|+
T Consensus 249 ~--------~~~l~~~~~--~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~ 315 (369)
T 3cq5_A 249 F--------IDAVMLVRL--PYHLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEELGYAVVP-SESNFVFF 315 (369)
T ss_dssp H--------HHHHHTTSC--TTCSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHHTCEEEC-CSSSEEEE
T ss_pred H--------HHHHHHcCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEECC-CCCeEEEE
Confidence 6 344543322 235889999998888875 3567889999999999999999888888874 57889999
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+++ .+..++.+.+. ++||.+.||. .++++||++. +++++++++++|+++
T Consensus 316 ~~~-~~~~~l~~~l~-~~gi~v~~~~-----~~~~iRis~~-~~~~i~~~~~~l~~~ 364 (369)
T 3cq5_A 316 GDF-SDQHAAWQAFL-DRGVLIRDVG-----IAGHLRTTIG-VPEENDAFLDAAAEI 364 (369)
T ss_dssp ECC-SSHHHHHHHHH-HTTEECBCCS-----CTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred ECC-CCHHHHHHHHH-HCCEEEEECC-----CCCeEEEEeC-CHHHHHHHHHHHHHH
Confidence 987 35566777765 5699999981 3579999987 789999999999875
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=323.94 Aligned_cols=338 Identities=13% Similarity=0.114 Sum_probs=247.5
Q ss_pred CeEEeCCCCC---C--CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-hCCCCCCcEEEcCCcHH
Q 013521 73 RLIRLGIGDT---T--QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-DMGIEGDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~---~--~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~~~I~~t~G~~~ 146 (441)
+.|||++|.+ + .+..+.|.+|.++.+.. +..+.|.|..|.++||+++++++.+ .........+.|.|++.
T Consensus 45 ~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~----~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtg 120 (420)
T 4h51_A 45 PKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM----NLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTG 120 (420)
T ss_dssp SCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT----TCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHH
T ss_pred CCEEeecCcccCCCCCCCCCHHHHHHHHHHhcC----CCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchH
Confidence 4799999943 2 23457788887776653 4445799999999999999999854 21112224455888888
Q ss_pred HHHH-H----HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC--------CCC
Q 013521 147 DISR-L----QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS--------TTS 213 (441)
Q Consensus 147 al~~-l----~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~--------~~~ 213 (441)
|+.. + ..+++|||+|++++|+|++|..+++..|.+ .+...+..+.+.+..+.+ ..+
T Consensus 121 a~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~-----------~V~~~~~~~~~~~~~d~~~~~~~l~~~~~ 189 (420)
T 4h51_A 121 AVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWK-----------NICTYAYYDPKTVSLNFEGMKKDILAAPD 189 (420)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCC-----------CEEEEECEEGGGTEECHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCe-----------EEEeeccccccccCCCHHHHHHHHhccCC
Confidence 7754 2 234579999999999999999999999942 233333332233333321 135
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC---CCcccccCCCcceeEEEecCCcccCC
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS---PRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~---~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
+++++++++||||||.+++.+++++|+++|+++++++|+||+|.+|.+++. +..+....+..++++++.||||.|++
T Consensus 190 ~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~ 269 (420)
T 4h51_A 190 GSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGL 269 (420)
T ss_dssp SCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCC
T ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccccc
Confidence 677878889999999999999999999999999999999999999988653 22222222334678999999999999
Q ss_pred ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-----QALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~L 365 (441)
+|+|+||++++.+.... ..++..++.......+.+++...|.++...+.+... .+++.++++|+++|+.+.+.|
T Consensus 270 ~G~RvG~~~~~~~~~~~-~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L 348 (420)
T 4h51_A 270 YSERAGTLSLLLKDKTK-RADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDEL 348 (420)
T ss_dssp GGGCEEEEEEECSCHHH-HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEecccCHHH-HHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998776311 011122333344556677888999988888876432 467889999999999999999
Q ss_pred HhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 366 QSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 366 ~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
++.| +.+..+++|+|.|+.++ .+.++ +|+++||++.|+. |||+++ ++++++.++++|.++
T Consensus 349 ~~~g~~~~~~~i~~q~GmF~~~gls----~e~v~-~L~e~~Vy~~~~g----------Ris~Agl~~~ni~~~a~aI~~v 413 (420)
T 4h51_A 349 LRLQTPGSWEHVINQIGMFSFLGLS----KAQCE-YCQNHNIFITVSG----------RANMAGLTHETALMLAQTINDA 413 (420)
T ss_dssp HHTTCSSCCTHHHHCCSSEEECCCC----HHHHH-HHHHTTEECCTTC----------EEEGGGCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCeecCCCceEEecCcC----HHHHH-HHHhCCEEEcCCC----------EEEeccCCHHHHHHHHHHHHHH
Confidence 9875 44455678999998764 34454 4567799998752 999966 899999999999876
Q ss_pred C
Q 013521 441 L 441 (441)
Q Consensus 441 l 441 (441)
+
T Consensus 414 v 414 (420)
T 4h51_A 414 V 414 (420)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=326.60 Aligned_cols=335 Identities=15% Similarity=0.165 Sum_probs=255.6
Q ss_pred CCCeEEeCCCCC---C--CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEE--cCC
Q 013521 71 DARLIRLGIGDT---T--QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFI--SDG 143 (441)
Q Consensus 71 ~~~~i~l~~g~~---~--~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~--t~G 143 (441)
++++++|+.|.+ + .++++.+.+++.+.+.. ....+|++..|..++|+++|+++.. .++++++|++ |+|
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~-~~~~~~~v~~~~~~g 99 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET----ETTKTYAGLSGEPEFQKAMGELILG-DGLKSETTATLATVG 99 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCSSCCHHHHHHHHHHHHG-GGCCGGGEEEEEEEH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCC----cccCCCCCCCCcHHHHHHHHHHHhC-CCCCcccEEEEecCC
Confidence 457899999985 2 25678999999888764 3456798888999999999999843 2337899999 999
Q ss_pred cHHHHHHH-HHh--cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-------C-
Q 013521 144 AQSDISRL-QML--LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-------T- 212 (441)
Q Consensus 144 ~~~al~~l-~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-------~- 212 (441)
+++++.++ ..+ +.+||+|+++.|+|+++...+...| .+++.++.+.++++..+++. .
T Consensus 100 ~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 167 (394)
T 2ay1_A 100 GTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMG------------LPVQTYRYFDAETRGVDFEGMKADLAAAK 167 (394)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHT------------CCEEEEECEETTTTEECHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcC------------CceEEEecccccCCccCHHHHHHHHHhCC
Confidence 99999974 333 3599999999999999999999888 57888888532233333221 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
++++++++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ ...++..+....+++++++||||.+|+
T Consensus 168 ~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 247 (394)
T 2ay1_A 168 KGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGI 247 (394)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTC
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcC
Confidence 235667778999999999999999999999999999999999999887652 122333332223568999999999999
Q ss_pred ccceeEEEEe---eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVV---PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 291 ~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~ 362 (441)
+|+|+||+++ +++++. .+.+.+.......+.+++.+.|.++.+++++.. .+++++++++++++++.+.
T Consensus 248 ~G~riG~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 323 (394)
T 2ay1_A 248 YRERTGCLLALCADAATRE----LAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLA 323 (394)
T ss_dssp GGGCEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccceEEEEeCCHHHHH----HHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 444320 012223323334455568899998888887531 2578899999999999999
Q ss_pred HHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHH
Q 013521 363 DAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRL 437 (441)
Q Consensus 363 ~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l 437 (441)
+.|++++ +.+..+.+|+|+|++++ . +.+..+++++||.+.|| +||++.. +++++++++++|
T Consensus 324 ~~L~~~~~~~~~~~~~~~~g~~~~~~~~---~-~~~~~~l~~~gi~v~~~----------~Ris~~~~~~~~i~~~~~~l 389 (394)
T 2ay1_A 324 GELRDLSGSDRFGFVAEHRGMFSRLGAT---P-EQVKRIKEEFGIYMVGD----------SRINIAGLNDNTIPILARAI 389 (394)
T ss_dssp HHHHHHHTSSTTTHHHHCCSSEEECCCC---H-HHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHHH
T ss_pred HHHHhcCCCCCeeEEcCCceEEEeeCCC---H-HHHHHHHHhCCEEecCC----------CeEEeecCCHhhHHHHHHHH
Confidence 9998874 77766678999998875 2 45567777779999874 6999864 889999999999
Q ss_pred Hhh
Q 013521 438 KNF 440 (441)
Q Consensus 438 ~~~ 440 (441)
+++
T Consensus 390 ~~~ 392 (394)
T 2ay1_A 390 IEV 392 (394)
T ss_dssp HHH
T ss_pred HHc
Confidence 875
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=312.69 Aligned_cols=335 Identities=14% Similarity=0.164 Sum_probs=254.7
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+++++|+.|.+ ++++++.+.+++.+.+.... .....|.+..|..++++++++++.+.++. ++|++|+|+++++.+
T Consensus 43 ~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~v~~~~ggt~a~~~ 118 (398)
T 3a2b_A 43 RRVLMFGSNSYLGLTTDTRIIKAAQDALEKYG--TGCAGSRFLNGTLDIHVELEEKLSAYVGK--EAAILFSTGFQSNLG 118 (398)
T ss_dssp EEEEECSCSCTTCGGGCHHHHHHHHHHHHHHC--SCCCSBTTTTCCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHH
T ss_pred ceEEEeecccccCCCCCHHHHHHHHHHHHHcC--CCCCCcCcccCCcHHHHHHHHHHHHHhCC--CcEEEECCHHHHHHH
Confidence 46899999987 66678999999999887643 23445666678888999999888775554 699999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC--CCccEEEEcCCCCcc
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT--SRTDIIFFCSPNNPT 227 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--~~~~~v~i~~p~NPt 227 (441)
+..++++||.|+++.|+|+.+...+...| .+++.++..+.+.+...+... .++++|++++|+|||
T Consensus 119 ~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~npt 186 (398)
T 3a2b_A 119 PLSCLMGRNDYILLDERDHASIIDGSRLSF------------SKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSME 186 (398)
T ss_dssp HHHHSSCTTCEEEEETTCCHHHHHHHHHSS------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTT
T ss_pred HHHHHhCCCCEEEECCccCHHHHHHHHHcC------------CceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCC
Confidence 66778999999999999999999999888 578888762111110001111 178999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcce-eEEEecCCcccCCccceeEEEEeeccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV-AIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~-~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
|.+++ +++|+++|++||+++|+||+|+++.++..+.++....+..++ +++++||||.++++| ||+++++++
T Consensus 187 G~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~-- 258 (398)
T 3a2b_A 187 GDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADV-- 258 (398)
T ss_dssp CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHH--
T ss_pred CCccC---HHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCHHH--
Confidence 99998 899999999999999999999987664322333332222334 699999999999778 999998877
Q ss_pred cCCchhHHHHHHH-HhhhcCCCcHHHHH-HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEE
Q 013521 307 SNGYPVIKDFNRI-VCTCFNGASNIVQA-GGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQ 384 (441)
Q Consensus 307 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 384 (441)
++.+... ......+.+.+.|. ++.++++. .+++++++++++++++.+.+.|+++|+++.++ .|+++|+.
T Consensus 259 ------~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~g~~~~~~ 329 (398)
T 3a2b_A 259 ------IDFLKHNARSVMFSASMTPASVASTLKALEI--IQNEPEHIEKLWKNTDYAKAQLLDHGFDLGAT-ESPILPIF 329 (398)
T ss_dssp ------HHHHHHHCHHHHSSBCCCHHHHHHHHHHHHH--HHHCTHHHHHHHHHHHHHHHHHHHTTCCBCSC-CSSEEEEE
T ss_pred ------HHHHHHhcccceecCCCCHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHhcCCCcCCC-CCCEEEEE
Confidence 3455443 22333334555665 45567753 34567889999999999999999888887654 58999999
Q ss_pred cCC-CChHHHHHHHHHhcCeEEeCCCCcCC-CCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 385 FPG-SSSWDVFAEILEKTHILTIPGSGFGP-GGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 385 ~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
++. .+..++...++++ ||.+.||..|.. .+.+++||++.. +++++++++++|+++
T Consensus 330 ~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~ 388 (398)
T 3a2b_A 330 IRSNEKTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKV 388 (398)
T ss_dssp CCCHHHHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 973 2455677777766 999999998853 346899999864 899999999999875
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=305.03 Aligned_cols=365 Identities=15% Similarity=0.139 Sum_probs=266.5
Q ss_pred cccchhhhHHhhhhCCC------CCccccccccccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCC-CCCCc
Q 013521 15 LKATVPFTMDFFLSSRW------PVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDT-TQPIP 87 (441)
Q Consensus 15 ~~~Tv~~a~~~l~~~g~------~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~ 87 (441)
...++.++|++++.+|+ ...++|+||.. .+++++||+.+.+ +++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~---------------------------~g~~~id~~~~~~~g~~~~ 59 (399)
T 3tqx_A 7 ILSQLNKEIEGLKKAGLYKSERIITSPQNAEIKV---------------------------GEKEVLNFCANNYLGLADH 59 (399)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCCCBCSCSSSEEEE---------------------------TTEEEEECSSCCTTSCTTC
T ss_pred HHHHHHHHHHHHHHcCCccccccccCCCCceEee---------------------------CCeeEEEeeccCcccccCC
Confidence 35679999999999999 24577777632 1346899999965 33568
Q ss_pred HHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEe
Q 013521 88 DIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQ 164 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~ 164 (441)
+.+.+++.+.+..+....... .|+...+..++++.+++++ +.+ ++|++++| ++++.. +..++++||.|+++
T Consensus 60 ~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----~~~-~~i~~~sG-t~a~~~~l~~~~~~gd~v~~~ 133 (399)
T 3tqx_A 60 PALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL----GTD-DTILYSSC-FDANGGLFETLLGPEDAIISD 133 (399)
T ss_dssp HHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH----TCS-EEEEESCH-HHHHHTTHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH----CCC-cEEEECch-HHHHHHHHHHhcCCCCEEEEC
Confidence 999999999988754222222 2444556789999999987 544 67777777 557776 77788999999999
Q ss_pred CCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-C---CCccEEEEcCCCCccccCCCHHHHHHHH
Q 013521 165 DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-T---SRTDIIFFCSPNNPTGHAATWQQLKKLV 240 (441)
Q Consensus 165 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~ 240 (441)
.|+|+++...++..| .+++.++..+.+.+...+.. . .++++|++++|+||||.+++ +++|+
T Consensus 134 ~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~ 198 (399)
T 3tqx_A 134 ELNHASIIDGIRLCK------------AQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD---LKSIC 198 (399)
T ss_dssp TTCCHHHHHHHHSCC------------SEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC---HHHHH
T ss_pred CcccHHHHHHHHHcC------------CceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC---HHHHH
Confidence 999999999988888 57888876321111100111 0 27899999999999999999 88999
Q ss_pred HHHHHcCcEEEEcccccccccCCCCCcccccCC-CcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHH
Q 013521 241 EFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI 319 (441)
Q Consensus 241 ~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~ 319 (441)
++|++||+++|+||+|+....+....++....+ ..+.+++++||||+++ |++.||++++++++ +.+...
T Consensus 199 ~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~~~~~--------~~~~~~ 268 (399)
T 3tqx_A 199 DLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGHKEII--------EWLRNR 268 (399)
T ss_dssp HHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEECHHHH--------HHHHHH
T ss_pred HHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcCHHHH--------HHHHHh
Confidence 999999999999999974333332223333222 2345699999999997 45559999998873 445443
Q ss_pred H-hh-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCC-ChHHHHHH
Q 013521 320 V-CT-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-SSWDVFAE 396 (441)
Q Consensus 320 ~-~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 396 (441)
. .. ...+.+.+.+.++.+.++... ++.++++++++++++++.+.|+++|+++.+ +.++++|+.++.. +..++...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 346 (399)
T 3tqx_A 269 SRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLVP-GNHPIIPVMLGDAQLATNMADH 346 (399)
T ss_dssp CHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CSSSEEEEEEECHHHHHHHHHH
T ss_pred CcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcCC-CCCCEEEEEeCCHHHHHHHHHH
Confidence 2 11 123466677777777775221 557899999999999999999998888774 5788899998742 45567777
Q ss_pred HHHhcCeEEeCCCCcC-CCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 397 ILEKTHILTIPGSGFG-PGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 397 ll~~~gi~v~pg~~f~-~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+++ +||.+.|+..+. +.+.+++||++. .+++++++++++|+++
T Consensus 347 l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 392 (399)
T 3tqx_A 347 LLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQV 392 (399)
T ss_dssp HHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHH
Confidence 776 599999876543 445679999984 5899999999999876
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=290.24 Aligned_cols=333 Identities=11% Similarity=0.078 Sum_probs=242.5
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCC--CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGY--GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
..++||+.|.+ ++++++.+.+++.+.+...........| +...+..++|+++++++ +++ +.|++++| ++++
T Consensus 39 ~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-~~i~~~sG-t~a~ 112 (384)
T 1bs0_A 39 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----GYS-RALLFISG-FAAN 112 (384)
T ss_dssp EEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----TCS-EEEEESCH-HHHH
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh----CCC-cEEEeCCc-HHHH
Confidence 46899999985 5567889999999998764321112223 45578899999999997 554 67777777 6787
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC-CCccEEEEcCCCCc
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT-SRTDIIFFCSPNNP 226 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-~~~~~v~i~~p~NP 226 (441)
.. +..++++||.|+++.|+|+.+...+...| .+++.+|..+...+...+... ++++++++++||||
T Consensus 113 ~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~np 180 (384)
T 1bs0_A 113 QAVIAAMMAKEDRIAADRLSHASLLEAASLSP------------SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSM 180 (384)
T ss_dssp HHHHHHHCCTTCEEEEETTCCHHHHHHHHTSS------------SEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTT
T ss_pred HHHHHHhCCCCcEEEEcccccHHHHHHHHHcC------------CCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 76 67778999999999999999998888888 477887753211111001111 24678888899999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc-ccCCCcceeEEEecCCcccCCccceeEEEEeecccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY-EIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~-~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~ 305 (441)
||.+++ +++|+++|++||++||+||+|+.+.++....++. .++. +..++++||||.++.+| ||++++++++
T Consensus 181 tG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~~~G---G~~~~~~~~~ 252 (384)
T 1bs0_A 181 DGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV--KPELLVVTFGKGFGVSG---AAVLCSSTVA 252 (384)
T ss_dssp TCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC--CCSEEEEESSSTTSSCC---EEEEECHHHH
T ss_pred CCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCC--CCcEEEeeccchhhccC---cEEEeCHHHH
Confidence 999999 8899999999999999999998765431111221 2221 23499999999999666 9999987773
Q ss_pred ccCCchhHHHHHHHH-hhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEE
Q 013521 306 YSNGYPVIKDFNRIV-CTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWV 383 (441)
Q Consensus 306 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 383 (441)
+.+.... ... ..+.+.+.+.++.++++.....+.++.+++++++++.+.+.|+++|+++.+ ..++++|+
T Consensus 253 --------~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~ 323 (384)
T 1bs0_A 253 --------DYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLAD-SCSAIQPL 323 (384)
T ss_dssp --------HHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECS-CCSSBCCE
T ss_pred --------HHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccC-CCCCEEEE
Confidence 4444321 111 124678888777777752110156788999999999999999998888764 57788888
Q ss_pred EcCC-CChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 384 QFPG-SSSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 384 ~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
+++. .+..++.+.++++ ||.+.||..|+ +.+.+++||++.. +++++++++++|+++
T Consensus 324 ~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 324 IVGDNSRALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp EEESHHHHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 8863 2345677777665 99999998775 3345799999854 899999999999875
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=287.85 Aligned_cols=359 Identities=14% Similarity=0.137 Sum_probs=255.8
Q ss_pred cchhhhHHhhhhCCC------CCccccccccccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCC--CcH
Q 013521 17 ATVPFTMDFFLSSRW------PVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQP--IPD 88 (441)
Q Consensus 17 ~Tv~~a~~~l~~~g~------~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~--~~~ 88 (441)
....+.++.+.++|+ ...++|.++.. ..+..++||+.|.+ ++ .++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------------------------~~g~~~id~~~~~~-~g~~~~~ 62 (401)
T 1fc4_A 10 QQLTNDLETARAEGLFKEERIITSAQQADITV--------------------------ADGSHVINFCANNY-LGLANHP 62 (401)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCBCSCSSSEEEB--------------------------TTSCEEEECCCSCT-TSCTTCH
T ss_pred HHHHHHHHHHHhcCCeeeeeeeccCCCceEEe--------------------------eCCccEEEeeccCc-ccccCCH
Confidence 345667888888887 23445555421 12456899999954 43 589
Q ss_pred HHHHHHHHHHhhccCCCCCCCC--CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeC
Q 013521 89 IITSAMAEHAFALSTVKGYKGY--GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQD 165 (441)
Q Consensus 89 ~~~~al~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~ 165 (441)
.+.+++.+.+..+........| +...+..++|+++|+++ +++ ++|++++|+ +++.. +..++++||.|+++.
T Consensus 63 ~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-~~i~~~sGs-~a~~~~~~~~~~~gd~v~~~~ 136 (401)
T 1fc4_A 63 DLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----GME-DAILYSSCF-DANGGLFETLLGAEDAIISDA 136 (401)
T ss_dssp HHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----TCS-EEEEESCHH-HHHHTTHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh----CCC-cEEEeCChH-HHHHHHHHHHcCCCCEEEEcc
Confidence 9999999988764321111223 22567899999999997 665 777777775 46665 677889999999999
Q ss_pred CCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC-C---CccEEEEcCCCCccccCCCHHHHHHHHH
Q 013521 166 PSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT-S---RTDIIFFCSPNNPTGHAATWQQLKKLVE 241 (441)
Q Consensus 166 p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-~---~~~~v~i~~p~NPtG~~~~~~~~~~i~~ 241 (441)
|+|+++...+...| .+++.++..+...+...+... + ++++|++++||||||.+++ +++|.+
T Consensus 137 ~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---~~~i~~ 201 (401)
T 1fc4_A 137 LNHASIIDGVRLCK------------AKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCD 201 (401)
T ss_dssp TCCHHHHHHHHTSC------------SEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHH
T ss_pred hhHHHHHHHHHHcC------------CceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC---HHHHHH
Confidence 99998888877777 477777642111110001110 1 6899999999999999999 899999
Q ss_pred HHHHcCcEEEEccccc-cccc-CCCC-CcccccCCCcceeEEEecCCccc-CCccceeEEEEeeccccccCCchhHHHHH
Q 013521 242 FAKANGSIIVYDSAYA-AYIT-DPSP-RSIYEIPGAREVAIEISSFSKFA-GFTGVRLGWTVVPEELRYSNGYPVIKDFN 317 (441)
Q Consensus 242 ~a~~~~~~ii~De~~~-~~~~-~~~~-~~~~~~~~~~~~~i~i~S~SK~~-~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 317 (441)
+|++||+++|+||+|+ ++.. .+.+ .+...+ .++.+++++||||.+ |.+| ||++++++++ +.+.
T Consensus 202 l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~--~~~~di~~~s~sK~~~~~~g---G~~~~~~~~~--------~~l~ 268 (401)
T 1fc4_A 202 LADKYDALVMVDDSHAVGFVGENGRGSHEYCDV--MGRVDIITGTLGKALGGASG---GYTAARKEVV--------EWLR 268 (401)
T ss_dssp HHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC--TTCCSEEEEESSSTTCSSSC---EEEEECHHHH--------HHHH
T ss_pred HHHHcCCEEEEECcccccccCCCCCccHHHcCC--CcCCcEEEecchhhccCCCC---EEEEcCHHHH--------HHHH
Confidence 9999999999999996 6653 2322 111222 234569999999999 5444 9999987763 4444
Q ss_pred HHHh-h-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC-CChHHHH
Q 013521 318 RIVC-T-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG-SSSWDVF 394 (441)
Q Consensus 318 ~~~~-~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 394 (441)
.... . ...+.+.+.+.++.+.++.. ...++.+++++++++.+.+.|+++|+++. +..++++|++++. .+..++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~ 345 (401)
T 1fc4_A 269 QRSRPYLFSNSLAPAIVAASIKVLEMV--EAGSELRDRLWANARQFREQMSAAGFTLA-GADHAIIPVMLGDAVVAQKFA 345 (401)
T ss_dssp HHCHHHHHSCCCCHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHTTCCBC-CSSSSEEEEEEECHHHHHHHH
T ss_pred HhCcCceeCCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCccc-CCCCCEEEEEcCChHHHHHHH
Confidence 3321 1 13357888888888777521 11367888999999999999998888876 4688899999964 2345666
Q ss_pred HHHHHhcCeEEeCCCCcCC-CCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 395 AEILEKTHILTIPGSGFGP-GGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 395 ~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+.+.++ ||.+.||..|+. .+.+++||++. .+++++++++++|+++
T Consensus 346 ~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 393 (401)
T 1fc4_A 346 RELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRI 393 (401)
T ss_dssp HHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 776655 999999987753 24578999985 5899999999999875
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=280.25 Aligned_cols=329 Identities=16% Similarity=0.163 Sum_probs=236.8
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhcc-CCCCCC--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALS-TVKGYK--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~-~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
+.|+.+..+ ++|+.+.+++.+.+.... +..... .|.+..+..++++++++++ ++++++|++|+|+++++.+
T Consensus 3 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~~~~ 77 (384)
T 1eg5_A 3 VYFDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL----GVSPSEIFFTSCATESINWI 77 (384)
T ss_dssp EECBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----TSCGGGEEEESCHHHHHHHH
T ss_pred EEEecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc----CCCCCeEEEECCHHHHHHHH
Confidence 566666655 678999999999887421 111111 2334567789999999997 7888999999999999997
Q ss_pred HHHhc----CCCCEEEEeCCCchhhHhHH---HHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEE
Q 013521 151 LQMLL----GSNVTVAVQDPSFPAYIDTS---VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDII 218 (441)
Q Consensus 151 l~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v 218 (441)
+..+. ++||+|++++|+|+++...+ ...| .+++.++.+.+. ..+++. .+++++|
T Consensus 78 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~--~~d~~~l~~~i~~~~~~v 143 (384)
T 1eg5_A 78 LKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKG------------FKVKYVPVDSRG--VVKLEELEKLVDEDTFLV 143 (384)
T ss_dssp HHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTT------------CEEEECCBCTTS--CBCHHHHHHHCCTTEEEE
T ss_pred HHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcC------------CEEEEEccCCCC--ccCHHHHHHHhCCCCeEE
Confidence 55565 79999999999999987766 4556 488888886532 233221 3578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcC--cEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANG--SIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~--~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
++++|+||||.+++ +++|.++|++|| ++||+||+|+ + ...+.++..+ +.++++.|+||.+|++| +|
T Consensus 144 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~-~--~~~~~~~~~~----~~di~~~s~sK~~g~~G--~G 211 (384)
T 1eg5_A 144 SIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT-I--GKIPFSLEKL----EVDYASFSAHKFHGPKG--VG 211 (384)
T ss_dssp EEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT-T--TTSCCCCTTT----CCSEEEEEGGGGTSCTT--CE
T ss_pred EEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhh-c--CCcccCchhc----CCCEEEecHHHhcCCCc--eE
Confidence 99999999999999 789999999999 9999999998 2 2222233222 35699999999999778 79
Q ss_pred EEEeeccc-cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013521 297 WTVVPEEL-RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG 375 (441)
Q Consensus 297 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 375 (441)
|+++++++ +.... ............+.+.+.+.++.++++. ..+++++.+++++++++.+.+.|++.|+++..+
T Consensus 212 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 286 (384)
T 1eg5_A 212 ITYIRKGVPIRPLI----HGGGQERGLRSGTQNVPGIVGAARAMEI-AVEELSEAAKHMEKLRSKLVSGLMNLGAHIITP 286 (384)
T ss_dssp EEEECTTSCCCCSB----CSSCTTTTTBCSCCCHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSC
T ss_pred EEEEcCCCcccccc----ccCcccccccCCCCChHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCC
Confidence 99999875 21100 0000001122345788888888777763 224578899999999999999999888887654
Q ss_pred CC---ceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCC-----------------CCCeEEEEee--cCHHHHHHH
Q 013521 376 KN---APYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG-----------------GNEHIRVSAF--GHREYISEA 433 (441)
Q Consensus 376 ~~---~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~~~~iRls~~--~~~~~~~~~ 433 (441)
.. +.++++.+++.+..++.+.|. ++||.+.||..|+.. ..+++||++. .++++++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~ 365 (384)
T 1eg5_A 287 LEISLPNTLSVSFPNIRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYF 365 (384)
T ss_dssp TTSBCTTEEEEECTTCCHHHHHHHHH-HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHH
T ss_pred cccCCCCEEEEEeCCCCHHHHHHHHh-hCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHH
Confidence 32 357888887556667777665 569999999877532 1478999986 589999999
Q ss_pred HHHHHhh
Q 013521 434 CRRLKNF 440 (441)
Q Consensus 434 l~~l~~~ 440 (441)
+++|+++
T Consensus 366 ~~~l~~~ 372 (384)
T 1eg5_A 366 LKKIEEI 372 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=281.82 Aligned_cols=316 Identities=16% Similarity=0.148 Sum_probs=236.9
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHHHHH-HHHhcCCCCE
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSDISR-LQMLLGSNVT 160 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~al~~-l~~l~~~gd~ 160 (441)
+.+.++.+.+++.+.+. .+|++ ...++++++++++.+.++++++ +|++|+|+++++.+ +..++++||+
T Consensus 42 ~~~~~~~v~~a~~~~~~--------~~~~~--~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~ 111 (393)
T 1vjo_A 42 PSNAHPSVLQAMNVSPV--------GHLDP--AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDV 111 (393)
T ss_dssp CCCCCHHHHHHHSSCCC--------CTTSH--HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCE
T ss_pred CCCCCHHHHHHHhcccc--------cccCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCE
Confidence 34667888877766432 14643 3567888888888776688888 99999999999997 6777899999
Q ss_pred EEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC-CccEEEEcCCCCccccCCCHH
Q 013521 161 VAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS-RTDIIFFCSPNNPTGHAATWQ 234 (441)
Q Consensus 161 Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~-~~~~v~i~~p~NPtG~~~~~~ 234 (441)
|++++|+|++ +...++..| .+++.++.+.+..++++ +++ .. ++++|++++|+||||.+++
T Consensus 112 Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~-- 177 (393)
T 1vjo_A 112 VLIGVAGYFGNRLVDMAGRYG------------ADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQP-- 177 (393)
T ss_dssp EEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC--
T ss_pred EEEEcCChhHHHHHHHHHHcC------------CceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc--
Confidence 9999999999 888888888 58889988754222221 211 23 7899999999999999998
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHH
Q 013521 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIK 314 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~ 314 (441)
+++|+++|++||+++|+||+|+ +. ..+..+ . ..+.++++.|+||.++.++ |+||++++++++ +
T Consensus 178 -l~~i~~l~~~~~~~li~Dea~~-~g--~~~~~~---~-~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~--------~ 240 (393)
T 1vjo_A 178 -LEGVGELCREFGTLLLVDTVTS-LG--GVPIFL---D-AWGVDLAYSCSQKGLGCSP-GASPFTMSSRAI--------E 240 (393)
T ss_dssp -CTTHHHHHHHHTCEEEEECTTT-TT--TSCCCT---T-TTTCSEEECCSSSTTCSCS-SCEEEEECHHHH--------H
T ss_pred -HHHHHHHHHHcCCEEEEECCcc-cc--CcCCcc---c-ccCccEEEEcCcccccCCC-ceEEEEECHHHH--------H
Confidence 7899999999999999999999 32 222222 1 1245699999999998677 999999998763 2
Q ss_pred HHHHH-------------------H-hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 315 DFNRI-------------------V-CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 315 ~~~~~-------------------~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
.+... . .....+.+.+.|.++.++++.....++++++++++++++++.+.|++.|+++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 320 (393)
T 1vjo_A 241 KLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHV 320 (393)
T ss_dssp HHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred HHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 22110 0 111115788888888888863222346888999999999999999988888766
Q ss_pred CCC---ceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--e-cCHHHHHHHHHHHHhhC
Q 013521 375 GKN---APYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--F-GHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~---~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~-~~~~~~~~~l~~l~~~l 441 (441)
+.+ +.++|+.++ +.+..++.+.+++++||.+.||+.|. .++++||++ . .+++++++++++|++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 321 EKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGEL--AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp CGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCcccc--CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 543 357889886 45667777777766699999998765 367999994 2 36778999999998863
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=281.00 Aligned_cols=333 Identities=15% Similarity=0.111 Sum_probs=240.6
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCC--CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKG--YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
++++++..+++ +++.++.+.+++.+.+........ ...|+...+..++|+++|+++ +. +++|++|+|++ ++
T Consensus 46 ~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~-~~~i~~~sG~~-a~ 119 (401)
T 2bwn_A 46 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH----QK-EAALVFSSAYN-AN 119 (401)
T ss_dssp EEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT----TC-SEEEEESCHHH-HH
T ss_pred CcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh----CC-CcEEEECCcHH-HH
Confidence 45789888776 555567899999999876432111 234666678999999999997 54 58999999988 54
Q ss_pred HH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C-CCccEEE
Q 013521 149 SR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T-SRTDIIF 219 (441)
Q Consensus 149 ~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~-~~~~~v~ 219 (441)
.. +..+. .+||.|+++.|+|+++...++..| .+++.++.++ ..++++ . +++++|+
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~d----~~~le~~l~~~~~~~~~~v~ 183 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNA------------GPKRIFRHND----VAHLRELIAADDPAAPKLIA 183 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSC------------CCEEEECTTC----HHHHHHHHHHSCTTSCEEEE
T ss_pred HHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcC------------CeEEEEcCCC----HHHHHHHHHhhccCCceEEE
Confidence 44 34333 699999999999999998888887 5788888641 112221 1 4789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCC-cceeEEEecCCcccCCccceeEEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGA-REVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
+++|+||||.+++ +++|+++|++||+++|+||+|+...+.....++....+. .+.+++++||||.+|++| ||+
T Consensus 184 ~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~ 257 (401)
T 2bwn_A 184 FESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYI 257 (401)
T ss_dssp EESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEE
T ss_pred EecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEE
Confidence 9999999999999 889999999999999999999954443222222221111 234699999999999888 999
Q ss_pred EeeccccccCCchhHHHHHHHHh-hh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013521 299 VVPEELRYSNGYPVIKDFNRIVC-TC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK 376 (441)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 376 (441)
+++++++ +.+..... .. ..+++.+.+.++.++++......+++++++++++++++.+.|++.|+++.++
T Consensus 258 ~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~- 328 (401)
T 2bwn_A 258 AASARMV--------DAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH- 328 (401)
T ss_dssp EECHHHH--------HHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-
T ss_pred ecCHHHH--------HHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC-
Confidence 9987663 33432211 11 1224456776666666421112347788899999999999998888887765
Q ss_pred CceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCC-CCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 377 NAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPG-GNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 377 ~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
.+.++|+.++. .+..++.+.|++++||.+.|+..|+.. +.+++|+++. .+++++++++++|++++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~ 397 (401)
T 2bwn_A 329 GSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 397 (401)
T ss_dssp SSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence 45689999973 334567777765669999999877643 4579999985 48999999999998864
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=283.36 Aligned_cols=329 Identities=16% Similarity=0.158 Sum_probs=240.3
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCC--CCCCCCC--CcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK--GYKGYGA--EQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQS 146 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~--~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~ 146 (441)
+++++|+.|.++ +.|+.+.+++.+.+....... +...|++ ..+..++|+++++++ +. ++++|++|+|+++
T Consensus 27 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~g~t~ 101 (420)
T 1t3i_A 27 HPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI----NARSPREIVYTRNATE 101 (420)
T ss_dssp EECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT----TCSCGGGEEEESSHHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc----CCCCCCeEEEcCChHH
Confidence 348999999988 788999999999887642111 2334543 467889999999996 66 6799999999999
Q ss_pred HHHH-HHHh----cCCCCEEEEeCCCchh----hHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C
Q 013521 147 DISR-LQML----LGSNVTVAVQDPSFPA----YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T 212 (441)
Q Consensus 147 al~~-l~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~ 212 (441)
++.+ +..+ +++||+|+++.|+|++ +...++..| .+++.++.+.+. ..+++. .
T Consensus 102 a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~--~~d~~~l~~~l~ 167 (420)
T 1t3i_A 102 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG------------AVLKFVQLDEQE--SFDLEHFKTLLS 167 (420)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC------------CEEEEECBCTTS--SBCHHHHHHHCC
T ss_pred HHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcC------------cEEEEeccCCCC--CcCHHHHHHhhC
Confidence 9998 5667 7899999999999999 455566677 588888886432 233221 3
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
+++++|++++|+||||.+++ +++|+++|++||+++|+|++|+.... +..+..+ +.++++.|+||.+|.+|
T Consensus 168 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~~----~~di~~~s~sK~~~~~g 237 (420)
T 1t3i_A 168 EKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY---PLDVQLI----DCDWLVASGHKMCAPTG 237 (420)
T ss_dssp TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEEGGGTTSCTT
T ss_pred CCceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc---cCchhhc----CCCEEEEehhhhcCCCc
Confidence 57899999999999999999 88999999999999999999985432 2223223 34689999999988667
Q ss_pred ceeEEEEeeccccccCCchhHHHHHHHHhh--------------------hcCCCcHHHHHHHHH-hcCCCcHHHHHHHH
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFNRIVCT--------------------CFNGASNIVQAGGLA-CLSPDGFQALRTVI 351 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~a~~~-~l~~~~~~~~~~~~ 351 (441)
+||++++++++ +.+...... ...+++.+.+.++.. +++.....++++++
T Consensus 238 --~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 307 (420)
T 1t3i_A 238 --IGFLYGKEEIL--------EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIH 307 (420)
T ss_dssp --CEEEEECHHHH--------HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred --eEEEEEchHHH--------hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999988763 222211110 012345566655443 33311112357888
Q ss_pred HHHHHHHHHHHHHHHhC-CCeeeCCC-----CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC-----CC-CCeE
Q 013521 352 DYYKENAKIIVDAFQSL-GLKVNGGK-----NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP-----GG-NEHI 419 (441)
Q Consensus 352 ~~~~~~~~~l~~~L~~~-g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~-~~~i 419 (441)
++++++++.+.+.|+++ |+++..+. .+.++++.+++.+..++.+. ++++||.+.||..|.. .+ ++++
T Consensus 308 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~g~~~~i 386 (420)
T 1t3i_A 308 NYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATM-VDQDGIAIRSGHHCTQPLHRLFDASGSA 386 (420)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHH-HHTTTEECBCSCTTCHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHH-HHHCCeEEeeccccchHHHHhcCCCCeE
Confidence 99999999999999988 88887654 26677777875455566654 5566999999975531 12 6789
Q ss_pred EEEeec--CHHHHHHHHHHHHhh
Q 013521 420 RVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 420 Rls~~~--~~~~~~~~l~~l~~~ 440 (441)
||++.. +++++++++++|+++
T Consensus 387 Ris~~~~~~~~~i~~~~~~l~~~ 409 (420)
T 1t3i_A 387 RASLYFYNTKEEIDLFLQSLQAT 409 (420)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHH
Confidence 999864 899999999999875
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=277.59 Aligned_cols=329 Identities=17% Similarity=0.170 Sum_probs=238.2
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCC----CCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGY----KGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQS 146 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~----~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~ 146 (441)
+++++|+.+.++ +.|+.+.+++.+.+......... .+|.+..+..++|+++++++ +. ++++|++|+|+++
T Consensus 22 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~g~t~ 96 (406)
T 1kmj_A 22 LPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----NARSAEELVFVRGTTE 96 (406)
T ss_dssp EECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----TCSCGGGEEEESSHHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc----CCCCCCeEEEeCChhH
Confidence 358999999987 67889999999988764210111 11334567889999999986 66 6789999999999
Q ss_pred HHHH-HHHh----cCCCCEEEEeCCCchhhH----hHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C
Q 013521 147 DISR-LQML----LGSNVTVAVQDPSFPAYI----DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T 212 (441)
Q Consensus 147 al~~-l~~l----~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~ 212 (441)
++.+ +..+ +++||+|+++.|+|++.. ..+...| .+++.++.+.+. ..+++. .
T Consensus 97 a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~--~~d~~~l~~~l~ 162 (406)
T 1kmj_A 97 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG------------AELRVIPLNPDG--TLQLETLPTLFD 162 (406)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHT------------CEEEEECBCTTS--CBCGGGHHHHCC
T ss_pred HHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCC------------CEEEEEecCCCC--CcCHHHHHHHhc
Confidence 9998 5666 789999999999998754 3345566 588888886532 233322 3
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
+++++|++++|+||||.+++ +++|+++|++||+++|+|++|+.... +..+... +.++++.|+||.+|.+|
T Consensus 163 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~---~~~~~~~----~~d~~~~s~~K~~g~~G 232 (406)
T 1kmj_A 163 EKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH---PVDVQAL----DCDFYVFSGHKLYGPTG 232 (406)
T ss_dssp TTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEEGGGTTSCTT
T ss_pred cCCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC---CCccccc----CCCEEEEEchhccCCCC
Confidence 57899999999999999999 89999999999999999999985322 2222222 35699999999998777
Q ss_pred ceeEEEEeeccccccCCchhHHHHHHHHh---------------------hhcCCCcHHHHHHHH-HhcCCCcHHHHHHH
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFNRIVC---------------------TCFNGASNIVQAGGL-ACLSPDGFQALRTV 350 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~-~~l~~~~~~~~~~~ 350 (441)
+||++++++++ +.+..... ....+++.+.+.+++ ++++.....++++.
T Consensus 233 --~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~ 302 (406)
T 1kmj_A 233 --IGILYVKEALL--------QEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNI 302 (406)
T ss_dssp --CEEEEECHHHH--------HHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred --cEEEEEeHHHH--------hhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 89999987763 22221110 011224556665544 34431111245788
Q ss_pred HHHHHHHHHHHHHHHHhC-CCeeeCCC-CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC------CCCCeEEEE
Q 013521 351 IDYYKENAKIIVDAFQSL-GLKVNGGK-NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP------GGNEHIRVS 422 (441)
Q Consensus 351 ~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~iRls 422 (441)
+++++++++++.+.|+++ |+++..+. .+.++++.+++.+..++.+.+ .++||.+.||..|.. ..++++||+
T Consensus 303 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~g~~~~iRis 381 (406)
T 1kmj_A 303 AEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRAS 381 (406)
T ss_dssp HHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHH-hhCCcEEEeccccchHHHHhcCCCCeEEEE
Confidence 889999999999999988 88887752 455666677755566666555 556999999986531 226899999
Q ss_pred eec--CHHHHHHHHHHHHhh
Q 013521 423 AFG--HREYISEACRRLKNF 440 (441)
Q Consensus 423 ~~~--~~~~~~~~l~~l~~~ 440 (441)
+.. ++++++++++.|+++
T Consensus 382 ~~~~~t~~~i~~~~~~l~~~ 401 (406)
T 1kmj_A 382 LAMYNTHEEVDRLVTGLQRI 401 (406)
T ss_dssp CCTTCCHHHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHH
Confidence 854 899999999999875
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-34 Score=280.69 Aligned_cols=333 Identities=17% Similarity=0.187 Sum_probs=239.2
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCC----CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGY----GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y----~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~ 145 (441)
+.+++||+.|++ ++..++.+.+++.+.+..+.. +...| +......++++.+++++ +.+ +.+++++|++
T Consensus 63 g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~G~~~~~~~l~~~la~~~----g~~-~~i~~~sGs~ 135 (427)
T 2w8t_A 63 GKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGS--GTCGSRMLNGTFHDHMEVEQALRDFY----GTT-GAIVFSTGYM 135 (427)
T ss_dssp TEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCS--CCCSCTTTTCCCHHHHHHHHHHHHHH----TCS-EEEEESCHHH
T ss_pred CceEEEEECcccccCCCCHHHHHHHHHHHHHhCC--CCcccccccCCcHHHHHHHHHHHHHh----CCC-ceEEecCcHH
Confidence 356899999985 556788999999999876431 22222 23345588888888886 543 5566666655
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-CC-CccEEEEcC
Q 013521 146 SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-TS-RTDIIFFCS 222 (441)
Q Consensus 146 ~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~~-~~~~v~i~~ 222 (441)
++.. +..++++||.|+++.|+|+++...+...| .+++.++..+-+.+...+.. .+ ++++|++++
T Consensus 136 -a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g------------~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~ 202 (427)
T 2w8t_A 136 -ANLGIISTLAGKGEYVILDADSHASIYDGCQQGN------------AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEG 202 (427)
T ss_dssp -HHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSC------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred -HHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcC------------CeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcC
Confidence 6554 67778999999999999999999988888 47777764211111000111 11 789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc-cCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE-IPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
|+||||.+++ +++|+++|++||+++|+||+|+.+.++....++.. ++-.++.+++++||||.+|++| ||++++
T Consensus 203 ~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~ 276 (427)
T 2w8t_A 203 VYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSN 276 (427)
T ss_dssp EETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEEC
T ss_pred CCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CEEEeC
Confidence 9999999999 89999999999999999999998776533333433 2212356799999999998777 999999
Q ss_pred ccccccCCchhHHHHHHH-Hhh-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-Cc
Q 013521 302 EELRYSNGYPVIKDFNRI-VCT-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK-NA 378 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~ 378 (441)
++++ +.+... ... ...+.+++.+.++.+.++.. +++++++++++++++++.+.|+++|+.+..+. .+
T Consensus 277 ~~l~--------~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 346 (427)
T 2w8t_A 277 HPKF--------EAVRLACRPYIFTASLPPSVVATATTSIRKL--MTAHEKRERLWSNARALHGGLKAMGFRLGTETCDS 346 (427)
T ss_dssp CTTG--------GGGGGTCHHHHSSCCCCHHHHHHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCS
T ss_pred HHHH--------HHHHHhcccccccCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCC
Confidence 8774 222221 111 12335666666555666521 12467889999999999999998888876334 67
Q ss_pred eEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCC-CCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 379 PYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGP-GGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 379 ~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
+++|+.++. ....++...|+++ ||.+.|+..|+. .+.+++||++.. +++++++++++|+++
T Consensus 347 ~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~ 411 (427)
T 2w8t_A 347 AIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAA 411 (427)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 899999973 2345677777766 999999987753 345799999854 899999999999875
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=270.16 Aligned_cols=320 Identities=12% Similarity=0.073 Sum_probs=228.2
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEE
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTV 161 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~V 161 (441)
+.++|+.+.+++.+.+.. ...|....+..++|+++++++ ++++++|++|+|+++++.+ +..++++||+|
T Consensus 9 p~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v 78 (352)
T 1iug_A 9 PVRLHPKALEALARPQLH------HRTEAAREVFLKARGLLREAF----RTEGEVLILTGSGTLAMEALVKNLFAPGERV 78 (352)
T ss_dssp SCCCCHHHHHHHHSCCCC------TTSHHHHHHHHHHHHHHHHHH----TCSSEEEEEESCHHHHHHHHHHHHCCTTCEE
T ss_pred CCCCCHHHHHHhccCCCC------ccCHHHHHHHHHHHHHHHHHh----CCCCceEEEcCchHHHHHHHHHhccCCCCeE
Confidence 356778888888775431 111212346688999999987 7778899999999999998 67778999999
Q ss_pred EEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCCccCC-CCCCCCccEEEEcCCCCccccCCCHHHHHH
Q 013521 162 AVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LSTTSRTDIIFFCSPNNPTGHAATWQQLKK 238 (441)
Q Consensus 162 lv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~ 238 (441)
++++|+|+++. ..+...| .+++.++.+.++.++++ +++ +++++|++++|+||||.+++ +++
T Consensus 79 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~-~~~~~v~~~~~~nptG~~~~---l~~ 142 (352)
T 1iug_A 79 LVPVYGKFSERFYEIALEAG------------LVVERLDYPYGDTPRPEDVAK-EGYAGLLLVHSETSTGALAD---LPA 142 (352)
T ss_dssp EEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCTTTSCC-SSCSEEEEESEETTTTEECC---HHH
T ss_pred EEEeCCchhHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHhc-cCCcEEEEEEecCCcceecC---HHH
Confidence 99999999975 3334456 48888888754333322 333 67899999999999999999 789
Q ss_pred HHHHHHHc--CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC-----ch
Q 013521 239 LVEFAKAN--GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG-----YP 311 (441)
Q Consensus 239 i~~~a~~~--~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~-----~~ 311 (441)
|.++|++| |+++|+|++|+.. ..+..+... +.++++.|+||+++ ++.++||++++++.+..-. ..
T Consensus 143 i~~l~~~~~~~~~li~D~a~~~~---~~~~~~~~~----~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~ 214 (352)
T 1iug_A 143 LARAFKEKNPEGLVGADMVTSLL---VGEVALEAM----GVDAAASGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLD 214 (352)
T ss_dssp HHHHHHHHCTTCEEEEECTTTBT---TBCCCSGGG----TCSEEEEESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTC
T ss_pred HHHHHHhhCCCCEEEEECCcccc---Ccceecccc----CeeEEEecCccccc-CCCceeEEEECHHHHHHhhCCCceee
Confidence 99999999 9999999999731 112222222 34588999999554 3345899999887641100 00
Q ss_pred hHHHHHHH-HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-CceEEEEEcC-CC
Q 013521 312 VIKDFNRI-VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK-NAPYVWVQFP-GS 388 (441)
Q Consensus 312 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~-~~ 388 (441)
....+... ......+.+...+.++.++++... +++++.+++++++++++.+.|+++|+++..+. .++++|++++ +.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T 1iug_A 215 LARELKAQKEGESAWTPAINLVLAVAAVLEEVL-PRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGV 293 (352)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTC
T ss_pred HHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCC
Confidence 01111111 112233456666666666664211 22678899999999999999998888887654 6789999997 55
Q ss_pred ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 389 SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 389 ~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+..++.+.+.++ ||.+.||.. +..++++||++. .+++++++++++|+++
T Consensus 294 ~~~~~~~~l~~~-gi~v~~~~~--~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 344 (352)
T 1iug_A 294 PYARVKEAFAQR-GAVIAGGQG--PLKGKVFRLSLMGAYDRYEALGVAGMFREV 344 (352)
T ss_dssp CHHHHHHHHHTT-TEECEECCG--GGTTTEEEECCCSSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CEEEEeCCC--ccCCCEEEEEccccCCHHHHHHHHHHHHHH
Confidence 667777777655 999999873 234679999985 3789999999999875
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=273.87 Aligned_cols=321 Identities=14% Similarity=0.148 Sum_probs=235.1
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcHHHHHH-HHHhcCCCCEE
Q 013521 84 QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQSDISR-LQMLLGSNVTV 161 (441)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~~al~~-l~~l~~~gd~V 161 (441)
.+.++.+.+++.+.+. .+|++ ...++++++++++.+.++++ +++|++|+|+++++.+ +..++++||+|
T Consensus 29 ~~~~~~v~~a~~~~~~--------~~~~~--~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~v 98 (386)
T 2dr1_A 29 VACFPEVLEIMKVQMF--------SHRSK--EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKV 98 (386)
T ss_dssp CCCCHHHHHHTTSCCC--------CTTSH--HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEE
T ss_pred cCCcHHHHHHHhcccc--------cccCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeE
Confidence 3566777777665332 25643 23678888888887755766 7789999999999998 56678999999
Q ss_pred EEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC----CCCccEEEEcCCCCccccCCCHH
Q 013521 162 AVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST----TSRTDIIFFCSPNNPTGHAATWQ 234 (441)
Q Consensus 162 lv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~----~~~~~~v~i~~p~NPtG~~~~~~ 234 (441)
++++|+|++ +...+...| .+++.++.+.+..++++ +++ .+++++|++++|+||||.+++
T Consensus 99 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~-- 164 (386)
T 2dr1_A 99 LVTIIGAFGKRYKEVVESNG------------RKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP-- 164 (386)
T ss_dssp EEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC--
T ss_pred EEEcCCchhHHHHHHHHHhC------------CceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC--
Confidence 999999998 788888888 58888988753222221 111 357899999999999999998
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC-----
Q 013521 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG----- 309 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~----- 309 (441)
+++|+++|++||+++|+|++|+.+... .++.. .++++++.|+||.++.+ .++||++++++++..-.
T Consensus 165 -l~~i~~l~~~~~~~li~D~a~~~~~~~---~~~~~----~~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~ 235 (386)
T 2dr1_A 165 -LPELAKVAKEHDKLVFVDAVSAMGGAD---IKFDK----WGLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPER 235 (386)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTTBTTBC---CCTTT----TTCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTC
T ss_pred -HHHHHHHHHHcCCeEEEEccccccCcc---ccccc----cCCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCCC
Confidence 899999999999999999999965432 22221 24569999999999854 35999999987641100
Q ss_pred ---chhHHHHHHH--HhhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC---CceE
Q 013521 310 ---YPVIKDFNRI--VCTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSLGLKVNGGK---NAPY 380 (441)
Q Consensus 310 ---~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~ 380 (441)
......+... ......+.+.+.|.++.++++..... ++++++++++++++.+.+.|+++|+++..+. .+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 315 (386)
T 2dr1_A 236 GWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTI 315 (386)
T ss_dssp CSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSE
T ss_pred ceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCce
Confidence 0000001111 11233457788888887777631111 2578899999999999999998888876653 3788
Q ss_pred EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 381 VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+|++++ +.+..++.+.|+++ ||.+.||..|. ..+++||++. .+++++++++++|+++
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 375 (386)
T 2dr1_A 316 TAVLTPPGIKGDEVYEAMRKR-GFELAKGYGSV--KEKTFRIGHMGYMKFEDIQEMLDNLREV 375 (386)
T ss_dssp EEEECCTTCCHHHHHHHHHHT-TEECEECCGGG--TTTEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHC-CeEEecCcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999997 45667788887776 99999998653 4579999986 5899999999999875
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=274.01 Aligned_cols=316 Identities=13% Similarity=0.105 Sum_probs=225.5
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcH---HHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNM---ALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~---~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.++++++|+++.|+.+.+++.+.+..+......+.|+. .|.+ ++++++|+++ +. +++++++|+++++.+
T Consensus 21 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~----g~--~~~i~~~~g~~ai~~~ 93 (404)
T 1e5e_A 21 QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLE----KT--EACVATSSGMGAIAAT 93 (404)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHh----CC--CcEEEeCChHHHHHHH
Confidence 46889999999888887777776653332234556865 5666 8999999997 44 377777777899987
Q ss_pred HHHhcCCCCEEEEeCCCchhhHh----HHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYID----TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNP 226 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NP 226 (441)
+..++++||.|+++.|+|+++.. .+...| .+++.++.++.+.+...+ .+++++|++++|+||
T Consensus 94 ~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~i--~~~t~~v~l~~p~Np 159 (404)
T 1e5e_A 94 VLTILKAGDHLISDECLYGCTHALFEHALTKFG------------IQVDFINTAIPGEVKKHM--KPNTKIVYFETPANP 159 (404)
T ss_dssp HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT------------CEEEEECTTSTTHHHHHC--CTTEEEEEEESSCTT
T ss_pred HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcC------------CEEEEECCCCHHHHHHhc--CCCCcEEEEECCCCC
Confidence 56788999999999999999888 566677 588888875211111111 357999999999999
Q ss_pred cccCCCHHHHHHHHHHHHH-cCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee-EEEEeeccc
Q 013521 227 TGHAATWQQLKKLVEFAKA-NGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEEL 304 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~-~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~ 304 (441)
||.+++ +++|+++|++ ||+++|+||+|..+.+.. ++ .+ ++++++.|+||.++.+|+|+ ||++++++.
T Consensus 160 tG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~---~~-~~----~~di~~~S~sK~~~~~g~ri~G~~~~~~~~ 228 (404)
T 1e5e_A 160 TLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN---PV-DF----GVDVVVHSATKYINGHTDVVAGLICGKADL 228 (404)
T ss_dssp TCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC---GG-GG----TCSEEEEETTTTTTCSSCCCCEEEEECHHH
T ss_pred CCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC---cc-cc----CCEEEEEcCccccCCCCCCeEEEEEECHHH
Confidence 999998 8999999999 999999999999876531 22 22 45799999999999999998 999999887
Q ss_pred cccCCchhHH-HHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-C-----------
Q 013521 305 RYSNGYPVIK-DFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-L----------- 370 (441)
Q Consensus 305 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~----------- 370 (441)
+ + .+....... ....+++.+.++.+.++. +..+.+...++.+.+.+.|++.. +
T Consensus 229 ~--------~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~ 295 (404)
T 1e5e_A 229 L--------QQIRMVGIKDITGSVISPHDAWLITRGLST-----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDH 295 (404)
T ss_dssp H--------HHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSS
T ss_pred H--------HHHHHHHHHhCCCCCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCC
Confidence 4 3 454443332 345788888888888863 23344555666677777776552 2
Q ss_pred ---eeeCCC---CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC-----------------------CC--CCeE
Q 013521 371 ---KVNGGK---NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP-----------------------GG--NEHI 419 (441)
Q Consensus 371 ---~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----------------------~~--~~~i 419 (441)
++..++ .|.++.+++++ ..+....++++.|| +.+|..|+. .+ +++|
T Consensus 296 p~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~i 372 (404)
T 1e5e_A 296 EGHDIAKKQMRMYGSMITFILKS--GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMI 372 (404)
T ss_dssp TTHHHHHHHCSSCCSEEEEEETT--HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEE
T ss_pred ccHHHHHhhCCCCceEEEEEeCC--CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeE
Confidence 111111 24454448863 23456667888899 666665552 22 6899
Q ss_pred EEEeecCHHHHHHHHHHHHhh
Q 013521 420 RVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 420 Rls~~~~~~~~~~~l~~l~~~ 440 (441)
|||++. ++++++++.|+++
T Consensus 373 Ris~g~--e~~~~li~~l~~a 391 (404)
T 1e5e_A 373 RLSVGI--EDADELIADFKQG 391 (404)
T ss_dssp EEECCS--SCHHHHHHHHHHH
T ss_pred EEEeCC--CCHHHHHHHHHHH
Confidence 999876 6667777776654
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=270.80 Aligned_cols=333 Identities=14% Similarity=0.100 Sum_probs=235.5
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCC--CCCCCC-CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKG--YKGYGA-EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~--~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
+.++|+.+.+. +.|+.+.+++.+.+........ ...|+. ..+..++|+++++++ ++++++|++|+|+++++.
T Consensus 16 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~~ 90 (390)
T 1elu_A 16 NKTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF----NVDPNTITITDNVTTGCD 90 (390)
T ss_dssp TSEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT----TSCGGGEEEESSHHHHHH
T ss_pred CeEEecCCccC-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc----CCCHHHEEEeCChHHHHH
Confidence 47899988743 5678899999998865321011 113533 367899999999996 788889999999999999
Q ss_pred H-HHHh-cCCCCEEEEeCCCchhhHhH----HHHhccccccccccCccceeEEeecCCCCCccCCC---CC--CCCccEE
Q 013521 150 R-LQML-LGSNVTVAVQDPSFPAYIDT----SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL---ST--TSRTDII 218 (441)
Q Consensus 150 ~-l~~l-~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~~--~~~~~~v 218 (441)
+ +..+ +++||+|+++.|+|+++... ++..| .+++.++.+.+.++..++ ++ .+++++|
T Consensus 91 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v 158 (390)
T 1elu_A 91 IVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFG------------ITYRFFPVAATLNQGDAAAVLANHLGPKTRLV 158 (390)
T ss_dssp HHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHC------------CEEEEECCGGGSSSSCHHHHHHTTCCTTEEEE
T ss_pred HHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhC------------cEEEEEcCCCCCCccchHHHHHHhcCCCceEE
Confidence 8 5666 68999999999999997654 34556 488888886322222222 21 3578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHH----HcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAK----ANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~----~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
++++|+||||.+++ +++|.++|+ +||+++|+||+|+... .+..+.. .+.++++.|+||.+. +|.+
T Consensus 159 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~---~~~~~~~----~~~d~~~~s~~K~~~-~~~g 227 (390)
T 1elu_A 159 ILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGS---LPLDFSR----LEVDYYAFTGHKWFA-GPAG 227 (390)
T ss_dssp EEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTT---BCCCTTT----SCCSEEEEESSSTTC-CCTT
T ss_pred EEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCC---cCCChhh----cCCCEEEcccccccc-CCCc
Confidence 99999999999999 889999999 9999999999998421 1222211 234699999999553 6778
Q ss_pred eEEEEeeccccccCCchhHHHHH---------------HHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHH
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFN---------------RIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENA 358 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~ 358 (441)
+||++++++++..-..... .+. ........+.+.+.+.++.+++..... .+++++++++++++
T Consensus 228 ~G~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~ 306 (390)
T 1elu_A 228 VGGLYIHGDCLGEINPTYV-GWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRS 306 (390)
T ss_dssp CEEEEECTTTGGGCCCCSC-CTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred eEEEEECHHhHhhcCCccc-cCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999877522100000 000 001112234566666655555541111 23688899999999
Q ss_pred HHHHHHHHhC-CCeeeCC--CCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHH
Q 013521 359 KIIVDAFQSL-GLKVNGG--KNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISE 432 (441)
Q Consensus 359 ~~l~~~L~~~-g~~~~~~--~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~ 432 (441)
+.+.+.|+++ |+++..+ ..+.+++++++ +.+..++.+.|. ++||.+.||. +++++||++ ..+++++++
T Consensus 307 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~-----~~~~iRis~~~~~~~~~i~~ 380 (390)
T 1elu_A 307 EFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLE-EQRIYLRTIA-----DPDCIRACCHYITDEEEINH 380 (390)
T ss_dssp HHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHH-HTTEECEEET-----TTTEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHH-HCCEEEEecC-----CCCeEEEecccCCCHHHHHH
Confidence 9999999987 8887642 34666666886 445667777775 5599999975 357999997 368999999
Q ss_pred HHHHHHhh
Q 013521 433 ACRRLKNF 440 (441)
Q Consensus 433 ~l~~l~~~ 440 (441)
++++|+++
T Consensus 381 ~~~~l~~~ 388 (390)
T 1elu_A 381 LLARLADF 388 (390)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhh
Confidence 99999875
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=270.90 Aligned_cols=331 Identities=15% Similarity=0.155 Sum_probs=233.6
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++||+.+.+ ++. +++.+.+++.+.+.... .....| +..+..++++++++++ ++ +++|++|+|++++
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~--~~~~~y-~~~~~~~l~~~la~~~----g~-~~~v~~~~g~t~a 98 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLL--HVSNLY-ENPWQEELAHKLVKHF----WT-EGKVFFANSGTES 98 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCS--CCCTTB-CCHHHHHHHHHHHHTS----SS-CEEEEEESSHHHH
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhcc--ccCccc-CCHHHHHHHHHHHhhc----CC-CCeEEEeCchHHH
Confidence 346889998864 455 78999999999887642 222357 4567889999999985 66 4899999999999
Q ss_pred HHH-HHH---hc---CCC-CEEEEeCCCchhhHhHHHHhccccc----cccccCccceeEEeecCCCCCccCCCCCCCCc
Q 013521 148 ISR-LQM---LL---GSN-VTVAVQDPSFPAYIDTSVIVGQAGK----FLKETGKYRNIVYMNCRPENNFFPDLSTTSRT 215 (441)
Q Consensus 148 l~~-l~~---l~---~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~----~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 215 (441)
+.+ +.. +. ++| |+|++++|+|+++...+...+.... +.+.. .++..++..+-+.+...+ .+++
T Consensus 99 ~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~l~~~l--~~~~ 173 (375)
T 2eh6_A 99 VEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLV---PGFSYAKLNDIDSVYKLL--DEET 173 (375)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCC---SSEEEECTTCHHHHHTTC--CTTE
T ss_pred HHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCC---CCceeCCCchHHHHHHHh--cCCe
Confidence 997 432 35 788 9999999999998766655543211 00000 024444432111111111 2578
Q ss_pred cEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce
Q 013521 216 DIIFFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
++|++++|+||||.++ +.+++++|+++|++||+++|+||+|.+|...+.+.++..+...++ ++ ||||.++ +|+|
T Consensus 174 ~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d--~~--s~SK~~~-~g~~ 248 (375)
T 2eh6_A 174 AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPD--VI--ALAKGLG-GGVP 248 (375)
T ss_dssp EEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS--EE--EECGGGG-TTSC
T ss_pred EEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCC--EE--EEccccc-CCCC
Confidence 9999989999999994 688999999999999999999999997655432233333321123 22 8899998 8999
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
+||++++++++ +.+.........+++.+.+.++.++++. .++.+++++++++.+.+.|++++....+
T Consensus 249 ~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 315 (375)
T 2eh6_A 249 IGAILAREEVA--------QSFTPGSHGSTFGGNPLACRAGTVVVDE-----VEKLLPHVREVGNYFKEKLKELGKGKVK 315 (375)
T ss_dssp CEEEEEEHHHH--------TTCCTTSCCCSSTTCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTSSEEE
T ss_pred eEEEEEcHHHH--------hhhcCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 99999998763 2222111122334678888877777652 1267788889999999999887543333
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
..|+++|++++. +..++.+.+++ +||.+.|+ +++++||++ ..+++++++++++|++++
T Consensus 316 -~~g~~~~~~~~~-~~~~~~~~l~~-~gi~~~~~------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 316 -GRGLMLGLELER-ECKDYVLKALE-KGLLINCT------AGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp -EETTEEEEECSS-CCHHHHHHHHH-TTEECEEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred -EEEEEEEEEEcC-cHHHHHHHHHH-CCCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 468899999974 45677777775 59999985 257899996 458999999999999875
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=278.86 Aligned_cols=325 Identities=14% Similarity=0.111 Sum_probs=230.1
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccC--C--CCCCCCCCCcCcHHHHHH-HHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALST--V--KGYKGYGAEQGNMALRTA-IADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~--~--~~~~~Y~~~~g~~~lr~~-ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
+++++|+.|.+..++++.+.+++.+.+..... . .....|.+..+..+++++ +++++ +.+ +|++|+|+++
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~----~~~--~v~~~~g~t~ 80 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL----GCD--VARVTNGARE 80 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT----TSS--EEEEESSHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHc----CCC--EEEEeCChHH
Confidence 46889988776667889999999987754210 0 012245567899999999 99996 555 9999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEee--cCCCCCccCC-CCC--C-----CCc
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMN--CRPENNFFPD-LST--T-----SRT 215 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~--~~~~~~~~~~-~~~--~-----~~~ 215 (441)
++.+ +..++++||+|++++|+|+++...+...| .+++.++ .+++..++++ +++ . +++
T Consensus 81 a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 148 (371)
T 2e7j_A 81 AKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAG------------LNIALVPKTDYPDYAITPENFAQTIEETKKRGEV 148 (371)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTT------------CEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcC------------CeEEEeecccCCCCCcCHHHHHHHHHhhcccCCe
Confidence 9997 67778999999999999999999888888 5888888 6543332221 111 1 578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+++++++|+||||.+++ +++|+++|++||+++|+||+|+.+.. +.++..+ +..+++.|+||+++ ++.|+
T Consensus 149 ~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~---~~~~~~~----~~di~~~s~sK~~~-~~~~~ 217 (371)
T 2e7j_A 149 VLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM---PVSLKEI----GADFIVGSGHKSMA-ASGPI 217 (371)
T ss_dssp EEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB---CCCHHHH----TCSEEEEEHHHHSS-CCSSC
T ss_pred EEEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCC---CCChhhc----CCCEEEecCCcCCC-CCCCc
Confidence 99999999999999999 68999999999999999999997543 2233333 23499999999997 55699
Q ss_pred EEEEeeccccccCCchhHHHHHHHHh--hh-----cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHH--HHHHHHHHHHHH
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVC--TC-----FNGASNIVQAGGLACLSPDGFQALRTVIDYY--KENAKIIVDAFQ 366 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~L~ 366 (441)
||++++++++... +..... .. ..+.+...+.++.+.++. ... +.++++ +++++++.+.|+
T Consensus 218 G~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~--~~~~~~~~~~~~~~l~~~L~ 286 (371)
T 2e7j_A 218 GVMGMKEEWAEIV-------LRRSEKYKNKEVELLGCTARGATIITLMASFPH--VRE--RIKRWDEEVEKARRFAAEME 286 (371)
T ss_dssp EEEEECTTTTTTT-------TCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH--HHH--HGGGHHHHHHHHHHHHHHHH
T ss_pred EEEEEechhhhhh-------ccccccCcccccccccCCcCHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999998874210 111111 01 223444444444444431 111 566777 888899999998
Q ss_pred hCCCeeeCCC--CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC----CCCCeEE-EEee---cCHHHHHHHHHH
Q 013521 367 SLGLKVNGGK--NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP----GGNEHIR-VSAF---GHREYISEACRR 436 (441)
Q Consensus 367 ~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~~iR-ls~~---~~~~~~~~~l~~ 436 (441)
++|+++..+. .+.++|++++ +..++.+.+. ++||.+.| ..|.. ..++++| +++. .+++++++++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~ 362 (371)
T 2e7j_A 287 KLGIKQLGDNPHNHDLMFFHAE--VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNA 362 (371)
T ss_dssp HTTCEEESSSSCCSSEEEEECH--HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHH
T ss_pred HcCcEEecCCCccCceEEEECC--CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHH
Confidence 8888887654 4778999987 4456666655 66999988 44432 1267899 9986 689999999999
Q ss_pred HHhh
Q 013521 437 LKNF 440 (441)
Q Consensus 437 l~~~ 440 (441)
|+++
T Consensus 363 l~~~ 366 (371)
T 2e7j_A 363 FKEI 366 (371)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=266.80 Aligned_cols=331 Identities=12% Similarity=0.058 Sum_probs=231.3
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC----CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 76 RLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA----EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 76 ~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.|+.+.+. ++|+.+.+++.+.+..... .....|.. .....++++.+++++ ++++++|++|+|+++++.+
T Consensus 3 yld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSAK-PVDERILEAMLPYMTESFG-NPSSVHSYGFKAREAVQEAREKVAKLV----NGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTCC-CCCHHHHHHHHHHHHTSCC-CTTCSSHHHHHHHHHHHHHHHHHHHHH----TCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCCC-CCCHHHHHHHHHHHHhccC-CCCCCcHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEcCchHHHHHHH
Confidence 34444443 6789999999998875321 11112422 235677888888876 7788899999999999997
Q ss_pred HHHhc----CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCC
Q 013521 151 LQMLL----GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSP 223 (441)
Q Consensus 151 l~~l~----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p 223 (441)
+..+. ++||+|++++|+|+++...+..+...| .+++.++++.++.++++ +++ .+++++|++++|
T Consensus 77 ~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~ 147 (382)
T 4eb5_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQG---------FEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHA 147 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTT---------CEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSB
T ss_pred HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCC---------cEEEEeccCCCCccCHHHHHHHhcCCCeEEEEecc
Confidence 56666 899999999999999877776542222 48888988754322221 211 357899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
+||||.+++ +++|+++|++||++ |+|++|+. ...+..+... +.++++.|+||.+|.+| +||++++++
T Consensus 148 ~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~---g~~~~~~~~~----~~di~~~s~sK~~g~~g--~G~~~~~~~ 214 (382)
T 4eb5_A 148 NNEIGTIQP---VEEISEVLAGKAAL-HIDATASV---GQIEVDVEKI----GADMLTISSNDIYGPKG--VGALWIRKE 214 (382)
T ss_dssp CTTTCBBCC---HHHHHHHHTTSSEE-EEECTTTB---TTBCCCHHHH----TCSEEEEETGGGTCCSS--CEEEEEETT
T ss_pred CCCccccCC---HHHHHHHHHHCCCE-EEEcchhc---CCcccCcccc----CCCEEEeehHHhcCCCc--eEEEEEccc
Confidence 999999999 78999999999999 99999982 1112223222 34589999999987556 799999887
Q ss_pred c-cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCC---c
Q 013521 304 L-RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKN---A 378 (441)
Q Consensus 304 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---~ 378 (441)
. +.... ............+.+...+.++.++++. ..+++++++++++++++.+.+.|+++ ++++..+.+ +
T Consensus 215 ~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 289 (382)
T 4eb5_A 215 AKLQPVI----LGGGQENGLRSGSENVPSIVGFGKAAEI-TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLP 289 (382)
T ss_dssp CCCCCSS----CSSCTGGGTSCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCT
T ss_pred cccCcee----cCCCccccccCCCccHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCC
Confidence 4 21100 0000001122233555555555555541 11356888899999999999999987 787765432 5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCC-----------------CCCeEEEEee--cCHHHHHHHHHHHHh
Q 013521 379 PYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG-----------------GNEHIRVSAF--GHREYISEACRRLKN 439 (441)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~~~~iRls~~--~~~~~~~~~l~~l~~ 439 (441)
.++|+.+++.+..++.+.+.+ +||.+.+|..|.+. +++++||++. .+++++++++++|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 368 (382)
T 4eb5_A 290 NNVNVRFSYIEGESIVLSLDM-AGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPG 368 (382)
T ss_dssp TEEEEEETTSCHHHHHHHHHH-HTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcCHHHHHHHHHH-CCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 678888876566777777664 59999999876532 2579999986 489999999999987
Q ss_pred h
Q 013521 440 F 440 (441)
Q Consensus 440 ~ 440 (441)
+
T Consensus 369 ~ 369 (382)
T 4eb5_A 369 V 369 (382)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=266.78 Aligned_cols=317 Identities=12% Similarity=0.053 Sum_probs=231.2
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCC-----
Q 013521 84 QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGS----- 157 (441)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~----- 157 (441)
.++++.+.+++.+.+... ..+|....+..++++++++++.+.+++++++|++|+|+++++.+ +..+..+
T Consensus 40 ~~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~ 114 (397)
T 3f9t_A 40 SNVLPITRKIVDIFLETN-----LGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKR 114 (397)
T ss_dssp CCCCTHHHHHHHHHTTCC-----TTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhhc-----CCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhh
Confidence 345678888998877532 11222223566777777777776678899999999999999987 5555554
Q ss_pred --------CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC-CccEEEEcCCCC
Q 013521 158 --------NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS-RTDIIFFCSPNN 225 (441)
Q Consensus 158 --------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~-~~~~v~i~~p~N 225 (441)
||+|+++.|+|+++...+...| .+++.++.+++..++++ +++ .+ +++++++++|+|
T Consensus 115 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 182 (397)
T 3f9t_A 115 RKGLSKNEHPKIIVPITAHFSFEKGREMMD------------LEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTT 182 (397)
T ss_dssp HTTCCCCSSCEEEEETTCCTHHHHHHHHHT------------CEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCT
T ss_pred hhcccCCCCeEEEECCcchhHHHHHHHHcC------------ceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCC
Confidence 9999999999999999999998 58999998764332222 211 23 789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC--c------ccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR--S------IYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~--~------~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
|||.+.+ +++|+++|++||+++|+||+|+.+..+.... + ...+. . +..+++.|++|.++ +|+|+||
T Consensus 183 ptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~s~~K~~~-~~~~~g~ 256 (397)
T 3f9t_A 183 ELGTIDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS-L-GVDSITIDPHKMGH-CPIPSGG 256 (397)
T ss_dssp TTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG-G-TCSEEECCTTTTTC-CCSSCEE
T ss_pred CCCCCCC---HHHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccccc-c-cCCeEEEccccccC-CCCCceE
Confidence 9999998 8889999999999999999998754421110 0 11111 1 34588999999885 8889999
Q ss_pred EEeeccccccCCchhHHHHHHHHhh-----------hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCT-----------CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
++++++.+. +.+...... ...+.+.+.+.++.+.+. ..++++..++++++++++.+.|+
T Consensus 257 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~ 326 (397)
T 3f9t_A 257 ILFKDIGYK-------RYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG---REGQRKIVNECMENTLYLYKKLK 326 (397)
T ss_dssp EEESSGGGG-------GGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCHHHH-------HhhccCCccccCCCccccccccccchHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876541 111100000 111235566666666653 34557788888899999999999
Q ss_pred hCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 367 SLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
++|+.+..++.++++|+.++. ..++.+.+.++ ||.+.++.. ++++||++. .+++++++++++|++++
T Consensus 327 ~~g~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~-gi~v~~~~~-----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l 395 (397)
T 3f9t_A 327 ENNFKPVIEPILNIVAIEDED--YKEVCKKLRDR-GIYVSVCNC-----VKALRIVVMPHIKREHIDNFIEILNSIK 395 (397)
T ss_dssp HTTCCBSSCCSSSEEEEECTT--HHHHHHHHHHT-TCBCEECSS-----SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HCCCEEEcCCCccEEEEEeCC--HHHHHHHHHhC-CeEEeccCC-----CCEEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 888886666678889998874 56677776665 999999763 579999985 48999999999999875
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=264.24 Aligned_cols=327 Identities=15% Similarity=0.145 Sum_probs=234.7
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC----CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG----AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
+.+.|+.+.++ ++|+.+.+++.+.+..... .....|. ...+..++|+++++++ ++++++|++|+|+++++
T Consensus 26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGA-STVGAHPSARRSAAVLDAAREAVADLV----NADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGCC-CCCHHHHHHHHHHHHHCCS-SSCSSSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCC-CCCCccHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCChHHHH
Confidence 47888888776 6788999999998875321 1112232 2356788999999987 77889999999999999
Q ss_pred HHH-HHh---cCCCCEEEEeCCCchhhHhHHHH----hccccccccccCccceeEEeecCCCCCccCCCCC-----CCCc
Q 013521 149 SRL-QML---LGSNVTVAVQDPSFPAYIDTSVI----VGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRT 215 (441)
Q Consensus 149 ~~l-~~l---~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~ 215 (441)
.++ ..+ +++||+|+++.|+|+++...+.. .| .+++.++.+++++ ..+++. .+++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g------------~~v~~v~~~~~~~-~~d~~~l~~~l~~~~ 166 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYG------------AKVKWAEVDIETG-ELPTWQWESLISKST 166 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHB------------CEEEEECCCTTTC-CCCGGGHHHHCCTTE
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcC------------CeEEEEecCcccC-CcCHHHHHHHhCCCc
Confidence 984 555 68999999999999987666554 46 5888898873222 233332 3578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
++|++++|+||||.+++ +++|.++|+++|+++|+|++|+... .+..+..+ +.++++.|+||.+| ++ +
T Consensus 167 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~----~~d~~~~s~~K~~g-~~--~ 233 (406)
T 3cai_A 167 RLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPY---RLLDIRET----DADVVTVNAHAWGG-PP--I 233 (406)
T ss_dssp EEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTT---CCCCHHHH----CCSEEEEEGGGGTS-CS--C
T ss_pred eEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCC---CCCCchhc----CCCEEEeehhhhcC-CC--c
Confidence 99999999999999999 7899999999999999999998321 12223222 34589999999886 65 9
Q ss_pred E-EEEeeccccccCCchhHHHHHHHH---------hhhcCCCcHHHHHHHHHhcC---CCc----------H-HHHHHHH
Q 013521 296 G-WTVVPEELRYSNGYPVIKDFNRIV---------CTCFNGASNIVQAGGLACLS---PDG----------F-QALRTVI 351 (441)
Q Consensus 296 G-~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~l~---~~~----------~-~~~~~~~ 351 (441)
| |++++++++ +.+.... .....+.+...+.++.++++ +.+ + .++++++
T Consensus 234 G~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~ 305 (406)
T 3cai_A 234 GAMVFRDPSVM--------NSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSAD 305 (406)
T ss_dssp EEEEESCHHHH--------HTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHH
T ss_pred CeEEEEehHHH--------hhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Confidence 9 999988763 1111110 11123345555444434443 211 1 1568889
Q ss_pred HHHHHHHHHHHHHHHhC-CCeeeCCC--CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCC------CcCCC-CCCeEEE
Q 013521 352 DYYKENAKIIVDAFQSL-GLKVNGGK--NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGS------GFGPG-GNEHIRV 421 (441)
Q Consensus 352 ~~~~~~~~~l~~~L~~~-g~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~------~f~~~-~~~~iRl 421 (441)
++++++++++.+.|+++ ++++..+. .+.++++.+++.+..++.+.|.+ +||.+.+|+ .|+.. +.+++||
T Consensus 306 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gi~v~~g~~~~~~~~~g~~~~~~~iRi 384 (406)
T 3cai_A 306 AYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLAD-NGILAIANTGSRVLDVLGVNDVGGAVTV 384 (406)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHH-TTEECEECCSCHHHHHHTTTTTTCCEEE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHH-CCcEEecCChHHHHHHcCCCCCCCeEEE
Confidence 99999999999999987 78776543 24478888876566677777654 699999987 34322 3578999
Q ss_pred Eeec--CHHHHHHHHHHHHhh
Q 013521 422 SAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 422 s~~~--~~~~~~~~l~~l~~~ 440 (441)
++.. +++++++++++|+++
T Consensus 385 s~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 385 GLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp ECCTTCCHHHHHHHHHHHHTC
T ss_pred EeecCCCHHHHHHHHHHHHHh
Confidence 9854 789999999999875
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=268.94 Aligned_cols=316 Identities=14% Similarity=0.134 Sum_probs=230.1
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC--cCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHHHHH-HHH
Q 013521 78 GIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE--QGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSDISR-LQM 153 (441)
Q Consensus 78 ~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~al~~-l~~ 153 (441)
..+.++.++++.+.+++.+.+. .+|.+. ....++|+++|+++ +.+++ +|++|+|+++++.+ +..
T Consensus 21 ~~~~~p~~~~~~v~~a~~~~~~--------~~~~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~g~t~al~~~~~~ 88 (396)
T 2ch1_A 21 MMGPGPSNCSKRVLTAMTNTVL--------SNFHAELFRTMDEVKDGLRYIF----QTENRATMCVSGSAHAGMEAMLSN 88 (396)
T ss_dssp CCSSSSCCCCHHHHHHTTSCCC--------CTTCHHHHHHHHHHHHHHHHHH----TCCCSCEEEESSCHHHHHHHHHHH
T ss_pred eecCCCCCCCHHHHHHhccccc--------cCCChhHHHHHHHHHHHHHHHh----CCCCCcEEEECCcHHHHHHHHHHH
Confidence 3444455677887777765331 134332 24789999999997 77777 89999999999998 567
Q ss_pred hcCCCCEEEEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC-CccEEEEcCCCC
Q 013521 154 LLGSNVTVAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS-RTDIIFFCSPNN 225 (441)
Q Consensus 154 l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~-~~~~v~i~~p~N 225 (441)
++++||+|++++|+|+++. ..++..| .+++.++.+.+ +..+++. .+ ++++|++++|+|
T Consensus 89 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~v~~~~~~n 154 (396)
T 2ch1_A 89 LLEEGDRVLIAVNGIWAERAVEMSERYG------------ADVRTIEGPPD--RPFSLETLARAIELHQPKCLFLTHGDS 154 (396)
T ss_dssp HCCTTCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTT--SCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred hcCCCCeEEEEcCCcccHHHHHHHHHcC------------CceEEecCCCC--CCCCHHHHHHHHHhCCCCEEEEECCCC
Confidence 7899999999999999984 3566677 58888888653 2333322 13 789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~ 305 (441)
|||.+++ +++|+++|++||++||+||+|. +. ..+..+..+ +..+++.|++|.++ ++.++||++++++.+
T Consensus 155 ptG~~~~---~~~i~~l~~~~~~~li~Dea~~-~g--~~~~~~~~~----~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~ 223 (396)
T 2ch1_A 155 SSGLLQP---LEGVGQICHQHDCLLIVDAVAS-LC--GVPFYMDKW----EIDAVYTGAQKVLG-APPGITPISISPKAL 223 (396)
T ss_dssp TTTEECC---CTTHHHHHHHTTCEEEEECTTT-BT--TBCCCTTTT----TCCEEECCCC-CCC-CCSSCEEEEECHHHH
T ss_pred CCceecC---HHHHHHHHHHcCCEEEEEcccc-cc--CCccchhhc----CcCEEEEcCCcccc-CCCCeEEEEECHHHH
Confidence 9999999 8899999999999999999998 22 112222222 22477899999875 556679999987663
Q ss_pred ccCCchhHHHHHH-----------------HH------hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 013521 306 YSNGYPVIKDFNR-----------------IV------CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 306 ~~~~~~~~~~~~~-----------------~~------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 362 (441)
+.+.. .. .....+.+...|.++.++++.....++++++++++++++.+.
T Consensus 224 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 295 (396)
T 2ch1_A 224 --------DVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILY 295 (396)
T ss_dssp --------HHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred --------HhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22211 00 112234677778777777763222456788999999999999
Q ss_pred HHHHhCCCeeeCCCC----ceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-e--cCHHHHHHHH
Q 013521 363 DAFQSLGLKVNGGKN----APYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-F--GHREYISEAC 434 (441)
Q Consensus 363 ~~L~~~g~~~~~~~~----~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~--~~~~~~~~~l 434 (441)
+.|+++|+++..+.+ +.++|++++ +.+..++.+.|++++||.+.+|..+. .++++||++ . .+++++++++
T Consensus 296 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~e~i~~~~ 373 (396)
T 2ch1_A 296 EGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPT--FGKAWRVGIMGECSTVQKIQFYL 373 (396)
T ss_dssp HHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGG--TTTEEEEECCGGGCSHHHHHHHH
T ss_pred HHHHHCCCeeccCCccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc--CCCEEEEECCCCcCCHHHHHHHH
Confidence 999988888776543 248899986 55677788888776799999987542 467999998 3 2789999999
Q ss_pred HHHHhh
Q 013521 435 RRLKNF 440 (441)
Q Consensus 435 ~~l~~~ 440 (441)
++|+++
T Consensus 374 ~~l~~~ 379 (396)
T 2ch1_A 374 YGFKES 379 (396)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=268.58 Aligned_cols=313 Identities=13% Similarity=0.101 Sum_probs=222.8
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC--CcEEEcCCcHHHHHHHHHhcCCCCE
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG--DEIFISDGAQSDISRLQMLLGSNVT 160 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~--~~I~~t~G~~~al~~l~~l~~~gd~ 160 (441)
+.++++.+.+++.+.+.. . ..+.......++++.+++++ ++++ ++|++|+|+++++.++..++++||+
T Consensus 10 p~~~~~~v~~a~~~~~~~-----~-~~~~~~~~~~~~~~~la~~~----~~~~~~~~v~~~~g~t~al~~~~~~~~~gd~ 79 (384)
T 3zrp_A 10 PTTIKEDVLVAGLENNVG-----F-TSKEFVEALAYSLKGLRYVM----GASKNYQPLIIPGGGTSAMESVTSLLKPNDK 79 (384)
T ss_dssp CSCCCHHHHHHTTCCSCC-----T-TSHHHHHHHHHHHHHHHHHH----TCCTTSEEEEEESCHHHHHHHGGGGCCTTCE
T ss_pred CCCCCHHHHHHhhccccc-----c-ccHHHHHHHHHHHHHHHHHh----CCCCCCcEEEEcCCcHHHHHHHHhhcCCCCE
Confidence 456778887777664321 1 11111335566777777775 7776 8999999999999954667899999
Q ss_pred EEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC---CCCccEEEEcCCCCccccCCCHH
Q 013521 161 VAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST---TSRTDIIFFCSPNNPTGHAATWQ 234 (441)
Q Consensus 161 Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~---~~~~~~v~i~~p~NPtG~~~~~~ 234 (441)
|++++|+|++ +...+...| .+++.++.+.++.++++ +++ ..++++|++++|+||||.+++
T Consensus 80 vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-- 145 (384)
T 3zrp_A 80 ILVVSNGVFGDRWEQIFKRYP------------VNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP-- 145 (384)
T ss_dssp EEEECSSHHHHHHHHHHTTSS------------CEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC--
T ss_pred EEEecCCcchHHHHHHHHHcC------------CcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc--
Confidence 9999999976 444455556 58899998764333222 211 137999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHH
Q 013521 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIK 314 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~ 314 (441)
+++|.++|++||+++|+|++|+.... +..+.. .+.++++.|+||+++ ++.++||++++++++ +
T Consensus 146 -l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~--------~ 208 (384)
T 3zrp_A 146 -VKDVINKIRKYVELIVVDGVSSVGAE---EVKAEE----WNVDVYLTASQKALG-SAAGLGLLLLSPKAL--------S 208 (384)
T ss_dssp -HHHHHHHHGGGEEEEEEECTTTTTTS---CCCTTT----TTCSEEEEETTSTTC-CCSSEEEEEECHHHH--------H
T ss_pred -HHHHHHHHHhcCCEEEEECcccccCc---cccccc----cCCCEEEecCccccc-CCCceEEEEECHHHH--------H
Confidence 88899999999999999999874221 122211 234699999999885 456699999998874 2
Q ss_pred HH-------------HHHHh---------hh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013521 315 DF-------------NRIVC---------TC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLK 371 (441)
Q Consensus 315 ~~-------------~~~~~---------~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 371 (441)
.+ ..... .. +.+.+...+.++.+++.......+++++++++++++++.+.|+++|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 288 (384)
T 3zrp_A 209 ILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLE 288 (384)
T ss_dssp HHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 22 11111 01 124455555555555542111236888999999999999999988888
Q ss_pred eeCCC----CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 372 VNGGK----NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 372 ~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+..+. .++++|+.+++.+..++.+.+.++ ||.+.+|..+.. +++||++. .+++++++++++|+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~---~~iRi~~~~~~~~e~i~~~~~~l~~~ 359 (384)
T 3zrp_A 289 IVARRPESYSNTVTGVILKVADPQKVLAGTVNE-GVEFAPGVHPAF---KYFRIGHMGWVTPNDAIIAISVIERT 359 (384)
T ss_dssp BSCSSGGGBCSSEEEEECSSSCHHHHHHHHHTT-TCCCEECCCTTC---CEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred EccCcccccCccEEEEECCCCCHHHHHHHHHHC-CEEEecCCCCCc---CEEEEeccccCCHHHHHHHHHHHHHH
Confidence 77655 477889999875667777777665 999999874322 89999974 5899999999999875
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=267.19 Aligned_cols=330 Identities=14% Similarity=0.083 Sum_probs=234.9
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCC--CCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVK--GYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++||+.+++ +++.++.+.+++.+.+.++.... ....|+......++++.+++++ +.+ +.|++++| +++
T Consensus 58 g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-~~i~~~sG-t~a 131 (409)
T 3kki_A 58 SPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT----GFD-ECLLSQSG-WNA 131 (409)
T ss_dssp CTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH----TCS-EEEEESCH-HHH
T ss_pred CCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh----CCC-eEEEecch-HHH
Confidence 456899998874 46678999999999998753211 1122333445678888888886 543 35666666 577
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC---CCCccEEEEcCC
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST---TSRTDIIFFCSP 223 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~---~~~~~~v~i~~p 223 (441)
+.. +..++++||.|+++.|+|+++...+...| .+++.++..+ ..++++ ..++++|++++|
T Consensus 132 ~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~d----~~~le~~l~~~~~~~vi~~~~ 195 (409)
T 3kki_A 132 NVGLLQTICQPNTNVYIDFFAHMSLWEGARYAN------------AQAHPFMHNN----CDHLRMLIQRHGPGIIVVDSI 195 (409)
T ss_dssp HHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTT------------CEEEEECTTC----HHHHHHHHHHHCSCEEEEESB
T ss_pred HHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcC------------CeEEEecCCC----HHHHHHHHHhcCCeEEEECCC
Confidence 775 77888999999999999999999888888 4777766421 111221 135789999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc-cccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI-YEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~-~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
+||||.+++ +++|+++|++||++||+||+|..+.++...... ...+..++.++++.||||.++.+ .||+++++
T Consensus 196 ~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~ 269 (409)
T 3kki_A 196 YSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR---AGAIWCNN 269 (409)
T ss_dssp CTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS---CEEEEESS
T ss_pred CCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC---ceEEEECH
Confidence 999999999 889999999999999999999875443221122 22222234569999999999855 49999998
Q ss_pred cccccCCchhHHHHHHHH-hh-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 303 ELRYSNGYPVIKDFNRIV-CT-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
+++ +.+.... .. .....+.+.+.++.+.++. .+..++++++++++++++.+.|++.|+.+. ..+++
T Consensus 270 ~~~--------~~~~~~~~~~~~~~~~~~~~~aa~~aal~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~ 337 (409)
T 3kki_A 270 EVN--------RCVPFISYPAIFSSTLLPYEAAGLETTLEI--IESADNRRQHLDRMARKLRIGLSQLGLTIR--SESQI 337 (409)
T ss_dssp SGG--------GTHHHHCHHHHHSBCCCHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHTTTCCCC--CSSSE
T ss_pred HHH--------HHHHHhCcCccccCCCcHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHcCCccC--CCCCE
Confidence 874 2233211 11 1223455666666666642 222367888999999999999999887765 47889
Q ss_pred EEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCc-CCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFPGS-SSWDVFAEILEKTHILTIPGSGF-GPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f-~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
+|+.++.. ...++...|+++ ||.+.|+..+ .+.+.+++||++. .+++++++++++|++++
T Consensus 338 ~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l 401 (409)
T 3kki_A 338 IGLETGDERNTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAV 401 (409)
T ss_dssp EEEEEESHHHHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 99998632 345577777766 9999986544 2445789999984 48999999999998763
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=266.00 Aligned_cols=321 Identities=10% Similarity=0.038 Sum_probs=226.7
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHH
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQM 153 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~ 153 (441)
+.|..+.+ .+.|+.+.+++.+.+.. ...|....+..++|+++++++ ++++++|++|+|+++++.+ +..
T Consensus 10 ~yl~~~~~-~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~t~g~t~a~~~~~~~ 78 (392)
T 2z9v_A 10 VITLTAGP-VNAYPEVLRGLGRTVLY------DYDPAFQLLYEKVVDKAQKAM----RLSNKPVILHGEPVLGLEAAAAS 78 (392)
T ss_dssp SEECSSSC-CCCCHHHHHHTTSCCCC------TTSHHHHHHHHHHHHHHHHHT----TCSSCCEEESSCTHHHHHHHHHH
T ss_pred ceeecCCC-cCCCHHHHHHHhccccc------cccHHHHHHHHHHHHHHHHHh----CCCCCEEEEeCCchHHHHHHHHH
Confidence 45554433 46778888887765431 111222345778899999886 7778999999999999998 566
Q ss_pred hcCCCCEEEEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC----CCCccEEEEcCCCCc
Q 013521 154 LLGSNVTVAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST----TSRTDIIFFCSPNNP 226 (441)
Q Consensus 154 l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~----~~~~~~v~i~~p~NP 226 (441)
++++||+|++++|+|+++. ..+...| .+++.++.+.++.++++ +++ .+++++|++++|+||
T Consensus 79 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~np 146 (392)
T 2z9v_A 79 LISPDDVVLNLASGVYGKGFGYWAKRYS------------PHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTP 146 (392)
T ss_dssp HCCTTCCEEEEESSHHHHHHHHHHHHHC------------SCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGG
T ss_pred hcCCCCEEEEecCCcccHHHHHHHHHcC------------CceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCC
Confidence 7899999999999998863 3334456 48888888764322222 111 257899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
||.+++ +++|.++|++||++||+|++|+... .+..+..+ +.++++.|+||+++ ++.++||++++++++
T Consensus 147 tG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~----~~d~~~~s~sK~~~-~~~g~G~l~~~~~~~- 214 (392)
T 2z9v_A 147 SGTINP---IDAIGALVSAHGAYLIVDAVSSFGG---MKTHPEDC----KADIYVTGPNKCLG-APPGLTMMGVSERAW- 214 (392)
T ss_dssp GTEECC---HHHHHHHHHHTTCEEEEECTTTBTT---BSCCGGGG----TCSEEEECSSSTTC-CCSCCEEEEECHHHH-
T ss_pred Cceecc---HHHHHHHHHHcCCeEEEEcccccCC---cccccccc----cceEEEecCccccc-CCCceeEEEECHHHH-
Confidence 999999 7899999999999999999998321 12223222 34589999999654 334469999988763
Q ss_pred cCCchhHHHHHHHH--------------------hhhcCCCcHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHHHH
Q 013521 307 SNGYPVIKDFNRIV--------------------CTCFNGASNIVQAGGLACLSPDGFQA-LRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 307 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~L 365 (441)
+.+.... .....+.+...+.++.++++. ..++ +++++++++++++++.+.|
T Consensus 215 -------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 215 -------AKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL-YLNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp -------HHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHH
Confidence 3332110 011223455555555555542 1123 5788899999999999999
Q ss_pred HhCCCeeeCCC----CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-e--cCHHHHHHHHHHH
Q 013521 366 QSLGLKVNGGK----NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-F--GHREYISEACRRL 437 (441)
Q Consensus 366 ~~~g~~~~~~~----~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~--~~~~~~~~~l~~l 437 (441)
+++|+++..++ .++++|+.++ +.+..++.+.|.+++||.+.||..|. .++++||++ . .+++++++++++|
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~--~~~~lRi~~~~~~~~~~~i~~~~~~l 364 (392)
T 2z9v_A 287 TAMGLSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGET--LGKLTRIGHMGPTAQPIYAIAALTAL 364 (392)
T ss_dssp HHTTCCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred HHcCCeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCC--CCCeEEEeCcccccCHHHHHHHHHHH
Confidence 88888776523 4678999996 45667777777765699999998643 467999995 4 5899999999999
Q ss_pred Hhh
Q 013521 438 KNF 440 (441)
Q Consensus 438 ~~~ 440 (441)
+++
T Consensus 365 ~~~ 367 (392)
T 2z9v_A 365 GGA 367 (392)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=259.82 Aligned_cols=324 Identities=11% Similarity=0.075 Sum_probs=231.7
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
+.+++|+.+.++ ++++.+.+++.+.+. +|.+..|..++++++++++.+.++.++++|++|+|+++++.+
T Consensus 13 p~~i~l~~~~~~-~~~~~v~~a~~~~~~---------~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~ 82 (359)
T 1svv_A 13 PKPYSFVNDYSV-GMHPKILDLMARDNM---------TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIA 82 (359)
T ss_dssp --CEECSCSCSS-CCCHHHHHHHHHHTT---------CCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHH
T ss_pred CeeEEecCCCcC-CCCHHHHHHHHHHHh---------hccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHH
Confidence 358999987766 678899999998764 255556778888999988887667888999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHh--HHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC-------Ccc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYID--TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS-------RTD 216 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~-------~~~ 216 (441)
+..++++||+|++++|+|+++.. .+...| .+++.++.+ + +..+++. .+ +++
T Consensus 83 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~-~--~~~d~~~l~~~l~~~~~~~~~~~~ 147 (359)
T 1svv_A 83 CSLALRPWEAVIATQLGHISTHETGAIEATG------------HKVVTAPCP-D--GKLRVADIESALHENRSEHMVIPK 147 (359)
T ss_dssp HHHHCCTTEEEEEETTSHHHHSSTTHHHHTT------------CCEEEECCT-T--SCCCHHHHHHHHHHSCSTTSCEEE
T ss_pred HHHHhCCCCEEEEcccchHHHHHHHHHhcCC------------CeeEEEeCC-C--CeecHHHHHHHHHHHHhccCCCce
Confidence 66778999999999999999877 366677 588888875 2 2233221 12 389
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
+|++++| ||||.++|.+++++|+++|++||+++|+||+|..|.....+.....+.-.....+++.|++|..+ ..++|
T Consensus 148 ~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~--~~~~g 224 (359)
T 1svv_A 148 LVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG--MFGEA 224 (359)
T ss_dssp EEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC--SSCEE
T ss_pred EEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCC--CCceE
Confidence 9999999 79999999999999999999999999999999654332211111110000122378889999744 35689
Q ss_pred EEEeeccccccCCchhHHHHHHHHh-hhc-CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVC-TCF-NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
+++++++++ +.+..... ... ...+.....++.+++.+. .+++++++++++++++.+.|+..|+++..
T Consensus 225 ~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 293 (359)
T 1svv_A 225 LIILNDALK--------PNARHLIKQRGALMAKGWLLGIQFEVLMKDN---LFFELGAHSNKMAAILKAGLEACGIRLAW 293 (359)
T ss_dssp EEECSGGGC--------TTHHHHHHHTTCCCTTTHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred EEEEcccHH--------HHHHHHHhcCCcccccchhhHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhccCCeEEcc
Confidence 999988774 22332211 111 111222233334556542 34778889999999999999545888876
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
+.+++|+|++++ .++.+++++++||.+.+. .+.+++++||++ ..+++++++++++|++++
T Consensus 294 ~~~~~~~~~~~~----~~~~~~l~~~~gi~v~~~---~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 355 (359)
T 1svv_A 294 PSASNQLFPILE----NTMIAELNNDFDMYTVEP---LKDGTCIMRLCTSWATEEKECHRFVEVLKRLV 355 (359)
T ss_dssp CCSSSEECBEEE----HHHHHHHTTTEECEEEEE---ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC-
T ss_pred CCccceEEEEcC----HHHHHHHHHhcCEEEEec---ccCCCceEEEEccCcCCHHHHHHHHHHHHHHH
Confidence 778899998875 467777776559998321 123467999986 358999999999998764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=262.46 Aligned_cols=336 Identities=12% Similarity=0.051 Sum_probs=222.5
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh
Q 013521 76 RLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML 154 (441)
Q Consensus 76 ~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l 154 (441)
.|+.+.. .++|+.+.+++.+.+..... .....|....+..++.+.+.+++.+.+++++++|++|+|+++++.+ +..+
T Consensus 3 yld~~~~-~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~ 80 (382)
T 4hvk_A 3 YFDYTSA-KPVDERILEAMLPYMTESFG-NPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp BCBTTTC-CCCCHHHHHHHHHHHHTSCC-CTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHH
T ss_pred eecCCCc-CCCCHHHHHHHHHHHHhhcC-CCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHh
Confidence 3444433 35678999999998875321 1111121112223333334443333358888999999999999997 5666
Q ss_pred c----CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCcc
Q 013521 155 L----GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPT 227 (441)
Q Consensus 155 ~----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPt 227 (441)
+ ++||+|+++.|+|+++...+..++..| .+++.++.+.++.++++ +++ .++++++++++|+|||
T Consensus 81 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~npt 151 (382)
T 4hvk_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQG---------FEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEI 151 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHHHTT---------CEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTT
T ss_pred hhhhcCCCCEEEECCCCcHHHHHHHHHHHhcC---------CEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCc
Confidence 6 899999999999999987776652222 48899998754333221 221 3678999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS 307 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~ 307 (441)
|.+++ +++|+++|++||+ +|+|++|+.... +..+... +.++++.|+||.+|.+| +|+++++++....
T Consensus 152 G~~~~---~~~i~~l~~~~~~-li~D~a~~~~~~---~~~~~~~----~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~ 218 (382)
T 4hvk_A 152 GTIQP---VEEISEVLAGKAA-LHIDATASVGQI---EVDVEKI----GADMLTISSNDIYGPKG--VGALWIRKEAKLQ 218 (382)
T ss_dssp CBBCC---HHHHHHHHSSSSE-EEEECTTTBTTB---CCCHHHH----TCSEEEEESGGGTSCTT--CEEEEEETTCCCC
T ss_pred eeeCC---HHHHHHHHHHcCE-EEEEhHHhcCCC---CCCchhc----CCCEEEEeHHHhcCCCc--eEEEEEcCccCcC
Confidence 99999 7789999999999 999999873211 2222222 34599999999887555 7787777654211
Q ss_pred CCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCC---ceEEEE
Q 013521 308 NGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKN---APYVWV 383 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---~~~~~~ 383 (441)
.. .............+.+...+.++.+++. ...+++++.+++++++++.+.+.|+++ ++.+..++. +.++++
T Consensus 219 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 294 (382)
T 4hvk_A 219 PV---ILGGGQENGLRSGSENVPSIVGFGKAAE-ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNV 294 (382)
T ss_dssp CS---SCSSCTGGGTSCSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEE
T ss_pred cc---cccCCCcCccccCCcCHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEE
Confidence 00 0000000111223345566665555554 222567889999999999999999987 787765443 357888
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCCCC-----------------CCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGPGG-----------------NEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-----------------~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
.+++.+..++.+.+.+ +||.+.+|..|.... +++|||++. .+++++++++++|+++
T Consensus 295 ~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~ 369 (382)
T 4hvk_A 295 RFSYIEGESIVLSLDM-AGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp EETTCCHHHHHHHHHH-TTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHH-CCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 8876666777766654 599999998876543 589999985 3789999999999875
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=266.13 Aligned_cols=318 Identities=12% Similarity=0.134 Sum_probs=228.5
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC--CCcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG--AEQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~al~ 149 (441)
..+++..|. .++|+.+.+++.+.+.. +|. +..+..++|+.+++++ +++++ +|++|+|+++++.
T Consensus 19 ~~~~~~~g~--~~~~~~v~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~----g~~~~~~i~~~~g~t~a~~ 84 (393)
T 2huf_A 19 NKLLMGPGP--SNAPQRVLDAMSRPILG--------HLHPETLKIMDDIKEGVRYLF----QTNNIATFCLSASGHGGME 84 (393)
T ss_dssp CCEECSSSC--CCCCHHHHHHTTSCCCC--------TTSHHHHHHHHHHHHHHHHHH----TCCCSEEEEESSCHHHHHH
T ss_pred CeEEecCCC--CCCCHHHHHHHHhhhcc--------CCCHHHHHHHHHHHHHHHHHh----CCCCCcEEEEcCcHHHHHH
Confidence 457776663 56778888877764421 232 2356788888888886 77775 8999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC-CccEEEE
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS-RTDIIFF 220 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~-~~~~v~i 220 (441)
+ +..++++||+|++++|+|+++. ..++..| .+++.++.++++ ..+++. .+ ++++|++
T Consensus 85 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~--~~d~~~l~~~i~~~~~~~v~~ 150 (393)
T 2huf_A 85 ATLCNLLEDGDVILIGHTGHWGDRSADMATRYG------------ADVRVVKSKVGQ--SLSLDEIRDALLIHKPSVLFL 150 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTC--CCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHhCCCCEEEEECCCcchHHHHHHHHHcC------------CeeEEEeCCCCC--CCCHHHHHHHHhccCCcEEEE
Confidence 8 6677899999999999998852 2334456 488888886543 233221 23 7899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCccc-CCccceeEEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFA-GFTGVRLGWTV 299 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-~~~G~r~G~l~ 299 (441)
++|+||||.+++ +++|+++|++||+++|+|+++... ..+..+.. .+.++++.|+||++ |.+|+ ||++
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~~---~~~~~~~~----~~~d~~~~s~sK~l~g~~G~--G~~~ 218 (393)
T 2huf_A 151 TQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASLG---GAPMFMDR----WEIDAMYTGSQKVLGAPPGI--TPVS 218 (393)
T ss_dssp ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBT---TBCCCTTT----TTCSEEECCSSSTTCCCSSC--EEEE
T ss_pred EccCCCccccCC---HHHHHHHHHHcCCEEEEEcccccC---CCCcchhh----cCccEEEECCCcccccCCCe--EEEE
Confidence 999999999999 889999999999999999998631 11222211 24568999999974 55675 9999
Q ss_pred eeccccccCCchhHHHHHHHH----h-------------------hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013521 300 VPEELRYSNGYPVIKDFNRIV----C-------------------TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE 356 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~----~-------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 356 (441)
++++++ +.+.... . ....+.+...+.++.++++......+++.++++++
T Consensus 219 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 290 (393)
T 2huf_A 219 FSHRAV--------ERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHED 290 (393)
T ss_dssp ECHHHH--------HHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ECHHHH--------HHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 987763 3333210 0 01123455666655556542111236778899999
Q ss_pred HHHHHHHHHHhCCCeeeCCC---CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-e--cCHHH
Q 013521 357 NAKIIVDAFQSLGLKVNGGK---NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-F--GHREY 429 (441)
Q Consensus 357 ~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~--~~~~~ 429 (441)
+++++.+.|+++|+++..+. .++++|++++ +.+..++.+.|++++||.+.+|..|. .++++||++ . .++++
T Consensus 291 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~--~~~~~Ri~~~~~~~~~e~ 368 (393)
T 2huf_A 291 CAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPT--AGQVFRIGLMGQNATTER 368 (393)
T ss_dssp HHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCSHHH
T ss_pred HHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc--cCCEEEEEcccCcCCHHH
Confidence 99999999998888776543 3458889987 55667788888776799999998663 367999998 5 36888
Q ss_pred HHHHHHHHHhh
Q 013521 430 ISEACRRLKNF 440 (441)
Q Consensus 430 ~~~~l~~l~~~ 440 (441)
+++++++|+++
T Consensus 369 i~~~~~~l~~~ 379 (393)
T 2huf_A 369 VDRVLQVFQEA 379 (393)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=261.14 Aligned_cols=327 Identities=11% Similarity=0.090 Sum_probs=228.9
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC-C-cCcHHHHHHHHHHHhhhCCC--CCCcEEEcCCcHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA-E-QGNMALRTAIADKFYKDMGI--EGDEIFISDGAQSDI 148 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~-~-~g~~~lr~~ia~~l~~~~~~--~~~~I~~t~G~~~al 148 (441)
++++|+.| | .+.|+.+.+++.+.+ . +.|+. . .+..++|+++|+++ +. ++++|++|+|+++++
T Consensus 4 ~~~~~~~g-p-~~~~~~v~~a~~~~~------~--~~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~~~g~t~a~ 69 (366)
T 1m32_A 4 NYLLLTPG-P-LTTSRTVKEAMLFDS------C--TWDDDYNIGVVEQIRQQLTALA----TASEGYTSVLLQGSGSYAV 69 (366)
T ss_dssp -CEECSSS-S-CCCCHHHHHTTCCCC------C--TTSHHHHTTTHHHHHHHHHHHH----CSSSSEEEEEEESCHHHHH
T ss_pred ccccccCC-C-cCCCHHHHHHHhhhh------c--CCCHHHHHHHHHHHHHHHHHHh----CCCCcCcEEEEecChHHHH
Confidence 36889988 3 457788888876632 1 12211 1 68899999999997 42 235899999999999
Q ss_pred HH-HHHhcCCCCEEEEeC-CCchh-hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC----CCCccEEEE
Q 013521 149 SR-LQMLLGSNVTVAVQD-PSFPA-YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST----TSRTDIIFF 220 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~-p~y~~-~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~----~~~~~~v~i 220 (441)
.+ +..++++||+|++.+ ++|+. +...+...| .+++.++.+.+..++++ +++ ..++++|++
T Consensus 70 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~ 137 (366)
T 1m32_A 70 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMG------------IAHHAYDCGEVARPDVQAIDAILNADPTISHIAM 137 (366)
T ss_dssp HHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHT------------CCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEE
Confidence 98 566778999988776 55554 556667777 57888888653222221 111 236889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
++|+||||.+++ +++|+++|++||+++|+||+|+.... +.++.. .+.++++.|+||+++ ++.++||+++
T Consensus 138 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~~----~~~di~~~s~~K~~~-~~~g~G~~~~ 206 (366)
T 1m32_A 138 VHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGI---PMDIAA----LHIDYLISSANKCIQ-GVPGFAFVIA 206 (366)
T ss_dssp ESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCTTT----TTCSEEEEESSSTTC-CCSSEEEEEE
T ss_pred ecccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCc---Cccccc----cCccEEEecCccccc-CCCceEEEEE
Confidence 999999999999 78999999999999999999984322 222211 234699999999874 3456899999
Q ss_pred eccccccCCch-------hHHHHHHHHh--h-hcCCCcHHHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHHHHhC
Q 013521 301 PEELRYSNGYP-------VIKDFNRIVC--T-CFNGASNIVQAGGLACLSPDGFQA--LRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 301 ~~~~~~~~~~~-------~~~~~~~~~~--~-~~~~~~~~~~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+++++..-... ....+..... . ...+.+.+.+.++.++++.. ..+ +++++++++++++++.+.|+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~g~~~~~~~~~~~~~~~l~~~L~~~ 285 (366)
T 1m32_A 207 REQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL-AKEGGVAARHQRYQQNQRSLVAGMRAL 285 (366)
T ss_dssp EHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH-HHccCHhHHHHHHHHHHHHHHHHHHHC
Confidence 98875221000 0011111101 0 11346667776666666521 122 5778899999999999999988
Q ss_pred CCeeeCC---CCceEEEEEcC---CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 369 GLKVNGG---KNAPYVWVQFP---GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 369 g~~~~~~---~~~~~~~~~~~---~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
|+++..+ ..++++|+.++ +.+..++.+.+.++ ||.+.||..| +.+++|+++. .+++++++++++|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~---~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 361 (366)
T 1m32_A 286 GFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQ-GFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTA 361 (366)
T ss_dssp TCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHT-TEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHC-CEEEECCcCC---CCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 8776553 35679999997 34566777777765 9999999876 4679999985 3789999999999886
Q ss_pred C
Q 013521 441 L 441 (441)
Q Consensus 441 l 441 (441)
+
T Consensus 362 ~ 362 (366)
T 1m32_A 362 M 362 (366)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-32 Score=265.48 Aligned_cols=333 Identities=17% Similarity=0.148 Sum_probs=229.9
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHh--hccCCCCC--C--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCC
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAF--ALSTVKGY--K--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDG 143 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~--~~~~~~~~--~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G 143 (441)
.+++.+.|+.+.+. ++|+.+.+++.+.+. .....+.. . .|.......++++.+++++ ++++++|++|+|
T Consensus 19 ~~~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~~~~v~~~~g 93 (423)
T 3lvm_A 19 AMKLPIYLDYSATT-PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLV----GADPREIVFTSG 93 (423)
T ss_dssp -CCSSEECBTTTCC-CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEESS
T ss_pred ccCCCEeecCCCcC-CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHc----CCCCCeEEEeCC
Confidence 45678999988775 678889999988765 21100000 0 0111234466777777765 788899999999
Q ss_pred cHHHHHH-HHHhc----CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCc
Q 013521 144 AQSDISR-LQMLL----GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRT 215 (441)
Q Consensus 144 ~~~al~~-l~~l~----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~ 215 (441)
+++++.+ +..+. ++||.|+++.|+|+++...+..++..| .+++.++.++++.++++ +++ .+++
T Consensus 94 gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~ 164 (423)
T 3lvm_A 94 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREG---------FEVTYLAPQRNGIIDLKELEAAMRDDT 164 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTT---------CEEEEECCCTTSCCCHHHHHHHCCTTE
T ss_pred hHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcC---------CEEEEeccCCCCccCHHHHHHhcCCCc
Confidence 9999997 55555 389999999999999988775552111 58889988764332221 111 3578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+++++++|+||||.+++ +++|+++|++||++||+||+|+.... +..+.. .+.++++.|+||.+|.+| +
T Consensus 165 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~~----~~~di~~~s~sK~~g~~g--~ 232 (423)
T 3lvm_A 165 ILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL---PIDLSQ----LKVDLMSFSGHKIYGPKG--I 232 (423)
T ss_dssp EEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCTTT----SCCSEEEEESTTTTSCSS--C
T ss_pred EEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCC---CcChhh----cCCCEEEechHHhcCCCC--e
Confidence 99999999999999999 88899999999999999999874221 222221 234599999999887555 9
Q ss_pred EEEEeeccccccCCchhHHHHHHHH-------hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIV-------CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
||++++++.... +.... .....+.+...+.++.+++.. ...++++++++++++++.+.+.|+++
T Consensus 233 G~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~ 303 (423)
T 3lvm_A 233 GALYVRRKPRVR--------IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI-AKEEMATEMERLRGLRNRLWNGIKDI 303 (423)
T ss_dssp EEEEECBTTBCC--------CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred EEEEEeccccCC--------CCccccCCcccccccCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998776422 11110 112233556666655555541 12346888999999999999999888
Q ss_pred -CCeeeCCCC---ceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCC-----------------CCeEEEEee--c
Q 013521 369 -GLKVNGGKN---APYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGG-----------------NEHIRVSAF--G 425 (441)
Q Consensus 369 -g~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-----------------~~~iRls~~--~ 425 (441)
|+.+..+.+ +.++++.+++.+..++...+. + |.+.+|..|.+.. .+++||++. .
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~ 380 (423)
T 3lvm_A 304 EEVYLNGDLEHGAPNILNVSFNYVEGESLIMALK-D--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFT 380 (423)
T ss_dssp TTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTT-T--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTC
T ss_pred CCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHh-h--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCC
Confidence 888876543 356777776656666666544 4 9999998765421 489999985 3
Q ss_pred CHHHHHHHHHHHHhh
Q 013521 426 HREYISEACRRLKNF 440 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~ 440 (441)
+++++++++++|+++
T Consensus 381 t~e~i~~~~~~l~~~ 395 (423)
T 3lvm_A 381 TEEEIDYTIELVRKS 395 (423)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 789999999999875
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-31 Score=263.31 Aligned_cols=336 Identities=12% Similarity=0.112 Sum_probs=229.0
Q ss_pred CCCeEEeCCC---CCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG---DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g---~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|++.+ .+-...++.+.+++.+.+.+.. .....| +.....++++.+++++ + .++|++|+|++++
T Consensus 38 g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~--~~~~~~-~~~~~~~l~~~la~~~----~--~~~v~~~~gg~~a 108 (406)
T 4adb_A 38 GKEYIDFAGGIAVNALGHAHPELREALNEQASKFW--HTGNGY-TNEPVLRLAKKLIDAT----F--ADRVFFCNSGAEA 108 (406)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCS--CCCTTS-CCHHHHHHHHHHHHHS----S--CSEEEEESSHHHH
T ss_pred CCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcc--cccCCc-CCHHHHHHHHHHHhhC----C--CCeEEEeCcHHHH
Confidence 4568898877 3322357899999999887532 111233 3344566666666663 4 4599999999999
Q ss_pred HHH-HHHhcC-------CC-CEEEEeCCCchhhHhHHHHhccccccccc-cCccceeEEeecCCCCCccCCCCCCCCccE
Q 013521 148 ISR-LQMLLG-------SN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKE-TGKYRNIVYMNCRPENNFFPDLSTTSRTDI 217 (441)
Q Consensus 148 l~~-l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~ 217 (441)
+.+ +..++. +| |.|++++|+|+++...+...+.+..+... .....++..++.++-+.+...+ .+++++
T Consensus 109 ~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~~ 186 (406)
T 4adb_A 109 NEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALI--DDSTCA 186 (406)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTC--STTEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHh--cCCeEE
Confidence 997 454443 55 99999999999986666666543221100 0000244555543211111111 267888
Q ss_pred EEEcCCCCccccCC--CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 218 IFFCSPNNPTGHAA--TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 218 v~i~~p~NPtG~~~--~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
|+++ |+||||.++ +.+++++|+++|++||+++|+||+|.+|.+.+.+.+....+..++ ++ ||||.++ +|+|+
T Consensus 187 v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d-~~---t~sK~~~-~G~r~ 260 (406)
T 4adb_A 187 VIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD-LL---TTAKALG-GGFPV 260 (406)
T ss_dssp EEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS-EE---EECGGGG-TTSCC
T ss_pred EEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCC-EE---Eechhhc-CCCCe
Confidence 8887 999999998 999999999999999999999999998766554433333322223 22 6899999 99999
Q ss_pred EEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC----Ce
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG----LK 371 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~ 371 (441)
||++++++++ +.+.........+.+++.+.++.++++.... ++.+++++++++.+.+.|++.+ ..
T Consensus 261 G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 329 (406)
T 4adb_A 261 GALLATEECA--------RVMTVGTHGTTYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLF 329 (406)
T ss_dssp EEEEECHHHH--------HTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred EEEEEcHHHH--------hhhccCCcCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999988773 3333333334456788899888887763211 5677788888888888887652 11
Q ss_pred eeCCCCceEEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 372 VNGGKNAPYVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 372 ~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
......+.++|+.++.. ...++...++++ ||.+.|+. ++++|++ +..+++++++++++|++++
T Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~------~~~iRi~~~~~~~~e~i~~~~~~l~~~l 397 (406)
T 4adb_A 330 SEVRGLGLLIGCVLNADYAGQAKQISQEAAKA-GVMVLIAG------GNVVRFAPALNVSEEEVTTGLDRFAAAC 397 (406)
T ss_dssp EEEEEETTEEEEEECTTTTTCHHHHHHHHHHT-TEECEESS------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHC-CcEEeecC------CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 11223578899999742 466777777766 99999863 6799995 4668999999999998753
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-32 Score=268.20 Aligned_cols=333 Identities=14% Similarity=0.154 Sum_probs=225.7
Q ss_pred CCCeEEeCCC---CCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG---DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g---~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++|++.+ .+-...++.+.+++.+.+..... ....| +.....++++.+++++ + +++|++|+|++++
T Consensus 39 g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~gg~~a 109 (397)
T 2ord_A 39 GNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH--CSNLF-WNRPQMELAELLSKNT----F--GGKVFFANTGTEA 109 (397)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSC--CCTTS-EEHHHHHHHHHHHHTT----T--SCEEEEESSHHHH
T ss_pred CCEEEECCccccccccCCCCHHHHHHHHHHHHhccc--Ccccc-CCHHHHHHHHHHHHhc----C--CCeEEEeCCHHHH
Confidence 3468899876 33223678999999999876432 11123 3334566666666654 4 5899999999999
Q ss_pred HHH-HHHhcC------C-CCEEEEeCCCchhhHh-HHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCcc
Q 013521 148 ISR-LQMLLG------S-NVTVAVQDPSFPAYID-TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTD 216 (441)
Q Consensus 148 l~~-l~~l~~------~-gd~Vlv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~ 216 (441)
+.+ +..+.. + ++.|++.+|+|++... .+...|.+............++.++.++- .++++ .++++
T Consensus 110 ~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~----~~l~~~l~~~~~ 185 (397)
T 2ord_A 110 NEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNV----EDLRRKMSEDVC 185 (397)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCH----HHHHHHCCTTEE
T ss_pred HHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCH----HHHHHHhhcCeE
Confidence 987 444432 5 4789999999977544 66666642100000000012566665311 11211 25789
Q ss_pred EEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 217 IIFFCSPNNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 217 ~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+|++++||||||. +++.+++++|+++|++||+++|+||+|.++.+.+.+.++..+...++ + .||||.++ +|+|+
T Consensus 186 ~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d--~--~s~sK~~~-~G~r~ 260 (397)
T 2ord_A 186 AVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPD--V--LTTAKGLG-GGVPI 260 (397)
T ss_dssp EEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCS--E--EEECGGGG-TTSCC
T ss_pred EEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCC--e--eeeccccC-CCcCe
Confidence 9999999999999 99999999999999999999999999997765544333333332233 2 28899998 99999
Q ss_pred EEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCee-
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKV- 372 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~- 372 (441)
||++++++++ . +.........+.+.+.+.++.++++.... ++.+++++++++++.+.|++. ++..
T Consensus 261 G~~~~~~~~~-~--------l~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 328 (397)
T 2ord_A 261 GAVIVNERAN-V--------LEPGDHGTTFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVV 328 (397)
T ss_dssp EEEEECSTTC-C--------CCTTSSCCSSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred EEEEEchHhc-c--------cCCCCcCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 9999998763 1 11111222345688888888887753111 456788888888888888765 2332
Q ss_pred -eCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 373 -NGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 373 -~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
..+..|+++|++++. .+..++.+.+++ +||.+.||. ++++||++ ..+++++++++++|+++
T Consensus 329 ~~~~~~g~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~------~~~iRis~~~~~~~e~i~~~~~~l~~~ 393 (397)
T 2ord_A 329 ADVRGMGLMIGIQFREEVSNREVATKCFE-NKLLVVPAG------NNTIRFLPPLTVEYGEIDLAVETLKKV 393 (397)
T ss_dssp EEEEEETTEEEEEECTTSCHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEeEEEEEEECChHHHHHHHHHHHH-CCCEEccCC------CCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 112357889999974 346677777776 599999862 57899994 56899999999999875
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-32 Score=265.15 Aligned_cols=333 Identities=11% Similarity=0.087 Sum_probs=229.5
Q ss_pred CCCeEEeCCCCCCCC---CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQP---IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~---~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++|++.+.+... .++.+.+++.+.+..... ....| +..-..++++.+++++ + ++++++|+|++++
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~~gt~a 105 (392)
T 3ruy_A 35 GNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTL--TSRAF-HSDQLGPWYEKVAKLT----N--KEMVLPMNTGAEA 105 (392)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSC--CCTTS-EETTHHHHHHHHHHHH----T--CSEEEEESSHHHH
T ss_pred CCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccc--ccccc-CCHHHHHHHHHHHHhc----C--CCEEEEeCcHHHH
Confidence 456888887754433 578999999998875421 11112 3445677777777775 4 7899999999999
Q ss_pred HHH-HHHhcCC----------CCEEEEeCCCchhhHhHHHHhccccccc-cccCccceeEEeecCCCCCccCCCCC--CC
Q 013521 148 ISR-LQMLLGS----------NVTVAVQDPSFPAYIDTSVIVGQAGKFL-KETGKYRNIVYMNCRPENNFFPDLST--TS 213 (441)
Q Consensus 148 l~~-l~~l~~~----------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~~~--~~ 213 (441)
+.+ +..+..+ +|.|+++.|+|++....+...+...... .......++..++.++ ..++++ .+
T Consensus 106 ~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~l~~ 181 (392)
T 3ruy_A 106 VETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGD----LEALKAAITP 181 (392)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTC----HHHHHHHCCT
T ss_pred HHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCccc----HHHHHHHhcc
Confidence 987 5444433 6799999999988766665544321100 0000001344444421 111111 26
Q ss_pred CccEEEEcCCCCccccCCCHHH-HHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQ-LKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
++++|++++|+||||.+++.++ +++|+++|++||+++|+||+|.+|...+.+.......-.++ +.||||.++ +|
T Consensus 182 ~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d----~~~~SK~l~-gG 256 (392)
T 3ruy_A 182 NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPD----MYILGKALG-GG 256 (392)
T ss_dssp TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS----EEEECGGGG-TT
T ss_pred CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCC----EEEEchhhh-CC
Confidence 8999999999999999996555 99999999999999999999987766554333222221122 337899986 57
Q ss_pred -ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC--
Q 013521 293 -VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-- 369 (441)
Q Consensus 293 -~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-- 369 (441)
+|+||++++++++ +.+.........+.+++.+.++.++++.. .. ++.+++++++++++.+.|++++
T Consensus 257 ~~~~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~-~~~~~~~~~~~~~l~~~L~~~~~~ 325 (392)
T 3ruy_A 257 VFPISCAAANRDIL--------GVFEPGSHGSTFGGNPLACAVSIAALEVL--EE-EKLTERSLQLGEKLVGQLKEIDNP 325 (392)
T ss_dssp TSCCEEEEECHHHH--------TTCCTTSSCCSSTTCHHHHHHHHHHHHHH--HH-TTHHHHHHHHHHHHHHHHTTCCCT
T ss_pred hhhhEEEEECHHHH--------hhhccCCcCCCCCCCHHHHHHHHHHHHHH--Hh-hhHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999988763 22332233334567889999888888632 21 6778889999999999999874
Q ss_pred -CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 370 -LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 370 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+.... ..|.++++.++. +..++.+.++ ++||.+.||. ++++|++ +..+++++++++++|++++
T Consensus 326 ~~~~~~-~~g~~~~~~~~~-~~~~l~~~l~-~~gi~v~~~~------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 326 MITEVR-GKGLFIGIELNE-PARPYCEQLK-AAGLLCKETH------ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp TEEEEE-EETTEEEEEESS-CSHHHHHHHH-TTTEECCCBT------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEE-eeeeEEEEEEcc-hHHHHHHHHH-HCCcEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 33333 346777777875 5677777776 5699999864 5799999 4568999999999998863
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-31 Score=262.59 Aligned_cols=350 Identities=13% Similarity=0.062 Sum_probs=208.2
Q ss_pred CCCeEEeCCC--CCCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG--DTTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|++.+ ..++. .++.+.+++.+.+.... .|.+..+..++++++++++.+.++.++++|++|+|++++
T Consensus 28 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea 101 (430)
T 3i4j_A 28 GRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP------FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEA 101 (430)
T ss_dssp SCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC------CCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHH
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHHHHhcc------cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHH
Confidence 3568888876 33332 48999999999887532 232333555667777777766567788999999999999
Q ss_pred HHH-HHHhc--------CCCCEEEEeCCCchhhHhHHHHhcccccccccc-Cccc--eeEEeecCCCC---Ccc-CCCCC
Q 013521 148 ISR-LQMLL--------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKET-GKYR--NIVYMNCRPEN---NFF-PDLST 211 (441)
Q Consensus 148 l~~-l~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~--~v~~v~~~~~~---~~~-~~~~~ 211 (441)
+.. +..++ .+++.|++.+|+|+++...+...+......... .... ++..++.+... ... .++++
T Consensus 102 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 181 (430)
T 3i4j_A 102 TESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRA 181 (430)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHH
Confidence 997 54444 457899999999999876555544321100000 0000 22333332110 000 11221
Q ss_pred -----CCCccEEEEcCC-CC-cccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc-CCCcceeEEEe
Q 013521 212 -----TSRTDIIFFCSP-NN-PTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI-PGAREVAIEIS 282 (441)
Q Consensus 212 -----~~~~~~v~i~~p-~N-PtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~-~~~~~~~i~i~ 282 (441)
.++..++++++| +| ++|. +++.+++++|.++|++||+++|+||+|.+|...+........ ...++ +.
T Consensus 182 ~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~d----i~ 257 (430)
T 3i4j_A 182 LLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPD----IA 257 (430)
T ss_dssp HHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCS----EE
T ss_pred HHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCc----EE
Confidence 113344555666 66 8886 678889999999999999999999999988665543333333 21222 33
Q ss_pred cCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH----HhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHH
Q 013521 283 SFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI----VCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKE 356 (441)
Q Consensus 283 S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~ 356 (441)
+|||.++ +| +|+||+++++++ ++.+... ......+.++++|.++.++++.... ...++.++..+.
T Consensus 258 t~sK~l~-~G~~r~G~~~~~~~i--------~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 328 (430)
T 3i4j_A 258 VLGKGLA-AGYAPLAGLLAAPQV--------YETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQ 328 (430)
T ss_dssp EECGGGT-TTSSCCEEEEECHHH--------HHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred EEccccc-CCccccEEEEECHHH--------HHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 6999998 79 999999998887 3555432 2233445789999999888862111 223444444444
Q ss_pred HHHHHHHHHHhC-CCeeeCCCCceEEEEEcCCCC----------hHHHHHHHHHhcCeEEeCCCCc-CCCCCCeEEEEee
Q 013521 357 NAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGSS----------SWDVFAEILEKTHILTIPGSGF-GPGGNEHIRVSAF 424 (441)
Q Consensus 357 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ll~~~gi~v~pg~~f-~~~~~~~iRls~~ 424 (441)
.++.+.+.+.++ ++.... ..|.|+|+++.+.. ..++.+.+++ +||.+.|+..+ .+.+.+++||++.
T Consensus 329 ~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~~~~~iRi~~~ 406 (430)
T 3i4j_A 329 LLAGLQALQARFPQMMQVR-GTGLLLGVVLGDLATGQAFETPGIASRIGAAALK-RGLITYPGSGAEPNGRGDHLLLGPP 406 (430)
T ss_dssp HHHHHHHHHHHCTTEEEEE-EETTEEEEEEC------------CHHHHHHHHHH-TTEECC-----------CEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEE-EEEEEEEEEeccccccCCCccHHHHHHHHHHHHh-CCCEEEecccccCCCCCCEEEEECC
Confidence 444454444444 344444 35778888885211 2456677665 59999998432 3334689999974
Q ss_pred --cCHHHHHHHHHHHHhhC
Q 013521 425 --GHREYISEACRRLKNFL 441 (441)
Q Consensus 425 --~~~~~~~~~l~~l~~~l 441 (441)
.+++++++++++|++++
T Consensus 407 ~~~t~e~i~~~l~~l~~~l 425 (430)
T 3i4j_A 407 LSITAAEVDGLLALLAGAL 425 (430)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 58999999999998763
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=9.8e-31 Score=252.01 Aligned_cols=321 Identities=11% Similarity=0.094 Sum_probs=223.6
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
+++|+|+.+.+ .++++.+.+++.+.+. .....|++.....++++.+++++ + .+++|++|+|+++++.+
T Consensus 7 ~~~id~~~~~~-~~~~~~v~~a~~~~~~-----~~~~~~~~~~~~~~l~~~la~~~----g-~~~~v~~~~~gt~a~~~a 75 (356)
T 1v72_A 7 PPALGFSSDNI-AGASPEVAQALVKHSS-----GQAGPYGTDELTAQVKRKFCEIF----E-RDVEVFLVPTGTAANALC 75 (356)
T ss_dssp CCCCBCSCGGG-CCCCHHHHHHHHHTTS-----SCCCSTTCSHHHHHHHHHHHHHH----T-SCCEEEEESCHHHHHHHH
T ss_pred CceEeeccCCc-cCCCHHHHHHHHhhcc-----CcccccccchHHHHHHHHHHHHh----C-CCCcEEEeCCccHHHHHH
Confidence 46889998754 4577889999888642 12345655555566777777665 5 45569999999999987
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhH--HHHh--ccccccccccCccceeEEeecCCCCCccCC-CCC---C-------CCc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDT--SVIV--GQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST---T-------SRT 215 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~--~~~~--g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~---~-------~~~ 215 (441)
+..++++||.|+++.|+|.+.... +... | .+++.++.+. ..++++ +++ . +++
T Consensus 76 l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 76 LSAMTPPWGNIYCHPASHINNDECGAPEFFSNG------------AKLMTVDGPA-AKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTS------------CEEEECCCGG-GCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred HHHhcCCCCEEEEcCccchhhhhchHHHHHhCC------------cEEEEecCCC-CeEcHHHHHHHhhhcchhhccCCc
Confidence 666778999999999999887666 6666 7 4778887642 222111 111 1 268
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc--CCCCCcccccCCCcceeEEEecCCcccCCccc
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT--DPSPRSIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~--~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
++|++++||| ||.++|.+++++|+++|++||+++|+|++|..+.. .+.......+....+ +++.|+||. +. .+
T Consensus 143 ~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~-g~-~~ 217 (356)
T 1v72_A 143 ACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVD--ALSFGATKN-GV-LA 217 (356)
T ss_dssp EEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCC--EEEECCGGG-TC-SS
T ss_pred eEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCC--EEEEecccC-CC-cC
Confidence 9999999987 99999999999999999999999999999985421 121112211111122 445689998 43 33
Q ss_pred eeEEEEeeccccccCCchhHHHHHHHHhhhc--CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 013521 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCTCF--NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GL 370 (441)
Q Consensus 294 r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 370 (441)
..||++++++++ +.+........ ...+...+.++...+.+.. ..+..++++++++++.+.|+++ |+
T Consensus 218 G~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~l~~~L~~~~g~ 286 (356)
T 1v72_A 218 AEAIVLFNTSLA--------TEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDL---WLRNARKANAAAQRLAQGLEGLGGV 286 (356)
T ss_dssp CEEEEESSGGGH--------HHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred ccEEEEECHHHH--------hhHHHHhhccCchhhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 445888887763 44443332211 1123344444556665422 2445677788899999999886 88
Q ss_pred eeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 371 KVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
++..+.+++++|++++ .++.+.+.+ +||.+.||. |+ ++++|+++. .+++++++++++|++++
T Consensus 287 ~~~~~~~~~~~~~~~~----~~~~~~l~~-~gi~v~~g~-~~---~~~iRi~~~~~~~~~~i~~~~~~l~~~l 350 (356)
T 1v72_A 287 EVLGGTEANILFCRLD----SAMIDALLK-AGFGFYHDR-WG---PNVVRFVTSFATTAEDVDHLLNQVRLAA 350 (356)
T ss_dssp EEESCCCSSEEEEEEC----HHHHHHHHH-TTCBCBCSS-SS---TTEEEEECCTTCCHHHHHHHHHHHHHTC
T ss_pred EEccCCCccEEEEEcC----HHHHHHHHh-cCeEEeccc-cC---CCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 8876778899999985 367777654 599999987 54 679999963 48999999999998864
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.3e-31 Score=260.46 Aligned_cols=320 Identities=14% Similarity=0.109 Sum_probs=226.0
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCCCc-EEEcCCcHHHHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEGDE-IFISDGAQSDISR 150 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~-I~~t~G~~~al~~ 150 (441)
.+.++-| +.++++.+.+++.+.+ ..+|.+ .....++++.+++++ +.++++ |++|+|+++++.+
T Consensus 14 ~~~~~pg--p~~~~~~v~~a~~~~~--------~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~sgt~al~~ 79 (411)
T 3nnk_A 14 RLLMGPG--PINADPRVLRAMSSQL--------IGQYDPAMTHYMNEVMALYRGVF----RTENRWTMLVDGTSRAGIEA 79 (411)
T ss_dssp CEEESSS--CCCCCHHHHHHHTSCC--------CCTTCHHHHHHHHHHHHHHHHHH----TCCCSEEEEEESCHHHHHHH
T ss_pred ceeecCC--CCCCCHHHHHHhhccc--------cccccHHHHHHHHHHHHHHHHHh----CCCCCcEEEECCCcHHHHHH
Confidence 3445433 4557788877776522 122322 122355566666554 776665 7888899999987
Q ss_pred -HHHhcCCCCEEEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C-CCccEEEEcCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T-SRTDIIFFCSP 223 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~-~~~~~v~i~~p 223 (441)
+..++++||+|+++.|+|++ +...+...| .+++.++.+.+..++++ +++ . .++++|++++|
T Consensus 80 ~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~ 147 (411)
T 3nnk_A 80 ILVSAIRPGDKVLVPVFGRFGHLLCEIARRCR------------AEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQG 147 (411)
T ss_dssp HHHHHCCTTCEEEEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred HHHHhcCCCCEEEEecCCchHHHHHHHHHHcC------------CeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCC
Confidence 67788999999999999988 777888888 58889988654332221 211 1 38999999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
+||||.+++ +++|+++|++||+++|+|++++.... +.... ..+.++++.|+||+++ ++.++||++++++
T Consensus 148 ~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~----~~~~d~~~~s~~K~l~-~~~g~g~~~~~~~ 216 (411)
T 3nnk_A 148 DTSTTMLQP---LAELGEICRRYDALFYTDATASLGGN---PLETD----VWGLDAVSAGMQKCLG-GPSGTSPITLSAR 216 (411)
T ss_dssp ETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBTTB---CCCTT----TTTCSEEECCSTTTTC-CCSSEEEEEECHH
T ss_pred CCCcceecc---HHHHHHHHHHcCCEEEEECCcccCCc---ccchh----ccCCcEEEecCccccC-CCCceEEEEECHH
Confidence 999999999 78999999999999999999873211 22221 1234699999999864 4557999999887
Q ss_pred ccccCCchhHHHHHHHH------------------------------------hhhcCCCcHHHHHHHHHhcCCCcHHHH
Q 013521 304 LRYSNGYPVIKDFNRIV------------------------------------CTCFNGASNIVQAGGLACLSPDGFQAL 347 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~ 347 (441)
++ +.+.... .....+.+...+.++.+++.......+
T Consensus 217 ~~--------~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~ 288 (411)
T 3nnk_A 217 ME--------EAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGL 288 (411)
T ss_dssp HH--------HHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HH--------HHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 73 3332211 011233466666666566542111226
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeCCCC---ceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe
Q 013521 348 RTVIDYYKENAKIIVDAFQSLGLKVNGGKN---APYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA 423 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~ 423 (441)
++++++++++++++.+.|++.|+++..+.+ +.++|+.++ +.+..++.+.+++++||.+.||. +....+++||++
T Consensus 289 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~--~~~~~~~iRi~~ 366 (411)
T 3nnk_A 289 DYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSF--GPLHGKVWRIGT 366 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECC--GGGTTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCcc--CCCCCCEEEEeC
Confidence 888999999999999999998888765443 678999997 55677888888877799999984 333467999997
Q ss_pred -e--cCHHHHHHHHHHHHhh
Q 013521 424 -F--GHREYISEACRRLKNF 440 (441)
Q Consensus 424 -~--~~~~~~~~~l~~l~~~ 440 (441)
. .+++++++++++|+++
T Consensus 367 ~~~~~~~~~i~~~~~~l~~~ 386 (411)
T 3nnk_A 367 MGYNARKDCVMTTLSALEAV 386 (411)
T ss_dssp CGGGCSHHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHHHHHHH
Confidence 3 3789999999999875
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-32 Score=267.78 Aligned_cols=341 Identities=9% Similarity=0.062 Sum_probs=224.3
Q ss_pred CCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++|++.+.+ ++ .+++.+.+++.+.+.... ....+|.+..+..+||++|++++. +-.+++|++|+|++++
T Consensus 40 g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~---~~~~~~v~~~~g~~~a 114 (426)
T 1sff_A 40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS--HTCFQVLAYEPYLELCEIMNQKVP---GDFAKKTLLVTTGSEA 114 (426)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCS--CCCTTTEECHHHHHHHHHHHHHSS---CSSCEEEEEESSHHHH
T ss_pred CCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCC---cccccEEEEeCchHHH
Confidence 456889887763 33 267889999999886532 112256677899999999999962 2134899999999999
Q ss_pred HHH-HH---HhcCCCCEEEEeCCCchhhHh-HHHHhccccccc-cccCccceeEEeecCC--CC-CccCC---CCC---C
Q 013521 148 ISR-LQ---MLLGSNVTVAVQDPSFPAYID-TSVIVGQAGKFL-KETGKYRNIVYMNCRP--EN-NFFPD---LST---T 212 (441)
Q Consensus 148 l~~-l~---~l~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~~-~~~~~~~~v~~v~~~~--~~-~~~~~---~~~---~ 212 (441)
+.+ +. .+.++| .|++++|+|+++.. .....|.+..+. ........++.++.+. ++ ++..+ +++ .
T Consensus 115 ~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~ 193 (426)
T 1sff_A 115 VENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKN 193 (426)
T ss_dssp HHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHh
Confidence 997 44 456776 89999999988654 455555320000 0000001255666642 11 11112 221 1
Q ss_pred ----CCccEEEEc-CCCCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCc
Q 013521 213 ----SRTDIIFFC-SPNNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSK 286 (441)
Q Consensus 213 ----~~~~~v~i~-~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK 286 (441)
+++++|+++ +|+| || .++|.+++++|+++|++||++||+||+|.+|.+.+...++... +..+.+.||||
T Consensus 194 ~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~----~~~~di~s~sK 268 (426)
T 1sff_A 194 DAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM----GVAPDLTTFAK 268 (426)
T ss_dssp TCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGT----TSCCSEEEECG
T ss_pred ccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhc----CCCCCEEEEcc
Confidence 356676664 5578 99 7899999999999999999999999999987655432222222 11223459999
Q ss_pred ccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013521 287 FAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 287 ~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
.++ +|+|+||++++++++ +.+.........+.+++.|.++.++++.... ....++++++++.+.+.|+
T Consensus 269 ~~~-~GlriG~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~ 336 (426)
T 1sff_A 269 SIA-GGFPLAGVTGRAEVM--------DAVAPGGLGGTYAGNPIACVAALEVLKVFEQ---ENLLQKANDLGQKLKDGLL 336 (426)
T ss_dssp GGG-TSSCCEEEEEEHHHH--------TTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred ccc-CCCceEEEEEcHHHH--------hhhccCCcCcCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence 999 599999999998774 2222111223345788888888877652111 2344556666666666665
Q ss_pred hC----C-CeeeCCCCceEEEEEcCC---------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHH
Q 013521 367 SL----G-LKVNGGKNAPYVWVQFPG---------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYI 430 (441)
Q Consensus 367 ~~----g-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~ 430 (441)
++ . +....+ .|+|+|++++. .+..++...+++ +||.+.||..| ++++||++ ..+++++
T Consensus 337 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~----~~~iRi~~~~~~~~~~i 410 (426)
T 1sff_A 337 AIAEKHPEIGDVRG-LGAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY----YNVLRILVPLTIEDAQI 410 (426)
T ss_dssp HHHHTCTTEEEEEE-ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT----SCEEEECCCTTCCHHHH
T ss_pred HHHHhCCCeEEEEE-EEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC----CCEEEEECCccCCHHHH
Confidence 53 2 222333 48899999842 124556677665 59999998754 57899997 4589999
Q ss_pred HHHHHHHHhh
Q 013521 431 SEACRRLKNF 440 (441)
Q Consensus 431 ~~~l~~l~~~ 440 (441)
++++++|+++
T Consensus 411 ~~~~~~l~~~ 420 (426)
T 1sff_A 411 RQGLEIISQC 420 (426)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-32 Score=264.25 Aligned_cols=339 Identities=14% Similarity=0.090 Sum_probs=214.4
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC----CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA----EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.+.|+.+.+. ++|+.+.+++.+.+.+....... .|.. .....++++.++++ +++++++|++|+|++++
T Consensus 19 ~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~----~~~~~~~v~~~~g~t~a 92 (400)
T 3vax_A 19 SHMTYLDAAATT-RVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLAST----VSAEPDELIFTSGATES 92 (400)
T ss_dssp ---CCCCCCCCS-SSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHH----TTCCGGGEEEESCHHHH
T ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHH----cCCCCCcEEEeCCHHHH
Confidence 457778877665 67889999999988653210111 1211 12245556666655 48888999999999999
Q ss_pred HHH-HHHhc----CCCC-EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEE
Q 013521 148 ISR-LQMLL----GSNV-TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDII 218 (441)
Q Consensus 148 l~~-l~~l~----~~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v 218 (441)
+.+ +..++ ++|| .|+++.++|+++...+..+...| .+++.++.+.++.++++ +++ .++++++
T Consensus 93 l~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v 163 (400)
T 3vax_A 93 NNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRG---------FEVDFLTPGPSGRISVEGVMERLRPDTLLV 163 (400)
T ss_dssp HHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTT---------CEEEEECCCTTCCCCHHHHHTTCCTTEEEE
T ss_pred HHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcC---------CeEEEEccCCCCCcCHHHHHHhcCCCceEE
Confidence 998 56666 8999 99999999999877776653222 48889988764333221 222 3678999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++++||||||.+++ +++|+++|++||++||+|++|+.... +..+ ... .++++.|+||.+|.+| +|++
T Consensus 164 ~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~---~~~~---~~~--~d~~~~s~~K~~g~~g--~g~~ 230 (400)
T 3vax_A 164 SLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYGKV---PGDL---TTP--IDMISISGHKIGAPKG--VGAL 230 (400)
T ss_dssp ECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTTTS---GGGG---GSC--CSEEEEETGGGTSCSS--CEEE
T ss_pred EEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCCC---CcCh---hhc--CcEEEEeHHHhCCCCc--eEEE
Confidence 99999999999999 78999999999999999999984211 1122 111 3489999999877444 6777
Q ss_pred E-eeccccc---cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 299 V-VPEELRY---SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 299 ~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
+ ++++.+. ...................+.+...+.++.+++.. ..+++++.+++++++++++.+.|+..|+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 309 (400)
T 3vax_A 231 VTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI-FEAEHAQWQVAAQDLRSRLLAGLASTSFQVNG 309 (400)
T ss_dssp EECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHTTTTCEECS
T ss_pred EEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 7 7762110 00000000000001122333556666655555541 12356888999999999999999833888876
Q ss_pred CCC---ceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCC-----------------CCeEEEEe-e--cCHHHHH
Q 013521 375 GKN---APYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGG-----------------NEHIRVSA-F--GHREYIS 431 (441)
Q Consensus 375 ~~~---~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-----------------~~~iRls~-~--~~~~~~~ 431 (441)
+.+ +.++++.+++.+..++.+.|. +||.+.+|..|.... .++|||++ . .++++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~L~--~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~ 387 (400)
T 3vax_A 310 DQDHVVPHILNLSFEDVDAEAFLVTLK--DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVE 387 (400)
T ss_dssp CTTSBCTTEEEEECTTCCHHHHHHHHH--HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------
T ss_pred CcccCCCCEEEEEeCCCCHHHHHHHHh--cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHH
Confidence 544 457888888666777777766 599999997664311 48999999 5 3789999
Q ss_pred HHHHHHHhhC
Q 013521 432 EACRRLKNFL 441 (441)
Q Consensus 432 ~~l~~l~~~l 441 (441)
+++++|++++
T Consensus 388 ~~~~~l~~~~ 397 (400)
T 3vax_A 388 ELARGVAKLK 397 (400)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=256.87 Aligned_cols=319 Identities=12% Similarity=0.122 Sum_probs=224.1
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCCCcEE-EcCCcHHHHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEGDEIF-ISDGAQSDISR 150 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~I~-~t~G~~~al~~ 150 (441)
.+.|+.+ +.+.++.+.+++.+ .....|.+ .....++++.++++ ++.++++++ +++|+++++.+
T Consensus 12 ~~~~~p~--p~~~~~~v~~a~~~--------~~~~~~~~~~~~~~~~l~~~la~~----~g~~~~~~~~~~~s~t~al~~ 77 (416)
T 3isl_A 12 RTIMTPG--PVEVDPRVLRVMST--------PVVGQFDPAFTGIMNETMEMLREL----FQTKNRWAYPIDGTSRAGIEA 77 (416)
T ss_dssp CEECSSS--SCCCCHHHHHHTTS--------CCCCTTSHHHHHHHHHHHHHHHHH----TTCCCSEEEEEESCHHHHHHH
T ss_pred ceeecCC--CcCcCHHHHHHhcc--------cCCCCccHHHHHHHHHHHHHHHHH----hCCCCCcEEEecCcHHHHHHH
Confidence 4455533 34456766665544 22223322 22345555556555 478877776 88889999987
Q ss_pred -HHHhcCCCCEEEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C-CCccEEEEcCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T-SRTDIIFFCSP 223 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~-~~~~~v~i~~p 223 (441)
+..++++||+|++++|+|++ +...++..| .+++.++.+.++.++++ +++ . +++++|++++|
T Consensus 78 ~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~ 145 (416)
T 3isl_A 78 VLASVIEPEDDVLIPIYGRFGYLLTEIAERYG------------ANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHG 145 (416)
T ss_dssp HHHHHCCTTCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred HHHHhcCCCCEEEEecCCcccHHHHHHHHhcC------------CeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEcc
Confidence 67788999999999999998 666777778 58999998765432222 221 1 47899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
|||||.+++ +++|.++|++||+++|+|++|+.... +..+.. .+.++++.|+||+++ ++.++||++++++
T Consensus 146 ~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~----~~~d~~~~s~~K~l~-g~~g~g~~~~~~~ 214 (416)
T 3isl_A 146 ETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGC---EVKVDE----WKIDAAIGGTQKCLS-VPSGMAPITYNER 214 (416)
T ss_dssp ETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTS---CCCTTT----TTCSEEECCSSSTTC-CCSSEEEEEECHH
T ss_pred CCCCceecC---HHHHHHHHHHcCCEEEEECCccccCC---Ccchhh----cCCCEEEecCccccC-CCCCeEEEEECHH
Confidence 999999999 88899999999999999999873221 122211 234599999999764 5557999999887
Q ss_pred ccccCCchhHHHHHHH--------------------------------------HhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 304 LRYSNGYPVIKDFNRI--------------------------------------VCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
++ +.+... ......+.+...+.++.+++... ..
T Consensus 215 ~~--------~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~ 285 (416)
T 3isl_A 215 VA--------DVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLV-LE 285 (416)
T ss_dssp HH--------HHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH-HH
T ss_pred HH--------HHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH-HH
Confidence 73 222211 01112245666666666666421 23
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCC---ceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEE
Q 013521 346 A-LRTVIDYYKENAKIIVDAFQSLGLKVNGGKN---APYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIR 420 (441)
Q Consensus 346 ~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iR 420 (441)
+ +++.+++++++++++.+.|++.|+++..+.+ +.++|+.++ +.+..++.+.|++++||.+.+|.. +..++++|
T Consensus 286 ~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~--~~~~~~iR 363 (416)
T 3isl_A 286 EGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFG--PLAGKIWR 363 (416)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCS--TTTTTEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC--CCCCCEEE
Confidence 3 6889999999999999999998888766543 678999996 556778888887777999999873 34568999
Q ss_pred EEee--cCHHH-HHHHHHHHHhh
Q 013521 421 VSAF--GHREY-ISEACRRLKNF 440 (441)
Q Consensus 421 ls~~--~~~~~-~~~~l~~l~~~ 440 (441)
|++. .++++ +++++++|+++
T Consensus 364 i~~~~~~~~~e~i~~~~~~l~~~ 386 (416)
T 3isl_A 364 IGTMGYSCRKENVLFVLAGLEAV 386 (416)
T ss_dssp EECCGGGCSHHHHHHHHHHHHHH
T ss_pred EecccCCCcHHHHHHHHHHHHHH
Confidence 9972 34455 99999999875
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-31 Score=253.94 Aligned_cols=317 Identities=16% Similarity=0.127 Sum_probs=207.4
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSDISRL 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~al~~l 151 (441)
+++|++.+.++.+.++.+.+++. . |. +...+.+.+++++.+.++. +++++++|+|+++++.++
T Consensus 29 ~v~~~~~~~~~~~~~~~v~~a~~----~---------~~---~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~ 92 (374)
T 2aeu_A 29 ALYDLSGLSGGFLIDEKDKALLN----T---------YI---GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILAT 92 (374)
T ss_dssp GCEECSSCCCCCCCCHHHHHHHT----S---------TT---HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred ceeeecccCCCCCCCHHHHHHHH----H---------hc---CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHH
Confidence 68999999888889999888885 1 11 1123445555555443466 358999999999999984
Q ss_pred HHhcCCCCEEEEeCCCchhhHh---HHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccE-EEEcCCCCcc
Q 013521 152 QMLLGSNVTVAVQDPSFPAYID---TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDI-IFFCSPNNPT 227 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-v~i~~p~NPt 227 (441)
...+ +||+|+++.|+|++... .+...| .+++.+ .+.+ .+ ... .+++++ |++++|||||
T Consensus 93 ~~~~-~gd~Vl~~~~~y~~~~~~~~~~~~~g------------~~~~~v-~d~~-~l-~~~--~~~~~~~v~~~~p~npt 154 (374)
T 2aeu_A 93 ILAL-KPKKVIHYLPELPGHPSIERSCKIVN------------AKYFES-DKVG-EI-LNK--IDKDTLVIITGSTMDLK 154 (374)
T ss_dssp HHHH-CCSEEEEECSSSSCCTHHHHHHHHTT------------CEEEEE-SCHH-HH-HTT--CCTTEEEEEECBCTTSC
T ss_pred HHhC-CCCEEEEecCCCCccHHHHHHHHHcC------------cEEEEe-CCHH-HH-Hhc--CCCccEEEEEccCCCCC
Confidence 3344 99999999998877544 455556 466666 3221 11 112 357899 9999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEccccccccc-CCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT-DPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~-~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
|. +..++++|+++|++||+++|+||+|+.+.. .....+.... +.+++++|+||.+ +|+|+||+++++++
T Consensus 155 G~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~----~~di~~~S~sK~l--~g~~~G~~~~~~~~-- 224 (374)
T 2aeu_A 155 VI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL----GADLVVTSTDKLM--EGPRGGLLAGKKEL-- 224 (374)
T ss_dssp BC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH----TCSEEEEETTSSS--SSCSCEEEEEEHHH--
T ss_pred CC--CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcccc----CCcEEEecCcccc--cCcceEEEEECHHH--
Confidence 97 778899999999999999999999987642 1101112222 2358899999996 57899999999877
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHH----HHHHHHHHHhC----CCeeeCCCCc
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKEN----AKIIVDAFQSL----GLKVNGGKNA 378 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~----g~~~~~~~~~ 378 (441)
++.+.........+++++.+.++.+.+.....+.+++..+..+.. ++.+.+.|... |+.+..++.|
T Consensus 225 ------~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g 298 (374)
T 2aeu_A 225 ------VDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTG 298 (374)
T ss_dssp ------HHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSE
T ss_pred ------HHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCce
Confidence 455555444333346788888888887643221122222222222 45555555542 4555433344
Q ss_pred -eEEEEEcCCC----ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-C--HHHHHHHHHHHHhh
Q 013521 379 -PYVWVQFPGS----SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-H--REYISEACRRLKNF 440 (441)
Q Consensus 379 -~~~~~~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~--~~~~~~~l~~l~~~ 440 (441)
++.|.+++.. ++.+++..+++++||.+.||..| +.+++++||+++. + +.+++++++.|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~-~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~ 367 (374)
T 2aeu_A 299 FVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM-PGASKSLRIDLTSRDAERIDDNYIIKAIVES 367 (374)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS-CSSCCSEEEETTSGGGGGSCHHHHHHHHHHH
T ss_pred EEEEeecccccccccchHHHHHHHHHhCCEEEecCCCC-CCCCCeEEEEcCCchHHHHHHHHHHHHHHHH
Confidence 4455555311 11236667787789999999877 3356789999854 2 22367777666654
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=254.53 Aligned_cols=315 Identities=18% Similarity=0.209 Sum_probs=210.3
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
++|+|+.+.+++ +++.+.+++.+... ....|++..+..+||+++|+++ +. +++++++|+++++.+ +
T Consensus 4 ~~i~~~~~~~~~-p~~~~~~a~~~~~~------~~~~y~~~~~~~~l~~~la~~~----g~--~~~~~~~~gt~a~~~~~ 70 (347)
T 1jg8_A 4 MMIDLRSDTVTK-PTEEMRKAMAQAEV------GDDVYGEDPTINELERLAAETF----GK--EAALFVPSGTMGNQVSI 70 (347)
T ss_dssp -CEECSCGGGCC-CCHHHHHHHHTCCC------CCGGGTCCHHHHHHHHHHHHHH----TC--SEEEEESCHHHHHHHHH
T ss_pred eEEEeccccCCC-CCHHHHHHHhcCCC------CCcccCCChHHHHHHHHHHHHh----CC--ceEEEecCcHHHHHHHH
Confidence 579999999876 55677777765321 1235777789999999999997 44 467777777888776 6
Q ss_pred HHhcCCCCEEEEeCCCchhhHh---HHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C------CCccEEE
Q 013521 152 QMLLGSNVTVAVQDPSFPAYID---TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T------SRTDIIF 219 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~------~~~~~v~ 219 (441)
..++++||+|++++|+|..... .+...| .+++.+ .++++.++++ +++ . +++++|+
T Consensus 71 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~ 137 (347)
T 1jg8_A 71 MAHTQRGDEVILEADSHIFWYEVGAMAVLSG------------VMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIA 137 (347)
T ss_dssp HHHCCTTCEEEEETTCHHHHSSTTHHHHHTC------------CEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEE
T ss_pred HHhcCCCCEEEEcCcchhhhccccchhhccC------------eEEEEe-cCCCCccCHHHHHHHhccccccccCceEEE
Confidence 7778999999999999976543 455566 466666 3322211211 111 1 2689999
Q ss_pred EcCCCCcc-ccCCCHHHHHHHHHHHHHcCcEEEEcccccccc--cCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 220 FCSPNNPT-GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI--TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 220 i~~p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~--~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
+++||||| |.++|.+++++|+++|++||+++|+|++|.... +.+ .+...+....+ .++.|+||.++.+ +|
T Consensus 138 ~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~--~~~~~~~~~~d--~~~~s~sK~l~~~---~G 210 (347)
T 1jg8_A 138 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG--VPVKEYAGYAD--SVMFCLSKGLCAP---VG 210 (347)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC--CCHHHHHHTCS--EEEEESSSTTCCS---SC
T ss_pred EeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcC--CChHHhccccc--EEEEecccccCCC---ce
Confidence 99999999 999999999999999999999999999875321 111 12222211123 3445899999743 57
Q ss_pred -EEEeeccccccCCchhHHHHHHHHhhhcCC--CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013521 297 -WTVVPEELRYSNGYPVIKDFNRIVCTCFNG--ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN 373 (441)
Q Consensus 297 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 373 (441)
|+++++++ ++.+...+.....+ .+...+.++...++.. . +.+. +..++++.+.+.|+++|+.+.
T Consensus 211 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~---~~~~-~~~~~~~~l~~~L~~~~~~~~ 277 (347)
T 1jg8_A 211 SVVVGDRDF--------IERARKARKMLGGGMRQAGVLAAAGIIALTKM-V---DRLK-EDHENARFLALKLKEIGYSVN 277 (347)
T ss_dssp EEEEECHHH--------HHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS-S---TTHH-HHHHHHHHHHHHHHHHTCBCC
T ss_pred EEEEcCHHH--------HHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH-H---HHHH-HHHHHHHHHHHHHHhcCceec
Confidence 45666665 34444333322221 2334444444455321 1 1122 223466788888877776652
Q ss_pred -CCCCceEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 374 -GGKNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 374 -~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
.+..++|+|++++ +.+..++.++|.+ +||.+.|+. .+++|+++. .+++++++++++|+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~------~~~iRl~~~~~~~~e~i~~~~~~l~~~ 342 (347)
T 1jg8_A 278 PEDVKTNMVILRTDNLKVNAHGFIEALRN-SGVLANAVS------DTEIRLVTHKDVSRNDIEEALNIFEKL 342 (347)
T ss_dssp GGGCCSSEEEEECTTSSSCHHHHHHHHHH-HTEECEEEE------TTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcceEEEEEcccccCCHHHHHHHHHH-CCCEEecCC------CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3457788999997 3456778888765 599999752 468999973 3899999999999875
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-31 Score=258.05 Aligned_cols=329 Identities=17% Similarity=0.150 Sum_probs=224.1
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCc---CcHH--HHHHHH-HHHhhhCCCCCCcEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQ---GNMA--LRTAIA-DKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~---g~~~--lr~~ia-~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
++++|+.|.+++ ++.+.+++.+.+.+ ....+|+... |... ++++++ +++.+.++.++++|++++|++
T Consensus 24 ~~i~~~~~~~~~--~~~v~~a~~~~~~~----~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~- 96 (407)
T 2dkj_A 24 EGLELIASENFV--SKQVREAVGSVLTN----KYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQ- 96 (407)
T ss_dssp TSEECCTTCCCC--CHHHHHHHTSGGGG----CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHH-
T ss_pred cceeeccCCCCC--CHHHHHHHHhhhhc----CcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHH-
Confidence 579999998766 78899999887753 1122343221 4433 444322 233333477777788888865
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhH---hHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C-CCcc
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYI---DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T-SRTD 216 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~-~~~~ 216 (441)
++.+ +..++++||+|++++|+|+++. ..+...|.. ...+.++++++ ++..+++. . .+++
T Consensus 97 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~ 165 (407)
T 2dkj_A 97 ANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKL----------YKVVSYGVRPD-TELIDLEEVRRLALEHRPK 165 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHH----------SEEEEECCCTT-TSSCCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCce----------EEEEecCCCcc-cCccCHHHHHHHHhhcCCe
Confidence 8887 6667899999999999998883 444455520 13344433321 33334322 1 3789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+|++++|+|| ...+ +++|.++|++||+++|+||+|+. +.+.+...+. +. ..++++.|+||.+ +|+|+
T Consensus 166 ~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~~---~~di~~~s~sK~l--~g~~~ 233 (407)
T 2dkj_A 166 VIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP--LP---YAHVVTSTTHKTL--RGPRG 233 (407)
T ss_dssp EEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC--TT---TCSEEEEESSGGG--CCCSC
T ss_pred EEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCc--cc---cccEEEEeccccC--CCCCc
Confidence 9999999998 5566 89999999999999999999997 5444322221 11 2458999999965 68899
Q ss_pred EEEEee-ccccccCCchhHHHHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013521 296 GWTVVP-EELRYSNGYPVIKDFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN 373 (441)
Q Consensus 296 G~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 373 (441)
||++++ +++ .+.+....... ..+.+.....++.+++......++++++++++++++++.+.|++.|+++.
T Consensus 234 G~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 305 (407)
T 2dkj_A 234 GLILSNDPEL--------GKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIV 305 (407)
T ss_dssp EEEEESCHHH--------HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred eEEEECCHHH--------HHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 999998 566 34555443222 22334433334555554211256788899999999999999998888876
Q ss_pred C-CCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCc----CCCCCCeEEEEee------cCHHHHHHHHHHHHhh
Q 013521 374 G-GKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGF----GPGGNEHIRVSAF------GHREYISEACRRLKNF 440 (441)
Q Consensus 374 ~-~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f----~~~~~~~iRls~~------~~~~~~~~~l~~l~~~ 440 (441)
. +..++++|++++. .+..++.+.+ .++||.+.+|..| .+..++++|+++. .+++++++++++|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 384 (407)
T 2dkj_A 306 TGGTDNHLFLVDLRPKGLTGKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRA 384 (407)
T ss_dssp GGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred cCCCCceEEEEECcccCCCHHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHH
Confidence 4 3578899999973 3555666665 5569999999764 2334678999983 6899999999999875
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=247.01 Aligned_cols=324 Identities=12% Similarity=0.099 Sum_probs=224.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHHHHH-
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSDISR- 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~al~~- 150 (441)
+.+++.-|. .++|+.+.+++.+++.+.. .+..++ ..+..++.+.+.+++.+.++. ++++|++|+|+++++.+
T Consensus 4 ~~~~~~p~p--~~~~~~v~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~ 77 (362)
T 3ffr_A 4 NKIYFTPGP--SELYPTVRQHMITALDEKI--GVISHR--SKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERI 77 (362)
T ss_dssp CCEEECSSS--CCCCTTHHHHHHHHHHTTT--TTSCTT--SHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHH
T ss_pred cceeccCCC--cCCCHHHHHHHHHHhcCCc--cCcCCC--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHH
Confidence 356666553 4567888888888876411 011112 234445555555555554566 46899999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchh-hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCCCCCccEEEEcCCCCccc
Q 013521 151 LQMLLGSNVTVAVQDPSFPA-YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LSTTSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~v~i~~p~NPtG 228 (441)
+..++++ +.+++..+.|.. +...+...| .+++.++.+.+..++++ ++..+++++|++++|+||||
T Consensus 78 ~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~v~~~~~~nptG 144 (362)
T 3ffr_A 78 IQNCVEK-KSFHCVNGSFSKRFYEFAGELG------------REAYKEEAAFGKGFYPADITVPADAEIICLTHNETSSG 144 (362)
T ss_dssp HHHHCSS-EEEEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCGGGCCCCTTCCEEEEESEETTTT
T ss_pred HHhccCC-cEEEEcCcHHHHHHHHHHHHhC------------CCeEEEecCCCCCCCHHHHhccCCccEEEEEcCCCCcc
Confidence 6777777 555555556652 334555566 58888888654333222 33346899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHc-CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC-CccceeEEEEeeccccc
Q 013521 229 HAATWQQLKKLVEFAKAN-GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG-FTGVRLGWTVVPEELRY 306 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~-~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~-~~G~r~G~l~~~~~~~~ 306 (441)
.+++ +++|+++|++| |+++|+|++|+.+.. +..+ . +.++++.|+||+++ .+| +|+++++++++
T Consensus 145 ~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~---~~~~---~---~~d~~~~s~~K~~~~~~G--~g~~~~~~~~~- 209 (362)
T 3ffr_A 145 VSMP---VEDINTFRDKNKDALIFVDAVSSLPYP---KFDW---T---KIDSVFFSVQKCFGLPAG--LGVWILNDRVI- 209 (362)
T ss_dssp EECC---HHHHTTSGGGSTTSEEEEECTTTTTSS---CCCT---T---SCSEEEEETTSTTCCCSC--CEEEEEEHHHH-
T ss_pred eeCC---HHHHHHHHHhCCCCEEEEecccccCCc---ccCh---h---HCcEEEEecccccCCCCc--eEEEEECHHHH-
Confidence 9999 88899999999 999999999885322 1111 1 13488999999998 666 67788888773
Q ss_pred cCCchhHHHHHHHHh---------------------hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 307 SNGYPVIKDFNRIVC---------------------TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
+.+..... ....+.+...+.++.++++......+++++++++++++.+.+.|
T Consensus 210 -------~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 282 (362)
T 3ffr_A 210 -------EKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYI 282 (362)
T ss_dssp -------HHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 33333221 11344566666666555541111225788899999999999999
Q ss_pred HhC-CCeeeCC----CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHH
Q 013521 366 QSL-GLKVNGG----KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLK 438 (441)
Q Consensus 366 ~~~-g~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~ 438 (441)
+++ |+++..+ ..+.++|+.+++ +..++.+.|.++ ||.+.||..+ .++++|||++. .+++++++++++|+
T Consensus 283 ~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-gi~~~~g~~~--~~~~~iRis~~~~~~~e~i~~l~~~l~ 358 (362)
T 3ffr_A 283 ESSKVFSFGVEDAKLRSMTTIVANTTM-LPGEINKILEPF-DMAVGAGYGS--KKETQIRIANFPAHSLEQVHKLVQTLK 358 (362)
T ss_dssp HHCSSEEESSSCGGGBCSSEEEEEESS-CHHHHHHHHGGG-TEEEEECSGG--GTTTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHccCceeccCChhhcCCceEEEecCC-CHHHHHHHHHHC-CeEEecCccc--cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 998 8887652 245678999887 677787887766 9999998543 34689999974 48899999999998
Q ss_pred hhC
Q 013521 439 NFL 441 (441)
Q Consensus 439 ~~l 441 (441)
+++
T Consensus 359 ~~~ 361 (362)
T 3ffr_A 359 EKI 361 (362)
T ss_dssp HHT
T ss_pred HHh
Confidence 864
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=254.64 Aligned_cols=315 Identities=14% Similarity=0.115 Sum_probs=222.1
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHHHHH-HHHhcCC
Q 013521 82 TTQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSDISR-LQMLLGS 157 (441)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~al~~-l~~l~~~ 157 (441)
.+.++++.+.+++.+.+ ..+|.+ .....++++.+++++ +.+.+ +|++|+|+++++.+ +..++++
T Consensus 30 ~p~~~~~~v~~a~~~~~--------~~~~~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~gg~~al~~~~~~~~~~ 97 (393)
T 3kgw_A 30 GPSNLAPRVLAAGSLRM--------IGHMQKEMLQIMEEIKQGIQYVF----QTRNPLTLVVSGSGHCAMETALFNLLEP 97 (393)
T ss_dssp SCCCCCHHHHHHTTCCC--------CCTTSHHHHHHHHHHHHHHHHHH----TCCCSEEEEESCCTTTHHHHHHHHHCCT
T ss_pred CCCCCCHHHHHHhcccc--------cCcccHHHHHHHHHHHHHHHHHh----CCCCCcEEEEeCCcHHHHHHHHHhcCCC
Confidence 34567788877776522 112222 223456666666665 66554 59999999999997 6777899
Q ss_pred CCEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC-CccEEEEcCCCCccccCC
Q 013521 158 NVTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS-RTDIIFFCSPNNPTGHAA 231 (441)
Q Consensus 158 gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~-~~~~v~i~~p~NPtG~~~ 231 (441)
||+|+++.++|.+. ...+...| .+++.++.+.++.++++ +++ .. ++++|++++||||||.++
T Consensus 98 gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~ 165 (393)
T 3kgw_A 98 GDSFLTGTNGIWGMRAAEIADRIG------------ARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQ 165 (393)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC
T ss_pred CCEEEEEeCCchhHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhc
Confidence 99999999998643 55666677 58888888765433222 211 23 799999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCch
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYP 311 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~ 311 (441)
+ +++|.++|++||+++|+||+|+.... +..+. ..+.++++.|+||+++ ++.++||++++++++
T Consensus 166 ~---l~~i~~l~~~~~~~li~De~~~~g~~---~~~~~----~~~~d~~~~s~sK~~~-~~~g~g~~~~~~~~~------ 228 (393)
T 3kgw_A 166 P---LDGFGELCHRYQCLLLVDSVASLGGV---PIYMD----QQGIDIMYSSSQKVLN-APPGISLISFNDKAK------ 228 (393)
T ss_dssp C---CTTHHHHHHHTTCEEEEECTTTTTTS---CCCTT----TTTCCEEEEESSSTTC-CCSSCEEEEECHHHH------
T ss_pred c---HHHHHHHHHHcCCEEEEECCccccCc---ccchh----hcCCCEEEecCccccc-CCCceeEEEECHHHH------
Confidence 9 88999999999999999999873211 11111 1234588999999874 455699999988773
Q ss_pred hHHHHHHHHh-----------------------hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 312 VIKDFNRIVC-----------------------TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 312 ~~~~~~~~~~-----------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+.+..... ....+.+...+.++.+++......++++++++++++++.+.+.|+++
T Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 306 (393)
T 3kgw_A 229 --YKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM 306 (393)
T ss_dssp --HHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 33322110 11223566666666666642222346888999999999999999998
Q ss_pred CCeeeCCC----CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-e--cCHHHHHHHHHHHHhh
Q 013521 369 GLKVNGGK----NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-F--GHREYISEACRRLKNF 440 (441)
Q Consensus 369 g~~~~~~~----~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~--~~~~~~~~~l~~l~~~ 440 (441)
|+++..+. .+.++|+.++ +.+..++.+.+++++||.+.+|..+. .++++|+++ . .+++++++++++|+++
T Consensus 307 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~i~~~~~~l~~~ 384 (393)
T 3kgw_A 307 GLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPT--EERVLRIGLLGYNATTENVDRVAEALREA 384 (393)
T ss_dssp TCCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCCHHHHHHHHHHHHHH
T ss_pred CCeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccC--CCCEEEEEecccCCCHHHHHHHHHHHHHH
Confidence 88776332 2567789987 45667788888776799999987543 467999997 4 3899999999999876
Q ss_pred C
Q 013521 441 L 441 (441)
Q Consensus 441 l 441 (441)
+
T Consensus 385 l 385 (393)
T 3kgw_A 385 L 385 (393)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=253.85 Aligned_cols=318 Identities=13% Similarity=0.098 Sum_probs=219.6
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCC-CCcCcHHHHHHHHHHHhhhCCCC--CCcEEEcCCcHHHHHHH-HHhcCCC
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYG-AEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISRL-QMLLGSN 158 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~--~~~I~~t~G~~~al~~l-~~l~~~g 158 (441)
+.++|+.+.+++.+.+.. +.|. ...+..++|+.+++++ +++ +++|++|+|+++++.++ ..+++
T Consensus 8 p~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~t~g~t~a~~~~~~~~~~-- 74 (353)
T 2yrr_A 8 PTPIPERVQKALLRPMRG-------HLDPEVLRVNRAIQERLAALF----DPGEGALVAALAGSGSLGMEAGLANLDR-- 74 (353)
T ss_dssp SCCCCHHHHGGGGSCCCC-------TTCHHHHHHHHHHHHHHHHHH----CCCTTCEEEEESSCHHHHHHHHHHTCSC--
T ss_pred CCCCCHHHHHHHhccccc-------ccCHHHHHHHHHHHHHHHHHh----CCCCCCceEEEcCCcHHHHHHHHHHhcC--
Confidence 356778888887765431 1221 1245788899999887 554 78999999999999984 45555
Q ss_pred CEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC-CccEEEEcCCCCccccCCC
Q 013521 159 VTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS-RTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 159 d~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~-~~~~v~i~~p~NPtG~~~~ 232 (441)
|+|++++|+|+++ ...+...| .+++.++.++++.++++ +++ .+ ++++|++++|+||||.+++
T Consensus 75 d~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 142 (353)
T 2yrr_A 75 GPVLVLVNGAFSQRVAEMAALHG------------LDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP 142 (353)
T ss_dssp CCEEEEECSHHHHHHHHHHHHTT------------CCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred CcEEEEcCCCchHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC
Confidence 8999999999985 34445566 58888998754322221 111 13 7899999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC-CccceeEEEEeeccccccCC--
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG-FTGVRLGWTVVPEELRYSNG-- 309 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~-~~G~r~G~l~~~~~~~~~~~-- 309 (441)
+++|.++|++||+++|+|++|+.. ..+.++..+ +..+++.|++|+++ .+| +||++++++++..-.
T Consensus 143 ---~~~i~~l~~~~~~~li~D~a~~~~---~~~~~~~~~----~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~l~~~ 210 (353)
T 2yrr_A 143 ---AEAIGALAKEAGALFFLDAVTTLG---MLPFSMRAM----GVDYAFTGSQKCLSAPPG--LAPIAASLEARKAFTGK 210 (353)
T ss_dssp ---HHHHHHHHHHHTCEEEEECTTTTT---TSCCCHHHH----TCSEEECCTTSTTCCCSS--CEEEEECHHHHHHCCCC
T ss_pred ---HHHHHHHHHHcCCeEEEEcCcccc---ccccccccc----CceEEEecCcccccCCCc--eEEEEECHHHHHHhccC
Confidence 779999999999999999999632 113333333 23488999999654 345 799999988742100
Q ss_pred chh---HHHHHHHH--hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC--CceEEE
Q 013521 310 YPV---IKDFNRIV--CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK--NAPYVW 382 (441)
Q Consensus 310 ~~~---~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~ 382 (441)
... ...+.... .....+.+...+.++.++++......+++++++++++++++.+.|++.|+++..+. .++++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 290 (353)
T 2yrr_A 211 RGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLV 290 (353)
T ss_dssp SCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEE
T ss_pred CCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEE
Confidence 000 00011111 11223456666666556654211122678889999999999999988888876543 566778
Q ss_pred EEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHH-HHHHHHHhh
Q 013521 383 VQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYIS-EACRRLKNF 440 (441)
Q Consensus 383 ~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~-~~l~~l~~~ 440 (441)
++++ +.+..++.+.+.++ ||.+.||..|. .++++|+++. .++++++ +++++|+++
T Consensus 291 ~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~~~~l~~~ 349 (353)
T 2yrr_A 291 VRPPEGVDADRLVRALYAE-GVAVAGGIGPT--RGQVLRLGLMGEGARREAYQAFLKALDRA 349 (353)
T ss_dssp EECCTTCCHHHHHHHHHHT-TEECEECCGGG--TTTCEEEECSGGGSCHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHC-CEEEeCCcccc--CCCeEEEecCccCCHHHHHHHHHHHHHHH
Confidence 9996 45667777777765 99999998664 3578999982 4778888 999999875
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=252.27 Aligned_cols=312 Identities=14% Similarity=0.098 Sum_probs=203.3
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCC--EEEEeCCCc
Q 013521 92 SAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNV--TVAVQDPSF 168 (441)
Q Consensus 92 ~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd--~Vlv~~p~y 168 (441)
+++++.+..+........|++..+..+|++++|+++ +.+ +.|++ +|+++++.+ +..++.+|| .|+++.+.|
T Consensus 25 ~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~----~~~-~~i~~-~~G~~a~~~al~~~~~~gd~~~vi~~~~~~ 98 (357)
T 3lws_A 25 GVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVL----GMD-DAVFF-PSGTMAQQVALRIWSDETDNRTVAYHPLCH 98 (357)
T ss_dssp HHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHH----TCS-EEEEE-SCHHHHHHHHHHHHHHHHTCCEEEECTTCH
T ss_pred HHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHh----CCC-cEEEe-cCcHHHHHHHHHHHhhcCCCcEEEecccce
Confidence 444444443221123346877778999999999997 542 34555 555667776 677778888 677777776
Q ss_pred hhhHh---HHHHhccccccccccCccceeEEeecCCCCCccC-CCCCCCCccEEEEcCCCCcc-ccCCCHHHHHHHHHHH
Q 013521 169 PAYID---TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFP-DLSTTSRTDIIFFCSPNNPT-GHAATWQQLKKLVEFA 243 (441)
Q Consensus 169 ~~~~~---~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~~~~~~~v~i~~p~NPt-G~~~~~~~~~~i~~~a 243 (441)
+.... .....| .+++.++.+. +.+++ ++++..+++++++++||||| |.+++.+++++|+++|
T Consensus 99 ~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~d~~~l~~~~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~ 165 (357)
T 3lws_A 99 LEIHEQDGLKELHP------------IETILVGAAD-RLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYC 165 (357)
T ss_dssp HHHSSTTHHHHHSS------------CEEEECSCTT-SCCCHHHHHTCCSCSEEEEESSBGGGTSBCCCHHHHHHHHHHH
T ss_pred eeeeccchhhhccC------------cEEEEecCCC-CCcCHHHHhcCcCcceEEEEcccccCCceeCCHHHHHHHHHHH
Confidence 65544 233345 4677776422 22221 12233458999999999998 9999999999999999
Q ss_pred HHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhh
Q 013521 244 KANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTC 323 (441)
Q Consensus 244 ~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (441)
++||++||+|++|..........+...+....+ +++.|+||.++.++ .||+++++++ ++.+...+...
T Consensus 166 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~~~~~~--gg~~~~~~~~--------~~~~~~~~~~~ 233 (357)
T 3lws_A 166 RERGIRLHLDGARLFEMLPYYEKTAAEIAGLFD--SIYISFYKGLGGIA--GAILAGPAAF--------CQTARIWKRRY 233 (357)
T ss_dssp HHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSS--EEEEESSSTTCCSS--CEEEEECHHH--------HHHHHHHHHHT
T ss_pred HHcCCEEEEECchhhhhhhhcCCChHHHHhcCC--EEEEeccccCCCCc--eEEEEcCHHH--------HHHHHHHHHHh
Confidence 999999999999862111100122222222223 44789999994233 2999998877 34554443322
Q ss_pred cCC--CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCee-eCCCCceEEEEEcCCC--C-hHHHHHH
Q 013521 324 FNG--ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKV-NGGKNAPYVWVQFPGS--S-SWDVFAE 396 (441)
Q Consensus 324 ~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~--~-~~~~~~~ 396 (441)
... .....+.++.+.+++ +.+. .+.++++++.+.+.|+++ |+++ ..+++++|+|++++.. . ..++.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~----~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (357)
T 3lws_A 234 GGDLISLYPYIVSADYYYEL----RKDR-MGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQV 308 (357)
T ss_dssp TCCCSCCHHHHHHHHHHHHH----HTTC-HHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cCCcccchHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHH
Confidence 211 223334444444432 2233 344677888999999988 8887 3567899999999743 2 3445555
Q ss_pred HHHhcCeEEeCCCCcCCCCCCeEEEEee-----cCHHHHHHHHHHHHhhC
Q 013521 397 ILEKTHILTIPGSGFGPGGNEHIRVSAF-----GHREYISEACRRLKNFL 441 (441)
Q Consensus 397 ll~~~gi~v~pg~~f~~~~~~~iRls~~-----~~~~~~~~~l~~l~~~l 441 (441)
++++||.+.||..|. .+..++|+++. .+++++++++++|.+++
T Consensus 309 -l~~~Gi~v~~g~~~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 309 -QEETGLGFVGYLVDK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp -HHHHCEESCSCCEEC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred -HHhcCeEEecccccC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 455699999997665 35569999864 37899999999998875
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=251.88 Aligned_cols=320 Identities=13% Similarity=0.097 Sum_probs=218.2
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC--CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HH
Q 013521 76 RLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG--AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQ 152 (441)
Q Consensus 76 ~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~ 152 (441)
.+++++|+++.++.+.+++.+++..+........|+ +.....++++.+++++ +.+ +.|++++ +++++.+ +.
T Consensus 24 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~-~~i~~~s-G~~a~~~~l~ 97 (398)
T 2rfv_A 24 TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLE----RGE-AGLATAS-GISAITTTLL 97 (398)
T ss_dssp TCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHH----TCS-EEEEESS-HHHHHHHHHH
T ss_pred CCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHh----CCC-cEEEECC-HHHHHHHHHH
Confidence 578888888877776666666665222112222333 4556778888888876 554 4555555 5589887 67
Q ss_pred HhcCCCCEEEEeCCCchhhHhHH----HHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccc
Q 013521 153 MLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 153 ~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG 228 (441)
.++++||.|+++.|+|+++...+ ...| .+++.++.++-+.+...+ .+++++|++++|+||||
T Consensus 98 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG 163 (398)
T 2rfv_A 98 TLCQQGDHIVSASAIYGCTHAFLSHSMPKFG------------INVRFVDAAKPEEIRAAM--RPETKVVYIETPANPTL 163 (398)
T ss_dssp HHCCTTCEEEEESSSCHHHHHHHHTHHHHTT------------CEEEEECTTSHHHHHHHC--CTTEEEEEEESSBTTTT
T ss_pred HHhCCCCEEEEcCCCcccHHHHHHHHHHHcC------------CEEEEeCCCCHHHHHHhc--CCCCeEEEEECCCCCCC
Confidence 77899999999999999987766 5566 478888764211111111 25789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee-EEEEeecccccc
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYS 307 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~ 307 (441)
.+++ +++|+++|++||+++|+||+|..+.+.. ++ .+ +.++++.|+||.++.+|+|+ ||++++++++
T Consensus 164 ~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~-~~----~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~-- 230 (398)
T 2rfv_A 164 SLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ---PL-QL----GADIVVHSVTKYINGHGDVIGGIIVGKQEFI-- 230 (398)
T ss_dssp BCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC---GG-GG----TCSEEEEETTTTTTCSSCCCCEEEEECHHHH--
T ss_pred cccC---HHHHHHHHHHcCCEEEEECCCcccccCC---ch-hh----CCcEEEEeCcccccCCCCceEEEEEECHHHH--
Confidence 9998 8999999999999999999999765431 11 22 35699999999998899998 9999998774
Q ss_pred CCchhHHHHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC---------------Ce
Q 013521 308 NGYPVIKDFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG---------------LK 371 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------------~~ 371 (441)
.+.+....... ..+.+++.+.++.+.++. . ....+...++.+.+.+.|++++ +.
T Consensus 231 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~---~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~ 300 (398)
T 2rfv_A 231 -----DQARFVGLKDITGGCMSPFNAWLTLRGVKT--L---GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300 (398)
T ss_dssp -----HHHHHTHHHHTTCCCCCHHHHHHHHHHHTT--H---HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHH
T ss_pred -----HHHHHHHHHhCCCCCCCHHHHHHHHhhhhh--H---HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHH
Confidence 11344333333 445788888888888863 1 2333445566777777776542 22
Q ss_pred eeCC---CCceEEEEEcCCCChHHHHHHHHHhc---CeEEeCCCCcC---------------------CCCCCeEEEEee
Q 013521 372 VNGG---KNAPYVWVQFPGSSSWDVFAEILEKT---HILTIPGSGFG---------------------PGGNEHIRVSAF 424 (441)
Q Consensus 372 ~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~v~pg~~f~---------------------~~~~~~iRls~~ 424 (441)
+..+ ..+.++++++++. .+....++++. |+.+.+|+.|. ...+++||||++
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~--~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~ 378 (398)
T 2rfv_A 301 LGQRQMSLPGGIISFEIAGG--LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG 378 (398)
T ss_dssp HHHHHCSSCCSEEEEEETTH--HHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECC
T ss_pred HHHhhCCCCceEEEEEEcCC--HHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEec
Confidence 2111 2467778888742 23334444443 88888887652 012689999984
Q ss_pred c--CHHHHHHHHHHHHhh
Q 013521 425 G--HREYISEACRRLKNF 440 (441)
Q Consensus 425 ~--~~~~~~~~l~~l~~~ 440 (441)
. ++++++.+++.|+++
T Consensus 379 ~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 379 LEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 4 578899998888764
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-31 Score=256.94 Aligned_cols=334 Identities=13% Similarity=0.117 Sum_probs=224.2
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++|++.+. .++. .|+.+.+++.+.+..... ....| +.....++++.+++++ ++++++|++|+|++++
T Consensus 44 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----~~~~~~v~~~~gg~~a 116 (395)
T 1vef_A 44 GNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA--MPQTL-PTPMRGEFYRTLTAIL----PPELNRVFPVNSGTEA 116 (395)
T ss_dssp SCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC--CCTTS-CCHHHHHHHHHHHHTS----CTTEEEEEEESSHHHH
T ss_pred CCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCC--Ccccc-CCHHHHHHHHHHHHhc----CCCcCEEEEcCcHHHH
Confidence 34688998775 3443 789999999999876431 11234 4455677777777764 6778999999999999
Q ss_pred HHH-HHHhc--CCCCEEEEeCCCchhhH-hHHHHhccccc---cccccCccceeEEeecCCCCCccCCCCC--CCCccEE
Q 013521 148 ISR-LQMLL--GSNVTVAVQDPSFPAYI-DTSVIVGQAGK---FLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDII 218 (441)
Q Consensus 148 l~~-l~~l~--~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v 218 (441)
+.+ +..+. .+||.|++.+|+|++.. ..+...|.+.. +.+.. .++..++..+ ..++++ .+++++|
T Consensus 117 ~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~---~~~~~~~~~d----~~~l~~~i~~~~~~v 189 (395)
T 1vef_A 117 NEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLV---EPVEFIPYND----VEALKRAVDEETAAV 189 (395)
T ss_dssp HHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCS---SCEEEECTTC----HHHHHHHCCTTEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCC---CCeeEeCCCc----HHHHHHHhccCEEEE
Confidence 997 44442 67899999999997654 35555553211 00000 1233333211 111111 2568887
Q ss_pred EEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+++.++||||.++ +.+++++|+++|++||+++|+||+|.++...+.+.++....-.++ ++ ||||.++ +|+|+||
T Consensus 190 ~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d--~~--s~sK~~~-~g~~~G~ 264 (395)
T 1vef_A 190 ILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD--IL--TLAKALG-GGVPLGV 264 (395)
T ss_dssp EECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS--EE--EECGGGG-TTSSCEE
T ss_pred EEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCC--EE--EEccccc-CCCceEE
Confidence 7655589999875 688899999999999999999999997654432222222211223 22 8899998 5999999
Q ss_pred EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee--eCC
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV--NGG 375 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~ 375 (441)
++++++++ +.+.........+.+.+.+.++.++++.. .. +...++++++++++.+.|++.+... ..+
T Consensus 265 ~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~al~~~--~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 333 (395)
T 1vef_A 265 AVMREEVA--------RSMPKGGHGTTFGGNPLAMAAGVAAIRYL--ER-TRLWERAAELGPWFMEKLRAIPSPKIREVR 333 (395)
T ss_dssp EEEEHHHH--------HTSCTTSSCCSSTTCHHHHHHHHHHHHHH--HH-HTTHHHHHHHHHHHHHHHHTSCCTTEEEEE
T ss_pred EEehHHHH--------hhhccCCcCCCcCCCHHHHHHHHHHHHHH--Hh-CCHHHHHHHHHHHHHHHHHHhhcCceEEEE
Confidence 99998763 22221111223346788888777777521 11 4567888889999999998875321 122
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 376 KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
..|+++|++++. ...++.+.+++++||.+.|+ +++++||++ ..+++++++++++|++++
T Consensus 334 ~~g~~~~~~~~~-~~~~l~~~l~~~~gi~v~~~------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 334 GMGLMVGLELKE-KAAPYIARLEKEHRVLALQA------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EETTEEEEEESS-CSHHHHHHHHHHHCEECEES------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEcC-hHHHHHHHHHHHCCeEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 467899999974 36678888773559999985 367999986 458999999999998763
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-30 Score=247.16 Aligned_cols=323 Identities=12% Similarity=0.038 Sum_probs=215.5
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC-c-EEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD-E-IFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~-I~~t~G~~~al~~ 150 (441)
..++|+-|. .++|+.+.+++.+.+. .+|. .+..++.+++++++.+.++++++ + +++|+|+++++.+
T Consensus 19 ~~~~~~pgp--~~~~~~v~~a~~~~~~--------~~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~ 86 (376)
T 3f0h_A 19 GMLNFTVGP--VMSSEEVRAIGAEQVP--------YFRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEA 86 (376)
T ss_dssp SCEECSSSS--CCCCHHHHHHHTSCCC--------CCSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHH
T ss_pred CceeecCCC--CCCcHHHHHHhcCCCC--------CCCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHH
Confidence 356666653 4677888888766331 1232 23445556666665554466542 4 4559999999997
Q ss_pred -HHHhcCCCCEEEEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPN 224 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~ 224 (441)
+..++++||+|++++|+|.+.. ..+...| .+++.++.+.+..++++ +++ .++++++++++|+
T Consensus 87 ~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~ 154 (376)
T 3f0h_A 87 VVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHE------------IPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDE 154 (376)
T ss_dssp HHHHHCCTTCCEEEEESSHHHHHHHHHHHHTT------------CCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEE
T ss_pred HHHhccCCCCeEEEEeCChhhHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHHHhhccCceEEEEeccc
Confidence 6778899999999999887754 2344445 47888888654333222 222 3688999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.++| +++|+++|++||+++|+|++++.+.. +..+... +.++++.|+||+++ ++.++|++++++++
T Consensus 155 nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~---~~~~~~~----~~d~~~~s~~K~l~-~~~G~g~~~~~~~~ 223 (376)
T 3f0h_A 155 TSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLAD---PFNMNEC----GADVMITGSQKVLA-CPPGISVIVLAPRG 223 (376)
T ss_dssp TTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEETTTTTC-CCSSCEEEEECHHH
T ss_pred CCcceecC---HHHHHHHHHHcCCEEEEEcCccccCc---ccccccc----CccEEEecCccccc-CCCceEEEEECHHH
Confidence 99999999 99999999999999999999885332 2222222 23589999999998 33347888888876
Q ss_pred cccCCchhHHHHHHHH-----------------hhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHH
Q 013521 305 RYSNGYPVIKDFNRIV-----------------CTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+ +.+.... .....+.+...+.++.+.+...... .+++++++++++++.+.+.|+
T Consensus 224 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 295 (376)
T 3f0h_A 224 V--------ERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIK 295 (376)
T ss_dssp H--------HHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred H--------HHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3 2222100 0112234443333333333311111 367888899999999999999
Q ss_pred hCCCeeeCCCCceEE-EEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 367 SLGLKVNGGKNAPYV-WVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 367 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
++++++..+.....+ ++..++.+..++.+.+++++||.+.||. +....+++||++ ..+++++++++++|+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~--~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~ 370 (376)
T 3f0h_A 296 DLPFELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNG--GEMKDTIFRVGHIGALTHEDNTTLVNAFKDL 370 (376)
T ss_dssp TSSEEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECC--GGGTTTCEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred HcCCccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCc--cccCCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 888777654333332 2333455677788887776699999984 333568999997 35899999999999875
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=249.42 Aligned_cols=329 Identities=13% Similarity=0.057 Sum_probs=224.2
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC--cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE--QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.+.|..|. .+.++.+.+++.+... .+|.+. ....++++.+++++....++++++|++|+|+++++.+
T Consensus 5 ~~~~~~p~p--~~~~~~v~~a~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~ 74 (385)
T 2bkw_A 5 VDTLLIPGP--IILSGAVQKALDVPSL--------GHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDI 74 (385)
T ss_dssp CCEECSSSS--CCCCHHHHHTTSCCCC--------CTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHH
T ss_pred cceeecCCC--cCchHHHHHHHhcccc--------ccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHH
Confidence 346666553 4466777777655321 123221 2467788999998865556678999999999999998
Q ss_pred -HHHhc---CCCCEEEEe-CCCchhhH-hHHHHhccccccccccCccceeEEeec-CCCCCccCCCCC-----C-CCccE
Q 013521 151 -LQMLL---GSNVTVAVQ-DPSFPAYI-DTSVIVGQAGKFLKETGKYRNIVYMNC-RPENNFFPDLST-----T-SRTDI 217 (441)
Q Consensus 151 -l~~l~---~~gd~Vlv~-~p~y~~~~-~~~~~~g~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~~~-----~-~~~~~ 217 (441)
+..+. ++||+|++. .|.|+... ..+...| .+++.++. +.++ ..|++. . .++++
T Consensus 75 ~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~--~~d~~~l~~~l~~~~~~~ 140 (385)
T 2bkw_A 75 FASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYG------------AQVDVVRPLKIGE--SVPLELITEKLSQNSYGA 140 (385)
T ss_dssp HHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTT------------CEEEEECCSSTTS--CCCHHHHHHHHHHSCCSE
T ss_pred HHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcC------------CceEEEecCCCCC--CCCHHHHHHHHhcCCCCE
Confidence 56666 899999887 55665553 5566667 58888888 5432 233221 1 37899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHc--CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC-Cccce
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKAN--GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG-FTGVR 294 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~--~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~-~~G~r 294 (441)
|++++|+||||.+++ +++|+++|++| |++||+|++|+... .+.++..+ +.++++.|+||+++ .+|
T Consensus 141 v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~---~~~~~~~~----~~d~~~~s~~K~~~~~~G-- 208 (385)
T 2bkw_A 141 VTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGC---EEFEFDEW----GVDFALTASQKAIGAPAG-- 208 (385)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTT---SCCCTTTT----TCSEEEEESSSTTCCCSC--
T ss_pred EEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCC---cccccccc----CceEEEecCccccccCCc--
Confidence 999999999999999 77999999999 99999999997321 12222222 34589999999664 455
Q ss_pred eEEEEeeccccc-cCCc--------------hhHHHHHHHHhh---hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013521 295 LGWTVVPEELRY-SNGY--------------PVIKDFNRIVCT---CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE 356 (441)
Q Consensus 295 ~G~l~~~~~~~~-~~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 356 (441)
+||++++++.+. .-.. ............ ...+.+...+.++.++++......+++.++++++
T Consensus 209 ~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 288 (385)
T 2bkw_A 209 LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHRE 288 (385)
T ss_dssp EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 699999887642 1000 000000111111 0134566666666666642111125778899999
Q ss_pred HHHHHHHHH-HhCCCeeeCC-----CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE-ee-----
Q 013521 357 NAKIIVDAF-QSLGLKVNGG-----KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS-AF----- 424 (441)
Q Consensus 357 ~~~~l~~~L-~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls-~~----- 424 (441)
+++++.+.| +++|+++..+ ..++++|+.+++ ..++.+.|. ++||.+.+|..|. ...+++||+ +.
T Consensus 289 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~-~~gi~v~~g~~~~-~~~~~iRis~~~~~~~~ 364 (385)
T 2bkw_A 289 MSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD--PPDVIAFLK-SHGVVIAGGIHKD-IGPKYIRIGHMGVTACN 364 (385)
T ss_dssp HHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC--HHHHHHHHH-HTTEECBCCCCTT-TGGGEEEECCCGGGTSS
T ss_pred HHHHHHHHHHHhcCceecccCcccccCCceEEEecCC--HHHHHHHHH-HCCeEEeCCCCcc-cCCCEEEEEcccccccc
Confidence 999999999 8778877643 257889999974 566777765 4699999987653 246799999 65
Q ss_pred cCHHHHHHHHHHHHhhC
Q 013521 425 GHREYISEACRRLKNFL 441 (441)
Q Consensus 425 ~~~~~~~~~l~~l~~~l 441 (441)
.+++++++++++|++++
T Consensus 365 ~~~e~i~~~~~~l~~~~ 381 (385)
T 2bkw_A 365 KNLPYMKNCFDLIKLAL 381 (385)
T ss_dssp TTCTHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 48899999999998864
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=252.93 Aligned_cols=326 Identities=14% Similarity=0.052 Sum_probs=217.2
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.....++.++++.++++.+.+++.+.+ ....|++..+..++++.+++++ +.+. . ++++|+++++.+
T Consensus 13 ~~~~~~~~~~~~~g~~p~v~~ai~~~~-------~~~~~~~~~~~~~l~~~la~~~----~~~~-~-i~~~~g~~a~~~a 79 (359)
T 3pj0_A 13 TPYKLGGNGPRNVGVLTEALQNIDDNL-------ESDIYGNGAVIEDFETKIAKIL----GKQS-A-VFFPSGTMAQQIA 79 (359)
T ss_dssp CSEESSSSSCCBHHHHHHHTTTSCTTC-------BCCBTTBSHHHHHHHHHHHHHH----TCSE-E-EEESCHHHHHHHH
T ss_pred cchhhcCCCccccCCCHHHHHHHHhhc-------ccCcccCCHHHHHHHHHHHHHh----CCCc-E-EEeCCHHHHHHHH
Confidence 356777777777767788887777732 2235767788999999999997 5433 3 444667778876
Q ss_pred HHHhcCCCCE--EEEeCCCchhhHhH---HHHhccccccccccCccceeEEeecCCCCCccCC-CCC-CCCccEEEEcCC
Q 013521 151 LQMLLGSNVT--VAVQDPSFPAYIDT---SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST-TSRTDIIFFCSP 223 (441)
Q Consensus 151 l~~l~~~gd~--Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~-~~~~~~v~i~~p 223 (441)
+..++.+||. |+++.+.|...... ....| .+++.++.+. ..++++ +++ .+++++|++++|
T Consensus 80 ~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~d~~~l~~~~~~~~~v~~~~p 146 (359)
T 3pj0_A 80 LRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQ------------ITPLLLGTAN-QLLTIDDIKSLREPVSSVLIELP 146 (359)
T ss_dssp HHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHC------------CEEEECSCTT-SCCCHHHHHTCSSCCSEEEEESS
T ss_pred HHHHHhcCCCcEEEEeccceeeehhcchHHHhcC------------ceEEecCCcC-CCcCHHHHHhccCCceEEEEEec
Confidence 6677788876 55555665544322 23456 4777777632 222211 211 468999999999
Q ss_pred CCcc-ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPT-GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|||| |.+++.+++++|+++|++||++||+|++|..+.......+...+....+ +++.||||.++.+ .+ ||++.++
T Consensus 147 ~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~~~~~-~g-g~~~~~~ 222 (359)
T 3pj0_A 147 QREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFD--SVYVSFYKGIGGI-AG-AILAGND 222 (359)
T ss_dssp BGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCS--EEEEESSSTTCCS-SC-EEEEECH
T ss_pred ccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCC--EEEEeccccCCCc-ce-EEEECCH
Confidence 9998 7999999999999999999999999999875432111112222211122 5566899998744 33 8888887
Q ss_pred cccccCCchhHHHHHHHHhhhcCC--CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-CCCCc
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNG--ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVN-GGKNA 378 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~ 378 (441)
++ ++.+...+...... .....+.++...+++ +. +..++++++++.+.+.|+++ |+++. .++.+
T Consensus 223 ~l--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 289 (359)
T 3pj0_A 223 DF--------VQEAKIWKRRYGGDLISLYPYILSADYYFEK----RI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVS 289 (359)
T ss_dssp HH--------HHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH----HG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSS
T ss_pred HH--------HHHHHHHHHHhCCCcchhHHHHHHHHHHHHH----HH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcc
Confidence 77 45555433322211 122333333333321 12 33445778889999999998 88885 45688
Q ss_pred eEEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-----cCHHHHHHHHHHHHhhC
Q 013521 379 PYVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF-----GHREYISEACRRLKNFL 441 (441)
Q Consensus 379 ~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~-----~~~~~~~~~l~~l~~~l 441 (441)
+++|++++.. +..++.+.+ .++||.+.||..|+..+.+++|+++. .+.+++++++++|.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~l-~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l 359 (359)
T 3pj0_A 290 NMFHVYFENSADEIGAILTKIQ-DETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL 359 (359)
T ss_dssp SEEEEEESSCHHHHHHHHHHHH-HHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred eEEEEEecCccchhHHHHHHHH-HhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence 8999988632 233454554 55699999998887666789999874 37899999999999865
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-30 Score=250.86 Aligned_cols=330 Identities=13% Similarity=0.118 Sum_probs=218.1
Q ss_pred CCCeEEeCCCCC--CCC-C-cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcH
Q 013521 71 DARLIRLGIGDT--TQP-I-PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~-~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~ 145 (441)
+..++|++.+.+ ++. . ++.+.+++.+.+..... .....| +.....++++.++++ ++++ +++|++|+|++
T Consensus 41 g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~-~~~~~~-~~~~~~~l~~~la~~----~~~~~~~~v~~~~gg~ 114 (419)
T 2eo5_A 41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH-AAANDF-YNIPQLELAKKLVTY----SPGNFQKKVFFSNSGT 114 (419)
T ss_dssp SCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC-CSCSCS-CCHHHHHHHHHHHHH----SSCSSCEEEEEESSHH
T ss_pred CCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcc-cccccc-CCHHHHHHHHHHHHh----CCCCcCCEEEEeCchH
Confidence 456899988873 332 3 79999999998865321 111224 233345555555555 4776 78999999999
Q ss_pred HHHHH-HHHhcC-CCCEEEEeCCCchhhHhHHHHh-ccc----cccccccCccceeEEeecCCCCCc-------------
Q 013521 146 SDISR-LQMLLG-SNVTVAVQDPSFPAYIDTSVIV-GQA----GKFLKETGKYRNIVYMNCRPENNF------------- 205 (441)
Q Consensus 146 ~al~~-l~~l~~-~gd~Vlv~~p~y~~~~~~~~~~-g~~----~~~~~~~~~~~~v~~v~~~~~~~~------------- 205 (441)
+++.+ +..+.. +||.|++.+|+|+++....... |.. ..+... ..+++.++.+.....
T Consensus 115 ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~g~~~~~~~~~~ 191 (419)
T 2eo5_A 115 EAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPF---MPGVIHVPYPNPYRNPWHINGYENPSEL 191 (419)
T ss_dssp HHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCC---CTTEEEECCCCSSSCTTCCCTTTCHHHH
T ss_pred HHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCC---CCCCEEECCCccccccccccccccchhh
Confidence 99997 443333 4899999999998765544432 210 000000 025666766432100
Q ss_pred ----cCCCC-C--C-----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc
Q 013521 206 ----FPDLS-T--T-----SRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 206 ----~~~~~-~--~-----~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
..+++ + . +++ .+++++| |||||. +.+.+++++|+++|++||+++|+||+|.+|...+....+...
T Consensus 192 ~~~~~~~l~~~~i~~~~~~~~~-~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~ 270 (419)
T 2eo5_A 192 VNRVIEFIEDYIFVNLVPPEEV-AGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENF 270 (419)
T ss_dssp HHHHHHHHHHTHHHHTCCGGGE-EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred HHHHHHHHHHHHHhhccCCCCE-EEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhc
Confidence 11233 2 1 233 4566788 567896 678999999999999999999999999987655432222222
Q ss_pred CCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHH
Q 013521 272 PGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTV 350 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 350 (441)
...++ +.||||.++ +| +|+||++++++++ . +.. ......+.++++|.++.++++. . +++
T Consensus 271 ~~~~d----~~t~sK~~~-~G~~riG~~~~~~~~~-~--------~~~-~~~~t~~~n~~~~~aa~aal~~--~---~~~ 330 (419)
T 2eo5_A 271 NTVPD----VITLAKALG-GGIMPIGATIFRKDLD-F--------KPG-MHSNTFGGNALACAIGSKVIDI--V---KDL 330 (419)
T ss_dssp TCCCS----EEEECGGGG-TTTSCCEEEEEEGGGC-C--------C-------CCCCCHHHHHHHHHHHHH--H---HHH
T ss_pred CCCCC----EEEeccccc-CCccceEEEEEchHhh-c--------CCc-ccCCCCCCCHHHHHHHHHHHHH--H---HHH
Confidence 21222 238999998 69 9999999998874 2 111 1223445789999998888862 1 237
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecC
Q 013521 351 IDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGH 426 (441)
Q Consensus 351 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~ 426 (441)
+++++++++++.+.|+++ +.... ..|+|+|+++.+ .... +...++ ++||.+.|+. .+++||++ ..+
T Consensus 331 ~~~~~~~~~~l~~~L~~~-~~~~~-~~g~~~~i~~~~~~~~~~-~~~~l~-~~Gv~v~~~~------~~~lRis~~~~~t 400 (419)
T 2eo5_A 331 LPHVNEIGKIFAEELQGL-ADDVR-GIGLAWGLEYNEKKVRDR-IIGESF-KRGLLLLPAG------RSAIRVIPPLVIS 400 (419)
T ss_dssp HHHHHHHHHHHHHHHTTS-SSEEE-EETTEEEEECSCHHHHHH-HHHHHH-HTTEECEEET------TTEEEECCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHh-hhheE-eeeEEEEEEEecCccHHH-HHHHHH-HCCCEEecCC------CCEEEEECCCCCC
Confidence 888999999999999876 43333 357889999842 1234 666666 5699999863 57899975 568
Q ss_pred HHHHHHHHHHHHhh
Q 013521 427 REYISEACRRLKNF 440 (441)
Q Consensus 427 ~~~~~~~l~~l~~~ 440 (441)
++++++++++|+++
T Consensus 401 ~e~i~~~l~~l~~~ 414 (419)
T 2eo5_A 401 EEEAKQGLDILKKV 414 (419)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=243.54 Aligned_cols=327 Identities=12% Similarity=0.120 Sum_probs=219.9
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCC-CC---CCCCCCCcCcHHHHHHHHHHHhhhCCCCCC-c-EEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTV-KG---YKGYGAEQGNMALRTAIADKFYKDMGIEGD-E-IFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~-~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~-I~~t~G~~~ 146 (441)
.++.+..|. .++|+.+.+++.+.+.+.... .. ..+| ..+..++++++++.+.+.++++++ + |++|+|+++
T Consensus 4 ~~~l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~ 79 (362)
T 2c0r_A 4 RAYNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHR--GAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGAST 79 (362)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT--SHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHH
T ss_pred ceeeccCCC--CCCCHHHHHHHHHHHhhhhhcCccccccCCC--cHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchH
Confidence 356666663 578899999999987543210 01 1223 224456677777777666688764 6 568899999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCC--CCCccCCCC---CCCCccEE
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRP--ENNFFPDLS---TTSRTDII 218 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~~---~~~~~~~v 218 (441)
++++ +..++++||+|++..+.+.+. ...++..| +++.++.+. +.++.++.+ ..+++++|
T Consensus 80 a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-------------~~~~v~~~~~~~~~~~~~~~~~~i~~~t~~v 146 (362)
T 2c0r_A 80 QFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-------------DTHVAASSEASNYMTLPKLQEIQLQDNAAYL 146 (362)
T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-------------CEEEEEECGGGTTCSCCCGGGCCCCTTEEEE
T ss_pred HHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-------------CeEEEecccccccccCCCHHHcccCCCcCEE
Confidence 9997 677889999999887775553 34555556 455566542 122223322 24689999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++++|+||||.+++ ++++| +|+++|+|++|+.+.. +.++.. ..+++.|+||++|++| +||+
T Consensus 147 ~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~---~~~~~~------~d~~~~s~~K~~g~~G--~G~l 207 (362)
T 2c0r_A 147 HLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSR---PFDLNQ------FGLVYAGAQKNLGPSG--VTVV 207 (362)
T ss_dssp EEESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSS---CCCGGG------CSEEEEETTTTTCCSS--CEEE
T ss_pred EEeCCcCccceecc--ccccc------CCCEEEEEChhhccCC---ccchhH------CcEEEEeccccccCcC--cEEE
Confidence 99999999999755 25555 8999999999985432 222221 2388889999999788 9999
Q ss_pred EeeccccccCCch--hHHHHHH--HHhhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhCC-C-e
Q 013521 299 VVPEELRYSNGYP--VIKDFNR--IVCTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSLG-L-K 371 (441)
Q Consensus 299 ~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~-~ 371 (441)
+++++++..-... ..-.+.. .......+++.+.|.++.++++..... ++++++++++++++++.+.|++++ + +
T Consensus 208 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 287 (362)
T 2c0r_A 208 IVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYR 287 (362)
T ss_dssp EEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSE
T ss_pred EEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 9998875221100 0000000 011223457778888888777521112 568889999999999999999887 6 6
Q ss_pred eeCC---CCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 372 VNGG---KNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 372 ~~~~---~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
+..+ ..+.++|+.++. .+..++.+.| +++||.+.||..| .++||||++. ++++++++++.|+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gi~~~~g~~~----~~~iRis~~~~~~~e~i~~l~~~l~~~ 357 (362)
T 2c0r_A 288 GCVDVDSRSDMNITFRLASEELEKEFVKAS-EQEGFVGLKGHRS----VGGLRASIYNAVPYESCEALVQFMEHF 357 (362)
T ss_dssp ESSCGGGBCSSEEEEECSCHHHHHHHHHHH-HHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCChHHcCCcEEEEEcCCcchHHHHHHHH-HHCCCeeccCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6321 245678998873 2345666665 4559999998765 3579999853 799999999999875
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=257.60 Aligned_cols=328 Identities=16% Similarity=0.128 Sum_probs=212.1
Q ss_pred CeEEeCCC-CCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH
Q 013521 73 RLIRLGIG-DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL 151 (441)
Q Consensus 73 ~~i~l~~g-~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l 151 (441)
++++|+.| +++++.|+.+.+++......... .+...|+ ..|.+ +++++++++.+.++. +++++++|+++++.++
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~-~~~~~Y~-~~g~~-~~~~l~~~la~~~g~--~~~i~~~sGt~al~~~ 164 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAIE-NGPYDYT-RSGNP-TRDALESLLAKLDKA--DRAFCFTSGMAALSAV 164 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSC-CCSCSBT-TTCCH-HHHHHHHHHHHHHTC--SEEEEESSHHHHHHHH
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhcccc-cCCcccc-CCCCH-HHHHHHHHHHHHhCC--CeEEEECCHHHHHHHH
Confidence 47899997 78888777776666543111111 3345675 34555 788888887765564 3677777778899876
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHH----HHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCcc
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPT 227 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPt 227 (441)
..++++||+|++++|+|+++...+ ...| .+++.++.++.+.+...+ .+++++|++++|+|||
T Consensus 165 l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G------------~~v~~v~~~d~~~l~~~i--~~~tk~v~l~~p~Npt 230 (464)
T 1ibj_A 165 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG------------VVVKRVNTTKLDEVAAAI--GPQTKLVWLESPTNPR 230 (464)
T ss_dssp HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGT------------CEEEEECTTSHHHHHHHC--CSSEEEEEECSSCTTT
T ss_pred HHHhCCCCEEEEECCCchhHHHHHHHHHHHcC------------CEEEEeCCCCHHHHHHHh--ccCceEEEEeCCCCCC
Confidence 568899999999999999987643 3345 478888764211111111 3679999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc-cceeEEEEeeccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT-GVRLGWTVVPEELRY 306 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~-G~r~G~l~~~~~~~~ 306 (441)
|.+++ +++|+++|++||+++|+||+|..... ..++ . .++++++.|+||.++.+ |+|+||++++++.+
T Consensus 231 G~v~~---l~~i~~la~~~gi~livDea~~~g~~---~~~~-~----~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l- 298 (464)
T 1ibj_A 231 QQISD---IRKISEMAHAQGALVLVDNSIMSPVL---SRPL-E----LGADIVMHSATKFIAGHSDVMAGVLAVKGEKL- 298 (464)
T ss_dssp CCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT---CCGG-G----TTCSEEEEETTTTTTCSSCCCCEEEEECSHHH-
T ss_pred CEeec---HHHHHHHHHHcCCEEEEECCCccccc---CChh-h----cCCEEEEECCcccccCCCCCcEEEEEEChHHH-
Confidence 99998 89999999999999999999985221 1112 1 24579999999988743 89999999986332
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH----------HHHHhC-CCeeeCC
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV----------DAFQSL-GLKVNGG 375 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~----------~~L~~~-g~~~~~~ 375 (441)
.+.+.........+.+++.|.++.+.++... ..+++..+......+++. +.|+++ ++++..+
T Consensus 299 ------~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~-~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~ 371 (464)
T 1ibj_A 299 ------AKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA-LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFS 371 (464)
T ss_dssp ------HHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTT
T ss_pred ------HHHHHHHHHhcCCCCCHHHHHHHHhchhhHH-HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhc
Confidence 4555555544445567888888888876321 111222121222222221 122222 3444333
Q ss_pred C---CceEEEEEcCCCChH-HHHHHHHHhcCeEEeCCC------------CcCC---------CCCCeEEEEeecCHHHH
Q 013521 376 K---NAPYVWVQFPGSSSW-DVFAEILEKTHILTIPGS------------GFGP---------GGNEHIRVSAFGHREYI 430 (441)
Q Consensus 376 ~---~~~~~~~~~~~~~~~-~~~~~ll~~~gi~v~pg~------------~f~~---------~~~~~iRls~~~~~~~~ 430 (441)
. .|.++|+++++.... .+++. ++..||.+++|. .|.. .++++|||++.. +++
T Consensus 372 ~~~g~g~~~~~~l~~~~~~~~~~~~-L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi 448 (464)
T 1ibj_A 372 QAKGAGSVFSFITGSVALSKHLVET-TKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDV 448 (464)
T ss_dssp TCSCCCSEEEEECSCHHHHHHHHHH-CSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCH
T ss_pred cCCCCceEEEEEECCHHHHHHHHHh-cCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCH
Confidence 2 356899998531122 24444 344689998886 1221 225799999876 788
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
++++++|++++
T Consensus 449 ~~li~~L~~al 459 (464)
T 1ibj_A 449 DDLISDLDIAF 459 (464)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888753
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-29 Score=242.49 Aligned_cols=313 Identities=15% Similarity=0.144 Sum_probs=219.6
Q ss_pred CCCCCCC-c---HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh
Q 013521 80 GDTTQPI-P---DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML 154 (441)
Q Consensus 80 g~~~~~~-~---~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l 154 (441)
++|+++. | +.+.+++.+.+.. +...|.+..+..++|+++|+++ +.+ ++|++++| ++++.+ +..+
T Consensus 5 ~~p~f~~~p~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~l~~~la~~~----~~~-~~i~~~sG-t~al~~~l~~l 73 (388)
T 1b9h_A 5 KAPEFPAWPQYDDAERNGLVRALEQ-----GQWWRMGGDEVNSFEREFAAHH----GAA-HALAVTNG-THALELALQVM 73 (388)
T ss_dssp CCCCCCCSSCCCHHHHHHHHHHHHT-----SCCBTTTCSHHHHHHHHHHHHT----TCS-EEEEESCH-HHHHHHHHHHT
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHc-----CCeeecCCHHHHHHHHHHHHHh----CCC-eEEEeCCH-HHHHHHHHHHc
Confidence 4567765 6 8899999998864 2234666778999999999997 544 67888887 789987 6667
Q ss_pred -cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCCccc
Q 013521 155 -LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 155 -~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG 228 (441)
+++||+|+++.|+|+++...+...| .+++.++++++ ++..+++. .+++++|+ |+||||
T Consensus 74 ~~~~gd~Vi~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n~tG 137 (388)
T 1b9h_A 74 GVGPGTEVIVPAFTFISSSQAAQRLG------------AVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIM---PVHMAG 137 (388)
T ss_dssp TCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCCBCHHHHHHHCCTTEEEEC---CBCGGG
T ss_pred CCCCcCEEEECCCccHHHHHHHHHcC------------CEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCcc
Confidence 7999999999999999999998888 58899998764 23333321 25677655 999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS 307 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~ 307 (441)
.+.+ +++|+++|++||++||+|++|+.+. +.+ .++..+ . ++.+.||||..+++|.|+||++++++.+..
T Consensus 138 ~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~~~--~~~~~~---~--~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~ 207 (388)
T 1b9h_A 138 LMAD---MDALAKISADTGVPLLQDAAHAHGARWQG--KRVGEL---D--SIATFSFQNGKLMTAGEGGAVVFPDGETEK 207 (388)
T ss_dssp CCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETT--EEGGGS---S--SCEEEECCTTSSSCSSSCEEEEECTTCHHH
T ss_pred CcCC---HHHHHHHHHHcCCEEEEecchhcCCccCC--eecccc---c--ceEEEEccCCCcccCCCeEEEEECCHHHHH
Confidence 9988 8899999999999999999998632 322 222222 1 478899996665667799999998764200
Q ss_pred CCchhHHHHHHHHhhh--------------cC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 013521 308 NGYPVIKDFNRIVCTC--------------FN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK 371 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 371 (441)
.+.+....... .+ ..+.+...++... .+++++.+++++++++++.+.|+++ |+.
T Consensus 208 -----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~-----~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 277 (388)
T 1b9h_A 208 -----YETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ-----LARLDEQIAVRDERWTLLSRLLGAIDGVV 277 (388)
T ss_dssp -----HHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred -----HHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 12222221110 00 1233332222222 2345778888899999999999987 787
Q ss_pred eeC------CCCceEEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCCcCC-----------C----------------C
Q 013521 372 VNG------GKNAPYVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGP-----------G----------------G 415 (441)
Q Consensus 372 ~~~------~~~~~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~-----------~----------------~ 415 (441)
+.. +.+++++|+.+++. +..++.+.|.+ +||.++++..-.. . .
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (388)
T 1b9h_A 278 PQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVE-AGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAIS 356 (388)
T ss_dssp ECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHH-TTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHH
T ss_pred ccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHH-CCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHH
Confidence 764 24578999999853 34566677665 5999988643100 0 0
Q ss_pred CCeEEEEe--ec-CHHHHHHHHHHHHhh
Q 013521 416 NEHIRVSA--FG-HREYISEACRRLKNF 440 (441)
Q Consensus 416 ~~~iRls~--~~-~~~~~~~~l~~l~~~ 440 (441)
.+.|||++ .. ++++++++++.|+++
T Consensus 357 ~~~l~l~~~~~~~t~edi~~~~~~l~~~ 384 (388)
T 1b9h_A 357 SDCVWLHHRVLLAGEPELHATAEIIADA 384 (388)
T ss_dssp HHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred hCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 13699997 34 789999999999875
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-29 Score=246.87 Aligned_cols=322 Identities=13% Similarity=0.126 Sum_probs=215.1
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
..+|+..+....+.++.+.+++.. . ...|.+..+..+||+++|+++ +. +++++|+|+++++.+ +
T Consensus 43 ~ylD~~~~~~~~~~~~~~~~a~~~--------~-~~~y~~~~~~~~l~~~la~~~----~~--~~~~~~~~gt~a~~~al 107 (456)
T 2ez2_A 43 IYIDLLTDSGTNAMSDKQWAGMMM--------G-DEAYAGSENFYHLERTVQELF----GF--KHIVPTHQGRGAENLLS 107 (456)
T ss_dssp CSEECSCSSSCCCCCHHHHHHHTT--------C-CCCSSSCHHHHHHHHHHHHHH----CC--SEEEEESSHHHHHHHHH
T ss_pred ceeeeccccCCccCCHHHHHHhhc--------c-hhhcccChhHHHHHHHHHHHh----CC--CcEEEeCCcHHHHHHHH
Confidence 356666655444556666666541 1 235777788999999999997 33 589999999999987 6
Q ss_pred HHhcCCCCEEEEeCCCc-hhhHhHHHHhccccccccccCccceeEEeecCCC----C----CccCCCCC-----CCC---
Q 013521 152 QMLLGSNVTVAVQDPSF-PAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE----N----NFFPDLST-----TSR--- 214 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y-~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~----~----~~~~~~~~-----~~~--- 214 (441)
..++++|| +++.|+| +.+...+...| .+++.++++.+ . ++..|++. .++
T Consensus 108 ~~l~~~gd--i~~~~~~~~~~~~~~~~~G------------~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~ 173 (456)
T 2ez2_A 108 QLAIKPGQ--YVAGNMYFTTTRYHQEKNG------------AVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAE 173 (456)
T ss_dssp HHHCCTTC--EEEESSCCHHHHHHHHHTT------------CEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG
T ss_pred HHhCCCCC--EeccccccchhHHHHHHcC------------CEEEEecccccccccccccccCCCCHHHHHHHHHhcccc
Confidence 77789999 7889999 77788888888 57888887631 1 12333221 122
Q ss_pred -ccEEEEcCCCC-ccccCCCHHHHHHHHHHHHHcCcEEEEcccccc----------cccCCCCC-ccc-ccCCCcceeEE
Q 013521 215 -TDIIFFCSPNN-PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA----------YITDPSPR-SIY-EIPGAREVAIE 280 (441)
Q Consensus 215 -~~~v~i~~p~N-PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~----------~~~~~~~~-~~~-~~~~~~~~~i~ 280 (441)
+++|++++|+| |||.+++.+++++|+++|++||+++|+||+|.. +.+.+.+. ++. .+....+ +++
T Consensus 174 ~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d-~~~ 252 (456)
T 2ez2_A 174 NIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD-GCT 252 (456)
T ss_dssp GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS-EEE
T ss_pred ceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCC-EEE
Confidence 48899999998 999999999999999999999999999999985 23433221 110 1111223 344
Q ss_pred EecCCcccCCccceeEEEEe-eccccccCCchhHHHHHHHHhhh-----cCCCcHHHHHH-HHHhcCCCcHHHH-HHHHH
Q 013521 281 ISSFSKFAGFTGVRLGWTVV-PEELRYSNGYPVIKDFNRIVCTC-----FNGASNIVQAG-GLACLSPDGFQAL-RTVID 352 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a-~~~~l~~~~~~~~-~~~~~ 352 (441)
+ |++|..+ +| |.||+++ ++++ .+.+....... ..+.+.....+ +.+.++ .+ +...+
T Consensus 253 ~-S~kk~~~-~~-~gG~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~-----~~~~~~~~ 316 (456)
T 2ez2_A 253 M-SGKKDCL-VN-IGGFLCMNDDEM--------FSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE-----AMQYEYIE 316 (456)
T ss_dssp E-ETTTTTC-CS-SCEEEEESCHHH--------HHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHH-----HTCHHHHH
T ss_pred E-eCcccCC-CC-ceeEEEECCHHH--------HHHHHHHHhhccCcccccCcchhHHHHHHHHHHH-----HhHHHHHH
Confidence 4 7888765 67 7899998 4555 34444333221 11223222222 333332 11 23444
Q ss_pred HHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEc----CCCChHHH-----HHHHHHhcCeEEeC-CCCcC----------
Q 013521 353 YYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQF----PGSSSWDV-----FAEILEKTHILTIP-GSGFG---------- 412 (441)
Q Consensus 353 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~ll~~~gi~v~p-g~~f~---------- 412 (441)
+.+++.+.+.+.|++.|+++..+.+++++|+++ ++.+..++ ...|++++||.+.+ |..|.
T Consensus 317 ~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~ 396 (456)
T 2ez2_A 317 HRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHH 396 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBC
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccc
Confidence 455566778888887788777677899999987 33334444 66665677999766 54331
Q ss_pred CCCCCeEEEEee---cCHHHHHHHHHHHHhh
Q 013521 413 PGGNEHIRVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 413 ~~~~~~iRls~~---~~~~~~~~~l~~l~~~ 440 (441)
..+.++|||++. .+++++++++++|+++
T Consensus 397 ~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~ 427 (456)
T 2ez2_A 397 RPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427 (456)
T ss_dssp CCSCCEEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 122478999985 6899999999999875
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=250.60 Aligned_cols=330 Identities=12% Similarity=0.107 Sum_probs=218.1
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++||+.|. .++ ..++.+.+++.+.+..... ....| +.....++++.++++ ++ +++|++|+|++++
T Consensus 56 g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~----~g--~~~v~~~~ggteA 126 (420)
T 2pb2_A 56 GKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWH--TSNVF-TNEPALRLGRKLIDA----TF--AERVLFMNSGTEA 126 (420)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCC--CCTTS-CCHHHHHHHHHHHHH----SS--CSEEEEESSHHHH
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhccc--ccCcc-CCHHHHHHHHHHHhh----CC--CCeEEEeCCHHHH
Confidence 45789998772 222 3678999999998875421 11123 233344555555554 34 5899999999999
Q ss_pred HHH-HHHhcC-------CC-CEEEEeCCCchhhHhH-HHHhccccc---cccccCccceeEEeecCCCCCccCCCCC--C
Q 013521 148 ISR-LQMLLG-------SN-VTVAVQDPSFPAYIDT-SVIVGQAGK---FLKETGKYRNIVYMNCRPENNFFPDLST--T 212 (441)
Q Consensus 148 l~~-l~~l~~-------~g-d~Vlv~~p~y~~~~~~-~~~~g~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~ 212 (441)
+.+ +..+.. +| +.|++.+|+|++.... ....|.... +.+.. ..+..++.++ ..++++ .
T Consensus 127 ~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~---~~~~~~~~~d----~~~le~~i~ 199 (420)
T 2pb2_A 127 NETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKP---ADIIHVPFND----LHAVKAVMD 199 (420)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCC---SCEEEECTTC----HHHHHHHCC
T ss_pred HHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCC---CCeEEecCCC----HHHHHHHhc
Confidence 997 444443 67 5999999999887544 334442100 00000 1255555421 111211 2
Q ss_pred CCccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 213 SRTDIIFFCSPNNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++++|+++.++||+|. +++.+++++|.++|++||+++|+||+|.++...+.+.+.....-.+| ++ ||||.++ +
T Consensus 200 ~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~d--ii--t~sK~l~-~ 274 (420)
T 2pb2_A 200 DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPD--IL--TSAKALG-G 274 (420)
T ss_dssp TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS--EE--EECGGGG-T
T ss_pred cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCC--eE--Eeccccc-C
Confidence 57888888777888884 69999999999999999999999999987765543322222221233 22 7899998 9
Q ss_pred cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--C
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--G 369 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g 369 (441)
|+|+||++++++++ +.+.........+.+++.+.++.+.++.... +++.++++++++++.+.|+++ +
T Consensus 275 G~~iG~~~~~~~l~--------~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 343 (420)
T 2pb2_A 275 GFPVSAMLTTQEIA--------SAFHVGSHGSTYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQ 343 (420)
T ss_dssp TSCCEEEEECHHHH--------TTCC----CCEECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEhHHHH--------HhhcCCCcCcccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998763 2222111223345788888888887763211 456677788888888888764 2
Q ss_pred C---eeeCCCCceEEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 370 L---KVNGGKNAPYVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 370 ~---~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
+ .... ..|+++|++++.. +..++.+.+++ +||.+.|+. ++++||++ ..+++++++++++|+++
T Consensus 344 ~~~~~~~~-~~g~~~~v~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~------~~~iRl~~~~~~t~eei~~~~~~l~~~ 414 (420)
T 2pb2_A 344 FDIFSDIR-GMGLLIGAELKPKYKGRARDFLYAGAE-AGVMVLNAG------ADVMRFAPSLVVEEADIHEGMQRFAQA 414 (420)
T ss_dssp HCCEEEEE-EETTEEEEEECGGGTTCHHHHHHHHHH-TTEECEESS------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEE-ecceEEEEEECCCchHHHHHHHHHHHH-CCCEEEeCC------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2 2223 3578899998732 45677777776 599999863 57899994 56899999999999875
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=246.13 Aligned_cols=327 Identities=13% Similarity=0.119 Sum_probs=218.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC-CCC--CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK-GYG--AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~-~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
+.+.|+.+.++ +.|+.+.+++.+.+.......... .|. ......++++.+++++ ++++++|++|+|+++++.
T Consensus 28 ~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~al~ 102 (416)
T 1qz9_A 28 GVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI----GARDGEVVVTDTTSINLF 102 (416)
T ss_dssp TCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT----TCCTTSEEECSCHHHHHH
T ss_pred CeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc----CCCcccEEEeCChhHHHH
Confidence 57889888776 678889999999886421000000 111 1234456677777664 788899999999999997
Q ss_pred H-HHHhc------CCCCE-EEEeCCCchhhHhHHHH----h--ccccccccccCccceeEEeecCCCCCccCCCCCCCCc
Q 013521 150 R-LQMLL------GSNVT-VAVQDPSFPAYIDTSVI----V--GQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRT 215 (441)
Q Consensus 150 ~-l~~l~------~~gd~-Vlv~~p~y~~~~~~~~~----~--g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 215 (441)
+ +..++ ++||+ |++..++|+++...+.. . | .+++.++. . +.+...+ .+++
T Consensus 103 ~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~-~-~~l~~~i--~~~~ 166 (416)
T 1qz9_A 103 KVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQG------------YTLRLVDS-P-EELPQAI--DQDT 166 (416)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSS------------CEEEEESS-G-GGHHHHC--STTE
T ss_pred HHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCC------------ceEEEeCc-H-HHHHHHh--CCCc
Confidence 5 55555 89987 55556688766544332 2 5 47777775 1 1111111 2578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
++|++++|+||||.+++ +++|.++|++||+++|+|++|+. ...+..+..+ +..+++.|+||+++ +|.++
T Consensus 167 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---g~~~~~~~~~----~~d~~~~s~~K~l~-~g~~~ 235 (416)
T 1qz9_A 167 AVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA---GAVPVDLHQA----GADYAIGCTYKYLN-GGPGS 235 (416)
T ss_dssp EEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT---TTSCCCHHHH----TCSEEEECSSSTTC-CCTTC
T ss_pred eEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccc---cCcCCChhhc----CCCEEEecCcccCC-CCCCC
Confidence 99999999999999999 88999999999999999999983 1112223222 23488999999985 78888
Q ss_pred -EEEEeeccccccCCchhHHHHHH---------------HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 013521 296 -GWTVVPEELRYSNGYPVIKDFNR---------------IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAK 359 (441)
Q Consensus 296 -G~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (441)
||++++++++..-.......+.. .......+.+...+.++.++++.....++++++++++++++
T Consensus 236 ~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 315 (416)
T 1qz9_A 236 QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTD 315 (416)
T ss_dssp CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999988742110000000000 01112233566666555555542111235778899999999
Q ss_pred HHHHHHHhC----CCeeeCCC----CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee---cCHH
Q 013521 360 IIVDAFQSL----GLKVNGGK----NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF---GHRE 428 (441)
Q Consensus 360 ~l~~~L~~~----g~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~---~~~~ 428 (441)
++.+.|++. |+++..+. .++++|++++. ..++.+.|. ++||.+... +.+++||++. .+++
T Consensus 316 ~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~-~~gi~~~~~------~~~~lRis~~~~~~t~~ 386 (416)
T 1qz9_A 316 LFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE--GYAVIQALI-DRGVIGDYR------EPRIMRFGFTPLYTTFT 386 (416)
T ss_dssp HHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--HHHHHHHHH-TTTEECEEE------TTTEEEEECCTTTCCHH
T ss_pred HHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC--HHHHHHHHH-hCCcEeccC------CCCeEEEeCcccCCCHH
Confidence 999999886 78876653 36789999873 566767666 459987531 3579999985 3899
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|+++
T Consensus 387 ~i~~~~~~l~~~ 398 (416)
T 1qz9_A 387 EVWDAVQILGEI 398 (416)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-29 Score=241.94 Aligned_cols=340 Identities=13% Similarity=0.067 Sum_probs=215.5
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|++.+. ..+. .++.+.+++.+.+.+.. +.| ..+..++++++++++.+..+ +++|++|+|++++
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~--~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~ea 105 (395)
T 3nx3_A 35 AKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLL-----HTS--NLYYNENIAAAAKNLAKASA--LERVFFTNSGTES 105 (395)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCS-----CCC--TTSBCHHHHHHHHHHHHHHT--CSEEEEESSHHHH
T ss_pred CCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcc-----ccc--cccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHHH
Confidence 45689998873 3333 57999999999886532 111 11223445555555544334 6899999999999
Q ss_pred HHH-HHHhc-------CCCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCCCccCCCCCCCCccEE
Q 013521 148 ISR-LQMLL-------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPENNFFPDLSTTSRTDII 218 (441)
Q Consensus 148 l~~-l~~l~-------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v 218 (441)
+.. +..+. .++|.|++.+|+|+++.......+....+.. ......++..++.++-+.+...+ .+++++|
T Consensus 106 ~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~~v 183 (395)
T 3nx3_A 106 IEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLV--NEKTCAI 183 (395)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTC--CTTEEEE
T ss_pred HHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhc--cCCeEEE
Confidence 987 44333 4679999999999987655544432111000 00000245555543211111111 2567787
Q ss_pred EEcCCCCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+++.++|++|.+ ++++++++|.++|++||+++|+||+|.+|...+.........-.+ .+.||||.++ +|+|+||
T Consensus 184 ~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~----d~~t~sK~~~-~G~~~G~ 258 (395)
T 3nx3_A 184 ILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILP----DIMTSAKALG-CGLSVGA 258 (395)
T ss_dssp EEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCC----SEEEECGGGT-TTSCCEE
T ss_pred EEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCC----CEEEeccccc-CCCceEE
Confidence 777667777766 788999999999999999999999999876544332222222122 2457999998 6999999
Q ss_pred EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHhCC-CeeeCC
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-FQALRTVIDYYKENAKIIVDAFQSLG-LKVNGG 375 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~ 375 (441)
++++++++ .+.+.........+.+++++.++.++++... ..+.++.++..+..++.+.+.+.++. +....
T Consensus 259 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 330 (395)
T 3nx3_A 259 FVINQKVA-------SNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRK- 330 (395)
T ss_dssp EEECHHHH-------HHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-
T ss_pred EEEchhhh-------hhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-
Confidence 99988762 1223222223344578899988888886211 12234444444444444444444443 33333
Q ss_pred CCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 376 KNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 376 ~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
..|+++|+.++.. ...++...+++ +||.+.|+. ++++||++ ..+++++++++++|++++
T Consensus 331 ~~g~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~iRi~~~~~~t~e~i~~~l~~l~~~l 392 (395)
T 3nx3_A 331 GLGFMQGLSLDKSVKVAKVIQKCQE-NALLLISCG------ENDLRFLPPLILQKEHIDEMSEKLRKAL 392 (395)
T ss_dssp EETTEEEEEECTTSCHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEeCCcchHHHHHHHHHH-CCCEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999743 45667777665 499999863 67999984 558999999999998763
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-30 Score=252.51 Aligned_cols=342 Identities=11% Similarity=0.020 Sum_probs=215.0
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++|+..+.+ ++. .++.+.+++.+.+..... ....| +.....++++.++++ ++.++++|++|+|++++
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~----~~~~~~~v~~~~gg~ea 114 (433)
T 1zod_A 42 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH--LFSEM-LSRPVVDLATRLANI----TPPGLDRALLLSTGAES 114 (433)
T ss_dssp CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC--CCTTC-CCHHHHHHHHHHHHH----SCTTCCEEEEESCHHHH
T ss_pred CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcc--ccccc-CCHHHHHHHHHHHHh----CCCCcCEEEEeCchHHH
Confidence 356788866653 232 478999999999876421 11234 222344555555554 57778999999999999
Q ss_pred HHH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC--CCCcc----------C-CCCC
Q 013521 148 ISR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP--ENNFF----------P-DLST 211 (441)
Q Consensus 148 l~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~--~~~~~----------~-~~~~ 211 (441)
+.. +..+. ..+|.|++.+|+|++.......................+..++... ...+. . ++++
T Consensus 115 ~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~ 194 (433)
T 1zod_A 115 NEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFD 194 (433)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHH
Confidence 997 43332 3468999999999887554443321100000000001334444321 11111 1 1221
Q ss_pred --C----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEec
Q 013521 212 --T----SRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISS 283 (441)
Q Consensus 212 --~----~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 283 (441)
. +++++ ++++| +||||. +.+++++++|+++|++||+++|+||+|.+|...+....+....-.++ +.|
T Consensus 195 ~l~~~~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~d----i~s 269 (433)
T 1zod_A 195 LIDRQSSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD----ILT 269 (433)
T ss_dssp HHHHHCCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----EEE
T ss_pred HHHhcCCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCC----EEE
Confidence 1 34555 55677 688996 57899999999999999999999999998765443222222211222 348
Q ss_pred CCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhh--hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 284 FSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCT--CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 284 ~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
|||.++ +|+|+||+++++++ ++.+...... ...+.+++++.++.++++... + +...++++++++.+
T Consensus 270 ~sK~~~-~G~~ig~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~-~--~~~~~~~~~~~~~l 337 (433)
T 1zod_A 270 LSKTLG-AGLPLAAIVTSAAI--------EERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ-R--DGLVARANVMGDRL 337 (433)
T ss_dssp ECHHHH-TTSSCEEEEECHHH--------HHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHH-H--TTHHHHHHHHHHHH
T ss_pred eccccc-CCCCeeEEEEhHHH--------HHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHH-h--CCHHHHHHHHHHHH
Confidence 999998 69999999999877 3444432111 334568888888888875211 1 22445566666666
Q ss_pred HHHHHhC----C-CeeeCCCCceEEEEEcCC---------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ec
Q 013521 362 VDAFQSL----G-LKVNGGKNAPYVWVQFPG---------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FG 425 (441)
Q Consensus 362 ~~~L~~~----g-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~ 425 (441)
.+.|+++ + +.... ..|+|+|++++. ....++...+++ +||.+.||..|+ .++++||++ ..
T Consensus 338 ~~~l~~l~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~--~~~~lRi~~~~~~ 413 (433)
T 1zod_A 338 RRGLLDLMERFDCIGDVR-GRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLPG--MGGVFRIAPPLTV 413 (433)
T ss_dssp HHHHHHHHHHCTTEEEEE-EETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCTT--SCCEEEECCCTTC
T ss_pred HHHHHHHHHhCCCeEEEE-EEEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEeccCCCC--CCCEEEEECCcCC
Confidence 6666553 2 22333 357888998852 124567777765 599999988765 357999974 56
Q ss_pred CHHHHHHHHHHHHhh
Q 013521 426 HREYISEACRRLKNF 440 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~ 440 (441)
+++++++++++|+++
T Consensus 414 t~~~i~~~l~~l~~~ 428 (433)
T 1zod_A 414 SEDEIDLGLSLLGQA 428 (433)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 899999999999875
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=244.07 Aligned_cols=336 Identities=10% Similarity=0.026 Sum_probs=218.5
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++|++.+.+ ++. .++.+.+++.+.+..... .....|. .....++++.+++++ ++++++|++|+|++++
T Consensus 42 g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-~~~~~~~-~~~~~~l~~~la~~~----~~~~~~v~~~~ggtea 115 (429)
T 1s0a_A 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGIT-HAPAIELCRKLVAMT----PQPLECVFLADSGSVA 115 (429)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC-CCCSSEE-CHHHHHHHHHHHHHS----CTTCCEEEEESSHHHH
T ss_pred CCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc-ccccccC-CHHHHHHHHHHHHhC----CCCCCEEEEeCCHHHH
Confidence 456889988863 333 579999999999875321 1112342 233466777777764 6788999999999999
Q ss_pred HHH-HHHhc---C----CCCEEEEeCCCchhhHhHHHHhccc-----cccccccCccceeEEeecCCC---CCc-cCCCC
Q 013521 148 ISR-LQMLL---G----SNVTVAVQDPSFPAYIDTSVIVGQA-----GKFLKETGKYRNIVYMNCRPE---NNF-FPDLS 210 (441)
Q Consensus 148 l~~-l~~l~---~----~gd~Vlv~~p~y~~~~~~~~~~g~~-----~~~~~~~~~~~~v~~v~~~~~---~~~-~~~~~ 210 (441)
+++ +..+. + |||.|++.+|+|+++...+...+.. ..+.... ..+..++.+.. +.+ ..|++
T Consensus 116 ~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~ 192 (429)
T 1s0a_A 116 VEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYL---PENLFAPAPQSRMDGEWDERDMV 192 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTS---CCCEEECCCCSBC-CCCCGGGGH
T ss_pred HHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCC---CCceEeCCCcccccccchHHHHH
Confidence 997 43322 2 6999999999999865433322110 0000000 13444544311 111 12221
Q ss_pred ---C--C---CCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeE
Q 013521 211 ---T--T---SRTDIIFFCSP--NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAI 279 (441)
Q Consensus 211 ---~--~---~~~~~v~i~~p--~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i 279 (441)
+ . +++++ ++++| |||||. ..+.+++++|+++|++||+++|+||+|.+|...+....+....-.++
T Consensus 193 ~l~~~l~~~~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d--- 268 (429)
T 1s0a_A 193 GFARLMAAHRHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD--- 268 (429)
T ss_dssp HHHHHHHHHTTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS---
T ss_pred HHHHHHHhCCCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCC---
Confidence 1 1 34545 55666 699996 55788999999999999999999999998755432222222221222
Q ss_pred EEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH-----HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013521 280 EISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI-----VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDY 353 (441)
Q Consensus 280 ~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 353 (441)
+.||||.++ +| +|+||+++++++ ++.+... ......+.+++++.++.++++... + +...++
T Consensus 269 -~~t~sK~l~-~G~~~iG~~~~~~~~--------~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~-~--~~~~~~ 335 (429)
T 1s0a_A 269 -ILCLGKALT-GGTMTLSATLTTREV--------AETISNGEAGCFMHGPTFMGNPLACAAANASLAILE-S--GDWQQQ 335 (429)
T ss_dssp -EEEECGGGG-TSSSCCEEEEECHHH--------HHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH-T--CHHHHH
T ss_pred -EEEeccccc-CCCccceEEEeCHHH--------HHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHH-h--CCHHHH
Confidence 237999998 78 999999998876 3444331 011234468888888888875211 1 234567
Q ss_pred HHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecC
Q 013521 354 YKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGH 426 (441)
Q Consensus 354 ~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~ 426 (441)
++++++++.+.|+++ ++.... ..|+++|++++. .+..++...+++ +||.+.|. .+++||++ ..+
T Consensus 336 ~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~-------~~~iRis~~~~~t 406 (429)
T 1s0a_A 336 VADIEVQLREQLAPARDAEMVADVR-VLGAIGVVETTHPVNMAALQKFFVE-QGVWIRPF-------GKLIYLMPPYIIL 406 (429)
T ss_dssp HHHHHHHHHHHHGGGGGCTTEEEEE-EETTEEEEEESSCBCHHHHHHHHHH-TTEECCCB-------TTEEEECCCTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEE-EeeEEEEEEECCcccHHHHHHHHHH-CCCEEecc-------CCEEEEECCCCCC
Confidence 777888888888764 343333 256789999874 356677777775 59999883 26899994 568
Q ss_pred HHHHHHHHHHHHhhC
Q 013521 427 REYISEACRRLKNFL 441 (441)
Q Consensus 427 ~~~~~~~l~~l~~~l 441 (441)
++++++++++|++++
T Consensus 407 ~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 407 PQQLQRLTAAVNRAV 421 (429)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=251.02 Aligned_cols=344 Identities=11% Similarity=0.053 Sum_probs=218.1
Q ss_pred CCCeEEeCCCC---CCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD---TTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~---~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|. +-...++.+.+++.+.+.+... . ...+..+.++++++++.+.++.+.+ |++|+|++++
T Consensus 48 g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~---~----~~~~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA 119 (452)
T 3n5m_A 48 GKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY---F----PMSQSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEA 119 (452)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC---C----CTTSEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC---c----ccccCCHHHHHHHHHHHHhCCCCce-EEEeCchHHH
Confidence 46789998872 3223679999999998875321 1 1223445555666665543455555 9999999999
Q ss_pred HHH-HHHhc-----C---CCCEEEEeCCCchhhHhHHHHhccccccccc-cCccceeEEeecCCCCC--cc---------
Q 013521 148 ISR-LQMLL-----G---SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE-TGKYRNIVYMNCRPENN--FF--------- 206 (441)
Q Consensus 148 l~~-l~~l~-----~---~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~v~~v~~~~~~~--~~--------- 206 (441)
+.. +..+. . ++|.|++.+|+|+++.......+........ ......+..++...... +.
T Consensus 120 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (452)
T 3n5m_A 120 NETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVE 199 (452)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHH
Confidence 997 54444 4 7899999999999987666555432211000 00001234444311100 00
Q ss_pred --CCCCC--C----CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 207 --PDLST--T----SRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 207 --~~~~~--~----~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
.++++ . +++++|+++.+ || ||.++ +++++++|.++|++||+++|+||+|.+|...+.........-.++
T Consensus 200 ~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~d 278 (452)
T 3n5m_A 200 CVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPD 278 (452)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCC
Confidence 11111 1 35666666666 89 99776 888899999999999999999999998765543222222221222
Q ss_pred eeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH------HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHH
Q 013521 277 VAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR------IVCTCFNGASNIVQAGGLACLSPDGFQALRT 349 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 349 (441)
+.||||.++ .| +|+||++++++++ +.+.. +......+.+++++.++.++++.... +.
T Consensus 279 ----i~t~sK~l~-~G~~~ig~~~~~~~i~--------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~ 342 (452)
T 3n5m_A 279 ----IITMAKGIT-SAYLPLSATAVKREIY--------EAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN---EN 342 (452)
T ss_dssp ----EEEECGGGG-TTSSCCEEEEEEHHHH--------GGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH---TT
T ss_pred ----EEeeccccc-CCCcceEEEEECHHHH--------HHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh---cc
Confidence 347999998 59 9999999998873 33311 11223445788999998888862111 22
Q ss_pred HHHHHHHHHHHHHHHHH----hCC-CeeeCCCCceEEEEEcCC--CC--------hHHHHHHHHHhcCeEEeCCCCcCCC
Q 013521 350 VIDYYKENAKIIVDAFQ----SLG-LKVNGGKNAPYVWVQFPG--SS--------SWDVFAEILEKTHILTIPGSGFGPG 414 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~----~~g-~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~ll~~~gi~v~pg~~f~~~ 414 (441)
+.++++++.+.+.+.|. +++ +.... ..|.++++.+.. .. ..++...+++ +||.+.|+..|.+.
T Consensus 343 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~ 420 (452)
T 3n5m_A 343 LIERSAQMGSLLLEQLKEEIGEHPLVGDIR-GKGLLVGIELVNDKETKEPIDNDKIASVVNACKE-KGLIIGRNGMTTAG 420 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEEE-ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHH-TTEECEECTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHH-CCcEEeecCcccCC
Confidence 34444444455544444 332 33333 467777887731 11 1356666665 59999999888766
Q ss_pred CCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 415 GNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 415 ~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+++|||+ +..+++++++++++|++++
T Consensus 421 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 449 (452)
T 3n5m_A 421 YNNILTLAPPLVISSEEIAFVIGTLKTAM 449 (452)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 68999997 4569999999999998763
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-29 Score=247.65 Aligned_cols=346 Identities=9% Similarity=-0.028 Sum_probs=223.1
Q ss_pred CCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+++++|++.| ..++ ..++.+.+++.+.+.+... .|....+..++++++++++.+..+.+.++|++|+|++++
T Consensus 50 G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA 124 (460)
T 3gju_A 50 GRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAY-----YHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDA 124 (460)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSC-----CCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccc-----cccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHH
Confidence 4578998877 2223 3579999999998876432 232233444566667766665456778899999999999
Q ss_pred HHH-HHHhc--------CCCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCC-----CCCcc------
Q 013521 148 ISR-LQMLL--------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRP-----ENNFF------ 206 (441)
Q Consensus 148 l~~-l~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~-----~~~~~------ 206 (441)
+.. +..+. .+++.|++.+|+|+++...+...+....+.. .......+..++... +.+..
T Consensus 125 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 204 (460)
T 3gju_A 125 NETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQ 204 (460)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHH
Confidence 997 54444 2569999999999998766655543211000 000001344444321 00111
Q ss_pred ---CCCCC-----C-CCccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 207 ---PDLST-----T-SRTDIIFFCSPNNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 207 ---~~~~~-----~-~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
.++++ . +++++|+++.++|++|. +++++.+++|.++|++||+++|+||+|..|...+.........-.++
T Consensus 205 ~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pd 284 (460)
T 3gju_A 205 HCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPD 284 (460)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCC
Confidence 11221 1 34555554444777776 77899999999999999999999999998765543222222222233
Q ss_pred eeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH-------HhhhcCCCcHHHHHHHHHhcCCCc-HHHH
Q 013521 277 VAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI-------VCTCFNGASNIVQAGGLACLSPDG-FQAL 347 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~-~~~~ 347 (441)
+.+|||.++ +| +|+||++++++++ +.+... ......+.+++++.++.++++... ...+
T Consensus 285 ----i~t~sK~l~-gG~~~lg~v~~~~~i~--------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 351 (460)
T 3gju_A 285 ----LITIAKGLT-SAYAPLSGVIVADRVW--------QVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLV 351 (460)
T ss_dssp ----EEEECGGGT-TTSSCCEEEEEEHHHH--------HHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred ----eeeeehhhc-CCCCCeEEEEECHHHH--------HHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence 347899997 67 8999999998873 444321 222344578899999998887211 1334
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCceEEEEEcCCCC------------hHHHHHHHHHhcCeEEeCCCCcCCC
Q 013521 348 RTVIDYYKENAKIIVDAFQSLG-LKVNGGKNAPYVWVQFPGSS------------SWDVFAEILEKTHILTIPGSGFGPG 414 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ll~~~gi~v~pg~~f~~~ 414 (441)
++.++..+..++.+.+.+++++ +.... ..|.++++++.... ..++...++++ ||.+.|+.
T Consensus 352 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----- 424 (460)
T 3gju_A 352 TNAGETGAYFRAELAKAVGGHKNVGEVR-GDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAAS-GVIGRAMP----- 424 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTEEEEE-EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEECS-----
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEe-eeeEEEEEEEccCccccccccchHHHHHHHHHHHHHC-CeEEecCC-----
Confidence 5666666666666666666663 33333 35778888875211 33556666655 99999865
Q ss_pred CCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 415 GNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 415 ~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
..+++||+ +..+++++++++++|++++
T Consensus 425 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 453 (460)
T 3gju_A 425 QGDILGFAPPLCLTREQADIVVSKTADAV 453 (460)
T ss_dssp SSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35799999 5669999999999998763
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=249.05 Aligned_cols=342 Identities=13% Similarity=0.083 Sum_probs=216.1
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG-DEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~ 146 (441)
++.++|++.+.+ ++. .++.+.+++.+.+.+. .+|+...+..++++++++++.+.++... ++|++|+|+++
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggse 115 (439)
T 3dxv_A 42 GRELIDLSGAWGAASLGYGHPAIVAAVSAAAANP------AGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSD 115 (439)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC------SCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhc------cCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHH
Confidence 457899998876 333 7899999999988753 2344445667778888888776555555 79999999999
Q ss_pred HHHH-HHHh--cCCCCEEEEeCCCchhhHhHHHHhccccc--cccc-cCccceeEEeecCCCCCc------cCCCC----
Q 013521 147 DISR-LQML--LGSNVTVAVQDPSFPAYIDTSVIVGQAGK--FLKE-TGKYRNIVYMNCRPENNF------FPDLS---- 210 (441)
Q Consensus 147 al~~-l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~--~~~~-~~~~~~v~~v~~~~~~~~------~~~~~---- 210 (441)
++.. +..+ +.+++.|++.+|+|++....+...+.... +... ......+..++.+..... ..+++
T Consensus 116 a~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 195 (439)
T 3dxv_A 116 ANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLA 195 (439)
T ss_dssp HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHH
Confidence 9997 4433 34667899999999887655544432110 0000 000001223333211000 01111
Q ss_pred -C-CCCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcc
Q 013521 211 -T-TSRTDIIFFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKF 287 (441)
Q Consensus 211 -~-~~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 287 (441)
. .+++++|+++.++|++|.+. +++.+++|.++|++||+++|+||+|.+|...+.+.........++ +.||||.
T Consensus 196 ~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~d----i~s~sK~ 271 (439)
T 3dxv_A 196 AVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPD----ILVLGKG 271 (439)
T ss_dssp TSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCS----EEEECGG
T ss_pred hcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCC----EEEEcch
Confidence 1 24567777766688888765 555699999999999999999999997655443222222221233 2289999
Q ss_pred cCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 013521 288 AGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 288 ~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 367 (441)
++ +|+|+||++++++++ +.+......... .+++++.++.++++.... +.+.++++++++.+.+.|.+
T Consensus 272 ~~-~G~riG~~~~~~~~~--------~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~ 338 (439)
T 3dxv_A 272 LG-GGLPLSAVIAPAEIL--------DCASAFAMQTLH-GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGLSE 338 (439)
T ss_dssp GG-TTSCCEEEEEEHHHH--------TSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHH
T ss_pred hc-CCcceEEEEECHHHH--------hhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHH
Confidence 98 799999999998774 222222222334 688888888888762111 23344455555555555543
Q ss_pred ----CC-CeeeCCCCceEEEEEcC--------C-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHH
Q 013521 368 ----LG-LKVNGGKNAPYVWVQFP--------G-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYIS 431 (441)
Q Consensus 368 ----~g-~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~ 431 (441)
++ +...+ ..|.|+|+++. . ....++...++++ ||.+.|+.. ..+++||++ ..++++++
T Consensus 339 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~~iRi~~~~~~t~e~i~ 412 (439)
T 3dxv_A 339 LAKRHPLIGDIR-GRGLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGM----NGNVLEFTPPLTITETDIH 412 (439)
T ss_dssp HHHHCTTEEEEE-EETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEEST----TSCEEEECCCTTCCHHHHH
T ss_pred HHHhCCCeEEEE-EEEEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCC----CCCEEEEECCCCCCHHHHH
Confidence 33 33333 46788888772 1 1234566777765 999999753 247999975 55899999
Q ss_pred HHHHHHHhhC
Q 013521 432 EACRRLKNFL 441 (441)
Q Consensus 432 ~~l~~l~~~l 441 (441)
+++++|++++
T Consensus 413 ~~l~~l~~~l 422 (439)
T 3dxv_A 413 KALDLLDRAF 422 (439)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=243.02 Aligned_cols=326 Identities=13% Similarity=0.109 Sum_probs=208.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC---CcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCc-HHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA---EQGNMALRTAIADKFYKDMGIE-GDEIFISDGA-QSD 147 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~-~~a 147 (441)
.++++..|.+ ++|+.+.+++.+.+.+..+ .+...|.. ..+..++.+++.+++.+.++++ +++|++|+|+ +++
T Consensus 3 ~~~~~~~g~~--~~p~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~a 79 (360)
T 1w23_A 3 QVFNFNAGPS--ALPKPALERAQKELLNFND-TQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQ 79 (360)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSSTT-SSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHH
T ss_pred ceEeecCCCc--CCCHHHHHHHHHHhhhhcc-ccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHH
Confidence 3677877754 6789999999998754311 11111211 2333333444444443333665 5799999999 999
Q ss_pred HHH-HHHhcCC---CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCC-cc-CCCCC---CCCccEE
Q 013521 148 ISR-LQMLLGS---NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENN-FF-PDLST---TSRTDII 218 (441)
Q Consensus 148 l~~-l~~l~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~-~~-~~~~~---~~~~~~v 218 (441)
+.+ +..++.+ ||.|+++.++|... ..+...| +++.++++++++ .+ .++++ .+++++|
T Consensus 80 l~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~g-------------~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v 145 (360)
T 1w23_A 80 FTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLLG-------------ETHIAASTKANSYQSIPDFSEFQLNENDAYL 145 (360)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTTS-------------EEEEEEECGGGTSCSCCCGGGCCCCTTEEEE
T ss_pred HHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHhC-------------CeEEeecccccCcCCccchHhhccCCCCCEE
Confidence 997 5677754 56677777676553 2334444 456666654222 22 22322 3679999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++++|+||||.+++ ++. ++||+++|+|++|+.+.. +.++..+ .+++.|+||.+|++| +||+
T Consensus 146 ~~~~~~nptG~~~~--~i~------~~~~~~li~D~a~~~~~~---~~~~~~~------di~~~s~sK~~~~~G--~G~~ 206 (360)
T 1w23_A 146 HITSNNTIYGTQYQ--NFP------EINHAPLIADMSSDILSR---PLKVNQF------GMIYAGAQKNLGPSG--VTVV 206 (360)
T ss_dssp EEESEETTTTEECS--SCC------CCCSSCEEEECTTTTTSS---CCCGGGC------SEEEEETTTTTSCTT--CEEE
T ss_pred EEeCCCCCcceecc--ccc------ccCCceEEEechhhcCCC---CcCcccC------CEEEEEcccccCCCC--cEEE
Confidence 99999999999988 232 279999999999986432 2233222 388999999998666 9999
Q ss_pred EeeccccccCCch---hHHHHHHH--HhhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhCC-C-
Q 013521 299 VVPEELRYSNGYP---VIKDFNRI--VCTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSLG-L- 370 (441)
Q Consensus 299 ~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~- 370 (441)
+++++++..-... ... +... ......+.+...+.++.++++..... ++++++++++++++.+.+.|++++ +
T Consensus 207 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 285 (360)
T 1w23_A 207 IVKKDLLNTKVEQVPTMLQ-YATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFY 285 (360)
T ss_dssp EEEHHHHCSCCTTCCGGGC-HHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSS
T ss_pred EEcHHHHhhcccCCcchhh-hhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 9998875221100 000 0000 11222345566666555555421111 468889999999999999999875 5
Q ss_pred eee-CC--CCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 371 KVN-GG--KNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 371 ~~~-~~--~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
... .+ ..++++|+++++. +..++.+.+ +++||.+.||..| +++|||++. .+++++++++++|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~----~~~iRis~~~~~~~~~i~~~~~~l~~~ 356 (360)
T 1w23_A 286 VGHAEKGSRSLMNVTFNLRNEELNQQFLAKA-KEQGFVGLNGHRS----VGGCRASIYNAVPIDACIALRELMIQF 356 (360)
T ss_dssp EESSCGGGBCSSEEEEECSSHHHHHHHHHHH-HHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccCCchhccCcEEEEEcCCCccHHHHHHHH-HHCCeeeecCCCC----CCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 543 12 2355999999742 234566664 4569999998754 578999985 4889999999999875
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=235.99 Aligned_cols=310 Identities=17% Similarity=0.175 Sum_probs=218.5
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC-CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHh
Q 013521 76 RLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA-EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQML 154 (441)
Q Consensus 76 ~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l 154 (441)
+|+.|+|+++.|+.+.+++.+.+.. . .|++ ..+..++|+++++++ +. ++|++|+|+++++.++...
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~----~---~y~~~~~~~~~l~~~la~~~----~~--~~v~~~~ggt~al~~~l~~ 86 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDS----Q---WLSNGGPLVREFEERVAGLA----GV--RHAVATCNATAGLQLLAHA 86 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHH----T---CCSSSCHHHHHHHHHHHHHH----TS--SEEEEESCHHHHHHHHHHH
T ss_pred cccccCCCCCChHHHHHHHHHHHhc----C---CcccCCHHHHHHHHHHHHHh----CC--CeEEEeCCHHHHHHHHHHH
Confidence 6899999998899999999998864 1 3766 678999999999997 43 5999999999999985444
Q ss_pred cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEcCCCCcccc
Q 013521 155 LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 155 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~~p~NPtG~ 229 (441)
+.+||+|++++|+|+++...+...| .+++.++++++ ++..|++ + .+++++|+++ ||||.
T Consensus 87 l~~gd~Vlv~~~~~~~~~~~~~~~G------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~~~---~~tG~ 150 (424)
T 2po3_A 87 AGLTGEVIMPSMTFAATPHALRWIG------------LTPVFADIDPD-TGNLDPDQVAAAVTPRTSAVVGV---HLWGR 150 (424)
T ss_dssp HTCCSEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TSSBCHHHHGGGCCTTEEEEEEE---CGGGC
T ss_pred cCCCCEEEECCCccHHHHHHHHHcC------------CEEEEEecCCC-cCCcCHHHHHHhhCcCCcEEEEE---CCCCC
Confidence 4589999999999999999988888 58899998753 3333322 2 3578888885 48999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee-cccccc
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP-EELRYS 307 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~-~~~~~~ 307 (441)
..+ +++|+++|++||++||+|++|+. +.+++ .++..+ .+ +++.||||..+++|+|+||++++ +++
T Consensus 151 ~~~---l~~i~~la~~~~~~li~Dea~~~g~~~~~--~~~~~~---~d--i~~~S~sk~K~l~~~~~G~~v~~~~~l--- 217 (424)
T 2po3_A 151 PCA---ADQLRKVADEHGLRLYFDAAHALGCAVDG--RPAGSL---GD--AEVFSFHATKAVNAFEGGAVVTDDADL--- 217 (424)
T ss_dssp CCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT--EETTSS---SS--EEEEECCTTSSSCCSSCEEEEESCHHH---
T ss_pred cCC---HHHHHHHHHHcCCEEEEECccccCCeECC--eecccc---cC--EEEEeCCCCCCccCCCCeEEEeCCHHH---
Confidence 866 88999999999999999999994 55543 222222 23 89999995555567899999998 455
Q ss_pred CCchhHHHHHHHHhhhcC------------CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC
Q 013521 308 NGYPVIKDFNRIVCTCFN------------GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNG 374 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 374 (441)
.+.+......... ..+.+.. ...+. ..+.++...++.+++++++.+.|+++ |+.+..
T Consensus 218 -----~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~a---a~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 287 (424)
T 2po3_A 218 -----AARIRALHNFGFDLPGGSPAGGTNAKMSEAAA---AMGLT--SLDAFPEVIDRNRRNHAAYREHLADLPGVLVAD 287 (424)
T ss_dssp -----HHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECC
T ss_pred -----HHHHHHHHhcCccccccccccCcCCCcCHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Confidence 3445443332110 1122222 22221 12445667777788888888999887 787765
Q ss_pred -CCCc----eEEEEEcC----CCChHHHHHHHHHhcCeEEeCCCCcCCC--------------C-------CCeEEEEe-
Q 013521 375 -GKNA----PYVWVQFP----GSSSWDVFAEILEKTHILTIPGSGFGPG--------------G-------NEHIRVSA- 423 (441)
Q Consensus 375 -~~~~----~~~~~~~~----~~~~~~~~~~ll~~~gi~v~pg~~f~~~--------------~-------~~~iRls~- 423 (441)
+.++ .++++.++ +.+..++.+.+ +++||.+.+. |.+. . ...||+++
T Consensus 288 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L-~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~ 364 (424)
T 2po3_A 288 HDRHGLNNHQYVIVEIDEATTGIHRDLVMEVL-KAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTG 364 (424)
T ss_dssp GGGGSCCCCCCEEEEECHHHHSSCHHHHHHHH-HHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCS
T ss_pred CCCCCccccEEEEEEECCccchhhHHHHHHHH-HHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhcCEEEeeCC
Confidence 3232 23447776 34555666655 5569999872 2211 0 12277773
Q ss_pred -ecCHHHHHHHHHHHHhh
Q 013521 424 -FGHREYISEACRRLKNF 440 (441)
Q Consensus 424 -~~~~~~~~~~l~~l~~~ 440 (441)
..+++++++++++|+++
T Consensus 365 ~~~t~e~i~~~~~~L~~~ 382 (424)
T 2po3_A 365 TAIGDDDIRRVADLLRLC 382 (424)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 45899999999999875
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=244.37 Aligned_cols=333 Identities=15% Similarity=0.103 Sum_probs=209.6
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC----cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE----QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~----~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
.+.+.|+.+.++ ++|+.+.+++.+.+..... .....|... ....++|+++|+++ ++++++|++|+|++++
T Consensus 17 ~~~~~Ld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNATT-PLEPEVIQAVTEAMKEAWG-NPSSSYVAGRKAKDIINTARASLAKMI----GGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTCC-CCCHHHHHHHHHHHHHCCS-CTTCSSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCccC-CCCHHHHHHHHHHHHHhcC-CCccCcHHHHHHHHHHHHHHHHHHHHc----CCCcCeEEEeCChHHH
Confidence 357899988876 6788999999998865211 111123111 12468888998886 7788999999999999
Q ss_pred HHH-HHHhc--------CCCCEEEEeCCCchhh-----------------HhHHHHhccccccccccCccceeEEeecCC
Q 013521 148 ISR-LQMLL--------GSNVTVAVQDPSFPAY-----------------IDTSVIVGQAGKFLKETGKYRNIVYMNCRP 201 (441)
Q Consensus 148 l~~-l~~l~--------~~gd~Vlv~~p~y~~~-----------------~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~ 201 (441)
+.+ +..++ ++||+|++++|+|+++ ...++..| .+++.++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g------------~~v~~v~~~~ 158 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQV------------AEVTFVPVSK 158 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTS------------CEEEEECCCT
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcC------------cEEEEEecCc
Confidence 997 45554 5899999999999865 22223345 4888898875
Q ss_pred CCCccCCCC---C--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC----------cEEEEcccccccccCCCCC
Q 013521 202 ENNFFPDLS---T--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANG----------SIIVYDSAYAAYITDPSPR 266 (441)
Q Consensus 202 ~~~~~~~~~---~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~----------~~ii~De~~~~~~~~~~~~ 266 (441)
+++ ..+++ + .+++++|++++|+||||.+++ +++|.++|++++ +++|+|++|+.+. .+.
T Consensus 159 ~~~-~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~---~~~ 231 (432)
T 3a9z_A 159 VNG-QVEVEDILAAVRPTTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK---RRV 231 (432)
T ss_dssp TTS-SCCHHHHHHTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT---SCC
T ss_pred ccC-CcCHHHHHHhccCCceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC---ccc
Confidence 222 22322 1 357899999999999999999 567889999999 9999999998532 133
Q ss_pred cccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHH
Q 013521 267 SIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA 346 (441)
Q Consensus 267 ~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 346 (441)
++.... . .+++.|+||++| +|+||++++++......................+.+.+.+.++.++++. ..++
T Consensus 232 ~~~~~~--~--d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~-~~~~ 303 (432)
T 3a9z_A 232 DVEDLG--V--DFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADL-VSEN 303 (432)
T ss_dssp CHHHHC--C--SEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHH-HHHH
T ss_pred ChhhcC--C--CEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHH-HHhh
Confidence 333331 2 267899999875 4699999987651100000000000001122234566777666666642 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCeee--CC-----CCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCC--
Q 013521 347 LRTVIDYYKENAKIIVDAFQSL-GLKVN--GG-----KNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPG-- 414 (441)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~-----~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~-- 414 (441)
+++.+++++++++++.+.|+++ |+.+. .+ ..+..+++.+++ .+..++...+ .++.+.+|..|.+.
T Consensus 304 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~G~~~~~~~~ 380 (432)
T 3a9z_A 304 CETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC---QTLLASVGASCHSDHE 380 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC---SSEECBSSCGGGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh---cCeEEeccccccCCCC
Confidence 7888999999999999999885 65442 22 123456667663 2344444432 37888888765331
Q ss_pred ----------------CCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 415 ----------------GNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 415 ----------------~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
..++|||++.. +++++++++++|+++
T Consensus 381 ~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~ 424 (432)
T 3a9z_A 381 DRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQA 424 (432)
T ss_dssp TSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 13799999854 799999999999875
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=244.12 Aligned_cols=343 Identities=12% Similarity=0.093 Sum_probs=218.0
Q ss_pred CCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcHH
Q 013521 71 DARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~~ 146 (441)
++.++|+..| ...+ ..++.+.+++.+.+.+.. +|....+..++++++++++.+.++.+ +++|++|+|+++
T Consensus 63 G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~------~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGse 136 (453)
T 4ffc_A 63 GNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFT------HTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAE 136 (453)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS------CCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHH
T ss_pred CCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhcc------ccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHH
Confidence 4578999877 3333 358999999999987632 23333345566666666666544543 589999999999
Q ss_pred HHHH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhcccc-----ccccccCccceeEEeecCCC--C--Ccc--------
Q 013521 147 DISR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAG-----KFLKETGKYRNIVYMNCRPE--N--NFF-------- 206 (441)
Q Consensus 147 al~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~-----~~~~~~~~~~~v~~v~~~~~--~--~~~-------- 206 (441)
|+.. +.... ..++.|++.+++|+++...+..++... .+.... ..+..++.... + +..
T Consensus 137 A~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ 213 (453)
T 4ffc_A 137 AVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFA---PEVYRMPASYPLRDEPGLTGEEAARRA 213 (453)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCC---SSEEEECCCCTTTSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCC---CCcEEeCCCccccCccccchHHHHHHH
Confidence 9997 43332 356899999999999876666554321 111000 13445554311 1 110
Q ss_pred -CCCCC--CCCccEEEEcCCCCccc--cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEE
Q 013521 207 -PDLST--TSRTDIIFFCSPNNPTG--HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEI 281 (441)
Q Consensus 207 -~~~~~--~~~~~~v~i~~p~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i 281 (441)
..+++ .++..++++++|.||+| ...+++.+++|.++|++||+++|+||+|.+|...+.........-.++ +
T Consensus 214 ~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pd----i 289 (453)
T 4ffc_A 214 ISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPD----I 289 (453)
T ss_dssp HHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----E
T ss_pred HHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcc----h
Confidence 00111 23456677789988777 555888999999999999999999999998765543222222221222 5
Q ss_pred ecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKI 360 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~ 360 (441)
.||||.++ +|+|+||++++++++ +.+.........+.++++|.++.++++.... ..+++.++..+..++.
T Consensus 290 ~t~sK~~~-~G~~~G~~~~~~~i~--------~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~ 360 (453)
T 4ffc_A 290 VTMAKGIA-GGMPLSAVTGRAELM--------DAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSR 360 (453)
T ss_dssp EEECGGGG-TTSSCEEEEEEHHHH--------TTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhc-CCcCeEEEEECHHHH--------hhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 57999998 699999999998874 2233223334556789999999888862111 1223333333333344
Q ss_pred HHHHHHhCC-CeeeCCCCceEEEEEcCC--------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHH
Q 013521 361 IVDAFQSLG-LKVNGGKNAPYVWVQFPG--------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREY 429 (441)
Q Consensus 361 l~~~L~~~g-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~ 429 (441)
+.+.+++++ +.... ..|.++|+++.. ....++...+++ +||.+.|+..| .+++||++ ..++++
T Consensus 361 l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~~~~~~t~e~ 434 (453)
T 4ffc_A 361 LSALAEEVDIIGEVR-GRGAMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTF----GNVIRLLPPLVIGDDL 434 (453)
T ss_dssp HHHHHHHCSSEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTT----SCEEEECCCTTCCHHH
T ss_pred HHHHHhhCCCeEEEE-eeceEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEEEECCCCCCHHH
Confidence 444444443 33333 357889988732 013455566665 59999997654 35899985 458999
Q ss_pred HHHHHHHHHhhC
Q 013521 430 ISEACRRLKNFL 441 (441)
Q Consensus 430 ~~~~l~~l~~~l 441 (441)
+++++++|++++
T Consensus 435 i~~~l~~l~~~l 446 (453)
T 4ffc_A 435 LDEGITALSDII 446 (453)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=243.61 Aligned_cols=345 Identities=8% Similarity=-0.028 Sum_probs=218.3
Q ss_pred CCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|++.| ...+ ..++.+.+++.+.+.+... +|....+..+.++++++++.+.++.+.++|++|+|++++
T Consensus 49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA 123 (459)
T 4a6r_A 49 GNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPF-----YNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSES 123 (459)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSC-----CCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHH
T ss_pred CCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccc-----cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHH
Confidence 4568898877 3333 3578999999999876321 232333455677777777766567788999999999999
Q ss_pred HHH-HHHhcC--------CCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCC--C-CCc-c-------
Q 013521 148 ISR-LQMLLG--------SNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRP--E-NNF-F------- 206 (441)
Q Consensus 148 l~~-l~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~--~-~~~-~------- 206 (441)
+.. +..+.. +++.|++.+|+|+++...+...+....+.. .......+..++... . +.+ +
T Consensus 124 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~ 203 (459)
T 4a6r_A 124 VDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVV 203 (459)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHH
Confidence 997 544443 579999999999998766666553221100 000001333444221 0 000 0
Q ss_pred --CCCCC-----CCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcce
Q 013521 207 --PDLST-----TSRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV 277 (441)
Q Consensus 207 --~~~~~-----~~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
.++++ .++..++++++| +|++|. ++|++++++|.++|++||+++|+||+|.+|...+.........-.++
T Consensus 204 ~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pd- 282 (459)
T 4a6r_A 204 AARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPD- 282 (459)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS-
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCC-
Confidence 11111 113334555666 555555 55999999999999999999999999998765543222222322233
Q ss_pred eEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHH---HHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHH-H
Q 013521 278 AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFN---RIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVI-D 352 (441)
Q Consensus 278 ~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~-~ 352 (441)
+.+|||.++.+|+|+||+++++++ ++.+. .......++.+++++.++.++++.... ..+++.+ +
T Consensus 283 ---i~t~sK~l~gg~~~lg~v~~~~~i--------~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~ 351 (459)
T 4a6r_A 283 ---LFTAAKGLSSGYLPIGAVFVGKRV--------AEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDD 351 (459)
T ss_dssp ---EEEECGGGGTTSSCCEEEEECHHH--------HHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHT
T ss_pred ---eeehhhhhcCCCCCccceeeCHHH--------HHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 336899997444999999999887 34454 223333445789999999988862111 2234444 3
Q ss_pred HHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcCCCC------------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeE
Q 013521 353 YYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGSS------------SWDVFAEILEKTHILTIPGSGFGPGGNEHI 419 (441)
Q Consensus 353 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~i 419 (441)
..+..++.+.+.|.++ .+.... ..|.|+++++.... ..++...++++ ||.+.|+. +++
T Consensus 352 ~~~~~~~~l~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g-------~~i 422 (459)
T 4a6r_A 352 IGPYMQKRWRETFSRFEHVDDVR-GVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN-NLIMRACG-------DHI 422 (459)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEE-EETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT-TEECEEET-------TEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEE-EEEEEEEEEEecCccccccccchHHHHHHHHHHHHHC-CeEEecCC-------CEE
Confidence 3334444444455544 333443 35778888875211 34566666655 99999862 689
Q ss_pred EEE--eecCHHHHHHHHHHHHhhC
Q 013521 420 RVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 420 Rls--~~~~~~~~~~~l~~l~~~l 441 (441)
||+ +..+++++++++++|++++
T Consensus 423 Ri~~~~~~t~e~i~~~l~~l~~~l 446 (459)
T 4a6r_A 423 VSAPPLVMTRAEVDEMLAVAERCL 446 (459)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 999 4669999999999998763
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=240.98 Aligned_cols=321 Identities=8% Similarity=-0.013 Sum_probs=230.3
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC--CCcEEEcCCcHHHHHH-HHHhcC-----
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISR-LQMLLG----- 156 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~I~~t~G~~~al~~-l~~l~~----- 156 (441)
..++.+.+++.+++..+.. ....+|....|..++++++++++.+.++.+ ++++++|+|+++++.+ +..+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCV-ANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSS-CBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhh-cCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 3457888888888876543 234456666788999999999998867766 7899999999999987 555543
Q ss_pred CC---CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC-CCCccCC-CCC--CCCccEEEEcCCCCcccc
Q 013521 157 SN---VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP-ENNFFPD-LST--TSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 157 ~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~ 229 (441)
+| |+|+++.|+|+++...+..+| .+++.+++++ +..++++ +++ .+++++|++++|+||||.
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~~G------------~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~ 221 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYYFG------------MKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGI 221 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHHSC------------CEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCC
T ss_pred CCCCCceEEEeCCccHHHHHHHHHcC------------CeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCc
Confidence 46 899999999999999999998 5899999876 2222222 222 357899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccC-----CCC-CcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-----PSP-RSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~-----~~~-~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
+.+ +++|.++|++||+++|+|++|+.+... +.+ .+-.... ..+.++++.|++|.++ +|.++||++++++
T Consensus 222 ~~~---l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~-~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~ 296 (497)
T 3mc6_A 222 ADD---IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFR-VPGVTSISCDTHKYGF-APKGSSVIMYRNS 296 (497)
T ss_dssp CCS---CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTT-STTCCEEEEETTTTTC-CCSSCEEEECSSH
T ss_pred CCC---HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcccccc-CCCCcEEEECchhhcC-CCCCceeEEecCH
Confidence 988 778999999999999999999854321 100 1011111 2344688999999875 8889999999876
Q ss_pred ccccCCchhHHHHHHHHhhhcC-----C------Cc---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFN-----G------AS---NIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL- 368 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~-----~------~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 368 (441)
.+.. ........+. . .+ ..++.+++..+. ...++++.++..++++++.+.|++.
T Consensus 297 ~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~---~~~~~~~~~~~~~~~~~l~~~L~~~~ 365 (497)
T 3mc6_A 297 DLRM--------HQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG---ENGYIESCQEIVGAAMKFKKYIQENI 365 (497)
T ss_dssp HHHT--------TTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHh--------hhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6421 0000000000 0 00 334555555553 2345778888889999999999994
Q ss_pred -CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-cCHHHHHHHHHHHHhh
Q 013521 369 -GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF-GHREYISEACRRLKNF 440 (441)
Q Consensus 369 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~~~~~~l~~l~~~ 440 (441)
|+++..++.+.++++..++.+..++.+.|.++ ||.+.++.. +..+|+++. .+++++++++++|+++
T Consensus 366 ~g~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~-----~~~~ri~~~~~t~e~i~~~~~~L~~~ 433 (497)
T 3mc6_A 366 PDLDIMGNPRYSVISFSSKTLNIHELSDRLSKK-GWHFNALQK-----PVALHMAFTRLSAHVVDEICDILRTT 433 (497)
T ss_dssp TTCEECSCCCSSEEEEECTTTTHHHHHHHHHTT-TCBCEECCS-----SCCEEEECCTTTTCTHHHHHHHHHHH
T ss_pred CCEEEecCCCeeEEEEeCCCCCHHHHHHHHHhC-CEEEecCCC-----CCeEEEEEeCCCHHHHHHHHHHHHHH
Confidence 88887656777777787765667777777655 999877542 346899874 3788999999999875
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=242.29 Aligned_cols=380 Identities=11% Similarity=0.060 Sum_probs=235.4
Q ss_pred ccchhhhHHhhhhCCCCCccccccccccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHH
Q 013521 16 KATVPFTMDFFLSSRWPVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMA 95 (441)
Q Consensus 16 ~~Tv~~a~~~l~~~g~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~ 95 (441)
++||..|+.+.+.+.+..-+. .|.-.. ...+..+ +. ..-..+++.+.|+.+..+ +.|+.+.+++.
T Consensus 24 ~~~~~~a~~l~~~d~l~~~r~-~f~~~~--~~~~~~~--~~---------~~~~~~~~~iyld~~~~g-~~p~~v~~~i~ 88 (465)
T 3e9k_A 24 PTDERVALHLDEEDKLRHFRE-CFYIPK--IQDLPPV--DL---------SLVNKDENAIYFLGNSLG-LQPKMVKTYLE 88 (465)
T ss_dssp TTSHHHHHHHHHTCTTGGGGG-GEECCB--GGGSTTC--CG---------GGSCTTCBCEECBTTTSC-CEETTHHHHHH
T ss_pred CccHHHHHHhcccCcHHHHHH-hcCCCC--ccccccc--cc---------ccccCCCCeEEecCCccC-CChHHHHHHHH
Confidence 899999988887777733222 222110 1111110 00 001123468889877654 45566666666
Q ss_pred HHHhhccCCCC---CCCCCC-CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCC---EEEEeCCC
Q 013521 96 EHAFALSTVKG---YKGYGA-EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNV---TVAVQDPS 167 (441)
Q Consensus 96 ~~~~~~~~~~~---~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd---~Vlv~~p~ 167 (441)
+.+..+..... ..+|.+ ..-..++++.+|+++ ++++++|++|+|+++++++ +..++++|| +|+++.|+
T Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~ 164 (465)
T 3e9k_A 89 EELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIV----GANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKA 164 (465)
T ss_dssp HHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHH----TCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTC
T ss_pred HHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHc----CCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCc
Confidence 66544331111 112222 123355777777775 8889999999999999998 567776665 49999999
Q ss_pred chhhHh----HHHHhccccccccccCccceeEEeecCCCCCccCCCCC--------CCCccEEEEcCCCCccccCCCHHH
Q 013521 168 FPAYID----TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--------TSRTDIIFFCSPNNPTGHAATWQQ 235 (441)
Q Consensus 168 y~~~~~----~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--------~~~~~~v~i~~p~NPtG~~~~~~~ 235 (441)
|++... .++..|.+.. ...+..++.+.+ +..+++. .+++++|++++||||||.+++
T Consensus 165 ~~s~~~~~~~~~~~~G~~~~-------~~~v~~~~~~~~--~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~--- 232 (465)
T 3e9k_A 165 FPSDHYAIESQLQLHGLNIE-------ESMRMIKPREGE--ETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFN--- 232 (465)
T ss_dssp CHHHHHHHHHHHHHTTCCHH-------HHEEEECCCTTC--SSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCC---
T ss_pred CCchHHHHHHHHHHcCCcce-------eeeEEEecCCCC--CccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeec---
Confidence 998544 4444563110 001233444332 2333221 157899999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchh---
Q 013521 236 LKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPV--- 312 (441)
Q Consensus 236 ~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~--- 312 (441)
+++|.++|++||+++|+|++|+.... +..+... +.++++.|++|.++.+..++|+++++++++..-....
T Consensus 233 l~~i~~la~~~g~~vi~D~a~~~g~~---~~~~~~~----~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~ 305 (465)
T 3e9k_A 233 IPAITKAGQAKGCYVGFDLAHAVGNV---ELYLHDW----GVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGW 305 (465)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCG
T ss_pred HHHHHHHHHHcCCEEEEEhhhhcCCc---CCchhhc----CCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCc
Confidence 78899999999999999999884211 2333222 3458999999999423337899999887742211000
Q ss_pred -----HHHHHH---------HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-----------
Q 013521 313 -----IKDFNR---------IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS----------- 367 (441)
Q Consensus 313 -----~~~~~~---------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----------- 367 (441)
...+.. .......+++.+...+..+++.......+++++++++++++++.+.|++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 385 (465)
T 3e9k_A 306 FGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKK 385 (465)
T ss_dssp GGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred cCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCC
Confidence 000000 0000111345555554455543111122688899999999999999987
Q ss_pred CCCeeeCCC----CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe---ecCHHHHHHHHHHHHhh
Q 013521 368 LGLKVNGGK----NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA---FGHREYISEACRRLKNF 440 (441)
Q Consensus 368 ~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~---~~~~~~~~~~l~~l~~~ 440 (441)
.|+++..+. .|.++|+.++ .+..++.+.|.++ ||.+... .+++||+++ +.+.++++++++.|+++
T Consensus 386 ~g~~~~~p~~~~~~g~~~~~~~~-~~~~~l~~~L~~~-Gi~v~~~------~~~~iRis~~~~~~t~edi~~~~~~l~~~ 457 (465)
T 3e9k_A 386 PVVNIITPSHVEERGCQLTITFS-VPNKDVFQELEKR-GVVCDKR------NPNGIRVAPVPLYNSFHDVYKFTNLLTSI 457 (465)
T ss_dssp -CEEECSCSSGGGBCSCEEEEEC-CTTCCHHHHHHTT-TEECEEE------TTTEEEEBCCTTTCCHHHHHHHHHHHHHH
T ss_pred CCeEEeCCCCHhhcccEEEEEec-CCHHHHHHHHHHC-CEEEecC------CCCEEEEeCcccCCCHHHHHHHHHHHHHH
Confidence 578877654 3788999887 3445677776655 9998732 357999996 34899999999999876
Q ss_pred C
Q 013521 441 L 441 (441)
Q Consensus 441 l 441 (441)
+
T Consensus 458 l 458 (465)
T 3e9k_A 458 L 458 (465)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=232.45 Aligned_cols=317 Identities=15% Similarity=0.090 Sum_probs=209.1
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC--cCcHHHHHHHHHHHhhhCCCC-CCcEEE-cCCcHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE--QGNMALRTAIADKFYKDMGIE-GDEIFI-SDGAQSDI 148 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~-~~~I~~-t~G~~~al 148 (441)
.+++++.|. .++|+.+.+++.+.... .....++.+. ....++|+.++++ ++++ +++|++ |+|+++++
T Consensus 40 ~~~~~~~~~--~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~la~~----~g~~~~~~i~~~t~g~t~al 110 (398)
T 2fyf_A 40 RDGRFGSGP--SKVRLEQLQTLTTTAAA---LFGTSHRQAPVKNLVGRVRSGLAEL----FSLPDGYEVILGNGGATAFW 110 (398)
T ss_dssp SSCBCCSSS--CCCCHHHHHGGGTTTTT---TTTSCTTSHHHHHHHHHHHHHHHHH----TTCCTTCEEEEEETCHHHHH
T ss_pred CCccccCCC--CCCCHHHHHHHhhcCCC---ccCcCcCCHHHHHHHHHHHHHHHHH----hCCCCCceEEEeCCchhHHH
Confidence 456676553 35778888888763111 0111123221 1234556666655 4776 469999 99999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchh-hHhHHHHh--ccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPA-YIDTSVIV--GQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPN 224 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~-~~~~~~~~--g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~ 224 (441)
++ +..++++| .+.+..+.|.. ....+... | .+++.++.+. ++..+.+..+++++|++++|+
T Consensus 111 ~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~--g~~~~~~i~~~~~~v~~~~~~ 175 (398)
T 2fyf_A 111 DAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFV------------GEPIIITSDP--GSAPEPQTDPSVDVIAWAHNE 175 (398)
T ss_dssp HHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTS------------CCCEEEECCT--TCCCCCCCCTTCSEEEEESEE
T ss_pred HHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCC------------CceEEEecCC--CCCCCccccCCCCEEEEeCcC
Confidence 98 67778887 23333333321 12233444 4 3677777762 333333334689999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.+++.+++.++ +|+++|+|++|+.+.. +..+ . +..+++.|+||++|.+| ++||+++++++
T Consensus 176 nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~---~~~~---~---~~di~~~s~sK~~~~~g-g~g~l~~~~~~ 239 (398)
T 2fyf_A 176 TSTGVAVAVRRPEGS------DDALVVIDATSGAGGL---PVDI---A---ETDAYYFAPQKNFASDG-GLWLAIMSPAA 239 (398)
T ss_dssp TTTTEECCCCCCTTC------C-CEEEEECTTTTTTS---CCCG---G---GCSEEEECTTSTTCSCS-SEEEEEECHHH
T ss_pred CCcceecchHHhhhh------cCCeEEEEeccccCCc---ccCc---c---cCcEEEEecCcccCCCC-ceEEEEECHHH
Confidence 999999996666554 8999999999986432 2222 1 23488999999999665 69999999877
Q ss_pred cccCCchhHHHHHHH-----------------H----hhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHH
Q 013521 305 RYSNGYPVIKDFNRI-----------------V----CTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIV 362 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~-----------------~----~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~ 362 (441)
+ +.+... . .....+.+...+.++.++++..... ++++++++++++++.+.
T Consensus 240 ~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~ 311 (398)
T 2fyf_A 240 L--------SRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLY 311 (398)
T ss_dssp H--------HHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred H--------HHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4 222211 0 1223445666666666666421111 16788999999999999
Q ss_pred HHHHhC-CCeeeC--C--CCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHH
Q 013521 363 DAFQSL-GLKVNG--G--KNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEAC 434 (441)
Q Consensus 363 ~~L~~~-g~~~~~--~--~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l 434 (441)
+.|+++ |+++.. + ..++++|++++ +.+..++.+.|.++ ||.+++|. ...+.+++||++. .+++++++++
T Consensus 312 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~--~~~~~~~iRis~~~~~t~e~i~~~~ 388 (398)
T 2fyf_A 312 SWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRAN-GIVDTEPY--RKLGRNQLRVAMFPAVEPDDVSALT 388 (398)
T ss_dssp HHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHT-TCBCCSCC--TTTCSSEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHC-CcEEecCc--ccCCCCEEEEEecCCCCHHHHHHHH
Confidence 999988 888763 3 23448999996 44667787777766 99999873 3334679999985 4899999999
Q ss_pred HHHHhh
Q 013521 435 RRLKNF 440 (441)
Q Consensus 435 ~~l~~~ 440 (441)
++|+++
T Consensus 389 ~~l~~~ 394 (398)
T 2fyf_A 389 ECVDWV 394 (398)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-27 Score=229.16 Aligned_cols=308 Identities=16% Similarity=0.103 Sum_probs=217.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
++|+|+. |. .|+.+.+++.+.+... .|.+..+..++++++|+++ +. +++++|+|+++++.+ +
T Consensus 9 ~~i~~~~--p~--~~~~~~~a~~~~~~~~-------~~~~~~~~~~l~~~la~~~----~~--~~~~~~~~gt~al~~~~ 71 (393)
T 1mdo_A 9 DFLPFSR--PA--MGAEELAAVKTVLDSG-------WITTGPKNQELEAAFCRLT----GN--QYAVAVSSATAGMHIAL 71 (393)
T ss_dssp CCBCSCC--CC--CCHHHHHHHHHHHHHT-------CCSSSHHHHHHHHHHHHHH----CC--SEEEEESCHHHHHHHHH
T ss_pred cccccCC--CC--CCHHHHHHHHHHHhcC-------CcCCChHHHHHHHHHHHHh----CC--CcEEEecChHHHHHHHH
Confidence 3677775 44 4577788998888641 2335678999999999997 43 489999999999998 5
Q ss_pred HHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCC
Q 013521 152 QML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNN 225 (441)
Q Consensus 152 ~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~N 225 (441)
..+ +++||+|+++.|+|+++...+...| .+++.++.+++ ++..+++. .+++++|+++ |
T Consensus 72 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~~---~ 135 (393)
T 1mdo_A 72 MALGIGEGDEVITPSMTWVSTLNMIVLLG------------ANPVMVDVDRD-TLMVTPEHIEAAITPQTKAIIPV---H 135 (393)
T ss_dssp HHTTCCTTCEEEEESSSCHHHHHHHHHTT------------CEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECCB---C
T ss_pred HHcCCCCCCEEEeCCCccHhHHHHHHHCC------------CEEEEEeccCC-cCCCCHHHHHHhcCCCceEEEEe---C
Confidence 667 7999999999999999999988888 58899998754 33333321 2578888875 4
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEccccccc-ccCCCCCcccccCCCcceeEEEecCC--cccCCccceeEEEEee-
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAY-ITDPSPRSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVP- 301 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~- 301 (441)
|||.+.+ +++|.++|+++|+++|+|++|+.. .+.+. + +. . .++++.||| |.+ +|.|+||++++
T Consensus 136 ~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~--~---~~-~--~d~~~~S~~k~K~l--~~~~~g~~~~~~ 202 (393)
T 1mdo_A 136 YAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKGR--H---IG-A--RGTAIFSFHAIKNI--TCAEGGIVVTDN 202 (393)
T ss_dssp GGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTE--E---TT-S--SSEEEEECCTTSSS--CSSSCEEEEESC
T ss_pred CCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeECCe--e---cC-C--CCeEEEeCCCCCcc--ccccceEEEeCC
Confidence 8999987 889999999999999999999963 33321 1 11 1 458999999 666 45599999997
Q ss_pred ccccccCCchhHHHHHHHHhhhc------------------------CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCF------------------------NGASNIVQAGGLACLSPDGFQALRTVIDYYKEN 357 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 357 (441)
+++ .+.+........ ...+.+...++...+ +.+++..++.+++
T Consensus 203 ~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l-----~~~~~~~~~~~~~ 269 (393)
T 1mdo_A 203 PQF--------ADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL-----QKLDALNARRAAI 269 (393)
T ss_dssp HHH--------HHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHH
T ss_pred HHH--------HHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 455 334433222110 112334333333333 2245566666778
Q ss_pred HHHHHHHHHhCCCeeeC-C-----CCceEEEEEcC----CCChHHHHHHHHHhcCeEEeCCCCcC-------------C-
Q 013521 358 AKIIVDAFQSLGLKVNG-G-----KNAPYVWVQFP----GSSSWDVFAEILEKTHILTIPGSGFG-------------P- 413 (441)
Q Consensus 358 ~~~l~~~L~~~g~~~~~-~-----~~~~~~~~~~~----~~~~~~~~~~ll~~~gi~v~pg~~f~-------------~- 413 (441)
++.+.+.|++.++++.. + .+++++|+.++ +.+..++.+.+.+ +||.+.+|..+. .
T Consensus 270 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~ 348 (393)
T 1mdo_A 270 AAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFPTLTL 348 (393)
T ss_dssp HHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHSTTCCC
T ss_pred HHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHh-CCCCcccccCccccChhhhccCCccCC
Confidence 88899999887766542 2 34568999997 4466677777665 599999987441 0
Q ss_pred C-----CCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 414 G-----GNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 414 ~-----~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
. ...++|+++. .+++++++++++|+++
T Consensus 349 ~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 382 (393)
T 1mdo_A 349 PDTEWNSERICSLPLFPDMTESDFDRVITALHQI 382 (393)
T ss_dssp HHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 0 1357999985 4899999999999875
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=239.14 Aligned_cols=334 Identities=9% Similarity=0.041 Sum_probs=221.1
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++||..|.+ ++. .++.+.+++.+.+..... ....| +.....++++.+++++ + .++|++++|+++|
T Consensus 75 g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~sGseA 145 (439)
T 2oat_A 75 GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTL--TSRAF-YNNVLGEYEEYITKLF----N--YHKVLPMNTGVEA 145 (439)
T ss_dssp CCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSC--CCTTS-EESSHHHHHHHHHHHH----T--CSEEEEESSHHHH
T ss_pred CCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCc--ccCcc-CCHHHHHHHHHHHHhc----C--CCEEEEeCCHHHH
Confidence 457899988753 455 889999999998875321 11123 3345677888888875 4 5899999999999
Q ss_pred HHH-HHHhc---------CCC-CEEEEeCCCchhhHh-HHHHhccc---cccccccCccceeEEeecCCCCCccCCCCCC
Q 013521 148 ISR-LQMLL---------GSN-VTVAVQDPSFPAYID-TSVIVGQA---GKFLKETGKYRNIVYMNCRPENNFFPDLSTT 212 (441)
Q Consensus 148 l~~-l~~l~---------~~g-d~Vlv~~p~y~~~~~-~~~~~g~~---~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~ 212 (441)
+.. +..+. .+| |.|++.+|+|++... .....|.. ..+.+.. .+++.++.++-+.+...+. .
T Consensus 146 ~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~---~~v~~~~~~d~~~le~~l~-~ 221 (439)
T 2oat_A 146 GETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFM---PGFDIIPYNDLPALERALQ-D 221 (439)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCC---TTEEEECSSCHHHHHHHTT-S
T ss_pred HHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCC---CCeEEeCCCCHHHHHHHhC-C
Confidence 987 44332 367 899999999988644 33333310 0000000 2455565431111111111 2
Q ss_pred CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
+++++|+ ++| +|+||. .+|.+.+++|.++|++||+++|+||+|.+|...+.........-.+| + .||||.++
T Consensus 222 ~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~D--i--~t~sK~l~- 295 (439)
T 2oat_A 222 PNVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPD--I--VLLGKALS- 295 (439)
T ss_dssp TTEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS--E--EEECGGGG-
T ss_pred CCEEEEE-EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCc--E--EEeccccc-
Confidence 4566655 556 677896 56999999999999999999999999987655443222222221233 2 28999998
Q ss_pred cc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 291 TG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 291 ~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
+| +|+||++++++++ +.+.........+.+++.+.++.++++... + +...++++++++++.+.|++++
T Consensus 296 ~G~~~~G~v~~~~~~~--------~~l~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~l~ 364 (439)
T 2oat_A 296 GGLYPVSAVLCDDDIM--------LTIKPGEHGSTYGGNPLGCRVAIAALEVLE-E--ENLAENADKLGIILRNELMKLP 364 (439)
T ss_dssp TTSSCCEEEEECHHHH--------TTSCTTSSCCSSTTCHHHHHHHHHHHHHHH-H--TTHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCeEEEEECHHHH--------hccCCCCcccCCCcCHHHHHHHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHhc
Confidence 79 9999999998764 222211122334568888888887775211 1 3466788888999999998765
Q ss_pred Cee--eCCCCceEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 370 LKV--NGGKNAPYVWVQFPG---SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 370 ~~~--~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
+.. ..+..|+++|++++. .+..++...+++ +||.+.|+ +++++|+++ ..+++++++++++|++++
T Consensus 365 ~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~-~Gv~v~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 436 (439)
T 2oat_A 365 SDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRD-NGLLAKPT------HGDIIRFAPPLVIKEDELRESIEIINKTI 436 (439)
T ss_dssp TTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHH-TTEECCBS------SSSEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHH-CCeEEecC------CCCEEEEECccCCCHHHHHHHHHHHHHHH
Confidence 432 112367889999874 245677777776 49999884 357899975 468999999999998753
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=240.10 Aligned_cols=333 Identities=10% Similarity=0.067 Sum_probs=208.7
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|. .++. .++.+.+++.+.+.+... ....| +.....++++.+++++ + .++|++|+|+++|
T Consensus 64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~sGseA 134 (433)
T 1z7d_A 64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI--CSRAF-FSVPLGICERYLTNLL----G--YDKVLMMNTGAEA 134 (433)
T ss_dssp CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC--CCTTS-EEHHHHHHHHHHHHHH----T--CSEEEEESSHHHH
T ss_pred CCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCC--ccCCc-CCHHHHHHHHHHHhhc----C--CCeEEEeCCHHHH
Confidence 45788988763 4555 789999999998875321 11123 3334566677777664 4 5899999999999
Q ss_pred HHH-HHHhc---------CCC-CEEEEeCCCchhhHhH-HHHhccccc---cccccCccceeEEeecCCCCCccCCCCCC
Q 013521 148 ISR-LQMLL---------GSN-VTVAVQDPSFPAYIDT-SVIVGQAGK---FLKETGKYRNIVYMNCRPENNFFPDLSTT 212 (441)
Q Consensus 148 l~~-l~~l~---------~~g-d~Vlv~~p~y~~~~~~-~~~~g~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~ 212 (441)
+.. +..+. .+| |.|++.+|+|++.... ....|.... +.+. ..++..++.++-+.+...+. .
T Consensus 135 ~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~---~~~v~~~~~~d~~~le~~l~-~ 210 (433)
T 1z7d_A 135 NETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPF---APQFSKVPYDDLEALEEELK-D 210 (433)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-----------------------------CEEEECTTCHHHHHHHHT-S
T ss_pred HHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCC---CCCeEEeCCCCHHHHHHHhC-C
Confidence 987 43321 467 9999999999886443 333231000 0000 01445555421111100011 2
Q ss_pred CCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
+++++|+ ++| +|+||.+ +|.+.+++|.++|++||+++|+||+|..|...+.........-.+| + .||||.+|
T Consensus 211 ~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~d--i--~t~sK~l~- 284 (433)
T 1z7d_A 211 PNVCAFI-VEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPD--V--ILLGKALS- 284 (433)
T ss_dssp TTEEEEE-ECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS--E--EEECGGGG-
T ss_pred CCEEEEE-EECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCC--E--EEECcccc-
Confidence 4666655 455 6779975 7889999999999999999999999987655443222222221233 2 38999998
Q ss_pred cc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 013521 291 TG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL- 368 (441)
Q Consensus 291 ~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 368 (441)
+| +|+||++++++++ +.+.........+.+++++.++.++++... + +.+.++++++++++.+.|+++
T Consensus 285 ~G~~~~G~v~~~~~~~--------~~l~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~l~ 353 (433)
T 1z7d_A 285 GGHYPISAVLANDDIM--------LVIKPGEHGSTYGGNPLAASICVEALNVLI-N--EKLCENAEKLGGPFLENLKREL 353 (433)
T ss_dssp TTSSCCEEEEECHHHH--------TTCCTTCCCCTTTTCHHHHHHHHHHHHHHH-H--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECHHHH--------hhhccccccccCCCCHHHHHHHHHHHHHHH-h--ccHHHHHHHHHHHHHHHHHHHH
Confidence 89 9999999998764 222211122334568888888887775211 1 245667777788888877764
Q ss_pred -CCee--eCCCCceEEEEEcCCC--ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 369 -GLKV--NGGKNAPYVWVQFPGS--SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 369 -g~~~--~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
++.. ..+..|+++|++++.. +..++...+++ +||.+.|+ +.+++|+++ ..+++++++++++|+++
T Consensus 354 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~-~Gv~v~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~ 425 (433)
T 1z7d_A 354 KDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKE-NGLITRDV------HDKTIRLTPPLCITKEQLDECTEIIVKT 425 (433)
T ss_dssp TTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHH-TTEECCEE------TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHH-CCeEEecC------CCCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 3321 1123678899999742 45677777776 59999885 357899975 45899999999999875
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=240.99 Aligned_cols=340 Identities=11% Similarity=0.059 Sum_probs=216.5
Q ss_pred CCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcHH
Q 013521 71 DARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~~ 146 (441)
++.++|+..| ...+ ..++.+.+++.+.+.+. .+|....+..+++.++++++.+..+.. +++|++|+|+++
T Consensus 60 g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~------~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGse 133 (451)
T 3oks_A 60 GNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF------THTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSE 133 (451)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC------SCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHH
T ss_pred CCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc------ccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHH
Confidence 4568998877 3333 35899999999988643 234333455667777777776544443 579999999999
Q ss_pred HHHH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhcccc-----ccccccCccceeEEeecCCC--C---Ccc------C
Q 013521 147 DISR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAG-----KFLKETGKYRNIVYMNCRPE--N---NFF------P 207 (441)
Q Consensus 147 al~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~-----~~~~~~~~~~~v~~v~~~~~--~---~~~------~ 207 (441)
|+.. +.... ..++.|++.+++|+++...+..++... .+.+.. ..+..++.... . +.. .
T Consensus 134 A~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~ 210 (451)
T 3oks_A 134 AVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFA---PEIYRAPLSYPFRDAEFGKELATDGEL 210 (451)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCC---SSEEEECCCCHHHHGGGCTTTTTCHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCC---CCcEEeCCCccccccccccccchhhHH
Confidence 9997 43333 245899999999999876666554321 011000 14455554310 0 000 0
Q ss_pred CC-------CC--CCCccEEEEcCCCCccc--cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 208 DL-------ST--TSRTDIIFFCSPNNPTG--HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 208 ~~-------~~--~~~~~~v~i~~p~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
++ ++ .++..++++++|.|++| ...+++.+++|.++|++||+++|+||+|.+|...+.........-.++
T Consensus 211 ~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd 290 (451)
T 3oks_A 211 AAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPD 290 (451)
T ss_dssp HHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred HHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCC
Confidence 01 10 12445667778866665 445778899999999999999999999998765543322322322233
Q ss_pred eeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013521 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE 356 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 356 (441)
+.||||.++ +|+|+||++++++++ +.+.........+.++++|.++.++++.... +.+.+++++
T Consensus 291 ----i~t~sK~l~-~G~~iG~v~~~~~~~--------~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~ 354 (451)
T 3oks_A 291 ----LIVTAKGIA-GGLPLSAVTGRAEIM--------DSPHVSGLGGTYGGNPIACAAALATIETIES---EGLVARAQQ 354 (451)
T ss_dssp ----EEEECGGGG-TTSSCEEEEEEHHHH--------TCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHH
T ss_pred ----eeeehhhhh-CCcceEEEEECHHHH--------hhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHH
Confidence 338999998 699999999998874 2232223344556789999998888862111 223344444
Q ss_pred HHHHHHHHH----HhCC-CeeeCCCCceEEEEEcCC--------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe
Q 013521 357 NAKIIVDAF----QSLG-LKVNGGKNAPYVWVQFPG--------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA 423 (441)
Q Consensus 357 ~~~~l~~~L----~~~g-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~ 423 (441)
+.+++.+.| ++++ +.... ..|.++|+.+.. ....++...+++ +||.+.|+..| .+++||++
T Consensus 355 ~~~~l~~~L~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~~ 428 (451)
T 3oks_A 355 IEKIMKDRLGRLQAEDDRIGDVR-GRGAMIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTY----GNVVRFLP 428 (451)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEE-EETTEEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT----SCEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCeEEEE-EeeEEEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCC----CCEEEEEC
Confidence 444444444 4443 33333 357788888732 113445566665 59999997654 35899985
Q ss_pred --ecCHHHHHHHHHHHHhhC
Q 013521 424 --FGHREYISEACRRLKNFL 441 (441)
Q Consensus 424 --~~~~~~~~~~l~~l~~~l 441 (441)
..+++++++++++|++++
T Consensus 429 ~~~~t~e~i~~~l~~l~~~l 448 (451)
T 3oks_A 429 PLSIGDDLLNEGLDVLEEVL 448 (451)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 458999999999998763
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=243.59 Aligned_cols=332 Identities=11% Similarity=0.108 Sum_probs=208.5
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..+.. .+. .+|.+.+++.+.+.+. ....| +.....+|++++++++ + .+++|++|+|++++
T Consensus 54 g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-~~~~~~~l~~~la~~~----~-~~~~v~~~~sGsea 123 (434)
T 3l44_A 54 GNKYIDYLAAYGPIITGHAHPHITKAITTAAENG----VLYGT-PTALEVKFAKMLKEAM----P-ALDKVRFVNSGTEA 123 (434)
T ss_dssp CCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHC----SCCSS-CCHHHHHHHHHHHHHC----T-TCSEEEEESSHHHH
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHHHHhC----cCCCC-CCHHHHHHHHHHHHhC----C-CCCEEEEeCchHHH
Confidence 567899987752 333 5899999999988752 22234 4556778888888874 4 68999999999999
Q ss_pred HHH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhcccccccc---ccCc-----cceeEEeecCCCCCccCCCCC----C
Q 013521 148 ISR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK---ETGK-----YRNIVYMNCRPENNFFPDLST----T 212 (441)
Q Consensus 148 l~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~---~~~~-----~~~v~~v~~~~~~~~~~~~~~----~ 212 (441)
+.. +..+. .+++.|++.+|+|+++...+...+..+.... .... ..++..+|.++ ..++++ .
T Consensus 124 ~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~le~~l~~~ 199 (434)
T 3l44_A 124 VMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNN----VETLKEALDKW 199 (434)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCccc----HHHHHHHHHhC
Confidence 997 44443 3778999999999987554443332111000 0000 00233333321 111111 1
Q ss_pred -CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
+++++ ++++| +|++|.+. +++.+++|.++|++||+++|+||+|.+| ..+.........-.++ +.||||.++
T Consensus 200 ~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~ 273 (434)
T 3l44_A 200 GHEVAA-ILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPD----LTALGKVIG 273 (434)
T ss_dssp GGGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCS----EEEEEGGGG
T ss_pred CCCEEE-EEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCC----eeehhhhhc
Confidence 23444 55566 55666655 8999999999999999999999999988 4332222222222233 458999998
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHH---HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNR---IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+|+|+||++++++++ +.+.. .......+.+++++.++.++++.... +.+.++++++++.+.+.|+
T Consensus 274 -~G~~iG~~~~~~~i~--------~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~ 341 (434)
T 3l44_A 274 -GGLPIGAYGGKKEIM--------EQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGIL 341 (434)
T ss_dssp -TTSSCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHH
T ss_pred -CCcCeeeEEEcHHHH--------HhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHH
Confidence 999999999988774 22222 11223445788899888888762111 2233444444444444444
Q ss_pred ----hCCCeeeCCCCceEEEEEcCCC--C------------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHH
Q 013521 367 ----SLGLKVNGGKNAPYVWVQFPGS--S------------SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHRE 428 (441)
Q Consensus 367 ----~~g~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 428 (441)
++++....+..|.++++.+... . ..++...+++ +||.+.|+. .+++|+++..+++
T Consensus 342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~rl~~~~t~e 414 (434)
T 3l44_A 342 EQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSK------YEAWFLTTEHTKE 414 (434)
T ss_dssp HHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSST------TCCEECCTTCCHH
T ss_pred HHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecC------CCcEEEecccCHH
Confidence 3444322234677888877421 1 1445666665 499999864 3578998878999
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
++++++++|++++
T Consensus 415 ~i~~~l~~l~~~l 427 (434)
T 3l44_A 415 DIEYTIEAVGRAF 427 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=240.49 Aligned_cols=312 Identities=16% Similarity=0.201 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcC----CCCE--
Q 013521 88 DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLG----SNVT-- 160 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~----~gd~-- 160 (441)
+.+.+++.+.+.. +...|++..+..+||+++++++ +. ++|++|+|+++|+.+ +..+++ +||.
T Consensus 55 ~~v~~a~~~~~~~-----~~~~y~~~~~~~~l~~~la~~~----~~--~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~ 123 (467)
T 1ax4_A 55 NAMSDHQWAAMIT-----GDEAYAGSRNYYDLKDKAKELF----NY--DYIIPAHQGRGAENILFPVLLKYKQKEGKAKN 123 (467)
T ss_dssp CCEEHHHHHHHHT-----CCCCSSSCHHHHHHHHHHHHHH----CC--CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHHhh-----cccccccCccHHHHHHHHHHHc----CC--CcEEEcCCcHHHHHHHHHHHHHhhccCCCccc
Confidence 5566666666542 2336877789999999999997 33 799999999999997 666677 9998
Q ss_pred -EEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC----C----CCccCCCCC-----C----CCccEEEEcC
Q 013521 161 -VAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP----E----NNFFPDLST-----T----SRTDIIFFCS 222 (441)
Q Consensus 161 -Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~----~----~~~~~~~~~-----~----~~~~~v~i~~ 222 (441)
|+++.+.|..+...+...| .+++.++... + .+...+++. . +++++|++++
T Consensus 124 ~viv~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~ 191 (467)
T 1ax4_A 124 PVFISNFHFDTTAAHVELNG------------CKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTV 191 (467)
T ss_dssp CEEEESSCCHHHHHHHHHTT------------CEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred eEEEeccccchhhHHHhccC------------CceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEec
Confidence 9998777788777777777 3555554321 0 011223221 1 2689999999
Q ss_pred CCCcc-ccCCCHHHHHHHHHHHHHcCcEEEEcccccc----c------ccCCCCCcccccC----CCcceeEEEecCCcc
Q 013521 223 PNNPT-GHAATWQQLKKLVEFAKANGSIIVYDSAYAA----Y------ITDPSPRSIYEIP----GAREVAIEISSFSKF 287 (441)
Q Consensus 223 p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~----~------~~~~~~~~~~~~~----~~~~~~i~i~S~SK~ 287 (441)
||||| |.+++.+++++|+++|++||+++|+|+++.. | .+.+ .++..+. ...| +++.|+||.
T Consensus 192 ~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d--~~~~s~sK~ 267 (467)
T 1ax4_A 192 TCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKN--ATIKEVIFDMYKYAD--ALTMSAKKD 267 (467)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTT--CCHHHHHHHHGGGCS--EEEEETTST
T ss_pred cccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCC--Cchhhhhhhhccccc--eEEEecccc
Confidence 99999 8999999999999999999999999998652 0 1222 2222221 1122 566899999
Q ss_pred cCCc-cceeEEEEee-c-cccccCCchhHHHHHHHHhh-----hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 013521 288 AGFT-GVRLGWTVVP-E-ELRYSNGYPVIKDFNRIVCT-----CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAK 359 (441)
Q Consensus 288 ~~~~-G~r~G~l~~~-~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (441)
+|++ | ||++++ + ++ .+.+...... .....+...+.++...+... .+ +...+...++++
T Consensus 268 ~g~~~G---g~~~~~d~~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~--~~~~~~~~~~~~ 333 (467)
T 1ax4_A 268 PLLNIG---GLVAIRDNEEI--------FTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG-TE--EEYLHYRIGQVK 333 (467)
T ss_dssp TCCSSC---EEEEESSCHHH--------HHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHH
T ss_pred CCCCcc---eEEEeCCHHHH--------HHHHHhhccccccccccCCccchHHHHHHHHHHHh-hh--hhHHHHHHHHHH
Confidence 9865 4 777777 4 45 3444333221 11122332222222233211 11 112233346678
Q ss_pred HHHHHHHhCCCeeeCCCCceEEEEE-------cCC--CChHHHHHHHHHhcCeEEeC-CCCc-CC---------CCCCeE
Q 013521 360 IIVDAFQSLGLKVNGGKNAPYVWVQ-------FPG--SSSWDVFAEILEKTHILTIP-GSGF-GP---------GGNEHI 419 (441)
Q Consensus 360 ~l~~~L~~~g~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~ll~~~gi~v~p-g~~f-~~---------~~~~~i 419 (441)
.+.+.|++.++.+..+.+++++|++ ++. .+..++...|++++||.+.| |+.| +. ...+++
T Consensus 334 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~i 413 (467)
T 1ax4_A 334 YLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFM 413 (467)
T ss_dssp HHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEE
T ss_pred HHHHHHHhCCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceE
Confidence 8888888777877777789999999 431 23566777775677999999 6542 21 124799
Q ss_pred EEEee---cCHHHHHHHHHHHHhh
Q 013521 420 RVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 420 Rls~~---~~~~~~~~~l~~l~~~ 440 (441)
||++. .+++++++++++|+++
T Consensus 414 Rls~~~~~~t~e~i~~~~~~l~~~ 437 (467)
T 1ax4_A 414 RLTIARRVYTNDHMDYIADALIGL 437 (467)
T ss_dssp EEECCTTSSCHHHHHHHHHHHHTT
T ss_pred EEecccccCCHHHHHHHHHHHHHH
Confidence 99985 5799999999999875
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=238.20 Aligned_cols=333 Identities=16% Similarity=0.160 Sum_probs=230.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC---CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA---EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
.++.|+ +..+ ...+.+.+++.+.. ..+..|++ ..|..++++++++++.+.++.+. .+++|+|+++++.
T Consensus 67 ~~~~lg-~~~~-~~~p~v~~~~~~~~------~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~ 137 (474)
T 1wyu_B 67 TFYPLG-SCTM-KYNPKLHEEAARLF------ADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGEL 137 (474)
T ss_dssp SCCCBT-TTCC-CCCCHHHHHHHHTT------SSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHH
T ss_pred Cccccc-cccc-cCCHHHHHHHHHHH------HhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHH
Confidence 467788 5433 33345556665531 23344543 56888999999999887666654 4778899999887
Q ss_pred H-HHHh----cCCCC-----EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCC
Q 013521 150 R-LQML----LGSNV-----TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSR 214 (441)
Q Consensus 150 ~-l~~l----~~~gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~ 214 (441)
+ +..+ .++|| +|+++.|+|+.+...+...| .+++.++.+.++ ..|++. .++
T Consensus 138 ~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G------------~~vv~v~~~~~~--~~d~~~L~~~i~~~ 203 (474)
T 1wyu_B 138 TGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAG------------YQVREIPSGPEG--EVDLEALKRELGPH 203 (474)
T ss_dssp HHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTT------------CEEEEECBCTTS--SBCHHHHHHHCSTT
T ss_pred HHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCC------------CEEEEecCCCCC--CcCHHHHHHhhCCC
Confidence 5 4332 36887 99999999999999988888 589999986543 333221 367
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc-c-
Q 013521 215 TDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT-G- 292 (441)
Q Consensus 215 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~-G- 292 (441)
+++|++++| ||||.+. +++++|+++|++||+++|+|++|..+..+ ..+...+ +.++++.|+||+++.| |
T Consensus 204 t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g--~~~~~~~----g~di~~~s~~K~~~~p~g~ 274 (474)
T 1wyu_B 204 VAALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMG--WARPGDM----GFDVVHLNLHKTFTVPHGG 274 (474)
T ss_dssp EEEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTT--TCCHHHH----TCSEEECCTTTTTCCCCTT
T ss_pred ceEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhcc--CCCcccC----CCcEEEEeCccccccCCCC
Confidence 899999998 6899883 34999999999999999999999865542 1222222 2458899999999766 4
Q ss_pred --ceeEEEEeeccccccCCchhHH----HH----HHH---HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 013521 293 --VRLGWTVVPEELRYSNGYPVIK----DF----NRI---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAK 359 (441)
Q Consensus 293 --~r~G~l~~~~~~~~~~~~~~~~----~~----~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (441)
+|+||++++++++..-...... .+ ... ......+.+.+.+.++.+.+...+.++++++.++++++++
T Consensus 275 gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~ 354 (474)
T 1wyu_B 275 GGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNAR 354 (474)
T ss_dssp SCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999998874211000000 00 000 0001122566778878877764445677888999999999
Q ss_pred HHHHHHHhCCCeeeCCCCceE--EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHH
Q 013521 360 IIVDAFQSLGLKVNGGKNAPY--VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEAC 434 (441)
Q Consensus 360 ~l~~~L~~~g~~~~~~~~~~~--~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l 434 (441)
++.+.|++.|+++..+ ++.+ +|+.++ +.+..++.++|+++ ||.+ |+..|.....+++||++.. +++++++++
T Consensus 355 ~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~ 431 (474)
T 1wyu_B 355 YLKELLKEKGYRVPYD-GPSMHEFVAQPPEGFRALDLAKGLLEL-GFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFA 431 (474)
T ss_dssp HHHHHHHHTTCBCSSC-SSCCSCEEEBCSTTCCHHHHHHHHHHT-TCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHH
T ss_pred HHHHHHhhcCcEecCC-CCcceEEEEEcCCCCCHHHHHHHHHHC-Cccc-cccccccccCCEEEEEeecCCCHHHHHHHH
Confidence 9999999888776332 2233 677774 34667788887766 9985 6666653346799999865 799999999
Q ss_pred HHHHhh
Q 013521 435 RRLKNF 440 (441)
Q Consensus 435 ~~l~~~ 440 (441)
++|+++
T Consensus 432 ~~L~~~ 437 (474)
T 1wyu_B 432 EAMGAL 437 (474)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=232.02 Aligned_cols=334 Identities=13% Similarity=0.089 Sum_probs=212.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhcc-C-CCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALS-T-VKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~-~-~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.++|..+++. .++.+.+++.+.+.... . ..+...|.......++++.+++++.+.+++++++|++++| ++++.+
T Consensus 26 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sG-t~a~~~ 102 (417)
T 3n0l_A 26 EGLEMIASENF--TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSG-SQANQG 102 (417)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHH
T ss_pred cCeeeecccCC--CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccH-HHHHHH
Confidence 36888766543 47889999988774321 0 0111123333344566665555555545888888999999 688887
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHh---HHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C-CCccEEEE
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYID---TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T-SRTDIIFF 220 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~-~~~~~v~i 220 (441)
+..++++||+|+++.|+|+++.. .....|.. ..++.++.+. ++..|++. . +++++|++
T Consensus 103 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~v~~ 170 (417)
T 3n0l_A 103 VYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKM----------YESCFYGVEL--DGRIDYEKVREIAKKEKPKLIVC 170 (417)
T ss_dssp HHHHHSCTTCEEEEECC----------------CC----------SEEEEECCCT--TSSCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHhcCCCCEEEecccccccccchhhhhhhhcce----------eeeEeccCCC--CCCcCHHHHHHHHHhcCCeEEEE
Confidence 67788999999999999988654 22222310 2456666652 33334332 1 47899998
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA-AYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
++|+| |..++ +++|.++|++||+++|+||+|. .+.+.+..... + ++.++++.|+||.+ +|+|.||++
T Consensus 171 ~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~---~~~di~~~s~sK~l--~g~~~G~~~ 238 (417)
T 3n0l_A 171 GASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSP--F---PYAHVVSSTTHKTL--RGPRGGIIM 238 (417)
T ss_dssp CCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCC--T---TTCSEEEEESSTTT--CSCSCEEEE
T ss_pred CCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCc--c---ccceEEEeeCcccc--CCCCeeEEE
Confidence 88886 78888 8899999999999999999964 33333321111 1 12348999999988 688999999
Q ss_pred eec-cccccCCchhHHHHHHHHhhhcC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC-CC
Q 013521 300 VPE-ELRYSNGYPVIKDFNRIVCTCFN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG-GK 376 (441)
Q Consensus 300 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~ 376 (441)
+++ ++ .+.+......... +++...+.++.+++......+++.++++++++++.+.+.|.+.|+.+.. +.
T Consensus 239 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 310 (417)
T 3n0l_A 239 TNDEEL--------AKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDGT 310 (417)
T ss_dssp ESCHHH--------HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred ECCHHH--------HHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCCC
Confidence 984 54 3455544333222 2334444444444432112456788889999999999999988887754 24
Q ss_pred CceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC----CCCCCeEEEEee------cCHHHHHHHHHHHHhhC
Q 013521 377 NAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFG----PGGNEHIRVSAF------GHREYISEACRRLKNFL 441 (441)
Q Consensus 377 ~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~----~~~~~~iRls~~------~~~~~~~~~l~~l~~~l 441 (441)
.++++|+.++. ..+.+.+..+++++||.+.++..+. +...+.+|+++. .+++++++++++|++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l 386 (417)
T 3n0l_A 311 DNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADIL 386 (417)
T ss_dssp SSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 56789999863 2234445556667799999765332 123467999962 35799999999998753
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=239.65 Aligned_cols=325 Identities=10% Similarity=0.065 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC--CcE--EEcCCcHHHHHH-HHHhcCCC----
Q 013521 88 DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG--DEI--FISDGAQSDISR-LQMLLGSN---- 158 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~--~~I--~~t~G~~~al~~-l~~l~~~g---- 158 (441)
+.+.+++.+.+..... ....+|....+..++++++++++.+.++.++ +++ ++|+|+++++.+ +..+.++|
T Consensus 110 ~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~ 188 (514)
T 3mad_A 110 EHHIAFLNEVYALQSQ-SNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATK 188 (514)
T ss_dssp HHHHHHHHHHHHHHTT-CCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh-cCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhc
Confidence 4455555555544332 2333455556778899999888887666654 788 999999999997 56666665
Q ss_pred ----CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccccCC
Q 013521 159 ----VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTGHAA 231 (441)
Q Consensus 159 ----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~~~ 231 (441)
|+|+++.|+|+++...+...| .+++.++.+.+..++++ +++ .+++++|++++|+||||.+.
T Consensus 189 g~~~d~Vi~~~~~~~~~~~~~~~~G------------~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~ 256 (514)
T 3mad_A 189 GITAPEAVVPVSAHAAFDKAAQYFG------------IKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVD 256 (514)
T ss_dssp CCSSCEEEEETTSCTHHHHHHHHHT------------CEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCC
T ss_pred CCCCCeEEEeCccchHHHHHHHHcC------------CeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCcccc
Confidence 999999999999999999999 58999998764322221 211 35789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccC-----CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITD-----PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~-----~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
+ +++|.++|++||+++|+|++|+.+... +.+.+.... ...+.++++.|++|.++ +|.++||++++++.+.
T Consensus 257 ~---l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~-~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~ 331 (514)
T 3mad_A 257 P---IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDF-RLEGVTSVSADTHKYGY-GAKGTSVILYRRPDLL 331 (514)
T ss_dssp C---HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCST-TSTTCCEEEECTTTTTC-CCSSCEEEEESSHHHH
T ss_pred C---HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccc-cCCCCcEEEECchhccC-CCCCeEEEEEeCHHHh
Confidence 9 789999999999999999999976541 111111111 12345688999999975 7889999999886641
Q ss_pred cCCchhHHHHH--HHHhhh-cCCCc---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCce
Q 013521 307 SNGYPVIKDFN--RIVCTC-FNGAS---NIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAP 379 (441)
Q Consensus 307 ~~~~~~~~~~~--~~~~~~-~~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 379 (441)
.........+. ...... ..+.+ .+.+.+++..+. ..++++..++.+++++++.+.|+++ ++++..++ ..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~ 407 (514)
T 3mad_A 332 HYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG---EEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-LW 407 (514)
T ss_dssp TTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-SS
T ss_pred ccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-eE
Confidence 10000000000 000000 11122 233444443332 3456888889999999999999987 88887654 44
Q ss_pred EEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee---cCHHHHHHHHHHHHhh
Q 013521 380 YVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 380 ~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~---~~~~~~~~~l~~l~~~ 440 (441)
++|+..++.+..++.+.|.++ ||.+ +|..| ++++|+++. .+++++++++++|+++
T Consensus 408 ~~~~~~~~~~~~~l~~~L~~~-Gi~v-~g~~~----~~~~Ri~~~~~~~~~e~i~~~l~~L~~~ 465 (514)
T 3mad_A 408 VIAVASDELNIYQVMEEMAGR-GWRL-NGLHR----PPAFHVALTLRHTEPGVVDRFLADLQDA 465 (514)
T ss_dssp EEEEECSSSCHHHHHHHHHTT-TCBC-EEETT----TTEEEEECCGGGGSTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHhc-CCEe-ccCCC----CCeEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 788887665667777777665 9988 54433 468999974 2568999999999875
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=233.92 Aligned_cols=313 Identities=17% Similarity=0.097 Sum_probs=219.1
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.++++|+.|.+++ ++.+.+++.+.+.. ..|.+..+..++++++|+++ +.+ ++++++|+++++.+
T Consensus 30 ~~~id~~~~~~~~--~~~v~~a~~~~~~~-------~~y~~~~~~~~l~~~la~~~----~~~--~~v~~~~Gt~a~~~~ 94 (399)
T 2oga_A 30 VPFLDLKAAYEEL--RAETDAAIARVLDS-------GRYLLGPELEGFEAEFAAYC----ETD--HAVGVNSGMDALQLA 94 (399)
T ss_dssp BCSCCHHHHHHHT--HHHHHHHHHHHHHH-------TCCSSSHHHHHHHHHHHHHT----TSS--EEEEESCHHHHHHHH
T ss_pred CcccccCcCCCCC--CHHHHHHHHHHHhc-------CCCCCchhHHHHHHHHHHHH----CCC--eEEEecCHHHHHHHH
Confidence 3678888887654 37888899888764 14666678899999999996 443 66777777899987
Q ss_pred HHHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCC
Q 013521 151 LQML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPN 224 (441)
Q Consensus 151 l~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~ 224 (441)
+..+ +++||+|+++.|+|+++...+...| .+++.++.+++ ++..+++. .+++++|+ |+
T Consensus 95 l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~ 158 (399)
T 2oga_A 95 LRGLGIGPGDEVIVPSHTYIASWLAVSATG------------ATPVPVEPHED-HPTLDPLLVEKAITPRTRALL---PV 158 (399)
T ss_dssp HHHTTCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCSS-SSSBCHHHHHHHCCTTEEEEC---CB
T ss_pred HHHhCCCCcCEEEECCCccHHHHHHHHHCC------------CEEEEEecCCC-CCCcCHHHHHHhcCCCCeEEE---Ee
Confidence 6667 7999999999999999999888888 58888888753 23333221 24677766 57
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecC--CcccCCccceeEEEEee
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSF--SKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~G~r~G~l~~~ 301 (441)
||||.+.+ +++|.++|+++|+++|+|++|+.+. ++. ..+..+ . .+++.|+ ||.+|.+| |+||++++
T Consensus 159 n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~--~~~~~~---~--di~~~S~~~sK~~~~~G-~~g~~~~~ 227 (399)
T 2oga_A 159 HLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRG--RRIGAG---S--SVAAFSFYPGKNLGCFG-DGGAVVTG 227 (399)
T ss_dssp CGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETT--EETTCT---T--CEEEEECCTTSSSCCSS-CCEEEEES
T ss_pred CCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCC--eecccc---c--CEEEEeCCCCccCCcCC-ceEEEEeC
Confidence 89999988 8899999999999999999998653 222 112111 1 3888898 79999669 99999987
Q ss_pred -ccccccCCchhHHHHHHHHhhhc------------CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 302 -EELRYSNGYPVIKDFNRIVCTCF------------NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+++ .+.+........ ...+.+.+.++.+.++ +++...++.+++++.+.+.|+++
T Consensus 228 ~~~~--------~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~ 294 (399)
T 2oga_A 228 DPEL--------AERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLA-----HLDSWNGRRSALAAEYLSGLAGL 294 (399)
T ss_dssp CHHH--------HHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHH--------HHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccC
Confidence 454 344544333211 1345666655555553 23445566667788888889876
Q ss_pred -CCeeeC-CCCceEEE--EEcCCCChHHHHHHHHHhcCeEEeCCCCcC--------CCC-------------CCeEEEEe
Q 013521 369 -GLKVNG-GKNAPYVW--VQFPGSSSWDVFAEILEKTHILTIPGSGFG--------PGG-------------NEHIRVSA 423 (441)
Q Consensus 369 -g~~~~~-~~~~~~~~--~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--------~~~-------------~~~iRls~ 423 (441)
|+.+.. +..+.++| +.+...+..++.+.|.+ +||.+.++.... ..+ .++|||++
T Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~ 373 (399)
T 2oga_A 295 PGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDA-RGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPI 373 (399)
T ss_dssp TTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHH-TTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECC
T ss_pred CCccccCCCCCCcceeEEEEEECCCHHHHHHHHHH-CCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccC
Confidence 776642 34556665 33333355667677655 599998853210 000 26799997
Q ss_pred e--cCHHHHHHHHHHHHhh
Q 013521 424 F--GHREYISEACRRLKNF 440 (441)
Q Consensus 424 ~--~~~~~~~~~l~~l~~~ 440 (441)
. .++++++++++.|+++
T Consensus 374 ~~~~t~edi~~~~~~l~~~ 392 (399)
T 2oga_A 374 GPHLERPQALRVIDAVREW 392 (399)
T ss_dssp STTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3 4899999999999875
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=236.64 Aligned_cols=343 Identities=12% Similarity=0.023 Sum_probs=203.2
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|. ..+ ..++.+.+++.+.+.+.. .|....+..+.++++++++.+.++...++|++|+|+++|
T Consensus 43 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~------~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 116 (448)
T 3dod_A 43 GKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIA------HSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEA 116 (448)
T ss_dssp SCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCS------CCCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcc------CccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHH
Confidence 45688888763 222 257999999999886421 232334556677778877776566667899999999999
Q ss_pred HHH-HHHhcC----CC----CEEEEeCCCchhhHhHHHHhccccccccc-cCccceeEEeecCCCCCc------------
Q 013521 148 ISR-LQMLLG----SN----VTVAVQDPSFPAYIDTSVIVGQAGKFLKE-TGKYRNIVYMNCRPENNF------------ 205 (441)
Q Consensus 148 l~~-l~~l~~----~g----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~v~~v~~~~~~~~------------ 205 (441)
+.. +..+.. +| |.|++.+|+|+++.......+....+... ......+..++.......
T Consensus 117 ~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (448)
T 3dod_A 117 MEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQC 196 (448)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHH
Confidence 997 544443 44 99999999999876554444321110000 000012344443221000
Q ss_pred cCCCCC-----CCCccEEEEcCCC-Cccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCccee
Q 013521 206 FPDLST-----TSRTDIIFFCSPN-NPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVA 278 (441)
Q Consensus 206 ~~~~~~-----~~~~~~v~i~~p~-NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~ 278 (441)
..++++ .+++++|++..++ |++| .+.+++.+++|.++|++||+++|+||+|.+|...+.........-.++
T Consensus 197 ~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~d-- 274 (448)
T 3dod_A 197 LRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPD-- 274 (448)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS--
T ss_pred HHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCC--
Confidence 011221 1345555544445 8888 556888899999999999999999999998765543322222221233
Q ss_pred EEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH-------HHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHH
Q 013521 279 IEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR-------IVCTCFNGASNIVQAGGLACLSPDGF-QALRT 349 (441)
Q Consensus 279 i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~ 349 (441)
+.+|||.++ +| +|+||++++++++ +.+.. .......+.+++++.++.++++.... ..+++
T Consensus 275 --i~t~sK~l~-~G~~~ig~v~~~~~~~--------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 343 (448)
T 3dod_A 275 --LMAAGKGIT-GGYLPIAVTFATEDIY--------KAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQ 343 (448)
T ss_dssp --EEEECGGGG-TTSSCCEEEEEEHHHH--------HTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred --EEEeccccc-CCcCceEEEEECHHHH--------HHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHH
Confidence 447999998 69 5999999998873 33322 22223445788999998888862111 22334
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCC------------hHHHHHHHHHhcCeEEeCCCCcCCCCCC
Q 013521 350 VIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSS------------SWDVFAEILEKTHILTIPGSGFGPGGNE 417 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 417 (441)
.++..+..++.+.+ +.+++........|.++|+.++... ..++...++++ ||.+.|+ .+
T Consensus 344 ~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~-------~~ 414 (448)
T 3dod_A 344 VAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTRPL-------GD 414 (448)
T ss_dssp HHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECCEE-------TT
T ss_pred HHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEecc-------CC
Confidence 44444444444444 4444322222235778899886321 25677777765 9999886 26
Q ss_pred eEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 418 HIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 418 ~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
++||+ +..+++++++++++|++++
T Consensus 415 ~iRi~~~~~~t~e~i~~~l~~l~~~l 440 (448)
T 3dod_A 415 VIAFLPPLASTAEELSEMVAIMKQAI 440 (448)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 89996 4668999999999998763
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=235.62 Aligned_cols=339 Identities=14% Similarity=0.144 Sum_probs=223.2
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccC--CCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC----cEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALST--VKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD----EIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~----~I~~t~G~~~ 146 (441)
+.|+|..+++ ++|+.+.+++.+.+.+... .++...|+...+..++++.+++++.+.++++++ +|++++|+ +
T Consensus 45 ~~i~L~a~e~--~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~ 121 (483)
T 1rv3_A 45 VGLELIASEN--FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-P 121 (483)
T ss_dssp SSEECCTTCC--CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-H
T ss_pred cCeEEEcCCC--CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-H
Confidence 4799987765 4688999999887764210 011112444445677887888888777788764 49999999 6
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHhHH--------HHhccccccccccCccceeEEeecCCCCCccCCCCC-----C
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYIDTS--------VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T 212 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~--------~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~ 212 (441)
++.+ +.++++|||+|++++|+|.++.... ...|. ..+++.++++++ ++..|++. .
T Consensus 122 an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~----------~~~~v~~~~~~~-~~~iD~d~le~~i~ 190 (483)
T 1rv3_A 122 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSI----------FFESMAYKVNPD-TGYIDYDRLEENAR 190 (483)
T ss_dssp HHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHH----------HSEEEEECBCTT-TCSBCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccc----------eEEEEECccccC-CCcCCHHHHHHHHh
Confidence 6665 7888999999999999998875422 22221 024444444533 33444332 2
Q ss_pred -CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCC-CCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPS-PRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
+++|+|++ +++||+ .+++ +++|.++|++||+++|+|++|.. +.+.+. +.++ + ...+++.|+||++
T Consensus 191 ~~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~---~---~~div~~s~~K~l- 258 (483)
T 1rv3_A 191 LFHPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF---E---HCHVVTTTTHKTL- 258 (483)
T ss_dssp HHCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG---G---TCSEEEEESSGGG-
T ss_pred hcCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCC---C---CCcEEEecCcccC-
Confidence 68999998 899988 8888 88999999999999999999873 333222 2222 1 2248899999987
Q ss_pred CccceeEEEEeeccccccCCc-------hhHHHHHHHHh-hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTVVPEELRYSNGY-------PVIKDFNRIVC-TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
+|+|.||+++++++...... ...+.+..... ....+++.....+..+++......+++.++++++++++++
T Consensus 259 -~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l 337 (483)
T 1rv3_A 259 -RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRAL 337 (483)
T ss_dssp -CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 58899999999874210000 01222222111 1112233333333333443211235678889999999999
Q ss_pred HHHHHhCCCeeeCCC-CceEEEEEcC--CCChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEeec--C----HH
Q 013521 362 VDAFQSLGLKVNGGK-NAPYVWVQFP--GSSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSAFG--H----RE 428 (441)
Q Consensus 362 ~~~L~~~g~~~~~~~-~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~~~--~----~~ 428 (441)
.+.|.+.|+++..+. +.+++|+++. +.+..++ ..+|++.||.+. ||..+ +.+++++||++.. + ++
T Consensus 338 ~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~-~~~L~~~gI~v~~~~~pg~~~-~~~~~~iRis~~~~~t~g~~~e 415 (483)
T 1rv3_A 338 SAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRA-EKVLEACSIACNKNTCPGDKS-ALRPSGLRLGTPALTSRGLLEK 415 (483)
T ss_dssp HHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHH-HHHHHHTTEECEEECCSSCSC-TTSCCEEEEECHHHHHTTCCHH
T ss_pred HHHHHhcCCEeccCCCCCceEEEeccCCCCCHHHH-HHHHHhCCcEEecCCCCCCCc-CCCCceEEeecCCcccCCCCHH
Confidence 999998899887643 3468899986 3344454 555667799999 98742 2246799999843 5 89
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|.++
T Consensus 416 di~~~~~~l~~~ 427 (483)
T 1rv3_A 416 DFQKVAHFIHRG 427 (483)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-28 Score=239.93 Aligned_cols=330 Identities=12% Similarity=0.070 Sum_probs=201.5
Q ss_pred CCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++||+.+.+ ++ ..++.+.+++.+.+... . .| .+..++++++++++.+.++ .+++|++|+|+++|
T Consensus 56 g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~----~--~~---~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA 125 (453)
T 2cy8_A 56 GNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHG----V--QY---AASHPLEVRWAERIVAAFP-SIRKLRFTGSGTET 125 (453)
T ss_dssp CCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT----C--SS---CSSCHHHHHHHHHHHHHCT-TCSEEEEESCHHHH
T ss_pred CCEEEECcccHhhcccCCCCHHHHHHHHHHHHhC----C--CC---CCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHH
Confidence 456899988853 22 36889999999988641 1 22 1356789999999877555 78899999999999
Q ss_pred HHH-HHH--hcCCCCEEEEeCCCchhhHhHHHH-hcc-------ccccccccCccceeEEeecCCCCCccCCCCC--C--
Q 013521 148 ISR-LQM--LLGSNVTVAVQDPSFPAYIDTSVI-VGQ-------AGKFLKETGKYRNIVYMNCRPENNFFPDLST--T-- 212 (441)
Q Consensus 148 l~~-l~~--l~~~gd~Vlv~~p~y~~~~~~~~~-~g~-------~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~-- 212 (441)
+.+ +.. .+.+++.|++.+|+|+++...+.. .|. .|. ... ....+..++.+ + ..++++ .
T Consensus 126 ~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~-~~~--~~~~~~~~~~~---d-~~~le~~l~~~ 198 (453)
T 2cy8_A 126 TLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGV-LPE--TTANTLLIRPD---D-IEGMREVFANH 198 (453)
T ss_dssp HHHHHHHHHHHHCCCEEEEECC-------------------------------CGGGEEEECTT---C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCC-Ccc--ccCceeecCCC---C-HHHHHHHHHhc
Confidence 997 443 133456888888999987554322 111 010 000 00123444431 1 111221 1
Q ss_pred -CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
+++++| +++| +||||.++ +++++++|.++|++||+++|+||+|.++ ..+.........-.++ +.||||.++
T Consensus 199 ~~~~~~v-i~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~ 272 (453)
T 2cy8_A 199 GSDIAAF-IAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPD----LTCLAKASA 272 (453)
T ss_dssp GGGEEEE-EECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCS----EEEEEGGGG
T ss_pred CCCEEEE-EECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCc----EEEEChhhh
Confidence 245554 5666 57899765 7999999999999999999999999977 4332222212221233 348999998
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP-DGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+|+|+||++++++++..-... . ..........+.+++++.++.++++. . .+.+.++++++++++.+.|+++
T Consensus 273 -~G~~~G~v~~~~~~~~~l~~~--~-~~~~~~~~t~~~n~~~~aa~~aal~~~~----~~~~~~~~~~~~~~l~~~L~~~ 344 (453)
T 2cy8_A 273 -GGLPGGILGGREDVMGVLSRG--S-DRKVLHQGTFTGNPITAAAAIAAIDTIL----EDDVCAKINDLGQFAREAMNHL 344 (453)
T ss_dssp -TTSSCEEEEECHHHHTTSSSC--C----------CCCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcceEEEechHHHHHHhccc--c-CCCceeCCCCCCCHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHH
Confidence 699999999998774221000 0 00011222345788888888877753 2 1344566666777777666553
Q ss_pred ----CCeeeCCCCceEEEEEcCC-----C------------C---hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee
Q 013521 369 ----GLKVNGGKNAPYVWVQFPG-----S------------S---SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF 424 (441)
Q Consensus 369 ----g~~~~~~~~~~~~~~~~~~-----~------------~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~ 424 (441)
++....+..|.++|++++. . + ..++...+++ +||.+.|+ +.+|+++.
T Consensus 345 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~~~--------~~~~l~~~ 415 (453)
T 2cy8_A 345 FARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIGGR--------GSVFLSAQ 415 (453)
T ss_dssp HHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECBTT--------TEEECCTT
T ss_pred HhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCeEEeCC--------CCEEeecc
Confidence 4433223467899999874 1 1 3456677765 59999653 24788877
Q ss_pred cCHHHHHHHHHHHHhh
Q 013521 425 GHREYISEACRRLKNF 440 (441)
Q Consensus 425 ~~~~~~~~~l~~l~~~ 440 (441)
.+++++++++++|+++
T Consensus 416 ~t~~~i~~~l~~l~~~ 431 (453)
T 2cy8_A 416 HEREHVEHLVTTFDRV 431 (453)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7999999999999875
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=231.91 Aligned_cols=335 Identities=16% Similarity=0.115 Sum_probs=199.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhh-ccCCCCCCCCCCCcCcHHHHHHHH-HHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFA-LSTVKGYKGYGAEQGNMALRTAIA-DKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~-~~~~~~~~~Y~~~~g~~~lr~~ia-~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.++|..+.+. .++.+.+++.+.+.+ +........|.+.....++.+.++ +++.+.++.+... ++++|+++++..
T Consensus 33 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-v~~~~Gs~a~~~ 109 (425)
T 3ecd_A 33 SQVELIASENI--VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHAN-VQPHSGAQANGA 109 (425)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHH
T ss_pred cceeeecccCC--CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCce-eecCchHHHHHH
Confidence 36888776653 388999999887742 110001111212112212333333 3333334665433 346777778876
Q ss_pred -HHHhcCCCCEEEEeCCCchhh-HhHHH--HhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEEE
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAY-IDTSV--IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIFF 220 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~-~~~~~--~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~i 220 (441)
+..++++||+|+++.|+|++. ..... ..|.. ..++.++.+++ .+..+++. .+++++|++
T Consensus 110 al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~v~~ 178 (425)
T 3ecd_A 110 VMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKW----------FNALQYGVSRD-TMLIDYDQVEALAQQHKPSLIIA 178 (425)
T ss_dssp HHHHHCCTTCEEEEECC----------------------------CEEEEECCCTT-TSSCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHccCCCCEEEEcccccccceecchhhhhcccc----------eeeeecCCCcc-cCccCHHHHHHHHhhcCCcEEEE
Confidence 677789999999999999882 22221 23310 24556666533 23334322 147899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
++|+||+ ..+ +++|.++|++||++||+||+|.. +.+.+...+... ...+++.|+||++ +|+|+||++
T Consensus 179 ~~~~~~~--~~~---l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-----~~di~~~s~sK~l--~g~~~g~~~ 246 (425)
T 3ecd_A 179 GFSAYPR--KLD---FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-----HAHVVTSTTHKTL--RGPRGGFVL 246 (425)
T ss_dssp ECSCCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-----TCSEEEEESSGGG--CCCSCEEEE
T ss_pred ccccCCC--cCC---HHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-----cCcEEEecCCccc--CCCCcEEEE
Confidence 9999974 334 78999999999999999999653 333332222211 1238899999998 678999999
Q ss_pred eeccccccCCchhHHHHHHHHhhhcC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CC
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG-KN 377 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~ 377 (441)
++++.+ .+.+......... +++...+.++..++.....++++.++++++++++++.+.|.+.|+++..+ ..
T Consensus 247 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 319 (425)
T 3ecd_A 247 TNDEEI-------AKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTD 319 (425)
T ss_dssp ESCHHH-------HHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred eCCHHH-------HHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCC
Confidence 986443 3444433322221 23333333333333221224567888999999999999999988887653 46
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEee--c----CHHHHHHHHHHHHhh
Q 013521 378 APYVWVQFPG-SSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSAF--G----HREYISEACRRLKNF 440 (441)
Q Consensus 378 ~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~~--~----~~~~~~~~l~~l~~~ 440 (441)
++++|+.++. ..+.+.+..+++++||.+. ||..+.+...+++|+++. . ++++++++++.|+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~ 393 (425)
T 3ecd_A 320 NHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEV 393 (425)
T ss_dssp SSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHH
Confidence 7889999862 2334455555667799999 554444444678999941 1 478999999998875
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-28 Score=237.52 Aligned_cols=332 Identities=11% Similarity=0.101 Sum_probs=215.3
Q ss_pred CCCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.+++++|+..|.. .+. .++.+.+++.+.+.+.. ...| +.....+|++++++++ + .+++|++|+|+++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~----~~~~-~~~~~~~l~~~la~~~----~-~~~~v~~~~~Gse 120 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGT----SFGA-PTEIENKLAKLVIERV----P-SIEIVRMVNSGTE 120 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCS----CCSS-CCHHHHHHHHHHHHHS----T-TCSEEEEESSHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCc----CcCC-CCHHHHHHHHHHHHhC----C-CCCEEEEeCChHH
Confidence 3567999988753 333 58999999999887632 2234 5667788888888875 4 6789999999999
Q ss_pred HHHH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhcccccccc---ccCc-----cceeEEeecCCCCCccCCCCC----
Q 013521 147 DISR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK---ETGK-----YRNIVYMNCRPENNFFPDLST---- 211 (441)
Q Consensus 147 al~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~---~~~~-----~~~v~~v~~~~~~~~~~~~~~---- 211 (441)
++.. +..+. .+++.|++.+|+|+++...+...+..+.... .... ...++.++.++ ..++++
T Consensus 121 a~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~le~~l~~ 196 (429)
T 3k28_A 121 ATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYND----LESVKYAFEQ 196 (429)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCC----HHHHHHHHHh
Confidence 9997 44333 3678999999999876544433221111000 0000 00233333321 111111
Q ss_pred -CCCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCccc
Q 013521 212 -TSRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFA 288 (441)
Q Consensus 212 -~~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (441)
.+++++ ++++| +|++|.+. +++++++|.++|++||+++|+||+|.+| ..+.........-.++ +.||||.+
T Consensus 197 ~~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~ 270 (429)
T 3k28_A 197 FGDDIAC-VIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPD----LTCLGKVI 270 (429)
T ss_dssp HGGGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCS----EEEECGGG
T ss_pred CCCCEEE-EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCc----eehhhhhh
Confidence 123444 55566 55566554 6888999999999999999999999987 4432222222221222 45799999
Q ss_pred CCccceeEEEEeeccccccCCchhHHHHHHH---HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 289 GFTGVRLGWTVVPEELRYSNGYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 289 ~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
+ +|+|+||++++++++ +.+... ......+.+++++.++.++++... +++++.++++++++.+.|
T Consensus 271 ~-~G~~iG~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L 337 (429)
T 3k28_A 271 G-GGLPVGAYGGKAEIM--------RQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGL 337 (429)
T ss_dssp G-TTSCCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHH
T ss_pred c-CCCCeEEEEEcHHHH--------hhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 8 799999999998774 222211 122334578999999999987433 456677777777777777
Q ss_pred HhC----CCeeeCCCCceEEEEEcCCCC--------------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCH
Q 013521 366 QSL----GLKVNGGKNAPYVWVQFPGSS--------------SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHR 427 (441)
Q Consensus 366 ~~~----g~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~ 427 (441)
++. +.....+..|.++++.+.... ..++...+++ +||.+.|+. .+.+|+++..++
T Consensus 338 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~r~~~~~t~ 410 (429)
T 3k28_A 338 RKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE-QGVFLPPSQ------FEGLFLSTVHSD 410 (429)
T ss_dssp HHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSST------TSCBCCCTTCCH
T ss_pred HHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHH-CCeEEecCC------CCCEEEECCCCH
Confidence 653 322222245778888874211 1456666665 599999863 356899888899
Q ss_pred HHHHHHHHHHHhhC
Q 013521 428 EYISEACRRLKNFL 441 (441)
Q Consensus 428 ~~~~~~l~~l~~~l 441 (441)
+++++++++|++++
T Consensus 411 e~i~~~l~~l~~~l 424 (429)
T 3k28_A 411 ADIEATIAAAEIAM 424 (429)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=228.72 Aligned_cols=327 Identities=15% Similarity=0.134 Sum_probs=210.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHh-hccCC-CCCCCCCCCcCcHHHH----HHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAF-ALSTV-KGYKGYGAEQGNMALR----TAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~-~~~~~-~~~~~Y~~~~g~~~lr----~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.+++++.+.+ .|+.+.+++.+.+. .+... .....|.......+++ +.+++++ +.+++.|++++| ++
T Consensus 25 ~~~~~~~~~~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~----g~~~~~i~~~sG-t~ 96 (405)
T 2vi8_A 25 KIELIASENF---VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF----GAEHANVQPHSG-AQ 96 (405)
T ss_dssp SEECCTTCCC---CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH----TCSEEECCCSSH-HH
T ss_pred ceeeccCccc---CCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh----CCCceEEEecCc-HH
Confidence 4666654433 38899999988774 21100 0001122112334555 4666654 777666667777 88
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHh-H--HHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C-CCcc
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYID-T--SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T-SRTD 216 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~-~--~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~-~~~~ 216 (441)
++.+ +..++++||.|+++.|+|+++.. . ....|. + .+++.++++++ ++..+++. . .+++
T Consensus 97 a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~-~---------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~ 165 (405)
T 2vi8_A 97 ANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGV-Q---------YNFVAYGVDPE-THVIDYDDVREKARLHRPK 165 (405)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHH-H---------SEEEEECBCTT-TCSBCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCCCEEEEecccccchhcccchhhhccc-e---------eEEEecccccc-cCCcCHHHHHHHHHhcCCe
Confidence 8887 67778999999999999988753 1 123331 0 25666766432 23334322 1 2678
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc-CCCCCcccccCCCcceeEEEecCCcccC-Cccce
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT-DPSPRSIYEIPGAREVAIEISSFSKFAG-FTGVR 294 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~-~~~~~~~~~~~~~~~~~i~i~S~SK~~~-~~G~r 294 (441)
+|++ +|+|+ |...+ +++|.++|++||+++|+||+|+.... .+... ..+. ...+++.|+||+++ .+|
T Consensus 166 ~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~--~~~~---~~di~~~s~sK~~~g~~g-- 233 (405)
T 2vi8_A 166 LIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHP--NPVP---YAHFVTTTTHKTLRGPRG-- 233 (405)
T ss_dssp EEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC--CSTT---TCSEEEEESSSTTCCCSC--
T ss_pred EEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEccccccccccCcCC--Cccc---cCCEEEEeccccCCCCCC--
Confidence 8776 55553 45555 88999999999999999999984322 22111 1121 12388999999997 455
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcCCC-cHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGA-SNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN 373 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 373 (441)
||+++++++ .+.+.........+. +.....++.+++......++++++++++++++++.+.|+++|+++.
T Consensus 234 -G~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 304 (405)
T 2vi8_A 234 -GMILCQEQF--------AKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLV 304 (405)
T ss_dssp -EEEEECHHH--------HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred -eEEEEcHHH--------HHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEe
Confidence 999998776 344544332222223 3443333345554211246788899999999999999998888887
Q ss_pred CC-CCceEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCC----cCCCCCCeEEEEeec------CHHHHHHHHHHHHhh
Q 013521 374 GG-KNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSG----FGPGGNEHIRVSAFG------HREYISEACRRLKNF 440 (441)
Q Consensus 374 ~~-~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~----f~~~~~~~iRls~~~------~~~~~~~~l~~l~~~ 440 (441)
.+ ..++++|+.++ +.+..++.+.| .++||.+.||.. |++..++++|+++.. +++++++++++|+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 383 (405)
T 2vi8_A 305 SGGTDNHLLLVDLRPQQLTGKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLV 383 (405)
T ss_dssp GGSCSSSEEEEECGGGTCCHHHHHHHH-HHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEEccCCCCCHHHHHHHH-HHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHH
Confidence 54 36889999997 33455666555 556999999863 333346789999853 799999999999875
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=237.15 Aligned_cols=336 Identities=13% Similarity=0.127 Sum_probs=212.0
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..+. .++. .++.+.+++.+.+.+.. ......| ..++++++++.+.+.++.++++|++|+|++++
T Consensus 49 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~~~~~~-----~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea 122 (449)
T 3a8u_X 49 GRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD-YSPGFQY-----GHPLSFQLAEKITDLTPGNLNHVFFTDSGSEC 122 (449)
T ss_dssp CCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS-CCCSSSC-----CCHHHHHHHHHHHTTSSTTEEEEEEESSHHHH
T ss_pred CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC-Ccccccc-----CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHH
Confidence 34678886554 2232 37899999999886532 0011123 33445555555554456788999999999999
Q ss_pred HHH-HHHhcC--------CCCEEEEeCCCchhhHh-HHHHhcccc---ccccccCccceeEEeecCC--CCC---cc---
Q 013521 148 ISR-LQMLLG--------SNVTVAVQDPSFPAYID-TSVIVGQAG---KFLKETGKYRNIVYMNCRP--ENN---FF--- 206 (441)
Q Consensus 148 l~~-l~~l~~--------~gd~Vlv~~p~y~~~~~-~~~~~g~~~---~~~~~~~~~~~v~~v~~~~--~~~---~~--- 206 (441)
+.+ +..+.. +||.|++.+|+|++... .....|... .+.+. ...+..++... ..+ ++
T Consensus 123 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~d~~~ 199 (449)
T 3a8u_X 123 ALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQP---MQDVDHLPHTLLASNAYSRGMPKE 199 (449)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCC---SCSEEEECCCCCGGGTTCSSSCSS
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCC---CCCCeEecCCccccCccccCChHH
Confidence 997 444432 67999999999998644 444433210 00000 01234444321 111 11
Q ss_pred -----C-CCCC--C----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccC
Q 013521 207 -----P-DLST--T----SRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIP 272 (441)
Q Consensus 207 -----~-~~~~--~----~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~ 272 (441)
+ ++++ . +++++ ++++| +||||. ..|.+++++|.++|++||+++|+||+|..|...+....+....
T Consensus 200 ~~~~~~~~le~~l~~~~~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~ 278 (449)
T 3a8u_X 200 GGIALADELLKLIELHDASNIAA-VFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFG 278 (449)
T ss_dssp SHHHHHHHHHHHHHHHCGGGEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCEEE-EEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcC
Confidence 1 1111 1 24444 55677 578997 5679999999999999999999999998775443222222222
Q ss_pred CCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH---------HhhhcCCCcHHHHHHHHHhcCCC
Q 013521 273 GAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI---------VCTCFNGASNIVQAGGLACLSPD 342 (441)
Q Consensus 273 ~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~a~~~~l~~~ 342 (441)
-.++ + .||||.++ +| +|+||+++++++ .+.+... ......+.+++++.++.++++..
T Consensus 279 ~~~d--i--~s~sK~l~-~G~~~~G~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~ 345 (449)
T 3a8u_X 279 VTPD--L--MCIAKQVT-NGAIPMGAVIASTEI--------YQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL 345 (449)
T ss_dssp CCCS--E--EEECGGGG-TTSSCCEEEEEEHHH--------HHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred CCCC--E--EEEccccc-CCCCceEEEEECHHH--------HHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH
Confidence 1233 2 28999998 68 999999998876 3444432 11123346788888888777521
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCC-Cee--eCCCCceEEEEEcCCCC------hHHHHHHHHHhcCeEEeCCCCcCC
Q 013521 343 GFQALRTVIDYYKENAKIIVDAFQSLG-LKV--NGGKNAPYVWVQFPGSS------SWDVFAEILEKTHILTIPGSGFGP 413 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~--~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gi~v~pg~~f~~ 413 (441)
. + +.+.++++++++++.+.|++++ +.. ..+..|+++|++++... ..++...++++ ||.+.|+
T Consensus 346 ~-~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~----- 416 (449)
T 3a8u_X 346 Q-K--ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKA-GFYVRFG----- 416 (449)
T ss_dssp H-H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHH-TEECEEE-----
T ss_pred H-h--cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHC-CcEEecC-----
Confidence 1 1 2456777788888888887642 221 11236789999997421 12577777765 9999986
Q ss_pred CCCCeEEEE--eecCHHHHHHHHHHHHhh
Q 013521 414 GGNEHIRVS--AFGHREYISEACRRLKNF 440 (441)
Q Consensus 414 ~~~~~iRls--~~~~~~~~~~~l~~l~~~ 440 (441)
+ +++||+ +..+++++++++++|+++
T Consensus 417 -g-~~iRis~~~~~t~~~i~~~l~~l~~~ 443 (449)
T 3a8u_X 417 -G-DTLQFGPTFNSKPQDLDRLFDAVGEV 443 (449)
T ss_dssp -T-TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred -C-CEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 2 689999 466999999999999875
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-26 Score=221.75 Aligned_cols=315 Identities=15% Similarity=0.146 Sum_probs=212.0
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC-CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG-AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
.++++++.+.|++ ++.+.+++.+.+.. . .|. +..+..++|+++|+++ +.+ ++++++|+++++.+
T Consensus 22 ~~~~~l~~~~p~~--~~~~~~a~~~~~~~----~---~~~~~~~~~~~l~~~la~~~----~~~--~~i~~~~gt~al~~ 86 (391)
T 3dr4_A 22 SDLPRISVAAPRL--DGNERDYVLECMDT----T---WISSVGRFIVEFEKAFADYC----GVK--HAIACNNGTTALHL 86 (391)
T ss_dssp ------CCCCCCC--CSSHHHHHHHHHHH----T---CCSSCSHHHHHHHHHHHHHH----TCS--EEEEESSHHHHHHH
T ss_pred CCCceeccCCCCC--CHHHHHHHHHHHHc----C---CccCCChHHHHHHHHHHHHh----CCC--cEEEeCCHHHHHHH
Confidence 3578999998854 47788888887764 1 344 5779999999999997 443 78888888999987
Q ss_pred -HHHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEcCC
Q 013521 151 -LQML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFCSP 223 (441)
Q Consensus 151 -l~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~~p 223 (441)
+..+ +++||+|+++.|+|+++...+...| .+++.++++++ ++..+++ + .+++++|+ |
T Consensus 87 ~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~---~ 150 (391)
T 3dr4_A 87 ALVAMGIGPGDEVIVPSLTYIASANSVTYCG------------ATPVLVDNDPR-TFNLDAAKLEALITPRTKAIM---P 150 (391)
T ss_dssp HHHHHTCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCSBCGGGSGGGCCTTEEEEC---C
T ss_pred HHHHcCCCCcCEEEECCCchHHHHHHHHHCC------------CEEEEEecCcc-ccCcCHHHHHHhcCCCceEEE---E
Confidence 6777 8999999999999999999999888 58899998753 2333322 2 25677766 5
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC--cccCCccceeEEEEee
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVP 301 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~ 301 (441)
+||||...+ +++|+++|++||+++|+|++|+...... ......+ .+ +.+.||| |.++ |.+.||++++
T Consensus 151 ~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~~~---~d--i~~~S~s~~K~l~--~g~gg~~~~~ 219 (391)
T 3dr4_A 151 VHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYR-GKKSGSL---GD--CATFSFFGNAIIT--TGEGGMITTN 219 (391)
T ss_dssp BCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEET-TEETTSS---SS--EEEEECBTTSSSC--CBSCEEEEES
T ss_pred ECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceEC-Ceeeccc---CC--EEEEECCCCCcCC--cCCeEEEEEC
Confidence 789999988 8889999999999999999998533211 1111112 23 6677766 7774 4678999988
Q ss_pred ccccccCCchhHHHHHHHHhhhc--------------CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCF--------------NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 367 (441)
++.+ .+.+........ ...+.+. ++..... ...+++..++.+++.+.+.+.|++
T Consensus 220 ~~~~-------~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~--aa~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 287 (391)
T 3dr4_A 220 DDDL-------AAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQ--AAIGLAQ---LERVDEHLAARERVVGWYEQKLAR 287 (391)
T ss_dssp CHHH-------HHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHH--HHHHHHH---HHTHHHHHHHHHHHHHHHHHHHGG
T ss_pred CHHH-------HHHHHHHHhcCCCCCCcccccccccccCCCHHH--HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7643 344443332211 1122222 2222222 133466777778888889999988
Q ss_pred CCCeeeCC---C---Cc-eEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCC---cCCC---------------CCCeE
Q 013521 368 LGLKVNGG---K---NA-PYVWVQFPG---SSSWDVFAEILEKTHILTIPGSG---FGPG---------------GNEHI 419 (441)
Q Consensus 368 ~g~~~~~~---~---~~-~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~---f~~~---------------~~~~i 419 (441)
.|+.+..+ . .+ ..+++.++. .+..++.+.|.+ +||.+++|.. ..+. ....+
T Consensus 288 ~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~-~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l 366 (391)
T 3dr4_A 288 LGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDA-LGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGL 366 (391)
T ss_dssp GTTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHH-TTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEE
T ss_pred CCccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHH-CCCceeecCCccccChhhhhcCcCCChHHHHHHhCeE
Confidence 77776543 1 22 235777763 345667777665 4999998751 1110 13579
Q ss_pred EEEee--cCHHHHHHHHHHHHhhC
Q 013521 420 RVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 420 Rls~~--~~~~~~~~~l~~l~~~l 441 (441)
||++. .++++++++++.|++++
T Consensus 367 rl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 367 NLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp EECCCTTCCHHHHHHHHHHHHTTC
T ss_pred EccCCCCCCHHHHHHHHHHHHHHh
Confidence 99973 48999999999999875
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-27 Score=229.39 Aligned_cols=329 Identities=17% Similarity=0.129 Sum_probs=200.2
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhh-ccCC-CCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFA-LSTV-KGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~-~~~~-~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.+.+..+.+. .++.+.+++.+.+.+ +... .....|........+.+...+++.+.+++++++|++++| ++++.+
T Consensus 32 ~~~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sG-s~a~~~a 108 (420)
T 3gbx_A 32 HIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSG-SQANFAV 108 (420)
T ss_dssp SEECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHH
T ss_pred ceeeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCc-HHHHHHH
Confidence 4566555432 588999999987743 2100 111122222233344443334444445788888888888 567776
Q ss_pred HHHhcCCCCEEEEeCCCchhhHh---HHHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEEEc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYID---TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIFFC 221 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~i~ 221 (441)
+..++++||+|+++.|+|+++.. .....|.. ...+.++.+.+ +..|++. ..++++|+++
T Consensus 109 ~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~v~~~ 176 (420)
T 3gbx_A 109 YTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKL----------YNIVPYGIDES--GKIDYDEMAKLAKEHKPKMIIGG 176 (420)
T ss_dssp HHHHCCTTCEEEEEEEC------------CHHHH----------SEEEEEEECTT--CSCCHHHHHHHHHHHCCSEEEEC
T ss_pred HHHhcCCCCEEEecchhhcceeccchhhhhcccc----------eeEEeccCCcc--CCcCHHHHHHHHHhcCCeEEEEe
Confidence 67888999999999999987431 11122210 24445555532 2333322 1368999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
+|+||+ ..+ +++|.++|++||+++|+||+|.... ..+..... +. ..++++.|+||.++ |.+.||+++
T Consensus 177 ~~~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~---~~di~~~s~sK~~~--g~~gg~~~~ 244 (420)
T 3gbx_A 177 FSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP---HAHVVTTTTHKTLA--GPRGGLILA 244 (420)
T ss_dssp CTTCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT---TSSEEEEESSGGGC--SCSCEEEEE
T ss_pred cCccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc---cCCEEEeecccCCC--CCCceEEEE
Confidence 999975 556 8899999999999999999986432 22221111 11 23489999999985 566699999
Q ss_pred ec---cccccCCchhHHHHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-
Q 013521 301 PE---ELRYSNGYPVIKDFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG- 375 (441)
Q Consensus 301 ~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~- 375 (441)
++ .+ .+.+....... ..+++...+.++..++......++++++++++++++.+.+.|.+.|+++..+
T Consensus 245 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 316 (420)
T 3gbx_A 245 KGGDEEL--------YKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGG 316 (420)
T ss_dssp SSCCHHH--------HHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS
T ss_pred cCCcHHH--------HHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCC
Confidence 87 33 33343322221 1223344333333333222224568889999999999999999888887653
Q ss_pred CCceEEEEEcCC-CChHHHHHHHHHhcCeEEeC-------CCCcCCCCCCeEEEEee------cCHHHHHHHHHHHHhh
Q 013521 376 KNAPYVWVQFPG-SSSWDVFAEILEKTHILTIP-------GSGFGPGGNEHIRVSAF------GHREYISEACRRLKNF 440 (441)
Q Consensus 376 ~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~p-------g~~f~~~~~~~iRls~~------~~~~~~~~~l~~l~~~ 440 (441)
..++++|+.++. ..+.+.+..+++++||.+.| +..|+ +..+||++. .++++++++++.|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~---~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~ 392 (420)
T 3gbx_A 317 TENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV---TSGIRIGSPAVTRRGFKEAEVKELAGWMCDV 392 (420)
T ss_dssp CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTT---CSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCC---CcceEEecchhcccCCCHHHHHHHHHHHHHH
Confidence 568899999862 23344555556677999998 33332 356999963 2478899999998875
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-26 Score=222.11 Aligned_cols=280 Identities=14% Similarity=0.170 Sum_probs=195.6
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccccc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLK 186 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~ 186 (441)
+..+..++++++++++ +.+ +.|++++| ++++.+ +..++++||.|+++.|+|++....+ ...|
T Consensus 50 ~~~~~~~l~~~la~~~----~~~-~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g------- 116 (386)
T 1cs1_A 50 GNPTRDVVQRALAELE----GGA-GAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC------- 116 (386)
T ss_dssp CCHHHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTS-------
T ss_pred CCccHHHHHHHHHHHh----CCC-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcC-------
Confidence 4567899999999997 544 77888777 899987 5667899999999999999865543 3334
Q ss_pred ccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC
Q 013521 187 ETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS 264 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~ 264 (441)
.+++.++.++. .++++ .+++++|++++|+||||.+++ +++|.++|++||+++|+||+|..+....
T Consensus 117 -----~~~~~~~~~d~----~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~- 183 (386)
T 1cs1_A 117 -----YRVLFVDQGDE----QALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN- 183 (386)
T ss_dssp -----CEEEEECTTCH----HHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred -----CEEEEeCCCCH----HHHHHhhccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 47777776411 11111 257899999999999999998 8899999999999999999999765431
Q ss_pred CCcccccCCCcceeEEEecCCcccCCcccee-EEEEeec-cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPE-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD 342 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 342 (441)
++ . .++++++.|+||.++.+|.|+ ||+++++ ++ .+.+...........+++.+.++.+.++
T Consensus 184 --~~-~----~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l--------~~~l~~~~~~~~~~~~~~~~~~~~~~l~-- 246 (386)
T 1cs1_A 184 --PL-A----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDV--------VTELAWWANNIGVTGGAFDSYLLLRGLR-- 246 (386)
T ss_dssp --GG-G----GTCSEEEEETTTTTTCSSCCCCEEEEESSHHH--------HHHHHHHHHHHTCBCCHHHHHHHHHHHT--
T ss_pred --cc-c----cCceEEEEcCcccccCCCCceeEEEEeCcHHH--------HHHHHHHHHhcCCCCCHHHHHHHHhccc--
Confidence 22 2 245699999999998899997 9999987 55 3555544443334467777766655554
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee--C---------------CCCceEEEEEcCCCChHHHHHHHHHhcCeE
Q 013521 343 GFQALRTVIDYYKENAKIIVDAFQSL-GLKVN--G---------------GKNAPYVWVQFPGSSSWDVFAEILEKTHIL 404 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 404 (441)
++....+...++++.+.+.|+++ .+... + ...+.++.+.+++. . +.+...++++||.
T Consensus 247 ---~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~~~gi~ 321 (386)
T 1cs1_A 247 ---TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-E-QTLRRFLGGLSLF 321 (386)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-H-HHHHHHHHTCSSS
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-H-HHHHHHHHhCCcc
Confidence 23455666777888888888775 22211 1 11366777788643 3 3445556677998
Q ss_pred EeCCCCcC-------------------------CCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 405 TIPGSGFG-------------------------PGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 405 v~pg~~f~-------------------------~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
+.+.+ |+ ...++++||++.. ++++++.+.+.|+++
T Consensus 322 ~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 322 TLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp EEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 87421 11 1125899999844 456677777777654
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=234.85 Aligned_cols=337 Identities=12% Similarity=0.056 Sum_probs=205.1
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+++++|++.|.+ ++. .++.+.+++.+.+.+. ....| + .++++++++++.+.++ ++++|++|+|++++
T Consensus 51 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-~----~~~~~~la~~l~~~~~-~~~~v~~~~ggsea 120 (427)
T 3fq8_A 51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKG----TSFGA-P----CALENVLAEMVNDAVP-SIEMVRFVNSGTEA 120 (427)
T ss_dssp SCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC----SCCSS-C----CHHHHHHHHHHHHHST-TCSEEEEESSHHHH
T ss_pred CCEEEECCCchhhhccCCCCHHHHHHHHHHHHhC----CCcCC-C----CHHHHHHHHHHHHhCC-CCCEEEEeCCHHHH
Confidence 467899998853 332 5899999999988642 11223 2 3455556655554345 68999999999999
Q ss_pred HHHHH---HhcCCCCEEEEeCCCchhhHhHHHHhcccccc----ccccC----ccceeEEeecCCCCCccCCCCC-CCCc
Q 013521 148 ISRLQ---MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKF----LKETG----KYRNIVYMNCRPENNFFPDLST-TSRT 215 (441)
Q Consensus 148 l~~l~---~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----~~~~~----~~~~v~~v~~~~~~~~~~~~~~-~~~~ 215 (441)
+..+. .....++.|++.+|+|++....+...+..+.. ..... ....+..++.++-+.+...+.. ..++
T Consensus 121 ~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 200 (427)
T 3fq8_A 121 CMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEI 200 (427)
T ss_dssp HHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTE
T ss_pred HHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCE
Confidence 99733 22334578999999998865443333211110 00000 0012344443210000000111 1256
Q ss_pred cEEEEcCCCCccccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce
Q 013521 216 DIIFFCSPNNPTGHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
++|+++.++|++|.+.+ ++.+++|.++|++||+++|+||+|.+| ..+.........-.++ +.||||.++ +|+|
T Consensus 201 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~-~G~~ 274 (427)
T 3fq8_A 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPD----LTTLGKIIG-GGLP 274 (427)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCS----EEEECGGGG-TTSS
T ss_pred EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCC----hhhhhhhhh-CCcc
Confidence 66665555777887765 666999999999999999999999987 4432221212211223 468999998 8999
Q ss_pred eEEEEeeccccccCCchhHHHHHHH---HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH----h
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ----S 367 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~ 367 (441)
+||++++++++ +.+... ......+.+++++.++.++++.... +.+.++++++.+.+.+.|. +
T Consensus 275 ~G~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 343 (427)
T 3fq8_A 275 VGAYGGKREIM--------QLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQE 343 (427)
T ss_dssp CEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcHHHH--------HhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988774 222211 1122334688888888888752111 2233444444444444444 3
Q ss_pred CCCeeeCCCCceEEEEEcCCC--C------------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHH
Q 013521 368 LGLKVNGGKNAPYVWVQFPGS--S------------SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEA 433 (441)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~ 433 (441)
+++.......|.++|+.++.. . ..++...+++ +||.+.|+.. ..+|+++..++++++++
T Consensus 344 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~------~r~~~~~~~t~e~i~~~ 416 (427)
T 3fq8_A 344 TGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQF------EAGFTSLAHTEEDIDAT 416 (427)
T ss_dssp TTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT------SCEECCTTCCHHHHHHH
T ss_pred CCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCCC------CCEEeeCcCCHHHHHHH
Confidence 444333334678899998631 1 2356666665 5999998752 35777777799999999
Q ss_pred HHHHHhhC
Q 013521 434 CRRLKNFL 441 (441)
Q Consensus 434 l~~l~~~l 441 (441)
+++|++++
T Consensus 417 l~~l~~~l 424 (427)
T 3fq8_A 417 LAAARTVM 424 (427)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998763
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=229.07 Aligned_cols=280 Identities=16% Similarity=0.169 Sum_probs=188.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHH----hcccccccccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVI----VGQAGKFLKET 188 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~ 188 (441)
+...+|++.+++++ + .+++++++|+++++.+ +..++++||.|+++.|+|+++...+.. .|
T Consensus 81 p~~~~l~~~la~~~----g--~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g--------- 145 (414)
T 3ndn_A 81 PTVSVFEERLRLIE----G--APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWG--------- 145 (414)
T ss_dssp HHHHHHHHHHHHHH----T--CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTT---------
T ss_pred hHHHHHHHHHHHHH----C--CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcC---------
Confidence 34556666666664 4 3678888999999987 677889999999999999998776644 66
Q ss_pred CccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc
Q 013521 189 GKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI 268 (441)
Q Consensus 189 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~ 268 (441)
.+++.++.++-+.+...+ .+++++|++++|+||||.+.+ +++|+++|++||+++|+|++|...... .++
T Consensus 146 ---~~~~~v~~~d~~~l~~ai--~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~---~~~ 214 (414)
T 3ndn_A 146 ---VQTVFVDGDDLSQWERAL--SVPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ---QGF 214 (414)
T ss_dssp ---CEEEEECTTCHHHHHHHT--SSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC---CCG
T ss_pred ---cEEEEeCCCCHHHHHHhc--CCCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC---Cch
Confidence 588888775211111001 357899999999999999988 889999999999999999999843221 112
Q ss_pred cccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHH
Q 013521 269 YEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQAL 347 (441)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 347 (441)
.. +.++++.|+||.+|.+| +++||++++++.+ .+.+...........++....++...+ +.+
T Consensus 215 -~~----g~div~~S~sK~l~~~G~~~~G~vv~~~~~~-------~~~l~~~~~~~g~~~~~~~a~~~~~~l-----~~l 277 (414)
T 3ndn_A 215 -PL----GVDVVVYSGTKHIDGQGRVLGGAILGDREYI-------DGPVQKLMRHTGPAMSAFNAWVLLKGL-----ETL 277 (414)
T ss_dssp -GG----TCSEEEEETTTTTTCSSCCCCEEEEECHHHH-------TTHHHHHHHHHCCCCCHHHHHHHHHHG-----GGH
T ss_pred -hc----CCCeEeccCCccccCCCCceEEEEEECHHHH-------HHHHHHHHHHcCCCCCHHHHHHHHHHH-----HHH
Confidence 12 23588999999999778 8999999988774 123443333333444555443333333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCe-eeCCC----------------CceEEEEEcCCC-----C-hHHHHHHHHHhcCe
Q 013521 348 RTVIDYYKENAKIIVDAFQSL-GLK-VNGGK----------------NAPYVWVQFPGS-----S-SWDVFAEILEKTHI 403 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~-----~-~~~~~~~ll~~~gi 403 (441)
..+.++..++++.+.+.|+++ ++. +..|. .|..+|+.+++. . ...++.. ++..++
T Consensus 278 ~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~-l~~~~~ 356 (414)
T 3ndn_A 278 AIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDK-MRLIDI 356 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHH-CSSSEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHh-CccceE
Confidence 566677788889999999876 443 22111 467899999752 1 2223333 344577
Q ss_pred EEeCCCCcCC---------------------CCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 404 LTIPGSGFGP---------------------GGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 404 ~v~pg~~f~~---------------------~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
.+.+|..+.. ..+++||||++. ++.+++++.|.+
T Consensus 357 ~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~ 411 (414)
T 3ndn_A 357 SNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDR 411 (414)
T ss_dssp CSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHH
T ss_pred cCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHH
Confidence 8888876531 236899999864 333444444444
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=234.86 Aligned_cols=337 Identities=9% Similarity=0.024 Sum_probs=217.9
Q ss_pred CC--CeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH
Q 013521 71 DA--RLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~--~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~ 145 (441)
++ +++|+..|. ..+. .+|.+.+++.+.+.+... ...++.+.....+|++.++++ ++...++|++|+|++
T Consensus 72 G~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~~L~e~la~~----~~~~~~~v~~~~sGs 145 (457)
T 3tfu_A 72 GQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNH--VMFGGLTHEPAARLAKLLVDI----TPAGLDTVFFSDSGS 145 (457)
T ss_dssp TEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSC--CCSSSEECHHHHHHHHHHHHH----SSTTEEEEEEESSHH
T ss_pred CCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccC--ccccccCCHHHHHHHHHHHHh----CCCCcCEEEEeCcHH
Confidence 56 789988762 3332 689999999999876421 111111333445555555555 466778999999999
Q ss_pred HHHHH-HHHhcC-------CC-CEEEEeCCCchhhHhHHHHhcc-ccc----cccccCccceeEEeecCCCCC--cc-CC
Q 013521 146 SDISR-LQMLLG-------SN-VTVAVQDPSFPAYIDTSVIVGQ-AGK----FLKETGKYRNIVYMNCRPENN--FF-PD 208 (441)
Q Consensus 146 ~al~~-l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~-~~~----~~~~~~~~~~v~~v~~~~~~~--~~-~~ 208 (441)
+++.. +..+.. +| +.|++.+++|++....+...+. ... +.+.. ..+..++...... .+ .+
T Consensus 146 eA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~d~~~ 222 (457)
T 3tfu_A 146 VSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVL---AAQVFAPQVPRDYDPAYSAA 222 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------C---CCCEEECCCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCC---CCceEecCCCcccCHHHHHH
Confidence 99997 444433 55 5899999999987655554421 100 00000 1333444322110 01 11
Q ss_pred CCC--C---CCccEEEEcC-CCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEE
Q 013521 209 LST--T---SRTDIIFFCS-PNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEI 281 (441)
Q Consensus 209 ~~~--~---~~~~~v~i~~-p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i 281 (441)
+++ . +++++|++.. ++||+|.++ +++.+++|.++|++||+++|+||+|.+|...+...........++ +
T Consensus 223 le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pd--i-- 298 (457)
T 3tfu_A 223 FEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPD--I-- 298 (457)
T ss_dssp HHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS--E--
T ss_pred HHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCce--E--
Confidence 211 1 4567777666 799999876 788899999999999999999999998765543322333322233 2
Q ss_pred ecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH-----HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI-----VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYK 355 (441)
Q Consensus 282 ~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 355 (441)
.||||.++ .| +|+||+++++++ .+.+... ......+.+++++.++.+.++.... +.+.++++
T Consensus 299 it~sK~l~-gG~~~lG~v~~~~~i--------~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~---~~~~~~~~ 366 (457)
T 3tfu_A 299 MCVGKALT-GGYLSLAATLCTADV--------AHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG---QDWRTRIT 366 (457)
T ss_dssp EEECGGGG-TTSSCCEEEEEEHHH--------HHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT---SCHHHHHH
T ss_pred EEEChhhh-CCCcceEEEEEcHHH--------HHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh---hHHHHHHH
Confidence 28999987 56 799999999887 3444311 1223445788999888888762111 23455666
Q ss_pred HHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHH
Q 013521 356 ENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHRE 428 (441)
Q Consensus 356 ~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~ 428 (441)
++.+++.+.|+++ ++.... ..|++++++++. .+..++...++++ ||.+.|. .+++||+. ..+++
T Consensus 367 ~~~~~l~~~L~~l~~~~~v~~vr-~~G~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~-------~~~lRi~p~~~~t~e 437 (457)
T 3tfu_A 367 ELAAGLTAGLDTARALPAVTDVR-VCGAIGVIECDRPVDLAVATPAALDR-GVWLRPF-------RNLVYAMPPYICTPA 437 (457)
T ss_dssp HHHHHHHHHHGGGGGSTTEEEEE-ECSSCEEEEESSCCCHHHHHHHHHHT-TEECCCB-------TTEEEECCCTTCCHH
T ss_pred HHHHHHHHHHHHHhcCCCeeeee-cCCeEEEEEECCcccHHHHHHHHHHC-CeEEEec-------CCEEEEECCCCCCHH
Confidence 6777777777654 333333 367889999873 3456777777765 9999873 25899984 55899
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
++++++++|++++
T Consensus 438 ei~~~l~~L~~~l 450 (457)
T 3tfu_A 438 EITQITSAMVEVA 450 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=219.00 Aligned_cols=277 Identities=16% Similarity=0.130 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH----HhccccccccccCccc
Q 013521 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAGKFLKETGKYR 192 (441)
Q Consensus 118 ~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~ 192 (441)
++++++|+++ +.+ +.|++++| ++++.+ +..++++||+|+++.|+|+++...+. ..| .
T Consensus 2 ~l~~~la~~~----g~~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g------------~ 63 (331)
T 1pff_A 2 ALEGKIAKLE----HAE-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG------------V 63 (331)
T ss_dssp HHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT------------C
T ss_pred hHHHHHHHHh----CCC-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcC------------C
Confidence 5899999997 655 67777777 789987 56678999999999999999876653 345 4
Q ss_pred eeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH-cCcEEEEcccccccccCCCCCccccc
Q 013521 193 NIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA-NGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 193 ~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~-~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
+++.++..+-+.+...+ .+++++|++++|+||||.+++ +++|.++|++ ||+++|+|++|..+... .++ .
T Consensus 64 ~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~---~~~-~- 133 (331)
T 1pff_A 64 EVDFIDMAVPGNIEKHL--KPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT---NPL-D- 133 (331)
T ss_dssp EEEEECTTSTTHHHHTC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC---CGG-G-
T ss_pred EEEEeCCCCHHHHHHhh--cCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC---Chh-h-
Confidence 77777763211111111 257899999999999999998 8999999999 99999999999865442 122 2
Q ss_pred CCCcceeEEEecCCcccCCccce-eEEEEeec-cccccCCchhHHHHHHHHhh-hcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 272 PGAREVAIEISSFSKFAGFTGVR-LGWTVVPE-ELRYSNGYPVIKDFNRIVCT-CFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G~r-~G~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
.++++++.|+||.++.+|.| +||+++++ ++ .+.+...... ...+.+++.+.++.+.++ .+.
T Consensus 134 ---~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~ 197 (331)
T 1pff_A 134 ---LGVDIVVHSATKYINGHTDVVAGLVCSRADII--------AKVKSQGIKDITGAIISPHDAWLITRGTL-----TLD 197 (331)
T ss_dssp ---GTCSEEEEETTTTTSSSSSCCCEEEEECHHHH--------HHHHHTCCCCCCCCCCCHHHHHHHHHHHH-----HHH
T ss_pred ---cCCcEEEEECccccCCCCCceEEEEEeCcHHH--------HHHHHHHHHhhcCCCCCHHHHHHHHcCcc-----hHH
Confidence 24569999999999989999 89999987 65 3455443333 233466777665554443 223
Q ss_pred HHHHHHHHHHHHHHHHHHhC---------------CCeeeC---CCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCC
Q 013521 349 TVIDYYKENAKIIVDAFQSL---------------GLKVNG---GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSG 410 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~---------------g~~~~~---~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~ 410 (441)
...+...++.+.+.+.|++. ++++.. ...+.++++.++ +. +.+..++++.||.+++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~l~~~gI~~~~~s~ 274 (331)
T 1pff_A 198 MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--GL-EKAKKVLDNCHVVSLAVSL 274 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--SH-HHHHHHHHTCSSSEECSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CH-HHHHHHHHhCCCceeccCC
Confidence 34444555666666655543 111111 114667888886 33 3455566677998766531
Q ss_pred ---------cC---------------CCCCCeEEEEeec--CHHHHHHHHHHHHhhC
Q 013521 411 ---------FG---------------PGGNEHIRVSAFG--HREYISEACRRLKNFL 441 (441)
Q Consensus 411 ---------f~---------------~~~~~~iRls~~~--~~~~~~~~l~~l~~~l 441 (441)
+. ...++++|+++.. ++++++.+++.|++++
T Consensus 275 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~~ 331 (331)
T 1pff_A 275 GGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLVL 331 (331)
T ss_dssp CSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC-
T ss_pred CCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 10 1125899999743 6789999999998764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=234.45 Aligned_cols=332 Identities=14% Similarity=0.088 Sum_probs=207.8
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++||..|. .++. .++.+.+++.+.+... ....| ..++++++++++.+.++ .+++|++|+|++++
T Consensus 51 g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea 120 (424)
T 2e7u_A 51 GNRYLDYVMSWGPLILGHAHPKVLARVRETLERG----LTFGA-----PSPLEVALAKKVKRAYP-FVDLVRFVNSGTEA 120 (424)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC----SCCSS-----CCHHHHHHHHHHHHHCT-TCCEEEEESSHHHH
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhC----CCCCC-----CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHH
Confidence 45689998775 2232 6899999999988751 11223 23344455555444344 67899999999999
Q ss_pred HHH-HHH--hcCCCCEEEEeCCCchhhHhHHHH-hccc-ccc--cc-ccCc---cceeEEeecCCCCCccCCCCC--C--
Q 013521 148 ISR-LQM--LLGSNVTVAVQDPSFPAYIDTSVI-VGQA-GKF--LK-ETGK---YRNIVYMNCRPENNFFPDLST--T-- 212 (441)
Q Consensus 148 l~~-l~~--l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~-~~~--~~-~~~~---~~~v~~v~~~~~~~~~~~~~~--~-- 212 (441)
+.. +.. .+.+++.|++.+|+|+++...+.. .|.. ..+ .. .+.. ..++..++.. + ..++++ .
T Consensus 121 ~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~---d-~~~le~~l~~~ 196 (424)
T 2e7u_A 121 TMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN---D-PEGLREVLKRR 196 (424)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTT---C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCC---C-HHHHHHHHHhC
Confidence 987 432 244457899999999986543321 1110 000 00 0000 0134444432 1 111221 1
Q ss_pred -CCccEEEEcCCCCc-cccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSPNNP-TGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p~NP-tG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
+++ ++++++|+|| ||.++ +++++++|.++ ++||+++|+||+|.+| ..+.........-.++ +.||||.++
T Consensus 197 ~~~~-~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~ 269 (424)
T 2e7u_A 197 GEEI-AAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPD----LVTLGKILG 269 (424)
T ss_dssp GGGE-EEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCS----EEEECGGGG
T ss_pred CCCE-EEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcc----hhhhhhhhh
Confidence 234 4566688655 89765 79999999999 9999999999999987 3332211112221233 339999998
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHHH---HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+|+|+||++++++++ +.+... ......+.+++++.++.++++.. +..+++.++++++++++.+.|+
T Consensus 270 -~G~~~G~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~~~~~~~~~~~~~~~l~~~L~ 338 (424)
T 2e7u_A 270 -GGLPAAAYAGRREIM--------EKVAPLGPVYQAGTLSGNPLAMAAGLATLELL--EENPGYYAYLEDLGARLEAGLK 338 (424)
T ss_dssp -TTSSCEEEEECHHHH--------TTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHH
T ss_pred -CCcceEEEEEcHHHH--------hhhcccCCcccCCCCCCCHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHH
Confidence 799999999998774 222210 11223357788888888887521 1114466777777777777776
Q ss_pred hC----CCeeeCCCCceEEEEEcCCC--------------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHH
Q 013521 367 SL----GLKVNGGKNAPYVWVQFPGS--------------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHRE 428 (441)
Q Consensus 367 ~~----g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 428 (441)
+. ++....+..|+++|++++.. ...++...++ ++||.+.|+.. ..+|+++..+++
T Consensus 339 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~------~~~~~~~~~t~~ 411 (424)
T 2e7u_A 339 EVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF------EAAFLSVAHREE 411 (424)
T ss_dssp HHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS------SCEECCTTCCHH
T ss_pred HHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC------CceEeeccCCHH
Confidence 53 55322223677999999641 1235666666 56999999742 357888777999
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
++++++++|++++
T Consensus 412 ~i~~~l~~l~~~l 424 (424)
T 2e7u_A 412 DVEKTLEALRKAL 424 (424)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999875
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-25 Score=214.97 Aligned_cols=302 Identities=14% Similarity=0.093 Sum_probs=209.1
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh---cCCCCE
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML---LGSNVT 160 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l---~~~gd~ 160 (441)
++|+.+.+++.+.+.. . .|.+.....++++++|+++ +.+ ++++|+|+++++.+ +..+ +++||+
T Consensus 10 ~~~~~v~~a~~~~~~~-----~--~~~~~~~~~~l~~~la~~~----~~~--~v~~~~ggt~al~~~~~~~~~~~~~gd~ 76 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNS-----K--QLTQGKRSLLFEEALCEFL----GVK--HALVFNSATSALLTLYRNFSEFSADRNE 76 (375)
T ss_dssp CCCHHHHHHHHHHHTS-----S--CCSSSHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHHHSSCCCTTSCE
T ss_pred CCCHHHHHHHHHHHHc-----C--cccCChHHHHHHHHHHHHh----CCC--eEEEeCCHHHHHHHHHHHhcccCCCCCE
Confidence 4678899999998753 1 1334567899999999997 544 99999999999997 6677 789999
Q ss_pred EEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccccCCCHHHHH
Q 013521 161 VAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTGHAATWQQLK 237 (441)
Q Consensus 161 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~ 237 (441)
|+++.|+|+++...+...| .+++.+++++++.++++ +++ .+++++|++++| ||.+.+ ++
T Consensus 77 Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~ 138 (375)
T 2fnu_A 77 IITTPISFVATANMLLESG------------YTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVE---VE 138 (375)
T ss_dssp EEECSSSCTHHHHHHHHTT------------CEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HH
T ss_pred EEECCCccHhHHHHHHHCC------------CEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccC---HH
Confidence 9999999999999888888 58889998765433222 222 357888888776 999998 78
Q ss_pred HHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC--cccCCccceeEEEEee--ccccccCCchhH
Q 013521 238 KLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVP--EELRYSNGYPVI 313 (441)
Q Consensus 238 ~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~--~~~~~~~~~~~~ 313 (441)
+|.++|++||+++|+|++|+.+.... ... +...+ .+.+.||| |.++ +| +|++++. +++ .
T Consensus 139 ~i~~l~~~~~~~li~D~a~~~~~~~~-~~~---~~~~~--~i~~~s~s~~K~~~-~g--~g~~~~~~~~~~--------~ 201 (375)
T 2fnu_A 139 SVQKLCKKHSLSFLSDSSHALGSEYQ-NKK---VGGFA--LASVFSFHAIKPIT-TA--EGGAVVTNDSEL--------H 201 (375)
T ss_dssp HHHHHHHHHTCEEEEECTTCTTCEET-TEE---TTSSS--SEEEEECCTTSSSC-CS--SCEEEEESCHHH--------H
T ss_pred HHHHHHHHcCCEEEEECccccCCeEC-Cee---ccccC--CeEEEeCCCCCCcc-cc--CceEEEeCCHHH--------H
Confidence 99999999999999999998543221 111 21112 37788888 9997 46 7888874 334 3
Q ss_pred HHHHHHHhhhc----------------CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCC
Q 013521 314 KDFNRIVCTCF----------------NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGK 376 (441)
Q Consensus 314 ~~~~~~~~~~~----------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 376 (441)
+.+........ ...+.+...++... .+++++..++.+++++++.+.|+++ |+.+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 276 (375)
T 2fnu_A 202 EKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQ-----LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPL 276 (375)
T ss_dssp HHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGG
T ss_pred HHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCC
Confidence 44443322111 12333333222222 2234677888899999999999987 77776541
Q ss_pred -----CceEEEEEcCC--C-ChHHHHHHHHHhcCeEEeCCCC-------cC-------C-----CCCCeEEEEee--cCH
Q 013521 377 -----NAPYVWVQFPG--S-SSWDVFAEILEKTHILTIPGSG-------FG-------P-----GGNEHIRVSAF--GHR 427 (441)
Q Consensus 377 -----~~~~~~~~~~~--~-~~~~~~~~ll~~~gi~v~pg~~-------f~-------~-----~~~~~iRls~~--~~~ 427 (441)
.++++|+.++. . +..++.+.|. ++||.+..+.. |+ . ...++|||++. .++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~ 355 (375)
T 2fnu_A 277 LKDKSSNHLYPILMHQKFFTCKKLILESLH-KRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNL 355 (375)
T ss_dssp CSSCCCCSCEEEEECGGGGGGHHHHHHHHH-HTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCH
T ss_pred CCCCcceEEEEEEeCccccchHHHHHHHHH-HCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCH
Confidence 23446788763 2 4556666665 55999983211 11 0 01268999985 389
Q ss_pred HHHHHHHHHHHhh
Q 013521 428 EYISEACRRLKNF 440 (441)
Q Consensus 428 ~~~~~~l~~l~~~ 440 (441)
+++++++++|+++
T Consensus 356 ~~i~~~~~~l~~~ 368 (375)
T 2fnu_A 356 ESVQNIAHSVLKT 368 (375)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=231.80 Aligned_cols=340 Identities=14% Similarity=0.088 Sum_probs=223.7
Q ss_pred CCCeEEeCCC--CCCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG--DTTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..| ...+. .+|.+.+++.+.+.+.. .+....+..+.++++++++.+..+.+.++|++++|+++|
T Consensus 53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~------~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 126 (476)
T 3i5t_A 53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLP------YASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTA 126 (476)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC------CCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc------CcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHH
Confidence 5678998877 33333 68999999999987632 111114566788889998887666677899999999999
Q ss_pred HHH-HHHhc--------CCCCEEEEeCCCchhhHhHHHHhccccccccc-cCccceeEEeecCC--CC-Cc---------
Q 013521 148 ISR-LQMLL--------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE-TGKYRNIVYMNCRP--EN-NF--------- 205 (441)
Q Consensus 148 l~~-l~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~v~~v~~~~--~~-~~--------- 205 (441)
+.. +..+. ..++.|++.+|+|+++...+...+....+... ......+..++... .. +.
T Consensus 127 ~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 206 (476)
T 3i5t_A 127 VDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDL 206 (476)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHH
Confidence 987 44333 33579999999999987666655432211000 00001233333211 10 00
Q ss_pred cCCCCC-----C-CCccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc-ccCCCcce
Q 013521 206 FPDLST-----T-SRTDIIFFCSPNNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY-EIPGAREV 277 (441)
Q Consensus 206 ~~~~~~-----~-~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~-~~~~~~~~ 277 (441)
..++++ . +++++|+++.++|++|. +.+++.+++|.++|++||+++|+||+|..|...+...... .+.-.+|
T Consensus 207 ~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pd- 285 (476)
T 3i5t_A 207 VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPD- 285 (476)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCS-
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcc-
Confidence 011221 1 34566666566888885 7899999999999999999999999999876655332333 2222234
Q ss_pred eEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH-------HhhhcCCCcHHHHHHHHHhcCCCcHHHHHH
Q 013521 278 AIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI-------VCTCFNGASNIVQAGGLACLSPDGFQALRT 349 (441)
Q Consensus 278 ~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 349 (441)
+.+|||.++ .| +|+|+++++++++ +.+... ......+.+++++.|+.++|+... + +.
T Consensus 286 ---i~t~sK~l~-~G~~plg~v~~~~~i~--------~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~-~--~~ 350 (476)
T 3i5t_A 286 ---IITFAKGVT-SGYVPLGGLAISEAVL--------ARISGENAKGSWFTNGYTYSNQPVACAAALANIELME-R--EG 350 (476)
T ss_dssp ---EEEECGGGG-TTSSCCEEEEECHHHH--------HTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHH-H--TT
T ss_pred ---hhhhhhhhc-CCCcCeEEEEECHHHH--------HHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHH-h--HH
Confidence 236899998 79 9999999988773 333321 122344578899999998886211 1 34
Q ss_pred HHHHHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCCCC------------hHHHHHHHHHhcCeEEeCCCCcCC
Q 013521 350 VIDYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGSS------------SWDVFAEILEKTHILTIPGSGFGP 413 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ll~~~gi~v~pg~~f~~ 413 (441)
+.+.++++.+++.+.|+++ .+.... ..|.++++++.... ...+...++++ ||.+.|.
T Consensus 351 ~~~~~~~~~~~l~~~L~~l~~~~~v~~v~-~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~----- 423 (476)
T 3i5t_A 351 IVDQAREMADYFAAALASLRDLPGVAETR-SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFEL-GLIVRPL----- 423 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTEEEEE-EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHT-TEECEEE-----
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEE-ecCceeEEEEecCccccccccchhHHHHHHHHHHHHC-CCEEEec-----
Confidence 5666777777777777754 233333 35778888886321 34556666655 9999883
Q ss_pred CCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 414 GGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 414 ~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+ +++||+ +..+++++++++++|++++
T Consensus 424 -g-~~iRi~p~l~~t~e~i~~~l~~l~~~l 451 (476)
T 3i5t_A 424 -G-DLCVISPPLIISRAQIDEMVAIMRQAI 451 (476)
T ss_dssp -T-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -C-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2 689999 6679999999999998763
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=222.60 Aligned_cols=287 Identities=16% Similarity=0.160 Sum_probs=195.7
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHh-ccccccccccC
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKFLKETG 189 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~ 189 (441)
+.....++++.+++++ +.+ +.|++++| ++++.+ +..++++||+|+++.|+|+++...+... ...|
T Consensus 63 ~~~~~~~l~~~la~~~----g~~-~~i~~~sG-~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------- 129 (398)
T 1gc0_A 63 SNPTLNLLEARMASLE----GGE-AGLALASG-MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFG------- 129 (398)
T ss_dssp CCHHHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGT-------
T ss_pred CChHHHHHHHHHHHHh----CCC-cEEEECCH-HHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcC-------
Confidence 4567788999999886 544 45555555 689887 6777899999999999999987766322 1111
Q ss_pred ccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc
Q 013521 190 KYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY 269 (441)
Q Consensus 190 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~ 269 (441)
.+++.++.++.+.+...+ .+++++|++++|+||||.+++ +++|+++|++||+++|+|++|..+.... ++
T Consensus 130 --~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~---~~- 198 (398)
T 1gc0_A 130 --VKLRHVDMADLQALEAAM--TPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR---PL- 198 (398)
T ss_dssp --CEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC---GG-
T ss_pred --CEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC---ch-
Confidence 477777763211111111 257899999999999999998 8999999999999999999998655421 22
Q ss_pred ccCCCcceeEEEecCCcccCCcccee-EEEEeeccccccCCchhHHHHHHHHhh-hcCCCcHHHHHHHHHhcCCCcHHHH
Q 013521 270 EIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYSNGYPVIKDFNRIVCT-CFNGASNIVQAGGLACLSPDGFQAL 347 (441)
Q Consensus 270 ~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~ 347 (441)
.. +.++++.|+||.++.+|.|+ ||++++++.+ .+.+...... ...+.+++.+.++.+.++. +
T Consensus 199 ~~----~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~ 262 (398)
T 1gc0_A 199 EL----GADLVVHSATKYLSGHGDITAGIVVGSQALV-------DRIRLQGLKDMTGAVLSPHDAALLMRGIKT-----L 262 (398)
T ss_dssp GG----TCSEEEEETTTTTTCSSSCCCEEEEECHHHH-------HHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-----H
T ss_pred hh----CceEEEECCccccCCCCCCeEEEEEEChHHH-------HHHHHHHhhccCCCCCCHHHHHHHHhccch-----H
Confidence 12 34599999999999899998 9999987764 2234433333 3344677777766666652 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCe--------------eeCC---CCceEEEEEcCCCChHHHHHHHHHhcCeEEeC--
Q 013521 348 RTVIDYYKENAKIIVDAFQSL-GLK--------------VNGG---KNAPYVWVQFPGSSSWDVFAEILEKTHILTIP-- 407 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~-g~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-- 407 (441)
..+.+...++.+.+.+.|+++ ++. +..+ ..+.++.+++++ ..+....++++.|+.+..
T Consensus 263 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~l~~~~i~~~~~s 340 (398)
T 1gc0_A 263 NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG--GIGAGRRFMNALQLFSRAVS 340 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT--HHHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC--CHHHHHHHHHhCCCceeccC
Confidence 455666677777888888764 221 1111 246677778863 234566667777887765
Q ss_pred -CCCcC---------------------CCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 408 -GSGFG---------------------PGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 408 -g~~f~---------------------~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
|+.+. ...+++||||+.. ++++++.+.+.|+++
T Consensus 341 ~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 341 LGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp CSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 42210 0125899999844 578899999988875
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=226.93 Aligned_cols=331 Identities=16% Similarity=0.143 Sum_probs=210.2
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC---CcCcHHHH--HHHH-HHHhhhCCCCCCcEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA---EQGNMALR--TAIA-DKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~---~~g~~~lr--~~ia-~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
+.|+|..+++. .++.+.+++.+.+.+.. ..+|+. ..|...++ ++++ +++.+.++.+...++ ++|+++
T Consensus 46 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~----~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~-~~sGs~ 118 (447)
T 3h7f_A 46 DTLEMIASENF--VPRAVLQAQGSVLTNKY----AEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQ-PHSGAQ 118 (447)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGGCC----CCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECC-CSSHHH
T ss_pred CceeEecCCCC--CCHHHHHHHHHHhcCCc----cccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEE-eCCHHH
Confidence 46888665543 48899999988775211 011211 12444444 5555 555554576653333 556667
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhH-hH--HHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCCcc
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYI-DT--SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTD 216 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~-~~--~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~ 216 (441)
++.. +..++++||+|++++|+|+++. .. ....|.. ..++.++++++ ++..|++. ..+++
T Consensus 119 a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~ 187 (447)
T 3h7f_A 119 ANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKL----------YENGFYGVDPA-THLIDMDAVRATALEFRPK 187 (447)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHS----------SEEEEECCCTT-TCSCCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCe----------eEEEEcCcCcc-cCCcCHHHHHHHHHhcCCe
Confidence 8776 6778899999999999998732 11 1122210 35566666543 23344332 24688
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
++++++|+||++. ++++|.++|++||+++|+||+|.. +.+.+...+.. + ...+++.|+||++ +|+|.
T Consensus 188 ~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~--~---~~di~~~s~sK~l--~G~~g 255 (447)
T 3h7f_A 188 VIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV--P---HADVVSTTVHKTL--GGGRS 255 (447)
T ss_dssp EEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--T---TCSEEEEESSGGG--CCCSC
T ss_pred EEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC--C---CCcEEEecCCcCC--CCCCe
Confidence 9998899999986 489999999999999999999753 33333222211 1 1238899999997 48899
Q ss_pred EEEEeeccccccCCchhHHHHHHHHhhhc-CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-----C
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVCTCF-NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-----G 369 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g 369 (441)
||+++++++ .+.+........ .+++...+.++.+++......+++.+++++.++++.+.+.|.+. |
T Consensus 256 G~i~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g 327 (447)
T 3h7f_A 256 GLIVGKQQY--------AKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAG 327 (447)
T ss_dssp EEEEECGGG--------HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTT
T ss_pred EEEEECHHH--------HHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 999998876 345544333222 22333333433444432222356788899999999999999887 8
Q ss_pred CeeeC-CCCceEEEEEcCC-CChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEee------cCHHHHHHHHHHH
Q 013521 370 LKVNG-GKNAPYVWVQFPG-SSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSAF------GHREYISEACRRL 437 (441)
Q Consensus 370 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~~------~~~~~~~~~l~~l 437 (441)
+++.. +.+++++|+++.+ ..+.+.+..+++++||.+. |+..+.+..++++||+.. .++++++++++.|
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l 407 (447)
T 3h7f_A 328 VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADII 407 (447)
T ss_dssp CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHH
T ss_pred eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHH
Confidence 88754 3467889999863 2345666777777899999 664444555678999852 3689999999999
Q ss_pred HhhC
Q 013521 438 KNFL 441 (441)
Q Consensus 438 ~~~l 441 (441)
.+++
T Consensus 408 ~~~l 411 (447)
T 3h7f_A 408 ATAL 411 (447)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=218.50 Aligned_cols=312 Identities=17% Similarity=0.140 Sum_probs=205.6
Q ss_pred CCCCCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCc----HHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HH
Q 013521 79 IGDTTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGN----MALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQ 152 (441)
Q Consensus 79 ~g~~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~ 152 (441)
.|.|+.+ .++.+.+++.+.+.. .....|++..|. .++++.+++++ +++ ++++++|+++++.+ +.
T Consensus 6 ~g~p~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~g~~~l~~~l~~~la~~~----g~~--~~i~~~~gt~al~~~~~ 75 (418)
T 2c81_A 6 DHWPEWPQHSDRTRRKIEEVFQS----NRWAISGYWTGEESMERKFAKAFADFN----GVP--YCVPTTSGSTALMLALE 75 (418)
T ss_dssp --CCCSSCCCHHHHHHHHHHHHH----TCCSTTSBCCSSCCHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc----CCccccCcccCCHHHHHHHHHHHHHHh----CCC--cEEEeCCHHHHHHHHHH
Confidence 3455544 478999999998875 222347666674 55555555554 654 45666667899987 66
Q ss_pred Hh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC---CC--CCCccEEEEcCCCCc
Q 013521 153 ML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL---ST--TSRTDIIFFCSPNNP 226 (441)
Q Consensus 153 ~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~~--~~~~~~v~i~~p~NP 226 (441)
.+ +++||+|+++.|+|+++...+...| .+++.++++++ ++..|+ ++ .+++++|+++ ||
T Consensus 76 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~---~~ 139 (418)
T 2c81_A 76 ALGIGEGDEVIVPSLTWIATATAVLNVN------------ALPVFVDVEAD-TYCIDPQLIKSAITDKTKAIIPV---HL 139 (418)
T ss_dssp HTTCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCSBCHHHHGGGCCTTEEEECCB---CC
T ss_pred HcCCCCcCEEEECCCccHhHHHHHHHcC------------CEEEEEecCCC-CCCcCHHHHHHhhCCCCeEEEEe---CC
Confidence 67 7899999999999999999998888 58889988752 233332 22 2578887764 58
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecC--CcccCCccceeEEEEeec-
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSF--SKFAGFTGVRLGWTVVPE- 302 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~G~r~G~l~~~~- 302 (441)
||...+ +++|+++|++||++||+|++|+.+. +++. ++..+ .+ +.+.|| ||.++. | |+||+++++
T Consensus 140 ~G~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~---~~--~~~~s~s~~K~~~~-g-~~g~~~~~~~ 207 (418)
T 2c81_A 140 FGSMAN---MDEINEIAQEHNLFVIEDCAQSHGSVWNNQ--RAGTI---GD--IGAFSCQQGKVLTA-G-EGGIIVTKNP 207 (418)
T ss_dssp TTCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---SS--EEEEECCTTSSSCS-S-SCEEEEESCH
T ss_pred cCCccc---HHHHHHHHHHCCCEEEEECcccccCccCCE--ecccc---cc--eEEEeccCCcccCC-C-CeEEEEECCH
Confidence 998866 8899999999999999999999875 4321 22222 22 677777 999984 8 999999964
Q ss_pred cccccCCchhHHHHHHHHhhhc------------CC--C-----------cHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCF------------NG--A-----------SNIVQAGGLACLSPDGFQALRTVIDYYKEN 357 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~------------~~--~-----------~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 357 (441)
++ .+.+........ .. . ....+.+ .... ..+++++..++.+++
T Consensus 208 ~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa-~~~~---~l~~~~~~~~~~~~~ 275 (418)
T 2c81_A 208 RL--------FELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSA-ILLD---QLQELDDKNAIREKN 275 (418)
T ss_dssp HH--------HHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHH-HHHH---HHTTHHHHHHHHHHH
T ss_pred HH--------HHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHH-HHHH---HHHHHHHHHHHHHHH
Confidence 44 344443332211 00 0 0111221 1111 112246667777778
Q ss_pred HHHHHHHHHhC-CCeeeC-CCC-ceE---EE-EEcC-----CCChHHHHHHHHHhcCeE---EeCCCCcC---C------
Q 013521 358 AKIIVDAFQSL-GLKVNG-GKN-APY---VW-VQFP-----GSSSWDVFAEILEKTHIL---TIPGSGFG---P------ 413 (441)
Q Consensus 358 ~~~l~~~L~~~-g~~~~~-~~~-~~~---~~-~~~~-----~~~~~~~~~~ll~~~gi~---v~pg~~f~---~------ 413 (441)
++++.+.|+++ |+++.. +.+ +.. ++ +.++ +.+..++.+.|.+++||. +.++.... +
T Consensus 276 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~ 355 (418)
T 2c81_A 276 AMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWT 355 (418)
T ss_dssp HHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGG
T ss_pred HHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccc
Confidence 88999999887 788763 333 222 22 6776 345667777766555999 88875210 0
Q ss_pred -----------------CC--------CCeEEEEe--ec-CHHHHHHHHHHHHhh
Q 013521 414 -----------------GG--------NEHIRVSA--FG-HREYISEACRRLKNF 440 (441)
Q Consensus 414 -----------------~~--------~~~iRls~--~~-~~~~~~~~l~~l~~~ 440 (441)
.. .+.|||++ .. ++++++.+++.|+++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~ 410 (418)
T 2c81_A 356 KNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAEL 410 (418)
T ss_dssp CTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHH
Confidence 00 15899997 45 899999999999875
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-27 Score=234.72 Aligned_cols=331 Identities=15% Similarity=0.127 Sum_probs=207.1
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++||+.|.+ .+. .++.+.+++.+.+... ....| +.....++++.+++++ + .+++|++|+|++++
T Consensus 55 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~----~~~~~-~~~~~~~l~~~la~~~----~-~~~~v~~~~sgseA 124 (434)
T 2epj_A 55 GARIVDLVLAYGPLILGHKHPRVLEAVEEALARG----WLYGA-PGEAEVLLAEKILGYV----K-RGGMIRFVNSGTEA 124 (434)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC----SCCSS-CCHHHHHHHHHHHHHH----C-TTCEEEEESSHHHH
T ss_pred CCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC----CCCCC-CCHHHHHHHHHHHHhC----C-CCCEEEEeCCHHHH
Confidence 457899988753 222 6889999999988751 11234 2333455555555553 4 57899999999999
Q ss_pred HHH-HHH--hcCCCCEEEEeCCCchhhHhHHHH-hcccc-c--ccc-ccCc---cceeEEeecCCCCCccCCCCC--C--
Q 013521 148 ISR-LQM--LLGSNVTVAVQDPSFPAYIDTSVI-VGQAG-K--FLK-ETGK---YRNIVYMNCRPENNFFPDLST--T-- 212 (441)
Q Consensus 148 l~~-l~~--l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~-~--~~~-~~~~---~~~v~~v~~~~~~~~~~~~~~--~-- 212 (441)
+.+ +.. .+.+++.|++.+|+|+++...+.. .+... . ... .+.. ..++..++.+ + ..++++ .
T Consensus 125 ~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~---d-~~~le~~l~~~ 200 (434)
T 2epj_A 125 TMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN---D-VEALERVFAEY 200 (434)
T ss_dssp HHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT---C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC---C-HHHHHHHHHhC
Confidence 987 433 144567888889999886443221 11000 0 000 0000 0134455532 1 111221 1
Q ss_pred -CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
+++++ ++++| +||||.++ +++.+++|.++|++||+++|+||+|.+| ..+.........-.++ +.||||.++
T Consensus 201 ~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~ 274 (434)
T 2epj_A 201 GDRIAG-VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGD----IIVLGKIIG 274 (434)
T ss_dssp GGGEEE-EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCS----EEEEEGGGG
T ss_pred CCCEEE-EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCC----eeeecchhc
Confidence 24555 45566 67899876 7999999999999999999999999977 3222211112221233 358999998
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHHH---HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+|+|+||++++++++ +.+... ......+.+++.+.++.++++... + +++.++++++++++.+.|+
T Consensus 275 -~G~~~G~v~~~~~~~--------~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~-~--~~~~~~~~~~~~~l~~~L~ 342 (434)
T 2epj_A 275 -GGFPVGAVAGSREVM--------SLLTPQGKVFNAGTFNAHPITMAAGLATLKALE-E--EPVYSVSREAAKALEEAAS 342 (434)
T ss_dssp -TTSSCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHH-H--SCHHHHHHHHHHHHHHHHH
T ss_pred -CCcceeeeeecHHHH--------HhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH-h--cCHHHHHHHHHHHHHHHHH
Confidence 699999999998764 222210 111233467888888877775211 1 3455667777777777776
Q ss_pred hC----CCeeeCCCCceEEEEEcCCC--------------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHH
Q 013521 367 SL----GLKVNGGKNAPYVWVQFPGS--------------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHRE 428 (441)
Q Consensus 367 ~~----g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 428 (441)
++ ++....+..|+++|+.++.. ...++...+++ +||.+.|+.. .++|+++..+++
T Consensus 343 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~------~~~~~~~~~t~e 415 (434)
T 2epj_A 343 EVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPSNL------EAVFTGLPHQGE 415 (434)
T ss_dssp HHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT------SCEECCTTCSHH
T ss_pred HHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEeccCC------CcEEEeccCCHH
Confidence 53 55322223678999998641 13456666665 5999999742 357888777999
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|+++
T Consensus 416 ~i~~~l~~l~~~ 427 (434)
T 2epj_A 416 ALEIAVEGLRSS 427 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-25 Score=214.70 Aligned_cols=311 Identities=16% Similarity=0.131 Sum_probs=203.2
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCC
Q 013521 82 TTQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSN 158 (441)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~g 158 (441)
.+++.++.+.+++. . ...+.|+. .....++++.+++++ +. +++++|+|+++++.+ +..++++|
T Consensus 30 ~~~~~~~~~~~~~~---~-----~~~~~y~~~~~~~~~~l~~~la~~~----g~--~~~~~~~~gt~a~~~al~~l~~~g 95 (412)
T 2cb1_A 30 YGFKTLEEGQERFA---T-----GEGYVYARQKDPTAKALEERLKALE----GA--LEAVVLASGQAATFAALLALLRPG 95 (412)
T ss_dssp CCCSSHHHHHHHHH---H-----CCSCSBTTTCCHHHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHHHHTTCCTT
T ss_pred eecCChHHHHHHhc---c-----ccCcCcCCCCChHHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHHhCCC
Confidence 34556666655553 1 22234543 356788999999986 43 489999999999998 66678999
Q ss_pred CEEEEeCCCchhhHhHHHH-hccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHH
Q 013521 159 VTVAVQDPSFPAYIDTSVI-VGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQ 235 (441)
Q Consensus 159 d~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~ 235 (441)
|+|+++.|+|++....+.. +...| .+++.++.+. .++++ .+++++|++++|+||||.+++
T Consensus 96 d~vi~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~-----~~l~~~i~~~~~~v~~~~~~n~~G~~~~--- 158 (412)
T 2cb1_A 96 DEVVAAKGLFGQTIGLFGQVLSLMG---------VTVRYVDPEP-----EAVREALSAKTRAVFVETVANPALLVPD--- 158 (412)
T ss_dssp CEEEEETTCCHHHHHHHHHTTTTTT---------CEEEEECSSH-----HHHHHHCCTTEEEEEEESSCTTTCCCCC---
T ss_pred CEEEEeCCCchhHHHHHHHHHHHcC---------CEEEEECCCH-----HHHHHHhccCCeEEEEeCCCCCCccccc---
Confidence 9999999999887665433 22112 4788887641 11221 357899999999999999998
Q ss_pred HHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc--------c
Q 013521 236 LKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY--------S 307 (441)
Q Consensus 236 ~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~--------~ 307 (441)
+++|+++|++||+++|+|++|..+.... .++ . .+.++++.|+||.++.||.|+|++++.++.+. .
T Consensus 159 l~~i~~l~~~~~~~li~D~~~~~~~~~~--~~~-~----~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 231 (412)
T 2cb1_A 159 LEALATLAEEAGVALVVDNTFGAAGALC--RPL-A----WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQ 231 (412)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGTTTTSC--CGG-G----GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGC
T ss_pred HHHHHHHHHHcCCEEEEECCCccccccC--Ccc-c----cCCeEEEECCcccccCCCCcEEEEEEecccccccccccccc
Confidence 8999999999999999999998652211 111 1 24569999999999889999999987663210 0
Q ss_pred CC------------chhHHHHHHHH-hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee
Q 013521 308 NG------------YPVIKDFNRIV-CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVN 373 (441)
Q Consensus 308 ~~------------~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 373 (441)
.. ....+.++... .......++.....+...++ .+....++.+++.+.+.+.|.+. ++...
T Consensus 232 ~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~-----~l~~~~~~~~~~~~~l~~~L~~~~~v~~v 306 (412)
T 2cb1_A 232 PDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLE-----TVALRVARMSETARFLAERLQGHPKVKAL 306 (412)
T ss_dssp C-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGG-----GHHHHHHHHHHHHHHHHHHHHTCTTCSEE
T ss_pred ccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCc-----hHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 00 01122232221 11111223443333332332 23445556677888899999886 67632
Q ss_pred -CC----------------CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCC---------CcCC--------------
Q 013521 374 -GG----------------KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGS---------GFGP-------------- 413 (441)
Q Consensus 374 -~~----------------~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~---------~f~~-------------- 413 (441)
.| ..+.++.+.+ + + .+.+..++++.||.+ .++ .+..
T Consensus 307 ~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~-~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~ 382 (412)
T 2cb1_A 307 RYPGLPEDPAHRNARKYLASGGPILTLDL-G-D-LERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQA 382 (412)
T ss_dssp ECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-S-HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHT
T ss_pred ECCCCCCCccHHHHHHhCCCCceEEEEEe-C-C-HHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhc
Confidence 22 2356788888 4 4 344556666779999 774 1210
Q ss_pred -CCCCeEEEEeec--CHHHHHHHHHHHHh
Q 013521 414 -GGNEHIRVSAFG--HREYISEACRRLKN 439 (441)
Q Consensus 414 -~~~~~iRls~~~--~~~~~~~~l~~l~~ 439 (441)
..++.||+|+.. ++++++.+++.|++
T Consensus 383 g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 383 GVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 016799999843 67889999988875
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-27 Score=230.75 Aligned_cols=336 Identities=11% Similarity=0.066 Sum_probs=200.8
Q ss_pred CCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..+.. .+ ..+|.+.+++.+.+.+. ....| +.....+|++.+++++ + .+++|++|+|++++
T Consensus 52 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~----~~~~~-~~~~~~~la~~l~~~~----~-~~~~v~~~~sGsea 121 (429)
T 4e77_A 52 GKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG----LSFGA-PTEMEVKMAQLVTDLV----P-TMDMVRMVNSGTEA 121 (429)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC----SCCSS-CCHHHHHHHHHHHHHS----T-TCSEEEEESSHHHH
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHHHHhC----cccCC-CCHHHHHHHHHHHhhC----C-CCCEEEEeCcHHHH
Confidence 567899987753 23 25899999999988652 12234 4445556666666653 4 67899999999999
Q ss_pred HHH-HHH--hcCCCCEEEEeCCCchhhHhHHHHhcccccccc-----cc---CccceeEEeecCCCCCccCCCCC----C
Q 013521 148 ISR-LQM--LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-----ET---GKYRNIVYMNCRPENNFFPDLST----T 212 (441)
Q Consensus 148 l~~-l~~--l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-----~~---~~~~~v~~v~~~~~~~~~~~~~~----~ 212 (441)
+.. +.. ...+++.|++.+++|++...........+.+.. .. .....+..++.++ ..++++ .
T Consensus 122 ~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~le~~l~~~ 197 (429)
T 4e77_A 122 TMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYND----LASVRQAFEQY 197 (429)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTC----HHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCC----HHHHHHHHHhc
Confidence 997 432 224568999999999887542221111000000 00 0001223333211 111111 1
Q ss_pred CCccEEEEcCCCCccc-cC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSPNNPTG-HA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG-~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
++..++++++|+||+| .+ .+++.+++|.++|++||+++|+||+|.+| ..+.......+.-.++ +.||||.++
T Consensus 198 ~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pd----i~t~sK~~~- 271 (429)
T 4e77_A 198 PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPD----LTCLGKIIG- 271 (429)
T ss_dssp TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCS----EEEEEGGGG-
T ss_pred CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCC----eeeeccccc-
Confidence 2233456678866654 33 34667999999999999999999999987 4332222222221233 358999998
Q ss_pred ccceeEEEEeeccccccCCchhHHHHHHH---HhhhcCCCcHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDG-FQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+|+|+||++++++++ +.+... .....++.+++++.++.++++... ...+++.++..+..++.+.+.+.
T Consensus 272 ~G~~~G~~~~~~~~~--------~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 343 (429)
T 4e77_A 272 GGMPVGAFGGRREVM--------NALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAK 343 (429)
T ss_dssp TTSCCEEEEECHHHH--------TTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECHHHH--------HHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988774 222211 122334578888888888776211 12223333333333334444444
Q ss_pred hCCCeeeCCCCceEEEEEcCCCCh---------------HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHH
Q 013521 367 SLGLKVNGGKNAPYVWVQFPGSSS---------------WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYIS 431 (441)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~ 431 (441)
++++....+..|+++|+.++.... .++...++++ ||.+.|+. ...+|+++..++++++
T Consensus 344 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~~~~~~~~t~e~i~ 416 (429)
T 4e77_A 344 EENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSA------FEAGFMSLAHSNEDIQ 416 (429)
T ss_dssp HTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSST------TSCEECCTTCCHHHHH
T ss_pred hCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecC------CCCEEEeccCCHHHHH
Confidence 445443333468899999974311 5667777665 99999874 2357888777999999
Q ss_pred HHHHHHHhhC
Q 013521 432 EACRRLKNFL 441 (441)
Q Consensus 432 ~~l~~l~~~l 441 (441)
+++++|++++
T Consensus 417 ~~l~~l~~~l 426 (429)
T 4e77_A 417 KTVNAARRCF 426 (429)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=218.21 Aligned_cols=312 Identities=14% Similarity=0.105 Sum_probs=209.3
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
++++++.+.|+. ++ +.+++.+.+.. . .|.+..+..++++++++++ +. +++++++|+++++.+ +
T Consensus 7 ~~~~l~~~~~~~--~~-~~~~~~~~~~~----~---~~~~~~~~~~l~~~la~~~----~~--~~~~~~~~gt~a~~~~~ 70 (374)
T 3uwc_A 7 PYSYLERQFADI--EP-YLNDLREFIKT----A---DFTLGAELEKFEKRFAALH----NA--PHAIGVGTGTDALAMSF 70 (374)
T ss_dssp CSCCHHHHTSSC--HH-HHHHHHHHHHH----T---CCSSCHHHHHHHHHHHHHT----TC--SEEEEESCHHHHHHHHH
T ss_pred eeeccccCCCCc--hH-HHHHHHHHHHc----C---CcccChhHHHHHHHHHHHh----CC--CcEEEeCCHHHHHHHHH
Confidence 467777777654 34 88888887754 1 4667789999999999996 43 388899999999987 6
Q ss_pred HHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCcc
Q 013521 152 QML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPT 227 (441)
Q Consensus 152 ~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPt 227 (441)
..+ +++||+|+++.|+|+++...+...| .+++.++.+.+..++++ +++ .+++++|+ |+|||
T Consensus 71 ~~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~ 135 (374)
T 3uwc_A 71 KMLNIGAGDEVITCANTFIASVGAIVQAG------------ATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYT 135 (374)
T ss_dssp HHTTCCTTCEEEEESSSCHHHHHHHHHTT------------CEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGG
T ss_pred HHcCCCCCCEEEECCCccHHHHHHHHHcC------------CEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCc
Confidence 777 8999999999999999999998888 58889988733222222 222 24677665 89999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC--cccCCccceeEEEEeecccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~~~~~ 305 (441)
|.+.+ +++|.++|++||+++|+|++|..+..-. ......+ . ++++.|+| |.++.+|. .|+++++++.+
T Consensus 136 G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~-~~~~~~~---~--d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~ 205 (374)
T 3uwc_A 136 GNIAD---MPALAKIAKKHNLHIVEDACQTILGRIN-DKFVGSW---G--QFACFSLHPLKNLNVWSD-AGVIITHSDEY 205 (374)
T ss_dssp GCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEET-TEETTSS---S--SEEEEECSSSSSSCCSSC-CEEEEESCHHH
T ss_pred CCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeC-Ceecccc---c--cEEEEeCCCCCcCCccce-eEEEEeCCHHH
Confidence 99988 8889999999999999999998643211 1111111 2 37778866 99974365 89998876543
Q ss_pred ccCCchhHHHHHHHHhhh------------cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-C-Ce
Q 013521 306 YSNGYPVIKDFNRIVCTC------------FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-G-LK 371 (441)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g-~~ 371 (441)
.+.+....... ....+.+...+....+ +.+++..++.+++.+.+.+.|+++ + +.
T Consensus 206 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 273 (374)
T 3uwc_A 206 -------AEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM-----NQLETITEKRRGIAHLYDQSFVDLSEFID 273 (374)
T ss_dssp -------HHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHTGGGTTTEE
T ss_pred -------HHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 33444332210 0112333322222222 224667777788888899999887 4 66
Q ss_pred eeCCC-CceE----EEEEcCCCChHHHHHHHHHhcCeEEeCCCCcC----CC-----------------CCCeEEEEee-
Q 013521 372 VNGGK-NAPY----VWVQFPGSSSWDVFAEILEKTHILTIPGSGFG----PG-----------------GNEHIRVSAF- 424 (441)
Q Consensus 372 ~~~~~-~~~~----~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----~~-----------------~~~~iRls~~- 424 (441)
+.... ++.. +++..+ +..++.+.|.+ +||.+.++.... +. ..+.+||++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~ 350 (374)
T 3uwc_A 274 VPVRREGVYHVFHIYVLRVK--YRDQLFQYLKD-NGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHP 350 (374)
T ss_dssp CCCCCTTEECCCSSEEEEET--THHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCT
T ss_pred eccCCCCCceeeEEEEEEcC--CHHHHHHHHHH-CCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCC
Confidence 54222 2222 223332 45566666655 599999986210 00 0268999973
Q ss_pred -cCHHHHHHHHHHHHhh
Q 013521 425 -GHREYISEACRRLKNF 440 (441)
Q Consensus 425 -~~~~~~~~~l~~l~~~ 440 (441)
.++++++++++.|+++
T Consensus 351 ~~t~edi~~~~~~l~~~ 367 (374)
T 3uwc_A 351 YLTEEEINYIIKKVREF 367 (374)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 4899999999999876
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-25 Score=213.01 Aligned_cols=248 Identities=12% Similarity=0.134 Sum_probs=172.9
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH----HHHhccccccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT----SVIVGQAGKFLKE 187 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~ 187 (441)
.+...++++.+|+++ +.+ +.++++++++++.+ +..++++||+|+++.|+|++.... +...|
T Consensus 58 ~~~~~~l~~~la~~~----g~~--~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g-------- 123 (389)
T 3acz_A 58 NPTVEQFEEMVCSIE----GAA--GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFG-------- 123 (389)
T ss_dssp CHHHHHHHHHHHHHH----TCS--EEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTT--------
T ss_pred ChHHHHHHHHHHHHh----CCC--eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC--------
Confidence 556789999999986 544 55555566699987 566789999999999999987665 35566
Q ss_pred cCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCc
Q 013521 188 TGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS 267 (441)
Q Consensus 188 ~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~ 267 (441)
.+++.++..+.+.+...+ .+++++|++++|+||||.+++ +++|+++|++||+++|+|++|..+... .+
T Consensus 124 ----~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~---~~ 191 (389)
T 3acz_A 124 ----IEVDLIDTSDVEKVKAAW--KPNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL---KP 191 (389)
T ss_dssp ----CEEEEECTTCHHHHHHTC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC---CG
T ss_pred ----CEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc---Cc
Confidence 578888763211111111 257899999999999999998 889999999999999999999865432 12
Q ss_pred ccccCCCcceeEEEecCCcccCCcccee-EEEEeec-cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 268 IYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPE-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 268 ~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
+ .. +.++++.|+||.++.+|.|+ ||+++++ ++ .+.+...........++..+.++.+.++.
T Consensus 192 ~-~~----~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~--------~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---- 254 (389)
T 3acz_A 192 L-EL----GADIALHSVSKYINGHGDVIGGVSSAKTAED--------IATIKFYRKDAGSLMAPMDAFLCARGMKT---- 254 (389)
T ss_dssp G-GT----TCSEEEEETTTTTTCSSCCCCEEEEESSHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHHTT----
T ss_pred c-cc----CCeEEEECChhhccCCCCceeEEEEECcHHH--------HHHHHHHHHhcCCCCCHHHHHHHHcCccH----
Confidence 2 12 34599999999999899998 9999998 66 35555444433444566666666666642
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-Ce--------------eeC---CCCceEEEEEcCCCChHHHHHHHHHhcCeEEeC
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSLG-LK--------------VNG---GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP 407 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~g-~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 407 (441)
+..+.+...++.+.+.+.|++++ +. +.. ...+.++.+.+++ .+....++++.||.+.+
T Consensus 255 -l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~---~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 255 -LPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS---FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---HHHHHHHHTTCSSSEEB
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC---HHHHHHHHHhCCCcEEC
Confidence 23344555566777777776642 11 100 1135678888864 34456667777988877
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-25 Score=217.94 Aligned_cols=325 Identities=11% Similarity=-0.007 Sum_probs=220.2
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCc-----EEEcCCcHHHHHH-HHHhcC--
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDE-----IFISDGAQSDISR-LQMLLG-- 156 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-----I~~t~G~~~al~~-l~~l~~-- 156 (441)
+.++.+.+++.+++.. ...+|...++..++++++++++.+.+|.+.++ +++|+|+++++.+ +..+.+
T Consensus 53 ~~~~~v~e~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~ 127 (452)
T 2dgk_A 53 WDDENVHKLMDLSINK-----NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRW 127 (452)
T ss_dssp CCCHHHHHHHHHTTTC-----BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc-----CCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHH
Confidence 4557788888877642 23345556788899999999988877887765 9999999999887 555443
Q ss_pred ------CC-----CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEE
Q 013521 157 ------SN-----VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFF 220 (441)
Q Consensus 157 ------~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i 220 (441)
+| ++|++++ +|..+...+..+| ++++.+++++ +++..|++. .+++++|++
T Consensus 128 ~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G------------~~v~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~ 193 (452)
T 2dgk_A 128 RKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWD------------VELREIPMRP-GQLFMDPKRMIEACDENTIGVVP 193 (452)
T ss_dssp HHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTT------------CEEEECCCBT-TBCSCCHHHHHHHCCTTEEEEEC
T ss_pred HHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcC------------ceEEEEecCC-CCCeECHHHHHHHHhhCCEEEEE
Confidence 55 5999999 9999999999898 6899999875 234444332 357899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHc------CcEEEEccccccccc---CCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKAN------GSIIVYDSAYAAYIT---DPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~~~~~~~---~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
++|+||||.+.+ +++|.++|+++ |+++++|++|+.+.. .+.... .+. .++..++..|++|.+ ++
T Consensus 194 ~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~--~~~-~~~~d~~~~~~hK~~-~~ 266 (452)
T 2dgk_A 194 TFGVTYTGNYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVW--DFR-LPRVKSISASGHKFG-LA 266 (452)
T ss_dssp BBSCTTTCBBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC--STT-STTEEEEEEETTTTT-CC
T ss_pred EcCCcCCcccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchh--hcC-CCCCcEEEECccccc-CC
Confidence 999999999988 88888899995 999999999997643 221111 111 234456788899955 58
Q ss_pred cceeEEEEeecc-ccccCCchhHHHHHHHH--h----hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 013521 292 GVRLGWTVVPEE-LRYSNGYPVIKDFNRIV--C----TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDA 364 (441)
Q Consensus 292 G~r~G~l~~~~~-~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (441)
|+++||++++++ .+..... ....+.... . ........+.+.+++..+. .+.++++.+++.++++++.+.
T Consensus 267 ~~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg---~~g~~~~~~~~~~~a~~l~~~ 342 (452)
T 2dgk_A 267 PLGCGWVIWRDEEALPQELV-FNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG---REGYTKVQNASYQVAAYLADE 342 (452)
T ss_dssp CSSCEEEEESSGGGSCGGGC-EEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCHHHHHHHhc-cCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999754 3211000 000000000 0 0001113445555555542 345688889999999999999
Q ss_pred HHhC-CCeeeCC----CCceEEEEEcCCC-----ChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEeec--CHHHHH
Q 013521 365 FQSL-GLKVNGG----KNAPYVWVQFPGS-----SSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSAFG--HREYIS 431 (441)
Q Consensus 365 L~~~-g~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~~~--~~~~~~ 431 (441)
|+++ ++++..+ ...+++.+++++. +..++.+.|.++ ||.+....... ..+..++|+++.. ++++++
T Consensus 343 L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id 421 (452)
T 2dgk_A 343 IAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLR-GWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAE 421 (452)
T ss_dssp HHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHT-TCBCCEEECSTTCTTCEEEEEECCTTCCHHHHH
T ss_pred HHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhc-CCeeeeeeCCcccCCeEEEEEEecCCCCHHHHH
Confidence 9988 5887643 3556788888642 236777776655 98654311111 1235689999854 689999
Q ss_pred HHHHHHHhh
Q 013521 432 EACRRLKNF 440 (441)
Q Consensus 432 ~~l~~l~~~ 440 (441)
++++.|+++
T Consensus 422 ~li~~l~~~ 430 (452)
T 2dgk_A 422 LLLEDYKAS 430 (452)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=231.57 Aligned_cols=341 Identities=10% Similarity=0.045 Sum_probs=215.3
Q ss_pred CCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+++++|+..| ...+ ..+|.+.+++.+.+.+... .|....+..+.+.++++.+.+..+.+.++|++++|++++
T Consensus 54 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA 128 (472)
T 3hmu_A 54 GEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPY-----YNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEA 128 (472)
T ss_dssp CCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSC-----CCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccc-----cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Confidence 5678898876 3333 3579999999999876431 222222344555566666655456677899999999999
Q ss_pred HHH-HHHhcC--------CCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCC--C-CCc---------
Q 013521 148 ISR-LQMLLG--------SNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRP--E-NNF--------- 205 (441)
Q Consensus 148 l~~-l~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~--~-~~~--------- 205 (441)
+.. +..+.. +++.|++.+|+|+++...+...+....+.. .. ....+..++... . +.+
T Consensus 129 ~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~ 207 (472)
T 3hmu_A 129 NDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLA 207 (472)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHH
Confidence 987 444332 468999999999998766655543211000 00 001344444321 0 000
Q ss_pred -cCCCCC-----C-CCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcce
Q 013521 206 -FPDLST-----T-SRTDIIFFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV 277 (441)
Q Consensus 206 -~~~~~~-----~-~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
..++++ . +++++|++..++|++|.+. +++.+++|.++|++||+++|+||+|..|...+.........-.+|
T Consensus 208 ~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pd- 286 (472)
T 3hmu_A 208 RARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPH- 286 (472)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCS-
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCc-
Confidence 011111 1 2345544434477778755 899999999999999999999999998765543222222322333
Q ss_pred eEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHH--HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013521 278 AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNR--IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYK 355 (441)
Q Consensus 278 ~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 355 (441)
+.+|||.++.+|+|+||+++++++ .+.+.. .......+.+++++.|+.++|+.... +.+.++++
T Consensus 287 ---i~t~sK~l~gg~~plG~v~~~~~i--------~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~ 352 (472)
T 3hmu_A 287 ---IMTIAKGLSSGYAPIGGSIVCDEV--------AHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE---ENILDHVR 352 (472)
T ss_dssp ---EEEECGGGTTTSSCCEEEEEEHHH--------HHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred ---eeeechhhhcCCcceEEEEECHHH--------HHhcccCCccccCCCCCCHHHHHHHHHHHHHHHH---hHHHHHHH
Confidence 236899998444999999999887 344411 11222445788999999988862111 33455566
Q ss_pred -HHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCCCC-------------hHHHHHHHHHhcCeEEeCCCCcCCCCCC
Q 013521 356 -ENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGSS-------------SWDVFAEILEKTHILTIPGSGFGPGGNE 417 (441)
Q Consensus 356 -~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 417 (441)
++.+++.+.|+++ .+.... ..|.++++++.... ..++...++++ ||.+.|+. +
T Consensus 353 ~~~~~~l~~~L~~l~~~~~v~~vr-~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g-------~ 423 (472)
T 3hmu_A 353 NVAAPYLKEKWEALTDHPLVGEAK-IVGMMASIALTPNKASRAKFASEPGTIGYICRERCFAN-NLIMRHVG-------D 423 (472)
T ss_dssp HTHHHHHHHHHHGGGGSTTEEEEE-EETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHT-TBCCEEET-------T
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEE-ecCceEEEEEecCccccccccchhHHHHHHHHHHHHHC-CcEEEecC-------C
Confidence 6666666666554 233333 35778888875211 34556666655 99999852 7
Q ss_pred eEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 418 HIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 418 ~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+|||+ +..+++++++++++|++++
T Consensus 424 ~iRi~p~~~~t~e~i~~~l~~l~~~l 449 (472)
T 3hmu_A 424 RMIISPPLVITPAEIDEMFVRIRKSL 449 (472)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999 5679999999999998763
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-25 Score=215.55 Aligned_cols=282 Identities=13% Similarity=0.090 Sum_probs=193.5
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccccc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLK 186 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~ 186 (441)
+.....++++.+|+++ +. +++++++|+++++.+ +..++++||+|+++.|+|++....+ ...|
T Consensus 64 ~~~~~~~l~~~la~~~----g~--~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g------- 130 (392)
T 3qhx_A 64 GNPTRTALEAALAAVE----DA--AFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWN------- 130 (392)
T ss_dssp CCHHHHHHHHHHHHHT----TC--SEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGT-------
T ss_pred CChHHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcC-------
Confidence 3456778999999885 44 378888888999987 6778899999999999999887766 3344
Q ss_pred ccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC
Q 013521 187 ETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR 266 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~ 266 (441)
.+++.++.++-+.+...+ .+++++|++++|+||||.+.+ +++|+++|++||+++|+|++|..+.... +
T Consensus 131 -----~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~-~- 198 (392)
T 3qhx_A 131 -----VEYTPVALADLDAVRAAI--RPTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQ-P- 198 (392)
T ss_dssp -----CEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC-G-
T ss_pred -----cEEEEeCCCCHHHHHHhh--CCCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCC-h-
Confidence 478888764211111111 358999999999999999998 8999999999999999999998542211 1
Q ss_pred cccccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 267 SIYEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 267 ~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
+ .. +.++++.|+||.+|.+| +|+||++++++.+ .+.+...........+++.+.++...++.
T Consensus 199 -~-~~----~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~-------~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---- 261 (392)
T 3qhx_A 199 -L-SL----GADVVLHSTTKYIGGHSDVVGGALVTNDEEL-------DQSFAFLQNGAGAVPGPFDAYLTMRGLKT---- 261 (392)
T ss_dssp -G-GG----TCSEEEEETTTTTTCSSCCCCEEEEESCHHH-------HHHHHHHHHHHCCCCCHHHHHHHHHHHTT----
T ss_pred -H-Hh----CCcEEEEcCccccCCCCCceEEEEEECcHHH-------HHHHHHHHHhcCCCCCHHHHHHHHhhhhH----
Confidence 1 12 33589999999999766 8999999985332 45555555555566777777776666653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCe-eeCC----------------CCceEEEEEcCCC-ChHHHHHHHHHhcCeEEe
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSL-GLK-VNGG----------------KNAPYVWVQFPGS-SSWDVFAEILEKTHILTI 406 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~ 406 (441)
+..+.++..++.+.+.+.|+++ .+. +..| ..|..+++.+++. ...+.+...++..++.+.
T Consensus 262 -l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s 340 (392)
T 3qhx_A 262 -LVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAES 340 (392)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSC
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCC
Confidence 2445566777888888888876 332 2111 1266789999752 222222333445578888
Q ss_pred CCCCcC----C--------------CCCCeEEEEeec--CHHHHHHHHHH
Q 013521 407 PGSGFG----P--------------GGNEHIRVSAFG--HREYISEACRR 436 (441)
Q Consensus 407 pg~~f~----~--------------~~~~~iRls~~~--~~~~~~~~l~~ 436 (441)
.|+.+. + ..++.||||++. .++.++.+.+.
T Consensus 341 ~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~a 390 (392)
T 3qhx_A 341 LGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQA 390 (392)
T ss_dssp CCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHH
T ss_pred CCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHH
Confidence 887642 1 236789999854 23344444443
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=217.82 Aligned_cols=285 Identities=16% Similarity=0.151 Sum_probs=187.9
Q ss_pred CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccc
Q 013521 109 GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKF 184 (441)
Q Consensus 109 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~ 184 (441)
.| +.++..+|++++|+++ +.+ +.|++++|+ +++.++..++++||+|+++.|+|++....+ +..|
T Consensus 63 r~-~~p~~~~l~~~la~~~----g~~-~~i~~~sG~-~ai~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G----- 130 (403)
T 3cog_A 63 RS-GNPTRNCLEKAVAALD----GAK-YCLAFASGL-AATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG----- 130 (403)
T ss_dssp ----CHHHHHHHHHHHHHH----TCS-EEEEESCHH-HHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTGGGGT-----
T ss_pred CC-CCchHHHHHHHHHHHh----CCC-cEEEECCHH-HHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHHcC-----
Confidence 45 4567889999999997 444 678888875 788874338899999999999999865543 3345
Q ss_pred ccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC-cEEEEcccccccccCC
Q 013521 185 LKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANG-SIIVYDSAYAAYITDP 263 (441)
Q Consensus 185 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~-~~ii~De~~~~~~~~~ 263 (441)
.+++.++.++.+.+...+ .+++++|++++|+||||.+++ +++|+++|++|| +++|+|++|..+.+..
T Consensus 131 -------~~v~~v~~~d~~~l~~~i--~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~ 198 (403)
T 3cog_A 131 -------LKISFVDCSKIKLLEAAI--TPETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR 198 (403)
T ss_dssp -------CEEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC
T ss_pred -------CEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC
Confidence 478888774211111111 357899999999999999998 899999999999 9999999999765421
Q ss_pred CCCcccccCCCcceeEEEecCCcccCCcc-ceeEEEEeec-cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC
Q 013521 264 SPRSIYEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPE-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP 341 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 341 (441)
+ + . .+.++++.|+||.++.+| +|+||+++++ ++ .+.+...........+++.+.++...++.
T Consensus 199 -~--~-~----~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l--------~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 262 (403)
T 3cog_A 199 -P--L-A----LGADISMYSATKYMNGHSDVVMGLVSVNCESL--------HNRLRFLQNSLGAVPSPIDCYLCNRGLKT 262 (403)
T ss_dssp -T--T-T----TTCSEEEEETTTTTTCSSCCCCEEEEECCHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred -c--c-c----cCCeEEEEcChhhccCCCCCeEEEEEECcHHH--------HHHHHHHHHhcCCCCCHHHHHHHHhhhhH
Confidence 2 2 1 234699999999998766 4799999964 44 45555544444455678888777766653
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhC---------------CCeeeCCC---CceEEEEEcCCCChHHHHHHHHHhcCe
Q 013521 342 DGFQALRTVIDYYKENAKIIVDAFQSL---------------GLKVNGGK---NAPYVWVQFPGSSSWDVFAEILEKTHI 403 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi 403 (441)
+..+.+...++...+.+.|+++ ++++..+. .|.++.+.+++. . +....++++.||
T Consensus 263 -----l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~-~-~~~~~~l~~~~i 335 (403)
T 3cog_A 263 -----LHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT-L-QHAEIFLKNLKL 335 (403)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-H-HHHHHHHHHCSS
T ss_pred -----HHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC-H-HHHHHHHHhCCc
Confidence 1333444455555555555543 22222211 255555677642 2 345556666787
Q ss_pred EEeC---C----------CCcC-----------CCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 404 LTIP---G----------SGFG-----------PGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 404 ~v~p---g----------~~f~-----------~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
.+.. | +.+. ...+++||||++. +++.++.+.+.|+++
T Consensus 336 ~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~ 398 (403)
T 3cog_A 336 FTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAA 398 (403)
T ss_dssp SEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 5432 2 2221 1126899999854 456677777777654
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=217.56 Aligned_cols=282 Identities=14% Similarity=0.092 Sum_probs=188.2
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccccc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLK 186 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~ 186 (441)
+.....++|+++|+++ +.+ +.|++++| ++++++ +. ++++||+|+++.|+|++....+ +..|
T Consensus 53 ~~~~~~~lr~~la~~~----g~~-~~i~~~sG-t~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G------- 118 (393)
T 1n8p_A 53 QNPNRENLERAVAALE----NAQ-YGLAFSSG-SATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHG------- 118 (393)
T ss_dssp CCHHHHHHHHHHHHHT----TCS-EEEEESCH-HHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTC-------
T ss_pred CChhHHHHHHHHHHHh----CCC-cEEEECCh-HHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcC-------
Confidence 3456789999999996 544 45555555 899998 56 8899999999999999765543 3334
Q ss_pred ccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc----CcEEEEcccccccccC
Q 013521 187 ETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKAN----GSIIVYDSAYAAYITD 262 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~----~~~ii~De~~~~~~~~ 262 (441)
.+++.++.++ +.+...+ .+++++|++++|+||||.+++ +++|+++|++| |+++|+|++|..+...
T Consensus 119 -----~~v~~v~~~d-~~l~~~i--~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~ 187 (393)
T 1n8p_A 119 -----VETSFTNDLL-NDLPQLI--KENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS 187 (393)
T ss_dssp -----SCCEEESSHH-HHHHHHS--CSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC
T ss_pred -----cEEEEeCCCh-HHHHHhc--ccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC
Confidence 4788887752 1211111 257899999999999999998 88999999999 9999999999976653
Q ss_pred CCCCcccccCCCcceeEEEecCCcccCCcccee-EEEEee-ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcC
Q 013521 263 PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS 340 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 340 (441)
. ...+ +.++++.|+||.+|.+|+|+ ||++++ +++ .+.+...........++..+.++...++
T Consensus 188 -~---~~~~----~~di~~~S~sK~~g~~G~rigG~~~~~~~~~--------~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 251 (393)
T 1n8p_A 188 -N---PLNF----GADIVVHSATKYINGHSDVVLGVLATNNKPL--------YERLQFLQNAIGAIPSPFDAWLTHRGLK 251 (393)
T ss_dssp -C---GGGG----TCSEEEEETTTTTTCSSCCCCEEEEESCHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred -C---HHHc----CCeEEEEECcccccCCCCceeEEEEeCCHHH--------HHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence 1 2222 34699999999999899999 999985 455 3455544433333455555555555554
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhCC--Ce-eeCC---------------C--C-ceEEEEEcCCC--ChHHHHHHH
Q 013521 341 PDGFQALRTVIDYYKENAKIIVDAFQSLG--LK-VNGG---------------K--N-APYVWVQFPGS--SSWDVFAEI 397 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~~~---------------~--~-~~~~~~~~~~~--~~~~~~~~l 397 (441)
. +....+...++++.+.+.|+++. +. +..| . . +..+++.+++. ....++..
T Consensus 252 ~-----~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~- 325 (393)
T 1n8p_A 252 T-----LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASS- 325 (393)
T ss_dssp T-----HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHH-
T ss_pred h-----HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhh-
Confidence 2 34455666777788888887762 32 2111 1 2 66899999752 11222222
Q ss_pred HHhcCeEEeCCCC----------cC-----------CCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 398 LEKTHILTIPGSG----------FG-----------PGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 398 l~~~gi~v~pg~~----------f~-----------~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
++..++.+..|+. +. ...++.||||++. ++++++.+.+.|+++
T Consensus 326 l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 326 TRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp CSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 2333555554432 21 0125799999854 567788888887764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=219.09 Aligned_cols=279 Identities=13% Similarity=0.123 Sum_probs=188.1
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH----Hhccccccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAGKFLKE 187 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~ 187 (441)
.....++++.+|+++ +.+ +.|++++|+ +++++ +..++++||+|+++.|+|++....+. ..|
T Consensus 113 ~~~~~~l~~~lA~l~----g~~-~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G-------- 178 (445)
T 1qgn_A 113 NPTTVVLEEKISALE----GAE-STLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMG-------- 178 (445)
T ss_dssp CHHHHHHHHHHHHHH----TCS-EEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGT--------
T ss_pred ChHHHHHHHHHHHHh----CCC-cEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcC--------
Confidence 345568999999886 554 677777776 88887 67788999999999999998776533 344
Q ss_pred cCccceeEEeecCCCCCccCCCCC--CCCc-cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC
Q 013521 188 TGKYRNIVYMNCRPENNFFPDLST--TSRT-DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS 264 (441)
Q Consensus 188 ~~~~~~v~~v~~~~~~~~~~~~~~--~~~~-~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~ 264 (441)
.+++.++.++. .++++ .+++ ++|++++|+||||.+++ +++|+++|++||+++|+|++|.......
T Consensus 179 ----~~v~~v~~~d~----~~l~~ai~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~- 246 (445)
T 1qgn_A 179 ----ITATVIDPADV----GALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK- 246 (445)
T ss_dssp ----CEEEEECSSCH----HHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred ----CEEEEeCCCCH----HHHHHHhccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 47888876411 11221 2467 99999999999999998 7899999999999999999998543211
Q ss_pred CCcccccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 343 (441)
+ + .+ +.++++.|+||.+|..| +++||+++++++ .+.+...........+++....+...++
T Consensus 247 ~--~-~~----g~Div~~S~sK~~gg~gd~~~G~l~~~~~l--------~~~l~~~~~~~g~~~~~~~a~~~~~~l~--- 308 (445)
T 1qgn_A 247 A--L-AL----GADLVLHSATKFLGGHNDVLAGCISGPLKL--------VSEIRNLHHILGGALNPNAAYLIIRGMK--- 308 (445)
T ss_dssp T--T-TT----TCSEEEECTTTTTTCSSSCCCEEEEECHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHGG---
T ss_pred c--c-cc----CCEEEEECCcccccccccceEEEEEECHHH--------HHHHHHHHHHhCCCCCHHHHHHHHHhHH---
Confidence 1 1 11 33589999999998444 479999998876 3455444433333345554443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CC-eeeCC----------------CCceEEEEEcCCC-C-hHHHHHHHHHhcCe
Q 013521 344 FQALRTVIDYYKENAKIIVDAFQSL-GL-KVNGG----------------KNAPYVWVQFPGS-S-SWDVFAEILEKTHI 403 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~----------------~~~~~~~~~~~~~-~-~~~~~~~ll~~~gi 403 (441)
.+..+.++..++++.+.+.|+++ ++ .+..| ..+.++++.+++. . ...++.. ++..++
T Consensus 309 --~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~-l~~~~i 385 (445)
T 1qgn_A 309 --TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDA-LKIPYI 385 (445)
T ss_dssp --GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHH-CSSSEE
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHh-CCCceE
Confidence 23555566777788899999887 45 33322 1467889999752 1 1222222 222378
Q ss_pred EEeCCCCcCC---------------------CCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 404 LTIPGSGFGP---------------------GGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 404 ~v~pg~~f~~---------------------~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
.++.|+.+.. ..++.||||++ .++++.+++.|+++
T Consensus 386 ~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~a 441 (445)
T 1qgn_A 386 APSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQA 441 (445)
T ss_dssp CSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHH
T ss_pred eccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHH
Confidence 8888876521 12579999986 44677777777664
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-26 Score=228.04 Aligned_cols=324 Identities=16% Similarity=0.162 Sum_probs=201.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
.++|+..+.+ + +.+.+++.+.+. .+...|++..+..+|++++++++ + .+++++|+|+++|+.+ +
T Consensus 42 ~ylD~~~~~~---~-~~v~~a~~~~l~-----~~~~~y~~~~~~~~l~~~la~~~----~--~~~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 42 VFIDLLTDSG---T-GAVTQSMQAAMM-----RGDEAYSGSRSYYALAESVKNIF----G--YQYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp CSEECSCCSS---C-SCCCHHHHHHTT-----SCCCCSSSCHHHHHHHHHHHHHH----C--CSEEEEEC--CCSHHHHH
T ss_pred eeEecccCCC---c-HHHHHHHHHHhc-----cCcceeccCchhHHHHHHHHHHh----C--cCcEEEcCCcHHHHHHHH
Confidence 3556654432 2 667777777664 22346877788999999999997 3 3799999999999887 6
Q ss_pred HHhcCC-----C----CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEe------ecCC--CCCccCCCCC---
Q 013521 152 QMLLGS-----N----VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYM------NCRP--ENNFFPDLST--- 211 (441)
Q Consensus 152 ~~l~~~-----g----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v------~~~~--~~~~~~~~~~--- 211 (441)
..++++ | |+|++..+.|..+.......|. .+... +.+. ...+..|++.
T Consensus 107 ~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~ 174 (467)
T 2oqx_A 107 PVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGC------------TVRNVYIKEAFDTGVRYDFKGNFDLEGLER 174 (467)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTC------------EEEECBCTTTTCTTSCCTTTTCBCHHHHHH
T ss_pred HHHhccccccCCCCccceEEecccccccchhhhhccCc------------ceeeccccccccCCCCCCccCCcCHHHHHH
Confidence 666777 8 9988875444544445544442 22221 1110 0111223221
Q ss_pred --C----CCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCcEEEEcccccc----------cccCCCCCcccccC--
Q 013521 212 --T----SRTDIIFFCSPNNPT-GHAATWQQLKKLVEFAKANGSIIVYDSAYAA----------YITDPSPRSIYEIP-- 272 (441)
Q Consensus 212 --~----~~~~~v~i~~p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~----------~~~~~~~~~~~~~~-- 272 (441)
. +++++|++++||||| |.+++.+++++|+++|++||+++|+|+++.. ..+.+ .+...+.
T Consensus 175 ~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g--~~~~~~~~~ 252 (467)
T 2oqx_A 175 GIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKD--WTIEQITRE 252 (467)
T ss_dssp HHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTT--SCHHHHHHH
T ss_pred HHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccC--ccHHHHhhh
Confidence 1 368999999999998 8999999999999999999999999966542 12222 2222221
Q ss_pred --CCcceeEEEecCCcccCCc-cceeEEEEeecc-ccccCCchhHHHHHHHHhhh-----cCCCcHHHHHHHHHhcCCCc
Q 013521 273 --GAREVAIEISSFSKFAGFT-GVRLGWTVVPEE-LRYSNGYPVIKDFNRIVCTC-----FNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 273 --~~~~~~i~i~S~SK~~~~~-G~r~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~l~~~~ 343 (441)
...+ +++.|+||.+|+| | ||++++++ ++.. ...+....... ....+.....+....+.
T Consensus 253 ~~~~~d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~--- 319 (467)
T 2oqx_A 253 TYKYAD--MLAMSAKKDAMVPMG---GLLCMKDDSFFDV-----YTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY--- 319 (467)
T ss_dssp HGGGCS--EEEEESSSTTCCSSC---EEEEECSGGGHHH-----HHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH---
T ss_pred hhccCC--eEEEecccccCCCCc---eEEEecChhHHHH-----HHHHHHhhhccCCcccccchhhhHHHHHHHhhH---
Confidence 1123 4578999999866 4 88888776 4210 12222221111 11122222211111111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcC----CCC-----hHHHHHHHHHhcCeEEeCCCCc--
Q 013521 344 FQAL-RTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP----GSS-----SWDVFAEILEKTHILTIPGSGF-- 411 (441)
Q Consensus 344 ~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~ll~~~gi~v~pg~~f-- 411 (441)
.++ +...++.+++++.+.+.|++.++.+. +.+++++|++++ +.+ ...+...|++++||.+.|+..|
T Consensus 320 -~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~ 397 (467)
T 2oqx_A 320 -DGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLL 397 (467)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHH
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccc
Confidence 111 22345556788899999988788777 678889999983 223 2334677646679999996543
Q ss_pred CC---------CCCCeEEEEee---cCHHHHHHHHHHHHhh
Q 013521 412 GP---------GGNEHIRVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 412 ~~---------~~~~~iRls~~---~~~~~~~~~l~~l~~~ 440 (441)
+. .+.++|||++. .+++++++++++|+++
T Consensus 398 ~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~ 438 (467)
T 2oqx_A 398 GRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438 (467)
T ss_dssp CBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHH
T ss_pred cccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 21 12479999985 7899999999999875
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-26 Score=225.70 Aligned_cols=337 Identities=9% Similarity=0.060 Sum_probs=213.3
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHH-H-HHHH---HHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC-CCCCcEEEc
Q 013521 71 DARLIRLGIGD--TTQP-IPDIIT-S-AMAE---HAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG-IEGDEIFIS 141 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~-~-al~~---~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~-~~~~~I~~t 141 (441)
+..++|+..+. .++. .++.+. + ++.+ .+..... ....| +.....++++.+++++ + ..+++|++|
T Consensus 53 g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~--~~~~~-~~~~~~~la~~la~~~----~~~~~~~v~~~ 125 (449)
T 2cjg_A 53 GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKP--SNSDV-YSVAMARFVETFARVL----GDPALPHLFFV 125 (449)
T ss_dssp CCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCC--CTTTC-CCHHHHHHHHHHHHHH----CCTTCCEEEEE
T ss_pred CcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCC--CCccc-CCHHHHHHHHHHHHhc----CCCCCCEEEEe
Confidence 34678876554 2332 478899 8 9999 6654210 01123 2333456666666665 3 567899999
Q ss_pred CCcHHHHHH-HHHh---cC-----------CCCEEEEeCCCchhhHhHHHHhccc-----cccccccCccceeEEeecCC
Q 013521 142 DGAQSDISR-LQML---LG-----------SNVTVAVQDPSFPAYIDTSVIVGQA-----GKFLKETGKYRNIVYMNCRP 201 (441)
Q Consensus 142 ~G~~~al~~-l~~l---~~-----------~gd~Vlv~~p~y~~~~~~~~~~g~~-----~~~~~~~~~~~~v~~v~~~~ 201 (441)
+|++++++. +..+ .+ +||.|++.+|+|+++...+...+.. ..+.+.. .+++.++.++
T Consensus 126 ~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d 202 (449)
T 2cjg_A 126 EGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFD---WPRIDAPYMR 202 (449)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCC---CCEECCCCCC
T ss_pred CchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCC---CCcEEEcCCC
Confidence 999999987 4322 22 2899999999999875543332211 0011000 1455565543
Q ss_pred --CCC-------------ccCCCCC-CCCccEEEEcCC-CCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC
Q 013521 202 --ENN-------------FFPDLST-TSRTDIIFFCSP-NNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP 263 (441)
Q Consensus 202 --~~~-------------~~~~~~~-~~~~~~v~i~~p-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~ 263 (441)
... +...+.. .+++++|+ ++| +|||| .+++.+++++|.++|++||+++|+||+|.++...+
T Consensus 203 ~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g 281 (449)
T 2cjg_A 203 PGLDEPAMAALEAEALRQARAAFETRPHDIACFV-AEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG 281 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEE-ECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred chhhccccchhhHHHHHHHHHHHHhcCCceEEEE-EeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccC
Confidence 111 1000111 24666655 556 79999 58999999999999999999999999999876654
Q ss_pred CCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc
Q 013521 264 SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 343 (441)
.........-.++ +.||||.+ |+||++++++++..-... .+.........+.+++.+.++.++++..
T Consensus 282 ~~~~~~~~~~~~d----i~t~sK~l-----~iG~~~~~~~~~~~l~~~---~~~~~~~~~t~~~n~~~~~aa~aal~~~- 348 (449)
T 2cjg_A 282 TAWAYQQLDVAPD----IVAFGKKT-----QVCGVMAGRRVDEVADNV---FAVPSRLNSTWGGNLTDMVRARRILEVI- 348 (449)
T ss_dssp SSSTHHHHTCCCS----EEEECGGG-----SSEEEEECGGGGGSTTCT---TTSTTSSCCSSSSCHHHHHHHHHHHHHH-
T ss_pred cceeecccCCCce----EEEecCcc-----cEEEEEECHHHhhhhhhc---ccCCcccccCCCCCHHHHHHHHHHHHHH-
Confidence 3222222221223 33799987 799999998774210000 0111112233457889999888888621
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----C--CeeeCCCCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCC
Q 013521 344 FQALRTVIDYYKENAKIIVDAFQSL----G--LKVNGGKNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGN 416 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~L~~~----g--~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 416 (441)
.+ +.+.++++++++++.+.|+++ . +.... ..|.|++++++.. ...++...+++ +||.+.|+. .
T Consensus 349 ~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g------~ 418 (449)
T 2cjg_A 349 EA--EGLFERAVQHGKYLRARLDELAADFPAVVLDPR-GRGLMCAFSLPTTADRDELIRQLWQ-RAVIVLPAG------A 418 (449)
T ss_dssp HH--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEE-EETTEEEEECSSHHHHHHHHHHHHH-TTEECEEET------T
T ss_pred Hh--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEe-eccEEEEEEECChHHHHHHHHHHHH-CCeEEecCC------C
Confidence 11 345677778888888888753 2 43343 3577888898642 34567777775 599999862 5
Q ss_pred CeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 417 EHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 417 ~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
++||+++ ..+++++++++++|++++
T Consensus 419 ~~iRi~~~~~~t~e~i~~~l~~l~~~l 445 (449)
T 2cjg_A 419 DTVRFRPPLTVSTAEIDAAIAAVRSAL 445 (449)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 7999964 569999999999998763
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=222.02 Aligned_cols=279 Identities=11% Similarity=0.090 Sum_probs=186.4
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGK 190 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~ 190 (441)
+.....++++.+|+ + +.+ +++++|+|+++++.+ +..++++||+|+++.|+|+++...+...|
T Consensus 55 ~~~~~~~~~~~la~-~----g~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G----------- 117 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-H----SDY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQ----------- 117 (446)
T ss_dssp CSSHHHHHHHHHCS-C----TTE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHT-----------
T ss_pred cchHHHHHHHHHHh-c----CCC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcC-----------
Confidence 45556677777777 5 655 789999999999997 67778999999999999999999998888
Q ss_pred cceeEEeec--CCC----CCccC-CCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccC
Q 013521 191 YRNIVYMNC--RPE----NNFFP-DLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITD 262 (441)
Q Consensus 191 ~~~v~~v~~--~~~----~~~~~-~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~ 262 (441)
.+++.++. +++ ..+++ .+ ..++++++++++ +|+||.+++ +++|+++|++||+++|+||+|+. +.+.
T Consensus 118 -~~~~~v~~~~~~~~~~~~~~d~~~l-~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f~ 191 (446)
T 2x3l_A 118 -QEGHFIETHQSPLTNHYNKVNLSRL-NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGLQ 191 (446)
T ss_dssp -CCEEECEEEECTTTSSEEEEEC--------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTST
T ss_pred -CeEEEEeCeeccccCcCCCCCHHHH-cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhccC
Confidence 47777777 432 11222 12 346789999999 566999999 88999999999999999999986 3333
Q ss_pred CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHH-hhhcCCCcHHHHHHH---HHh
Q 013521 263 PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIV-CTCFNGASNIVQAGG---LAC 338 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~---~~~ 338 (441)
+.+.+..... ..+++.|+||+++ ++.++||++++++.+. ...+.... .....+++.....+. ...
T Consensus 192 ~~~~~~~~~g----~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~------~~~~~~~~~~~~~~s~~~~~~aal~~a~~~ 260 (446)
T 2x3l_A 192 GFPDSTLNYQ----ADYVVQSFHKTLP-ALTMGSVLYIHKNAPY------RENIIEYLSYFQTSSPSYLIMASLESAAQF 260 (446)
T ss_dssp TSCCCGGGGT----CSEEEECHHHHSS-SCTTCEEEEEETTCTT------HHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred CCCCChHHcC----CCEEEECCccccc-cccccEEEEEcCCcCC------HHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 3233333332 2389999999764 5556899999888642 11222211 111222333332222 222
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEe-CCCCcCCCCCC
Q 013521 339 LSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTI-PGSGFGPGGNE 417 (441)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~~ 417 (441)
+...+. +++.++.++..+.+.+. |+++..+.++.++|+.+++.+..++.+.|.++ ||.+. +| .+
T Consensus 261 l~~~g~---~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~-GI~v~~~g-------~~ 325 (446)
T 2x3l_A 261 YKTYDS---TLFFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYEGFTGHDIQNWFMNA-HIYLELAD-------DY 325 (446)
T ss_dssp HHHCCC---HHHHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECTTSCHHHHHHHHHHT-TEEESEEC-------SS
T ss_pred HHHhCH---HHHHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeCCcCHHHHHHHHHHC-CCEEEecC-------CC
Confidence 221111 22344444444444444 77776655566899999865667777777766 99997 43 35
Q ss_pred eEEEEee--cCHHHHHHHHHHHHhh
Q 013521 418 HIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 418 ~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
++|+++. .+++++ +++++|+++
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~~ 349 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRKI 349 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHHH
T ss_pred EEEEEeecCCCHHHH-HHHHHHHHH
Confidence 8999974 377888 888888765
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-24 Score=210.85 Aligned_cols=346 Identities=17% Similarity=0.147 Sum_probs=213.4
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHH--HHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhh
Q 013521 54 LFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMA--EHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYK 129 (441)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~--~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~ 129 (441)
...++.+.......+....-...++.|.++...|+.+.+.+. +.+.. +..|.+ ..|..++.+++.+++.+
T Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~la~ 119 (438)
T 1wyu_A 46 PEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTA------YTPYQPEVSQGVLQATFEYQTMIAE 119 (438)
T ss_dssp CHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHC------CSCCSGGGCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhc------CCCCcchhhhhHHHHHHHHHHHHHH
Confidence 344454444444333221124577778777777776644432 22121 122321 34555555555555554
Q ss_pred hCCCCCCcEEEcCCcHHHHHH-HHH-hcCCCCEEEEeCCCchhhHhHHHH----hccccccccccCccceeEEeecCCCC
Q 013521 130 DMGIEGDEIFISDGAQSDISR-LQM-LLGSNVTVAVQDPSFPAYIDTSVI----VGQAGKFLKETGKYRNIVYMNCRPEN 203 (441)
Q Consensus 130 ~~~~~~~~I~~t~G~~~al~~-l~~-l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~v~~v~~~~~~ 203 (441)
.+|.++++|++++|++.+... +.. .+++||+|+++.|+|+.+...++. .| .+++.++.. ++
T Consensus 120 ~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G------------~~v~~v~~~-~~ 186 (438)
T 1wyu_A 120 LAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVG------------AKLLTLPLE-GG 186 (438)
T ss_dssp HHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTT------------CEEEEECCB-TT
T ss_pred HhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCC------------CEEEEEcCc-CC
Confidence 457888899999999955443 222 357899999999999998766543 56 588888862 22
Q ss_pred CccCCCCC-CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccc---ccccccCCCCCcccccCCCcceeE
Q 013521 204 NFFPDLST-TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSA---YAAYITDPSPRSIYEIPGAREVAI 279 (441)
Q Consensus 204 ~~~~~~~~-~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~---~~~~~~~~~~~~~~~~~~~~~~~i 279 (441)
..+++. .+++++|++++| ||||.+.+ +++|+++|++||+++|+|.. ++.+ +.+ ..+ +..+
T Consensus 187 --~~d~~~i~~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~-----~~~-~~~----g~D~ 250 (438)
T 1wyu_A 187 --RTPLPEVGEEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVL-----KPP-GAY----GADI 250 (438)
T ss_dssp --BCCCCCCCTTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTB-----CCH-HHH----TCSE
T ss_pred --ccCHHHhCCCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCc-----CCC-ccC----CCCE
Confidence 233322 367999999999 99999997 88999999999999996622 3211 111 222 2236
Q ss_pred EEecCCcccC----CccceeEEEEeeccccccCCchh-------------------HHHHHHHHhhhcCC--CcHHHHHH
Q 013521 280 EISSFSKFAG----FTGVRLGWTVVPEELRYSNGYPV-------------------IKDFNRIVCTCFNG--ASNIVQAG 334 (441)
Q Consensus 280 ~i~S~SK~~~----~~G~r~G~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~a 334 (441)
++.| +|.|| +.|.|+||++++++++..-.... .+...+....+.+. .+.+...+
T Consensus 251 ~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~ 329 (438)
T 1wyu_A 251 AVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALM 329 (438)
T ss_dssp EEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHH
T ss_pred EEEC-CcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHH
Confidence 6766 66543 45779999999988753210000 01111111111111 12222221
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceE--EEEEcCCCChHHHHHHHHHhcCeEE--eCCC
Q 013521 335 GLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPY--VWVQFPGSSSWDVFAEILEKTHILT--IPGS 409 (441)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~gi~v--~pg~ 409 (441)
+...+...+.+.++++.++++++++++.+.|+++ |+++..+ ..+| +.+.++ .+..++.++|.++ ||.+ .++.
T Consensus 330 aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~~~~~~~~~~~-~~~~~~~~~L~~~-gi~v~~~~~~ 406 (438)
T 1wyu_A 330 GAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTP-KPFFNEFALALP-KDPEAVRRALAER-GFHGATPVPR 406 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSC-SSBCSEEEEECS-SCHHHHHHHHHHT-TCCCCEECCT
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCC-CCeEEEEEEeCC-CCHHHHHHHHHHC-Cceecccccc
Confidence 2111221122346788899999999999999998 9988764 3343 334443 3567788887765 9999 7777
Q ss_pred CcCCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 410 GFGPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 410 ~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
.|. ++++|+++. .+++++++++++|++++
T Consensus 407 ~~~---~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 407 EYG---ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp TSC---SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ccC---CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 654 679999985 58999999999998864
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-24 Score=212.78 Aligned_cols=328 Identities=10% Similarity=0.046 Sum_probs=219.9
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC--CCcEE---EcCCcHHHHHH-HHHhcCC
Q 013521 84 QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE--GDEIF---ISDGAQSDISR-LQMLLGS 157 (441)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~I~---~t~G~~~al~~-l~~l~~~ 157 (441)
.++++.+.+++.+++.. ...+|...++..++++.+.+++.+.++++ +++++ +|+|+++++.+ +..+..+
T Consensus 66 ~~~~~~v~~~l~~~~~~-----~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~ 140 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRK 140 (502)
T ss_dssp CCCCHHHHHHHHHTTTC-----BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcc-----CCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHH
Confidence 34577888888887653 22334445567888888888888767776 66655 48999999887 5555444
Q ss_pred --------CC-----EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEE
Q 013521 158 --------NV-----TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIF 219 (441)
Q Consensus 158 --------gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~ 219 (441)
|+ .|+++.++|..+...++.+| ++++.++++++ ++..|++. .+++++|+
T Consensus 141 ~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~t~~v~ 207 (502)
T 3hbx_A 141 WQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFE------------VELKEVKLSEG-YYVMDPQQAVDMVDENTICVA 207 (502)
T ss_dssp HHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTT------------CEEEEECCBTT-BCSCCHHHHHHHCCTTEEEEE
T ss_pred HhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcC------------ceeEEEecCCC-cCcCCHHHHHHHHhhCCEEEE
Confidence 76 99999999999999999998 58999998753 34444332 36789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHc------CcEEEEccccccccc---CCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKAN------GSIIVYDSAYAAYIT---DPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~~~~~~~---~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
+++|+||||.+.+ +++|.++|+++ |+++++|++|+.+.. .+.... .+. ..+..++..|.+|.++
T Consensus 208 ~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~--~~~-~~~~D~v~~s~hK~l~- 280 (502)
T 3hbx_A 208 AILGSTLNGEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW--DFR-LPLVKSINVSGHKYGL- 280 (502)
T ss_dssp EEBSCTTTCCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC--STT-STTEEEEEEETTTTTC-
T ss_pred EecCCCCCCcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc--ccC-CCCceEEEECcccccC-
Confidence 9999999999988 88888889998 999999999986542 111111 111 2344577889999885
Q ss_pred ccceeEEEEeeccccccCCchhHHHH-HHH-Hhhhc-C---CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKDF-NRI-VCTCF-N---GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDA 364 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (441)
++.++||+++.++............+ ... ..... . ....+.+.+++..+. .+.+..+.++..++++++.+.
T Consensus 281 ~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg---~~g~~~~~~~~~~~a~~l~~~ 357 (502)
T 3hbx_A 281 VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG---HEGYRNVMENCRENMIVLREG 357 (502)
T ss_dssp CCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 77889998886543210000000000 000 00000 0 113344444444443 234577788888899999999
Q ss_pred HHhCC-CeeeCC-CCceEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCCc-CCCCCCeEEEEee--cCHHHHHHHHHH
Q 013521 365 FQSLG-LKVNGG-KNAPYVWVQFPG---SSSWDVFAEILEKTHILTIPGSGF-GPGGNEHIRVSAF--GHREYISEACRR 436 (441)
Q Consensus 365 L~~~g-~~~~~~-~~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f-~~~~~~~iRls~~--~~~~~~~~~l~~ 436 (441)
|++++ +++..+ +..+++++++++ .+..++.+.|. ++||.+...... ...+..++|+++. .++++++.+++.
T Consensus 358 L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~ 436 (502)
T 3hbx_A 358 LEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLR-RYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVID 436 (502)
T ss_dssp HHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHH-TTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred HHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHH-hCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHH
Confidence 99984 888765 577888998864 23346666665 459987532211 1223568999984 378999999998
Q ss_pred HHhh
Q 013521 437 LKNF 440 (441)
Q Consensus 437 l~~~ 440 (441)
|+++
T Consensus 437 L~~~ 440 (502)
T 3hbx_A 437 IEKV 440 (502)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=203.28 Aligned_cols=298 Identities=14% Similarity=0.106 Sum_probs=199.9
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcC--cHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEE
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQG--NMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVA 162 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g--~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vl 162 (441)
++.+.+++.+.+.. +|.+..| ..++|+++|+++ +. ++|++|+|+++++.+ +..+ +++||+|+
T Consensus 11 ~~~v~~a~~~~~~~--------~~~~~~g~~~~~l~~~la~~~----~~--~~v~~~~ggt~al~~~~~~l~~~~gd~Vl 76 (394)
T 1o69_A 11 GGNELKYIEEVFKS--------NYIAPLGEFVNRFEQSVKDYS----KS--ENALALNSATAALHLALRVAGVKQDDIVL 76 (394)
T ss_dssp -CCHHHHHHHHHHH--------TTTSCTTHHHHHHHHHHHHHH----CC--SEEEEESCHHHHHHHHHHHTTCCTTCEEE
T ss_pred CHHHHHHHHHHHHc--------CCccCCChHHHHHHHHHHHHh----CC--CcEEEeCCHHHHHHHHHHHcCCCCCCEEE
Confidence 45677888887753 2545457 899999999997 43 799999999999998 6667 79999999
Q ss_pred EeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC---CccEEEEcCCCCccccCCCHH
Q 013521 163 VQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS---RTDIIFFCSPNNPTGHAATWQ 234 (441)
Q Consensus 163 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~---~~~~v~i~~p~NPtG~~~~~~ 234 (441)
++.|+|+++...+...| .+++.++.+. ++..+++. .+ ++++|++++ |||...+
T Consensus 77 ~~~~~~~~~~~~~~~~g------------~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~-- 137 (394)
T 1o69_A 77 ASSFTFIASVAPICYLK------------AKPVFIDCDE--TYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAK-- 137 (394)
T ss_dssp EESSSCGGGTHHHHHTT------------CEEEEECBCT--TSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC--
T ss_pred ECCCccHHHHHHHHHcC------------CEEEEEEeCC--CCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhh--
Confidence 99999999999998888 5888898873 33333221 12 689999875 8997766
Q ss_pred HHHHHHHHHHHcCcEEEEccccc-ccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee-ccccccCCchh
Q 013521 235 QLKKLVEFAKANGSIIVYDSAYA-AYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP-EELRYSNGYPV 312 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~-~~~~~~~~~~~ 312 (441)
+++|.++|+++|+++|+|++|+ .+.+.+. ....+ .+.++...|.+|.+ +|.|+||++++ +++
T Consensus 138 -l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~~---~~~~~~s~s~~K~l--~~~~~G~~~~~~~~l-------- 201 (394)
T 1o69_A 138 -MDEIVEICKENDIVLIEDAAEALGSFYKNK--ALGTF---GEFGVYSYNGNKII--TTSGGGMLIGKNKEK-------- 201 (394)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---SSEEEEECCTTSSS--CCSSCEEEEESCHHH--------
T ss_pred -HHHHHHHHHHcCCEEEEECcCcccceeCCc--ccccc---cCcEEEEEeCCccC--CCCCceEEEECCHHH--------
Confidence 8899999999999999999998 4444321 11111 12233333446755 56799999996 455
Q ss_pred HHHHHHHHhhhcCC--------------CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC--
Q 013521 313 IKDFNRIVCTCFNG--------------ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK-- 376 (441)
Q Consensus 313 ~~~~~~~~~~~~~~--------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-- 376 (441)
.+.+.......... ++.+...++...+ +++++.+++++++++++.+.|.+. +++.++.
T Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-----~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~ 275 (394)
T 1o69_A 202 IEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM-----EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELEN 275 (394)
T ss_dssp HHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCTT
T ss_pred HHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCC
Confidence 34444432221100 2223332222222 234667788899999999999887 6655432
Q ss_pred --Cce-EEEEEcCCC----------------------ChHHHHHHHHHhcCeEEeCCCCc---CCCCC------------
Q 013521 377 --NAP-YVWVQFPGS----------------------SSWDVFAEILEKTHILTIPGSGF---GPGGN------------ 416 (441)
Q Consensus 377 --~~~-~~~~~~~~~----------------------~~~~~~~~ll~~~gi~v~pg~~f---~~~~~------------ 416 (441)
.++ .+++.++.. +..++.+.|. ++||.+++|... .+...
T Consensus 276 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~ 354 (394)
T 1o69_A 276 SRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK-NKQIETRPLWKAMHTQEVFKGAKAYLNGNSEL 354 (394)
T ss_dssp EECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH-HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHH
T ss_pred CcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH-HcCCcccccCCccccchhhhccCCCCChHHHH
Confidence 222 377777632 3445666655 569999998532 11000
Q ss_pred ---CeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 417 ---EHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 417 ---~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
..+|+.+ ..++++++++++.|+++
T Consensus 355 ~~~~~~~~~~~~~~t~edi~~~~~~l~~~ 383 (394)
T 1o69_A 355 FFQKGICLPSGTAMSKDDVYEISKLILKS 383 (394)
T ss_dssp HHHHEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HhcCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 2345443 35899999999999875
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-24 Score=205.44 Aligned_cols=299 Identities=13% Similarity=0.058 Sum_probs=199.9
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEEe
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAVQ 164 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv~ 164 (441)
++.+.+++.+.+.. . .|.+..+..++|+++|+++ +. +++++|+|+++++.+ +..+ +++||+|+++
T Consensus 16 ~~~~~~a~~~~~~~----~---~~~~~~~~~~l~~~la~~~----~~--~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~ 82 (373)
T 3frk_A 16 EYEIKFKFEEIYKR----N---WFILGDEDKKFEQEFADYC----NV--NYCIGCGNGLDALHLILKGYDIGFGDEVIVP 82 (373)
T ss_dssp HHHHHHHHHHHHHH----T---CCSSSHHHHHHHHHHHHHH----TS--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHC----C---CccCCchHHHHHHHHHHHh----CC--CeEEEeCCHHHHHHHHHHHcCCCCcCEEEEC
Confidence 46677777776653 1 3666788999999999997 44 489999999999987 6777 7999999999
Q ss_pred CCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC---CC--CCCccEEEEcCCCCccccCCCHHHHHHH
Q 013521 165 DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL---ST--TSRTDIIFFCSPNNPTGHAATWQQLKKL 239 (441)
Q Consensus 165 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i 239 (441)
.|+|+++...+...| .+++.++.+++ ++..|+ ++ .+++++|+ |+||||...+ +++|
T Consensus 83 ~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~---l~~i 143 (373)
T 3frk_A 83 SNTFIATALAVSYTG------------AKPIFVEPDIR-TYNIDPSLIESAITEKTKAII---AVHLYGQPAD---MDEI 143 (373)
T ss_dssp TTSCTHHHHHHHHHS------------CEEEEECEETT-TTEECGGGTGGGCCTTEEEEE---EECCTTCCCC---HHHH
T ss_pred CCCcHHHHHHHHHcC------------CEEEEEecccc-ccCcCHHHHHHhcCCCCeEEE---EECCCcCccc---HHHH
Confidence 999999999998888 58888888753 223332 22 35777776 6889999988 8899
Q ss_pred HHHHHHcCcEEEEccccccccc-CCCCCcccccCCCcceeEEEecCC--cccCCccceeEEEEeeccccccCCchhHHHH
Q 013521 240 VEFAKANGSIIVYDSAYAAYIT-DPSPRSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVPEELRYSNGYPVIKDF 316 (441)
Q Consensus 240 ~~~a~~~~~~ii~De~~~~~~~-~~~~~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~ 316 (441)
.++|++||+++|+|++|+.... +. ..+..+ . .+.+.||| |.++.+| +.|+++++++.+ .+.+
T Consensus 144 ~~l~~~~~~~li~D~a~~~g~~~~~--~~~~~~---~--d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~-------~~~~ 208 (373)
T 3frk_A 144 KRIAKKYNLKLIEDAAQAHGSLYKG--MKVGSL---G--DAAGFSFYPAKNLGSLG-DGGAVVTNDKDL-------AEKI 208 (373)
T ss_dssp HHHHHHHTCEEEEECTTCTTCEETT--EETTSS---S--SEEEEECCTTSSSCCSS-SCEEEEESCHHH-------HHHH
T ss_pred HHHHHHcCCEEEEECCcccCCEECC--Eecccc---c--cEEEEeCcCCCccCccc-eeEEEEeCCHHH-------HHHH
Confidence 9999999999999999985332 21 111111 2 27788877 9987325 478988876543 3444
Q ss_pred HHHHhhhc------------CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCce--E-
Q 013521 317 NRIVCTCF------------NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG-KNAP--Y- 380 (441)
Q Consensus 317 ~~~~~~~~------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~--~- 380 (441)
........ ...+.+...++...+ +.+++..++.++..+.+.+.|++.++.+... .++. +
T Consensus 209 ~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 283 (373)
T 3frk_A 209 KALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKL-----KYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWY 283 (373)
T ss_dssp HHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCS
T ss_pred HHHHhcCcccCCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeE
Confidence 43332211 112333332222222 2345666777778888888888766444321 1121 1
Q ss_pred -EEEEcCCCChHHHHHHHHHhcCeEEeCCCCcC----C--------CC---------CCeEEEEe--ecCHHHHHHHHHH
Q 013521 381 -VWVQFPGSSSWDVFAEILEKTHILTIPGSGFG----P--------GG---------NEHIRVSA--FGHREYISEACRR 436 (441)
Q Consensus 381 -~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----~--------~~---------~~~iRls~--~~~~~~~~~~l~~ 436 (441)
+.+..+ +..++.+.|.+ +||.++++.... + .+ .+.+|+++ ..++++++++++.
T Consensus 284 ~~~~~~~--~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~ 360 (373)
T 3frk_A 284 TFVIRSE--KRDELQKYLNN-NGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDK 360 (373)
T ss_dssp SEEEEES--SHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHH
T ss_pred EEEEEeC--CHHHHHHHHHH-CCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHH
Confidence 223332 45566666655 599999775210 0 00 16799997 4489999999999
Q ss_pred HHhh
Q 013521 437 LKNF 440 (441)
Q Consensus 437 l~~~ 440 (441)
|++.
T Consensus 361 l~~~ 364 (373)
T 3frk_A 361 INAW 364 (373)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 9875
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-23 Score=198.04 Aligned_cols=299 Identities=17% Similarity=0.151 Sum_probs=205.0
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEE
Q 013521 86 IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAV 163 (441)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv 163 (441)
.++.+.+++.+.+.. . .|.+..+..++++++|+++ +. +++++|+|+++++.+ +..+ +++||+|++
T Consensus 14 ~~~~v~~a~~~~~~~----~---~~~~~~~~~~l~~~la~~~----~~--~~~~~~~sGt~al~~al~~~~~~~gd~Vi~ 80 (367)
T 3nyt_A 14 IKDKIDAGIQRVLRH----G---QYILGPEVTELEDRLADFV----GA--KYCISCANGTDALQIVQMALGVGPGDEVIT 80 (367)
T ss_dssp HHHHHHHHHHHHHHH----C---CCSSCHHHHHHHHHHHHHH----TC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCHHHHHHHHHHHhc----C---CccCChHHHHHHHHHHHHh----CC--CcEEEeCCHHHHHHHHHHHhCCCCcCEEEE
Confidence 456677777776653 1 3556778999999999997 44 389999999999987 6667 799999999
Q ss_pred eCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC---CC--CCCccEEEEcCCCCccccCCCHHHHHH
Q 013521 164 QDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL---ST--TSRTDIIFFCSPNNPTGHAATWQQLKK 238 (441)
Q Consensus 164 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~ 238 (441)
+.|+|+++...+...| .+++.++++++. +..++ ++ .+++++|+ |+||||...+ +++
T Consensus 81 ~~~~~~~~~~~~~~~G------------~~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~---~~~ 141 (367)
T 3nyt_A 81 PGFTYVATAETVALLG------------AKPVYVDIDPRT-YNLDPQLLEAAITPRTKAII---PVSLYGQCAD---FDA 141 (367)
T ss_dssp ESSSCTHHHHHHHHTT------------CEEEEECBCTTT-CSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHH
T ss_pred CCCccHHHHHHHHHcC------------CEEEEEecCCcc-CCcCHHHHHHhcCcCCcEEE---eeCCccChhh---HHH
Confidence 9999999999999888 589999987652 23332 22 35777766 7899998877 888
Q ss_pred HHHHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecC--CcccCCccceeEEEEeeccccccCCchhHHH
Q 013521 239 LVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSF--SKFAGFTGVRLGWTVVPEELRYSNGYPVIKD 315 (441)
Q Consensus 239 i~~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~ 315 (441)
|.++|++||+++|+|++|+... +++ ..+..+ . ++.+.|| +|.++.+|. .|+++++++.+ .+.
T Consensus 142 i~~la~~~~~~li~D~a~~~g~~~~~--~~~~~~---~--di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l-------~~~ 206 (367)
T 3nyt_A 142 INAIASKYGIPVIEDAAQSFGASYKG--KRSCNL---S--TVACTSFFPSAPLGCYGD-GGAIFTNDDEL-------ATA 206 (367)
T ss_dssp HHHHHHHTTCCBEEECTTTTTCEETT--EETTSS---S--SEEEEECCTTSSSCCSSC-CEEEEESCHHH-------HHH
T ss_pred HHHHHHHcCCEEEEECccccCCeECC--eeccCC---C--CEEEEECCCCCcCCCcCc-eeEEEeCCHHH-------HHH
Confidence 9999999999999999998532 222 112112 1 3888887 899985476 89999865543 344
Q ss_pred HHHHHhh------------hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-C---c-
Q 013521 316 FNRIVCT------------CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK-N---A- 378 (441)
Q Consensus 316 ~~~~~~~------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~---~- 378 (441)
+...... .....+.+...++.+.++ .++...++.+++++.+.+.|++.++.+.... + .
T Consensus 207 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~-----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 281 (367)
T 3nyt_A 207 IRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLE-----IFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVY 281 (367)
T ss_dssp HHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCC
T ss_pred HHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceee
Confidence 4443322 122345555544444442 2355666777778888888888765543221 1 1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhcCeEEeCCCC--------cC-CC---------CCCeEEEEee--cCHHHHHHHHHHHH
Q 013521 379 PYVWVQFPGSSSWDVFAEILEKTHILTIPGSG--------FG-PG---------GNEHIRVSAF--GHREYISEACRRLK 438 (441)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~--------f~-~~---------~~~~iRls~~--~~~~~~~~~l~~l~ 438 (441)
..+++.++ +..++.+.|.+ +||.++++.. |. .. ....+||++. .++++++..++.|+
T Consensus 282 ~~~~~~~~--~~~~l~~~L~~-~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~ 358 (367)
T 3nyt_A 282 AQYTVRMD--NRESVQASLKA-AGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALT 358 (367)
T ss_dssp SSEEEECS--SHHHHHHHHHH-HTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEeC--CHHHHHHHHHH-CCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHH
Confidence 22445554 45566666554 5999987653 11 00 0256999974 38999999999987
Q ss_pred h
Q 013521 439 N 439 (441)
Q Consensus 439 ~ 439 (441)
+
T Consensus 359 ~ 359 (367)
T 3nyt_A 359 N 359 (367)
T ss_dssp C
T ss_pred H
Confidence 5
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-22 Score=197.11 Aligned_cols=285 Identities=11% Similarity=0.099 Sum_probs=189.4
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHH-hccccccccccCc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVI-VGQAGKFLKETGK 190 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~ 190 (441)
.+-..++++.+|+++ +. +++++++|+++++++ +..++++||+|+++.|.|++....+.. +...|
T Consensus 81 ~p~~~~le~~lA~l~----g~--~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G-------- 146 (415)
T 2fq6_A 81 TLTHFSLQQAMCELE----GG--AGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG-------- 146 (415)
T ss_dssp CHHHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGT--------
T ss_pred CchHHHHHHHHHHHh----CC--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC--------
Confidence 345678999999986 54 356777888999987 677889999999999999988766532 11112
Q ss_pred cceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCC
Q 013521 191 YRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDPSPR 266 (441)
Q Consensus 191 ~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~--~~~~ii~De~~~~~~~~~~~~ 266 (441)
++++.++.++- .++++ .+++++|++++|+||||.+++ +++|+++|++ ||+++|+|++|+..... .
T Consensus 147 -~~v~~v~~~d~----~~le~ai~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~---~ 215 (415)
T 2fq6_A 147 -VTTSWFDPLIG----ADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF---K 215 (415)
T ss_dssp -CEEEEECTTCG----GGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS---C
T ss_pred -cEEEEECCCCH----HHHHHhhccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccC---C
Confidence 47888876421 12222 367899999999999999998 8899999999 99999999999854321 1
Q ss_pred cccccCCCcceeEEEecCCcccCCccce-eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 267 SIYEIPGAREVAIEISSFSKFAGFTGVR-LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 267 ~~~~~~~~~~~~i~i~S~SK~~~~~G~r-~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
++ .+ +.++++.|+||.+|.+|.+ .||+++++++ ++.+...........++.....+... .+
T Consensus 216 p~-~~----g~Div~~S~sK~lg~~g~~~~G~l~~~~~~--------~~~l~~~~~~~G~~~~~~~a~~~~~~-----l~ 277 (415)
T 2fq6_A 216 AL-DF----GIDVSIQAATKYLVGHSDAMIGTAVCNARC--------WEQLRENAYLMGQMVDADTAYITSRG-----LR 277 (415)
T ss_dssp GG-GG----TCSEEEEETTTTTTCSSSCCCEEEEECTTT--------HHHHHHHHHHTTCCCCHHHHHHHHHH-----HH
T ss_pred cc-cc----CCeEEEEeCccccCCCCCceEEEEEeCHHH--------HHHHHHHHHhcCCCCCHHHHHHHHhh-----hh
Confidence 22 22 3459999999999977755 6999988765 34555444332333344433322222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCe-e-eCC---------------CCceEEEEEcCCCChHHHHHHHHHh---cCeE
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSL-GLK-V-NGG---------------KNAPYVWVQFPGSSSWDVFAEILEK---THIL 404 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~---------------~~~~~~~~~~~~~~~~~~~~~ll~~---~gi~ 404 (441)
.+..+.+...++.+.+.+.|++. .+. + ++. ..+..+++.+++....+....+++. .++.
T Consensus 278 ~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a 357 (415)
T 2fq6_A 278 TLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMA 357 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEe
Confidence 45566677788888888888876 332 1 110 1466789999752112223344433 3456
Q ss_pred EeCCCCcC-------------------CCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 405 TIPGSGFG-------------------PGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 405 v~pg~~f~-------------------~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
++.|+.+. ...++.||||++. ++++++.+.+.|+++
T Consensus 358 ~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 358 YSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI 414 (415)
T ss_dssp SCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred ccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence 66563311 1124799999854 567788888888765
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=208.69 Aligned_cols=303 Identities=11% Similarity=0.065 Sum_probs=197.7
Q ss_pred cHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhH--hHHHHhccccccccccCccce
Q 013521 116 NMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRN 193 (441)
Q Consensus 116 ~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~ 193 (441)
..++.+++++.+.+.++.+ +.|++|+|++++++++..++++||+|++.+++|++.. ..+...|.. .+
T Consensus 33 ~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~----------~~ 101 (379)
T 3ke3_A 33 FQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQLTIDEDCLIIRNGWFSYRWTQILEKGKFA----------KS 101 (379)
T ss_dssp HHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHHCTTCEEEEEECSHHHHHHHHHHHHHCCS----------SE
T ss_pred HHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhCCCCCeEEEEeCCchhHHHHHHHHHhCCC----------Cc
Confidence 3455556666555545666 7899999999999986566789999999999998753 233334410 25
Q ss_pred eEEeecCCCC------Cc-cCCCCC------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 194 IVYMNCRPEN------NF-FPDLST------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 194 v~~v~~~~~~------~~-~~~~~~------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
++.++.+..+ .+ ..+++. .+++++|++++++||||.+++.+++++|.++|++||+++|+|++++ .
T Consensus 102 ~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g- 179 (379)
T 3ke3_A 102 STVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G- 179 (379)
T ss_dssp EEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T-
T ss_pred eEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C-
Confidence 6666654311 11 123221 1378999988999999999999999999999999999999999976 2
Q ss_pred cCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc----CC-chh--HHHHH----HHHhh---hcCC
Q 013521 261 TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS----NG-YPV--IKDFN----RIVCT---CFNG 326 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~----~~-~~~--~~~~~----~~~~~---~~~~ 326 (441)
..+..+... +.++++.|++|.++ .+.++|+++++++++.. .. ... ...+. ..... ...+
T Consensus 180 --~~~~~~~~~----~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t 252 (379)
T 3ke3_A 180 --CVWLDMKEL----GIDVLISAPQKGWS-STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHAT 252 (379)
T ss_dssp --TCCCCHHHH----TCSEEEECTTTTTC-SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSC
T ss_pred --Ccccccccc----CCCEEEecchhhcC-CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCC
Confidence 223333322 33588999999986 55569999998876311 00 000 00011 11111 0124
Q ss_pred CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCC--ceE-EEEEcCCCChHHHHHHHHHhcCe
Q 013521 327 ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKN--APY-VWVQFPGSSSWDVFAEILEKTHI 403 (441)
Q Consensus 327 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ll~~~gi 403 (441)
.+...+.++.++++......+++++++++++++++.+.|+++|+++..++. +.. ..+..++ ....... .|+++||
T Consensus 253 ~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~-~L~~~Gi 330 (379)
T 3ke3_A 253 MPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTER-DDMHKGS-AFAEAGL 330 (379)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSC-HHHHSSH-HHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCC-cchHHHH-HHHHCCe
Confidence 566666655555541111125788889999999999999998888765432 333 3334332 1122234 4456699
Q ss_pred EEeCCCCcC---CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 404 LTIPGSGFG---PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 404 ~v~pg~~f~---~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+.+|..+. +...+.||+++ ..+++++++++++|+++
T Consensus 331 ~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~ 372 (379)
T 3ke3_A 331 QIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKA 372 (379)
T ss_dssp CCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHH
T ss_pred EEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence 999998664 23368999997 34789999999998875
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-23 Score=204.40 Aligned_cols=287 Identities=16% Similarity=0.129 Sum_probs=179.0
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHh----HHHHhcccccccc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYID----TSVIVGQAGKFLK 186 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~ 186 (441)
+.+...+|++.+|+++ +.+ ..++++++++|+.+ +..++++||+|+++.|+|.+... .+...|
T Consensus 80 ~~p~~~~le~~lA~l~----g~~--~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G------- 146 (430)
T 3ri6_A 80 SNPTVEDLEQRLKNLT----GAL--GVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFG------- 146 (430)
T ss_dssp CCHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTT-------
T ss_pred CCHHHHHHHHHHHHHH----CCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcC-------
Confidence 3456788899999886 443 34445555688886 67789999999999999999877 445666
Q ss_pred ccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC
Q 013521 187 ETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS 264 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~ 264 (441)
.+++.++.++- .++++ .+++++|++++|+||||.+++ +++|+++|+++|+++|+|++|.......
T Consensus 147 -----~~~~~v~~~d~----~~l~~ai~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~- 213 (430)
T 3ri6_A 147 -----IEVRFVDVMDS----LAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE- 213 (430)
T ss_dssp -----CEEEEECTTCH----HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC-
T ss_pred -----CEEEEeCCCCH----HHHHHhhCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 58888877521 11221 358999999999999999998 7889999999999999999998533211
Q ss_pred CCcccccCCCcceeEEEecCCcccCCccceeEEEEe-ecc--cccc-CCch---------hHHHHH-HHHhhhcCCCcHH
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV-PEE--LRYS-NGYP---------VIKDFN-RIVCTCFNGASNI 330 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~-~~~--~~~~-~~~~---------~~~~~~-~~~~~~~~~~~~~ 330 (441)
+ ... +.++++.|+||.++.+|..+|.+++ +.+ +... +... ++.... ..........++.
T Consensus 214 ~---~~~----g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~ 286 (430)
T 3ri6_A 214 A---KRL----GVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPH 286 (430)
T ss_dssp G---GGG----TCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHH
T ss_pred h---HHc----CCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHH
Confidence 1 111 2358999999999866655555554 222 1100 0000 011111 1112222223333
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eeCCC----------------CceEEEEEcCCCCh-H
Q 013521 331 VQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK-VNGGK----------------NAPYVWVQFPGSSS-W 391 (441)
Q Consensus 331 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~~~-~ 391 (441)
.... .+ .+.+.+..+.++..++++.+.+.|+++ +++ +..|. +|+.+|+++++... .
T Consensus 287 ~a~l---~l--~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~ 361 (430)
T 3ri6_A 287 NAYL---QS--LGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASY 361 (430)
T ss_dssp HHHH---HH--HHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHH
T ss_pred HHHH---HH--hhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHH
Confidence 3221 12 234555666777788999999999887 554 33222 33489999973111 2
Q ss_pred HHHHHHHHhcCeEEeCCCCcCC---------------------CCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 392 DVFAEILEKTHILTIPGSGFGP---------------------GGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 392 ~~~~~ll~~~gi~v~pg~~f~~---------------------~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
.++.. ++..++.+.+|..|.. ..+++||||++. |+.+++++.|++
T Consensus 362 ~~~~~-l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~--E~~~dl~~dl~~ 427 (430)
T 3ri6_A 362 RFMDA-LKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI--EEIEDLKEDILQ 427 (430)
T ss_dssp HHHHH-CSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS--SCHHHHHHHHHH
T ss_pred HHHHh-CCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHH
Confidence 22222 3334667778876641 246899999864 333334444443
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-24 Score=213.46 Aligned_cols=292 Identities=15% Similarity=0.122 Sum_probs=194.9
Q ss_pred cHHHHHHHHHHHhhhCCCCCCcEEEcCCcH-HHHHH-HHHhcC--CCCEEEEeCCCchhhHhHHHHhccccccccccCcc
Q 013521 116 NMALRTAIADKFYKDMGIEGDEIFISDGAQ-SDISR-LQMLLG--SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191 (441)
Q Consensus 116 ~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~-~al~~-l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 191 (441)
..++.+++.+++.+.+|++++ +++|+|++ .++.+ +..+.. +|+.|++++++|+++...++..|
T Consensus 131 ~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G------------ 197 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVG------------ 197 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcC------------
Confidence 455666666666666688776 99999999 45443 433322 67889999999999998888888
Q ss_pred ceeEEeecCC-CCCccCCCCC----------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 192 RNIVYMNCRP-ENNFFPDLST----------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 192 ~~v~~v~~~~-~~~~~~~~~~----------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
.+++.++..+ +.++..|++. ..++.+|++++|+||||.+.+ +++|.++|+++|+++++|++|+.+.
T Consensus 198 ~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~ 274 (456)
T 2z67_A 198 MNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQN 274 (456)
T ss_dssp CEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred CCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHH
Confidence 5777777631 1223333221 136677778899999999988 8899999999999999999998654
Q ss_pred cCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee-ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhc
Q 013521 261 TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL 339 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 339 (441)
.+..+.....+.+ +..+++.|++|.++ ++.++||++++ +++ .+.+...........+.+.+.+++..+
T Consensus 275 ~g~~~~~~~~~~~--~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~--------~~~l~~~~~g~~~~~~~~~~~aal~~l 343 (456)
T 2z67_A 275 NYYLEKLKKAFKY--RVDAVVSSSDKNLL-TPIGGGLVYSTDAEF--------IKEISLSYPGRASATPVVNTLVSLLSM 343 (456)
T ss_dssp HHHHHHHHHHHTS--CCSEEEEEHHHHHC-CCSSCEEEEESCHHH--------HHHHHTTSCSCBCSHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhhCC--CCCEEEEcCCCCcC-CCCCeEEEEEcCHHH--------HhhcCcCCCCCCCCCHHHHHHHHHHHH
Confidence 3211111111221 22378899999875 67899999995 444 233321111111112234444444444
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEc--CCCChHHHHHHHHHhcCe---EEe----
Q 013521 340 SPDGFQALRTVIDYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQF--PGSSSWDVFAEILEKTHI---LTI---- 406 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~gi---~v~---- 406 (441)
. ...++++.++.+++++++.+.|++. |+.+.+++ +++++.+ ++. ..++...|.++ || .+.
T Consensus 344 ~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--~~v~~~~~~~~~-~~~l~~~L~~~-gi~~~rv~~~~g 416 (456)
T 2z67_A 344 G---SKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--SPIASCISVNSD-PVEIAAKLYNL-RVTGPRGIKKTD 416 (456)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--CSSEEEEECSSC-HHHHHHHHHHT-TEESCEEECTTC
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--CeEEEEEecccH-HHHHHHHHHHc-CCCcceEEeecC
Confidence 2 3456888899999999999999887 87776654 6677777 432 35677776655 65 443
Q ss_pred --CCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 407 --PGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 407 --pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
+|..|.....+++|+++. .+++++++++++|++++
T Consensus 417 ~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 417 HFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 234443334579999974 58999999999998864
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-23 Score=198.64 Aligned_cols=313 Identities=15% Similarity=0.131 Sum_probs=207.8
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHH-HHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh
Q 013521 77 LGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAI-ADKFYKDMGIEGDEIFISDGAQSDISR-LQML 154 (441)
Q Consensus 77 l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i-a~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l 154 (441)
...+.|++++++.+.+++.+.+.. ..+..| .....++++++ |+++ + ..+++++++|+++++.+ +..+
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~----~~~~~~--~~~~~~l~~~~~a~~~----g-~~~~~v~~~sgt~al~~al~~l 73 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDAS----HIYTNY--GPINQRFEQTIMSGFF----Q-NRGAVTTVANATLGLMAAIQLK 73 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHH----TCCSSS--CHHHHHHHHHHHHHTS----T-TCSEEEEESCHHHHHHHHHHHH
T ss_pred eeccCCCCCCcHHHHHHHHHHHHc----CCcccC--CHHHHHHHHHHHHHHh----C-CCCeEEEeCCHHHHHHHHHHHc
Confidence 445688899999999999998874 222223 34578999999 9985 4 35788999999999987 6676
Q ss_pred -cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCC--ccEEEEcCCCC
Q 013521 155 -LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSR--TDIIFFCSPNN 225 (441)
Q Consensus 155 -~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~--~~~v~i~~p~N 225 (441)
+++||+|+++.|+|+++...+...| .+++.++++++ ++..|++. .++ +++|+ |+|
T Consensus 74 ~~~~Gd~Vi~~~~~~~~~~~~~~~~G------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~tk~v~---~~~ 137 (377)
T 3ju7_A 74 KRKKGKYALMPSFTFPATPLAAIWCG------------LEPYFIDISID-DWYMDKTVLWDKIEELKEEVAIVV---PYA 137 (377)
T ss_dssp SCTTCCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCSBCHHHHHHHHHHHGGGEEEEC---CBC
T ss_pred CCCCcCEEEECCCCcHHHHHHHHHcC------------CEEEEEecCCc-cCCcCHHHHHHHHhcCCCCceEEE---EEC
Confidence 8999999999999999999999888 58999998753 44444332 234 77766 678
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc-cccCCCcceeEEEec--CCcccCCccceeEEEEeec
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI-YEIPGAREVAIEISS--FSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~-~~~~~~~~~~i~i~S--~SK~~~~~G~r~G~l~~~~ 302 (441)
|||...+ +++|.++|+ ||++||+|++|+...... ..++ ..+ .+ +.+.| .+|.++ +| +.|++++++
T Consensus 138 ~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~-~~~~g~~~---~d--~~~~S~~~~K~l~-~g-~gG~~~~~~ 205 (377)
T 3ju7_A 138 TFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNG-GMHYGQDF---SG--MIIYSFHATKPFG-IG-EGGLIYSKN 205 (377)
T ss_dssp GGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEET-TEETTTTC---SS--EEEEECBTTSSSC-CB-SCEEEEESC
T ss_pred CCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeEC-CEeccCCC---Cc--EEEEECCCCCcCC-CC-CcEEEEECC
Confidence 9999988 778888899 999999999998532211 1111 111 23 44555 469998 45 678888876
Q ss_pred cccccCCchhHHHHHHHHhhh------------cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-
Q 013521 303 ELRYSNGYPVIKDFNRIVCTC------------FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG- 369 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 369 (441)
+.+ .+++..++... ....+.+....+...+ +.++...++.+++++.+.+.|++++
T Consensus 206 ~~l-------~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l-----~~l~~~~~~~~~~~~~~~~~L~~~~~ 273 (377)
T 3ju7_A 206 EED-------IQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATM-----KKWDDKLKERTRISEWYKQLLQSNGL 273 (377)
T ss_dssp HHH-------HHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHH-------HHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 553 44555444321 1224444433333333 3346666777778888888888773
Q ss_pred --CeeeCCCC--c--eEEEEEcCCCC-hHHHHHHHHHhcCeEEeCCC--CcCC--------C---------CCCeEEEEe
Q 013521 370 --LKVNGGKN--A--PYVWVQFPGSS-SWDVFAEILEKTHILTIPGS--GFGP--------G---------GNEHIRVSA 423 (441)
Q Consensus 370 --~~~~~~~~--~--~~~~~~~~~~~-~~~~~~~ll~~~gi~v~pg~--~f~~--------~---------~~~~iRls~ 423 (441)
+.+.+... . .|+.+.++... .+++.+.| +++||.++.+. .+.. . ..+.|||.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~ 352 (377)
T 3ju7_A 274 MKKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDL-KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPL 352 (377)
T ss_dssp TTTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHH-HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECC
T ss_pred ccccccCCCCCcceEEEEEEEeCChhhHHHHHHHH-HHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCC
Confidence 22322111 1 23456666322 45555555 55699998775 2210 0 025699997
Q ss_pred ec--CHHHHHHHHHHHHhhC
Q 013521 424 FG--HREYISEACRRLKNFL 441 (441)
Q Consensus 424 ~~--~~~~~~~~l~~l~~~l 441 (441)
.. ++++++..++.|++++
T Consensus 353 ~~~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 353 WEGMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp CTTCCHHHHHHHHHHHTC--
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 43 7899999999998764
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=208.96 Aligned_cols=322 Identities=10% Similarity=-0.010 Sum_probs=212.6
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC---------CcEEEcCCcHHHHHH-HHHhc
Q 013521 86 IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG---------DEIFISDGAQSDISR-LQMLL 155 (441)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~---------~~I~~t~G~~~al~~-l~~l~ 155 (441)
++..+.+++...+. .....|....+..++++++++|+.+.+|.+. .++++|+|+++++.+ +..+.
T Consensus 86 ~~~~~~~~~~~~~n-----~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~ 160 (486)
T 1js3_A 86 YPAMLADMLCGAIG-----CIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (486)
T ss_dssp HHHHHHHHHHHHHC-----CCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----cCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH
Confidence 34556677777663 3345676666788999999999988667654 468999999999876 44332
Q ss_pred C---C------CC----------EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----
Q 013521 156 G---S------NV----------TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST----- 211 (441)
Q Consensus 156 ~---~------gd----------~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~----- 211 (441)
+ + || .|+++.++|+++...++..| ++++.+|++. ++..|++.
T Consensus 161 ~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G------------~~v~~v~~d~--~~~~d~~~L~~~i 226 (486)
T 1js3_A 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGG------------VKLKAIPSDG--KFAMRASALQEAL 226 (486)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHT------------CEEEEECCCT--TSCCCHHHHHHHH
T ss_pred HHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCC------------CceEEeecCC--CCCCCHHHHHHHH
Confidence 1 1 32 37889999999999999999 5899999864 33344322
Q ss_pred CCCc------cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcc-cccCCCcceeEEEec
Q 013521 212 TSRT------DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSI-YEIPGAREVAIEISS 283 (441)
Q Consensus 212 ~~~~------~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~-~~~~~~~~~~i~i~S 283 (441)
.+++ .+|++++|+||||.+-+ +++|+++|++||+++++|++|+.+.... ..... ..+ .+..++..|
T Consensus 227 ~~~~~~g~~p~~vv~~~~~n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~---~~adsi~~~ 300 (486)
T 1js3_A 227 ERDKAAGLIPFFVVATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV---EFADSFNFN 300 (486)
T ss_dssp HHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTG---GGCSEEEEC
T ss_pred HHHHhCCCCceEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCc---cccCeeEEc
Confidence 1222 38888899999998866 9999999999999999999999755421 11111 112 122356678
Q ss_pred CCcccCCccceeEEEEeecccc-ccCCchhHHHHHHHHhh--------------hcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 284 FSKFAGFTGVRLGWTVVPEELR-YSNGYPVIKDFNRIVCT--------------CFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 284 ~SK~~~~~G~r~G~l~~~~~~~-~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
++|+++. .+++||++++++.. .... .....+...... .......+.+.+++..+ +.+.++
T Consensus 301 ~hK~~~~-p~~~G~l~~~~~~~l~~~~-~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~---g~~g~~ 375 (486)
T 1js3_A 301 PHKWLLV-NFDCSAMWVKRRTDLTGAF-KLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY---GVKGLQ 375 (486)
T ss_dssp HHHHSSC-CSSCEEEEESCHHHHHGGG-C------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH---HHHHHH
T ss_pred hhhhcCC-CcceEEEEEeCHHHHHHHh-cCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHH---hHHHHH
Confidence 9999985 48999999976532 1100 000000000000 00012344555555444 345678
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcCCCC--hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-
Q 013521 349 TVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGSS--SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF- 424 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~- 424 (441)
++.++..++++++.+.|++. |+++..++...++.+.+++.+ ..++.+.+.++ |+.+.++..|. +.+++|+++.
T Consensus 376 ~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~--~~~~lRi~~~~ 452 (486)
T 1js3_A 376 AYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSA-RKIHLVPCRLR--GQFVLRFAICS 452 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHH-TSCBCEEEEET--TEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhc-CCEEEEEEEEC--CEEEEEEEeCC
Confidence 88899999999999999987 888865445566666775321 45677777666 65543333332 3679999973
Q ss_pred --cCHHHHHHHHHHHHhh
Q 013521 425 --GHREYISEACRRLKNF 440 (441)
Q Consensus 425 --~~~~~~~~~l~~l~~~ 440 (441)
.+++++++++++|+++
T Consensus 453 ~~~t~~di~~~~~~l~~~ 470 (486)
T 1js3_A 453 RKVESGHVRLAWEHIRGL 470 (486)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 3688999999999875
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=206.70 Aligned_cols=329 Identities=10% Similarity=0.107 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHHHHHH-HHH----hc---
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG-DEIFISDGAQSDISR-LQM----LL--- 155 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~al~~-l~~----l~--- 155 (441)
+.++.+.+++.....+ .....|.......++.+++.+|+.+.++.++ +++++|+|+++++.+ +.. ++
T Consensus 111 ~~~~~v~~~~~~~~~n----~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~ 186 (497)
T 2qma_A 111 PLMPAVAAEAMIAALN----QSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKL 186 (497)
T ss_dssp CBHHHHHHHHHHHHHC----CCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhc----ccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhh
Confidence 4567777777665443 2334465555778888888888877677765 899999999999886 443 23
Q ss_pred ------CC------CC-EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C----C
Q 013521 156 ------GS------NV-TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T----S 213 (441)
Q Consensus 156 ------~~------gd-~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~----~ 213 (441)
.+ |+ .|+++.++|.++...+..+|. |. .+++.+|.+.+. ..|++. . .
T Consensus 187 ~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~-g~--------~~v~~v~~~~~~--~~d~~~L~~~i~~~~~~ 255 (497)
T 2qma_A 187 SGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGL-GE--------KAVMTVDANADG--TMDITKLDEVIAQAKAE 255 (497)
T ss_dssp HCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTS-CG--------GGEEEECBCTTS--SBCGGGHHHHHHHHHHT
T ss_pred cccchhhcccccccCCeEEEECCCchHHHHHHHHHcCC-Cc--------ccEEEEecCCCC--cCCHHHHHHHHHHHHHC
Confidence 12 46 899999999999988888873 10 168888886533 333332 1 1
Q ss_pred Ccc--EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 214 RTD--IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 214 ~~~--~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++ +|++++++||||.+.+ +++|+++|++||+++++|++|+.+........ .+.+.....+++.|++|+++.
T Consensus 256 ~~~~~~vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~--~~~gi~~~D~i~~s~hK~l~~- 329 (497)
T 2qma_A 256 GLIPFAIVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSSHKS--RLKGVERAHSISVDFHKLFYQ- 329 (497)
T ss_dssp TCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG--GGTTGGGCSEEEEETTTTTCC-
T ss_pred CCcceEEEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCcchH--hhcCcccCCEEEEcchhccCC-
Confidence 233 7788899999999888 88999999999999999999997655322111 122222334778899999874
Q ss_pred cceeEEEEeeccccccCCchhHHHHHHHHh----hhcC------CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVC----TCFN------GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
+.++|+++++++............+..... .... ....+.+.+++..+. .+.++++.++..++++++
T Consensus 330 p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg---~~g~~~~~~~~~~~a~~l 406 (497)
T 2qma_A 330 TISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG---PKALGDMYDHLLAQTLEV 406 (497)
T ss_dssp CSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHH
Confidence 479999998766521100000000000000 0000 001233333444443 455678888889999999
Q ss_pred HHHHHhC-CCeeeCCCCceEEEEEcCCCC------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe---ecCHHHHH
Q 013521 362 VDAFQSL-GLKVNGGKNAPYVWVQFPGSS------SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA---FGHREYIS 431 (441)
Q Consensus 362 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~---~~~~~~~~ 431 (441)
.+.|++. ++++..++.+.++++++.+.. ..++...+.++ |+.+.++..+. +.+++|+++ ..++++++
T Consensus 407 ~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~-G~~~~~~~~~~--g~~~lRis~~~~~~t~edi~ 483 (497)
T 2qma_A 407 ADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTR-GIAVLGETIVD--GKTALKFTILNPCLTTSDFE 483 (497)
T ss_dssp HHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHH-TSCBCEEEEET--TEEEEEEECCCTTCCHHHHH
T ss_pred HHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhC-CCEEEEeeEEC--CEEEEEEEecCCCCCHHHHH
Confidence 9999987 888755456678888886321 12344555554 98887654442 356899997 35899999
Q ss_pred HHHHHHHhh
Q 013521 432 EACRRLKNF 440 (441)
Q Consensus 432 ~~l~~l~~~ 440 (441)
+++++|+++
T Consensus 484 ~~~~~l~~~ 492 (497)
T 2qma_A 484 SLLSKINML 492 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=203.96 Aligned_cols=323 Identities=9% Similarity=0.056 Sum_probs=213.5
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC--CCcEEEcCCcHHHHHH-HHHhcC-------
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISR-LQMLLG------- 156 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~I~~t~G~~~al~~-l~~l~~------- 156 (441)
+..+.+.+..++. .....|....+..++++++++|+.+.+|.+ ++.+++|+|+++++.. +..+.+
T Consensus 109 ~~~~~e~l~~~~~-----~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 183 (511)
T 3vp6_A 109 IGLAGEWLTSTAN-----TNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVK 183 (511)
T ss_dssp HHHHHHHHHHHHC-----CCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhc-----cCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhh
Confidence 3444566666664 445578778899999999999998866665 5799999999999875 444432
Q ss_pred -------CCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--------CCCccEEEE
Q 013521 157 -------SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--------TSRTDIIFF 220 (441)
Q Consensus 157 -------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--------~~~~~~v~i 220 (441)
+++.|+++.++|+++...++.+|... .+++.++.+.++.++++ +++ ...+++|++
T Consensus 184 ~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~---------~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~ 254 (511)
T 3vp6_A 184 TKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNA 254 (511)
T ss_dssp HHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hcCcccCCCeEEEECCCchHHHHHHHHHcCCCC---------CcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 57799999999999999999988310 17888888754332222 221 122788999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
++|+||||.+-+ +++|+++|++||+++++|++|+......... -..+.+.....+++.+++|+++ ....+|++++
T Consensus 255 ~~~~~~~G~vd~---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~-~~~~~g~~~aDsv~~~~hK~l~-~p~g~g~l~~ 329 (511)
T 3vp6_A 255 TAGTTVYGAFDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKH-RHKLNGIERANSVTWNPHKMMG-VLLQCSAILV 329 (511)
T ss_dssp EBSCSSSCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTT-GGGGTTGGGCSEEEECTTSTTC-CCSCCEEEEE
T ss_pred ecCCCCCccccc---HHHHHHHHHHcCCEEEEEccchhhHhhChhh-hhhccCCccCCEEEECcccccC-CCcCeEEEEE
Confidence 999999999977 8999999999999999999998654422110 0111222223477889999997 4478999988
Q ss_pred eccccccCCchhHHHHHHHH-hh-----------------hcC---CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 013521 301 PEELRYSNGYPVIKDFNRIV-CT-----------------CFN---GASNIVQAGGLACLSPDGFQALRTVIDYYKENAK 359 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (441)
+++.+ ........ .. ... ....+...+++..+ +.+++++++++..++.+
T Consensus 330 ~~~~~-------~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~---g~~gl~~~~~~~~~~a~ 399 (511)
T 3vp6_A 330 KEKGI-------LQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK---GTVGFENQINKCLELAE 399 (511)
T ss_dssp SSTTH-------HHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred eCHHH-------HHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH---hHHHHHHHHHHHHHHHH
Confidence 76542 11110000 00 000 01233334444443 34667889999999999
Q ss_pred HHHHHHHhC-CCeeeC--CCCceEEEEEc-CC-CC---------------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeE
Q 013521 360 IIVDAFQSL-GLKVNG--GKNAPYVWVQF-PG-SS---------------SWDVFAEILEKTHILTIPGSGFGPGGNEHI 419 (441)
Q Consensus 360 ~l~~~L~~~-g~~~~~--~~~~~~~~~~~-~~-~~---------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~i 419 (441)
++.+.|++. |+++.. ++....+++++ +. .+ ..++.++|.++ |+.+.. ..+...+.+++
T Consensus 400 ~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~-~~~~~~~~~~l 477 (511)
T 3vp6_A 400 YLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVG-YQPQGDKANFF 477 (511)
T ss_dssp HHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEE-EEEETTEEEEE
T ss_pred HHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEE-EEEeCCceEEE
Confidence 999999987 888865 34444455554 21 10 12456666666 754433 11222234589
Q ss_pred EEEee---cCHHHHHHHHHHHHhh
Q 013521 420 RVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 420 Rls~~---~~~~~~~~~l~~l~~~ 440 (441)
|+++. .+.++++.+++.|+++
T Consensus 478 Ri~~~~~~~t~~di~~ll~~i~~~ 501 (511)
T 3vp6_A 478 RMVISNPAATQSDIDFLIEEIERL 501 (511)
T ss_dssp EECCCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 99973 2789999999998764
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=198.63 Aligned_cols=268 Identities=15% Similarity=0.132 Sum_probs=177.5
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHH-----hccccccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVI-----VGQAGKFLKE 187 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~-----~g~~~~~~~~ 187 (441)
.+...+|++.+|++. +. ++.++++++++|+.++..++++||+|+++.|+|.+....+.. .|
T Consensus 66 ~p~~~~l~~~la~l~----g~--~~~~~~~sG~~Ai~~~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g-------- 131 (400)
T 3nmy_A 66 NPTRFAYERCVAALE----GG--TRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAG-------- 131 (400)
T ss_dssp CHHHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHC--------
T ss_pred CHHHHHHHHHHHHHh----CC--CCEEEecCHHHHHHHHHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcC--------
Confidence 445677888888875 43 356666666999988777889999999999999976665443 35
Q ss_pred cCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCc
Q 013521 188 TGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS 267 (441)
Q Consensus 188 ~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~ 267 (441)
.+++.++.++.+.+...+ .+++++|++++|+||||.+++ +++|+++|++||+++|+|++|....... +
T Consensus 132 ----~~~~~v~~~d~~~l~~~i--~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~-~-- 199 (400)
T 3nmy_A 132 ----LDFSFVDLTDPAAFKAAI--RADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR-P-- 199 (400)
T ss_dssp ----CEEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC-G--
T ss_pred ----eEEEEECCCCHHHHHHHh--ccCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC-h--
Confidence 478888764211111101 357899999999999999998 8999999999999999999998533221 1
Q ss_pred ccccCCCcceeEEEecCCcccCCccceeEE--EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 268 IYEIPGAREVAIEISSFSKFAGFTGVRLGW--TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 268 ~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
+ .. +.++++.|+||.++.+|.++|. +++.++.+ .+.+...........+++...++...++.
T Consensus 200 ~-~~----g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~-------~~~l~~~~~~~g~~~~~~~a~~~l~~l~~---- 263 (400)
T 3nmy_A 200 L-SL----GADLVVHSATKYLNGHSDMVGGIAVVGDNAEL-------AEQMAFLQNSIGGVQGPFDSFLALRGLKT---- 263 (400)
T ss_dssp G-GG----TCSEEEEETTTTTTCSSSCCCEEEEECSCHHH-------HHHHHHHHHHHCCBCCHHHHHHHHHHHTT----
T ss_pred h-hc----CCcEEEecCccccCCCCCcceeEEEEeCCHHH-------HHHHHHHHHhcCCCCCHHHHHHHHHhHhH----
Confidence 1 11 3458999999999878788765 44444332 45555555554555666666555555542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCe-eeCC----------------CCceEEEEEcCCCChHHHHHHHHH---hcCeE
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSL-GLK-VNGG----------------KNAPYVWVQFPGSSSWDVFAEILE---KTHIL 404 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~ll~---~~gi~ 404 (441)
+..+.++..++.+.+.+.|+++ .+. +..| ..|..+++++++. .+....+++ ..++.
T Consensus 264 -l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~--~~~~~~~~~~l~~~~~~ 340 (400)
T 3nmy_A 264 -LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGG--FDAAKRFCEKTELFTLA 340 (400)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH--HHHHHHHHHHCSSSEEC
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCc--HHHHHHHHHcCCcceEe
Confidence 3555677788888899999876 333 2211 1367899999742 222233333 33445
Q ss_pred EeCCCCcC---------------------CCCCCeEEEEeec
Q 013521 405 TIPGSGFG---------------------PGGNEHIRVSAFG 425 (441)
Q Consensus 405 v~pg~~f~---------------------~~~~~~iRls~~~ 425 (441)
+..|..++ .-.++.+|||++.
T Consensus 341 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl 382 (400)
T 3nmy_A 341 ESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI 382 (400)
T ss_dssp SCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS
T ss_pred cCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc
Confidence 55554432 1135789999864
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=199.82 Aligned_cols=339 Identities=13% Similarity=0.087 Sum_probs=195.6
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC---CCCCCcCcHHHHHHHHHHHhhhCCCCCCc---EEEcCCcHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK---GYGAEQGNMALRTAIADKFYKDMGIEGDE---IFISDGAQSD 147 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~---~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~---I~~t~G~~~a 147 (441)
.+.|-.+++ ++++.+.+++...+.+... .+.. .|+...-..++++...+++.+.+|.+.++ .++++++++|
T Consensus 56 ~i~lias~n--~~~~~V~eA~~~~l~~~y~-~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~A 132 (490)
T 2a7v_A 56 GLELIASEN--FCSRAALEALGSCLNNKYS-EGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA 132 (490)
T ss_dssp SEECCTTCC--CCCHHHHHHHTSGGGTCCC-CC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred CceEECCCC--CCCHHHHHHHHHHHcCCCc-cCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHH
Confidence 467776443 2689999999987754211 1111 12211122356644444444446887753 3455466777
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHh--------HHHHhccccccccccCccceeEEeecCCCCCccCCCCC------C
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYID--------TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------T 212 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~ 212 (441)
+.+ +.++++|||+|++++|.|.++.. .+...|.. .+++.++++++ ....|+++ .
T Consensus 133 n~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~----------~~~~~~~vd~~-~~~iD~d~le~~l~~ 201 (490)
T 2a7v_A 133 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF----------FESMPYKLNPK-TGLIDYNQLALTARL 201 (490)
T ss_dssp HHHHHHHHCCSCEECCC-----------------------------------------CCBCTT-TCSBCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCe----------EEEEecccccc-cCCcCHHHHHHHHhh
Confidence 776 78899999999999999876432 12223310 23445555543 22344332 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCC-CCcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA-AYITDPS-PRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~-~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
.++++|++++|+||+ ..+ +++|.++|++||+++++|++|. .+...+. +.++ +. ..+++.|+||++
T Consensus 202 ~~~klIi~~~s~~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~---~~---aDiv~~S~hK~l-- 268 (490)
T 2a7v_A 202 FRPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KH---ADIVTTTTHKTL-- 268 (490)
T ss_dssp HCCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GT---CSEEEEESSGGG--
T ss_pred cCCcEEEEcCCCCCC--ccc---HHHHHHHHHHcCCEEEEccccccccccCCcCCCCC---CC---CCEEEECCcccC--
Confidence 468998888899986 345 8899999999999999999976 3333332 2222 11 238899999998
Q ss_pred ccceeEEEEeeccccccC-------CchhHHHHHHHHhhhcCC-CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSN-------GYPVIKDFNRIVCTCFNG-ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 362 (441)
.|.|.|++++++++.... ...+.+.+.........+ ++.....+...++........+.+.+++.++++++.
T Consensus 269 ~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~ 348 (490)
T 2a7v_A 269 RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMA 348 (490)
T ss_dssp CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred ccccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 467889999988632000 001134444333222222 232222222323331111234777888999999999
Q ss_pred HHHHhCCCeeeC-CCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcC---CCCCCeEEEEe------ecCHHHH
Q 013521 363 DAFQSLGLKVNG-GKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFG---PGGNEHIRVSA------FGHREYI 430 (441)
Q Consensus 363 ~~L~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~~~iRls~------~~~~~~~ 430 (441)
+.|.+.|+++.. ..+.+++|+++.. .+. +.+..+|++.||.+..+..++ +..+..|||+. ..+++++
T Consensus 349 ~~L~~~G~~v~~~~t~t~lv~vdl~~~g~~~-~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~ 427 (490)
T 2a7v_A 349 DALLERGYSLVSGGTDNHLVLVDLRPKGLDG-ARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDF 427 (490)
T ss_dssp HHHHHTTCEEGGGSCSSSEEEEECTTTTCCH-HHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHH
T ss_pred HHHHHcCcEEecCCCCCeEEEEEeCCCCCCH-HHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHH
Confidence 999999998864 3456789999863 234 445666677899998654333 33467899975 2368999
Q ss_pred HHHHHHHHhh
Q 013521 431 SEACRRLKNF 440 (441)
Q Consensus 431 ~~~l~~l~~~ 440 (441)
+++++.|.++
T Consensus 428 ~~~~~~i~~~ 437 (490)
T 2a7v_A 428 RRVVDFIDEG 437 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888765
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-23 Score=205.91 Aligned_cols=305 Identities=10% Similarity=0.036 Sum_probs=204.2
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCC--CCcEEEcCCcHHHHHH-HHHhc--------CCC-----C-EEEEeCCCch
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISR-LQMLL--------GSN-----V-TVAVQDPSFP 169 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~I~~t~G~~~al~~-l~~l~--------~~g-----d-~Vlv~~p~y~ 169 (441)
...|....+..++.+++.+|+.+.++.+ ++++++|+|+++++.+ +..+. ++| + .|+++.++|+
T Consensus 121 ~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~ 200 (504)
T 2okj_A 121 MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY 200 (504)
T ss_dssp SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred CCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchH
Confidence 3456666677788888888887766776 7899999999999886 44432 256 6 7899999999
Q ss_pred hhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----------CCCccEEEEcCCCCccccCCCHHHHHH
Q 013521 170 AYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----------TSRTDIIFFCSPNNPTGHAATWQQLKK 238 (441)
Q Consensus 170 ~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----------~~~~~~v~i~~p~NPtG~~~~~~~~~~ 238 (441)
++...+..+|. |. .+++.+|.+.++ ..+++. ..++++|++++|+||||.+.+ +++
T Consensus 201 s~~~~~~~~g~-g~--------~~v~~v~~~~~~--~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~ 266 (504)
T 2okj_A 201 SIKKAGAALGF-GT--------DNVILIKCNERG--KIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQE 266 (504)
T ss_dssp HHHHHHHHTTS-CG--------GGEEEECBCTTS--CBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHH
T ss_pred HHHHHHHHcCC-Cc--------ccEEEEecCCCC--CCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHH
Confidence 99999988873 11 168888886433 333221 115889999999999999988 889
Q ss_pred HHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc-ccccCCchhHHHHH
Q 013521 239 LVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE-LRYSNGYPVIKDFN 317 (441)
Q Consensus 239 i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~-~~~~~~~~~~~~~~ 317 (441)
|+++|++||+++++|++|+.+....... -..+++.....+++.|++|+++.| .++|+++++++ ++ ....
T Consensus 267 I~~la~~~g~~lhvD~a~~~~~~~~~~~-~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~--------~~~~ 336 (504)
T 2okj_A 267 IADICEKYNLWLHVDAAWGGGLLMSRKH-RHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGIL--------QGCN 336 (504)
T ss_dssp HHHHHHHHTCEEEEEETTGGGGGGCTTT-GGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHH--------HHHH
T ss_pred HHHHHHHcCCEEEEehhhhhHHHhCHhh-HhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHH--------HHHh
Confidence 9999999999999999999766432110 011222222347788999999844 79999999874 42 1110
Q ss_pred -HHHhhh--------------------cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC-
Q 013521 318 -RIVCTC--------------------FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNG- 374 (441)
Q Consensus 318 -~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~- 374 (441)
...... ......+.+.++.+.+. .+.++++.++..++++++.+.|++. ++++..
T Consensus 337 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 413 (504)
T 2okj_A 337 QMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG---TVGFENQINKCLELAEYLYAKIKNREEFEMVFN 413 (504)
T ss_dssp CCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSS
T ss_pred cCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 000000 00012455555555553 3456788888999999999999987 888764
Q ss_pred --CCCceEEEEEcCCC----------------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee---cCHHHHHHH
Q 013521 375 --GKNAPYVWVQFPGS----------------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF---GHREYISEA 433 (441)
Q Consensus 375 --~~~~~~~~~~~~~~----------------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~---~~~~~~~~~ 433 (441)
+..+++.+...+.. ...++.+.+.++ |+.+..+..+. ...+++|+++. +++++++++
T Consensus 414 ~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~-~~~~~lRis~~~~~~t~edi~~~ 491 (504)
T 2okj_A 414 GEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQG-DKANFFRMVISNPAATQSDIDFL 491 (504)
T ss_dssp SCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEET-TEEEEEEECCCCTTCCHHHHHHH
T ss_pred CCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEEC-CceEEEEEEeCCCCCCHHHHHHH
Confidence 44455544433421 023566666665 75433322232 12368999985 489999999
Q ss_pred HHHHHhh
Q 013521 434 CRRLKNF 440 (441)
Q Consensus 434 l~~l~~~ 440 (441)
+++|+++
T Consensus 492 ~~~l~~~ 498 (504)
T 2okj_A 492 IEEIERL 498 (504)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-25 Score=219.56 Aligned_cols=329 Identities=12% Similarity=0.059 Sum_probs=208.9
Q ss_pred cCCCCCeEEeCCCCCC--C-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCc
Q 013521 68 KHPDARLIRLGIGDTT--Q-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGA 144 (441)
Q Consensus 68 ~~~~~~~i~l~~g~~~--~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~ 144 (441)
+..++++|||..|... + ..+|.+.+++.+.+.+. ....| +.....+|.+.|++++ + ..+.+++++++
T Consensus 96 D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~----~~~~~-~~~~~~~Lae~L~~~~----p-~~~~v~~~nSG 165 (465)
T 2yky_A 96 DVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVG----LNLST-QTENEALFAEAVCDRF----P-SIDLVRFTNSG 165 (465)
Confidence 3346789999888753 2 25788999999987651 12234 4445667777777764 3 46889999999
Q ss_pred HHHHHHHHHh---cCCCCEEEEeCCCchhhHhHHHHhc--cccccccccCccceeEEeecCCCCCccCCCCC-CCCccEE
Q 013521 145 QSDISRLQML---LGSNVTVAVQDPSFPAYIDTSVIVG--QAGKFLKETGKYRNIVYMNCRPENNFFPDLST-TSRTDII 218 (441)
Q Consensus 145 ~~al~~l~~l---~~~gd~Vlv~~p~y~~~~~~~~~~g--~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~~~~~~v 218 (441)
++|+.....+ ...++.|++.+++|++...... .| ..|. . ..+..++.++-+.+...+.+ .+++++|
T Consensus 166 seA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~-sg~~~~g~-~------~~~~~~~~~d~~~l~~~l~~~~~~~aav 237 (465)
T 2yky_A 166 TEANLMALATATAITGRKTVLAFDGGYHGGLLNFA-SGHAPTNA-P------YHVVLGVYNDVEGTADLLKRHGHDCAAI 237 (465)
Confidence 9999874333 2456899999999988654433 22 0010 0 02223332211111111111 1467776
Q ss_pred EEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
++...+|+||.+. +++.+++|.++|++||+++|+||+|. +... ........ +...-+.||||.+| .|+|+||
T Consensus 238 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g-~~~a~~~~----gv~pDi~t~sK~lg-~G~piG~ 310 (465)
T 2yky_A 238 LVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLS-GGGAQEML----GISADLTTLGKYIG-GGMSFGA 310 (465)
Confidence 6543366799655 68899999999999999999999999 6322 11111111 12233568999999 6999999
Q ss_pred EEeeccccccCCchhHHHHHH-----HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC----
Q 013521 298 TVVPEELRYSNGYPVIKDFNR-----IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL---- 368 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 368 (441)
++++++++ +.+.. .......+.+++++.++.+.|+.... +.+.++++++.+++.+.|++.
T Consensus 311 v~~~~~i~--------~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~---~~~~~~~~~~~~~l~~~L~~~~~~~ 379 (465)
T 2yky_A 311 FGGRRDLM--------ERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT---RQAASDLSASGDRFRANLNRIAVEN 379 (465)
Confidence 99999884 33332 12223445788899888888863211 334566666666666666554
Q ss_pred CCeeeCCCCceEEEEEcCC-C-------------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHH
Q 013521 369 GLKVNGGKNAPYVWVQFPG-S-------------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEAC 434 (441)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l 434 (441)
++....+..|.++|+.++. . ....++..+++ +||.+.|+. |.. +++..+++++++++
T Consensus 380 ~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~-~~~-------~s~~~t~edid~~l 450 (465)
T 2yky_A 380 QAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRG-MYA-------LSLEIADAGRDAFA 450 (465)
Confidence 3322233468888888753 1 12356677775 599999975 321 67777899999999
Q ss_pred HHHHhhC
Q 013521 435 RRLKNFL 441 (441)
Q Consensus 435 ~~l~~~l 441 (441)
++|.+++
T Consensus 451 ~~l~~~l 457 (465)
T 2yky_A 451 EALADFI 457 (465)
Confidence 9998764
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-22 Score=193.73 Aligned_cols=286 Identities=14% Similarity=0.114 Sum_probs=181.1
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccccccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLKET 188 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~ 188 (441)
....++++++|+++ +.+ +.|++++| ++++.+ +..++++||+|+++.++|++....+ ...|
T Consensus 58 ~~~~~l~~~la~~~----g~~-~~v~~~sG-t~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g--------- 122 (421)
T 2ctz_A 58 PTVDVLEKRLAALE----GGK-AALATASG-HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG--------- 122 (421)
T ss_dssp HHHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTT---------
T ss_pred hHHHHHHHHHHHHh----CCC-ceEEecCH-HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC---------
Confidence 34588999999987 443 45666665 888887 6667899999999999999987765 4556
Q ss_pred CccceeEEe-ecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccc-cccccCCC
Q 013521 189 GKYRNIVYM-NCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAY-AAYITDPS 264 (441)
Q Consensus 189 ~~~~~v~~v-~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~-~~~~~~~~ 264 (441)
.+++.+ +.++. .++++ .+++++|++++|+||||.+++ +++|+++|++||+++|+|++| +. .+...
T Consensus 123 ---~~~~~~~~~~d~----~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~-g~~~~ 191 (421)
T 2ctz_A 123 ---IEVRFTSREERP----EEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMG-GYLLR 191 (421)
T ss_dssp ---CEEEECCTTCCH----HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGG-GTSCC
T ss_pred ---CEEEEECCCCCH----HHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccc-cccCC
Confidence 477777 65311 11111 358899999999999999999 889999999999999999999 53 22221
Q ss_pred CCcccccCCCcceeEEEecCCcccCCccceeEEEEeec-c--c-------cccC-----Cchh---------HHHHHH-H
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE-E--L-------RYSN-----GYPV---------IKDFNR-I 319 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~-~--~-------~~~~-----~~~~---------~~~~~~-~ 319 (441)
+ + .. +.++++.|+||.++.+|.|+|++++.+ + + +... .... ....+. .
T Consensus 192 ~--~-~~----~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~ 264 (421)
T 2ctz_A 192 P--L-AW----GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDG 264 (421)
T ss_dssp G--G-GG----TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTH
T ss_pred c--c-cc----CCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHH
Confidence 2 2 12 234899999999998899999998862 1 1 1000 0000 000000 0
Q ss_pred HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee--C----------------CCCceE
Q 013521 320 VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVN--G----------------GKNAPY 380 (441)
Q Consensus 320 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~----------------~~~~~~ 380 (441)
........+++...++...++ .+..+.++..++.+.+.+.|+++ ++... + ...|..
T Consensus 265 ~~~~g~~~~~~~a~~~~~~l~-----~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~i 339 (421)
T 2ctz_A 265 LRDQGQALGPFEAWVVLLGME-----TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAV 339 (421)
T ss_dssp HHHHCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSE
T ss_pred HHhcCCCCCHHHHHHHHcCcc-----hHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceE
Confidence 011112334444333333333 23445566668889999999887 66543 1 123567
Q ss_pred EEEEcCCCChHHHHHHHHHh---cCeEEeCCCCcC---------------------CCCCCeEEEEeecCHHHHHHHHHH
Q 013521 381 VWVQFPGSSSWDVFAEILEK---THILTIPGSGFG---------------------PGGNEHIRVSAFGHREYISEACRR 436 (441)
Q Consensus 381 ~~~~~~~~~~~~~~~~ll~~---~gi~v~pg~~f~---------------------~~~~~~iRls~~~~~~~~~~~l~~ 436 (441)
+.+.+++. .+....++++ .++.++.|.... ...++.||+|++ .++++++++.
T Consensus 340 vsf~l~~~--~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g--~e~~~~li~~ 415 (421)
T 2ctz_A 340 LTFGLKGG--YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG--LEHVEDLKAE 415 (421)
T ss_dssp EEEEETTH--HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECC--SSCHHHHHHH
T ss_pred EEEEeCCC--HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeC--CCCHHHHHHH
Confidence 88888642 2333444444 344555553221 012589999985 3577777777
Q ss_pred HHhhC
Q 013521 437 LKNFL 441 (441)
Q Consensus 437 l~~~l 441 (441)
|.++|
T Consensus 416 l~~al 420 (421)
T 2ctz_A 416 LKEAL 420 (421)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77764
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=200.65 Aligned_cols=339 Identities=9% Similarity=0.018 Sum_probs=209.1
Q ss_pred CCCCeEEeCCCCCC--C-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDTT--Q-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~~--~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.+||+..|... + ..++.+.+++.+.+........ ..|+. ....++++++++.+.+..+...++|++++|+++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~-~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGse 138 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINR-PALGI-LPPENFVEKLRESLLSVAPKGMSQLITMACGSC 138 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCC-CCTTT-SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHH
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccc-ccccc-ccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchh
Confidence 35679999877542 2 3589999999987643210011 23432 345789999999776644556789999999999
Q ss_pred HHHH-HHHhc--------C-----------------CC---CEEEEeCCCchhhHhHHHHh-ccccccccccCccceeEE
Q 013521 147 DISR-LQMLL--------G-----------------SN---VTVAVQDPSFPAYIDTSVIV-GQAGKFLKETGKYRNIVY 196 (441)
Q Consensus 147 al~~-l~~l~--------~-----------------~g---d~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~v~~ 196 (441)
|+.. +..+. . || +.|++.+++|++....+..+ |.... .........+..
T Consensus 139 A~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~-~~~~~~~~~~~~ 217 (472)
T 1ohv_A 139 SNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI-HKIDIPSFDWPI 217 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHH-HHTTSCCCCCCE
T ss_pred HHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccc-cccCCCCCCCcc
Confidence 9987 43331 1 45 89999999999976555333 32100 000000001111
Q ss_pred eecCCC-CC------c--------cCCCCC--CC------CccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCcEEEE
Q 013521 197 MNCRPE-NN------F--------FPDLST--TS------RTDIIFFCSPNNPTGH-AATWQQLKKLVEFAKANGSIIVY 252 (441)
Q Consensus 197 v~~~~~-~~------~--------~~~~~~--~~------~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~ 252 (441)
++.... .. + ..++++ .. ++++|++...+|+||. ..+++.+++|.++|++||+++|+
T Consensus 218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 297 (472)
T 1ohv_A 218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV 297 (472)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 121100 00 0 011111 12 6777776555888996 56899999999999999999999
Q ss_pred cccccccccCCCCCcccccCCC--cceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHH
Q 013521 253 DSAYAAYITDPSPRSIYEIPGA--REVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNI 330 (441)
Q Consensus 253 De~~~~~~~~~~~~~~~~~~~~--~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (441)
||+|..|...+.......+.-. +| +.||||.+ ++| ||++ ++++. . +.........+.+++
T Consensus 298 DEv~~g~g~~g~~~~~~~~gv~~~~D----i~t~sK~~-l~G---G~~~-~~~~~-~--------~~~~~~~~T~~~~~~ 359 (472)
T 1ohv_A 298 DEVQTGGGSTGKFWAHEHWGLDDPAD----VMTFSKKM-MTG---GFFH-KEEFR-P--------NAPYRIFNTWLGDPS 359 (472)
T ss_dssp ECTTTTTTTTSSSSGGGGGCCSSCCS----EEEECGGG-SSE---EEEE-CGGGS-C--------SSSSSSCCSSSSCHH
T ss_pred eCcccCCCCCCCchhccccCCCCCCC----EEEEcccc-ccC---CccC-chhhc-c--------cccccccCccCccHH
Confidence 9999876554432233222111 22 45899995 345 7776 55442 0 111122233456888
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--C----CeeeCCCCceEEEEEcCCC-ChHHHHHHHHHhcCe
Q 013521 331 VQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--G----LKVNGGKNAPYVWVQFPGS-SSWDVFAEILEKTHI 403 (441)
Q Consensus 331 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g----~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi 403 (441)
++.++.++++... + +.+.++++++++++.+.|+++ + +....+ .|.+++++++.. ...+++..+++ +||
T Consensus 360 ~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~-~Gv 434 (472)
T 1ohv_A 360 KNLLLAEVINIIK-R--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG-RGTFCSFDTPDESIRNKLISIARN-KGV 434 (472)
T ss_dssp HHHHHHHHHHHHH-H--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE-ETTEEEEECSSHHHHHHHHHHHHH-TTE
T ss_pred HHHHHHHHHHHHH-h--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC-CceEEEEEeCChhHHHHHHHHHHH-CCe
Confidence 8888888775211 1 335677777777777777654 1 322333 477888888631 24567777776 599
Q ss_pred EEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 404 LTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 404 ~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+.|+ +.++||+++ ..+++++++++++|+++
T Consensus 435 ~~~~~------g~~~iRi~~~~~~t~e~i~~~~~~l~~~ 467 (472)
T 1ohv_A 435 MLGGC------GDKSIRFRPTLVFRDHHAHLFLNIFSDI 467 (472)
T ss_dssp ECEEE------TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99885 256899965 56899999999999875
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=196.88 Aligned_cols=315 Identities=11% Similarity=0.062 Sum_probs=199.4
Q ss_pred CCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhc-------C-CCC------EEEEeCCCchh
Q 013521 106 GYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLL-------G-SNV------TVAVQDPSFPA 170 (441)
Q Consensus 106 ~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~-------~-~gd------~Vlv~~p~y~~ 170 (441)
....|...++..++.+++.+++.+.+|.+++++++|+|+++++.+ +..+. + +|| .|++..++|++
T Consensus 136 ~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s 215 (515)
T 2jis_A 136 SQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYS 215 (515)
T ss_dssp CTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred CCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHH
Confidence 334566666777777877777777667778899999999999776 43331 2 575 89999999999
Q ss_pred hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--------CCCccEEEEcCCCCccccCCCHHHHHHHHH
Q 013521 171 YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--------TSRTDIIFFCSPNNPTGHAATWQQLKKLVE 241 (441)
Q Consensus 171 ~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~ 241 (441)
+...+..+|. |. .+++.+|.+.++.++++ +++ ..++++|++++|+||||.+.+ +++|++
T Consensus 216 ~~~~~~~~g~-g~--------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~ 283 (515)
T 2jis_A 216 IQKGAAFLGL-GT--------DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIAD 283 (515)
T ss_dssp HHHHHHHTTS-CG--------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHH
T ss_pred HHHHHHHcCC-CC--------CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHH
Confidence 9999888873 11 17888888653322221 111 124889999999999999988 889999
Q ss_pred HHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc--ccccCCchhHHHHHH
Q 013521 242 FAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE--LRYSNGYPVIKDFNR 318 (441)
Q Consensus 242 ~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~--~~~~~~~~~~~~~~~ 318 (441)
+|++||+++++|++|+.+..... ... .+.+..+..+++.|++|+++ .+.++|+++++++ ++..........+..
T Consensus 284 la~~~g~~l~vD~a~~~~~~~~~~~~~--~~~g~~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~ 360 (515)
T 2jis_A 284 VCQRHGLWLHVDAAWGGSVLLSQTHRH--LLDGIQRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKRCHGSQASYLFQ 360 (515)
T ss_dssp HHHHHTCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHHHHCC-------
T ss_pred HHHHcCCeEEEehhhhhHHHhChhhHh--hcCCCccCCEEEECcccccC-CCCCeeEEEEeChHHHHHHHhcCCchhccC
Confidence 99999999999999997665321 111 12222233588999999997 4568999999877 421000000000000
Q ss_pred HHh-------hh-c--C---CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEE
Q 013521 319 IVC-------TC-F--N---GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQ 384 (441)
Q Consensus 319 ~~~-------~~-~--~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 384 (441)
... .. + . ....+.+.++.+.+. ...++++.++..++++++.+.|++. |+++..++....+.+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg---~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~ 437 (515)
T 2jis_A 361 QDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG---DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFW 437 (515)
T ss_dssp --CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEE
T ss_pred CcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEE
Confidence 000 00 0 0 011333434444442 3456788888999999999999987 8888654433334443
Q ss_pred c-CC---C--ChH-----------HHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee---cCHHHHHHHHHHHHhh
Q 013521 385 F-PG---S--SSW-----------DVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 385 ~-~~---~--~~~-----------~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~---~~~~~~~~~l~~l~~~ 440 (441)
. +. . +.. .+...+.++ |+.+...... ....+++|+++. .+++++++++++|+++
T Consensus 438 ~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~-~~~~~~lRis~~~~~~t~edid~~~~~l~~~ 511 (515)
T 2jis_A 438 FVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPH-GTRGNFFRVVVANSALTCADMDFLLNELERL 511 (515)
T ss_dssp ECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEE-TTEEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEE-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3 31 0 111 134445544 7544221100 112468999984 5899999999999875
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=194.38 Aligned_cols=258 Identities=14% Similarity=0.099 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHh--hccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEE--cCCcHHHHHH-HHHhcCCCCEEE
Q 013521 88 DIITSAMAEHAF--ALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFI--SDGAQSDISR-LQMLLGSNVTVA 162 (441)
Q Consensus 88 ~~~~~al~~~~~--~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~--t~G~~~al~~-l~~l~~~gd~Vl 162 (441)
+.+++++.++.. ........+.| +..|..+|++.+|+++ +.+.. ++. ++|+++++.+ +..+++|||+|+
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y-~~~~~~~Le~~lA~l~----g~e~a-lv~p~~~sGt~Ai~~al~all~pGD~Vl 119 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGY-GDIGRDSLDAVYARVF----NTESA-LVRPHFVNGTHALGAALFGNLRPGNTML 119 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHH----TCSEE-EEETTCCSHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCC-CHHHHHHHHHHHHHHh----CCcce-EEeCCCccHHHHHHHHHHHHhCCCCEEE
Confidence 456677766431 11111223345 3457888999999986 55433 442 6777888887 688899999999
Q ss_pred EeC-CCchhhHhHH-----------HHhccccccccccCccceeEEeecCCCCCccCC-CCC--C--CCccEEEEcC---
Q 013521 163 VQD-PSFPAYIDTS-----------VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T--SRTDIIFFCS--- 222 (441)
Q Consensus 163 v~~-p~y~~~~~~~-----------~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~--~~~~~v~i~~--- 222 (441)
+++ |.|+++...+ ...| .+++.++.++++.++++ +++ . +++++|++++
T Consensus 120 ~~~~~~y~~~~~~~g~~~~~~~~~l~~~G------------~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~ 187 (427)
T 3i16_A 120 SVCGEPYDTLHDVIGITENSNMGSLKEFG------------INYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTG 187 (427)
T ss_dssp ESSSSCCGGGHHHHTCSCCCSSCCTGGGT------------CEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCC
T ss_pred EeCCCccHHHHHHHhccccchHHHHHHcC------------CEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCC
Confidence 999 9999887444 3334 48888888654333222 111 2 6899999998
Q ss_pred -CCCccccCCCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc-ceeEEE
Q 013521 223 -PNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG-VRLGWT 298 (441)
Q Consensus 223 -p~NPtG~~~~~~~~~~i~~~a~~--~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l 298 (441)
|+||||.+ .++++|+++|++ +|+++|+|++|..+.+...|. .. +.+++++|+||.+|.+| .+.||+
T Consensus 188 ~p~nptg~i---~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~----gaDiv~~S~sK~lgg~g~~~gG~i 257 (427)
T 3i16_A 188 YGWRRALLI---EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DV----GADLIAGSLIKNIGGGIAPTGGYL 257 (427)
T ss_dssp SSSSCCCCH---HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GG----TCSEEEEETTSGGGTTTCCSCEEE
T ss_pred CCCCCcccH---HHHHHHHHHHHHhCCCCEEEEECCCccccccCCcc---cc----CCeEEEecCcccCCCCCCceEEEE
Confidence 88998765 569999999999 999999999999766432222 11 23499999999998544 667999
Q ss_pred EeeccccccCCchhHHHHHHHHhhhcCC--CcH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013521 299 VVPEELRYSNGYPVIKDFNRIVCTCFNG--ASN-IVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG 375 (441)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 375 (441)
++++++ ++.+.........+ .++ +. ++..++ .+...+..+.++..+++..+.+.|+++|+++++.
T Consensus 258 ~~~~~l--------i~~l~~~~~~~~~g~~~~~~~~--~a~~~l--~gl~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~ 325 (427)
T 3i16_A 258 AGTKDC--------IEKTSYRLTVPGIGGECGSTFG--VVRSMY--QGLFLAPHISMEALKGAILCSRIMELAGFEVMPK 325 (427)
T ss_dssp EECHHH--------HHHHHHHHSCTTTGGGCCCCTT--CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEESC
T ss_pred EECHHH--------HHHHHHhcccCccCccCCccHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecCC
Confidence 999887 35554432211111 111 11 011122 2234456778889999999999999999888653
Q ss_pred CCce-----EEEEEcC
Q 013521 376 KNAP-----YVWVQFP 386 (441)
Q Consensus 376 ~~~~-----~~~~~~~ 386 (441)
.+. .+.+.+.
T Consensus 326 -~~~~~~~~i~~i~l~ 340 (427)
T 3i16_A 326 -YDEKRSDIIQSIKFN 340 (427)
T ss_dssp -TTSCCSSSCEEEECS
T ss_pred -CCCCCccEEEEEEEC
Confidence 333 6777775
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-20 Score=179.50 Aligned_cols=312 Identities=15% Similarity=0.094 Sum_probs=199.6
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQ 152 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~ 152 (441)
++++..+.+ ..++.+.+++.+.+... .|.+..+..++++++|+++ +.+ ++++++++++++.+ +.
T Consensus 3 ~~~~~~~~~--~~~~~~~~a~~~~~~~~-------~~~~~~~~~~l~~~la~~~----~~~--~~i~~~sGt~a~~~al~ 67 (390)
T 3b8x_A 3 MINYPLASS--TWDDLEYKAIQSVLDSK-------MFTMGEYVKQYETQFAKTF----GSK--YAVMVSSGSTANLLMIA 67 (390)
T ss_dssp --CBCSCCC--CCCHHHHHHHHHHHHHT-------CCSSCHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHH
T ss_pred ceeccCCCC--CCCHHHHHHHHHHHHcC-------CCCCChHHHHHHHHHHHHH----CCC--cEEEECCHHHHHHHHHH
Confidence 344444433 35788889999888641 3556778999999999997 543 55666666678887 66
Q ss_pred Hh-------cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEE
Q 013521 153 ML-------LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFF 220 (441)
Q Consensus 153 ~l-------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i 220 (441)
.+ +++||+|+++.|+|+++...+...| .+++.++++++ .+..|++. .+++++|++
T Consensus 68 ~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~ 134 (390)
T 3b8x_A 68 ALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYG------------LRVKFVDIDIN-TLNIDIESLKEAVTDSTKAILT 134 (390)
T ss_dssp HTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTT------------CEEEEECBCTT-TCSBCHHHHHHHCCTTEEEEEE
T ss_pred HHHhhhhcCCCCcCEEEECCCCcHHHHHHHHHcC------------CEEEEEecCcc-ccCcCHHHHHHHhCcCCeEEEE
Confidence 66 7899999999999999999988888 58899998764 23333221 357899998
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
+| ++|...+ +++|.++|++||+++|+|++|+...... . ..+....+...+....+|.++ +| +.|++++
T Consensus 135 ~~---~~g~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~-~---~~~g~~~~~~~~s~~~~k~~~-~g-~gG~~~~ 202 (390)
T 3b8x_A 135 VN---LLGNPNN---FDEINKIIGGRDIILLEDNCESMGATFN-N---KCAGTFGLMGTFSSFYSNHIA-TM-EGGCIVT 202 (390)
T ss_dssp EC---GGGCCCC---HHHHHHHHTTSCCEEEEECTTCTTCEET-T---EETTSSSSEEEEECCTTSSSC-SS-SCEEEEE
T ss_pred EC---CccChhh---HHHHHHHHHHcCCEEEEECcCcccCEEC-C---cccccccceEEEEccCCCCCc-cC-CceEEEe
Confidence 74 4555555 8899999999999999999998432211 1 111111121111112356654 34 3499998
Q ss_pred eccccccCCchhHHHHHHHHhhh------------------------------c-CCCcHHHHHHHHHhcCCCcHHHHHH
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTC------------------------------F-NGASNIVQAGGLACLSPDGFQALRT 349 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------~-~~~~~~~~~a~~~~l~~~~~~~~~~ 349 (441)
+++.+ .+.+....... + ..++.+...++.+.+ +++++
T Consensus 203 ~~~~l-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-----~~l~~ 270 (390)
T 3b8x_A 203 DDEEI-------YHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-----KKLPR 270 (390)
T ss_dssp SCHHH-------HHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-----HHHHH
T ss_pred CCHHH-------HHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH-----HHHHH
Confidence 86432 23333222111 0 013444444443333 45677
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCeeeCCC--Cce-EEEEEcC---CCChHHHHHHHHHhcCeEEeC---CCCcCC-C----
Q 013521 350 VIDYYKENAKIIVDAFQSL-GLKVNGGK--NAP-YVWVQFP---GSSSWDVFAEILEKTHILTIP---GSGFGP-G---- 414 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~--~~~-~~~~~~~---~~~~~~~~~~ll~~~gi~v~p---g~~f~~-~---- 414 (441)
..++.+++++++.+.|+++ ++++..+. .++ .+++.++ +.+..++.+.|. ++||.+++ |..+.. .
T Consensus 271 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~ 349 (390)
T 3b8x_A 271 FISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLN-SAGIECRPIVTGNFLKNTDVLKY 349 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHH-HTTBCCBCSTTSSGGGCHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHH-HCCCCeeeecCCchhhcchhhhc
Confidence 8888889999999999887 77765432 222 3566666 335566666665 46999987 332111 0
Q ss_pred ------C---------CCeEEEEee--cCHHHHHHHHHHHH
Q 013521 415 ------G---------NEHIRVSAF--GHREYISEACRRLK 438 (441)
Q Consensus 415 ------~---------~~~iRls~~--~~~~~~~~~l~~l~ 438 (441)
. .+.|||++. .++++++.+++.|+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 390 (390)
T 3b8x_A 350 FDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 390 (390)
T ss_dssp CEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHTC
T ss_pred CCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhhC
Confidence 0 136999974 48999999998763
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-21 Score=189.96 Aligned_cols=324 Identities=12% Similarity=0.010 Sum_probs=214.6
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC---------cEEEcCCcHHHHHH-HHHhc-
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD---------EIFISDGAQSDISR-LQMLL- 155 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~---------~I~~t~G~~~al~~-l~~l~- 155 (441)
+..+.+.+...+. .....|...++..++++++++|+.+.+|.+.+ ..++|+|++++..+ +....
T Consensus 87 ~~~~~~~l~~~~n-----~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~ 161 (475)
T 3k40_A 87 PAIVADMLSGAIA-----CIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKA 161 (475)
T ss_dssp HHHHHHHHHHHHC-----CCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-----ccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHH
Confidence 3444555555553 34446777789999999999999887776643 68899999888654 43321
Q ss_pred ------------------CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC-----
Q 013521 156 ------------------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST----- 211 (441)
Q Consensus 156 ------------------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~----- 211 (441)
.+++.|+++.++|.++...+...| .+++.+|++.++ ++++ +++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g------------~~~~~v~~d~~~-~d~~~L~~~i~~~ 228 (475)
T 3k40_A 162 KKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGG------------VKLRSVQSENHR-MRGAALEKAIEQD 228 (475)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHT------------CEEEEECCBTTB-CCHHHHHHHHHHH
T ss_pred HHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcC------------CceEEEECCCCC-cCHHHHHHHHHHH
Confidence 135689999999999999999888 589999997643 3322 211
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCCCcceeEEEecCCcc
Q 013521 212 ---TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKF 287 (441)
Q Consensus 212 ---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~ 287 (441)
...+.+|+++.++|+||.+-+ +++|+++|++||+++++|++|+...... ..... +.+......+..|++|+
T Consensus 229 ~~~~~~~~~v~~~~~~t~~G~~~~---l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~--~~gi~~~Ds~~~~~hK~ 303 (475)
T 3k40_A 229 VAEGLIPFYAVVTLGTTNSCAFDY---LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHL--MKGIESADSFNFNPHKW 303 (475)
T ss_dssp HHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHH
T ss_pred HHCCCccEEEEEEecCCCCcCcCC---HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHH--hcCcccCCEEEECchhc
Confidence 012667788899999999977 8899999999999999999998643321 11111 11212234778899999
Q ss_pred cCCccceeEEEEeeccccccCCchhHHHHHHH---------HhhhcCC---CcHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013521 288 AGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI---------VCTCFNG---ASNIVQAGGLACLSPDGFQALRTVIDYYK 355 (441)
Q Consensus 288 ~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 355 (441)
++ ....+|++++.+.....+.......+... ....... ...+.+.+++..+ +.+.+++++++..
T Consensus 304 l~-~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~---g~~g~~~~~~~~~ 379 (475)
T 3k40_A 304 ML-VNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLY---GVENLQAHIRRHC 379 (475)
T ss_dssp SS-CCSSCEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cC-CCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence 87 55678988887654311000000000000 0000000 1123344444444 3355688889999
Q ss_pred HHHHHHHHHHHhC-CCeeeCCCCceEEEEEcCCC--ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee---cCHHH
Q 013521 356 ENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGS--SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF---GHREY 429 (441)
Q Consensus 356 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~---~~~~~ 429 (441)
++++++.+.|++. |+++..++..+.+++++++. ...++.+++.++.++.+.|+..+ +..++|+++. .++++
T Consensus 380 ~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~---g~~~lR~~~~~~~tt~~d 456 (475)
T 3k40_A 380 NFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIK---DVYFLRMAICSRFTQSED 456 (475)
T ss_dssp HHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEET---TEEEEEEECCCTTCCHHH
T ss_pred HHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEEC---CEEEEEEEeCCCCCCHHH
Confidence 9999999999998 89987766777888888642 24567777777744455554332 3578999974 37899
Q ss_pred HHHHHHHHHhh
Q 013521 430 ISEACRRLKNF 440 (441)
Q Consensus 430 ~~~~l~~l~~~ 440 (441)
+++++++|+++
T Consensus 457 i~~~~~~i~~~ 467 (475)
T 3k40_A 457 MEYSWKEVSAA 467 (475)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-22 Score=192.40 Aligned_cols=255 Identities=16% Similarity=0.158 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHh---hccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEE---cCCcHHHHHH-HHHhcCCCCE
Q 013521 88 DIITSAMAEHAF---ALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFI---SDGAQSDISR-LQMLLGSNVT 160 (441)
Q Consensus 88 ~~~~~al~~~~~---~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~---t~G~~~al~~-l~~l~~~gd~ 160 (441)
..+++++.+... .+.. ...+.|+ ..+..+|++.+|+++ +.+ ..++ ++|+++++.+ +..+++|||+
T Consensus 32 ~~vl~a~~~~~~~~~~~~~-~~~~~y~-~~~~~~Le~~lA~l~----g~e--~alv~p~~~sGt~Ai~~al~all~~GD~ 103 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHP-STGYGYD-DEGRDTLERVYATVF----KTE--AALVRPQIISGTHAISTVLFGILRPDDE 103 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCC-CCTTCTT-CHHHHHHHHHHHHHH----TCS--EEEEETTSCSHHHHHHHHHHHHCCTTCE
T ss_pred HHHHHHHHHhhhhhhccCC-CcCCCCC-hhHHHHHHHHHHHHh----CCC--cEEEECCCccHHHHHHHHHHHhcCCCCE
Confidence 456677777532 1111 3334564 457888999999986 543 3444 7888889887 7788999999
Q ss_pred EEEeC-CCchhhHhHH----------HHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcC----
Q 013521 161 VAVQD-PSFPAYIDTS----------VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCS---- 222 (441)
Q Consensus 161 Vlv~~-p~y~~~~~~~----------~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~---- 222 (441)
|++++ |.|.++...+ +..| .+++.++.++++..+++ +++ .+++++|++++
T Consensus 104 Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G------------~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~ 171 (409)
T 3jzl_A 104 LLYITGQPYDTLEEIVGIRKQGQGSLKDFH------------IGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGY 171 (409)
T ss_dssp EEECSSSCCTTHHHHHTSSSSSSSCTGGGT------------CEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTT
T ss_pred EEEeCCCCcHhHHHHHhcccchhhHHHHcC------------CEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCC
Confidence 99998 9999887544 3334 47888888654323221 111 36899999998
Q ss_pred CCCccccCCCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc-ceeEEEE
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG-VRLGWTV 299 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~--~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~ 299 (441)
|+||||.+. ++++|+++|++ ||+++|+|++|+.+.+...+.. . +.+++++|+||.+|.+| .+.||++
T Consensus 172 p~nptg~v~---~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~---~----g~Div~~S~sK~lgg~~~~~GG~v~ 241 (409)
T 3jzl_A 172 ADRPSFTIE---KIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPE---V----GADIIAGSLIKNPGGGLAKTGGYIA 241 (409)
T ss_dssp SSSCCCCHH---HHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGG---G----TCSEEEEETTSGGGTTTCSSCEEEE
T ss_pred CCCCcCccc---cHHHHHHHHHhhCCCCEEEEeCCcccccccCCccc---c----CCeEEEECccccCCccCCceEEEEE
Confidence 999998764 59999999999 9999999999997664322321 1 23499999999998444 3469999
Q ss_pred eeccccccCCchhHHHHHHHHhhh----cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTC----FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG 375 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 375 (441)
+++++ ++.+....... ..+.....+.++.. +...+..++++..++++++.+.|+++|+++.+.
T Consensus 242 ~~~~l--------i~~l~~~~~~~~~g~~~g~~~~~~~~~l~-----gl~~~~~r~~~~~~~a~~la~~L~~~g~~v~p~ 308 (409)
T 3jzl_A 242 GKEAL--------VDLCGYRLTTPGIGREAGASLYSLLEMYQ-----GFFLAPHVTAQAIKGARFTAAMLAEFGVEADPV 308 (409)
T ss_dssp ECHHH--------HHHHHHHHSCTTTGGGCCCCTTCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEESC
T ss_pred eCHHH--------HHHHHHHhccccccccccccHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 99877 35554432211 11111111222222 233446677888899999999999999888543
Q ss_pred CCce-----EEEEEcC
Q 013521 376 KNAP-----YVWVQFP 386 (441)
Q Consensus 376 ~~~~-----~~~~~~~ 386 (441)
... .+.+.++
T Consensus 309 -~~~~~~~~i~~i~l~ 323 (409)
T 3jzl_A 309 -WDAPRTDLIQSVSFH 323 (409)
T ss_dssp -TTSCCSSSCCEEECS
T ss_pred -CCCCCccEEEEEEeC
Confidence 332 5677776
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=189.05 Aligned_cols=255 Identities=16% Similarity=0.131 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHhhcc--CCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEE---cCCcHHHHHH-HHHhcCCCCEE
Q 013521 88 DIITSAMAEHAFALS--TVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFI---SDGAQSDISR-LQMLLGSNVTV 161 (441)
Q Consensus 88 ~~~~~al~~~~~~~~--~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~---t~G~~~al~~-l~~l~~~gd~V 161 (441)
+.+++++.+...... .....+.|+ ..|..+|++.+|+++ +.+ ..++ ++|+++|+.+ +..+++|||+|
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~-~~g~~~Le~~lA~l~----g~e--~alv~p~~~sGt~A~~~al~all~pGD~V 119 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGYN-DIGRDSLDRVYANIF----NTE--SAFVRPHFVNGTHAIGAALFGNLRPNDTM 119 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTT-CHHHHHHHHHHHHHH----TCS--EEEEETTCCSHHHHHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCC-chhHHHHHHHHHHHh----CCC--ceEEeCCCCcHHHHHHHHHHHhcCCCCEE
Confidence 566777776532211 112233453 347888999999886 543 3355 6777888886 78889999999
Q ss_pred EEeC-CCchhhHhHH-----------HHhccccccccccCccceeEEeecCCCCCccCC-CCC--C--CCccEEEEcC--
Q 013521 162 AVQD-PSFPAYIDTS-----------VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T--SRTDIIFFCS-- 222 (441)
Q Consensus 162 lv~~-p~y~~~~~~~-----------~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~--~~~~~v~i~~-- 222 (441)
++++ |.|+++...+ ...| .+++.++. +++..+++ +++ . +++|+|++++
T Consensus 120 l~~~~~~y~~~~~~~g~~~~~~~~~l~~~G------------~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~ 186 (427)
T 3hvy_A 120 MSICGMPYDTLHDIIGMDDSKKVGSLREYG------------VKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRST 186 (427)
T ss_dssp EECSSSCCGGGHHHHTCCTTCCSCCTGGGT------------CEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSC
T ss_pred EEeCCCCchhHHHHhccccchhhhHHHHcC------------CEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCC
Confidence 9999 9999876433 3344 47888877 32222221 111 2 6899999998
Q ss_pred --CCCccccCCCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc-ceeEE
Q 013521 223 --PNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG-VRLGW 297 (441)
Q Consensus 223 --p~NPtG~~~~~~~~~~i~~~a~~--~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~ 297 (441)
|+||||.+ .++++|+++|++ +|+++|+|++|+.+.+...|.. . +.+++++|+||.+|.+| .+.||
T Consensus 187 gyp~nptg~v---~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~---~----gaDiv~~S~sK~lgg~g~~~GG~ 256 (427)
T 3hvy_A 187 GYGWRKSLRI---AEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTD---V----GADIIAGSLIKNIGGGIATTGGY 256 (427)
T ss_dssp CSSSSCCCCH---HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGG---G----TCSEEEEETTSGGGTTTCCSCEE
T ss_pred CCCCCccccH---HHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcc---c----CCeEEEECCcccccccccceEEE
Confidence 88998765 569999999999 8999999999987664322221 1 23499999999998433 56699
Q ss_pred EEeeccccccCCchhHHHHHHHHhhhcCC--C-cHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNG--A-SNIV-QAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN 373 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 373 (441)
+++++++ ++.+.........+ . +.+. ...+. .+...+..+.++..+++.++.+.|+++|+++.
T Consensus 257 i~~~~~l--------i~~l~~~~~~~~~g~~~~~~~~~a~~~~-----~gl~~~~~r~~~~~~~a~~la~~L~~~g~~V~ 323 (427)
T 3hvy_A 257 IAGKEEY--------VTQATFRVTVPGIGGECGSTFGVMRSLY-----EGLFMAPHVTIEAVKGAVFCARIMELAGFDVL 323 (427)
T ss_dssp EEECHHH--------HHHHHHHHSCTTTGGGCCCCTTCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEECHHH--------HHHHHHHhhcCCcccccCCCHHHHHHHH-----HhHhHHHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence 9998877 45555433211111 1 1111 12122 22333466778888999999999999998886
Q ss_pred CCCCce-----EEEEEcC
Q 013521 374 GGKNAP-----YVWVQFP 386 (441)
Q Consensus 374 ~~~~~~-----~~~~~~~ 386 (441)
+. .+. .+.+.+.
T Consensus 324 p~-~~~~~~~li~~~~l~ 340 (427)
T 3hvy_A 324 PK-YNDKRTDIIQAIKFN 340 (427)
T ss_dssp SC-TTSCCSSSEEEEECS
T ss_pred CC-CCCCCceEEEEEeCC
Confidence 53 333 6777775
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=188.16 Aligned_cols=325 Identities=12% Similarity=0.080 Sum_probs=215.3
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC----------CcEEEcCCcHHHHHH-HHHhc
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG----------DEIFISDGAQSDISR-LQMLL 155 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~----------~~I~~t~G~~~al~~-l~~l~ 155 (441)
|..+.+.+..++. .....|...++..++++++++|+.+.++.+. ...++|+|+++++.+ +....
T Consensus 92 ~~~~~~~~~~~~n-----~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar 166 (481)
T 4e1o_A 92 PSLLGDMLADAIN-----CLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAAR 166 (481)
T ss_dssp HHHHHHHHHHHHC-----CCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-----cccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHH
Confidence 4455566666654 3445787788999999999999988666653 267889998888765 43321
Q ss_pred -------------------CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC----
Q 013521 156 -------------------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST---- 211 (441)
Q Consensus 156 -------------------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~---- 211 (441)
.+++.|+++.++|.++...+...| .+++.+|++.++.++++ +++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g------------~~~~~v~~~~~~~~d~~~Le~~i~~ 234 (481)
T 4e1o_A 167 KNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISL------------VKMKFLPVDDNFSLRGEALQKAIEE 234 (481)
T ss_dssp HHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHT------------CEEEEECCCTTSCCCHHHHHHHHHH
T ss_pred HHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCC------------CceEEEEcCCCCcCCHHHHHHHHHH
Confidence 257899999999999999988877 58999998644333222 111
Q ss_pred ----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCCCcceeEEEecCCc
Q 013521 212 ----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSK 286 (441)
Q Consensus 212 ----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK 286 (441)
...+.+|+++.++|+||.+-+ +++|+++|++||+++++|++|+...... ..... ..+......+..+++|
T Consensus 235 ~~~~g~~~~~vv~~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~--~~gi~~aDsi~~~~hK 309 (481)
T 4e1o_A 235 DKQRGLVPVFVCATLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGF--LKGIEYADSFTFNPSK 309 (481)
T ss_dssp HHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHH
T ss_pred HHhCCCCcEEEEEecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHH--hcCcccCCEEEEChHH
Confidence 012667788899999999877 8899999999999999999998653321 11111 1111122467789999
Q ss_pred ccCCccceeEEEEeeccccccCCchhHHHHH---------HHHhhhcC---CCcHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013521 287 FAGFTGVRLGWTVVPEELRYSNGYPVIKDFN---------RIVCTCFN---GASNIVQAGGLACLSPDGFQALRTVIDYY 354 (441)
Q Consensus 287 ~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 354 (441)
+++. ...+|++++.++....+.......+. ........ ....+.+.+++..+ +.+.++++.++.
T Consensus 310 ~l~~-p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~---g~~g~~~~~~~~ 385 (481)
T 4e1o_A 310 WMMV-HFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSF---GVKNLQAHVRHG 385 (481)
T ss_dssp HSSC-CSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hcCC-CCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHh---HHHHHHHHHHHH
Confidence 9974 46688887766542100000000000 00000000 11244455555544 345568888999
Q ss_pred HHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcCCC--ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec---CHH
Q 013521 355 KENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGS--SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG---HRE 428 (441)
Q Consensus 355 ~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~---~~~ 428 (441)
.++++++.+.|++. |+++..++..+++++++++. ...++.+++.++..+.+.|+.. .+..++|+++.+ +++
T Consensus 386 ~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~g~~~lR~~~~~~~tt~~ 462 (481)
T 4e1o_A 386 TEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATI---QDKLIIRFTVTSQFTTRD 462 (481)
T ss_dssp HHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEE---TTEEEEEEECCCTTCCHH
T ss_pred HHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEE---CCEEEEEEEeCCCCCCHH
Confidence 99999999999987 89887766788899998642 2456777777763355555432 235689999643 689
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|+++
T Consensus 463 di~~~~~~i~~~ 474 (481)
T 4e1o_A 463 DILRDWNLIRDA 474 (481)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=189.25 Aligned_cols=255 Identities=19% Similarity=0.178 Sum_probs=162.6
Q ss_pred CcHHHHHHHHHHHhhhCCCCCC--cEEEcCCcHHHHHH-HHHhcCCCCEEEEeC-CCchhhHhHHHHhcc-ccccccccC
Q 013521 115 GNMALRTAIADKFYKDMGIEGD--EIFISDGAQSDISR-LQMLLGSNVTVAVQD-PSFPAYIDTSVIVGQ-AGKFLKETG 189 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~--~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~-p~y~~~~~~~~~~g~-~~~~~~~~~ 189 (441)
+..++++.++++ ++.+.. +|++++| ++|+.. +..++++||+|++++ |.|..+...+...|. +..+...+
T Consensus 66 ~~~~l~~~la~~----~g~~~~~~~i~~~sG-t~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G- 139 (431)
T 3ht4_A 66 GRDTLEKVYADV----FGAEAGLVRPQIISG-THAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYN- 139 (431)
T ss_dssp HHHHHHHHHHHH----TTCSEECCBTTSCSH-HHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGT-
T ss_pred hHHHHHHHHHHH----hCCCcccccceeeCH-HHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcC-
Confidence 444555555555 465433 3346654 788887 677899999999998 999998766543210 00000000
Q ss_pred ccceeEEeecCCCCCccCCCCC-----CCCccEEEEc-CCCCccccCCCHHHHHHHHHHHHH--cCcEEEEccccccccc
Q 013521 190 KYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC-SPNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYIT 261 (441)
Q Consensus 190 ~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a~~--~~~~ii~De~~~~~~~ 261 (441)
.+++.++.++++ ..|++. .+++++|+++ +||||+|..++.+++++|+++|++ +|+++|+|++|+.+.+
T Consensus 140 --~~~~~v~~~~~~--~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~ 215 (431)
T 3ht4_A 140 --IGYNAVPLTEGG--LVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIE 215 (431)
T ss_dssp --CEEEECCBCTTS--SBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSS
T ss_pred --CEEEEeCCCCCC--CcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhcc
Confidence 588888887643 333221 3689999999 689999999999999999999999 9999999999998775
Q ss_pred CCCCCcccccCCCcceeEEEecCCcccCC-ccceeEEEEeeccccccCCchhHHHHHHHHhhhcC----CCcHHHHHHHH
Q 013521 262 DPSPRSIYEIPGAREVAIEISSFSKFAGF-TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFN----GASNIVQAGGL 336 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~i~i~S~SK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~ 336 (441)
...+.. . +.+++++|+||.+|. .+...||+++++++ ++.+......... +++.....++.
T Consensus 216 ~~~~~~---~----g~Di~~~S~sK~lgg~~~~~GG~v~~~~~l--------i~~l~~~~~~~~~g~~~~~~~~~~~~~~ 280 (431)
T 3ht4_A 216 EQEPCH---V----GADLMAGSLIKNPGGGIVKTGGYIVGKEQY--------VEACAYRLTSPGIGAEAGASLYSLQEMY 280 (431)
T ss_dssp SCCGGG---T----TCSEEEEETTSGGGTTTCSSCEEEEECHHH--------HHHHHHHHSCTTTTTSCSCCCSCSHHHH
T ss_pred CCCccc---c----CCeEEEcCccccCCCCCCCceEEEEecHHH--------HHHHHHHhccCCcccccCccHHHHHHHH
Confidence 433221 1 234999999999652 11334999999877 3455443322111 11111112122
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCC----ceEEEEEcCCC-ChHHHHHHHHH
Q 013521 337 ACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKN----APYVWVQFPGS-SSWDVFAEILE 399 (441)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----~~~~~~~~~~~-~~~~~~~~ll~ 399 (441)
.. ...+..+.++..++++++.+.|+++|+++.+.+. +..+.+.++.. ...++++.+.+
T Consensus 281 ~~-----l~~~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~~~~~~~~~~l~~ 343 (431)
T 3ht4_A 281 QG-----FFLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAIQY 343 (431)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCHHHHHHHHHHHHH
T ss_pred hH-----hhhHHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCHHHHHHHHHHHHh
Confidence 22 2334667788888999999999998887754322 22567777632 12344455443
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=173.80 Aligned_cols=319 Identities=11% Similarity=0.111 Sum_probs=205.0
Q ss_pred CCCCcHHHHHHHHHHHhhccC-CCCC---CCCCC--CcCcHHHHHHHHHHHhhhCCCCC-CcEEE-cCCcHHHHHH-HHH
Q 013521 83 TQPIPDIITSAMAEHAFALST-VKGY---KGYGA--EQGNMALRTAIADKFYKDMGIEG-DEIFI-SDGAQSDISR-LQM 153 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~-~~~~---~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~-~~I~~-t~G~~~al~~-l~~ 153 (441)
..+.|+.|++++.+.+.+... ..+. .+.++ ..-..+.|+.+++++ ++++ ++|++ |+|+|+++++ +..
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll----~~~~~~evif~t~~~T~a~n~a~~~ 96 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELL----AVPDNYKVIFLQGGGCGQFSAVPLN 96 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh----CCCCCCeEEEEcCchHHHHHHHHHh
Confidence 467899999999998865442 1111 11111 123455677777775 7764 57888 5899999998 677
Q ss_pred hcCC--CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC-C--CCCCccEEEEcCCCCccc
Q 013521 154 LLGS--NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-S--TTSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 154 l~~~--gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-~--~~~~~~~v~i~~p~NPtG 228 (441)
++.+ ||+|++..-++.+. .+...+.+.| ..++.++.+.+....++. + ..+++++|.+++-.|.||
T Consensus 97 l~~~~~Gd~v~~~~~g~~~~-~~~~~a~~~G---------~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG 166 (377)
T 3e77_A 97 LIGLKAGRCADYVVTGAWSA-KAAEEAKKFG---------TINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHG 166 (377)
T ss_dssp HGGGSTTCEEEECCCSHHHH-HHHHHHTTTS---------EEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTT
T ss_pred ccCCCCCCeEEEEECCHHHH-HHHHHHHHhC---------CceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchh
Confidence 8755 89998877777664 3444444333 356666765443433331 1 147889999888888999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccC
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN 308 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~ 308 (441)
++.|. +|+++|+++++|.+.+-. ..|..+..+ + +++.|..|++|.+| +|+++++++++...
T Consensus 167 ~~~pi--------i~~~~~~~~~vD~~q~~g---~~~id~~~~----~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~ 227 (377)
T 3e77_A 167 VEFDF--------IPDVKGAVLVCDMSSNFL---SKPVDVSKF----G--VIFAGAQKNVGSAG--VTVVIVRDDLLGFA 227 (377)
T ss_dssp EECSS--------CCCCTTCCEEEECTTTTT---SSCCCGGGC----S--EEEEEGGGTTSCTT--CEEEEEETTSCSCC
T ss_pred eEchh--------hhccCCCEEEEEcccccC---CCCCchhhc----C--EEEEecccccCCCc--cEEEEEcHHHHhhc
Confidence 99995 367899999999998732 113344333 2 46788999999777 78888888875321
Q ss_pred C---chhHHHHHHHH--hhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhC-CCeeeCC----CC
Q 013521 309 G---YPVIKDFNRIV--CTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSL-GLKVNGG----KN 377 (441)
Q Consensus 309 ~---~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~ 377 (441)
. +...+ +.... ....++++.....+..++++--... .++.+.++.++..+++++.|+++ |+...+. ..
T Consensus 228 ~~~~p~~~~-~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs 306 (377)
T 3e77_A 228 LRECPSVLE-YKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRS 306 (377)
T ss_dssp CTTSCGGGC-HHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBC
T ss_pred cCCCCchhh-HHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcC
Confidence 1 11111 11111 1223444554444444444311112 35888889999999999999988 7775321 12
Q ss_pred ceEEEEEcCCCCh-----HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 378 APYVWVQFPGSSS-----WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 378 ~~~~~~~~~~~~~-----~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+..+.+.+++.+. ..++..+. ++||.+.+|.. ..+.+|+|++ .++++++.+++.|+++
T Consensus 307 ~~ivsf~~~~~~~~~~~~~~~l~~l~-~~Gi~~~~g~~----~~g~iRiS~~~~~t~edId~l~~al~~~ 371 (377)
T 3e77_A 307 KMNIPFRIGNAKGDDALEKRFLDKAL-ELNMLSLKGHR----SVGGIRASLYNAVTIEDVQKLAAFMKKF 371 (377)
T ss_dssp SSEEEEEESSTTCCHHHHHHHHHHHH-HTTEESCBCCT----TTCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCchhHHHHHHHHHH-HCCcEEeCCCC----cCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4467888875332 24555554 56999998863 2346999974 4899999999999876
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=186.74 Aligned_cols=296 Identities=13% Similarity=0.057 Sum_probs=186.7
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH-HHHhccccccccccC
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT-SVIVGQAGKFLKETG 189 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~~~~~~ 189 (441)
+..-..++++.+|+++ +.+ ..+++++|+++++.+ +.+++++||.|+++.|+|.++... +...|
T Consensus 171 ~~~~i~e~e~~lA~~~----gae-~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~G---------- 235 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVY----NAD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAG---------- 235 (730)
T ss_dssp TBTHHHHHHHHHHHHT----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTC----------
T ss_pred ChHHHHHHHHHHHHHH----CCC-cEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCC----------
Confidence 3445678899999885 665 458899999999887 788899999999999999998877 66667
Q ss_pred ccceeEEeecCCCC-C----ccC-CC-----CC--CCC------c----cEEEEcCCCCccccCCCHHHHHHHHHHHHHc
Q 013521 190 KYRNIVYMNCRPEN-N----FFP-DL-----ST--TSR------T----DIIFFCSPNNPTGHAATWQQLKKLVEFAKAN 246 (441)
Q Consensus 190 ~~~~v~~v~~~~~~-~----~~~-~~-----~~--~~~------~----~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~ 246 (441)
.+++.++.+.+. + +++ ++ ++ ..+ + +++++++| ||||.+.+ +++|+++|++|
T Consensus 236 --a~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~ 309 (730)
T 1c4k_A 236 --GRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHL 309 (730)
T ss_dssp --CEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGG
T ss_pred --CEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHc
Confidence 466766654220 1 111 12 21 122 3 89999999 68999998 88999999999
Q ss_pred CcEEEEccccccc-ccCCC-C-Cccccc---CCCcceeEEEecCCcccCCcccee-EEEEeeccccccCCchh-HHHHHH
Q 013521 247 GSIIVYDSAYAAY-ITDPS-P-RSIYEI---PGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYSNGYPV-IKDFNR 318 (441)
Q Consensus 247 ~~~ii~De~~~~~-~~~~~-~-~~~~~~---~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~~~~~~-~~~~~~ 318 (441)
|+++++|++|+.. .+.+. + .+.... ....++++++.|+||++ +|++. |+++++++.+......+ ...+..
T Consensus 310 g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~ 387 (730)
T 1c4k_A 310 CDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNN 387 (730)
T ss_dssp BSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHH
T ss_pred CCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHH
Confidence 9999999999753 23321 1 111111 11134679999999986 46664 56667665531100000 122222
Q ss_pred HHh-hhcCCCcHHHHH---HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCCC----------------
Q 013521 319 IVC-TCFNGASNIVQA---GGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-L-GLKVNGGK---------------- 376 (441)
Q Consensus 319 ~~~-~~~~~~~~~~~~---a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~---------------- 376 (441)
... ....+++..... ++...+.. +.-....+++.++.+.+++.|++ . |+++..+.
T Consensus 388 ~~~~~~stsp~~~~iaal~aA~~~l~~---~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~ 464 (730)
T 1c4k_A 388 SFNLFMSTSPFYPMYAALDVNAAMQEG---EAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMA 464 (730)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHT
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHhhhCCCeEEcccccccccccccccccccc
Confidence 211 112223333332 23333332 12244566777788888888887 3 77764431
Q ss_pred ---------------------Cc-eE-----EEEEcCC------------CChHHHHHHHHHhcCeEEeCCCCcCCCCCC
Q 013521 377 ---------------------NA-PY-----VWVQFPG------------SSSWDVFAEILEKTHILTIPGSGFGPGGNE 417 (441)
Q Consensus 377 ---------------------~~-~~-----~~~~~~~------------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 417 (441)
.+ ++ +.+.+++ ....++.+.|.+ +||.+.+. +..
T Consensus 465 ~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e-~GI~v~~~------~~~ 537 (730)
T 1c4k_A 465 NNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRD-HGIIPEKS------DLN 537 (730)
T ss_dssp TCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHH-TTCCCSEE------CSS
T ss_pred ccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHH-CCcEEEEC------CCC
Confidence 11 12 5666642 344566666555 49988653 346
Q ss_pred eEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 418 HIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 418 ~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+|+++ +.++++++.+++.|+++
T Consensus 538 ~ir~~~s~g~t~e~i~~Ll~aL~~i 562 (730)
T 1c4k_A 538 SILFLMTPAETPAKMNNLITQLLQL 562 (730)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 789886 45889999999998764
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-19 Score=183.89 Aligned_cols=166 Identities=14% Similarity=0.118 Sum_probs=119.8
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccce
Q 013521 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN 193 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~ 193 (441)
-..++++.+++++ +.+ +.+++++|+++++.+ +.+++++||.|+++.|+|.++...+...| .+
T Consensus 206 ~v~~~ee~la~l~----G~d-~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G------------~~ 268 (755)
T 2vyc_A 206 AFGESEKYAARVF----GAD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTG------------AK 268 (755)
T ss_dssp HHHHHHHHHHHHH----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHC------------CE
T ss_pred HHHHHHHHHHHHh----CCC-ceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcC------------CE
Confidence 4466677777765 654 568899999999887 78889999999999999999988888888 57
Q ss_pred eEEeecCCCC-Cc--cC-----CCC---C----CCCc--------cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEE
Q 013521 194 IVYMNCRPEN-NF--FP-----DLS---T----TSRT--------DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSII 250 (441)
Q Consensus 194 v~~v~~~~~~-~~--~~-----~~~---~----~~~~--------~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~i 250 (441)
++.++.+.+. +. .. +.+ + .+++ ++++++|| ||||.+.+ +++|+++|++||+++
T Consensus 269 ~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~l 344 (755)
T 2vyc_A 269 PVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRL 344 (755)
T ss_dssp EEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEE
T ss_pred EEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEE
Confidence 8888775421 11 01 211 1 1233 48999998 79999998 889999999999999
Q ss_pred EEccccccc-ccCCC---CCcccc--cCCCcceeEEEecCCcccCCccce-eEEEEeecc
Q 013521 251 VYDSAYAAY-ITDPS---PRSIYE--IPGAREVAIEISSFSKFAGFTGVR-LGWTVVPEE 303 (441)
Q Consensus 251 i~De~~~~~-~~~~~---~~~~~~--~~~~~~~~i~i~S~SK~~~~~G~r-~G~l~~~~~ 303 (441)
++|++|+.. .+.+. ..++.. .+-..+++|++.|+||++ +|++ .|+++++++
T Consensus 345 ivDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~ 402 (755)
T 2vyc_A 345 HFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREG 402 (755)
T ss_dssp EEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECC
T ss_pred EEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCc
Confidence 999999853 22221 112211 111245788999999986 5666 677778766
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-18 Score=162.65 Aligned_cols=320 Identities=15% Similarity=0.183 Sum_probs=200.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccC-CCCCC---CCCC--CcCcHHHHHHHHHHHhhhCCCC-CCcEEE-cCCc
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALST-VKGYK---GYGA--EQGNMALRTAIADKFYKDMGIE-GDEIFI-SDGA 144 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~-~~~~~---~Y~~--~~g~~~lr~~ia~~l~~~~~~~-~~~I~~-t~G~ 144 (441)
.+++|+-|. .+.|+.++++|.+.+.+... ..+.+ +.++ ..-..+.|+.+++++ +++ +++|++ |+|+
T Consensus 5 ~~~~f~pgp--t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll----~~~~~~~v~f~t~~~ 78 (361)
T 3m5u_A 5 RKINFSAGP--STLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLY----ELNDDYEVLFLQGGA 78 (361)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSHH
T ss_pred ceEeecCCC--CCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEEcCcH
Confidence 467777664 46789999999998765432 11111 1111 123455667777775 775 458888 9999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCc--cCCCCCCCCccEEE
Q 013521 145 QSDISR-LQMLLGSNVTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF--FPDLSTTSRTDIIF 219 (441)
Q Consensus 145 ~~al~~-l~~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~--~~~~~~~~~~~~v~ 219 (441)
|+++++ +..++ +||++.+..-+..+. ...++..| .++..++.+.++.+ .++.+-.+++++|.
T Consensus 79 T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G------------~~v~~~~~~~~g~~~~~~~~~l~~~t~lv~ 145 (361)
T 3m5u_A 79 SLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILG------------VNVKTVASSEESNFDHIPRVEFSDNADYAY 145 (361)
T ss_dssp HHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTT------------CCEEEEEECTTTTSCSCCCCCCCTTSSEEE
T ss_pred HHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcC------------CceEEEecccCcCCCcCChhhcCCCCCEEE
Confidence 999998 67777 888663333233332 22333344 48888888765432 22222236789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+++..|.||.+++. | ++ +|+++++|.+.+-.. .|..+.. ..+++.|..|++|.+| +|+++
T Consensus 146 ~~~~e~~tG~~~~~-----i---~~-~~~~~~vD~~q~~g~---~~id~~~------~d~~~~s~~K~~gp~G--~g~l~ 205 (361)
T 3m5u_A 146 ICSNNTIYGTQYQN-----Y---PK-TKTPLIVDASSDFFS---RKVDFSN------IALFYGGVQKNAGISG--LSCIF 205 (361)
T ss_dssp EESEETTTTEECSS-----C---CC-CSSCEEEECGGGTTS---SCCCCTT------EEEEEEETTTTSSCTT--CEEEE
T ss_pred EeCCCCCcceeCCc-----c---cc-cCCEEEEEcccccCC---CCCCccc------CCEEEEechhccCCCc--cEEEE
Confidence 98888899999772 3 23 499999999887321 1333321 2378889999998666 88888
Q ss_pred eecccccc----CCchhHHHHHHH--HhhhcCCCcHHHHHHHHHhc---CCC-cHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 300 VPEELRYS----NGYPVIKDFNRI--VCTCFNGASNIVQAGGLACL---SPD-GFQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 300 ~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l---~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
++++++.. ..+...+ +... ....+.+++.....+..+++ .+. + ++.+.++.++..+++++.|++++
T Consensus 206 ~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG---~~~i~~~~~~l~~~l~~~L~~~~ 281 (361)
T 3m5u_A 206 IRKDMLERSKNKQIPSMLN-YLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGG---LDKVHEKNSQKATMLYECIDLSN 281 (361)
T ss_dssp EEHHHHHHHHTCCCCGGGC-HHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHHTST
T ss_pred EcHHHHhhhcCCCCCceee-hHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHHHHHCC
Confidence 88877421 0111111 1111 11223344544443333333 333 3 47788888999999999999885
Q ss_pred -C-eeeCC---CCceEEEEEcCC-C-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 370 -L-KVNGG---KNAPYVWVQFPG-S-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 370 -~-~~~~~---~~~~~~~~~~~~-~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+ ....+ .....+.+.+++ . .+.++.. .++++||.+.+|... -+.+|+|+. +++++++.+++.|+++
T Consensus 282 g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~-~L~~~gI~~~~g~~~----~g~iRiS~~~~~t~edId~l~~al~~~ 356 (361)
T 3m5u_A 282 GFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVK-EAEEAGMIGLKGHRI----LGGIRASIYNALNLDQVKTLCEFMKEF 356 (361)
T ss_dssp TSEEESSCGGGBCSSEEEEEESSCTTHHHHHHH-HHHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeeeccCCHHHcCCeEEEEECCCchhhhHHHHH-HHHHCCCEEecCCCc----cCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 5 44322 123467778774 1 2235554 455669999887542 245999974 4899999999999875
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-18 Score=162.74 Aligned_cols=323 Identities=11% Similarity=0.122 Sum_probs=194.9
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccC-CCC---CCCCCC--CcCcHHHHHHHHHHHhhhCCCCC-CcEEE-cCCcH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALST-VKG---YKGYGA--EQGNMALRTAIADKFYKDMGIEG-DEIFI-SDGAQ 145 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~-~~~---~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~-~~I~~-t~G~~ 145 (441)
++.+.-|. .+.|+.++++|.+.+.+... ..+ ..+.++ ..-..+.|+.+|+++ ++++ ++|++ |+|+|
T Consensus 28 ~yl~~agp--t~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll----~~~~~~evif~t~~~T 101 (386)
T 3qm2_A 28 VFNFSSGP--AMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLL----NIPSNYKVLFCHGGGR 101 (386)
T ss_dssp CEECCSSS--CCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHH----TCCTTEEEEEEESCTT
T ss_pred CccccCCC--CCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEEcCCch
Confidence 34444442 46789999999887654321 111 111111 346788999999987 7754 57888 69999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecC--CCCC-ccCC-CCC--CCCccEE
Q 013521 146 SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCR--PENN-FFPD-LST--TSRTDII 218 (441)
Q Consensus 146 ~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~--~~~~-~~~~-~~~--~~~~~~v 218 (441)
+++++ +..++++||+|++..-++.+.. +...+...| ++..++.+ ..+. ..++ ++. .+++++|
T Consensus 102 ~a~n~ai~~l~~~gd~v~~~~~~~~~~~-~~~~a~~~G----------~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV 170 (386)
T 3qm2_A 102 GQFAGVPLNLLGDKTTADYVDAGYWAAS-AIKEAKKYC----------APQIIDAKITVDGKRAVKPMREWQLSDNAAYL 170 (386)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESSHHHHH-HHHHHTTTS----------EEEEEECEEEETTEEEECCGGGCCCCTTCSCE
T ss_pred HHHHHHHHhccCCCCeEEEEeCCHHHHH-HHHHHHHhC----------CeEEEecCcccCCCCCCchHHHhhcCCCCcEE
Confidence 99998 7888899999876555555532 333333211 46666665 3221 2222 221 3689999
Q ss_pred EEcCCCCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
.+++-.|.||.+ .| +++|. +|+++++|.+.+- ...|..+..+ + +.+.|..|++|.+| +|+
T Consensus 171 ~~~h~et~tG~~i~p---i~~i~-----~g~~~~vDa~qs~---g~~pidv~~~----~--~~~~s~hK~lGP~G--~g~ 231 (386)
T 3qm2_A 171 HYCPNETIDGIAIDE---TPDFG-----PEVVVTADFSSTI---LSAPLDVSRY----G--VIYAGAQKNIGPAG--LTL 231 (386)
T ss_dssp EECSEETTTTEECCC---CCCCC-----TTCCEEEECTTTT---TSSCCCGGGC----S--EEEEETTTTTCCTT--EEE
T ss_pred EEECCcCCcCEecCc---hhhhc-----CCCEEEEEccccc---CCCCCCcccc----C--EEEEecccccCCCc--cEE
Confidence 888888889996 67 44443 7999999999873 2224444333 2 45688999998666 899
Q ss_pred EEeeccccccCC---chhHHHHHHH-Hh-hhcCCCc---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 298 TVVPEELRYSNG---YPVIKDFNRI-VC-TCFNGAS---NIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 298 l~~~~~~~~~~~---~~~~~~~~~~-~~-~~~~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
++++++++.... +...+ +... .. ....+++ ..+..+++..+.+. ..++...++.++.++++++.|++++
T Consensus 232 l~v~~~~~~~~~~~~p~~~~-~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~--gG~~~i~~~~~~l~~~l~~~l~~~~ 308 (386)
T 3qm2_A 232 VIVREDLLGKAHESCPSILD-YTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQ--GGVAAMHKINQQKAELLYGVIDNSD 308 (386)
T ss_dssp EEEEGGGCSCCCTTSCGGGC-HHHHHHC-------CCSHHHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred EEECHHHHhhhcccCCcHHH-HHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999988753211 11111 1111 11 1112223 33333344433322 0357888888999999999999887
Q ss_pred Cee-e-CC--CCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 370 LKV-N-GG--KNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 370 ~~~-~-~~--~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+.. . .+ .....+.+.+++ ..+.++... ++++||.+.+|... .+.+|+|++ +++++++.+++.|+++
T Consensus 309 ~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~-L~~~gI~~~~g~~~----~~~iRiS~~~~~t~edId~l~~~l~~~ 381 (386)
T 3qm2_A 309 FYRNDVAQANRSRMNVPFQLADNTLDKVFLEE-SFAAGLHALKGHRV----VGGMRASIYNAMPIEGVKALTDFMIDF 381 (386)
T ss_dssp SEECCBCGGGBCSSEEEEEESSGGGHHHHHHH-HHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcccCCCHHHcCceEEEEECCCccccHHHHHH-HHHCCCEEeCCCCC----cCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 522 1 11 223467788873 223455555 55669999887543 235999974 4899999999999875
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-17 Score=166.22 Aligned_cols=289 Identities=13% Similarity=0.078 Sum_probs=172.2
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCcc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 191 (441)
..-..++++.+|+++ |.+ ..+++++|++.++.+ +.++++|||.|+++.++|.++...+...|
T Consensus 194 ~g~i~eaE~~lA~~f----Ga~-~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsG------------ 256 (715)
T 3n75_A 194 SGPHKEAEQYIARVF----NAD-RSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSD------------ 256 (715)
T ss_dssp BTHHHHHHHHHHHHH----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSC------------
T ss_pred cHHHHHHHHHHHHHh----CCC-CceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcC------------
Confidence 334578888888886 543 467789998888876 78899999999999999999999988888
Q ss_pred ceeEEeecCCCCCccC---------CCC---C----CCCc---cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEE
Q 013521 192 RNIVYMNCRPENNFFP---------DLS---T----TSRT---DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVY 252 (441)
Q Consensus 192 ~~v~~v~~~~~~~~~~---------~~~---~----~~~~---~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 252 (441)
.++++++.+.+ .+.. +.+ + .+++ +++++++| ||+|.+++ +++|+++|+++ .+++
T Consensus 257 a~pv~v~~~~~-~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~--~liv 329 (715)
T 3n75_A 257 VTPIYFRPTRN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK--SIHF 329 (715)
T ss_dssp CEEEEECCCBC-TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS--EEEE
T ss_pred CEEEEEecccc-ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcC--cEEE
Confidence 57888876532 2221 211 1 1333 48999999 99999999 66777777665 3799
Q ss_pred cccccccc-cCCC-C-CcccccCCCccee-EEEecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHHHHhhhc-CC
Q 013521 253 DSAYAAYI-TDPS-P-RSIYEIPGAREVA-IEISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNRIVCTCF-NG 326 (441)
Q Consensus 253 De~~~~~~-~~~~-~-~~~~~~~~~~~~~-i~i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 326 (441)
||+|+... +.+. + .+........|.+ +++.|+||+++ |+ ..||+.++++.. ...+........ .+
T Consensus 330 DEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~-------~~~~~~~~~~~~STS 400 (715)
T 3n75_A 330 DSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVN-------EETFNEAYMMHTTTS 400 (715)
T ss_dssp ECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCC-------HHHHHHHHHHTSCSS
T ss_pred ccccccccccCCccccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhh-------HHHHHHHHHhhcCCC
Confidence 99998643 3321 1 1111111112443 67999999975 54 468999887642 234443333332 23
Q ss_pred CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-----C--CeeeCCC-----------------------
Q 013521 327 ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-----G--LKVNGGK----------------------- 376 (441)
Q Consensus 327 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g--~~~~~~~----------------------- 376 (441)
++.+...+..+++..-....-+.++++..++.+.+++.|+++ | +++..+.
T Consensus 401 psy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~ 480 (715)
T 3n75_A 401 PHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNID 480 (715)
T ss_dssp CCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCC
T ss_pred chHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccc
Confidence 444443333333321000011334556666666666666544 1 2222211
Q ss_pred -Cce-E----EEEEcCCC----------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHH
Q 013521 377 -NAP-Y----VWVQFPGS----------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLK 438 (441)
Q Consensus 377 -~~~-~----~~~~~~~~----------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~ 438 (441)
+.. + +.+.+++. .+...+...|+++||.+--.+ ...|=+- ++.++++++.++++|.
T Consensus 481 ~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d------~~~vl~l~s~g~~~~~~~~L~~aL~ 554 (715)
T 3n75_A 481 NEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG------PYNLLFLFSIGIDKTKALSLLRALT 554 (715)
T ss_dssp SSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE------TTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC------CCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 011 1 55555431 122344445567798875432 2334333 3557888888888876
Q ss_pred hh
Q 013521 439 NF 440 (441)
Q Consensus 439 ~~ 440 (441)
++
T Consensus 555 ~~ 556 (715)
T 3n75_A 555 DF 556 (715)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-15 Score=147.32 Aligned_cols=328 Identities=12% Similarity=0.098 Sum_probs=191.3
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.+||+..|- ..+ ..+|.+.+++.+.+.... ....+..-..++.+.|++.+ + ..+.+.+++++++
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~-----~~~~~~~~~~~lae~l~~~~----p-~~~~v~f~~SGsE 154 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI-----NLTGHNLLEGRLARLICERF----P-QIEQLRFTNSGTE 154 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS-----CCCSEESSHHHHHHHHHHHS----T-TCSEEEEESSHHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC-----CccCCcHHHHHHHHHHHHhC----C-CCCEEEEeCchHH
Confidence 467889986553 333 367999999999887421 11122344566777777664 3 4689999999999
Q ss_pred HHHH-HH--HhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-CCCccEEEEcC
Q 013521 147 DISR-LQ--MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-TSRTDIIFFCS 222 (441)
Q Consensus 147 al~~-l~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~~~~~~v~i~~ 222 (441)
|... +. ......++|+..+.+|++....+........ .. .....+|.++.......+++ .+++.+|+ ..
T Consensus 155 A~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~-----~~-~~~~~~p~nd~~~l~~~l~~~~~~iAavI-vE 227 (454)
T 4ao9_A 155 ANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTT-----VP-FDFLVLPYNDAQTARAQIERHGPEIAVVL-VE 227 (454)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTS-----CC-SEEEEECTTCHHHHHHHHHHTGGGEEEEE-EC
T ss_pred HHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCcc-----CC-CCcccCCCchHHHHHHHHhhcCCceEEEE-ec
Confidence 9875 42 2223457899999999885432211110000 00 13333433211110001111 23455555 46
Q ss_pred C-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 223 P-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 223 p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
| +...|.+ .+++.+++|.++|++||+++|.||++.. ..+.......+.-.|| +-+++|.+| .|+.+|.+.+
T Consensus 228 Pv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a~e~~gv~PD----i~t~gK~lg-gG~Piga~~~ 300 (454)
T 4ao9_A 228 PMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGLANKLGIRSD----LTTLGKYIG-GGMSFGAFGG 300 (454)
T ss_dssp SEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCHHHHHTCCCS----EEEEEGGGG-TTSSCEEEEE
T ss_pred cccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccchhccCCCCc----EEEeccccC-CCCcceeeee
Confidence 6 5557755 5688999999999999999999999873 1121111112222345 336899998 8999999999
Q ss_pred eccccccCCchhHHHHHH----HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh----CCCee
Q 013521 301 PEELRYSNGYPVIKDFNR----IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS----LGLKV 372 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~ 372 (441)
+++++ +.+.. .....+.+.++++..|+++.|+.-.. ++..++.+++.++|.+.|++ +++..
T Consensus 301 ~~ei~--------~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~~~~~ 369 (454)
T 4ao9_A 301 RADVM--------ALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT---PEAAGALAERGEALRARLNALCANEGVAM 369 (454)
T ss_dssp CHHHH--------GGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHHHHTBSC
T ss_pred HHHHH--------HHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 88874 22211 11122344678888888887762211 33344455555555555544 34322
Q ss_pred eCCCCceEEEEEcCC-----------CCh---HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHH
Q 013521 373 NGGKNAPYVWVQFPG-----------SSS---WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLK 438 (441)
Q Consensus 373 ~~~~~~~~~~~~~~~-----------~~~---~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~ 438 (441)
....-|..+.+.+.. .+. ..++..++++ ||.+.|. +++.++...+++++++++++|+
T Consensus 370 ~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~--------~~~~~s~~~T~~dId~~l~al~ 440 (454)
T 4ao9_A 370 QFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPR--------GFVVLSLPLTDADIDRYVAAIG 440 (454)
T ss_dssp EEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTT--------CEEECCTTCCHHHHHHHHHHHH
T ss_pred EEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCC--------CCEEEeCCCCHHHHHHHHHHHH
Confidence 111134455555521 011 2344556655 9999773 2455666678999999999998
Q ss_pred hhC
Q 013521 439 NFL 441 (441)
Q Consensus 439 ~~l 441 (441)
++|
T Consensus 441 ~~l 443 (454)
T 4ao9_A 441 SFI 443 (454)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-14 Score=135.60 Aligned_cols=342 Identities=13% Similarity=0.122 Sum_probs=205.2
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHH-hhhCCCCCC----cEEEcCCcHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKF-YKDMGIEGD----EIFISDGAQS 146 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l-~~~~~~~~~----~I~~t~G~~~ 146 (441)
-|+|=-.++ ..++.+.+++...+.+... .++. +|....-..+-.|.+|.-. .+.|+++.. ||-.-||+++
T Consensus 56 ~ieLIASEN--~~S~aV~~a~gS~ltnKYa-EGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~A 132 (490)
T 3ou5_A 56 GLELIASEN--FCSRAALEALGSCLNNKYS-EGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA 132 (490)
T ss_dssp SEECCTTCC--CCCHHHHHHHTSGGGTCCC-CC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred CceEecCCC--cCCHHHHHHhcCccccccc-CCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHH
Confidence 466665554 3568888888887764332 2222 2322222334445555443 347888876 8999999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCchhhHhHHH-----HhccccccccccCccceeEEeecCCCCCccCCCCC------CCCc
Q 013521 147 DISRLQMLLGSNVTVAVQDPSFPAYIDTSV-----IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRT 215 (441)
Q Consensus 147 al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~ 215 (441)
.+...+++++|||+|+..+..+.++..--. ..+..| ++.+.+..+++++++ ..|.++ ..+|
T Consensus 133 N~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg-------~~~~~~~Y~vd~~t~-~IDyd~~~~~A~~~kP 204 (490)
T 3ou5_A 133 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS-------IFFESMPYKLNPKTG-LIDYNQLALTARLFRP 204 (490)
T ss_dssp HHHHHHHHCC-CCCEECBC-----------------------------------CBCEETTTT-EECHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCEEEecccCCCCcccccccCCCccccccc-------ccccccccccCCCCC-cccHHHHHHHHhhcCC
Confidence 999999999999999999998877643221 111111 123566666666533 334332 3689
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCC-CCcccccCCCcceeEEEecCCcccCCccc
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
|+|+.-.-.+|- .++ .+++.++|++.|.++++|-+|.- +...+. |.|+. .. .++.+|.+|++ +|.
T Consensus 205 klIi~G~SaY~r--~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~-~A-----DvVTtTTHKTL--rGP 271 (490)
T 3ou5_A 205 RLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HA-----DIVTTTTHKTL--RGA 271 (490)
T ss_dssp SEEEECCSSCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TC-----SEEEEESSSTT--CSC
T ss_pred CeEEECCccCcc--ccC---HHHHHHHHhhcccEEEechhhhhhhhcccccCCccc-cc-----eEEeccccccc--cCC
Confidence 998865445543 345 77888888899999999999874 444443 43432 21 27889999998 799
Q ss_pred eeEEEEeeccccccC-------CchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHH
Q 013521 294 RLGWTVVPEELRYSN-------GYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 294 r~G~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L 365 (441)
|-|.+.++++..... ...+.+.+....-....+.+.+...|+.+.--.+.. ...+...++..++.+.|.+.|
T Consensus 272 rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L 351 (490)
T 3ou5_A 272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADAL 351 (490)
T ss_dssp SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 999999887531100 001234454433333344455555555544221211 345778888889999999999
Q ss_pred HhCCCeeeC-CCCceEEEEEcCC-CChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEe------ecCHHHHHHH
Q 013521 366 QSLGLKVNG-GKNAPYVWVQFPG-SSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSA------FGHREYISEA 433 (441)
Q Consensus 366 ~~~g~~~~~-~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~------~~~~~~~~~~ 433 (441)
.+.|+++.. ..+...+++++.+ ......++.+|++.||.+. |++. .+..++.|||+. +-.++++++.
T Consensus 352 ~~~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~-sp~~~SGiRiGTpa~TtRG~~e~dm~~I 430 (490)
T 3ou5_A 352 LERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRV 430 (490)
T ss_dssp HHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred HhCCCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCC-CCCCCCeeEECCHHHHhCCCCHHHHHHH
Confidence 999998853 3456679999852 2345667888888999987 5541 233467899994 2257888887
Q ss_pred HHHHHhh
Q 013521 434 CRRLKNF 440 (441)
Q Consensus 434 l~~l~~~ 440 (441)
.+.|.++
T Consensus 431 A~~I~~~ 437 (490)
T 3ou5_A 431 VDFIDEG 437 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-14 Score=137.65 Aligned_cols=343 Identities=13% Similarity=0.108 Sum_probs=199.9
Q ss_pred CCCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcH
Q 013521 70 PDARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~ 145 (441)
.++.++|+..| ...+ ..+|.+.+++.+.+.++. .....+.+.....+|.+.+++. .+. ..+.++++++++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~--~~~~~~~~~~~~~~lae~L~~~----~p~~~~~~v~f~~sGs 135 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT--HTCFMVTPYEGYVAVTEQLNRL----TPGDHAKRTVLFNSGA 135 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS--CCTTTTSCCHHHHHHHHHHHHH----SSCSSCEEEEEESSHH
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc--CcccCccCcHHHHHHHHHHHHh----CCCCCCcEEEEeCChH
Confidence 45678888765 3333 367899999999887653 1112222333444555555554 333 356799999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHh-ccccccc-cccCccceeEEeecCCCCCc-cCCCC---------
Q 013521 146 SDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKFL-KETGKYRNIVYMNCRPENNF-FPDLS--------- 210 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~-~~~~~~~~v~~v~~~~~~~~-~~~~~--------- 210 (441)
+|... + .........|+....+|++....+... +...... ........+..+|....... ..+..
T Consensus 136 EA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 215 (456)
T 4atq_A 136 EAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAI 215 (456)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHH
Confidence 99886 4 233345578999999999865444333 2211000 00000124445554221000 00100
Q ss_pred -------CCCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEE
Q 013521 211 -------TTSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEI 281 (441)
Q Consensus 211 -------~~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i 281 (441)
...++.+++ ..| +.-.|.+ .|++.+++|.++|++||+++|.||+...|...+.......+.-.|| +
T Consensus 216 ~~~e~~~~~~~iAAvi-vEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PD----i 290 (456)
T 4atq_A 216 TMIEKQIGGDQVAAII-IEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPD----I 290 (456)
T ss_dssp HHHHHHTCGGGEEEEE-ECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCS----E
T ss_pred HHHHHhhcCCceEEEE-eccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCc----h
Confidence 012445544 466 5556755 5788999999999999999999999997655543333333332455 3
Q ss_pred ecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
-+++|.+| .|+.+|.+++++++. +.+.......+++.++++..++.+.|+.-.. +.+.++.++.-+++
T Consensus 291 vt~gK~lg-gg~P~~av~~~~~i~--------~~~~~~~~~~Tf~gnpla~aaala~L~~i~~---~~l~~~~~~~g~~l 358 (456)
T 4atq_A 291 ITMAKGIA-GGLPLSAITGRADLL--------DAVHPGGLGGTYGGNPVACAAALAAIDTMEQ---HDLNGRARHIEELA 358 (456)
T ss_dssp EEECGGGG-TTSSCEEEEEEHHHH--------TTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHH
T ss_pred hhhhhccc-CcCCceeeEecHHHH--------hcccccCCCCCCCCChHHHHhhHHHHHHHhh---ccHHHHHHHHHHHH
Confidence 35889998 999999999988874 2222222234455788888888888862111 22333444444444
Q ss_pred HHHHHhC----CC---ee---eCCCCceEEEEEcCCC----C----hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE-
Q 013521 362 VDAFQSL----GL---KV---NGGKNAPYVWVQFPGS----S----SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS- 422 (441)
Q Consensus 362 ~~~L~~~----g~---~~---~~~~~~~~~~~~~~~~----~----~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls- 422 (441)
.+.|+++ .. .+ .. .-|.++-+++... . ...+...+++ +|+.+.+... ..+.|||.
T Consensus 359 ~~~L~~l~~~~~~~~~~~v~~VR-G~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~----~~~~irl~P 432 (456)
T 4atq_A 359 LGKLRELAAELSAGGGSVVGDIR-GRGAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGT----YGNVIRLLP 432 (456)
T ss_dssp HHHHHHHHHHCC-----CEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECT----TSCEEEECC
T ss_pred HHHHHHHHHhcccccCCceEEee-ecceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCC----CCCEEEEEC
Confidence 4444432 11 11 11 1366666776311 1 2245566665 4999887432 24679998
Q ss_pred -eecCHHHHHHHHHHHHhhC
Q 013521 423 -AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 423 -~~~~~~~~~~~l~~l~~~l 441 (441)
+..+++++++++++|.++|
T Consensus 433 pL~it~~~id~~l~~l~~al 452 (456)
T 4atq_A 433 PLVISDELLIDGLEVLAAAI 452 (456)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 4568999999999998864
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-13 Score=133.67 Aligned_cols=342 Identities=10% Similarity=0.060 Sum_probs=196.6
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|- ..+ ..+|.+.+++.+.+.++........+ ..+....+|+.|.+..+.+.+.|++++++++
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~-----~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsE 139 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGR-----MSDQTVMLSEKLVEVSPFDSGRVFYTNSGSE 139 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTE-----EEHHHHHHHHHHHHHSSCSSCEEEEESSHHH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccc-----cCHHHHHHHHHHHhhCCCCccEEEEeCchHH
Confidence 356788887664 222 36789999999988764311111111 1233444555555444556679999999999
Q ss_pred HHHH-HHH--hc-----CCC-CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC------CCCccC----
Q 013521 147 DISR-LQM--LL-----GSN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP------ENNFFP---- 207 (441)
Q Consensus 147 al~~-l~~--l~-----~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~------~~~~~~---- 207 (441)
|... +.. .. +++ ..|+...-+|++....+.....................++... .+....
T Consensus 140 A~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 219 (473)
T 4e3q_A 140 ANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVA 219 (473)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHH
Confidence 9886 421 11 233 5788899999986444333322111000000001233333211 100000
Q ss_pred ----CCCC-----CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 208 ----DLST-----TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 208 ----~~~~-----~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
++++ .++.-+.+|.-| +.-.|.+ .+++.+++|.++|++||+++|.||+...|...+.......+.-.||
T Consensus 220 ~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PD 299 (473)
T 4e3q_A 220 RLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPD 299 (473)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCS
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCC
Confidence 0010 122224455566 5556755 5678999999999999999999999998755443322223333455
Q ss_pred eeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHH-------hhhcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 277 VAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIV-------CTCFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
+-+++|.++ .| +.+|.+++++++. +.+.... ...+++.++++..++++.|+.-.. +
T Consensus 300 ----i~t~~K~l~-gG~~Pl~av~~~~~i~--------~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~---~ 363 (473)
T 4e3q_A 300 ----AIISSKNLT-AGFFPMGAVILGPELS--------KRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMN---E 363 (473)
T ss_dssp ----EEEECGGGG-TTSSCCEEEEECHHHH--------HHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHH---S
T ss_pred ----hHHhccccc-CCCCCcccccccHHHH--------HHhccccccccccccCCCCCCCcchhhhhhhhhhhhcc---c
Confidence 335899998 66 9999999998873 4443211 123345678888888888762111 2
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcC-CC----------C-hHHHHHHHHHhcCeEEeCCCCcC
Q 013521 349 TVIDYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFP-GS----------S-SWDVFAEILEKTHILTIPGSGFG 412 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~-~~----------~-~~~~~~~ll~~~gi~v~pg~~f~ 412 (441)
.+.++.++.-+++.+.|+++ .+.-.. .-|.++-+++. +. . ...+...+++ +|+++.|.
T Consensus 364 ~l~~~~~~~g~~l~~~L~~l~~~~~v~~vR-G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~---- 437 (473)
T 4e3q_A 364 GLAENVRRLAPRFEERLKHIAERPNIGEYR-GIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTD-LGLICRPL---- 437 (473)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTSTTEEEEE-EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEECEEE----
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCeeEEe-ecceEEEEEEecCccccccccccHHHHHHHHHHHHH-CCcEEEec----
Confidence 33444455555666665543 232222 13556666652 10 1 2345555554 59999873
Q ss_pred CCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 413 PGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 413 ~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+.+||+ +..+++++++++++|.++|
T Consensus 438 ---g~~i~l~PPL~it~~eid~~~~~l~~al 465 (473)
T 4e3q_A 438 ---GQSVVLCPPFILTEAQMDEMFDKLEKAL 465 (473)
T ss_dssp ---TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2478887 4568999999999988763
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-14 Score=148.73 Aligned_cols=205 Identities=13% Similarity=0.121 Sum_probs=128.1
Q ss_pred CccEEEEcCC--CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 214 RTDIIFFCSP--NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 214 ~~~~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
++.+|+ ..| ++..|.. .|++.+++|.++|++||+++|.||++..|...+.......+.-.+| +.++||.++
T Consensus 594 ~iaavi-~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PD----iitlsK~L~- 667 (831)
T 4a0g_A 594 HVGALI-IEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPD----IACFAKLLT- 667 (831)
T ss_dssp EEEEEE-ECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCS----EEEECGGGG-
T ss_pred cEEEEE-EecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCc----EEEEecccc-
Confidence 445544 456 7888876 4889999999999999999999999997755543222222322344 337999998
Q ss_pred cc-ceeEEEEeeccccccCCchhHHHHHH------HHhhhcCCCcHHHHHHHHHhcC---CCcH-HHHHHHHHHHHHH-H
Q 013521 291 TG-VRLGWTVVPEELRYSNGYPVIKDFNR------IVCTCFNGASNIVQAGGLACLS---PDGF-QALRTVIDYYKEN-A 358 (441)
Q Consensus 291 ~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~---~~~~-~~~~~~~~~~~~~-~ 358 (441)
.| +++|++++++++. +.+.. .....+.+.+++++.++.+.|+ ++.. +.+.++.+.+++. .
T Consensus 668 gG~~Plgav~~~~~i~--------~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~ 739 (831)
T 4a0g_A 668 GGMVPLAVTLATDAVF--------DSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWD 739 (831)
T ss_dssp TTSSCCEEEEECHHHH--------HTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSC
T ss_pred cCccCcEEEEECHHHH--------HHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 67 8999999998873 22211 1122334567888888888775 2111 1111111111110 1
Q ss_pred HHHHHHHHhC-CCeeeCCCCceEEEEEcCCC---------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecC
Q 013521 359 KIIVDAFQSL-GLKVNGGKNAPYVWVQFPGS---------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGH 426 (441)
Q Consensus 359 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~ 426 (441)
+.+.+.+.++ .+.... ..|.++.+++... ...++...+++ +||.+.|+ .+.|||+ +..+
T Consensus 740 ~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gv~v~p~-------g~~lrl~pp~~~t 810 (831)
T 4a0g_A 740 EELVQQISSHSAVQRVV-VIGTLFALELKADASNSGYASLYAKSLLIMLRE-DGIFTRPL-------GNVIYLMCGPCTS 810 (831)
T ss_dssp HHHHHHHHHSTTEEEEE-EETTEEEEEEC---------CHHHHHHHHHHHH-TTEECCCB-------TTEEEEECCTTCC
T ss_pred HHHHHHHhhCCCceeEe-ecccEEEEEEecCccccccchHHHHHHHHHHHH-CCcEEEec-------CCEEEEECCCCCC
Confidence 2344555555 333333 3567777777421 12345556554 59999874 2689998 4568
Q ss_pred HHHHHHHHHHHHhhC
Q 013521 427 REYISEACRRLKNFL 441 (441)
Q Consensus 427 ~~~~~~~l~~l~~~l 441 (441)
++++++++++|.+++
T Consensus 811 ~e~id~~~~~l~~~l 825 (831)
T 4a0g_A 811 PEICRRLLTKLYKRL 825 (831)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-11 Score=117.13 Aligned_cols=293 Identities=10% Similarity=0.031 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhhhCCCCC-CcEEEcCCcHHHHHH-HHHhcCC---C-CEEEEeCCCchhhHhHHHHhccccccccccCcc
Q 013521 118 ALRTAIADKFYKDMGIEG-DEIFISDGAQSDISR-LQMLLGS---N-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191 (441)
Q Consensus 118 ~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~al~~-l~~l~~~---g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 191 (441)
.|-+.++--+-+..|++. ...++++|+|.++.. ++..+++ | |.|+++..+|.++...+..+|
T Consensus 116 ~ltn~l~ld~L~~~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~G------------ 183 (501)
T 3hl2_A 116 KITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAG------------ 183 (501)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHHcCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcC------------
Confidence 333333333333346653 479999999977665 6777663 4 999999999999999999999
Q ss_pred ceeEEeecCCCC-CccCCCCC-------C-CCccEEEEcC-CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc-
Q 013521 192 RNIVYMNCRPEN-NFFPDLST-------T-SRTDIIFFCS-PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI- 260 (441)
Q Consensus 192 ~~v~~v~~~~~~-~~~~~~~~-------~-~~~~~v~i~~-p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~- 260 (441)
+++++++...+. .+..+++. . .+..++++++ +.|-.|.+-+ +++|+++|++||+++++|++|+-..
T Consensus 184 l~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~ 260 (501)
T 3hl2_A 184 FEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQSS 260 (501)
T ss_dssp CEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCH
T ss_pred CeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhhh
Confidence 466666552211 22233221 1 1333444444 4554445455 9999999999999999999998533
Q ss_pred cCC-CCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhc
Q 013521 261 TDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL 339 (441)
Q Consensus 261 ~~~-~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 339 (441)
+.. .|.+...+. .-++++.|..|.+- .-+..|.+...++-. .+.+... .....++.++....+ .+
T Consensus 261 ~~~~lp~sA~~~G---rAD~vVqS~HK~ll-vpIGG~ii~~~d~e~-------l~~~~~~--yPGr~S~Spsldl~~-tL 326 (501)
T 3hl2_A 261 KCMHLIQQGARVG---RIDAFVQSLDKNFM-VPVGGAIIAGFNDSF-------IQEISKM--YPGRASASPSLDVLI-TL 326 (501)
T ss_dssp HHHHHHHHHHHHS---CCCEEEEEHHHHHC-CCSSCEEEEESCHHH-------HHHHHHT--SCSCBCSHHHHHHHH-HH
T ss_pred hhhhhHHHHHhcC---CCcEEEecccccce-eecCceEEEeCCHHH-------HHHHHHh--CCCCCCCcHHHHHHH-HH
Confidence 111 123333331 12378999999984 434434444444321 2333211 111112333332233 33
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCC-CceEEEEEcCCC------ChHHHHHHHHHhcCe---E-
Q 013521 340 SPDGFQALRTVIDYYKENAKIIVDAFQSL----GLKVNGGK-NAPYVWVQFPGS------SSWDVFAEILEKTHI---L- 404 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~-~~~~~~~~~~~~------~~~~~~~~ll~~~gi---~- 404 (441)
.+.+.+.++++.++..++.+++.+.|+++ |-++...+ +..-+-+.+... ....+-..|..+ +| -
T Consensus 327 L~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r-~vsG~Rv 405 (501)
T 3hl2_A 327 LSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTR-QVSGARV 405 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHT-TCCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhc-CCCccee
Confidence 33445566788888888888888888875 55554322 344456666422 123445555554 44 2
Q ss_pred EeCCC----------CcCCCC----CCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 405 TIPGS----------GFGPGG----NEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 405 v~pg~----------~f~~~~----~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
|.+|. .|+... ..++-++. +.+++|++.++++|.+.
T Consensus 406 v~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~ 457 (501)
T 3hl2_A 406 VPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRC 457 (501)
T ss_dssp ECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44555 454321 35676664 45899999999999875
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.7e-11 Score=114.46 Aligned_cols=297 Identities=12% Similarity=0.029 Sum_probs=169.4
Q ss_pred CcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHHHHH-HHHHhcCC----CCEEEEeCCCchhhHhHHHHhcccccccccc
Q 013521 115 GNMALRTAIADKFYKDMGIEG-DEIFISDGAQSDIS-RLQMLLGS----NVTVAVQDPSFPAYIDTSVIVGQAGKFLKET 188 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~al~-~l~~l~~~----gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~ 188 (441)
+...+.+.+..|+.+.+|++. ...++++|+|.+.. +++..+++ ++.|+++..+|.++...+..+|
T Consensus 95 ~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~G--------- 165 (450)
T 3bc8_A 95 LLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAG--------- 165 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTT---------
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcC---------
Confidence 456677788888877556653 35689999985554 45555554 8999999999999999999999
Q ss_pred CccceeEEeecCCC-CCccCCCCC-------CC-CccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc
Q 013521 189 GKYRNIVYMNCRPE-NNFFPDLST-------TS-RTDIIFFCSP-NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA 258 (441)
Q Consensus 189 ~~~~~v~~v~~~~~-~~~~~~~~~-------~~-~~~~v~i~~p-~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~ 258 (441)
+.++.++...+ .....+++. .+ +.+++++.+| .|.+|.+-+ +++|+++|++||+++++|++|+-
T Consensus 166 ---l~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~ 239 (450)
T 3bc8_A 166 ---FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGL 239 (450)
T ss_dssp ---CEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTT
T ss_pred ---CeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCch
Confidence 46666654221 122333221 12 3456666677 455667767 99999999999999999999995
Q ss_pred cccCCC--CCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHH
Q 013521 259 YITDPS--PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGL 336 (441)
Q Consensus 259 ~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 336 (441)
...... +.+....... .+++.|.+|++. .....+++..++... .+.+... .....++.++.....
T Consensus 240 ~~~~~~~l~~~a~~~~~A---D~~v~S~HK~l~-a~~~~~~l~~rd~~~-------~~~~~~~--~~g~~s~SpsL~l~~ 306 (450)
T 3bc8_A 240 QSSKCMHLIQQGARVGRI---DAFVQSLDKNFM-VPVGGAIIAGFNEPF-------IQDISKM--YPGRASASPSLDVLI 306 (450)
T ss_dssp TCHHHHHHHHHHHHHSCC---CEEEEEHHHHHS-CCSSCEEEEESCHHH-------HHHHHHH--SCSCBCSHHHHHHHH
T ss_pred hhhhhHhHHHHHhcccCC---CEEEECCccCCC-chhccEEEEecCHHH-------HHHHHHH--hhcCCcccHHHHHHH
Confidence 322100 1111111112 378899999996 666677777654321 2222211 101112334444444
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCC-CceEEEEEcC------CCChHHHHHHHHHh--cCe
Q 013521 337 ACLSPDGFQALRTVIDYYKENAKIIVDAFQSL----GLKVNGGK-NAPYVWVQFP------GSSSWDVFAEILEK--THI 403 (441)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~-~~~~~~~~~~------~~~~~~~~~~ll~~--~gi 403 (441)
.++. .+.+.+++..++..+..+.+.+.|+++ |..+...+ .+.-..+.+. ..+...+...+... .|.
T Consensus 307 ~l~~-~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~ 385 (450)
T 3bc8_A 307 TLLS-LGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGA 385 (450)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSC
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccc
Confidence 4443 244445555555566666666666543 66654422 1111223232 11233444444332 233
Q ss_pred EEeC--------CCCc---C----CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 404 LTIP--------GSGF---G----PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 404 ~v~p--------g~~f---~----~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+.+ |..| + .....+|=+.+ +.+++++++++++|+++
T Consensus 386 ~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~ 439 (450)
T 3bc8_A 386 RAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKC 439 (450)
T ss_dssp EEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3331 1222 1 11234555443 55899999999999875
|
| >4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0002 Score=57.63 Aligned_cols=31 Identities=13% Similarity=-0.052 Sum_probs=27.8
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|+||.+||.+|+++|+ .++|+||||+..
T Consensus 49 gVSr~tVReAl~~L~~eGlv~~~~g~G~~V~~~ 81 (134)
T 4ham_A 49 GVNPNTVSKAYQELERQEVIITVKGKGTFIANQ 81 (134)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEcCcEEEEeCC
Confidence 3459999999999999999 999999999753
|
| >3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00084 Score=53.22 Aligned_cols=31 Identities=13% Similarity=-0.059 Sum_probs=27.6
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|+||.+||..|+++|+ .++|+|+||+..
T Consensus 46 ~vSr~tvr~Al~~L~~~G~i~~~~~~G~~V~~~ 78 (126)
T 3ic7_A 46 EVNANTVMRSYEYLQSQEVIYNKRGIGFFVASG 78 (126)
T ss_dssp -CCSGGGHHHHHHHHTTTSEEEETTTEEEECTT
T ss_pred CcCHHHHHHHHHHHHHCCcEEEEcCCccEEccC
Confidence 4569999999999999999 899999999753
|
| >3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.00099 Score=52.74 Aligned_cols=31 Identities=10% Similarity=-0.035 Sum_probs=27.8
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|+||.+||..|+++|+ .++|+|+||+..
T Consensus 48 ~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125)
T 3neu_A 48 AVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CcCHHHHHHHHHHHHHCCeEEEecCCEEEEecC
Confidence 4559999999999999999 899999999863
|
| >3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0014 Score=50.83 Aligned_cols=30 Identities=13% Similarity=-0.109 Sum_probs=27.2
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||.+||..|+++|+ .++|+|+||+.
T Consensus 44 ~vSr~tvr~al~~L~~~Gli~~~~~~G~~V~~ 75 (113)
T 3tqn_A 44 QINPLTVSKAYQSLLDDNVIEKRRGLGMLVKA 75 (113)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECT
T ss_pred CcCHHHHHHHHHHHHHCCCEEEecCCeEEEeC
Confidence 3459999999999999999 89999999975
|
| >3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0015 Score=51.74 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=27.3
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||.+||..|+.+|+ .++|+|+||+.
T Consensus 46 ~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 77 (126)
T 3by6_A 46 KINPNTVAKAYKELEAQKVIRTIPGKGTFITG 77 (126)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECS
T ss_pred CcCHHHHHHHHHHHHHCCCEEEecCCeEEEcc
Confidence 3459999999999999999 89999999975
|
| >2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.002 Score=51.27 Aligned_cols=30 Identities=13% Similarity=-0.078 Sum_probs=27.4
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||.+||..|+++|+ .++|+|+||+.
T Consensus 39 gvSr~tVr~Al~~L~~~Gli~~~~g~G~~V~~ 70 (129)
T 2ek5_A 39 RINPATARNGLTLLVEAGILYKKRGIGMFVSA 70 (129)
T ss_dssp TCCHHHHHHHHHHHHTTTSEEEETTTEEEECT
T ss_pred CcCHHHHHHHHHHHHHCCcEEEecCCEEEEec
Confidence 4559999999999999999 89999999975
|
| >3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0041 Score=55.13 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=27.9
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||.+|+++|+++|+ .++|+||||+..
T Consensus 44 ~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 76 (236)
T 3edp_A 44 SSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQPK 76 (236)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CcCHHHHHHHHHHHHHCCCEEEECCceEEEccC
Confidence 4559999999999999999 899999999753
|
| >3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.006 Score=55.32 Aligned_cols=31 Identities=6% Similarity=-0.092 Sum_probs=26.0
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||.+|+++|+++|+ .++|+||||+..
T Consensus 64 ~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 96 (272)
T 3eet_A 64 GVSDTVALEARKVLMAEGLVEGRSGSGTYVRER 96 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECCC--EEECCC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCceEEEecC
Confidence 3459999999999999999 999999999864
|
| >2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.0074 Score=53.73 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=27.7
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|+||.+|++.|+++|+ .++|+||||+..
T Consensus 45 ~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 77 (243)
T 2wv0_A 45 GISRMTVRQALSNLVNEGLLYRLKGRGTFVSKP 77 (243)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECTTSCEEECCC
T ss_pred CcCHHHHHHHHHHHHHCCcEEEeCCCeEEEeCC
Confidence 3459999999999999999 899999999753
|
| >3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.0067 Score=54.19 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=27.0
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||.+|+++|+++|+ . +|+||||+..
T Consensus 47 ~vSr~tvr~Al~~L~~~G~i~~-~g~Gt~V~~~ 78 (248)
T 3f8m_A 47 EVARETVRQALRELLIDGRVER-RGRTTVVARP 78 (248)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEE-ETTEEEECCC
T ss_pred CcCHHHHHHHHHHHHHCCCEEe-CCCEEEEccC
Confidence 4559999999999999999 7 9999999864
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.0071 Score=45.78 Aligned_cols=31 Identities=19% Similarity=0.056 Sum_probs=27.3
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++++||.+|+..|+++|+ .++|+|+||...
T Consensus 46 ~vSr~tvr~al~~L~~~Gli~~~~g~G~~v~~~ 78 (102)
T 1v4r_A 46 GVAAKTVSRALAVLKSEGLVSSRGALGTVVEKN 78 (102)
T ss_dssp SSCTTHHHHHTTTTTTSSCCEEETTTEEESCSC
T ss_pred CcCHHHHHHHHHHHHHCCCEEEeCCCeEEEccC
Confidence 3459999999999999999 888999999754
|
| >3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.0087 Score=53.12 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=27.8
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||-+|+.+|+++|+ .++|+||||+..
T Consensus 40 ~vSr~tvr~Al~~L~~~g~i~~~~g~G~~V~~~ 72 (239)
T 3bwg_A 40 EVSKSTITKSLELLEQKGAIFQVRGSGIFVRKH 72 (239)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEeCCceEEEecC
Confidence 4459999999999999999 899999999754
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.01 Score=44.92 Aligned_cols=30 Identities=7% Similarity=-0.082 Sum_probs=25.9
Q ss_pred CCcccchhhhHHhhhhCCC--CCc--cccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVP--RHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~--~~g~~v~~ 42 (441)
+++|+||.+|+..|+++|+ .++ ++|+||+.
T Consensus 54 gVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~ 87 (102)
T 2b0l_A 54 GITRSVIVNALRKLESAGVIESRSLGMKGTYIKV 87 (102)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEE
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEec
Confidence 3459999999999999999 667 69999974
|
| >1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.013 Score=51.95 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=27.6
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|+||-.|+..|+.+|+ .++|+||||+.
T Consensus 42 gVSR~tVReAL~~L~~eGlv~~~~g~G~~V~~ 73 (239)
T 1hw1_A 42 GVTRTTLREVLQRLARDGWLTIQHGKPTKVNN 73 (239)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTEEEEECC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEecCCCcEeeC
Confidence 4569999999999999999 89999999975
|
| >2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.0088 Score=53.36 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=4.7
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|+||.+|++.|+++|+ .++|+||||+..
T Consensus 51 ~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 83 (247)
T 2ra5_A 51 GLSRPTVRQAIQSLVDKGLLVRRRGVGTQVVHS 83 (247)
T ss_dssp -----------------CEEEEEC---------
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEcCceeEEecc
Confidence 4559999999999999999 899999999753
|
| >2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84 | Back alignment and structure |
|---|
Probab=92.90 E-value=0.027 Score=45.64 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=26.1
Q ss_pred CcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
++|+||-+||++|+++|| ..+++|+||+.
T Consensus 93 vSr~tVR~AL~~Le~~GlV~~~~~~G~~Vt~ 123 (150)
T 2v7f_A 93 AGGSIIRKALQQLEAAGFVEKVPGKGRVITP 123 (150)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEETTTEEEECH
T ss_pred cchHHHHHHHHHHHHCCCEEEeCCCceEECC
Confidence 559999999999999999 66899999975
|
| >3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.055 Score=47.24 Aligned_cols=30 Identities=7% Similarity=-0.037 Sum_probs=27.5
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|+||-.|+..|+.+|+ .++|+|+||+.
T Consensus 50 gVSRtpVREAl~~L~~eGlv~~~~~~G~~V~~ 81 (222)
T 3ihu_A 50 GVGRNSVREALQRLAAEGIVDLQRHRGAVIRR 81 (222)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECSTTCEEECC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCCeEEec
Confidence 4569999999999999999 89999999975
|
| >3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=0.048 Score=47.48 Aligned_cols=30 Identities=17% Similarity=-0.046 Sum_probs=27.5
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|+||-.|+..|+.+|+ .++|+|+||+.
T Consensus 46 gVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~ 77 (218)
T 3sxy_A 46 GISFTPVRDALLQLATEGLVKVVPRVGFFVTD 77 (218)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEETTTEEEECC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCCCceEEcC
Confidence 4559999999999999999 89999999975
|
| >2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1 | Back alignment and structure |
|---|
Probab=90.63 E-value=0.067 Score=47.29 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=27.5
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||-.|+..|+.+|+ .++++|+||+.
T Consensus 62 gVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~ 93 (239)
T 2hs5_A 62 DVSRNTVREAFQILIEDRLVAHELNRGVFVRV 93 (239)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCCCeeEEeC
Confidence 4559999999999999999 89999999975
|
| >2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=89.91 E-value=0.09 Score=46.42 Aligned_cols=30 Identities=3% Similarity=-0.086 Sum_probs=27.4
Q ss_pred CCcccchhhhHHhhhhCCC--C--Ccc--ccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--P--VPR--HCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~--~~~--~g~~v~~ 42 (441)
|++|+||-.|+..|+.+|+ . ++| +|+||+.
T Consensus 39 gVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~ 74 (239)
T 2di3_A 39 GVSRSSLREALRVLEALGTISTATGSGPRSGTIITA 74 (239)
T ss_dssp TCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECC
T ss_pred CCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeC
Confidence 4569999999999999999 7 889 9999985
|
| >3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=89.32 E-value=0.1 Score=46.10 Aligned_cols=30 Identities=7% Similarity=-0.067 Sum_probs=27.0
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||-.|+..|+.+|+ .++|+|++|+.
T Consensus 60 gVSr~~VReAL~~L~~~Glv~~~~~~G~~V~~ 91 (237)
T 3c7j_A 60 GVSRMPVREALRQLEAQSLLRVETHKGAVVAP 91 (237)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCCCceEEec
Confidence 4559999999999999999 88899999975
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=81.32 E-value=0.38 Score=36.50 Aligned_cols=29 Identities=3% Similarity=-0.136 Sum_probs=23.0
Q ss_pred CCcccchhhhHHhhhhCCC--CC----cccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PV----PRHCTEVS 41 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~----~~~g~~v~ 41 (441)
+.+++||.+++..|+++|+ .. ++.|++|.
T Consensus 44 gvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~ 78 (110)
T 1q1h_A 44 NIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIY 78 (110)
T ss_dssp TSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEE
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEE
Confidence 4559999999999999999 44 67888775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 441 | ||||
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 2e-56 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-56 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 1e-54 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 3e-39 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 5e-37 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 2e-35 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 1e-30 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-30 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 2e-30 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-29 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 2e-29 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 1e-27 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 4e-27 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 5e-26 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 9e-25 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-24 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 4e-24 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 4e-24 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 5e-24 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 7e-23 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 7e-22 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 8e-22 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 3e-20 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 2e-19 | |
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 4e-10 | |
| d1svva_ | 340 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 4e-06 | |
| d2f8ja1 | 334 | c.67.1.1 (A:1-334) Histidinol-phosphate aminotrans | 1e-05 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 0.002 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 189 bits (480), Expect = 2e-56
Identities = 86/402 (21%), Positives = 154/402 (38%), Gaps = 43/402 (10%)
Query: 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA 112
+ I + + D + G+ P I A +G YG
Sbjct: 13 SMTLIIDAKAKAMKAEGID--VCSFSAGEPDFNTPKHIVEAAKAAL-----EQGKTRYGP 65
Query: 113 EQGNMALRTAIADKFYKDMGIEGD--EIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFP 169
G LR AIA K +D G+ I +++G + I L ++ V + P +
Sbjct: 66 AAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWV 125
Query: 170 AYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-----STTSRTDIIFFCSPN 224
+Y + + V + E F + T +T ++ F +P+
Sbjct: 126 SYPEMVKLA------------EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPS 173
Query: 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-PSPRSIYEI-PGAREVAIEIS 282
NPTG T +++ + + A G ++ D Y + D SI P A E ++ S
Sbjct: 174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCS 233
Query: 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD 342
F+K TG R+G+ P L +K +I + Q G +
Sbjct: 234 GFAKTYAMTGWRVGFLAGPVPL--------VKAATKIQGHSTSNVCTFAQYGA-IAAYEN 284
Query: 343 GFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFP--GSSSWDVFAEILE 399
++ ++ + E + ++DA ++ GL+ A Y++ G SS D +E+L+
Sbjct: 285 SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLD 344
Query: 400 KTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+ + T+PG+ F G ++ IR+S + I RL+ FL
Sbjct: 345 QHQVATVPGAAF--GADDCIRLSYATDLDTIKRGMERLEKFL 384
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 188 bits (478), Expect = 3e-56
Identities = 98/402 (24%), Positives = 155/402 (38%), Gaps = 46/402 (11%)
Query: 59 SMRESEHIRK-------HPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG 111
+ SE IRK D +I LGIG+ P I E KG YG
Sbjct: 8 LVSASE-IRKLFDIAAGMKD--VISLGIGEPDFDTPQHIKEYAKEAL-----DKGLTHYG 59
Query: 112 AEQGNMALRTAIADKFYKDMGI---EGDEIFISDGAQSDISRLQM-LLGSNVTVAVQDPS 167
G + LR AIA+K K GI EI + GA L V + P+
Sbjct: 60 PNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPA 119
Query: 168 FPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-----STTSRTDIIFFCS 222
F +Y ++ G V + E+ F ++ T +T + S
Sbjct: 120 FVSYAPAVILAG------------GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINS 167
Query: 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR-SIYEIPGAREVAIEI 281
P NPTG T + L+++ +F + I++ D Y +I D + SI + G E I +
Sbjct: 168 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITV 227
Query: 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP 341
+ FSK TG RLG+ P + + + V A+ A
Sbjct: 228 NGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAK-------ALKDE 280
Query: 342 DGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP--GSSSWDVFAEILE 399
++A+ + Y K++ +GL K A Y++ + G +S +L+
Sbjct: 281 RSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLK 340
Query: 400 KTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+ + +PGS FG G ++R+S E + EA R++ L
Sbjct: 341 EARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVL 382
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 184 bits (468), Expect = 1e-54
Identities = 83/400 (20%), Positives = 144/400 (36%), Gaps = 42/400 (10%)
Query: 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA 112
++ + E R+ D L+ L G+ P+ + A +G Y
Sbjct: 14 SATVAVNAKALELRRQGVD--LVALTAGEPDFDTPEHVKEAARRAL-----AQGKTKYAP 66
Query: 113 EQGNMALRTAIADKFYKD--MGIEGDEIFISDGAQSDIS-RLQMLLGSNVTVAVQDPSFP 169
G LR A+A+KF ++ + + +E ++ G + Q +L V V P +
Sbjct: 67 PAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWV 126
Query: 170 AYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-----STTSRTDIIFFCSPN 224
+Y + +V + PE F PD + T RT + SPN
Sbjct: 127 SYPEMVRFA------------GGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPN 174
Query: 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSF 284
NPTG + L+ L A + +V D Y + + S + A E + ++
Sbjct: 175 NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV--APEHTLTVNGA 232
Query: 285 SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI--VCTCFNGASNIVQAGGLACLSPD 342
+K TG R+G+ P+E+ IK + T
Sbjct: 233 AKAFAMTGWRIGYACGPKEV--------IKAMASVSRQSTTSPDTIAQWATLEALTNQEA 284
Query: 343 GFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQF-PGSSSWDVFAEILEKT 401
+ + Y+ ++++ +LGLK A YV + P + AE L +
Sbjct: 285 SRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEA 344
Query: 402 HILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+ +PG+ F G H+R+S E + +A R L
Sbjct: 345 GVAVVPGTDFAAFG--HVRLSYATSEENLRKALERFARVL 382
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 143 bits (361), Expect = 3e-39
Identities = 75/379 (19%), Positives = 137/379 (36%), Gaps = 27/379 (7%)
Query: 73 RLIRLGIGDTTQ---PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK 129
++IRL IGD + P+ + A + +G+ YG +G LR AI ++ +
Sbjct: 31 KVIRLNIGDPVKFDFQPPEHMKEAYCKAI-----KEGHNYYGDSEGLPELRKAIVEREKR 85
Query: 130 DMGIEGD---EIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK 186
G++ + ++ LL + V PS+P Y G +
Sbjct: 86 KNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYR 145
Query: 187 ETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKAN 246
+ ++ + T RT I +PNNPTG + L++++ A
Sbjct: 146 TIEEEDWQPDIDDIRKK-------ITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY 198
Query: 247 GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306
++ D Y + S + V I ++ SK TG RLG+ +
Sbjct: 199 EIPVISDEIYDLMTYEGEHISPGSLTKDVPV-IVMNGLSKVYFATGWRLGYMYFVD---P 254
Query: 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366
N +++ + + Q +A L+ L+ + KE I
Sbjct: 255 ENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLN 313
Query: 367 SLG-LKVNGGKNAPYVWVQFP---GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS 422
+ + + A Y++ + + + ++L H+L + GSGFG G H R
Sbjct: 314 EIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV 373
Query: 423 AFGHREYISEACRRLKNFL 441
E + EA R + F+
Sbjct: 374 FLPPIEILEEAMDRFEKFM 392
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 137 bits (344), Expect = 5e-37
Identities = 79/392 (20%), Positives = 138/392 (35%), Gaps = 32/392 (8%)
Query: 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA 112
E+ + I+K D +I L G+ P P+ + KG Y
Sbjct: 11 SKTMELDAKAKALIKKGED--VINLTAGEPDFPTPEPVVEEAVRFL-----QKGEVKYTD 63
Query: 113 EQGNMALRTAIAD---KFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFP 169
+G LR IA + YK + + Q+ + LL V V P +
Sbjct: 64 PRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWV 123
Query: 170 AYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGH 229
+YI T + + +T + SPNNPTG
Sbjct: 124 SYIP-------QIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGV 176
Query: 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG 289
+ L+ LV AK I+ D Y + + SI ++ + + I+ FSK
Sbjct: 177 VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHS 236
Query: 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRT 349
TG R+G+ + E++ + + I
Sbjct: 237 MTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQY------------AALKALEVDNSY 284
Query: 350 VIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGS 409
++ +KE +V+ + +G+K + A Y++ + G +LE+ + +PGS
Sbjct: 285 MVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRG-DDVKFCERLLEEKKVALVPGS 343
Query: 410 GFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
F G +R+S E ++EA R+++FL
Sbjct: 344 AFLKPG--FVRLSFATSIERLTEALDRIEDFL 373
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 133 bits (335), Expect = 2e-35
Identities = 55/355 (15%), Positives = 91/355 (25%), Gaps = 69/355 (19%)
Query: 119 LRTAIADKFYKDMGIEGDEIFISDGAQSD--ISRLQMLLGSNVTVAVQDPSFPAYIDTSV 176
L I + + +I G I L + L N+T P
Sbjct: 105 LEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPF 164
Query: 177 IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAA 231
+R + + + + I SPNNP G
Sbjct: 165 YPV-----------FREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEG--- 210
Query: 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291
L+ V G +YD Y I + I + + SKF G +
Sbjct: 211 ---LLRHAVI----KGCKSIYDMVYYWP-------HYTPIKYKADEDILLFTMSKFTGHS 256
Query: 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA----- 346
G R GW ++ +E V + + G Q L L
Sbjct: 257 GSRFGWALIKDE-------SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKG 309
Query: 347 -----LRTVIDYYKENAKIIVDAFQSLG---------------LKVNGGKNAPYVWVQFP 386
+E I + + Y WV+
Sbjct: 310 TMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCE 369
Query: 387 GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
D + + + I T G GF ++R+S ++ + LK+ +
Sbjct: 370 WEEDKDCY-QTFQNGRINTQNGVGFEASSR-YVRLSLIKTQDDFDQLMYYLKDMV 422
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 119 bits (297), Expect = 1e-30
Identities = 71/398 (17%), Positives = 133/398 (33%), Gaps = 38/398 (9%)
Query: 46 MESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK 105
E+ + +FP +S + LG G + P P + A+
Sbjct: 7 TEAAKE-SIFPRMSGLAQRL-------GAVNLGQGFPSNPPPPFLLEAVRRAL------G 52
Query: 106 GYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQD 165
Y G ALR A+A++F + + S ++ LQ L+G V V +
Sbjct: 53 RQDQYAPPAGLPALREALAEEFAVEPE---SVVVTSGATEALYVLLQSLVGPGDEVVVLE 109
Query: 166 PSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNN 225
P F Y+ + + G + ++ E P RT + +P N
Sbjct: 110 PFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMN 163
Query: 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285
PTG ++L+ + A+A+ + + + E + S
Sbjct: 164 PTGLVFGERELEAIARLARAHD-LFLISDEVYDELYYGERPRRLREFA-PERTFTVGSAG 221
Query: 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345
K TG R+GW + + T F+ + + A
Sbjct: 222 KRLEATGYRVGW-------IVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREG 274
Query: 346 ALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILT 405
+ + Y+ ++ +++GL+V + ++ + PG WD F ++E+ +
Sbjct: 275 FYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPG---WDAF-RLVEEARVAL 330
Query: 406 IPGSGFGPG--GNEHIRVSAFGHREYISEACRRLKNFL 441
IP S F + R + E + A RL +
Sbjct: 331 IPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 120 bits (300), Expect = 1e-30
Identities = 62/407 (15%), Positives = 124/407 (30%), Gaps = 39/407 (9%)
Query: 65 HIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFAL-------STVKGYKGYGAEQGNM 117
H + + +I++G+ + Q D++ S +A++ A S + G
Sbjct: 30 HEVHNTNG-IIQMGLAEN-QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLP 87
Query: 118 ALRTAIADKFYKDMG----IEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYI 172
A + A+ D + G + + + ++ GA S L V + P +P +
Sbjct: 88 AFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFD 147
Query: 173 DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPT-GHAA 231
E + R + +P+NP
Sbjct: 148 RDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMT 207
Query: 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAR---------EVAIEIS 282
+ L +I + + PS S+ E+ R + +
Sbjct: 208 RNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVY 267
Query: 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD 342
S SK G G R+G +++ + + T ++ + +
Sbjct: 268 SLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAE 327
Query: 343 GFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG-------SSSWDVFA 395
+ K+ K +V Q G+ G + WV + +++
Sbjct: 328 NHK-------RLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWK 380
Query: 396 EILEKTHILTIPGSGFGPGGNEHIRVS-AFGHREYISEACRRLKNFL 441
+I+ + H+ PGS RV A + A +RLK F+
Sbjct: 381 KIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFV 427
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 119 bits (299), Expect = 2e-30
Identities = 70/395 (17%), Positives = 132/395 (33%), Gaps = 36/395 (9%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE 134
+ LG G P PD A A+S Y G L +A F + +G E
Sbjct: 28 VNLGQGFPDFPPPDFAVEAFQH---AVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQE 84
Query: 135 GDE---IFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGK 190
D + ++ G + Q L+ V + +P F Y +++ G G+ + + K
Sbjct: 85 IDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAG--GRPVFVSLK 142
Query: 191 YRNIVYMNCRPENNFFPDLS-----TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA 245
I +N+ D TSRT + +PNNP G + ++L+ + +
Sbjct: 143 PGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQ 202
Query: 246 NGSIIVYDSAYAAYITD-PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304
+ + + D Y + D SI +PG E + I S K TG ++GW + P+ +
Sbjct: 203 HDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHI 262
Query: 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDA 364
+ + L P + + ++ +
Sbjct: 263 MKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYF--VQFPQAMQRCRDHMIRS 320
Query: 365 FQSLGLKVNGGKNAPYVWVQFPG--------------SSSWDVFAEILEKTHILTIPGSG 410
QS+GLK + + ++ +++ ++ IP S
Sbjct: 321 LQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSI 380
Query: 411 FG-----PGGNEHIRVSAFGHREYISEACRRLKNF 440
F + +IR + +L+ +
Sbjct: 381 FYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKW 415
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 117 bits (294), Expect = 1e-29
Identities = 65/403 (16%), Positives = 121/403 (30%), Gaps = 38/403 (9%)
Query: 69 HPDAR---LIRLGIGDTTQPIPDIITSAMAEHAFA------LSTVKGYKGYGAEQGNMAL 119
HP +I++G+ + Q D+I + + + + K + G
Sbjct: 30 HPLKNPNGVIQMGLAEN-QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEF 88
Query: 120 RTAIADKFYKDMG----IEGDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPSFPAYIDT 174
R AIA K G + + + ++ GA + L V P +PA+
Sbjct: 89 RKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRD 148
Query: 175 SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQ 234
N + + + + + + +P+NP G
Sbjct: 149 LRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKD 208
Query: 235 QLKKLVEFAKANG-SIIVYDSAYAAYITDPSPRSIYEIPGAREVA-------IEISSFSK 286
LK ++ F + ++ + A P SI EI +E+ + S SK
Sbjct: 209 TLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSK 268
Query: 287 FAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA 346
G G R+G YS V+ ++ +
Sbjct: 269 DMGLPGFRVGI-------IYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNF 321
Query: 347 LRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG-------SSSWDVFAEILE 399
LR + K + + +G+K + W+ S ++ I+
Sbjct: 322 LRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIIN 381
Query: 400 KTHILTIPGSGFGPGGNEHIRVS-AFGHREYISEACRRLKNFL 441
+ PGS F RV A + A R++ F+
Sbjct: 382 DVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFV 424
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 116 bits (291), Expect = 2e-29
Identities = 74/397 (18%), Positives = 125/397 (31%), Gaps = 27/397 (6%)
Query: 59 SMRESEHIRK------HPDARLIRLGIG--DTTQPIPDIITSAMAEHAFALSTVKGYKGY 110
M+ SE +R+ D I L G + I E + Y
Sbjct: 13 LMKASE-VRELLKLVETSDV--ISLAGGLPAPETFPVETIKKIAVEVLEEHAD--KALQY 67
Query: 111 GAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISRL-QMLLGSNVTVAVQDPS 167
G +G LR A+A K I EI G+Q + + ++ L + V+ P+
Sbjct: 68 GTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPT 127
Query: 168 FPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPT 227
+ A I + K + + + E + + NP
Sbjct: 128 YLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQG---KRVKIVYTVSTFQNPA 184
Query: 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKF 287
G + + KKL+E A +IV D Y+ P + I + +FSK
Sbjct: 185 GVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKI 244
Query: 288 AGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQAL 347
G R+GW L A V+ G L P +
Sbjct: 245 -LAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFY 303
Query: 348 RTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP 407
+ D E ++ + G++ + +V V P + E + +P
Sbjct: 304 KPRRDAMLE----ALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVP 359
Query: 408 GSGFGPGGNE--HIRVS-AFGHREYISEACRRLKNFL 441
G F ++ +R++ + E I E RRL +
Sbjct: 360 GEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETI 396
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 111 bits (278), Expect = 1e-27
Identities = 59/406 (14%), Positives = 108/406 (26%), Gaps = 52/406 (12%)
Query: 67 RKHPDARLIRLGIG---DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAI 123
R+ PD R + LG+G + E A + Y G RT
Sbjct: 25 REDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIA-NNSSLNHEYLPILGLAEFRTCA 83
Query: 124 ADKFYKDMG------------IEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAY 171
+ D G + GA+ + V V P++ +
Sbjct: 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENH 143
Query: 172 IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL--------STTSRTDIIFFCSP 223
G +++I DL + + +
Sbjct: 144 NGVFTTAG-----------FKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACA 192
Query: 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD---PSPRSIYEIPGAREVAIE 280
+NPTG T +Q K++ K +DSAY + + +I
Sbjct: 193 HNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFC 252
Query: 281 ISSFSKFAGFTGVRLGWTVVP----EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGL 336
SFSK G R+G V + + GA + +
Sbjct: 253 AQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSD 312
Query: 337 ACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAP----YVWVQFPGSSSWD 392
L + ++T+ D + ++L + + G +
Sbjct: 313 PELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFT---GLNP-K 368
Query: 393 VFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLK 438
++ + HI +P G + I EA +++
Sbjct: 369 QVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATS--IHEAVTKIQ 412
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 109 bits (273), Expect = 4e-27
Identities = 57/413 (13%), Positives = 128/413 (30%), Gaps = 21/413 (5%)
Query: 43 NVNMESLQSGYLFPEISMRESEHIRKHPDAR-LIRLGIGDTTQPIPDIITSAMAEHAFAL 101
+V+M + +G +F I S++ + P + +I+L +GD T + ++A +
Sbjct: 2 DVSMSNH-AGLVFNPIR-TVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEA 59
Query: 102 STVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTV 161
+ GY G+ R A+A + + + +
Sbjct: 60 IDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAIT 119
Query: 162 AVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-STTSRTDIIFF 220
A+ D A + ++ +
Sbjct: 120 AICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLI 179
Query: 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-----PSPRSIYEIPGAR 275
+ + + ++ + + + ++ A + + +
Sbjct: 180 VTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETT 239
Query: 276 EVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGG 335
+ + +K G RLGW + + P + + V G +VQA
Sbjct: 240 VPRVILGGTAKNLVVPGWRLGWLLYVDPHGN---GPSFLEGLKRVGMLVCGPCTVVQAAL 296
Query: 336 LACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGS------ 388
L + L ++ +E+A + + GL + A Y+ +
Sbjct: 297 GEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIK 356
Query: 389 SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441
+ + F ++LE+ ++ +PG+ F G R++ E EA R+K F
Sbjct: 357 TDVEFFEKLLEEENVQVLPGTIFHAPG--FTRLTTTRPVEVYREAVERIKAFC 407
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 107 bits (266), Expect = 5e-26
Identities = 62/391 (15%), Positives = 124/391 (31%), Gaps = 28/391 (7%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE 134
+ LG G P +A+A A + Y G+ L A++ + + +
Sbjct: 29 LNLGQGFPDYHAPKYALNALAAAANSPD--PLANQYTRGFGHPRLVQALSKLYSQLVDRT 86
Query: 135 GD---EIFISDGA-QSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETG 189
+ E+ ++ GA ++ + +Q + V + +P F Y G +F+ +
Sbjct: 87 INPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPN 146
Query: 190 KYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSI 249
K + +N + +T +I +P+NP G +L+ + K +
Sbjct: 147 KTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVL 206
Query: 250 IVYDSAYAAYITDPSPRS-IYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN 308
V D Y + +P I +PG E I I S K TG ++GW PE
Sbjct: 207 CVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE--ALLK 264
Query: 309 GYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368
++ C + V ++ + +
Sbjct: 265 NLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV 324
Query: 369 GLKVNGGKNAPYVWVQFPG-------------SSSWDVFAEILEKTHILTIPGSGFGPGG 415
G+ + ++ + + + + + IP S F
Sbjct: 325 GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP 384
Query: 416 NE-----HIRVSAFGHREYISEACRRLKNFL 441
N+ +R F E + +A L+ +
Sbjct: 385 NKHLGEDFVRYCFFKKDENLQKAAEILRKWK 415
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 103 bits (256), Expect = 9e-25
Identities = 57/400 (14%), Positives = 109/400 (27%), Gaps = 38/400 (9%)
Query: 67 RKHPDARLIRLGIG---DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAI 123
+ A + LGIG D + + AE + Y G +L +
Sbjct: 24 GQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-SYNHEYLGITGLPSLTSNA 82
Query: 124 ADKFYKDMGIEGDE----IFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVG 179
A + E S + + S P + + I
Sbjct: 83 AKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFE 142
Query: 180 QAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKL 239
G + N + + +NPTG T +Q ++
Sbjct: 143 NQGLKTATYPYWANETKSLDLNGFLNAIQ-KAPEGSIFVLHSCAHNPTGLDPTSEQWVQI 201
Query: 240 VEFAKANGSIIVYDSAYAAYITDP------SPRSIYEIPGAREVAIEISSFSKFAGFTGV 293
V+ + I ++D+AY + T + R E SF+K AG G
Sbjct: 202 VDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE 261
Query: 294 RLGWTVVPEEL----RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA--- 346
R+G + + + I N + + +P+ +
Sbjct: 262 RVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHK 321
Query: 347 -LRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAP----YVWVQFPGSSSWDVFAEILEKT 401
+ T+ + + D LG N + + G + V + E
Sbjct: 322 DMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFT---GLTPQMV-KRLEETH 377
Query: 402 HILTIPGSGFGPGGNEHIRVSAFGHREYISEACRR-LKNF 440
+ + G V EY+++A ++ +
Sbjct: 378 AVYLVASGRASIAGLNQGNV------EYVAKAIDEVVRFY 411
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 101 bits (253), Expect = 3e-24
Identities = 58/394 (14%), Positives = 109/394 (27%), Gaps = 49/394 (12%)
Query: 67 RKHPDARLIRLGIG-----DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRT 121
++ P + + L IG D P + A A + G Y +G R
Sbjct: 21 KEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEAR---LNAQPHGASLYLPMEGLNCYRH 77
Query: 122 AIADKFYKDMG--IEGDEIFISDGAQSDISRLQMLLG-----SNVTVAVQDPSFPAYIDT 174
AIA + ++ + + V V DP++ ++
Sbjct: 78 AIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAI 137
Query: 175 SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL--------STTSRTDIIFFCSPNNP 226
G + E + +R+ ++ +NP
Sbjct: 138 FAGAG------------FEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNP 185
Query: 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR--SIYEIPGAREVAIEISSF 284
TG T Q ++E KA I D AY + +I I A A+ +SF
Sbjct: 186 TGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSF 245
Query: 285 SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF 344
SK G R+G V E + G + + + + + Q
Sbjct: 246 SKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALK 305
Query: 345 QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSW-----DVFAEILE 399
+ ++ + + L + + G S+ + E
Sbjct: 306 ASWLAEVEEMRTRILAMRQELVK-VLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLRE 364
Query: 400 KTHILTIPGSGFGPGGNEHIRVSAFGHREYISEA 433
+ + I G V + +++A
Sbjct: 365 EFGVYLIASGRMCVAGLNTANV------QRVAKA 392
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 101 bits (251), Expect = 4e-24
Identities = 56/393 (14%), Positives = 107/393 (27%), Gaps = 40/393 (10%)
Query: 63 SEHIRKHPDARLIRLGIG-----DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNM 117
++ R I LGIG P+ + A L + K Y G
Sbjct: 17 ADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQY----LLENETTKNYLGIDGIP 72
Query: 118 ALRTAIADKFYKDMGIEGDE-------IFISDGAQSDISRLQMLLGSNVTVAVQDPSFPA 170
+ + ++ GA + S V V +PS+P
Sbjct: 73 EFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPN 132
Query: 171 YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHA 230
+ G Y + + + ++F +NPTG
Sbjct: 133 HKSVFNSAG----LEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGID 188
Query: 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITD--PSPRSIYEIPGAREVAIEISSFSKFA 288
T +Q + L + + G + ++D AY + + + I SS+SK
Sbjct: 189 PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNF 248
Query: 289 GFTGVRLGWTVVP----EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF 344
G R+G + E + + +GAS + L
Sbjct: 249 GLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWE 308
Query: 345 QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAP----YVWVQFPGSSSWDVFAEILEK 400
Q L + + ++ V+ Q G + + + + + E+
Sbjct: 309 QELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK----EQVLRLREE 364
Query: 401 THILTIPGSGFGPGGNEHIRVSAFGHREYISEA 433
+ + G + + EA
Sbjct: 365 FGVYAVASGRVNVAGMTPDNM------APLCEA 391
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (250), Expect = 4e-24
Identities = 63/380 (16%), Positives = 122/380 (32%), Gaps = 35/380 (9%)
Query: 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG 132
R+ L IG P++ + E+ Y G LR A A + +
Sbjct: 29 RIHHLNIGQPDLKTPEVFFERIYENK------PEVVYYSHSAGIWELREAFASYYKRRQR 82
Query: 133 IEGDEIFI---SDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189
++ + + G+++ + ++ + V +P + Y + I G
Sbjct: 83 VDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGV--------K 134
Query: 190 KYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSI 249
M + RT I +P NPTG +++ LVE A+ +G
Sbjct: 135 LIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLF 194
Query: 250 IVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309
++ D Y+ + S I + + I S SK G R+G + E S+
Sbjct: 195 LIVDEVYSEIVFRGEFASALSIE--SDKVVVIDSVSKKFSACGARVGCLITRNEELISHA 252
Query: 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG 369
+ + G+ L+ D Y + ++ +
Sbjct: 253 MKLAQGRLAPPLLEQIGSVG--------LLNLDDSFFDFVRETYRERVETVLKKLEEHGL 304
Query: 370 LKVNGGKNAPYVWVQFPGSSSWDVFAEIL-----EKTHILTIPGSGFGPG---GNEHIRV 421
+ A Y+ + P + + +L + + P GF G + IR+
Sbjct: 305 KRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRI 364
Query: 422 SAFGHREYISEACRRLKNFL 441
+ ++ +S A L L
Sbjct: 365 ACVLEKDLLSRAIDVLMEGL 384
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 100 bits (249), Expect = 5e-24
Identities = 65/392 (16%), Positives = 124/392 (31%), Gaps = 31/392 (7%)
Query: 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA 112
+F ++S +H + I L G P + +A H +G Y
Sbjct: 14 TIFTQMSALAQQH-------QAINLSQGFPDFDGPRYLQERLAHHV-----AQGANQYAP 61
Query: 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYI 172
G ALR AIA K + G + D + + + + +
Sbjct: 62 MTGVQALREAIAQKTERLYGYQPDADSDIT-VTAGATEALYAAITALVRNGDEVICFDPS 120
Query: 173 DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAAT 232
S A + + + RT ++ +P+NP+
Sbjct: 121 YDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALL---SERTRLVILNTPHNPSATVWQ 177
Query: 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS-IYEIPGAREVAIEISSFSKFAGFT 291
L + + ++ D Y + + P RE A+ +SSF K T
Sbjct: 178 QADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMT 237
Query: 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVI 351
G ++G+ I R V + N LA + + +
Sbjct: 238 GWKVGYC---------VAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALP 288
Query: 352 DYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP---GSSSWDVFAEILEKTHILTIPG 408
D+Y++ I+V+A L++ + ++ V + + + ++ + IP
Sbjct: 289 DFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPL 348
Query: 409 SGFG--PGGNEHIRVSAFGHREYISEACRRLK 438
S F P ++ IR+ + A RL+
Sbjct: 349 SVFCADPFPHKLIRLCFAKKESTLLAAAERLR 380
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 97.8 bits (242), Expect = 7e-23
Identities = 57/386 (14%), Positives = 107/386 (27%), Gaps = 37/386 (9%)
Query: 67 RKHPDARLIRLGIG-----DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRT 121
R P I LG+G PI + +A + + K Y G +
Sbjct: 21 RADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQR----MLETETTKTYAGLSGEPEFQK 76
Query: 122 AIADKFYKDMGIEGDEIFISDGAQSDISRL----QMLLGSNVTVAVQDPSFPAYIDTSVI 177
A+ + D ++ + R + ++ V V DP++P ++
Sbjct: 77 AMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNF 136
Query: 178 VGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLK 237
+G + + V + ++ +NPTG T Q
Sbjct: 137 MGLPVQTYRYFDAETRGVDFEGMKADLAA----AKKGDMVLLHGCCHNPTGANLTLDQWA 192
Query: 238 KLVEFAKANGSIIVYDSAYA--AYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295
++ + G++ + D AY + I + +S SK G R
Sbjct: 193 EIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERT 252
Query: 296 ----GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVI 351
+ G + F+GA + L D L V
Sbjct: 253 GCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVR 312
Query: 352 DYYKENAKIIVDAFQSLGLKVNGGKNAP----YVWVQFPGSSSWDVFAEILEKTHILTIP 407
+ + + L G A + + G++ V I E+ I +
Sbjct: 313 SGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRL---GATPEQV-KRIKEEFGIYMVG 368
Query: 408 GSGFGPGGNEHIRVSAFGHREYISEA 433
S G + ++ A
Sbjct: 369 DSRINIAGLNDNTI------PILARA 388
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 94.5 bits (233), Expect = 7e-22
Identities = 41/370 (11%), Positives = 96/370 (25%), Gaps = 14/370 (3%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI 133
++ L + D P + + ++ + GY + +
Sbjct: 33 VVPLSVADMEFKNPPELIEGLKKYL-----DETVLGYTG--PTEEYKKTVKKWMKDRHQW 85
Query: 134 EGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN 193
+ +I + + T + + + K
Sbjct: 86 DIQTDWII--NTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELL 143
Query: 194 IVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYD 253
+ LS + FCSP+NP G +L+K+ + + ++ D
Sbjct: 144 EKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSD 203
Query: 254 SAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVI 313
+ I ++++ + I+ + F + + +
Sbjct: 204 EIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIA---GMGMSNIIIKNPDIRER 260
Query: 314 KDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN 373
+R + + +A + + + + +K
Sbjct: 261 FTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320
Query: 374 GGKNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYIS 431
+ W+ F + ++ K I G FG GG R++ I
Sbjct: 321 LIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQ 380
Query: 432 EACRRLKNFL 441
E+ RL L
Sbjct: 381 ESLERLNKAL 390
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 94.7 bits (234), Expect = 8e-22
Identities = 56/403 (13%), Positives = 108/403 (26%), Gaps = 58/403 (14%)
Query: 63 SEHIRKHPDARLIRLGIG-----DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNM 117
+E ++ +++ + LG+G + + + + A A ++ K K Y G
Sbjct: 19 TEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAM----IAAKKMDKEYLPIAGLA 74
Query: 118 ALRTAIADKFYKDMG--IEGDEIFISDGAQSDI------SRLQMLLGSNVTVAVQDPSFP 169
A A+ + + G + LQ + V + PS+
Sbjct: 75 DFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWG 134
Query: 170 AYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL--------STTSRTDIIFFC 221
+ G + D ++ I+
Sbjct: 135 NHTPIFRDAG------------LQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHA 182
Query: 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY---EIPGAREVA 278
+NPTG +Q K+L K + +D AY + + R +
Sbjct: 183 CAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDV 242
Query: 279 IEISSFSKFAGFTGVRLGWTVVP----EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAG 334
+ S++K G G R G V EE + I NGA
Sbjct: 243 VLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLIL 302
Query: 335 GLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAP----YVWVQFPGSSS 390
L + ++ + D +V + G N + +
Sbjct: 303 NTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL----K 358
Query: 391 WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEA 433
+ + ++ I G V Y++ A
Sbjct: 359 PEQVERLTKEFSIYMTKDGRISVAGVASSNV------GYLAHA 395
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 89.5 bits (220), Expect = 3e-20
Identities = 45/372 (12%), Positives = 92/372 (24%), Gaps = 19/372 (5%)
Query: 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG- 132
L+ I D I A+ + + G GY + AIA F
Sbjct: 1 LLPFTISDMDFATAPCIIEALNQRL-----MHGVFGYSRWKN-DEFLAAIAHWFSTQHYT 54
Query: 133 -IEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191
I+ + +S L V ++ G
Sbjct: 55 AIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAI----EGNQRTVMPVA 110
Query: 192 RNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIV 251
+ + I+ CSP NPT +++ + V
Sbjct: 111 LEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPT-GKVWTCDELEIMADLCERHGVRV 169
Query: 252 YDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYP 311
+ I AR ++S SK + + ++
Sbjct: 170 ISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLS 229
Query: 312 VIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLK 371
+K + + + + A + + L
Sbjct: 230 ALKGRDGLSSPSVLALTAHIA----AYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELN 285
Query: 372 VNGGKNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREY 429
++ W+ + ++E+ + +PG +G G +R++A R
Sbjct: 286 WQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSK 345
Query: 430 ISEACRRLKNFL 441
+ + L N +
Sbjct: 346 LEKGVAGLINAI 357
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 87.9 bits (216), Expect = 2e-19
Identities = 48/390 (12%), Positives = 99/390 (25%), Gaps = 15/390 (3%)
Query: 60 MRESEHIRKHPDARLIRLGIG--DTTQPIPDIITSAMAEHAFALSTVKGYK-GYGAEQGN 116
+RE DA I G G D + E + Y Y +G+
Sbjct: 28 IREILKFAADKDA--ISFGGGVPDPETFPRKELAEIAKE---IIEKEYHYTLQYSTTEGD 82
Query: 117 MALRTAIADKFYKDMGIEGD--EIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDT 174
L+ I + GI G + I L L +
Sbjct: 83 PVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAI 142
Query: 175 SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQ 234
+ F+ + + + + F + I+ S + T
Sbjct: 143 NAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSL 202
Query: 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294
+ +K + + + + + + + + G+R
Sbjct: 203 EKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLR 262
Query: 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYY 354
+G +E A+ ++ L + R
Sbjct: 263 IGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVM 322
Query: 355 KENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG 414
+ G+K + ++W+ P E ++ + +PG F
Sbjct: 323 LNALEEYF--SDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVY 380
Query: 415 G--NEHIRVS-AFGHREYISEACRRLKNFL 441
+ +R+S E I E +RL+ +
Sbjct: 381 DEPSPSMRLSFCLPPDEKIVEGIKRLREVV 410
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 58.6 bits (140), Expect = 4e-10
Identities = 44/372 (11%), Positives = 90/372 (24%), Gaps = 36/372 (9%)
Query: 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK 129
+L+ +P + A+ + L ++ Y + L A+A
Sbjct: 20 SPDQLLDFSANINPLGMPVSVKRALID---NLDCIERY----PDADYFHLHQALARHH-- 70
Query: 130 DMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189
+ I +G I + L + + P F Y L ++G
Sbjct: 71 --QVPASWILAGNGETESIFTVASGLKPRRAM-IVTPGFAEYGR----------ALAQSG 117
Query: 190 KYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSI 249
+ + D+ ++ +
Sbjct: 118 CEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLN 177
Query: 250 IVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309
I A P + S +KF G+RLG+ V ++ +
Sbjct: 178 INLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARM 237
Query: 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG 369
++ G ++ + + +E A L
Sbjct: 238 RRQQMPWSVNALAALAG-----------EVALQDSAWQQATWHWLREEGARFYQALCQLP 286
Query: 370 LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREY 429
L A Y+ ++ L IL + + + + RV+
Sbjct: 287 LLTVYPGRANYLLLRCERED--IDLQRRLLTQRILIRSCANYPGLDSRYYRVA-IRSAAQ 343
Query: 430 ISEACRRLKNFL 441
L+N L
Sbjct: 344 NERLLAALRNVL 355
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Score = 46.1 bits (107), Expect = 4e-06
Identities = 35/356 (9%), Positives = 88/356 (24%), Gaps = 33/356 (9%)
Query: 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEI-FISDGAQ 145
P I+ MA + + GYG + I + ++ FIS G Q
Sbjct: 14 PKIL-DLMARDN-----MTQHAGYGQDSHCAKAARLIGELL----ERPDADVHFISGGTQ 63
Query: 146 SDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF 205
+++ + L V + +T I K + + +
Sbjct: 64 TNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKL-RVADIESALH 122
Query: 206 FPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP 265
+++ + + + + + + A+ ++ P
Sbjct: 123 ENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVN 182
Query: 266 RSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFN 325
I + F +K R +
Sbjct: 183 DLTLADIARLTDMFYIGATKAGGMFGE------------ALIILNDALKPNARHLIKQRG 230
Query: 326 GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQF 385
G+ + + + A I+ ++ G+++ + ++
Sbjct: 231 ALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPIL 290
Query: 386 PGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS-AFGH-REYISEACRRLKN 439
+ AE+ + T+ G +R+ ++ + LK
Sbjct: 291 ENTMI----AELNNDFDMYTVEPLKDGTC---IMRLCTSWATEEKECHRFVEVLKR 339
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Score = 44.8 bits (104), Expect = 1e-05
Identities = 50/366 (13%), Positives = 110/366 (30%), Gaps = 53/366 (14%)
Query: 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE 134
L + + P P+ + + + + + L I + +
Sbjct: 22 TYLALNENPFPFPEDLVDEVFRRLNS-----DALRIYYDSPDEELIEKIL-SYLDTDFLS 75
Query: 135 GDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNI 194
+ + +I + ML+ S K
Sbjct: 76 KNNV-SVGNGADEIIYVMMLMFDRSVFFPPTYSCYRIFA----------------KAVGA 118
Query: 195 VYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDS 254
++ + D++F +PNNPTGH +++++ K + + ++
Sbjct: 119 KFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIER---ILKTGAFVALDEA 175
Query: 255 AYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIK 314
Y + S + E I +FSK R+G+ V E I
Sbjct: 176 YY-----EFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE--------KFID 222
Query: 315 DFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374
+NR+ + + A ++ D + + E + + A + +G ++
Sbjct: 223 AYNRVRLPFNVSYVSQMF----AKVALDHREIFEERTKFIVEERERMKSALREMGYRITD 278
Query: 375 GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEAC 434
+ +V+V + + K ++ E +R++ G RE
Sbjct: 279 SR-GNFVFVFMEKEEKERLLEHLRTK-NVAV-------RSFREGVRIT-IGKREENDMIL 328
Query: 435 RRLKNF 440
R L+ F
Sbjct: 329 RELEVF 334
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 37.5 bits (85), Expect = 0.002
Identities = 34/361 (9%), Positives = 89/361 (24%), Gaps = 32/361 (8%)
Query: 82 TTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFIS 141
P++ A+ +H+ YG ++ ++ + F +D+ + +
Sbjct: 12 IAGASPEVA-QALVKHS-----SGQAGPYGTDELTAQVKRKFCEIFERDVEV----FLVP 61
Query: 142 DGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP 201
G ++ L + + S + + T R
Sbjct: 62 TGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRL 121
Query: 202 ENNFFPDLSTTSRTDIIFFCSPNNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYI 260
+ T + T +++ + + K++ + D + A
Sbjct: 122 RERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANA 181
Query: 261 TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIV 320
S E+ V +K + + + +
Sbjct: 182 LVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVL----------FNTSLATEMSYRR 231
Query: 321 CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380
+ +S + LR ++ G++V GG A
Sbjct: 232 KRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANI 291
Query: 381 VWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIR--VSAFGHREYISEACRRLK 438
++ + + +L+ G +R S E + +++
Sbjct: 292 LFCRLDS----AMIDALLKAGFGFYH-----DRWGPNVVRFVTSFATTAEDVDHLLNQVR 342
Query: 439 N 439
Sbjct: 343 L 343
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 441 | |||
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.96 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.95 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.94 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.93 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.93 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.93 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.92 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.91 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.89 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.89 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.89 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.88 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.87 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.84 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.83 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.82 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.79 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.78 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.75 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.72 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.71 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.71 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.7 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.7 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.69 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.68 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.68 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.68 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.67 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.67 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.66 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.66 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.65 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.64 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.64 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.63 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.63 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.62 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.61 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.61 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.59 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.59 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.59 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.58 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.58 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.57 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.57 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.56 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.56 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.53 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.52 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.5 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.49 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.47 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.43 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.42 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.42 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.38 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.96 | |
| d1v4ra1 | 100 | Transcriptional repressor TraR, N-terminal domain | 97.19 | |
| d3bwga1 | 78 | Transcriptional regulator YydK {Bacillus subtilis | 97.13 | |
| d1hw1a1 | 74 | Fatty acid responsive transcription factor FadR, N | 97.11 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 96.99 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 90.2 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 87.52 |
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.5e-58 Score=449.16 Aligned_cols=341 Identities=23% Similarity=0.366 Sum_probs=293.6
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
|.++|+|++|+|++++|+.+.+++.+++. .+..+|++..|.++||+++++|+.+ +.++++++|++|+|+++++
T Consensus 30 G~~vi~l~~g~p~~~~p~~i~~a~~~~~~-----~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al 104 (382)
T d1b5pa_ 30 GVDLVALTAGEPDFDTPEHVKEAARRALA-----QGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL 104 (382)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHH-----TTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHH
T ss_pred CCCeEECCCCCCCCCCCHHHHHHHHHHHh-----cCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHH
Confidence 56899999999999999999999999887 4556899999999999999999975 6678899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.. +..++++||.|++++|+|++|...++..| .+++.++.++++++.++++. .++++++++||
T Consensus 105 ~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~ 172 (382)
T d1b5pa_ 105 FNLFQAILDPGDEVIVLSPYWVSYPEMVRFAG------------GVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNS 172 (382)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEES
T ss_pred HHHHHHhCCCCCEEEECCCCcHHHHHHHHHhc------------CeEEEEecccccccCCCHHHHHHhCCCCCeEEEECC
Confidence 97 67889999999999999999999999999 58899998877677666532 46789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
||||||.++|.+++++|+++|++||++||+||+|+++.+++.+.+.... .++++|+++||||.|++||+|+||+++++
T Consensus 173 P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~~~~~GlR~G~~~~~~ 250 (382)
T d1b5pa_ 173 PNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV--APEHTLTVNGAAKAFAMTGWRIGYACGPK 250 (382)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CTTTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc--CCCCEEEEecchhhccCcHhheEEEEECH
Confidence 9999999999999999999999999999999999999987765444433 45789999999999999999999999998
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++ ++.+..........++.+.|.++.+.+.+... .+++..++.++++++.+.+.+...|+.+..|++|+|
T Consensus 251 ~~--------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg~~ 322 (382)
T d1b5pa_ 251 EV--------IKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFY 322 (382)
T ss_dssp HH--------HHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTE
T ss_pred HH--------HHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCCceEE
Confidence 87 46666666666677888888877777764333 567888999999999999999988999988889999
Q ss_pred EEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|+++++ .++..+.+.+ .++||.+.||+.|+. ++++||+++.+++++++++++|+++|
T Consensus 323 ~~~~~~~~~~~~~~~~~~l-~e~gV~v~PG~~F~~--~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 323 VLMDTSPIAPDEVRAAERL-LEAGVAVVPGTDFAA--FGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp EEEECTTTCSSHHHHHHHH-HHTTEECEESGGGTC--TTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred EeEeCCCCCCCHHHHHHHH-HHCCEEEEeCcccCC--CCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence 9999963 3444455554 456999999999974 57999999889999999999999986
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=1.8e-58 Score=449.02 Aligned_cols=344 Identities=24% Similarity=0.401 Sum_probs=299.8
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~a 147 (441)
.+.++|+|++|+|++++|+.+.+++.+++. .+..+|++..|.++||+++|+|+.+ +.++++++|++|+|++++
T Consensus 28 ~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~-----~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~a 102 (388)
T d1j32a_ 28 EGIDVCSFSAGEPDFNTPKHIVEAAKAALE-----QGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQS 102 (388)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHH-----TTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred CCCCeEECCCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHH
Confidence 356899999999999999999999999886 4556899999999999999999975 677899999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..+++|||.|++++|+|++|...+...| .+++.++.+.++++.+++++ .+++++++++
T Consensus 103 l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~------------~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~ 170 (388)
T d1j32a_ 103 IFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAE------------GTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFN 170 (388)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHhc------------CeEEEEecccccccCCCHHHHHHhCCCCCeEEEEC
Confidence 998 57788999999999999999999999888 47888888777777666543 4688999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccC-CCcceeEEEecCCcccCCccceeEEEE
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIP-GAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~-~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
|||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++.... ...+++++++||||.|++||+|+||++
T Consensus 171 ~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~ 250 (388)
T d1j32a_ 171 TPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLA 250 (388)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEE
T ss_pred CCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEE
Confidence 9999999999999999999999999999999999999888754 44554442 123689999999999999999999999
Q ss_pred eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCc
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNA 378 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 378 (441)
+++++ ++.+..........++...|.++...+.+ ..+++++.++.++++++.+.+.|+++ |+.+..|++|
T Consensus 251 ~~~~~--------~~~~~~~~~~~~~~~~~~~q~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg 321 (388)
T d1j32a_ 251 GPVPL--------VKAATKIQGHSTSNVCTFAQYGAIAAYEN-SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGA 321 (388)
T ss_dssp CCHHH--------HHHHHHHHHTTTCSCCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBT
T ss_pred ECHHH--------HHHHHHhhhhccccccHHHHHHHhhcccc-hHHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCce
Confidence 99888 45666666666667889999988888763 35788999999999999999999987 8998888899
Q ss_pred eEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 379 PYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 379 ~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|+|++++ ..++.+++.++++++||.+.||+.|+. ++++||+++.+++++++++++|++++
T Consensus 322 ~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~--~~~~Rls~~~~~e~l~~al~rl~~~l 384 (388)
T d1j32a_ 322 FYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYATDLDTIKRGMERLEKFL 384 (388)
T ss_dssp TEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCC--CCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence 99999997 456788999999989999999999974 68999999888999999999999864
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.8e-58 Score=448.35 Aligned_cols=345 Identities=26% Similarity=0.405 Sum_probs=303.7
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--h-CCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--D-MGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~-~~~~~~~I~~t~G~~~al 148 (441)
+++|+|++|+|++++|+.+.+++.+++. .+..+|++..|..+||++||+|+.+ + ...++++|++|+|+++++
T Consensus 25 ~dvi~l~~g~p~~~~p~~v~~~~~~a~~-----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l 99 (388)
T d1gdea_ 25 KDVISLGIGEPDFDTPQHIKEYAKEALD-----KGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAF 99 (388)
T ss_dssp TTCEECCCCSCCSCCCHHHHHHHHHHHH-----TTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHH
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHh-----cCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHH
Confidence 5699999999999999999999999886 4556899999999999999999975 2 234678999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..+++|||.|++++|+|++|...+...| .+++.++++.++++.+|+++ .++++++++||
T Consensus 100 ~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~ 167 (388)
T d1gdea_ 100 LMGLSAFLKDGEEVLIPTPAFVSYAPAVILAG------------GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINS 167 (388)
T ss_dssp HHHHTTTCCTTCEEEEEESCCTTHHHHHHHHT------------CEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHhcCCCCEEEECCCCcHHHHHHHHHcC------------CEEEEeecccccCCCCCHHHHHHhCccCCeEEEECC
Confidence 98 57788999999999999999999999999 58999999877777766543 46899999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
||||||.++|.+++++|+++|++|+++||+||+|+++.+++. +.++..+++..+++|+++||||.||+||+|+||++++
T Consensus 168 P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~ 247 (388)
T d1gdea_ 168 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP 247 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC
T ss_pred CcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEee
Confidence 999999999999999999999999999999999999987754 4567777666789999999999999999999999999
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++. .+.+.........+++.+.|.++..++.+... ++++..++.++++++.+.+.|...++.+..|++|+|
T Consensus 248 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~f 319 (388)
T d1gdea_ 248 SWI--------IERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFY 319 (388)
T ss_dssp HHH--------HHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTE
T ss_pred ccc--------hhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCCCceEE
Confidence 987 45666666666677888999988888886544 678889999999999999999998888888889999
Q ss_pred EEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|++++ +.++.++++++++++||.+.||+.|+..+++++||+++.+++++++++++|++++
T Consensus 320 l~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l 382 (388)
T d1gdea_ 320 IFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVL 382 (388)
T ss_dssp ECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 999997 4577888999999999999999999887889999999888999999999999864
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.5e-57 Score=438.24 Aligned_cols=349 Identities=23% Similarity=0.340 Sum_probs=295.6
Q ss_pred CCCeEEeCCCCC---CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcH
Q 013521 71 DARLIRLGIGDT---TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~---~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~ 145 (441)
|.++|+|++|+| ++++|+.+.+++.+++. .+..+|++..|.++||++||+|+.+ ++.+++++|++|+|++
T Consensus 29 G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~-----~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~ 103 (395)
T d1xi9a_ 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK-----EGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVT 103 (395)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHH-----TTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHH
T ss_pred CCCeEECCCCCCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccc
Confidence 568999999987 68899999999999986 4456799999999999999999976 6778899999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEE
Q 013521 146 SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIF 219 (441)
Q Consensus 146 ~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~ 219 (441)
+++.+ +..++++||.|++++|+|+.+...+...| .+++.++...++++.++++. .+++++++
T Consensus 104 ~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g------------~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~ 171 (395)
T d1xi9a_ 104 EALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYG------------GKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA 171 (395)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred hhhhhhhhhhcCCCCEEEEcCCccccchhhhhhcC------------CEEEEEeccccccccchHHHHHHhhcccccEEE
Confidence 99998 67788999999999999999999999999 58888888777777776543 47889999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+||||||||.+++.+++++|+++|++|+++||+||+|.++.++..+.+...+. ..+++|+++||||.|++||+|+||++
T Consensus 172 l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~~~~GlRvG~~~ 250 (395)
T d1xi9a_ 172 VINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT-KDVPVIVMNGLSKVYFATGWRLGYMY 250 (395)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC-SSSCEEEEEESTTTTCCGGGCCEEEE
T ss_pred ecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcC-CCCCEEEEeCcchhcccchhhcEeeE
Confidence 99999999999999999999999999999999999999988876555555554 35689999999999999999999998
Q ss_pred eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCc
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNA 378 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 378 (441)
++.... .................+++.+.|.++..++.+ ..+|+++.++.++++++.+.+.|++. ++.+..|++|
T Consensus 251 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg 326 (395)
T d1xi9a_ 251 FVDPEN---KLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGA 326 (395)
T ss_dssp EECTTC---TTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBS
T ss_pred ecCHHH---HHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCee
Confidence 764321 000112222222334455788899988888873 35788999999999999999999988 4677778899
Q ss_pred eEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 379 PYVWVQFPG---SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 379 ~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|+|++++. .++.+++.++++++||.+.||+.|+..+++++||+++.+++++++++++|++++
T Consensus 327 ~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l 392 (395)
T d1xi9a_ 327 FYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFM 392 (395)
T ss_dssp SEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 999999962 467889999999999999999999887889999999888999999999999864
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=8.1e-56 Score=434.77 Aligned_cols=360 Identities=18% Similarity=0.283 Sum_probs=302.0
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--h
Q 013521 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--D 130 (441)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~ 130 (441)
..+.++.+.... .++|||+.|+|++++|+.+.+++.+++.+.. ...++|++..|.++||++||+|+.+ +
T Consensus 14 ~~~~~~~~~~~~-------~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~--~~~~~Y~~~~G~~~lReaiA~~~~~~~g 84 (418)
T d2r5ea1 14 SVWVEYIQLAAQ-------YKPLNLGQGFPDYHAPKYALNALAAAANSPD--PLANQYTRGFGHPRLVQALSKLYSQLVD 84 (418)
T ss_dssp CHHHHHHHHHHH-------HCCEECSSSCCSSCCCHHHHHHHHHHHTCSC--GGGGSCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcC-------CCCEEccCCCCCCCCCHHHHHHHHHHHhCCC--ccCcCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 456666544433 2589999999999999999999999987543 3456899999999999999999986 5
Q ss_pred CCCCC-CcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCc---
Q 013521 131 MGIEG-DEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF--- 205 (441)
Q Consensus 131 ~~~~~-~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~--- 205 (441)
..+++ ++|++|+|+++++.+ +..++++||.|++++|+|+.+...+...| .+++.+++++++..
T Consensus 85 ~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~ 152 (418)
T d2r5ea1 85 RTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAG------------GIPRFIPLKPNKTGGTI 152 (418)
T ss_dssp SCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEESCCSSCE
T ss_pred CCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHHHcC------------CeEEEEEecccccccch
Confidence 56664 799999999999998 67889999999999999999999999999 58888888765332
Q ss_pred -----cCCCC-----CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCC
Q 013521 206 -----FPDLS-----TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGA 274 (441)
Q Consensus 206 -----~~~~~-----~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~ 274 (441)
..+.+ ...+++++++|+||||||.++|.+++++|+++|++||++||+||+|.++.+++. ..++..+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~ 232 (418)
T d2r5ea1 153 SSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGM 232 (418)
T ss_dssp EGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT
T ss_pred hhhhhhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccc
Confidence 12211 146889999999999999999999999999999999999999999999888754 4566667667
Q ss_pred cceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC------CcHHHHH
Q 013521 275 REVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP------DGFQALR 348 (441)
Q Consensus 275 ~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~------~~~~~~~ 348 (441)
.+++++++|+||.+++||+|+||+++++++ ++.+.........+.+.+.|.++...+.. ...++++
T Consensus 233 ~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~--------i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 304 (418)
T d2r5ea1 233 WERTITIGSAGKTFSLTGWKIGWAYGPEAL--------LKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFN 304 (418)
T ss_dssp GGGEEEEEEHHHHTTCGGGCCEEEESCHHH--------HHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHH
T ss_pred cceeeeeecCCccccCCCcccccccccchh--------hhhhhhcccccccccccchhhhccccccccccccccchhhHH
Confidence 789999999999999999999999999988 46677666666667888888877766541 2236789
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC-------------CChHHHHHHHHHhcCeEEeCCCCcCCC-
Q 013521 349 TVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG-------------SSSWDVFAEILEKTHILTIPGSGFGPG- 414 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ll~~~gi~v~pg~~f~~~- 414 (441)
++++.|+.+++.+.+.|++.|+.+..|++|+|+|+++++ .++.++++++++++||.+.||+.|+..
T Consensus 305 ~~~~~~~~~r~~l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~ 384 (418)
T d2r5ea1 305 SISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP 384 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGG
T ss_pred HHHHHHHHhhhhHHhhHhhcCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCC
Confidence 999999999999999999999999989999999999852 246788999999999999999999753
Q ss_pred ----CCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 415 ----GNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 415 ----~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++++||||++.+++++++++++|++++
T Consensus 385 ~~~~g~~~iRis~~~~~e~l~~a~~rl~~~l 415 (418)
T d2r5ea1 385 NKHLGEDFVRYCFFKKDENLQKAAEILRKWK 415 (418)
T ss_dssp GHHHHTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 358999999889999999999999864
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.1e-55 Score=423.94 Aligned_cols=352 Identities=24% Similarity=0.410 Sum_probs=298.9
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCC
Q 013521 56 PEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGI 133 (441)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~ 133 (441)
.++.+.......+ ++++|+|++|+|++++|+.+.+++.+++. .+..+|++..|..+||+++++|+.+ +..+
T Consensus 14 ~~~~~~a~~~~~~--G~~vI~l~~G~p~~~~p~~i~~~~~~~~~-----~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~ 86 (375)
T d1o4sa_ 14 MELDAKAKALIKK--GEDVINLTAGEPDFPTPEPVVEEAVRFLQ-----KGEVKYTDPRGIYELREGIAKRIGERYKKDI 86 (375)
T ss_dssp HHHHHHHHHHHHT--TCCCEECCCSSCSSCCCHHHHHHHHHHHT-----TCCCCCCCTTCCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHC--CCCeEECCCcCCCCCCCHHHHHHHHHHHh-----cCCcCCCCCcCCHHHHHHHHhhhhhcccccc
Confidence 3444444444433 56799999999999999999999999876 4556899999999999999999975 6678
Q ss_pred CCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-
Q 013521 134 EGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST- 211 (441)
Q Consensus 134 ~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~- 211 (441)
++++|++|+|+++++.+ +..++++||.|++++|+|+.+...+...+ .....++.+.++++.++.+.
T Consensus 87 ~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 154 (375)
T d1o4sa_ 87 SPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAG------------GTVNVVETFMSKNFQPSLEEV 154 (375)
T ss_dssp CGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECCGGGTTCCCHHHH
T ss_pred ccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhccc------------cccccccccccccccchhHHH
Confidence 89999999999999998 67789999999999999999999998888 47777777776666665432
Q ss_pred ----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcc
Q 013521 212 ----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKF 287 (441)
Q Consensus 212 ----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 287 (441)
..++++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.++..+.+.....+..+++|+++||||.
T Consensus 155 ~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 234 (375)
T d1o4sa_ 155 EGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKS 234 (375)
T ss_dssp HHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTT
T ss_pred HHhhccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhh
Confidence 4788999999999999999999999999999999999999999999988876665555555667899999999999
Q ss_pred cCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 013521 288 AGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 288 ~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 367 (441)
+++||+|+||++++++. ++.+...........+.+.+..+...+.... ...++.++++++.+.+.|++
T Consensus 235 ~~l~G~R~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~~~~~~~l~~ 302 (375)
T d1o4sa_ 235 HSMTGWRVGYLISSEKV--------ATAVSKIQSHTTSCINTVAQYAALKALEVDN----SYMVQTFKERKNFVVERLKK 302 (375)
T ss_dssp TTCGGGCCEEEECCHHH--------HHHHHHHHHHHTCSCCHHHHHHHHHHTTCCC----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccccccccccccc--------hhhhhhhhccccccccccchhhhhhhcccch----hhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999988 4556655665566677777877776665332 55677899999999999999
Q ss_pred CCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 368 LGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.|+++..|++|+|+|+++++ ++.+++.++++++||.+.||+.|+. ++||||+++.+++++++++++|++++
T Consensus 303 ~g~~~~~p~gg~f~~~~~~~-~~~~~~~~ll~~~gV~v~pG~~F~~--~g~iRis~~~~~e~l~~al~rl~~~l 373 (375)
T d1o4sa_ 303 MGVKFVEPEGAFYLFFKVRG-DDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFATSIERLTEALDRIEDFL 373 (375)
T ss_dssp TTCCCCCCSBSSEEEEECSS-CHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred cCceEecCCccEEEEEECCC-CHHHHHHHHHHhCCEEEEEccccCC--CCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 99999888899999999986 6788899999988999999999974 67999999888999999999999874
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=1.2e-54 Score=425.78 Aligned_cols=349 Identities=21% Similarity=0.337 Sum_probs=284.2
Q ss_pred CCeEEeCCCCCCCC----CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--------hCCCCCCcEE
Q 013521 72 ARLIRLGIGDTTQP----IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--------DMGIEGDEIF 139 (441)
Q Consensus 72 ~~~i~l~~g~~~~~----~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--------~~~~~~~~I~ 139 (441)
.++|+|++|+|+++ .++.+.+++.+.+.. ....+|++..|.++||++||+|+.+ +.++++++|+
T Consensus 30 ~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~ 105 (412)
T d1bw0a_ 30 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS----QECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV 105 (412)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT----TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred CCcEECcCCCCCCCCCccccHHHHHHHHHHhhC----CCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEE
Confidence 57999999998754 346677777776654 5667899999999999999999975 2347899999
Q ss_pred EcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC
Q 013521 140 ISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS 213 (441)
Q Consensus 140 ~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~ 213 (441)
+|+|+++++.+ +..++++||.|++++|+|+.+...+...| .+++.+++++++++..+++. ..
T Consensus 106 it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G------------~~~~~v~~~~~~~~~~~~~~l~~~~~~ 173 (412)
T d1bw0a_ 106 LCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYG------------IGMHFYNCRPENDWEADLDEIRRLKDD 173 (412)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEEEGGGTTEECHHHHHHHCCT
T ss_pred EecccccchhhhhhhhhccccceeeeeccchhhhhhhhccC------------ccccccccccccccchhhHHHHhhhhc
Confidence 99999999997 67889999999999999999999999999 58999999887777666432 47
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCccccc---CCCcceeEEEecCCcccC
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEI---PGAREVAIEISSFSKFAG 289 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~---~~~~~~~i~i~S~SK~~~ 289 (441)
++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++. +.+.... .....++++++||||.++
T Consensus 174 ~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~ 253 (412)
T d1bw0a_ 174 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLV 253 (412)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTS
T ss_pred cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCc
Confidence 889999999999999999999999999999999999999999999988764 2222221 112356799999999999
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL- 368 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 368 (441)
++|+|+||++++++.... ...+.......... .+++.+.|.++...+.+...++++++++.++++++.+.+.|.+.
T Consensus 254 ~~G~RvG~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~ 330 (412)
T d1bw0a_ 254 VPGWRLGWLLYVDPHGNG--PSFLEGLKRVGMLV-CGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECI 330 (412)
T ss_dssp CGGGCCEEEEEECTTCSC--HHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred cCCCCcccccccchhhcc--hhhhhhhccccccc-cCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhc
Confidence 999999999999876421 12222333333333 33555666655555554556789999999999999999999876
Q ss_pred CCeeeCCCCceEEEEEcCC------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 369 GLKVNGGKNAPYVWVQFPG------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|+.+..|.+|+|+|++++. .++.++++++++++||.+.||+.|+ .+++|||+++.++++++++++||++++
T Consensus 331 g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg--~~g~iRis~~~~~e~l~eal~Rl~~~l 407 (412)
T d1bw0a_ 331 GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH--APGFTRLTTTRPVEVYREAVERIKAFC 407 (412)
T ss_dssp TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT--CTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccC--CCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 8999888999999999861 3678899999999999999999997 467999999889999999999999864
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=7.5e-55 Score=424.56 Aligned_cols=347 Identities=15% Similarity=0.181 Sum_probs=283.2
Q ss_pred CCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHH
Q 013521 69 HPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQS 146 (441)
Q Consensus 69 ~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~ 146 (441)
..+.++|+|++|+|++++|+.+.+++.+++.+ +.++|+ .|..+||++||+|+.+ ++.+++++|++|+|+++
T Consensus 28 ~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~-----~~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~ 100 (394)
T d1c7na_ 28 EVGNEVVPLSVADMEFKNPPELIEGLKKYLDE-----TVLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVP 100 (394)
T ss_dssp TCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHH-----CCCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred hcCCCeEEccCCCCCCCCCHHHHHHHHHHHhC-----CCcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchh
Confidence 34578999999999999999999999998873 455784 4789999999999975 66788999999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC-CCccCCCC------CCCCccEE
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE-NNFFPDLS------TTSRTDII 218 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~------~~~~~~~v 218 (441)
++.+ +..+++|||.|++++|.|+++...+...| ...+.++.... ..+..+.+ ..++++++
T Consensus 101 al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g------------~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 168 (394)
T d1c7na_ 101 AVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQE------------RKIIECELLEKDGYYTIDFQKLEKLSKDKNNKAL 168 (394)
T ss_dssp HHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTT------------CEEEECCCEEETTEEECCHHHHHHHHTCTTEEEE
T ss_pred hhhhhhccccccccccccccCcccchhhHHhhhh------------hcccccccccccccccchhhhhhhhhccccceEE
Confidence 9997 68889999999999999999999998888 46666665433 33334422 14679999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC-ccccc-CCCcceeEEEecCCcccCCccceeE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR-SIYEI-PGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~-~~~~~-~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
++||||||||.++|.+++++|+++|++|+++||+||+|.++.+++... +.... .+..++++++.|+||.++++|+|+|
T Consensus 169 ~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g 248 (394)
T d1c7na_ 169 LFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMS 248 (394)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCE
T ss_pred EecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccc
Confidence 999999999999999999999999999999999999999999876432 22222 2234688999999999999999999
Q ss_pred EEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeeC
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVNG 374 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~ 374 (441)
|+++++..+ .+.+...........+...+.++.........++.+++++.++++++.+.+.++.. ++.+..
T Consensus 249 ~~~~~~~~i-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (394)
T d1c7na_ 249 NIIIKNPDI-------RERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPL 321 (394)
T ss_dssp EEECCCHHH-------HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCC
T ss_pred cccccChhh-------hhhhhhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeecC
Confidence 999988765 45565555544444444434333333333345778999999999999999998875 677777
Q ss_pred CCCceEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|++++|+|++++ +.++.+++.+|++++||.+.||+.|+..+++++|||++.+++++++++++|++++
T Consensus 322 p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l 390 (394)
T d1c7na_ 322 IEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKAL 390 (394)
T ss_dssp CSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 889999999997 4578889999999999999999999987889999999888999999999998864
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-54 Score=425.56 Aligned_cols=347 Identities=19% Similarity=0.288 Sum_probs=294.8
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCC-CcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEG-DEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~-~~I~~t~G~~~a 147 (441)
+.++|+|++|.|++++|+.+.+++.+++.. .....+|++..|.++||++||+|+.+ +..+++ ++|++|+|++++
T Consensus 24 ~~dvI~l~~G~p~~~~p~~v~~a~~~al~~---~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~a 100 (418)
T d1w7la_ 24 EHDVVNLGQGFPDFPPPDFAVEAFQHAVSG---DFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 100 (418)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTSS---CGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred CCCCEECCCCCCCCCCCHHHHHHHHHHHhC---CCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHH
Confidence 357999999999999999999999998864 13355799999999999999999976 455554 689999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC----------CCccCCCC-----C
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE----------NNFFPDLS-----T 211 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~----------~~~~~~~~-----~ 211 (441)
+.+ +..++++||.|++++|+|+.|...+...| .+++.++.++. .++.++.+ .
T Consensus 101 l~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g------------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 168 (418)
T d1w7la_ 101 LFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAG------------GRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF 168 (418)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEECC---CCSEEGGGEECCHHHHHHHC
T ss_pred HHHHHHhhccCCceeeccccccchhHHHHHHcC------------CEeeccccccccccccccccccCcccchhhhhccc
Confidence 998 67788999999999999999999999999 46666665432 12333322 1
Q ss_pred CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCC
Q 013521 212 TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 212 ~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
.++++++++++||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++.++++..++++++.|+||.+++
T Consensus 169 ~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 248 (418)
T d1w7la_ 169 TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSA 248 (418)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTC
T ss_pred cccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccC
Confidence 46788999999999999999999999999999999999999999999998764 56777777677899999999999999
Q ss_pred ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG------FQALRTVIDYYKENAKIIVDA 364 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~~l~~~ 364 (441)
||+|+||+++++++ +..+.........+++.+.|.++..++.+.. .+++..+++.++++++.+.+.
T Consensus 249 pG~RvG~~v~~~~~--------~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d1w7la_ 249 TGWKVGWVLGPDHI--------MKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRS 320 (418)
T ss_dssp GGGCCEEEECCHHH--------HHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccchhh--------hhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhh
Confidence 99999999999987 4677777777777789999988888775321 357889999999999999999
Q ss_pred HHhCCCeeeCCCCceEEEEEcCC--------------CChHHHHHHHHHhcCeEEeCCCCcCC-----CCCCeEEEEeec
Q 013521 365 FQSLGLKVNGGKNAPYVWVQFPG--------------SSSWDVFAEILEKTHILTIPGSGFGP-----GGNEHIRVSAFG 425 (441)
Q Consensus 365 L~~~g~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~~iRls~~~ 425 (441)
|++.|+++..|.+|+|+|++++. ..+.+++.++++++||.+.||+.|+. .+++|||||++.
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~ 400 (418)
T d1w7la_ 321 LQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK 400 (418)
T ss_dssp HHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC
T ss_pred hhhcCCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcC
Confidence 99999999888999999998741 23578899999999999999999963 357899999988
Q ss_pred CHHHHHHHHHHHHhh
Q 013521 426 HREYISEACRRLKNF 440 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~ 440 (441)
+++++++++++|+++
T Consensus 401 ~~~~l~~a~~rl~~~ 415 (418)
T d1w7la_ 401 DEATLQAMDEKLRKW 415 (418)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999875
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-53 Score=413.25 Aligned_cols=354 Identities=21% Similarity=0.310 Sum_probs=301.3
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--h
Q 013521 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--D 130 (441)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~ 130 (441)
+.|.++.+.... .++|||++|.|++++|+.+.+++.+++. .+.++|++..|..+||++||+|+.+ +
T Consensus 14 ~~~~~~~~~a~~-------~~~i~l~~G~Pd~~~p~~i~~a~~~~~~-----~~~~~Y~~~~G~~~LReaia~~~~~~~g 81 (382)
T d1u08a_ 14 TIFTQMSALAQQ-------HQAINLSQGFPDFDGPRYLQERLAHHVA-----QGANQYAPMTGVQALREAIAQKTERLYG 81 (382)
T ss_dssp CHHHHHHHHHHH-------TTCEECCCSSCSSCCCHHHHHHHHHHHH-----TTCCSCCCTTCCHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHhcc-------CCCEEccCCCCCCCCCHHHHHHHHHHHh-----cCCCCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 566766665322 3689999999999999999999999886 4556899999999999999999986 5
Q ss_pred CCCCCC-cEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC
Q 013521 131 MGIEGD-EIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD 208 (441)
Q Consensus 131 ~~~~~~-~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~ 208 (441)
..++++ +|++|+|+++++.+ +..++++||.|++++|+|+.+...+...| ..++.++.+.+ ++..|
T Consensus 82 ~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d 148 (382)
T d1u08a_ 82 YQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSG------------GIVKRMALQPP-HFRVD 148 (382)
T ss_dssp CCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECCTT-TCCCC
T ss_pred CCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhhhhcc------------ccceecccccc-cccCC
Confidence 556666 59999999999998 68889999999999999999999999988 46677776653 55555
Q ss_pred CCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEe
Q 013521 209 LST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEIS 282 (441)
Q Consensus 209 ~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~ 282 (441)
+++ .+++++++++|||||||.+++.+++++|+++|.+++++++.|++|..+.+++. +.+....+...+++|++.
T Consensus 149 ~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 228 (382)
T d1u08a_ 149 WQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVS 228 (382)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEE
T ss_pred HHHHhhhhccCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEe
Confidence 432 47899999999999999999999999999999999999999999998777653 333333333467899999
Q ss_pred cCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 013521 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 283 S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 362 (441)
|+||.+++||+|+||+++++++ ++.+.........+++.+.|.++..++.+. .+++..+++.++++++.+.
T Consensus 229 s~SK~~~~pG~RiG~~v~~~~~--------~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~ 299 (382)
T d1u08a_ 229 SFGKTYHMTGWKVGYCVAPAPI--------SAEIRKVHQYLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILV 299 (382)
T ss_dssp EHHHHTTCGGGCCEEEECCHHH--------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHH
T ss_pred eccccccCCcccchhhhccchh--------HHHHHhhhcccccccccccccccccccccc-hHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999888 466777777777789999999999988743 4788999999999999999
Q ss_pred HHHHhCCCeeeCCCCceEEEEEcC---CCChHHHHHHHHHhcCeEEeCCCCcCC--CCCCeEEEEeecCHHHHHHHHHHH
Q 013521 363 DAFQSLGLKVNGGKNAPYVWVQFP---GSSSWDVFAEILEKTHILTIPGSGFGP--GGNEHIRVSAFGHREYISEACRRL 437 (441)
Q Consensus 363 ~~L~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~iRls~~~~~~~~~~~l~~l 437 (441)
+.+...|+.+..|.+|+|+|++++ ..++.+++.++++++||.+.||+.|+. .+.++||||++.++++++++++||
T Consensus 300 ~~~~~~g~~~~~p~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL 379 (382)
T d1u08a_ 300 NALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERL 379 (382)
T ss_dssp HHTTSSSCEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHH
T ss_pred hhhccCCcEEecCCceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHH
Confidence 999888999999999999999997 357788999999999999999999964 356899999988899999999999
Q ss_pred Hhh
Q 013521 438 KNF 440 (441)
Q Consensus 438 ~~~ 440 (441)
+++
T Consensus 380 ~~l 382 (382)
T d1u08a_ 380 RQL 382 (382)
T ss_dssp TTC
T ss_pred hCC
Confidence 874
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.5e-52 Score=406.30 Aligned_cols=343 Identities=20% Similarity=0.301 Sum_probs=286.6
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~a 147 (441)
.+.++|+|+.|+|++++|+.+.+++.++. ....+|++..|.++||+++|+|+.+ +..+++++|++|+|++++
T Consensus 26 ~g~~vi~l~~G~p~~~~p~~~~~al~~~~------~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~ 99 (389)
T d2gb3a1 26 RGVRIHHLNIGQPDLKTPEVFFERIYENK------PEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEA 99 (389)
T ss_dssp TTCEEEECSSCCCCSCCCTHHHHHHHHTC------CSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHH
T ss_pred cCCCEEECCCCCCCCCCCHHHHHHHHhcC------CCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccc
Confidence 35789999999999999999888887642 4567899999999999999999975 566789999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC--C--CCCCccEEEEcC
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL--S--TTSRTDIIFFCS 222 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~--~--~~~~~~~v~i~~ 222 (441)
+.+ +..++++||.|++++|+|+.+...+...| ..++.++.+.++....+. . ..+++++++++|
T Consensus 100 l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n 167 (389)
T d2gb3a1 100 ILFSFAVIANPGDEILVLEPFYANYNAFAKIAG------------VKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSN 167 (389)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHT------------CEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEES
T ss_pred ccccccccccCCCeEEEeCCCCccccccccccC------------ccccccccccccccchhhhhhhhcccCccEEEeCC
Confidence 998 57788999999999999999999999999 477778776654332221 1 147889999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
||||||.++|.+++++|+++|++|+++||+||+|.++.+++.+.+.... ..++++++.|+||.+++||+|+||+++++
T Consensus 168 P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~--~~~~~~v~~s~sK~~~~~GlRiG~~~~~~ 245 (389)
T d2gb3a1 168 PCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI--ESDKVVVIDSVSKKFSACGARVGCLITRN 245 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS--CCTTEEEEEESTTTTTCGGGCCEEEECSC
T ss_pred CCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccccccc--ccccccccccccccccCcccceeeeeccc
Confidence 9999999999999999999999999999999999999988765555444 35778999999999999999999999988
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCceEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGL-KVNGGKNAPYV 381 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~ 381 (441)
+.+ .+.... ......+.+.+.|.++..++. ....+++.+++.++++++.+.+.|+++|+ .+..|++|+|+
T Consensus 246 ~~i-------~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~ 316 (389)
T d2gb3a1 246 EEL-------ISHAMK-LAQGRLAPPLLEQIGSVGLLN-LDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYI 316 (389)
T ss_dssp HHH-------HHHHHH-HHHHSCCCCHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEE
T ss_pred hhH-------HHHHhh-hhhcccccccccccccccccc-ccchhcccccccccccchhhhhhhhhhccccccCCCceEEE
Confidence 764 333333 344455567788887777776 34578899999999999999999999964 45667899999
Q ss_pred EEEcCCCChHHHHHHHHHh-----cCeEEeCCCCcCC---CCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 382 WVQFPGSSSWDVFAEILEK-----THILTIPGSGFGP---GGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 382 ~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~---~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|++++..++.++++.++++ +||.+.||+.|+. .+++++||+++.+++++++++++|+++|
T Consensus 317 ~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~l 384 (389)
T d2gb3a1 317 TAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGL 384 (389)
T ss_dssp EEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHH
Confidence 9999977888999998876 4789999998863 2468999999888999999999998763
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-52 Score=400.92 Aligned_cols=341 Identities=17% Similarity=0.255 Sum_probs=277.2
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHHH-
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~~- 150 (441)
+|.|++|+|++++|+.+.+++.+++. .+..+|++..| .++|++|++|+.+ +..+++++|++|+|+++++..
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~-----~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~ 74 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLM-----HGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSEL 74 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHT-----TCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHH
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHh-----CCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHH
Confidence 48999999999999999999999886 44568988777 6899999999976 566789999999999999997
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC-CCccCCCCC------CCCccEEEEcCC
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE-NNFFPDLST------TSRTDIIFFCSP 223 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~~------~~~~~~v~i~~p 223 (441)
+..+++|||+|++++|+|+++..++...| .+++.++.+.+ +++.++++. .+++++++++||
T Consensus 75 ~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p 142 (361)
T d1d2fa_ 75 IRQWSETGEGVVIHTPAYDAFYKAIEGNQ------------RTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSP 142 (361)
T ss_dssp HHHSSCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESS
T ss_pred hhhccccccccccccccccchhHHHHhhc------------ceEEeecccccccccccccccchhhcccCCceeEEeccc
Confidence 67788999999999999999999999888 47777776543 344455332 468999999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|||||.++|.+++++|+++|+++|++||+||+|.++.+++. +.++... ..++++++.|+||.++++|+|+||++++.
T Consensus 143 ~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~--~~~~~v~~~s~SK~~~~~g~R~g~~~~~~ 220 (361)
T d1d2fa_ 143 QNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV--ARGDWALLTSGSKSFNIPALTGAYGIIEN 220 (361)
T ss_dssp CTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT--CCSSEEEEECSHHHHTCGGGCCEEEEECS
T ss_pred ccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccc--cccccccccccccccccccccceeeecch
Confidence 99999999999999999999999999999999999988754 3444444 35678999999999999999999998876
Q ss_pred cccccCCchhHHHHHHHHhhhc-CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeeCCCCce
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCF-NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVNGGKNAP 379 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~ 379 (441)
.... .+.......... .+++...+.++...+. ....+.++.+..++++++.+.+.+.+. ++.+..|++|+
T Consensus 221 ~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~ 293 (361)
T d1d2fa_ 221 SSSR------DAYLSALKGRDGLSSPSVLALTAHIAAYQ-QGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTY 293 (361)
T ss_dssp HHHH------HHHHHHHHTTSCCCSCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCS
T ss_pred hHHH------HHHhhhcccccccccchhhhHHHHHHHhh-ccchhhhcccccchhhHHHHHHHhhhhcccccccccCcee
Confidence 5531 122222222222 2234444444444443 334677889999999999998887765 77777788899
Q ss_pred EEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 380 YVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 380 ~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|+|++++ +.++.+++.+|++++||.+.||+.|+..+.++||||++.+++++++++++|++++
T Consensus 294 ~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l 357 (361)
T d1d2fa_ 294 LAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAI 357 (361)
T ss_dssp EEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHH
Confidence 9999995 5688899999999999999999999988889999999888999999999998864
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.5e-51 Score=395.23 Aligned_cols=352 Identities=24% Similarity=0.381 Sum_probs=289.1
Q ss_pred ccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHH
Q 013521 46 MESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIAD 125 (441)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 125 (441)
...++. ++|.++...... .++|||++|.|++++|+.+.+++.+++.+ ..+|+++.|..+||++||+
T Consensus 7 ~~~~~~-~~~~~~~~la~~-------~~~I~ls~g~p~~~~p~~i~~al~~~l~~------~~~Y~~~~G~~elr~aiA~ 72 (368)
T d1v2da_ 7 TEAAKE-SIFPRMSGLAQR-------LGAVNLGQGFPSNPPPPFLLEAVRRALGR------QDQYAPPAGLPALREALAE 72 (368)
T ss_dssp GGGC----CHHHHHHHHHH-------HTCEECCCCSCSSCCCHHHHHHHHHHTTT------SCSCCCTTCCHHHHHHHHH
T ss_pred hhhcCC-CHHHHHHHHhcc-------CCCEEecCCCCCCCCCHHHHHHHHHHhhc------ccCCCCCcCCHHHHHHHHh
Confidence 344443 667766544332 14899999999999999999999997742 3579999999999999999
Q ss_pred HHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC-C
Q 013521 126 KFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE-N 203 (441)
Q Consensus 126 ~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~-~ 203 (441)
++ ++++++|++|+|+++++.+ +..++++||.|++++|+|+.+...+...| .+++.++++.. +
T Consensus 73 ~~----~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~ 136 (368)
T d1v2da_ 73 EF----AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAG------------AKARLVRLDLTPE 136 (368)
T ss_dssp HH----TSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEEETT
T ss_pred hc----ccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcC------------Cccceeccccccc
Confidence 97 8999999999999999998 67888999999999999999999999998 46666666432 2
Q ss_pred CccCCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCccee
Q 013521 204 NFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVA 278 (441)
Q Consensus 204 ~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~ 278 (441)
.+.+|.+. .+++++++++|||||||.+++.+++++|+++|++||++||+||+|.++............ ..++.
T Consensus 137 ~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~--~~~~~ 214 (368)
T d1v2da_ 137 GFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF--APERT 214 (368)
T ss_dssp EEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH--CTTTE
T ss_pred cccCCHHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccc--ccccc
Confidence 34444321 467899999999999999999999999999999999999999999977665433322222 24567
Q ss_pred EEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHH
Q 013521 279 IEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKEN 357 (441)
Q Consensus 279 i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~ 357 (441)
+++.|+||.++++|+|+||+++++++ .+.+...+.....+++.+.|.++.+++..... ++++..++.++++
T Consensus 215 ~~~~~~sk~~~~~G~R~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 286 (368)
T d1v2da_ 215 FTVGSAGKRLEATGYRVGWIVGPKEF--------MPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRR 286 (368)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCTTT--------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred ceeecccccccccccccccccccccc--------cchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHh
Confidence 88999999999999999999999988 46677777777777889999888888764333 5789999999999
Q ss_pred HHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC--CCCCeEEEEeecCHHHHHHHHH
Q 013521 358 AKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP--GGNEHIRVSAFGHREYISEACR 435 (441)
Q Consensus 358 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~iRls~~~~~~~~~~~l~ 435 (441)
++.+.+.|+++|+++..+++|+|+|+++++.+.. ++++++||.+.||+.|+. .++++||||++.++++++++++
T Consensus 287 ~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~~~~----~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~ 362 (368)
T d1v2da_ 287 RDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAF----RLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALE 362 (368)
T ss_dssp HHHHHHHHHHTTCCEECCSBSSEEEEECTTCCHH----HHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHH
T ss_pred hhhhhhhHHhcCcEEecCCceeEEEEeCCccHHH----HHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHH
Confidence 9999999999999999888899999999865543 456778999999999964 3578999999888999999999
Q ss_pred HHHhhC
Q 013521 436 RLKNFL 441 (441)
Q Consensus 436 ~l~~~l 441 (441)
+|+++|
T Consensus 363 rL~~~l 368 (368)
T d1v2da_ 363 RLGRVV 368 (368)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999986
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=4.1e-51 Score=402.10 Aligned_cols=348 Identities=20% Similarity=0.296 Sum_probs=279.1
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccC------CCCCCCCCCCcCcHHHHHHHHHHHhhh----CCCCCCcEEEc
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALST------VKGYKGYGAEQGNMALRTAIADKFYKD----MGIEGDEIFIS 141 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~------~~~~~~Y~~~~g~~~lr~~ia~~l~~~----~~~~~~~I~~t 141 (441)
.++|+|+++++.+ ..+.+.+.+.+....... .....+|++..|.++||++||+|+.+. ..+++++|++|
T Consensus 36 ~G~i~l~~aen~l-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit 114 (428)
T d1iaya_ 36 NGVIQMGLAENQL-CLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMA 114 (428)
T ss_dssp TSBEECSSCCCCS-SHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEE
T ss_pred CceEEeecccCcc-chHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEc
Confidence 4699999999765 345555555543211100 012347999999999999999999763 34579999999
Q ss_pred CCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHh-ccccccccccCccceeEEeecCCCCCccCCCC---------
Q 013521 142 DGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKFLKETGKYRNIVYMNCRPENNFFPDLS--------- 210 (441)
Q Consensus 142 ~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~--------- 210 (441)
+|+++++.+ +..+++|||.|++++|+|+++...+... | .+++.++.+.++++.++.+
T Consensus 115 ~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g------------~~~v~v~~~~~~~~~~d~~~~~~~~~~~ 182 (428)
T d1iaya_ 115 GGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTG------------VQLIPIHCESSNNFKITSKAVKEAYENA 182 (428)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTC------------CEEEEECCCTTTTTCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcC------------CeEEEeecccccccccccccccchhhhh
Confidence 999999998 6788999999999999999998777654 4 5889999988777777643
Q ss_pred --CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccC-------CCcceeEE
Q 013521 211 --TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIP-------GAREVAIE 280 (441)
Q Consensus 211 --~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~-------~~~~~~i~ 280 (441)
..+++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++. +.++.++. ...+++++
T Consensus 183 ~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~ 262 (428)
T d1iaya_ 183 QKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHI 262 (428)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEE
T ss_pred hccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEE
Confidence 246789999999999999999999999999999999999999999999988754 44554432 13478999
Q ss_pred EecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHH
Q 013521 281 ISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYKENA 358 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~ 358 (441)
++||||.|+++|+|+||++++++.+ .+.+..... ....+.+.|.++.+.+.+..+ .++++.++.+++++
T Consensus 263 ~~s~SK~~~~~GlRiG~~~~~~~~l-------~~~~~~~~~--~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~ 333 (428)
T d1iaya_ 263 VYSLSKDMGLPGFRVGIIYSFNDDV-------VNCARKMSS--FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRH 333 (428)
T ss_dssp EEESTTTSSCGGGCEEEEEESCHHH-------HHHHHHHHT--TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCcccCCCcccccccccccch-------hhhhhhhhc--ccccccccccchhhhhhhhccccccccccccccchhH
Confidence 9999999999999999999977654 344433322 334677777777777775444 57888999999999
Q ss_pred HHHHHHHHhCCCeeeCCCCceEEEEEcCCC-------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHH
Q 013521 359 KIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYI 430 (441)
Q Consensus 359 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~ 430 (441)
+.+.+.|+..|+++..+++|+|+|++++.. ++.++++.+++++||.+.||+.|+..++++|||+++. +++++
T Consensus 334 ~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l 413 (428)
T d1iaya_ 334 KHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTV 413 (428)
T ss_dssp HHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHH
T ss_pred HHHHHHHHhCCCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHH
Confidence 999999999999998888999999999621 2446788999999999999999998889999999965 67789
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
+++++||+++|
T Consensus 414 ~~al~Rl~~~l 424 (428)
T d1iaya_ 414 DIALARIRRFV 424 (428)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=7.1e-51 Score=400.77 Aligned_cols=348 Identities=20% Similarity=0.278 Sum_probs=276.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhh--cc-----CCCCCCCCCCCcCcHHHHHHHHHHHhhh----CCCCCCcEEEc
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFA--LS-----TVKGYKGYGAEQGNMALRTAIADKFYKD----MGIEGDEIFIS 141 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~--~~-----~~~~~~~Y~~~~g~~~lr~~ia~~l~~~----~~~~~~~I~~t 141 (441)
++|+|+++++.+. .+.+.+.+.+.... .. ......+|++..|.++||++||+|+.+. ..++|++|++|
T Consensus 37 G~i~l~~~en~l~-~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it 115 (431)
T d1m7ya_ 37 GIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLT 115 (431)
T ss_dssp SBEECSSCCCCSC-HHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEE
T ss_pred cEEEeeccccccc-HHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEEC
Confidence 5999999998763 34444444431110 00 0012346999999999999999999753 34679999999
Q ss_pred CCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC---------
Q 013521 142 DGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--------- 211 (441)
Q Consensus 142 ~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--------- 211 (441)
+|+++++.+ +..+++|||.|++++|+|+.+...+...+. .+++.++++.++++.++.+.
T Consensus 116 ~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g-----------~~~v~v~~~~~~~~~l~~~~~~~~~~~~~ 184 (431)
T d1m7ya_ 116 AGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTG-----------VEIVPIHCTSSNGFQITETALEEAYQEAE 184 (431)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTC-----------CEEEEEECCGGGTSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcC-----------ceeccccccchhcccccHHHhhhhhhhhh
Confidence 999999998 677889999999999999999888775431 58889999887777666331
Q ss_pred --CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccC---------CCcceeE
Q 013521 212 --TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIP---------GAREVAI 279 (441)
Q Consensus 212 --~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~---------~~~~~~i 279 (441)
..++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.+++. +.++.++. +..++++
T Consensus 185 ~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi 264 (431)
T d1m7ya_ 185 KRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVH 264 (431)
T ss_dssp HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEE
T ss_pred hccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEE
Confidence 35788999999999999999999999999999999999999999999888753 44444332 2246899
Q ss_pred EEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHHHH
Q 013521 280 EISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYKEN 357 (441)
Q Consensus 280 ~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~ 357 (441)
+++||||.+|++|+|+||++++++.+ ......... ...++...|.++.+.+.+... +++++.++.++++
T Consensus 265 ~~~s~SK~~~~~G~RiG~~~~~~~~i--------~~~~~~~~~-~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~ 335 (431)
T d1m7ya_ 265 VVYSLSKDLGLPGFRVGAIYSNDDMV--------VAAATKMSS-FGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQR 335 (431)
T ss_dssp EEEESSSSSCCGGGCEEEEEESCHHH--------HHHHHHHGG-GSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcccccCCCCccceeccchhhh--------HHHHHHHhc-cccccccccchhhhhhccchhhhhhhhhhhhhhhhh
Confidence 99999999999999999999998874 223332333 334566666666666654433 5789999999999
Q ss_pred HHHHHHHHHhCCCeeeCCCCceEEEEEcCCC-------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHH
Q 013521 358 AKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREY 429 (441)
Q Consensus 358 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~ 429 (441)
++.+.+.|++.|+++.++.+|+|+|++++.. ++.++++++++++||.+.||+.|+..+++|+||+++. ++++
T Consensus 336 ~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~ 415 (431)
T d1m7ya_ 336 QKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERT 415 (431)
T ss_dssp HHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHH
T ss_pred hhhhhhhhhcCCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHH
Confidence 9999999999999999888999999999621 3456888999999999999999998888999999975 6788
Q ss_pred HHHHHHHHHhhC
Q 013521 430 ISEACRRLKNFL 441 (441)
Q Consensus 430 ~~~~l~~l~~~l 441 (441)
++++++||++++
T Consensus 416 l~~al~rL~~~l 427 (431)
T d1m7ya_ 416 LDLAMQRLKAFV 427 (431)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=3.3e-50 Score=393.11 Aligned_cols=346 Identities=20% Similarity=0.265 Sum_probs=280.7
Q ss_pred CCCeEEeCCCCCCCC--CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHH
Q 013521 71 DARLIRLGIGDTTQP--IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~--~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~ 146 (441)
++++|+|+.|.|+.. +.+.+.+++.+.+.... ....+|++..|.++||++||+|+.+ +.++++++|++|+|+++
T Consensus 28 ~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~ 105 (403)
T d1wsta1 28 TSDVISLAGGLPAPETFPVETIKKIAVEVLEEHA--DKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQ 105 (403)
T ss_dssp SSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSH--HHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHH
T ss_pred CCCcEECCCCCCCccccCHHHHHHHHHHHHHhCc--ccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchH
Confidence 357999999987632 44566777777776532 3456899999999999999999975 56788999999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC---------CCCCCcc
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL---------STTSRTD 216 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---------~~~~~~~ 216 (441)
++.+ +..++++||.|++++|+|+.+...+..+| .+++.++.+.++...... .......
T Consensus 106 al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (403)
T d1wsta1 106 ALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYD------------PEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKI 173 (403)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTC------------CEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHhhcCCccccCCCcchhhhHHHhhcc------------ccceeEeecccCCccccccccchhhhhccccccc
Confidence 9998 57788999999999999999999999998 588888887653322211 1124556
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC-CcccccCCCcceeEEEecCCcccCCcccee
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
++++++||||||.++|.+++++|+++|++||++||+||+|.++.+++.+ .++...+ ..+++++++||||.++ ||+|+
T Consensus 174 ~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~-~G~Ri 251 (403)
T d1wsta1 174 VYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFD-DYGRVIYLGTFSKILA-PGFRI 251 (403)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGC-SSSCEEEEEESTTTTC-GGGCC
T ss_pred cccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccC-CCCcEEEEccccceec-Ccccc
Confidence 6777799999999999999999999999999999999999999887654 3454443 4678999999999996 99999
Q ss_pred EEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhC---CCe
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSL---GLK 371 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~---g~~ 371 (441)
||+++++++ ++.+...........+.+.|.+..+++..... .++++.++.++++++.+.+.|.+. ++.
T Consensus 252 G~~i~~~~~--------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 323 (403)
T d1wsta1 252 GWVAAHPHL--------IRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVE 323 (403)
T ss_dssp EEEEECHHH--------HHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE
T ss_pred cccccchHH--------HHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeE
Confidence 999999888 45666666666666888888877777664444 678999999999999999999875 788
Q ss_pred eeCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCC--CCCCeEEEEee-cCHHHHHHHHHHHHhhC
Q 013521 372 VNGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGP--GGNEHIRVSAF-GHREYISEACRRLKNFL 441 (441)
Q Consensus 372 ~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~iRls~~-~~~~~~~~~l~~l~~~l 441 (441)
+..|.+|+|+|++++. .++..+++.++ ++||.+.||+.|+. .+++++||+++ .+++++++++++|++++
T Consensus 324 ~~~p~gg~~~~~~~~~~~~~~~~~~~l~-~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l 396 (403)
T d1wsta1 324 WTKPEGGMFVRVTLPEGIDTKLMMERAV-AKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETI 396 (403)
T ss_dssp ECCCSBSSEEEEECCTTCCTTTTHHHHH-HTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred EeCCCceeEEEEECCCCCCHHHHHHHHH-HCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 8888899999999984 34555555555 55999999999964 34689999986 48899999999998864
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.2e-50 Score=398.12 Aligned_cols=346 Identities=19% Similarity=0.326 Sum_probs=278.7
Q ss_pred CCCCeEEeCCCCCCCC--CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCC-CCCCcEEEcCCc
Q 013521 70 PDARLIRLGIGDTTQP--IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMG-IEGDEIFISDGA 144 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~--~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~-~~~~~I~~t~G~ 144 (441)
.++++|+|+.|.|+.. +++.+.+++.+.++... ...++|++..|.++||++||+|+.+ ++. +++++|++|+|+
T Consensus 36 ~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~ 113 (420)
T d1vp4a_ 36 ADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEY--HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGS 113 (420)
T ss_dssp TSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSH--HHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHH
T ss_pred CCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCC--ccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccch
Confidence 4568999999988643 44556677777765432 3456899999999999999999976 443 689999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-C----------CCC
Q 013521 145 QSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-L----------STT 212 (441)
Q Consensus 145 ~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~----------~~~ 212 (441)
++++.+ +..+++|||.|++++|+|+.+...++..| .+++.++.+++ ++.++ + ...
T Consensus 114 ~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g------------~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~ 180 (420)
T d1vp4a_ 114 QQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYL------------ANFVVVPLEDD-GMDLNVLERKLSEFDKNGKI 180 (420)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTT------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCG
T ss_pred hhhHHHHHHhhhccccccccccccccchhHHHHHHh------------hhccccccccc-ccccchhhhhhhhhHHHhhc
Confidence 999998 57778999999999999999999999998 58889988765 33222 1 111
Q ss_pred CCcc-EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC-CcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTD-IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~-~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
.+++ ++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++.. .+....+ .++++++++|+||.++
T Consensus 181 ~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~-~~~~~i~~~s~sk~~~- 258 (420)
T d1vp4a_ 181 KQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-GPERVVLLNTFSKVLA- 258 (420)
T ss_dssp GGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-CTTTEEEEEESTTTTC-
T ss_pred cccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccc-cccceeEEeccccccc-
Confidence 2334 4556699999999999999999999999999999999999999887643 3343333 4678899999999985
Q ss_pred ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhC-
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSL- 368 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~- 368 (441)
+|+|+||+++++++ ++.+.........+++.+.|.++...+.+... +++++.++.++++++.+.+.|++.
T Consensus 259 ~G~RiG~~~~~~~~--------i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 330 (420)
T d1vp4a_ 259 PGLRIGMVAGSKEF--------IRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYF 330 (420)
T ss_dssp GGGCEEEEECCHHH--------HHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccchh--------hhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhh
Confidence 99999999999988 46676666666667889999888888875544 678889999999999999888764
Q ss_pred ----CCeeeCCCCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCC--CCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 369 ----GLKVNGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPG--GNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 369 ----g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
|+++..|.+|+|+|++++ +.++.++++.+. ++||.+.||+.|+.. +.++||||++. +++++++++++|+++
T Consensus 331 ~~~~g~~~~~p~gg~f~~~~~~~~~d~~~~~~~l~-~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~~ 409 (420)
T d1vp4a_ 331 SDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAK-RKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREV 409 (420)
T ss_dssp TTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHH-HHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred ccCCCcEEecCCceEEEEEECCCCCCHHHHHHHHH-HCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHHH
Confidence 788888889999999998 445666666554 569999999999754 36799999964 788999999999886
Q ss_pred C
Q 013521 441 L 441 (441)
Q Consensus 441 l 441 (441)
+
T Consensus 410 l 410 (420)
T d1vp4a_ 410 V 410 (420)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=3.4e-47 Score=365.30 Aligned_cols=329 Identities=18% Similarity=0.241 Sum_probs=269.8
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL 151 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l 151 (441)
.++|||+.|.+++++|+.+.+++.+.+.. ...| |+.+..+||+++|+++ ++++++|++|+|+++++.++
T Consensus 22 ~~~idls~~~np~~~p~~~~~a~~~~~~~------~~~Y-p~~~~~~Lr~aia~~~----~v~~~~I~~~~g~~~~~~~~ 90 (355)
T d1lc5a_ 22 DQLLDFSANINPLGMPVSVKRALIDNLDC------IERY-PDADYFHLHQALARHH----QVPASWILAGNGETESIFTV 90 (355)
T ss_dssp GGSEECSSCCCTTCCCHHHHHHHHHTGGG------GGSC-CCTTCHHHHHHHHHHH----TSCGGGEEEESSHHHHHHHH
T ss_pred hheEEccCCCCCCCCCHHHHHHHHHHHHH------hccC-CCCChHHHHHHHHHHh----CCCHHHEEecccHHHHHHHH
Confidence 36899999999999999999999887643 3468 5567799999999997 89999999999999998886
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC----CCCccEEEEcCCCCcc
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST----TSRTDIIFFCSPNNPT 227 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~----~~~~~~v~i~~p~NPt 227 (441)
..++. |+.+++..|.|+.+.......+ ..++.++++.++++.++.+. .+++++++++||||||
T Consensus 91 ~~~~~-~~~~~v~~p~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPt 157 (355)
T d1lc5a_ 91 ASGLK-PRRAMIVTPGFAEYGRALAQSG------------CEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPT 157 (355)
T ss_dssp HHHHC-CSEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTT
T ss_pred Hhhhc-cccccccCCccceecccccccc------------ccceeeeeeccCCccceeeeeeccccccceeeeecccCcc
Confidence 55554 4556677899999988888887 58888888776666555321 5789999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS 307 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~ 307 (441)
|.+++.+++++|+++|++|++++|+||+|.+|.+...... ......+++++++||||.+|+||+|+||++++++.+
T Consensus 158 G~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~--~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~-- 233 (355)
T d1lc5a_ 158 GLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFI--PALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAA-- 233 (355)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSG--GGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHH--
T ss_pred cccchhhhhhhhhhhccccccccccccceeeeeeeccccc--ccccccccceeecccccccccccccccceeccchhh--
Confidence 9999999999999999999999999999999877654322 222345789999999999999999999999998764
Q ss_pred CCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcC
Q 013521 308 NGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFP 386 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 386 (441)
.+.+.... .....+.++|.++.+++++ ..++...++.++++++.+.+.|.++ ++.+. |.+|+|+|++++
T Consensus 234 -----~~~~~~~~--~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~ 303 (355)
T d1lc5a_ 234 -----MARMRRQQ--MPWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCE 303 (355)
T ss_dssp -----HHHHHHHS--CTTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEES
T ss_pred -----hHHHHhhc--CCccccccccccccccccc--cchhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECC
Confidence 34444322 2345788999999999875 4567888899999999999999988 77765 478999999997
Q ss_pred CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 387 GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 387 ~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
. ++.++++.|++ +||.|+||+.|...+++||||++. +++++++++++|+++|
T Consensus 304 ~-~~~~~~~~L~~-~gv~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 304 R-EDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 355 (355)
T ss_dssp C-TTCCHHHHHHT-TTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred C-CHHHHHHHHHH-CCcEEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence 4 45567777765 599999999998777899999984 7899999999999986
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.9e-45 Score=348.49 Aligned_cols=317 Identities=17% Similarity=0.257 Sum_probs=256.2
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
++++|+|++|++++++|+.+.+++.+++.. ...+|.|..|.++||++||+|+.+. ++++++|++|+|+++++.+
T Consensus 18 ~~d~~~l~~~enp~~~p~~i~~~~~~~~~~-----~~~~~yp~~g~~~Lr~aia~~~~~~-~v~~d~I~it~G~~~~l~~ 91 (334)
T d2f8ja1 18 KRDKTYLALNENPFPFPEDLVDEVFRRLNS-----DALRIYYDSPDEELIEKILSYLDTD-FLSKNNVSVGNGADEIIYV 91 (334)
T ss_dssp CCCSEECSSCCCSSCCCHHHHHHHHHHCCT-----TGGGSCCCSSCHHHHHHHHHHHTCS-SCCGGGEEEEEHHHHHHHH
T ss_pred CCCceEEECCCCCCCCCHHHHHHHHHHhhc-----chhcCCCCCCcHHHHHHHHHHhccc-CCCcceEEecCcchhHHHH
Confidence 468999999999999999999999988763 3334447789999999999998653 4789999999999999887
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccC
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHA 230 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~ 230 (441)
+. ++||+|++++|+|+++...+..+| .+++.++++.+..+ .+ ....+++++++||||||||.+
T Consensus 92 l~---~~~d~v~i~~P~y~~~~~~~~~~g------------~~~v~v~~~~~~~~-~~-~~~~~~~~l~l~nP~NPtG~~ 154 (334)
T d2f8ja1 92 MM---LMFDRSVFFPPTYSCYRIFAKAVG------------AKFLEVPLTKDLRI-PE-VNVGEGDVVFIPNPNNPTGHV 154 (334)
T ss_dssp HH---HHSSEEEECSSCCHHHHHHHHHHT------------CCEEECCCCTTSCC-CC-CCCCTTEEEEEESSCTTTCCC
T ss_pred Hh---hhccccccccccccccccchhccC------------Cccccccccccccc-cc-cccccceEEEeccccccccee
Confidence 53 356999999999999999999999 68999999875433 22 234688999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCc
Q 013521 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY 310 (441)
Q Consensus 231 ~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~ 310 (441)
++.++++++ .++++++|+||+|.++........ . ...+++++++||||.++++|+|+||+++|+++
T Consensus 155 ~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~~~~---~-~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~------ 220 (334)
T d2f8ja1 155 FEREEIERI----LKTGAFVALDEAYYEFHGESYVDF---L-KKYENLAVIRTFSKAFSLAAQRVGYVVASEKF------ 220 (334)
T ss_dssp CCHHHHHHH----HTTTCEEEEECTTGGGTCCCCGGG---G-GTCSSEEEEEESTTTSSCTTTCEEEEEECHHH------
T ss_pred ecHHHhhcc----ccceeEEeecccchhhcccccccc---c-ccCceEEEEecCccccchhhhhhhhcccchHH------
Confidence 997766553 468999999999987655432221 1 23578999999999999999999999999888
Q ss_pred hhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCCh
Q 013521 311 PVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSS 390 (441)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (441)
++.+...+. ..+++.++|.++.+.+.+ .+++++.++.++++++.+.+.|+++|+++.++ +|+|+|++++..+.
T Consensus 221 --i~~l~~~~~--~~~~s~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~-~g~f~~~~~~~~~~ 293 (334)
T d2f8ja1 221 --IDAYNRVRL--PFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITDS-RGNFVFVFMEKEEK 293 (334)
T ss_dssp --HHHHHHHSC--TTCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCC-CSSEEEEECCHHHH
T ss_pred --HHHHHHhhc--ccccchhhhhhccccccc--ccchhhHHHHHHHHHHHHHHHHHHCCCeECCC-CceEEEEECCCCCH
Confidence 455655443 345788999988888864 46788899999999999999999999998865 66799999986556
Q ss_pred HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 391 WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 391 ~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
.++++.|++ +||.|++. +++||||++ +.+++++++++|+++
T Consensus 294 ~~~~~~L~~-~GI~vr~~-------~~~vRis~g-~~ee~~~l~~~l~~f 334 (334)
T d2f8ja1 294 ERLLEHLRT-KNVAVRSF-------REGVRITIG-KREENDMILRELEVF 334 (334)
T ss_dssp HHHHHHHHH-TTEECEEE-------TTEEEEECC-CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-CCCEECCC-------CCeEEEEcC-CHHHHHHHHHHHhcC
Confidence 667777665 59999763 479999985 677889999999864
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=4.1e-46 Score=363.39 Aligned_cols=340 Identities=14% Similarity=0.142 Sum_probs=264.2
Q ss_pred CCCCeEEeCCCC---CC--CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhC--CCCCCcEEEcC
Q 013521 70 PDARLIRLGIGD---TT--QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDM--GIEGDEIFISD 142 (441)
Q Consensus 70 ~~~~~i~l~~g~---~~--~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~--~~~~~~I~~t~ 142 (441)
+.++.|||++|. ++ .+..+.+.+++.+.+.+ +..++|++..|.++||+++++|+.+.. .+++++|+++.
T Consensus 26 ~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~ 101 (401)
T d7aata_ 26 TNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK----KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQ 101 (401)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhC----CCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEec
Confidence 345689999994 33 24457888888887764 444589999999999999999997633 34677888776
Q ss_pred CcH-----HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC------
Q 013521 143 GAQ-----SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS------ 210 (441)
Q Consensus 143 G~~-----~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~------ 210 (441)
|+. +++.. +..+++|||+|++++|+|++|...+...| .+++.+++.+++++..+.+
T Consensus 102 ~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (401)
T d7aata_ 102 GISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAG------------LQLQAYRYYDPKTCSLDFTGAMEDI 169 (401)
T ss_dssp EEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEETTTTEECHHHHHHHH
T ss_pred cchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcC------------CeEEEEeccccccccccHHHHHHHH
Confidence 654 34554 46778999999999999999999999999 5999999877766655532
Q ss_pred --CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC-c--ccccCCCcceeEEEecCC
Q 013521 211 --TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR-S--IYEIPGAREVAIEISSFS 285 (441)
Q Consensus 211 --~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~-~--~~~~~~~~~~~i~i~S~S 285 (441)
..++++++++++||||||.++|.+++++|+++|++|+++||+||+|.++.+++.+. + ........++++++.|+|
T Consensus 170 ~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 249 (401)
T d7aata_ 170 SKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYA 249 (401)
T ss_dssp TTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECT
T ss_pred hcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEecc
Confidence 14678899999999999999999999999999999999999999999999876421 1 122222346678999999
Q ss_pred cccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHH
Q 013521 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-----QALRTVIDYYKENAKI 360 (441)
Q Consensus 286 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~ 360 (441)
|.++++|+|+||++++...+.. ..+....+.......+.+++.+.|.++...+.+... .+++.+++.|+++++.
T Consensus 250 k~~~~~G~RiG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 328 (401)
T d7aata_ 250 KNMGLYGERAGAFTVICRDAEE-AKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQ 328 (401)
T ss_dssp TTSCCGGGCEEEEEEECSSHHH-HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeeccccceeecchHHHHH-HHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887411 000011122223344556788889888888875432 4678888999999999
Q ss_pred HHHHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHH
Q 013521 361 IVDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACR 435 (441)
Q Consensus 361 l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~ 435 (441)
+.+.|++++ +.+.++++|+|+|+.++ .+++++|++++||.+.|| +|||++. ++++++.+.+
T Consensus 329 l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls----~e~~~~L~~e~gV~~~pg----------~Ris~a~~~~~~i~~la~ 394 (401)
T d7aata_ 329 LVSNLKKEGSSHNWQHITDQIGMFCFTGLK----PEQVERLTKEFSIYMTKD----------GRISVAGVASSNVGYLAH 394 (401)
T ss_dssp HHHHHHHTTCCSCCHHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHH
T ss_pred HHHHHHHhCCCCCcceECCCCeEEEecCCC----HHHHHHHHHhCCEEECCC----------cEEEeccCCHHHHHHHHH
Confidence 999999884 44566789999998763 577899999999999997 3999864 8888999999
Q ss_pred HHHhh
Q 013521 436 RLKNF 440 (441)
Q Consensus 436 ~l~~~ 440 (441)
+|.++
T Consensus 395 ai~~v 399 (401)
T d7aata_ 395 AIHQV 399 (401)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-44 Score=344.13 Aligned_cols=319 Identities=20% Similarity=0.309 Sum_probs=253.4
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.+.|.|+.|++++++++.+.+ ..+.+| |+.+..+||+++|+|+ ++++|+|++|+|+++++.+
T Consensus 26 ~~~~i~L~~ne~p~~~~~~~~~------------~~l~rY-Pd~~~~~Lr~~ia~~~----gv~pe~I~it~Gs~eai~~ 88 (354)
T d1fg7a_ 26 GNGDVWLNANEYPTAVEFQLTQ------------QTLNRY-PECQPKAVIENYAQYA----GVKPEQVLVSRGADEGIEL 88 (354)
T ss_dssp TTCSEECSSCCCSSCCCCCCCC------------CCTTSC-CCSSCHHHHHHHHHHH----TSCGGGEEEESHHHHHHHH
T ss_pred CCCCEEeeCCCCCCCCCHHHHH------------HHHhcC-CCCcHHHHHHHHHHHh----CCChHHeeeccCchHHHHH
Confidence 3567999999987766553211 344578 5667789999999997 8999999999999999998
Q ss_pred -HHHhcCCCC-EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC----CCCCccEEEEcCCC
Q 013521 151 -LQMLLGSNV-TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS----TTSRTDIIFFCSPN 224 (441)
Q Consensus 151 -l~~l~~~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~----~~~~~~~v~i~~p~ 224 (441)
+..+++||| .|+++.|+|+.+...+...| .+++.++.++ ++.+|++ ...+++++++|+||
T Consensus 89 ~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g------------~~v~~~~~~~--~~~~d~~~l~~~~~~~~~v~~~~pn 154 (354)
T d1fg7a_ 89 LIRAFCEPGKDAILYCPPTYGMYSVSAETIG------------VECRTVPTLD--NWQLDLQGISDKLDGVKVVYVCSPN 154 (354)
T ss_dssp HHHHHCCTTTCEEEECSSSCTHHHHHHHHHT------------CEEEECCCCT--TSCCCHHHHHTSCTTEEEEEEESSC
T ss_pred HHHHhhccccccccccccccccchhhhhccC------------ceeecccccc--ccccchhhhhhcccccceeeccCCC
Confidence 577889998 68889999999999999999 5888888754 4555533 24689999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.+++.++++.+.+.++ ++.++|+||+|.+|..+...... ....+++++++||||.||++|+|+||+++++++
T Consensus 155 NPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~~~---~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~ 230 (354)
T d1fg7a_ 155 NPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGW---LAEYPHLAILRTLSKAFALAGLRCGFTLANEEV 230 (354)
T ss_dssp TTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGG---TTTCTTEEEEEESSSTTCCGGGCCEEEEECHHH
T ss_pred ccceeEeeeccccccccccc-ccccccccccchhhccccccchh---hcccccceEEeCCccccCCCccccccccccchh
Confidence 99999999999999888776 57788888888888765433222 234577899999999999999999999999888
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCceEEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-LKVNGGKNAPYVWV 383 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~ 383 (441)
++.+.+... ...++.+.|.++.+++.+....+.....+.+.++++.+.+.|.+++ +....+++++|+|+
T Consensus 231 --------i~~l~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~ 300 (354)
T d1fg7a_ 231 --------INLLMKVIA--PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILA 300 (354)
T ss_dssp --------HHHHHHHSC--SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEE
T ss_pred --------hhhhhhhcC--ccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEE
Confidence 455654433 3446777888777777765556677777888999999999999884 44555679999999
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
+++ ++.++++.|+++ ||.|++++.|.. .++|+|||+ .+++++++++++|+.
T Consensus 301 ~~~--~~~~~~~~L~~~-gIlvr~~~~~~~-~~~~lRisi-gt~ee~~~~l~aLka 351 (354)
T d1fg7a_ 301 RFK--ASSAVFKSLWDQ-GIILRDQNKQPS-LSGCLRITV-GTREESQRVIDALRA 351 (354)
T ss_dssp EET--THHHHHHHHHHT-TEECEECTTSTT-CTTEEEEEC-CCHHHHHHHHHHHHT
T ss_pred eCC--CHHHHHHHHHHC-CcEEecCCCCCC-CCCEEEEEe-CCHHHHHHHHHHHhh
Confidence 997 566777777655 999999987743 468999998 477888999999873
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=359.14 Aligned_cols=341 Identities=16% Similarity=0.151 Sum_probs=261.7
Q ss_pred CCCeEEeCCCC---CC--CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCC
Q 013521 71 DARLIRLGIGD---TT--QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDG 143 (441)
Q Consensus 71 ~~~~i~l~~g~---~~--~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G 143 (441)
.++.|||++|. ++ .|.++.+.+|......+ ....++|+|..|.++||+++|+|+.+ +..+++++|+++.|
T Consensus 25 ~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~---~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~ 101 (397)
T d3tata_ 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQ---PHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQT 101 (397)
T ss_dssp CSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTS---CCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCB
T ss_pred CCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhC---cccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecC
Confidence 34569999994 33 23457777776554322 14566899999999999999999976 33357889999888
Q ss_pred cHHH----HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC--------
Q 013521 144 AQSD----ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS-------- 210 (441)
Q Consensus 144 ~~~a----l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~-------- 210 (441)
++++ +.+ +..+++|||+|++++|+|+++...++.+| .+++.++++.++++..+.+
T Consensus 102 ~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G------------~~~~~v~~~~~~~~~~~~~~~~~~~~~ 169 (397)
T d3tata_ 102 LGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAG------------FEVSTYPWYDEATNGVRFNDLLATLKT 169 (397)
T ss_dssp SHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTT------------CCCEECCCCCTTTSSCCHHHHHHHHTT
T ss_pred chhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcC------------CEEEEEecchhhccccchHHHHHHhhh
Confidence 8765 333 34567999999999999999999999999 5899999988877665532
Q ss_pred CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCcccccCCCcceeEEEecCCccc
Q 013521 211 TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYEIPGAREVAIEISSFSKFA 288 (441)
Q Consensus 211 ~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~ 288 (441)
..+++++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.++.......++++++.||||.+
T Consensus 170 ~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 249 (397)
T d3tata_ 170 LPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF 249 (397)
T ss_dssp CCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHH
T ss_pred cccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccc
Confidence 135778888899999999999999999999999999999999999999988743 223333333457789999999999
Q ss_pred CCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHHHHH
Q 013521 289 GFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-----QALRTVIDYYKENAKIIVD 363 (441)
Q Consensus 289 ~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~ 363 (441)
+++|+|+||++++...+.. ..+............+.+++...|.++...+.+... ++++.++++++++++.+.+
T Consensus 250 ~~~G~RiG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 328 (397)
T d3tata_ 250 SLYGERVGGLSVMCEDAEA-AGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVK 328 (397)
T ss_dssp TBTTTCCBCCEEECSSTTH-HHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccccccccchhHHHH-HHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887421 000011111222334455677888877777765432 4567778888889999999
Q ss_pred HHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHH
Q 013521 364 AFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLK 438 (441)
Q Consensus 364 ~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~ 438 (441)
.|..++ +.+.++.+|+|+|+.++ .+++++|++++||.+.||. ||++++ ++++++.+.++|.
T Consensus 329 ~L~~~~~~~~~~~~~~~~G~F~~~~ls----~e~~~~L~~e~~V~l~~g~----------Ri~~a~~~~~~i~~~~~ai~ 394 (397)
T d3tata_ 329 VLSTEMPERNFDYLLNQRGMFSYTGLS----AAQVDRLREEFGVYLIASG----------RMCVAGLNTANVQRVAKAFA 394 (397)
T ss_dssp TTTTTCTTSCTTHHHHCCSSBCCCCCC----HHHHHHHTTTTCEECCSSS----------CCBTTSCCTTTHHHHHHHHH
T ss_pred HHHHhCCCCceEEEcCCCceEEecCcC----HHHHHHHHHhCCEEeCCCC----------EEEeccCCHHHHHHHHHHHH
Confidence 988762 56667789999998874 5778999999999999973 899855 8889999999998
Q ss_pred hhC
Q 013521 439 NFL 441 (441)
Q Consensus 439 ~~l 441 (441)
+++
T Consensus 395 ~v~ 397 (397)
T d3tata_ 395 AVM 397 (397)
T ss_dssp HHC
T ss_pred HhC
Confidence 875
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-43 Score=344.09 Aligned_cols=339 Identities=17% Similarity=0.213 Sum_probs=258.9
Q ss_pred CCeEEeCCC---CCC--CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCc--EEEcC
Q 013521 72 ARLIRLGIG---DTT--QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDE--IFISD 142 (441)
Q Consensus 72 ~~~i~l~~g---~~~--~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~--I~~t~ 142 (441)
++.|||++| +++ .+.++.+.+++.+.+.+ +..++|++..|.++||+++|+|+.+..+ ..++. +++|.
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~----~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~ 101 (396)
T d2q7wa1 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN----ETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTP 101 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred CCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhC----CCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccc
Confidence 456999999 333 34568888998888765 4556899999999999999999976433 23443 44566
Q ss_pred CcHHHHHH---HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC--------CC
Q 013521 143 GAQSDISR---LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL--------ST 211 (441)
Q Consensus 143 G~~~al~~---l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~--------~~ 211 (441)
|+..++.+ +...+++||.|++++|+|++|..++...| .+++.++...++++..+. ..
T Consensus 102 ~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (396)
T d2q7wa1 102 GGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAG------------LEVREYAYYDAENHTLDFDALINSLNEA 169 (396)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTT------------CEEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcC------------CeeEecccccccccccccchHHHHHHHh
Confidence 66666654 24456999999999999999999999999 588999987776654332 12
Q ss_pred CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCcccccCCCcceeEEEecCCcccC
Q 013521 212 TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 212 ~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
.++++++++++||||||.++|.+++++|+++|++|+++||+||+|.++.+++. +.+.....+..++++++.|+||.++
T Consensus 170 ~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~ 249 (396)
T d2q7wa1 170 QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFG 249 (396)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT
T ss_pred ccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccccc
Confidence 46778888899999999999999999999999999999999999999988753 2222222223466789999999999
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYYKENAKIIVDA 364 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~ 364 (441)
++|+|+||++++...+.. ..+............+.+++...|.++.+++.+.. .++++.+++.++++++.+.+.
T Consensus 250 ~~G~R~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 328 (396)
T d2q7wa1 250 LYNERVGACTLVAADSET-VDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNT 328 (396)
T ss_dssp CGGGCCEEEEEECSSHHH-HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred ccCCCccccccchhHHHH-HHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887411 00000111112234456678888888888887532 257888999999999999999
Q ss_pred HHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHh
Q 013521 365 FQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKN 439 (441)
Q Consensus 365 L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~ 439 (441)
|++++ +.+..+++|+|.|+.++ .+++++|++++||.+.||+ ||++++ ++++++.++++|.+
T Consensus 329 L~~~~~~~~~~~~~~~~G~F~~~~l~----~e~~~~L~~e~gV~~~~g~----------Ri~~a~l~~~~i~~~~~ai~~ 394 (396)
T d2q7wa1 329 LQEKGANRDFSFIIKQNGMFSFSGLT----KEQVLRLREEFGVYAVASG----------RVNVAGMTPDNMAPLCEAIVA 394 (396)
T ss_dssp HHHTTCCSCCTHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTTC----------EEEGGGCCTTTHHHHHHHHHH
T ss_pred HHHhCCCCCcceecCCCeEEEeeCCC----HHHHHHHHHhCCEEECCCC----------EEEecCCCHHHHHHHHHHHHH
Confidence 99985 44456679999998774 4778999999999998874 999865 88899999999988
Q ss_pred hC
Q 013521 440 FL 441 (441)
Q Consensus 440 ~l 441 (441)
++
T Consensus 395 v~ 396 (396)
T d2q7wa1 395 VL 396 (396)
T ss_dssp HC
T ss_pred hC
Confidence 75
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=3e-43 Score=343.92 Aligned_cols=341 Identities=14% Similarity=0.152 Sum_probs=252.9
Q ss_pred CCCeEEeCCCC---CCC--CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEEc--
Q 013521 71 DARLIRLGIGD---TTQ--PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFIS-- 141 (441)
Q Consensus 71 ~~~~i~l~~g~---~~~--~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~t-- 141 (441)
.++.|||++|. ++. +.++.+.++.+....+ ....++|+|..|.++||+++++++.+..+ +.++.++.+
T Consensus 28 ~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~---~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~ 104 (412)
T d1yaaa_ 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND---SSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQS 104 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTC---TTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhC---cccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEec
Confidence 45679999993 333 3446777765544322 14456799999999999999999976333 233443333
Q ss_pred CCcHHHHHH---HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-------
Q 013521 142 DGAQSDISR---LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------- 211 (441)
Q Consensus 142 ~G~~~al~~---l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------- 211 (441)
.|+..++.+ +...++|||.|++++|+|+.|...+...| .+++.++...++++..+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (412)
T d1yaaa_ 105 LSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQG------------LKTATYPYWANETKSLDLNGFLNAIQK 172 (412)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTT------------CCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcC------------Cceecccccccccccccchhhhccccc
Confidence 333333332 23456899999999999999999999999 58888888766666555321
Q ss_pred -CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC-Cc-----ccccCCCcceeEEEecC
Q 013521 212 -TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RS-----IYEIPGAREVAIEISSF 284 (441)
Q Consensus 212 -~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~-~~-----~~~~~~~~~~~i~i~S~ 284 (441)
.++++++++++||||||.++|.+++++|+++|++++++||+||+|.++.+++.. .+ ........++++++.|+
T Consensus 173 ~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 252 (412)
T d1yaaa_ 173 APEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF 252 (412)
T ss_dssp SCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEEC
T ss_pred CCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEec
Confidence 356678888899999999999999999999999999999999999999987631 11 11223345788999999
Q ss_pred CcccCCccceeEEEEeeccccccCCc---hhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-----HHHHHHHHHHHH
Q 013521 285 SKFAGFTGVRLGWTVVPEELRYSNGY---PVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-----QALRTVIDYYKE 356 (441)
Q Consensus 285 SK~~~~~G~r~G~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~ 356 (441)
||.++++|+|+||++++.+.+..... .............+.+++.+.|.++..++.+... ++++.+++.+++
T Consensus 253 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (412)
T d1yaaa_ 253 AKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITK 332 (412)
T ss_dssp TTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887521000 0011111223345667889999999888886432 567889999999
Q ss_pred HHHHHHHHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHH
Q 013521 357 NAKIIVDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYIS 431 (441)
Q Consensus 357 ~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~ 431 (441)
+++.+.+.|+++| +.+..+++|+|+|+.+ +.+++++|++++||.+.||. ||++++ ++++++
T Consensus 333 ~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~l----s~e~~~~L~~e~~V~~~~g~----------Ris~~g~~~~~i~ 398 (412)
T d1yaaa_ 333 MRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL----TPQMVKRLEETHAVYLVASG----------RASIAGLNQGNVE 398 (412)
T ss_dssp HHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC----CHHHHHHHHHHHCEECCTTS----------EEEGGGCCTTTHH
T ss_pred HHHHHHHHHHHhCCCCCCceeCCCceEEEecCc----CHHHHHHHHHhCCEEECCCC----------EEEeccCCHHHHH
Confidence 9999999999875 4556678999999876 35788999999999998863 999864 777788
Q ss_pred HHHHHHHhh
Q 013521 432 EACRRLKNF 440 (441)
Q Consensus 432 ~~l~~l~~~ 440 (441)
.+.++|.++
T Consensus 399 ~l~~ai~~v 407 (412)
T d1yaaa_ 399 YVAKAIDEV 407 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777765
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=2.9e-43 Score=344.34 Aligned_cols=343 Identities=16% Similarity=0.154 Sum_probs=251.1
Q ss_pred CCCCCeEEeCCCC---CC--CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhC--CCCCCcEE--
Q 013521 69 HPDARLIRLGIGD---TT--QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDM--GIEGDEIF-- 139 (441)
Q Consensus 69 ~~~~~~i~l~~g~---~~--~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~--~~~~~~I~-- 139 (441)
.+.++.|||++|. ++ .+..+.+.++......+ ....++|+|..|.++||+++++|+.+.. .+++++++
T Consensus 27 d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~---~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~ 103 (412)
T d1ajsa_ 27 DPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN---SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGV 103 (412)
T ss_dssp CCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC---TTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhC---CCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceee
Confidence 3445679999993 33 33456777766654432 1445679999999999999999997532 34455544
Q ss_pred EcCCcHHHHHH-H-------HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEE-eecCCCCCccCCCC
Q 013521 140 ISDGAQSDISR-L-------QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVY-MNCRPENNFFPDLS 210 (441)
Q Consensus 140 ~t~G~~~al~~-l-------~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~-v~~~~~~~~~~~~~ 210 (441)
.|+|.+.++.. . ..+++|||+|++++|+|++|..+++..|. +.+. .+..+++.+..+.+
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~------------~~v~~~~~~~~~~~~~d~~ 171 (412)
T d1ajsa_ 104 QSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGF------------KDIRSYRYWDTEKRGLDLQ 171 (412)
T ss_dssp EEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTC------------SCEEEEECEETTTTEECHH
T ss_pred cccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCC------------eEEEeecccccccccccHH
Confidence 45555544432 1 22369999999999999999999999994 4333 33333344444422
Q ss_pred --------CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC---CCcccccCCCcceeE
Q 013521 211 --------TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS---PRSIYEIPGAREVAI 279 (441)
Q Consensus 211 --------~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~---~~~~~~~~~~~~~~i 279 (441)
..++++++++|+||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.+........++++
T Consensus 172 ~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (412)
T d1ajsa_ 172 GFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELF 251 (412)
T ss_dssp HHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEE
T ss_pred HHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhccccc
Confidence 146788889999999999999999999999999999999999999999988763 122222222346789
Q ss_pred EEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHH
Q 013521 280 EISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYY 354 (441)
Q Consensus 280 ~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~ 354 (441)
++.|+||.++++|+|+||++++...... ..+....+.......+.+++.+.|.++..++.+.. .++++.+++.+
T Consensus 252 ~~~s~sk~~~~~G~R~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (412)
T d1ajsa_ 252 CAQSFSKNFGLYNERVGNLTVVAKEPDS-ILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRI 330 (412)
T ss_dssp EEEECTTTSCCGGGCEEEEEEECSSHHH-HHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCccccccchhHHHH-HHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876411 00111122223344556678888888887776432 25678889999
Q ss_pred HHHHHHHHHHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHH
Q 013521 355 KENAKIIVDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREY 429 (441)
Q Consensus 355 ~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~ 429 (441)
+++++.+.+.|++++ +.+..+++|+|.|+.+ +.+++.+|++++||.+.||. ||++++ ++++
T Consensus 331 ~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~l----s~~~v~~L~~e~gV~~vpg~----------Ri~~ag~~~~~ 396 (412)
T d1ajsa_ 331 LSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL----NPKQVEYLINQKHIYLLPSG----------RINMCGLTTKN 396 (412)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC----CHHHHHHHHHTTCEECCTTS----------EEEGGGCCTTT
T ss_pred HHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCC----CHHHHHHHHHhCCEEEeCCC----------eEEeccCCHHH
Confidence 999999999999885 3445667999999766 35778899999999999974 999864 8888
Q ss_pred HHHHHHHHHhhC
Q 013521 430 ISEACRRLKNFL 441 (441)
Q Consensus 430 ~~~~l~~l~~~l 441 (441)
++.++++|.+++
T Consensus 397 i~~~a~aI~~av 408 (412)
T d1ajsa_ 397 LDYVATSIHEAV 408 (412)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888763
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=7.3e-42 Score=332.59 Aligned_cols=340 Identities=15% Similarity=0.148 Sum_probs=252.6
Q ss_pred CCCCeEEeCCCC---CC--CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-hCCCCCCcEEEcCC
Q 013521 70 PDARLIRLGIGD---TT--QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-DMGIEGDEIFISDG 143 (441)
Q Consensus 70 ~~~~~i~l~~g~---~~--~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~~~I~~t~G 143 (441)
+.++.|||++|. ++ .++++.+.+++.+.+.+ ...++|+|..|.++||+++++++.+ +........++|.|
T Consensus 24 ~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~----~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~ 99 (394)
T d2ay1a_ 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET----ETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVG 99 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEH
T ss_pred CCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhC----CCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccC
Confidence 345689999994 22 34568889998888765 4446899999999999999999975 32223344445555
Q ss_pred cHHH--HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC--------CC
Q 013521 144 AQSD--ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS--------TT 212 (441)
Q Consensus 144 ~~~a--l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~--------~~ 212 (441)
++++ +.+ +..++++||.|++++|+|+.|...++.+| .+++.++...++.+..+.. ..
T Consensus 100 ~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (394)
T d2ay1a_ 100 GTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMG------------LPVQTYRYFDAETRGVDFEGMKADLAAAK 167 (394)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHT------------CCEEEEECEETTTTEECHHHHHHHHHTCC
T ss_pred chHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcC------------CEEEEecccchhcccccchhHHHHHhhcc
Confidence 5444 444 45667999999999999999999999999 5888888866554433311 13
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC-Cccccc-CCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSP-RSIYEI-PGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~-~~~~~~-~~~~~~~i~i~S~SK~~~~ 290 (441)
++++++++++||||||.++|.+++++|+++|++|+++||+||+|.++.+++.. .+.... .....+++++.|+||.+++
T Consensus 168 ~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~ 247 (394)
T d2ay1a_ 168 KGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGI 247 (394)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTC
T ss_pred cCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccC
Confidence 55677777899999999999999999999999999999999999999887532 122111 1123457899999999999
Q ss_pred ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-----QALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~L 365 (441)
+|+|+||++++...+.. ..+............+.+++...|..+...+.+..+ ++++.++++++++++.+.+.|
T Consensus 248 ~G~R~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L 326 (394)
T d2ay1a_ 248 YRERTGCLLALCADAAT-RELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGEL 326 (394)
T ss_dssp GGGCEEEEEEECSSHHH-HHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhchhHHHH-HHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877411 000011112222334445667777777766664432 567788999999999999999
Q ss_pred HhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 366 QSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 366 ~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
++++ +.+..+++|+|+|+.++ .+++++|++++||.+.||. ||++++ ++++++.+.++|.++
T Consensus 327 ~~~~~~~~~~~~~~~~G~F~~~~ls----~~~~~~L~~~~~V~~~~g~----------Ri~~a~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 327 RDLSGSDRFGFVAEHRGMFSRLGAT----PEQVKRIKEEFGIYMVGDS----------RINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHHTSSTTTHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTTC----------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred HHhCCCCceeeECCCceeEEecCcC----HHHHHHHHHhCCEEecCCC----------EEEecCCCHHHHHHHHHHHHHh
Confidence 8862 55667789999998773 5788999999999999863 999865 888889888888764
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=4.1e-40 Score=319.28 Aligned_cols=326 Identities=17% Similarity=0.176 Sum_probs=238.7
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCc----CcHHHHHHHHHHHhh-h-CCCCCCcEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQ----GNMALRTAIADKFYK-D-MGIEGDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~----g~~~lr~~ia~~l~~-~-~~~~~~~I~~t~G~~~ 146 (441)
-++|++.|+|.+..|-+...+-..++-..+ -+.++|.... -.++|+++|+++... + ...+..+|++++|+++
T Consensus 57 ~~~~~~~gdp~~~~~~w~~~~~~~~~~~~~--~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gste 134 (425)
T d2hoxa1 57 CSADVASGDGLFLEEYWKQHKEASAVLVSP--WHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQ 134 (425)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECT--TTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHH
T ss_pred ceeeCCCCCCCCCCHHHHhCcccceEEeec--ccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHH
Confidence 479999999987544343333333322111 1233454332 238999999998754 3 2245567999999999
Q ss_pred HHHH-HHHh--------cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccE
Q 013521 147 DISR-LQML--------LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDI 217 (441)
Q Consensus 147 al~~-l~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~ 217 (441)
+|++ +.+| ++|||+|+++.|+|+.|....+.++. +...+..|.+ .+.. ...+++++
T Consensus 135 li~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~------------~~~~~~~D~~-~~~~--~~~~~~~i 199 (425)
T d2hoxa1 135 LIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDK------------KGYVWAGNAA-NYVN--VSNPEQYI 199 (425)
T ss_dssp HHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCB------------TTEEEEEEGG-GGTT--CSCGGGEE
T ss_pred HHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCC------------CCCccCCCHH-HHHh--hCCCCceE
Confidence 9997 6666 57999999999999999999988883 3344444432 2211 12368899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+++||||||||.+.. +..+++.+|.||+|.+..+. ++ ....+++|+++||||.+|++|+|+||
T Consensus 200 i~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~----~~---~~~~~~~Ivl~S~SK~fglaGlRiGw 262 (425)
T d2hoxa1 200 EMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYT----PI---KYKADEDILLFTMSKFTGHSGSRFGW 262 (425)
T ss_dssp EEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTS----CC---CSCBCCSEEEEEHHHHTSCGGGCCEE
T ss_pred EEEECCCCCCcchhh----------hhhhCCEEEEeccccCcccc----ch---hhhcCCeEEEEeCHHhccCcchheee
Confidence 999999999998743 22468999999999753332 22 22356789999999999999999999
Q ss_pred EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHHHHHHHHHHHh
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD----------GFQALRTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~~l~~~L~~ 367 (441)
++++++.+ .+.+..+......+++.++|.++.+++++. ..+.++..++.++++++.+.+.|.+
T Consensus 263 ~i~~~~~i-------~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~ 335 (425)
T d2hoxa1 263 ALIKDESV-------YNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ 335 (425)
T ss_dssp EEECCHHH-------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCHHH-------HHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98887765 566777777777789999999998888531 1245677889999999999999987
Q ss_pred CCC-ee--------------eCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHH
Q 013521 368 LGL-KV--------------NGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISE 432 (441)
Q Consensus 368 ~g~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~ 432 (441)
.+. .+ ..++.+.|+|+++.. ++.+++.++++++||.++||+.|+. ++++||||+..+++++++
T Consensus 336 ~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~-~~~~~~~~lL~e~gI~v~pGs~FG~-~~~yvRisl~~~~e~ld~ 413 (425)
T d2hoxa1 336 SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIKTQDDFDQ 413 (425)
T ss_dssp SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSSCHHHHHH
T ss_pred cCCceeeccCCccceeeeeeccCCCcceeeeeCCC-ChHHHHHHHHHhCCEEEEechhcCC-CCCEEEEEecCCHHHHHH
Confidence 642 11 123456689999864 2334566777888999999999974 578999999889999999
Q ss_pred HHHHHHhhC
Q 013521 433 ACRRLKNFL 441 (441)
Q Consensus 433 ~l~~l~~~l 441 (441)
++++|++++
T Consensus 414 ~l~rL~~~v 422 (425)
T d2hoxa1 414 LMYYLKDMV 422 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=5.2e-28 Score=231.43 Aligned_cols=301 Identities=15% Similarity=0.132 Sum_probs=202.7
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
...++++.....+++.++...+++... +++..+..++++..++++. +.+.+++++|+|+++|+..
T Consensus 19 ~~~i~~~~gl~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~---~~~~e~~~~~~~~~~a~~~ 83 (366)
T d2aeua1 19 RDALYDLSGLSGGFLIDEKDKALLNTY------------IGSSYFAEKVNEYGLKHLG---GDENDKCVGFNRTSSAILA 83 (366)
T ss_dssp GGGCEECSSCCCCCCCCHHHHHHHTST------------THHHHHHHHHHHHHHHHHT---CCTTEEEEEESSHHHHHHH
T ss_pred cchHhhhccCCCCCCccHHHHHHHHHh------------cCchhhHHHHHHHHHHHcc---CCCccEEEEeCCHHHHHHH
Confidence 345788887766666666555444221 2234467788888888773 3456799999999999987
Q ss_pred -HHHhcCCCCEEE-E-eCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCC
Q 013521 151 -LQMLLGSNVTVA-V-QDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNN 225 (441)
Q Consensus 151 -l~~l~~~gd~Vl-v-~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~N 225 (441)
+.++ .+||.|+ + +.|+|+.+...++..| .+++ +.++ ..+++. .+++++|++++|+|
T Consensus 84 ~l~al-~~~~~vi~~~~~~~~~~~~~~~~l~g------------~~~v--~~~d----~e~l~~~i~~~tk~i~~~~p~n 144 (366)
T d2aeua1 84 TILAL-KPKKVIHYLPELPGHPSIERSCKIVN------------AKYF--ESDK----VGEILNKIDKDTLVIITGSTMD 144 (366)
T ss_dssp HHHHH-CCSEEEEECSSSSCCTHHHHHHHHTT------------CEEE--EESC----HHHHHTTCCTTEEEEEECBCTT
T ss_pred HHHHh-CCCCEEEEecCCCcchhHHHHHHhcC------------CeEE--CCCC----HHHHHHhcCCCceEEEEEecCC
Confidence 5555 5565554 4 4689999999999888 3433 3321 112222 47899999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
|+ +++.+++++|+++|++||+++|+||+|+...++.. ..+.... +..+++.|+||.+ +|+|+||+++++++
T Consensus 145 ~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~----~~di~~~S~sK~~--~g~~~G~i~~~~~~ 216 (366)
T d2aeua1 145 LK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL----GADLVVTSTDKLM--EGPRGGLLAGKKEL 216 (366)
T ss_dssp SC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH----TCSEEEEETTSSS--SSCSCEEEEEEHHH
T ss_pred CC--cCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhc----CceEEEecccccc--cccceeEEEecHHH
Confidence 86 46888999999999999999999999987655422 1222222 2348899999976 58999999999988
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-------HHHHHHHHhC-CC--eeeC
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENA-------KIIVDAFQSL-GL--KVNG 374 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~-------~~l~~~L~~~-g~--~~~~ 374 (441)
++.+.........+++++.|.++.+.++.... .++.++++..+ +.+...+... ++ ....
T Consensus 217 --------i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~---~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 285 (366)
T d2aeua1 217 --------VDKIYIEGTKFGLEAQPPLLAGIYRALKNFNL---ERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYE 285 (366)
T ss_dssp --------HHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCH---HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEE
T ss_pred --------HHHHHHHHhcccccCCHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHhhhhccccccccccCcccc
Confidence 45666666555566788888887777753222 22222222222 2222222221 22 2223
Q ss_pred CCCceEEEEEcCCC------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec
Q 013521 375 GKNAPYVWVQFPGS------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG 425 (441)
Q Consensus 375 ~~~~~~~~~~~~~~------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~ 425 (441)
+..+.++|...... ++.+++..|++++||.+.||..| +.+++++||+++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~-p~~~~~lRis~~~ 341 (366)
T d2aeua1 286 RTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM-PGASKSLRIDLTS 341 (366)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS-CSSCCSEEEETTS
T ss_pred cCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCC-CCCCCEEEEeccc
Confidence 34567777776532 35578889999999999999887 4578899999864
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.95 E-value=9.5e-27 Score=224.22 Aligned_cols=335 Identities=16% Similarity=0.125 Sum_probs=215.6
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcC----cHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQG----NMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
.+.|+.+... +.|..+.+++.+.+..... .+...+..... ..++|+.+|++ +++++++|++|+|+|++++
T Consensus 8 ~~yld~~~~~-~~p~~v~ea~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~la~~----~~~~~~~i~~~~g~t~a~~ 81 (381)
T d1elua_ 8 KTYFNFGGQG-ILPTVALEAITAMYGYLQE-NGPFSIAANQHIQQLIAQLRQALAET----FNVDPNTITITDNVTTGCD 81 (381)
T ss_dssp SEECCTTTCC-CCCHHHHHHHHHHHHHHHH-HCSSSHHHHHHHHHHHHHHHHHHHHH----TTSCGGGEEEESSHHHHHH
T ss_pred CEEeeCCccc-CCCHHHHHHHHHHHHHhhc-CCCccchhhHHHHHHHHHHHHHHHHH----hCCCcccEEEECChHHHhh
Confidence 4667766543 5677888999998865432 11112211112 33466666766 4899999999999999999
Q ss_pred H-HHHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC---CCC--CCCccEEEEcC
Q 013521 150 R-LQML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD---LST--TSRTDIIFFCS 222 (441)
Q Consensus 150 ~-l~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~---~~~--~~~~~~v~i~~ 222 (441)
+ +..+ +++||.|++.++.|++....+..+..+.. .++..++.+........ +++ .++++++++++
T Consensus 82 ~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g--------~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~ 153 (381)
T d1elua_ 82 IVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFG--------ITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSH 153 (381)
T ss_dssp HHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHC--------CEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEES
T ss_pred hcchhhhhcCCceEEEeccccceeeecccccccccc--------ccccccccccccccchHHHHHHhhhccccccccccc
Confidence 8 5555 58999999999999886655544322111 47888887653222111 111 47899999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHc----CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKAN----GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~----~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++||||.++| +++|.++|++| ++++++|.+++.... +..+... +..+++.|++|+++ .+.++|++
T Consensus 154 ~~n~tG~~~~---~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~---~~~~~~~----~~D~~~~s~~K~~~-~p~G~g~l 222 (381)
T d1elua_ 154 LLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL---PLDFSRL----EVDYYAFTGHKWFA-GPAGVGGL 222 (381)
T ss_dssp BCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTB---CCCTTTS----CCSEEEEESSSTTC-CCTTCEEE
T ss_pred ccccccccch---hhHHHHHHhhcccccccccccccccccccc---ccccccc----cccccccccccccc-ccchhhHH
Confidence 9999999999 66778888774 699999999874221 2223222 34599999999997 55678999
Q ss_pred EeeccccccCCchhHH-------------HHH-HHHhhhcCCCcHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHHHHH
Q 013521 299 VVPEELRYSNGYPVIK-------------DFN-RIVCTCFNGASNIVQAGGLACL---SPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 299 ~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~~a~~~~l---~~~~~~~~~~~~~~~~~~~~~l 361 (441)
.++++....-.+.... .+. ........+.+.....+..+++ ...+. .+...++..++++++
T Consensus 223 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~--~~~~~~~~~~~~~~l 300 (381)
T d1elua_ 223 YIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGT--AEERYQAICQRSEFL 300 (381)
T ss_dssp EECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcc--cccchhhhhhHHHHH
Confidence 8877664210000000 000 0001111223333333333333 22222 245567788888999
Q ss_pred HHHHHhC-CCeeeCC--CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHH
Q 013521 362 VDAFQSL-GLKVNGG--KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRR 436 (441)
Q Consensus 362 ~~~L~~~-g~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~ 436 (441)
.+.|+++ |+++..+ +.+.++++.+++....+.+...|+++||.++.. ..+++||+|+ +++.+|++++++.
T Consensus 301 ~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~-----~~~~~lRis~~~~nt~edid~ll~~ 375 (381)
T d1elua_ 301 WRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTI-----ADPDCIRACCHYITDEEEINHLLAR 375 (381)
T ss_dssp HHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEE-----TTTTEEEEECCTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCeEecCCCCccccEEEEEcCCCCCHHHHHHHHHhCCcEEEec-----CCCCEEEEecCCCCCHHHHHHHHHH
Confidence 9999997 7777532 345678888875444444445566779998642 2367999996 4589999999999
Q ss_pred HHhh
Q 013521 437 LKNF 440 (441)
Q Consensus 437 l~~~ 440 (441)
|+++
T Consensus 376 l~e~ 379 (381)
T d1elua_ 376 LADF 379 (381)
T ss_dssp HTTC
T ss_pred HHhh
Confidence 9986
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.94 E-value=4.6e-25 Score=210.41 Aligned_cols=338 Identities=15% Similarity=0.120 Sum_probs=237.7
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+.++++|+.+++ ++...|.+.++..+++++++...... -++...-..+|.+.+|+|+ +. ++.+++.+|.+..
T Consensus 44 ~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~----g~-e~all~~sG~~An 118 (396)
T d2bwna1 44 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH----QK-EAALVFSSAYNAN 118 (396)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT----TC-SEEEEESCHHHHH
T ss_pred CeEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHh----CC-CceeeeecchHHH
Confidence 357999999996 56788999999999999987433222 2333445578899999986 43 4577777777777
Q ss_pred HHHHHHh--cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC--CCCCccEEEEcCC
Q 013521 148 ISRLQML--LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS--TTSRTDIIFFCSP 223 (441)
Q Consensus 148 l~~l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~--~~~~~~~v~i~~p 223 (441)
+.++..+ .+++|.|+.+.-.|.++...++..+ .++..++.++.......+. ...+.++|++..-
T Consensus 119 ~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~------------a~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egv 186 (396)
T d2bwna1 119 DATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNA------------GPKRIFRHNDVAHLRELIAADDPAAPKLIAFESV 186 (396)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSC------------CCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESB
T ss_pred HHHHHHHhcccCCCceeehhhhhhccchhhhccc------------cCceEeecchHHHhhhHHhhhcccCceeEEEEee
Confidence 7777655 5789999999999999999998887 4777776643221110011 1234556666677
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc-cCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE-IPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
.+.+|.+.| +.+|+++|++||+++++||+|+..+.+.....+.. +...++.+|+++||||.+|..| ||+.+++
T Consensus 187 ySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~~ 260 (396)
T d2bwna1 187 YSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASA 260 (396)
T ss_dssp CTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECH
T ss_pred ccCcccccc---cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc---cccchhH
Confidence 889999999 88999999999999999999997666654433433 2223456799999999999888 9999888
Q ss_pred cccccCCchhHHHHHHH-HhhhcCC-CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 303 ELRYSNGYPVIKDFNRI-VCTCFNG-ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
+.+ +.+... ....+.+ .+++...++.+.++-......++.++.++.+.+++.+.|.+.|+.+.. ..++.
T Consensus 261 ~~i--------~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~-~~spI 331 (396)
T d2bwna1 261 RMV--------DAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIID-HGSHI 331 (396)
T ss_dssp HHH--------HHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CSSSC
T ss_pred HHH--------HHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCC-CCCCE
Confidence 773 444332 2223333 333433334444431111223666788888999999999988888764 56777
Q ss_pred EEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 381 VWVQFPG-SSSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
+.+.+.. ....++.+++++++||.+.+..+-. +.+...+||++ .+++++++++++.|+++
T Consensus 332 vpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 332 VPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp EEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 7777753 2234566778877899998765433 44567899998 34899999999999986
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=7.3e-25 Score=211.62 Aligned_cols=330 Identities=16% Similarity=0.157 Sum_probs=210.6
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC------------cCcHHHHHHHHHHHhhhCCCCCCcEEEcC
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE------------QGNMALRTAIADKFYKDMGIEGDEIFISD 142 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~------------~g~~~lr~~ia~~l~~~~~~~~~~I~~t~ 142 (441)
|.|+.+.. .|.++.+.++|.+.+.+.. .|+.+ .-..++|+.+|+++ |+++++|++|+
T Consensus 4 iYlD~aa~-~p~~~~v~ea~~~~~~~~~------~~~np~~~~~~~~~~~~~~~~~~R~~iA~~l----g~~~~~I~~~~ 72 (391)
T d1p3wa_ 4 IYLDYSAT-TPVDPRVAEKMMQFMTMDG------TFGNPASRSHRFGWQAEEAVDIARNQIADLV----GADPREIVFTS 72 (391)
T ss_dssp EECBTTTC-CCCCHHHHHHHHTTTSTTS------CCCCTTCTTSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEES
T ss_pred EEeeCccc-cCCCHHHHHHHHHHHHhcc------ccCCCchhhhHHHHHHHHHHHHHHHHHHHHc----CCCCCcEEEEC
Confidence 56665543 3678999999988765321 12211 11346788888886 89999999999
Q ss_pred CcHHHHHH-HHH----hcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCC
Q 013521 143 GAQSDISR-LQM----LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSR 214 (441)
Q Consensus 143 G~~~al~~-l~~----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~ 214 (441)
|++++++. +.. .+++||+|++.++.|+++...++.+...| .++..++.+.++.++++ +++ .++
T Consensus 73 ~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G---------~~v~~v~~~~~~~~d~~~~~~~i~~~ 143 (391)
T d1p3wa_ 73 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREG---------FEVTYLAPQRNGIIDLKELEAAMRDD 143 (391)
T ss_dssp SHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTT---------CEEEEECCCTTSCCCHHHHHHHCCTT
T ss_pred CHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcC---------CEEEEeCCCCCCeEcHHHHHHhCCCC
Confidence 99999886 433 35899999999999999877666553333 48999998765443221 111 589
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce
Q 013521 215 TDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 215 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
|++|++++++||||.++| +++|+++|++||+++++|.++..... +..+... +..+++.|.+|++|.+|
T Consensus 144 T~lv~is~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~---~~d~~~~----~~D~~~~s~~k~~g~~g-- 211 (391)
T d1p3wa_ 144 TILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL---PIDLSQL----KVDLMSFSGHKIYGPKG-- 211 (391)
T ss_dssp EEEEECCSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTBTTB---CCCTTTS----CCSEEEEESTTTTSCSS--
T ss_pred cEEEEEECCCCCCeeECC---HHHHHHHhccCCcEEEEeeccccCCc---cccchhc----cccccccccccccCCCc--
Confidence 999999999999999999 77899999999999999999874322 2233222 23488899999988665
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVN 373 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 373 (441)
+|+++++++.+....+.... ............+.....+....+. ...+......+++++.++.+.+.|.++ +..+.
T Consensus 212 ~g~~~~~~~~~~~~~~~~~g-g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 289 (391)
T d1p3wa_ 212 IGALYVRRKPRVRIEAQMHG-GGHERGMRSGTLPVHQIVGMGEAYR-IAKEEMATEMERLRGLRNRLWNGIKDIEEVYLN 289 (391)
T ss_dssp CEEEEECBTTBCCCCCSSCS-SCTTTTTSCSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEEC
T ss_pred eEEEEEecchhcccCCcccC-CccccCcccCcchhhhhhhhhhhhh-HHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeec
Confidence 68888877664221110000 0000111122223333322222222 112333445566777777888888776 33332
Q ss_pred C--CC-CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCC-----------------CCeEEEEe--ecCHHHHH
Q 013521 374 G--GK-NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGG-----------------NEHIRVSA--FGHREYIS 431 (441)
Q Consensus 374 ~--~~-~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-----------------~~~iRls~--~~~~~~~~ 431 (441)
. +. ....+.+.+++.....+...+ .++.++.|..+.... .++||+|+ +++++|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid 366 (391)
T d1p3wa_ 290 GDLEHGAPNILNVSFNYVEGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID 366 (391)
T ss_dssp SCTTTSCTTEEEEEETTSCHHHHHHHT---TTEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHH
T ss_pred ccccccCceEEEEEeCCCChHHHHHHh---CCCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHH
Confidence 1 11 233455666665666665543 378888776553110 25799997 45899999
Q ss_pred HHHHHHHhhC
Q 013521 432 EACRRLKNFL 441 (441)
Q Consensus 432 ~~l~~l~~~l 441 (441)
.+++.|++++
T Consensus 367 ~l~~~l~~~l 376 (391)
T d1p3wa_ 367 YTIELVRKSI 376 (391)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=6.1e-25 Score=210.55 Aligned_cols=336 Identities=10% Similarity=0.082 Sum_probs=230.6
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+++++||+.+++ ++...|.+.++..+++++++...... -++...-..+|.+.||+|+ +. ++-+++.+|.+..
T Consensus 37 g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~----g~-e~al~~~SG~~an 111 (383)
T d1bs0a_ 37 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----GY-SRALLFISGFAAN 111 (383)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----TC-SEEEEESCHHHHH
T ss_pred CeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc----CC-CceEEecccchhh
Confidence 457999999885 56678999999999999986433222 2444556688999999997 42 2445566665555
Q ss_pred HHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-CCCccEEEEcCCCCc
Q 013521 148 ISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-TSRTDIIFFCSPNNP 226 (441)
Q Consensus 148 l~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~~~~~~v~i~~p~NP 226 (441)
+.++..+..++|.|++....|.++....+..+ .+++.++..+.......+.. .++.++|+++.+.++
T Consensus 112 ~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~------------~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~ 179 (383)
T d1bs0a_ 112 QAVIAAMMAKEDRIAADRLSHASLLEAASLSP------------SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSM 179 (383)
T ss_dssp HHHHHHHCCTTCEEEEETTCCHHHHHHHHTSS------------SEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTT
T ss_pred HHHHHhhcCCCceEEeeccccHHHhhccccCC------------CcceEecchHHHHHHHHhcccCCCceEEEecCCCCC
Confidence 66688899999999999999999988887766 47777776442222111222 345667777789999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
+|.+.| +.+|+++|++||+++++||+|+..+.+..........+. ...+.+.|++|.+|.+| |++.++.+..
T Consensus 180 ~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~-~~~~~~~t~~ka~g~~G---g~v~~~~~~~- 251 (383)
T d1bs0a_ 180 DGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV-KPELLVVTFGKGFGVSG---AAVLCSSTVA- 251 (383)
T ss_dssp TCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC-CCSEEEEESSSTTSSCC---EEEEECHHHH-
T ss_pred CCcccc---hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCC-ccccccccccccccccc---cccccchhHH-
Confidence 999999 778888899999999999999977666443334333332 23467889999999887 9999888763
Q ss_pred cCCchhHHHHHHH-HhhhcC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEE
Q 013521 307 SNGYPVIKDFNRI-VCTCFN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQ 384 (441)
Q Consensus 307 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 384 (441)
+.+... ....+. ..+++...++.+.++-......+..+++++++..++.+.|.+.|+.+.+ ..++++.+.
T Consensus 252 -------~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~-~~s~Ii~v~ 323 (383)
T d1bs0a_ 252 -------DYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLAD-SCSAIQPLI 323 (383)
T ss_dssp -------HHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECS-CCSSBCCEE
T ss_pred -------HHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccCC-CCCCEEEEE
Confidence 444332 222222 2333333344444431111234667788888999999999998887754 455555555
Q ss_pred cCCC-ChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 385 FPGS-SSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 385 ~~~~-~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
+... ...++.+.|++ +||.+.+..+-. +.+...+||++ ..++++++++++.|..+
T Consensus 324 ~g~~~~a~~~~~~L~~-~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 324 VGDNSRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp EESHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHH-CCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 5421 22355666665 599998754322 34566799997 44899999999999864
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=3.6e-25 Score=211.60 Aligned_cols=289 Identities=15% Similarity=0.133 Sum_probs=185.3
Q ss_pred cHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCcccee
Q 013521 116 NMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNI 194 (441)
Q Consensus 116 ~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v 194 (441)
...+++.+|+++ | .|++++|+|+++|+.+ +.++++|||+|+++.++|.+....+...| .++
T Consensus 49 ~~~~~~~~A~~~----g--~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g------------~~v 110 (364)
T d2e7ja1 49 HDFIHNQLPKFL----G--CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAG------------LNI 110 (364)
T ss_dssp HHHHHTHHHHHT----T--SSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTT------------CEE
T ss_pred HHHHHHHHHHHh----C--cCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhcc------------ceE
Confidence 455788888885 5 4789999999999987 78889999999999999999888888888 589
Q ss_pred EEeecCCCCCccCCCCC----------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC
Q 013521 195 VYMNCRPENNFFPDLST----------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS 264 (441)
Q Consensus 195 ~~v~~~~~~~~~~~~~~----------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~ 264 (441)
+.+|+++.+++..+++. ..++++|++++|+||||.+.+ +++|+++|++||+++++|++|+....
T Consensus 111 ~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~--- 184 (364)
T d2e7ja1 111 ALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM--- 184 (364)
T ss_dssp EEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB---
T ss_pred EEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhh---
Confidence 99998765555555321 245678889999999999999 88999999999999999999974222
Q ss_pred CCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHH-HHHhhhcCCCcHHHHHHHHHhcCCCc
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFN-RIVCTCFNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~l~~~~ 343 (441)
+..+..+ +.++++.|++|+++.+| ++||++++++.+...... ...+. ..........+.....++.+.+. ..
T Consensus 185 ~~~~~~~----g~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 257 (364)
T d2e7ja1 185 PVSLKEI----GADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRR-SEKYKNKEVELLGCTARGATIITLMASFP-HV 257 (364)
T ss_dssp CCCHHHH----TCSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCB-CSSCTTSBGGGTTCCCCSHHHHHHHHHHH-HH
T ss_pred hhccccc----ccceeeeccccccCCCC-CEEEEEECHHHHHHHHhh-ccccCcccccccccccchhHHHHHHHHHH-HH
Confidence 3333333 23489999999998555 899999998875221000 00000 00000011111122222222222 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC--CCCceEEEEEcCC--------CChHHHHHHHHHhcCeEEeCCCCcCC
Q 013521 344 FQALRTVIDYYKENAKIIVDAFQSLGLKVNG--GKNAPYVWVQFPG--------SSSWDVFAEILEKTHILTIPGSGFGP 413 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~ll~~~gi~v~pg~~f~~ 413 (441)
.++++...+.+ ++++.+.+.|++.|+.... +.....+++..+. ..........+...|+.... +
T Consensus 258 ~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~ 331 (364)
T d2e7ja1 258 RERIKRWDEEV-EKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIK-----P 331 (364)
T ss_dssp HHHGGGHHHHH-HHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSC-----T
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHcCCeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCceec-----C
Confidence 12223333333 4566777888888876643 2233344444431 11122334445555765322 1
Q ss_pred CCCCeEEEEe-ecCHHHHHHHHHHHHhhC
Q 013521 414 GGNEHIRVSA-FGHREYISEACRRLKNFL 441 (441)
Q Consensus 414 ~~~~~iRls~-~~~~~~~~~~l~~l~~~l 441 (441)
.....+|++. ..+++++++++++|++++
T Consensus 332 g~~~~~~~~~~~~t~edid~~~~~l~ei~ 360 (364)
T d2e7ja1 332 GLTRYFKLSTYGLSDEEVDYVLNAFKEII 360 (364)
T ss_dssp TCCSEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCcceEEEeccCCCHHHHHHHHHHHHHHH
Confidence 2245678874 458899999999998863
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.8e-23 Score=202.42 Aligned_cols=342 Identities=15% Similarity=0.104 Sum_probs=224.7
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC----CcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA----EQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQS 146 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~ 146 (441)
++++.|+.+... +.|..+.+++.+.+++....+....+.. ..-..+.|+.+|+++ +. ++++|++|+|+|+
T Consensus 21 ~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l----~~~~~~~i~~~~~~T~ 95 (405)
T d1jf9a_ 21 LPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----NARSAEELVFVRGTTE 95 (405)
T ss_dssp EECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----TCSCGGGEEEESSHHH
T ss_pred CCeEEEeCcccc-CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHc----CCCCcccccccCcHHH
Confidence 456888877654 6889999999998875321111111100 112456677777775 65 4689999999999
Q ss_pred HHHH-HHH----hcCCCCEEEEeCCCchhhHhHHHHhccc-cccccccCccceeEEeecCCCCCccCCCC---CCCCccE
Q 013521 147 DISR-LQM----LLGSNVTVAVQDPSFPAYIDTSVIVGQA-GKFLKETGKYRNIVYMNCRPENNFFPDLS---TTSRTDI 217 (441)
Q Consensus 147 al~~-l~~----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~~~~~~~ 217 (441)
+++. +.. ..++||+|++.+..|++....++.+..+ | ++++.+|+++++.+..+.. ..+++++
T Consensus 96 ~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g---------~~v~~~~~~~~g~~~~~~~~~~i~~~t~l 166 (405)
T d1jf9a_ 96 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG---------AELRVIPLNPDGTLQLETLPTLFDEKTRL 166 (405)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHT---------CEEEEECBCTTSCBCGGGHHHHCCTTEEE
T ss_pred HHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcC---------cEEEEECCCCCCcCCHHHHHHhccCCcEE
Confidence 9986 433 3589999999999999976655443211 2 5899999987654433211 1578999
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+.+++.+|.||.++| +++|+++|+++|+++++|.+++.-.. +..+..+ +..+++.|+.|++|.+| +|+
T Consensus 167 v~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~g~~---~id~~~~----~~D~~~~s~hK~~Gp~G--~g~ 234 (405)
T d1jf9a_ 167 LAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH---PVDVQAL----DCDFYVFSGHKLYGPTG--IGI 234 (405)
T ss_dssp EEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEEGGGTTSCSS--CEE
T ss_pred EEEecCCCcccccCc---hHHhhhHHHHcCCeeecccceecccc---ccchhhc----CCceeeccccccccCCC--cee
Confidence 999999999999999 88899999999999999999873211 3333333 23499999999988665 788
Q ss_pred EEeeccccccCCchh-----------HHHH---HHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 013521 298 TVVPEELRYSNGYPV-----------IKDF---NRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVD 363 (441)
Q Consensus 298 l~~~~~~~~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 363 (441)
++++++.+....+.. .... .........+.+.....++.++++-......+...++.+...+.+.+
T Consensus 235 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~ 314 (405)
T d1jf9a_ 235 LYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALS 314 (405)
T ss_dssp EEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred eeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh
Confidence 888877642100000 0000 00001112234444444444444311111235566666666777888
Q ss_pred HHHhCC-CeeeCC-CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcC------CCCCCeEEEEe--ecCHHHHHHH
Q 013521 364 AFQSLG-LKVNGG-KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFG------PGGNEHIRVSA--FGHREYISEA 433 (441)
Q Consensus 364 ~L~~~g-~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~------~~~~~~iRls~--~~~~~~~~~~ 433 (441)
.++..+ +....+ ..+..+.+.+++....++... |+++||.++.|+.+. ...++.||+|+ +++.+|++.+
T Consensus 315 ~l~~~~~~~~~~~~~r~~ivsf~~~~~~~~~~~~~-L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l 393 (405)
T d1jf9a_ 315 QLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSF-LDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRL 393 (405)
T ss_dssp HHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHH-HHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHH
T ss_pred hhhcCCcccccCCcCcCcEEEEEcCCCCHHHHHHH-HHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 888773 344333 235577788887666666555 567799999988663 22367899997 5689999999
Q ss_pred HHHHHhh
Q 013521 434 CRRLKNF 440 (441)
Q Consensus 434 l~~l~~~ 440 (441)
++.|+++
T Consensus 394 ~~~l~~i 400 (405)
T d1jf9a_ 394 VTGLQRI 400 (405)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.7e-23 Score=200.10 Aligned_cols=335 Identities=15% Similarity=0.118 Sum_probs=225.5
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+++++||+++++ ++..+|.+.+++.+++.+++...... -++...-..+|.+.+|+++ + .+.+++++++..+
T Consensus 44 G~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~----g--~e~al~~~SG~~A 117 (401)
T d1fc4a_ 44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----G--MEDAILYSSCFDA 117 (401)
T ss_dssp SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----T--CSEEEEESCHHHH
T ss_pred CCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh----c--CCceEEecchhhh
Confidence 567999998885 56678999999999998876322211 1223445678899999986 3 4566777777766
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC----CCCCccEEEEcC
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS----TTSRTDIIFFCS 222 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~----~~~~~~~v~i~~ 222 (441)
... +..+.+++|.|++....|.++...+...+ .++..++..+.++....+. ......+|++.+
T Consensus 118 n~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~------------a~~~~~~~~d~~~le~~~~~~~~~~~~~~liv~eg 185 (401)
T d1fc4a_ 118 NGGLFETLLGAEDAIISDALNHASIIDGVRLCK------------AKRYRYANNDMQELEARLKEAREAGARHVLIATDG 185 (401)
T ss_dssp HHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSC------------SEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEES
T ss_pred hHHHHHHhcCCCcEEEeCCcchHHHHccccccC------------ceEEEEcCCChHHHHHHHHHhhhcccCceEEEEcC
Confidence 665 88899999999999999999888777766 3566555432111110010 123344555445
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc-cCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE-IPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
..+..|...+ +++|.++|++||+++|+||+|+.+..+.....+.. ....++..++++||||.+| |...|++.++
T Consensus 186 v~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~g--g~~Gg~v~g~ 260 (401)
T d1fc4a_ 186 VFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG--GASGGYTAAR 260 (401)
T ss_dssp EETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SSSCEEEEEC
T ss_pred CCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccc--cCCcccccCC
Confidence 5777888888 88999999999999999999998776644333333 2223456699999999994 4445898888
Q ss_pred ccccccCCchhHHHHHHH-Hhh-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCce
Q 013521 302 EELRYSNGYPVIKDFNRI-VCT-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAP 379 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 379 (441)
.+++ +.+... ... .....+++...++...++. ....+.++++++++.+++.+.+.+.++.... ..++
T Consensus 261 ~~~~--------~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~--~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~-~~~p 329 (401)
T d1fc4a_ 261 KEVV--------EWLRQRSRPYLFSNSLAPAIVAASIKVLEM--VEAGSELRDRLWANARQFREQMSAAGFTLAG-ADHA 329 (401)
T ss_dssp HHHH--------HHHHHHCHHHHHSCCCCHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHTTCCBCC-SSSS
T ss_pred HHHH--------HHHHcCChhhhhcCCCCHHHHHHHHhhhcc--cccCHHHHHHHHHHHHHHHhhhcccCCccCC-CCCC
Confidence 8773 333322 111 1223445555555555541 1222667889999999999999998887765 3566
Q ss_pred EEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 380 YVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 380 ~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+.+.+.. ....++.++|++ +||.+.+-.+-. +.+...+|+++ ..++++++++++.|+++
T Consensus 330 Iv~v~~~~~~~a~~~~~~L~~-~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev 393 (401)
T d1fc4a_ 330 IIPVMLGDAVVAQKFARELQK-EGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRI 393 (401)
T ss_dssp EEEEEEECHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHH-CCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 66666642 123356677665 599988743222 44566799997 34899999999999875
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.89 E-value=6.3e-22 Score=184.73 Aligned_cols=326 Identities=13% Similarity=0.105 Sum_probs=207.2
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHH
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQM 153 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~ 153 (441)
++| .+++..+++|.+++||.+... ....+|++.....++|+.+|+++ |+++++|++|+|+++++.+ +..
T Consensus 2 ~~f-~nd~~~g~~P~v~eAl~~~~~-----~~~~~y~~~~~~~~lr~~ia~~~----g~~~~~v~~tsggtean~~a~~~ 71 (340)
T d1svva_ 2 YSF-VNDYSVGMHPKILDLMARDNM-----TQHAGYGQDSHCAKAARLIGELL----ERPDADVHFISGGTQTNLIACSL 71 (340)
T ss_dssp EEC-SCSCSSCCCHHHHHHHHHHTT-----CCCCSTTCSHHHHHHHHHHHHHH----TCTTSEEEEESCHHHHHHHHHHH
T ss_pred CCc-ccCCCCCCCHHHHHHHHHHhh-----cCCCCCCCCHHHHHHHHHHHHHh----CCCcceEEEcCCHHHHHHHHHHH
Confidence 345 256666778999999998654 44557888888899999999997 8888999999999999887 678
Q ss_pred hcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC--------CCCCCCccEEEEcCCCC
Q 013521 154 LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD--------LSTTSRTDIIFFCSPNN 225 (441)
Q Consensus 154 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~--------~~~~~~~~~v~i~~p~N 225 (441)
++.+++.+++..+.+..+.......+... ...............+ .........++++.+.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (340)
T d1svva_ 72 ALRPWEAVIATQLGHISTHETGAIEATGH----------KVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTT 141 (340)
T ss_dssp HCCTTEEEEEETTSHHHHSSTTHHHHTTC----------CEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSC
T ss_pred Hhhhccccccccccceeeeecccccccce----------eeeecccccccccchhHHHHhhhhhcccCCcceeeeecccc
Confidence 88999999999999988755444443211 1222221111110000 00112334455555556
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
++|.+.+.+++..+.+.|++++.+++.|++|........ ..+.... .....+...+.+|.. .+.+.++......
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 217 (340)
T d1svva_ 142 EVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADI--ARLTDMFYIGATKAG--GMFGEALIILNDA 217 (340)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHH--HHHCSEEEEECTTTT--CSSCEEEEECSGG
T ss_pred cccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccc--cccceeeecCCcccc--ccccccccccchh
Confidence 678888999999999999999999999999975433321 1111111 112234455555554 3444555555444
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWV 383 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 383 (441)
.... ....................++.+.+..... ....++...+++.+.+.|++.|+++..|.+++++++
T Consensus 218 ~~~~------~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~~ 288 (340)
T d1svva_ 218 LKPN------ARHLIKQRGALMAKGWLLGIQFEVLMKDNLF---FELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFP 288 (340)
T ss_dssp GCTT------HHHHHHHTTCCCTTTHHHHHHHHHHTSTTHH---HHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECB
T ss_pred hhhh------hhhhcccccCccchhhHHHHHHHHHhhhhHH---HHHHHHHHHHHhhhHHHHhcCCCeeecCCCceEEEE
Confidence 4211 1111112222222333444444445543333 555667788888999999999999887778999999
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.++ .+...+++++..+...+. .+.++++||+++ +++++++++++++|+++
T Consensus 289 ~~~----~~~~~~l~~~~~~~~~~~---~~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 289 ILE----NTMIAELNNDFDMYTVEP---LKDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp EEE----HHHHHHHTTTEECEEEEE---ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred eCC----HHHHHHHHHhhhhhcccc---cCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 885 355666665522222221 234578999985 56899999999999874
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.89 E-value=6.4e-22 Score=191.64 Aligned_cols=341 Identities=14% Similarity=0.114 Sum_probs=224.2
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC----CcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA----EQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQS 146 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~~ 146 (441)
++++.|+.+... +.|+.+.+++.+.+.+.........|.. ..-..+.|+.+|+++ +++ ++.|++++|+++
T Consensus 21 ~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~ll----ga~~~~~i~~~~~tt~ 95 (408)
T d1t3ia_ 21 HPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI----NARSPREIVYTRNATE 95 (408)
T ss_dssp EECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT----TCSCGGGEEEESSHHH
T ss_pred CCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh----CCCCcccEEeecchHH
Confidence 457899877765 5789999999998876421111111110 112335677777775 886 578999999999
Q ss_pred HHHHH-HH----hcCCCCEEEEeCCCchhhHhHHHHhcc-ccccccccCccceeEEeecCCCCCccCC-CC--CCCCccE
Q 013521 147 DISRL-QM----LLGSNVTVAVQDPSFPAYIDTSVIVGQ-AGKFLKETGKYRNIVYMNCRPENNFFPD-LS--TTSRTDI 217 (441)
Q Consensus 147 al~~l-~~----l~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~--~~~~~~~ 217 (441)
+++++ .. .+++||+|++.+-.|++....++.... .| .++..++.+..+....+ ++ ..+++++
T Consensus 96 ~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g---------~~v~~~~~~~~~~~~~~~l~~~~~~~t~l 166 (408)
T d1t3ia_ 96 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG---------AVLKFVQLDEQESFDLEHFKTLLSEKTKL 166 (408)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC---------CEEEEECBCTTSSBCHHHHHHHCCTTEEE
T ss_pred HHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccC---------ceEeeeeccccccccHHHhhhccCCCceE
Confidence 98873 32 358999999999999987655543221 12 47888887765443222 11 1478999
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
|.+++.+|-||..+| +++|.++|+++|+++++|.+++.-. .|..+..+ +..+++.|..|++|.+| +|+
T Consensus 167 v~i~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~g~---~~id~~~~----~~D~~~~s~hK~~gp~G--~g~ 234 (408)
T d1t3ia_ 167 VTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPH---YPLDVQLI----DCDWLVASGHKMCAPTG--IGF 234 (408)
T ss_dssp EEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTT---SCCCHHHH----TCSEEEEEGGGTTSCTT--CEE
T ss_pred EEEecccccccccCc---HHHHhhhhhccCceeeeccceeccc---cccccccc----CCceEEeccccccCCCC--ccc
Confidence 999988999999999 7888999999999999999987321 13334333 33499999999987444 788
Q ss_pred EEeeccccccCCchhH---------------HHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 013521 298 TVVPEELRYSNGYPVI---------------KDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 362 (441)
++.+++.+....+... .... ......+.+.....++.++++-......++..++..+..+++.
T Consensus 235 l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~--~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~ 312 (408)
T d1t3ia_ 235 LYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELP--HKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLW 312 (408)
T ss_dssp EEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTT--GGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhcCCceecCCcccccccccccccCCch--hhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHh
Confidence 8888766311000000 0000 0011223344444444444431111124666777777888888
Q ss_pred HHHHhC-CCeeeCC-----CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC------CCCCeEEEEe--ecCHH
Q 013521 363 DAFQSL-GLKVNGG-----KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP------GGNEHIRVSA--FGHRE 428 (441)
Q Consensus 363 ~~L~~~-g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~iRls~--~~~~~ 428 (441)
+.+++. ++.+..+ ..+..+.+.+++.+..++...| +++||.++.|+.|.. ...+.||||+ +++.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~ 391 (408)
T d1t3ia_ 313 QGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMV-DQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKE 391 (408)
T ss_dssp HHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHH-HTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHH
T ss_pred hhhccCccccccCCCccccCcceEEEEEeCCCCHHHHHHHH-hhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHH
Confidence 888877 5555432 2245677888876777776665 667999999987642 2357899997 66999
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
|++.+++.|++++
T Consensus 392 did~li~~L~~~~ 404 (408)
T d1t3ia_ 392 EIDLFLQSLQATI 404 (408)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999763
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=2.7e-21 Score=185.35 Aligned_cols=337 Identities=15% Similarity=0.159 Sum_probs=203.4
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC----CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA----EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
|.|+.+. ..++|+.+.+++.+.+.+... +....|.. .....+.|+.+|+++ ++++++|++++|+++++..
T Consensus 3 iyld~a~-~~~~p~~v~ea~~~~~~~~~~-np~~~~~~~~~~~~~~~~aR~~ia~l~----~~~~~~i~~~~~~T~~l~~ 76 (376)
T d1eg5a_ 3 VYFDNNA-TTRVDDRVLEEMIVFYREKYG-NPNSAHGMGIEANLHMEKAREKVAKVL----GVSPSEIFFTSCATESINW 76 (376)
T ss_dssp EECBTTT-CCCCCHHHHHHHHHHHHTCCC-CTTCSSHHHHHHHHHHHHHHHHHHHHH----TSCGGGEEEESCHHHHHHH
T ss_pred EEEECcc-cccCCHHHHHHHHHHHHHcCC-CCccccHHHHHHHHHHHHHHHHHHHHc----CCCCCcEEEECCHHHHHHh
Confidence 4454433 246788899999998875321 00001110 112345578888886 8999999999999999987
Q ss_pred H-H----HhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CC--CCCCccEEEEcC
Q 013521 151 L-Q----MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LS--TTSRTDIIFFCS 222 (441)
Q Consensus 151 l-~----~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~--~~~~~~~v~i~~ 222 (441)
+ . ....+|+.|++....|+.+....+....+| .+++.+|++.++.++++ ++ ..++++++++++
T Consensus 77 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g---------~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~ 147 (376)
T d1eg5a_ 77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKG---------FKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMA 147 (376)
T ss_dssp HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTT---------CEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEES
T ss_pred hhhcccccccccCcccccccccchhhHHHHHHHHhcC---------CEEEEEcCCCCCeECHHHHHHhcCCCceEEEEEC
Confidence 4 2 345788999999999988877776654333 48999998865433221 11 148999999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
++|+||..++.+++.++++ ++..++++++|.+++.... +..+..+ +..++++|++|++|.+|.++.|+. +
T Consensus 148 v~~~tG~~~~~~~i~~~~~-~~~~~~~~~vD~~q~~g~~---~~d~~~~----~~D~~~~s~~K~~gp~G~~~l~~~--~ 217 (376)
T d1eg5a_ 148 ANNEVGTIQPVEDVTRIVK-KKNKETLVHVDAVQTIGKI---PFSLEKL----EVDYASFSAHKFHGPKGVGITYIR--K 217 (376)
T ss_dssp BCTTTCBBCCHHHHHHHHH-HHCTTCEEEEECTTTTTTS---CCCCTTT----CCSEEEEEGGGGTSCTTCEEEEEC--T
T ss_pred Cccccceeeeehhhhhhhh-hcccCceeEEEeeeccccc---ccccccc----CccceecccceeecCCCceeEEec--c
Confidence 9999999999555444433 2344899999998873211 2333222 345999999999998887666643 3
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC---CCce
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG---KNAP 379 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~ 379 (441)
+...... .. .............+......+.+... .................+.+.+.|.......... ....
T Consensus 218 ~~~~~p~--~~-g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 293 (376)
T d1eg5a_ 218 GVPIRPL--IH-GGGQERGLRSGTQNVPGIVGAARAME-IAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPN 293 (376)
T ss_dssp TSCCCCS--BC-SSCTTTTTBCSCCCHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTT
T ss_pred CcccCCc--cc-CCCCcccccCCcccchhhhhHHHHhh-ccccchhhhhhhhhhhhhhhccccccccccccccccccccc
Confidence 3210000 00 00000111111223333332333222 1112234455556666777888887664333222 1233
Q ss_pred EEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCC-----------------CCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 380 YVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGG-----------------NEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 380 ~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-----------------~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+.+.+++....++.. .++++||.+++|..+.... .++||+|+ +++.+|++.+++.|+++
T Consensus 294 ~~~~~~~~~~~~~~~~-~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~i 372 (376)
T d1eg5a_ 294 TLSVSFPNIRGSTLQN-LLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEI 372 (376)
T ss_dssp EEEEECTTCCHHHHHH-HHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eeeeccCCCCHHHHHH-HHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4566666666656555 5667799999987653221 24699997 56899999999999986
Q ss_pred C
Q 013521 441 L 441 (441)
Q Consensus 441 l 441 (441)
+
T Consensus 373 v 373 (376)
T d1eg5a_ 373 L 373 (376)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=3.4e-22 Score=188.12 Aligned_cols=323 Identities=15% Similarity=0.128 Sum_probs=199.7
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQ 152 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~ 152 (441)
+|||.....+.| +|++++||.++. .+...|++.+...+|++.+|+++ |. +++++++|+++|..+ +.
T Consensus 1 ~~~~~~~~~t~p-~p~v~~A~~~a~------~g~~~yg~~p~~~~le~~lA~~~----G~--~~~~~~~sGt~A~~~al~ 67 (343)
T d1m6sa_ 1 MIDLRSDTVTKP-TEEMRKAMAQAE------VGDDVYGEDPTINELERLAAETF----GK--EAALFVPSGTMGNQVSIM 67 (343)
T ss_dssp CEECSCGGGCCC-CHHHHHHHHTCC------CCCGGGTCCHHHHHHHHHHHHHT----TC--SEEEEESCHHHHHHHHHH
T ss_pred CcccccccCCCC-CHHHHHHHHhhh------cCCcccCCCHHHHHHHHHHHHHH----CC--CeEEEeCCHHHHHHHHHH
Confidence 367765544444 567888887643 23335888888999999999986 54 578888888888776 78
Q ss_pred HhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-----CC----CCCCccEEEEc-C
Q 013521 153 MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-----LS----TTSRTDIIFFC-S 222 (441)
Q Consensus 153 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-----~~----~~~~~~~v~i~-~ 222 (441)
.+.++||.+++..+.+..+.......+..+ ..+..++.+.. ...++ +. ...++..+++. .
T Consensus 68 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 137 (343)
T d1m6sa_ 68 AHTQRGDEVILEADSHIFWYEVGAMAVLSG---------VMPHPVPGKNG-AMDPDDVRKAIRPRNIHFPRTSLIAIENT 137 (343)
T ss_dssp HHCCTTCEEEEETTCHHHHSSTTHHHHHTC---------CEEEEECEETT-EECHHHHHHHSCCSCTTSCCEEEEEEESS
T ss_pred HHhccCCceeccccccceeeeccccccccc---------ceeeccccccC-ccCHHHHHHhhhhhhcccccccccccccc
Confidence 888999999999999987755544443211 13333333221 11111 11 12445555544 6
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
++|+.|.+++.+++++|+++|++|++++++|+++..+............. ......+.+.+|. ..|.+.|+++...
T Consensus 138 ~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~g~~~~~~~~~~ 213 (343)
T d1m6sa_ 138 HNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA--GYADSVMFCLSKG--LCAPVGSVVVGDR 213 (343)
T ss_dssp BTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH--HTCSEEEEESSST--TCCSSCEEEEECH
T ss_pred cccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhc--ccccccccccccc--ccccccccccccH
Confidence 78999999999999999999999999999999998654332111111111 1112333333333 3566678887777
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYV 381 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 381 (441)
+.+ ............+.+.....++..... ........+...++...+.+.+.++ +.....+..++++
T Consensus 214 ~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 282 (343)
T d1m6sa_ 214 DFI--------ERARKARKMLGGGMRQAGVLAAAGIIA---LTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMV 282 (343)
T ss_dssp HHH--------HHHHHHHHHHTCCCSSTHHHHHHHHHH---HHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEE
T ss_pred HHH--------hhhHhhCcccccccchhHHHHHhhhhh---hhhhHHHHHHHHHHHHHhhhHHHHhccCccCCCCCceEE
Confidence 663 333333333333333333322222221 1111122233444555556666554 3444445678899
Q ss_pred EEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 382 WVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 382 ~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
|+++++ ....++.+.|+++ ||.+.|. +++.+|+++ ..+++++++++++|++++
T Consensus 283 ~~~~~~~~~~a~~l~~~L~~~-Gi~v~~~------~~~~iRi~~~~~~t~edid~~v~~l~~v~ 339 (343)
T d1m6sa_ 283 ILRTDNLKVNAHGFIEALRNS-GVLANAV------SDTEIRLVTHKDVSRNDIEEALNIFEKLF 339 (343)
T ss_dssp EEECTTSSSCHHHHHHHHHHH-TEECEEE------ETTEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcccHHHHHHHHHHC-CCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 999973 4556777777665 9999874 356899986 348999999999999864
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=1.1e-20 Score=177.59 Aligned_cols=326 Identities=12% Similarity=0.046 Sum_probs=201.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
+.++|.+ ++..+.+|++++||.++.. .+...|+++....++|+.+|+++ +. +..+++|+|++++... +
T Consensus 3 ~~~~f~s-~n~~g~~P~v~~A~~~a~~-----~~~~~~~~~~~~~~l~~~la~~~----g~-~~~v~f~~sGt~An~~a~ 71 (345)
T d1v72a1 3 PALGFSS-DNIAGASPEVAQALVKHSS-----GQAGPYGTDELTAQVKRKFCEIF----ER-DVEVFLVPTGTAANALCL 71 (345)
T ss_dssp CCCBCSC-GGGCCCCHHHHHHHHHTTS-----SCCCSTTCSHHHHHHHHHHHHHH----TS-CCEEEEESCHHHHHHHHH
T ss_pred CCcCcCC-CCCCCCCHHHHHHHHHHhc-----cCccccCCCHHHHHHHHHHHHHH----CC-CcEEEECCchHHHHHHHH
Confidence 4677774 4445678899999988543 34456778888899999999997 64 3579999999999887 6
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-C----C----CCCCccE-EEEc
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-L----S----TTSRTDI-IFFC 221 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~----~----~~~~~~~-v~i~ 221 (441)
..++.+++.+++....+.............+ ..+..++.+..+...++ + . ....+.. ++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 142 (345)
T d1v72a1 72 SAMTPPWGNIYCHPASHINNDECGAPEFFSN---------GAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSI 142 (345)
T ss_dssp HTSCCTTEEEEECTTSHHHHSSTTHHHHHTT---------SCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEE
T ss_pred HHHHhcCCccccccccceeeechhhHHHhcC---------cccccccccccccccHHHhhhhhcccccccccccceeeee
Confidence 7777888888888888777655444333222 24444443322211111 0 0 1123443 3444
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
++.|++|...+.++++++.++|++||++++.|+++..........++.......+......+..|..+ ... +.....
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~ 219 (345)
T d1v72a1 143 TQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGV-LAA--EAIVLF 219 (345)
T ss_dssp ESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTC-SSC--EEEEES
T ss_pred eccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCcccccc-ccc--cccccc
Confidence 77899999999999999999999999999999998754332111112111111222344444444432 222 333333
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCc--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCc
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGAS--NIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNA 378 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 378 (441)
.... ...............+ .....++...+.+. ...+......++.+.+.+.+.++ ++.+..+..+
T Consensus 220 ~~~~-------~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~ 289 (345)
T d1v72a1 220 NTSL-------ATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDD---LWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEA 289 (345)
T ss_dssp SGGG-------HHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCS
T ss_pred hhhh-------hhhccccccccccccchhhHHhhhhHHHHHHh---hhhhhccchhhHHHHHHHHHHhcCCcEeccCCCc
Confidence 3221 1112211112222222 22222222233322 22445555666677777888887 8888777788
Q ss_pred eEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 379 PYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
++++++++ .+.++.|+++ |+.+.++. .+++.+||++ .+++|+++++++.|+++
T Consensus 290 niv~~~~~----~~~~~~L~~~-gi~v~~~~----~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 290 NILFCRLD----SAMIDALLKA-GFGFYHDR----WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp SEEEEEEC----HHHHHHHHHT-TCBCBCSS----SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred cEEEEEcC----HHHHHHHHHc-CCCccccC----CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999985 3566777765 99886542 3578999997 45899999999999975
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=1.8e-18 Score=162.93 Aligned_cols=321 Identities=12% Similarity=0.058 Sum_probs=204.9
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEE
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTV 161 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~V 161 (441)
|.+.|+.|+++|.+ +...+++ ....++-+.+.+.+++.++.+.+.|++++|+|.+++. +..++.+||+|
T Consensus 8 P~~v~~~V~~am~~--------~~~~hr~--~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~v 77 (348)
T d1iuga_ 8 PVRLHPKALEALAR--------PQLHHRT--EAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERV 77 (348)
T ss_dssp SCCCCHHHHHHHHS--------CCCCTTS--HHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEE
T ss_pred CCCCCHHHHHHhcC--------CCCCCCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccc
Confidence 35678888888765 3333332 2334444444444444457777888999999999997 68899999999
Q ss_pred EEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHH
Q 013521 162 AVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKL 239 (441)
Q Consensus 162 lv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i 239 (441)
++..-++++- ...++.++ .++..+.......+.++.....+++.+++++..+.||...+ +++|
T Consensus 78 lv~~~G~f~~~~~~~a~~~~------------~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~h~eTstG~~~~---i~~i 142 (348)
T d1iuga_ 78 LVPVYGKFSERFYEIALEAG------------LVVERLDYPYGDTPRPEDVAKEGYAGLLLVHSETSTGALAD---LPAL 142 (348)
T ss_dssp EEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCTTTSCCSSCSEEEEESEETTTTEECC---HHHH
T ss_pred eeecchHHHHHHHHHHHhcC------------cccccccccCCCccccccccccCCCeeEEEecchhhhhhcc---HHHH
Confidence 9988887663 34444444 36666666544343333334578899999999999999999 7778
Q ss_pred HHHHHHc--CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCccc-CCccceeEEEEeeccccccCC-----ch
Q 013521 240 VEFAKAN--GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFA-GFTGVRLGWTVVPEELRYSNG-----YP 311 (441)
Q Consensus 240 ~~~a~~~--~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-~~~G~r~G~l~~~~~~~~~~~-----~~ 311 (441)
.++|++| +.++++|.+.+.... |..+.. .+..+++.|..|.+ |.|| +|+++++++.+.... ..
T Consensus 143 ~~~~~~~~~~~l~~vDavss~g~~---~i~~d~----~~iD~~~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~d 213 (348)
T d1iuga_ 143 ARAFKEKNPEGLVGADMVTSLLVG---EVALEA----MGVDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLD 213 (348)
T ss_dssp HHHHHHHCTTCEEEEECTTTBTTB---CCCSGG----GTCSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTC
T ss_pred HHHHHhhhccceeechhhhccccc---cccccc----ccCCEEEeccccceecCCc--eeeeeechHHHhhhcccccccc
Confidence 8888777 478899998773221 233322 23458999999988 6666 799999888764321 11
Q ss_pred hHHHHHHHHh-hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCc-eEEEEEcC-CC
Q 013521 312 VIKDFNRIVC-TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNA-PYVWVQFP-GS 388 (441)
Q Consensus 312 ~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~-~~ 388 (441)
+...+..... ...++++.....+..++|+.. .+...+..+..+..+..+...++..|+...+.... ..+.+.+| +.
T Consensus 214 l~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~ 292 (348)
T d1iuga_ 214 LARELKAQKEGESAWTPAINLVLAVAAVLEEV-LPRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGV 292 (348)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH-GGGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTC
T ss_pred hhhhhhhhccCcccccccchHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCCC
Confidence 2222222222 223345554554455555411 11123333444444556666666668887543222 24778887 55
Q ss_pred ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 389 SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 389 ~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
+..++... ++++||.+.+|. ++.....+||+. ..+.++++.+++.|+++|
T Consensus 293 ~~~~~~~~-l~~~gi~i~~G~--~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l 344 (348)
T d1iuga_ 293 PYARVKEA-FAQRGAVIAGGQ--GPLKGKVFRLSLMGAYDRYEALGVAGMFREVL 344 (348)
T ss_dssp CHHHHHHH-HHTTTEECEECC--GGGTTTEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHCCeEEEcCc--cccCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 66666555 566799999885 344457899995 347889999999988764
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.4e-19 Score=174.04 Aligned_cols=330 Identities=16% Similarity=0.153 Sum_probs=205.9
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHHHHH-
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSDISR- 150 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~al~~- 150 (441)
+-|+-| |.+.|+.++++|.. ....+.++ ..-..++|+.+++. ++++.+ .|+++.|+|.+++.
T Consensus 21 ~l~~pG--P~~~~~~Vl~am~~--------~~i~HRs~~f~~i~~ea~~~l~~l----lg~~~~~~ii~~gsgT~a~~~~ 86 (388)
T d1h0ca_ 21 LLLGPG--PSNLPPRIMAAGGL--------QMIGSMSKDMYQIMDEIKEGIQYV----FQTRNPLTLVISGSGHCALEAA 86 (388)
T ss_dssp EECSSS--CCCCCHHHHHHHTC--------CCCCTTSHHHHHHHHHHHHHHHHH----HTCCCSEEEEESSCHHHHHHHH
T ss_pred ccccCC--CCCCCHHHHHHhCc--------CCCCCCCHHHHHHHHHHHHHHHHH----hCCCCCcEEEEcCcHHHHHHHH
Confidence 445555 34578888888753 23333322 12234455555555 477644 79999999999997
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CC---CCCCccEEEEcCCCCc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LS---TTSRTDIIFFCSPNNP 226 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~---~~~~~~~v~i~~p~NP 226 (441)
+..++.+|+.+++...++++......... .+ ..+..+..+.......+ .+ ...+++++++++.+|.
T Consensus 87 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~ 156 (388)
T d1h0ca_ 87 LVNVLEPGDSFLVGANGIWGQRAVDIGER-IG---------ARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESS 156 (388)
T ss_dssp HHHHCCSSCCEEECBSSHHHHHHHHHHHH-HC-----------CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred HHHhhccCCceeeecccceeeeecccccc-cc---------ccccccccCCccccchHHHHHHhccCCcceEEEeeeeec
Confidence 78889999999999998887644332221 11 23334444332222111 10 1357899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
||.+.| +++|.++|++||+++++|.+++-... +..+.. .+.++++.|..|.++ +.-.+|+++.++..+.
T Consensus 157 tG~i~p---i~~i~~~~~~~g~~~~vD~~qs~g~~---~~d~~~----~~~D~~~~s~~K~~~-gp~g~~~~~~~~~~~~ 225 (388)
T d1h0ca_ 157 TGVLQP---LDGFGELCHRYKCLLLVDSVASLGGT---PLYMDR----QGIDILYSGSQKALN-APPGTSLISFSDKAKK 225 (388)
T ss_dssp TTEECC---CTTHHHHHHTTTCEEEEECTTTTTTS---CCCTTT----TTCSEEEEESSSTTC-CCTTCEEEEECHHHHH
T ss_pred cccccC---HHHHHHHhhcccccceeccccccccc---cccccc----cccceeccccccccc-CCCceEEEeecHHHHH
Confidence 999999 88999999999999999999874221 222222 244589999999986 4446788887765531
Q ss_pred cC--------Cchh-HHHHHHHH------hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013521 307 SN--------GYPV-IKDFNRIV------CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLK 371 (441)
Q Consensus 307 ~~--------~~~~-~~~~~~~~------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 371 (441)
.. .... ........ .....+++.....+..+++.......++.+.++.++..+++++.++..|+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~ 305 (388)
T d1h0ca_ 226 KMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQ 305 (388)
T ss_dssp HHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcc
Confidence 10 0000 00011100 011122333333333333331111224677777788888899988887665
Q ss_pred eeCCC----CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE-e--ecCHHHHHHHHHHHHhhC
Q 013521 372 VNGGK----NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS-A--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 372 ~~~~~----~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls-~--~~~~~~~~~~l~~l~~~l 441 (441)
...+. ....+.+.++ +.+..++...|++++||.+..|.. ....+.|||| + +++.++++++++.|+++|
T Consensus 306 ~~~~~~~~rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~--~~~~~~iRis~~g~~~t~edid~li~aL~~~L 381 (388)
T d1h0ca_ 306 LFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLG--PSTGKVLRIGLLGCNATRENVDRVTEALRAAL 381 (388)
T ss_dssp BSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCG--GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred cccCCHHHcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCch--hhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 53221 2235678886 567888889998888999998853 2345689999 5 357899999999999864
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=1.9e-18 Score=164.11 Aligned_cols=320 Identities=10% Similarity=0.054 Sum_probs=199.7
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCCCc--EEEcCCcHHHHHH-HHHhcCC
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEGDE--IFISDGAQSDISR-LQMLLGS 157 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~--I~~t~G~~~al~~-l~~l~~~ 157 (441)
|.+.|+.|+++|.+ ...+++++ ..-..+.|+.+++++ +++++. |++|+|+|.+++. +..+..+
T Consensus 8 P~~~~~~V~~A~~~--------~~~~~~~~~~~~~~~~~r~~l~~l~----~~~~~~~~i~~t~s~T~~~~~~~~~l~~~ 75 (361)
T d1m32a_ 8 PLTTSRTVKEAMLF--------DSCTWDDDYNIGVVEQIRQQLTALA----TASEGYTSVLLQGSGSYAVEAVLGSALGP 75 (361)
T ss_dssp SCCCCHHHHHTTCC--------CCCTTSHHHHTTTHHHHHHHHHHHH----CSSSSEEEEEEESCHHHHHHHHHHHSCCT
T ss_pred CCCCCHHHHHHhhh--------hccCCCcHHHHHHHHHHHHHHHHHh----CCCCCCEEEEECCCHHHHHHHHHHHhhhh
Confidence 45677888777643 22223321 245578888888886 887765 7788889999998 6788888
Q ss_pred CCEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCccCCC-----CCCCCccEEEEcCCCCccccC
Q 013521 158 NVTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-----STTSRTDIIFFCSPNNPTGHA 230 (441)
Q Consensus 158 gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-----~~~~~~~~v~i~~p~NPtG~~ 230 (441)
++.+++....+... .......+ .....+..........+. ...++++++.+++-+|-||..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~ 143 (361)
T d1m32a_ 76 QDKVLIVSNGAYGARMVEMAGLMG------------IAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGML 143 (361)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHT------------CCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEE
T ss_pred ccccceeeehhhhhhHHHHhhhhh------------cccccccccccCCccchhhHHHHHhccCccceEEEeeecccccc
Confidence 88777766665443 22222233 233333333222111111 114789999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCc
Q 013521 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY 310 (441)
Q Consensus 231 ~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~ 310 (441)
++ +++|.++|++||+++++|.+++-... +..+.. .+.++++.|..|.++.| ..+|+++++++.+.....
T Consensus 144 ~~---i~~i~~~~~~~g~~~~vDa~qs~G~~---~~d~~~----~~~D~~~~s~~K~l~gp-~G~g~l~~~~~~~~~~~~ 212 (361)
T d1m32a_ 144 NP---IDEVGALAHRYGKTYIVDAMSSFGGI---PMDIAA----LHIDYLISSANKCIQGV-PGFAFVIAREQKLAACKG 212 (361)
T ss_dssp CC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCTTT----TTCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTT
T ss_pred hh---hhhhhhhhcccceeeEeecccccCcc---cccccc----cccceEEeeecccccCC-CCceEEEechhhhhhhcc
Confidence 99 88999999999999999999984221 223322 24569999999988533 348888888766422110
Q ss_pred h-------hHHH---HHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC---
Q 013521 311 P-------VIKD---FNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLGLKVNGGK--- 376 (441)
Q Consensus 311 ~-------~~~~---~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--- 376 (441)
. .... ..........+++.....+....+..... ........+.+...+.+.+.++..|+....++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~r 292 (361)
T d1m32a_ 213 HSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELH 292 (361)
T ss_dssp CCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGB
T ss_pred ccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhc
Confidence 0 0001 11111112233455555554544431111 12355556677777888888888876654332
Q ss_pred CceEEEEEcC---CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 377 NAPYVWVQFP---GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 377 ~~~~~~~~~~---~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
....+.+.+| ..+..++...|. ++||.+.+|.. ..++.+|||+ +.+++|++++++.|+++|
T Consensus 293 s~~v~~~~~p~~~~~~~~~~~~~l~-~~gi~i~~G~~---~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 293 SPIITAFYSPEDPQYRFSEFYRRLK-EQGFVIYPGKV---SQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp CSSEEEEECCCCTTCCHHHHHHHHH-HTTEECEECCC---SSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCCCHHHHHHHHH-HCCcEEECCCc---CCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 2234566765 234556666655 45999998864 2356899995 458999999999999876
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.79 E-value=2.3e-18 Score=166.26 Aligned_cols=335 Identities=13% Similarity=0.071 Sum_probs=197.8
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC-CCCC--CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK-GYGA--EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~-~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
++++.|..+... +.|..+.+++.+.+.+........ .+.. ..-..++|+.+|++ +++++++|++|+|+|+++
T Consensus 26 ~~~iYLd~as~g-~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~l----lga~~~ei~~~~~~T~~~ 100 (404)
T d1qz9a_ 26 EGVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATL----IGARDGEVVVTDTTSINL 100 (404)
T ss_dssp TTCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTT----TTCCTTSEEECSCHHHHH
T ss_pred CCCEEcCCcccc-cCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHH----hCCCCCcEEEecCchHHH
Confidence 357888877643 467888999999886532101110 0000 11233567777776 499999999999999998
Q ss_pred HH-HHH------hcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC--CCCCccEEE
Q 013521 149 SR-LQM------LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS--TTSRTDIIF 219 (441)
Q Consensus 149 ~~-l~~------l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~--~~~~~~~v~ 219 (441)
+. +.. ...+++.|++.+-.|++........+.+... ..+....... ..+++ ..+++++|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~----~~~~~~~i~~~T~lV~ 169 (404)
T d1qz9a_ 101 FKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQ-------QGYTLRLVDS----PEELPQAIDQDTAVVM 169 (404)
T ss_dssp HHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHC-------SSCEEEEESS----GGGHHHHCSTTEEEEE
T ss_pred HHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeee-------eceecccccc----chhHHHhcCCCceEEE
Confidence 86 321 2367888888777766543333333321100 1111111111 01111 147899999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+++.+|.||..+| +++|+++|+++|+++++|.++..... +..+... +..+++.|.+|.+..+.-.+|+++
T Consensus 170 i~~v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~g~~---~~~~~~~----~~d~~~~s~~K~~~~~~g~~g~~~ 239 (404)
T d1qz9a_ 170 LTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGAV---PVDLHQA----GADYAIGCTYKYLNGGPGSQAFVW 239 (404)
T ss_dssp EESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCHHHH----TCSEEEECSSSTTCCCTTCCCEEE
T ss_pred Eecccccccceec---HHHHhccccccccceeEEeecccccc---ccccccc----cceEEEEechhhcccCCceEEEEE
Confidence 9999999999999 89999999999999999999884222 3333333 334889999998853444468888
Q ss_pred eeccccccCCchh--H----HH---------HHHHHhhhcCCCc---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 300 VPEELRYSNGYPV--I----KD---------FNRIVCTCFNGAS---NIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 300 ~~~~~~~~~~~~~--~----~~---------~~~~~~~~~~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
.++.......... . .. ............+ .....++...+.+.+...+++...........+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 319 (404)
T d1qz9a_ 240 VSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIEL 319 (404)
T ss_dssp ECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred echhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Confidence 7766541100000 0 00 0000001111122 233334445555555544444444444444444
Q ss_pred HHHHHh-CCCeeeCCCC----ceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe---ecCHHHHHHH
Q 013521 362 VDAFQS-LGLKVNGGKN----APYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA---FGHREYISEA 433 (441)
Q Consensus 362 ~~~L~~-~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~---~~~~~~~~~~ 433 (441)
.+.+.. .|+++..|.. +..+.+.++ +..++.+.|. ++||.+.. ..++.||||+ +++.+|++++
T Consensus 320 ~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~--~~~~v~~~L~-~~gi~~~~------r~~~~lRiS~~h~ynt~~did~~ 390 (404)
T d1qz9a_ 320 VEQRCAAHELTLVTPREHAKRGSHVSFEHP--EGYAVIQALI-DRGVIGDY------REPRIMRFGFTPLYTTFTEVWDA 390 (404)
T ss_dssp HHHHHTTSCCEECSCSSGGGBCSEEEEECT--THHHHHHHHH-TTTEECEE------ETTTEEEEECCTTTCCHHHHHHH
T ss_pred HHhhccCCCEEEECCCCccceeeEEEEecC--CHHHHHHHHH-HCCCEEee------cCCCeEEEECCCCCCCHHHHHHH
Confidence 444444 3788765432 456777776 4666666654 56997531 1246899996 3689999999
Q ss_pred HHHHHhhC
Q 013521 434 CRRLKNFL 441 (441)
Q Consensus 434 l~~l~~~l 441 (441)
++.|+++|
T Consensus 391 ~~~L~~vl 398 (404)
T d1qz9a_ 391 VQILGEIL 398 (404)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.78 E-value=1.2e-17 Score=159.61 Aligned_cols=330 Identities=14% Similarity=0.091 Sum_probs=203.4
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC--cCcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHHHHHH-
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE--QGNMALRTAIADKFYKDMGIEG-DEIFISDGAQSDISR- 150 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~al~~- 150 (441)
+-|+-| +.+.|+.|+++|.. ...++++.. .-..+.|+.+++.+ +++. ..|++++|++.+++.
T Consensus 20 ~l~~PG--P~~v~~~Vl~am~~--------~~~~hr~~ef~~i~~~~r~~l~~ll----~~~~~~~i~~~g~gT~~~~~~ 85 (377)
T d1vjoa_ 20 LLLGPG--PSNAHPSVLQAMNV--------SPVGHLDPAFLALMDEIQSLLRYVW----QTENPLTIAVSGTGTAAMEAT 85 (377)
T ss_dssp EECSSS--CCCCCHHHHHHHSS--------CCCCTTSHHHHHHHHHHHHHHHHHH----TCCCSCEEEESSCHHHHHHHH
T ss_pred eeecCC--CCCCCHHHHHHhCc--------CCCCCCCHHHHHHHHHHHHHHHHHh----CCCCCeEEEEcCcHHHHHHHH
Confidence 444444 34577888877643 344455331 23445555555554 7754 577788888999997
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC-C---CCCCccEEEEcCCCCc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-S---TTSRTDIIFFCSPNNP 226 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-~---~~~~~~~v~i~~p~NP 226 (441)
+..++.+|+.+++..-.+++......... .+ .....+..........+. . ...+++++.+++.+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 155 (377)
T d1vjoa_ 86 IANAVEPGDVVLIGVAGYFGNRLVDMAGR-YG---------ADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETS 155 (377)
T ss_dssp HHHHCCTTCEEEEEESSHHHHHHHHHHHH-TT---------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred HHhccccccccceeeechhhhhhhhhhhh-hc---------ccccccccCCCCcccchhhhhhhhcCcceeeeeeeeecc
Confidence 68889999999998887766432222211 11 234444443322221111 0 1357888888888999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
||...+ +++|.++|+++|.++++|.+++.... +..+.. .+..+++.|..|.++ ++..+|+++..+..+.
T Consensus 156 tg~~~~---i~~i~~~~~~~g~~~~vDa~~~~g~~---~~~~~~----~~~d~~~~s~~K~~~-gp~g~~~~~~~~~~~~ 224 (377)
T d1vjoa_ 156 TGARQP---LEGVGELCREFGTLLLVDTVTSLGGV---PIFLDA----WGVDLAYSCSQKGLG-CSPGASPFTMSSRAIE 224 (377)
T ss_dssp TTEECC---CTTHHHHHHHHTCEEEEECTTTTTTS---CCCTTT----TTCSEEECCSSSTTC-SCSSCEEEEECHHHHH
T ss_pred ceeeec---hhhhhhhhhhccceEEEecchhhhhh---hhcccc----cccceeeeccccccc-CCCEEEEecchhhHHh
Confidence 999999 88999999999999999999873211 222322 234588999999886 4445777777765531
Q ss_pred cC--------Cch-hHHHHHHH--Hh-hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 307 SN--------GYP-VIKDFNRI--VC-TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 307 ~~--------~~~-~~~~~~~~--~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
.. ... ........ .. .....++.....+..+++........+...++.+++.+.+.+.+.+.++....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 304 (377)
T d1vjoa_ 225 KLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHV 304 (377)
T ss_dssp HHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred hhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeec
Confidence 10 000 00000000 01 11112233332222233321112234777788888889999999888765543
Q ss_pred CC---CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE-ee--cCHHHHHHHHHHHHhhC
Q 013521 375 GK---NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS-AF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~---~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls-~~--~~~~~~~~~l~~l~~~l 441 (441)
++ ....+.+.++ +.+..++...|++++||.+..|.. ....+.||+| ++ ++++++++++++|+++|
T Consensus 305 ~~~~rs~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~--~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l 376 (377)
T d1vjoa_ 305 EKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLG--ELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 376 (377)
T ss_dssp CGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCG--GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred ChHhcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCcc--cccCCEEEEecCcCCCCHHHHHHHHHHHHHHh
Confidence 22 2345677776 567888888998889999998864 3345789999 32 47899999999999874
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.75 E-value=3.7e-17 Score=156.75 Aligned_cols=322 Identities=14% Similarity=0.130 Sum_probs=193.8
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCCCc-EEEcCCcHHHHHH-HHHhcCCC
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEGDE-IFISDGAQSDISR-LQMLLGSN 158 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~-I~~t~G~~~al~~-l~~l~~~g 158 (441)
+...++.|++||.+ ...++++. ..-..++|+.+++.+ +++..+ |+++.|+|.+++. +..++.+|
T Consensus 25 P~~~~~~V~~Am~~--------~~~~hr~~ef~~i~~~~r~~L~~ll----~~~~~~~i~~~gsgT~a~ea~~~~l~~~~ 92 (388)
T d2ch1a1 25 PSNCSKRVLTAMTN--------TVLSNFHAELFRTMDEVKDGLRYIF----QTENRATMCVSGSAHAGMEAMLSNLLEEG 92 (388)
T ss_dssp SCCCCHHHHHHTTS--------CCCCTTCHHHHHHHHHHHHHHHHHH----TCCCSCEEEESSCHHHHHHHHHHHHCCTT
T ss_pred CCCCCHHHHHHhCc--------CCCCCCCHHHHHHHHHHHHHHHHHh----CCCCCeEEEEcCcHHHHHHHHHHHhcccc
Confidence 34567888887643 33445543 123345555555554 676554 5567788999997 68889999
Q ss_pred CEEEEeCCCchhhHhH--HHHhccccccccccCccceeEEeecCCCCCccCC-CC---CCCCccEEEEcCCCCccccCCC
Q 013521 159 VTVAVQDPSFPAYIDT--SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LS---TTSRTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 159 d~Vlv~~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~---~~~~~~~v~i~~p~NPtG~~~~ 232 (441)
+.|++..-++.+.... ....+ ...+.+...+......+ .+ ...+++++++++-+|.||...+
T Consensus 93 ~~vl~~~~g~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~ 160 (388)
T d2ch1a1 93 DRVLIAVNGIWAERAVEMSERYG------------ADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP 160 (388)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred ccccccccccccccchhhhhhhc------------ccccccccccccccchhhhhhhhccCCcceeeeeecccccccccc
Confidence 9999988888775433 33334 25555555443222111 11 1357899999888999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccC----
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN---- 308 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~---- 308 (441)
.++|.++|+++|.++++|.+.+.... +..+.. .+.++++.|-.|.++ +.-.+|+++.++..+...
T Consensus 161 ---~~~i~~~~~~~~~~~~vD~~ss~g~~---pid~~~----~~~d~~~~s~~K~~~-gp~G~g~~~~~~~~~~~~~~~~ 229 (388)
T d2ch1a1 161 ---LEGVGQICHQHDCLLIVDAVASLCGV---PFYMDK----WEIDAVYTGAQKVLG-APPGITPISISPKALDVIRNRR 229 (388)
T ss_dssp ---CTTHHHHHHHTTCEEEEECTTTBTTB---CCCTTT----TTCCEEECCCC-CCC-CCSSCEEEEECHHHHHHHHTCS
T ss_pred ---hhhhcchhccccceeeeeeeeccccc---ccchhc----cCceEEEEccccccC-CCCeEEEEeccHHHHHhhhccc
Confidence 77888889999999999999884221 222222 345689999999885 444578888876653110
Q ss_pred --Cch----hHHHHHHH-----HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC--
Q 013521 309 --GYP----VIKDFNRI-----VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG-- 375 (441)
Q Consensus 309 --~~~----~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-- 375 (441)
... ........ .......++.....++...+...............+.........+...++....+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (388)
T d2ch1a1 230 TKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDP 309 (388)
T ss_dssp SCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSG
T ss_pred CccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCH
Confidence 000 00000000 00112233334433333333311111223344444444445555555444433221
Q ss_pred --CCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE-e--ecCHHHHHHHHHHHHhhC
Q 013521 376 --KNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS-A--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 376 --~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls-~--~~~~~~~~~~l~~l~~~l 441 (441)
.....+.+.++ +.+..++...|++++||.+.+|.. ....+.|||| + .++.++++.+++.|+++|
T Consensus 310 ~~rs~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~--~~~~~~~RIs~~g~~~t~edI~~ll~alke~L 379 (388)
T d2ch1a1 310 RHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLG--PTFGKAWRVGIMGECSTVQKIQFYLYGFKESL 379 (388)
T ss_dssp GGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCG--GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHhCCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCc--cccCCEEEEcCCcCCCCHHHHHHHHHHHHHHH
Confidence 12345778886 567788888988888999999864 2235689999 5 347899999999999874
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.72 E-value=4.7e-16 Score=144.38 Aligned_cols=336 Identities=18% Similarity=0.186 Sum_probs=221.5
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHH-hhhCCCCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKF-YKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l-~~~~~~~~~~I~~t~G~~~al~ 149 (441)
..|+|-..++- .++.+.+++...+..... .++. +|....-..+..|.+|.-. .+.|++.--+|-..+|+++.+.
T Consensus 24 ~~l~LiaSEN~--~S~~v~~a~~S~l~nkya-eG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~a 100 (405)
T d1kl1a_ 24 AKIELIASENF--VSRAVMEAQGSVLTNKYA-EGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMA 100 (405)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGGCCC-CEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHH
T ss_pred cCceEeccCCc--CCHHHHHHhcCcccCcCc-CCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHH
Confidence 35888766653 568888888887743221 2222 2322222344444555443 3467888789999999999999
Q ss_pred HHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEEEcCC
Q 013521 150 RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIFFCSP 223 (441)
Q Consensus 150 ~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~i~~p 223 (441)
.+.++++|||+|+..++...+....-......+ .+.+.+..++++++ ...|.++ ..+||+|++-.-
T Consensus 101 v~~all~pGD~im~l~l~~GGHlshg~~~~~~g-------~~~~~~~y~~d~~~-~~ID~d~l~~~a~~~kPklIi~G~S 172 (405)
T d1kl1a_ 101 VYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSG-------VQYNFVAYGVDPET-HVIDYDDVREKARLHRPKLIVAAAS 172 (405)
T ss_dssp HHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHH-------HHSEEEEECBCTTT-CSBCHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHhcCCCCEEEEeecccccccccCccccccc-------eEEEEEEeccchhc-ccccHHHHHHHHHhhCcceEEeccc
Confidence 999999999999999988877643322111111 12477778888653 3455433 378999887654
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
.+|- .++ .+++.++|++.|.+++.|-+|.- +...+. |.|+ .. + .++.+|.+|++ +|.|-|.++++
T Consensus 173 ~y~r--~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~-~~--a---Dvvt~tThKtl--rGPrgg~I~~~ 239 (405)
T d1kl1a_ 173 AYPR--IID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV-PY--A---HFVTTTTHKTL--RGPRGGMILCQ 239 (405)
T ss_dssp SCCS--CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TT--C---SEEEEESSSTT--CCCSCEEEEEC
T ss_pred cccc--ccC---hHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh-hh--h---hheeccccccc--cCCCCceEEec
Confidence 5553 234 78888889999999999999874 444443 3343 22 2 27788999998 69999999998
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeC-CCCce
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLGLKVNG-GKNAP 379 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~ 379 (441)
+++ .+.+.........+.+.+...|+.+.--.+.. ...+...++..++.+.|.+.|.+.|+.+.. ..+..
T Consensus 240 ~~~--------~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H 311 (405)
T d1kl1a_ 240 EQF--------AKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNH 311 (405)
T ss_dssp HHH--------HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSS
T ss_pred chh--------HHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCccc
Confidence 766 34554433333333444444444433321212 345778888889999999999999998864 34567
Q ss_pred EEEEEcCC-CChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEe------ecCHHHHHHHHHHHHhh
Q 013521 380 YVWVQFPG-SSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSA------FGHREYISEACRRLKNF 440 (441)
Q Consensus 380 ~~~~~~~~-~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~------~~~~~~~~~~l~~l~~~ 440 (441)
.+|+++.+ ......+..+|++.||.+. |++.=.+..++.|||+. +-.++++++..+.|.++
T Consensus 312 ~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~ 383 (405)
T d1kl1a_ 312 LLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLV 383 (405)
T ss_dssp EEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 89999952 3345667788888899988 44322233357899995 22578888888887765
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.71 E-value=7.1e-16 Score=145.02 Aligned_cols=214 Identities=18% Similarity=0.179 Sum_probs=150.5
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhcc-ccccccccCcc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQ-AGKFLKETGKY 191 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~ 191 (441)
+....|.+.||+.- ..+..++++++++|+.. ++.++++||.|++....|.+....+...-. .|
T Consensus 59 PT~~~LE~~la~LE------g~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~G--------- 123 (392)
T d1gc0a_ 59 PTLNLLEARMASLE------GGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFG--------- 123 (392)
T ss_dssp HHHHHHHHHHHHHH------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGT---------
T ss_pred hHHHHHHHHHHHHh------CCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCC---------
Confidence 34567777777764 24677888889999987 788999999999999999998777765422 22
Q ss_pred ceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc
Q 013521 192 RNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 192 ~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
+++.+++..+...+... ..+++++|++-+|.|||..+.+ +++|+++|+++|+++++|..|..-... .++ .+
T Consensus 124 i~~~~~d~~d~~~~~~a--i~~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~---~Pl-~~ 194 (392)
T d1gc0a_ 124 VKLRHVDMADLQALEAA--MTPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ---RPL-EL 194 (392)
T ss_dssp CEEEEECTTCHHHHHHH--CCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC---CGG-GG
T ss_pred cccccCCccCHHHHHHh--CCCCCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCcccc---ChH-Hh
Confidence 47777765332122111 1478999999999999999999 999999999999999999999842211 122 12
Q ss_pred CCCcceeEEEecCCcccCC-ccceeEEEEeeccccccCCchhHHH--HHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 272 PGAREVAIEISSFSKFAGF-TGVRLGWTVVPEELRYSNGYPVIKD--FNRIVCTCFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
+-.|++.|.+|.++- ...-.|.++++++.+ ++ +...+.......++.....+.. +.+.+.
T Consensus 195 ----GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~--------~~~r~~~~~~~~G~~~~p~da~ll~r-----gl~TL~ 257 (392)
T d1gc0a_ 195 ----GADLVVHSATKYLSGHGDITAGIVVGSQALV--------DRIRLQGLKDMTGAVLSPHDAALLMR-----GIKTLN 257 (392)
T ss_dssp ----TCSEEEEETTTTTTCSSSCCCEEEEECHHHH--------HHHHHTHHHHHTCCCCCHHHHHHHHH-----HHTTHH
T ss_pred ----CCCEEEEecceeecCCcccccccccchhHHH--------HHHHHHHHHHccCCcCChhhHHHHHh-----ccccHH
Confidence 223999999999863 334467877777663 22 2233444455566665443333 334457
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 013521 349 TVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~ 368 (441)
.+.++..++...+.+.|+++
T Consensus 258 lRm~~~~~nA~~lA~~L~~h 277 (392)
T d1gc0a_ 258 LRMDRHCANAQVLAEFLARQ 277 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 77788889999999999987
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.71 E-value=1.6e-15 Score=142.26 Aligned_cols=216 Identities=18% Similarity=0.173 Sum_probs=149.2
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccce
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN 193 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~ 193 (441)
+-...|.+.+|+.- + .+..++++.+++|+..++.++++||.|++..+.|.+....+...-.+.. ++
T Consensus 49 Pt~~~le~~la~LE----~--~~~a~~fsSGMaAisall~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~g--------i~ 114 (380)
T d1ibja_ 49 PTRDALESLLAKLD----K--ADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG--------VV 114 (380)
T ss_dssp HHHHHHHHHHHHHH----T--CSEEEEESSHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGT--------CE
T ss_pred hHHHHHHHHHHHHc----C--CceEEehhhHHHHHHHHHHhhCCCCEEEEEecccccccchhhhhhcccc--------cc
Confidence 34466777777653 2 3566777777889988888999999999999999998887766433211 36
Q ss_pred eEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC
Q 013521 194 IVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG 273 (441)
Q Consensus 194 v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~ 273 (441)
+.++.....+.+.. ...+++++||+-+|.|||..+.+ +++|+++|+++|+++|+|+.+...... .++. +
T Consensus 115 ~~~~d~~~~~~~~~--ai~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~---~Pl~-~-- 183 (380)
T d1ibja_ 115 VKRVNTTKLDEVAA--AIGPQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLS---RPLE-L-- 183 (380)
T ss_dssp EEEECTTSHHHHHH--HCCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTC---CGGG-T--
T ss_pred ccccCcchHHHHHH--HhccCccEEEecccccccccccc---HHHHHHHHHHcCCeEEeeccccccccc---cccc-c--
Confidence 66665432211111 11478999999999999999999 889999999999999999998742111 1221 1
Q ss_pred CcceeEEEecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHH
Q 013521 274 AREVAIEISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVID 352 (441)
Q Consensus 274 ~~~~~i~i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 352 (441)
+-.|++.|++|.++-.+= =.|.++++++.+ .+.+...+.......++.....+..- .+.+..+.+
T Consensus 184 --GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~-------~~~~~~~~~~~G~~l~p~~a~ll~rg-----l~Tl~lRm~ 249 (380)
T d1ibja_ 184 --GADIVMHSATKFIAGHSDVMAGVLAVKGEKL-------AKEVYFLQNSEGSGLAPFDCWLCLRG-----IKTMALRIE 249 (380)
T ss_dssp --TCSEEEEETTTTTTCSSCCCCEEEEECSHHH-------HHHHHHHHHHTTCBCCHHHHHHHHHH-----HTTHHHHHH
T ss_pred --CCCEEEecccceeccccCccccccccchhhH-------HHHHHhhccccCCcCCHHHHHHHHhc-----chhhhhhHH
Confidence 234999999999874332 246777665543 44555555555555666664444433 344577778
Q ss_pred HHHHHHHHHHHHHHhC
Q 013521 353 YYKENAKIIVDAFQSL 368 (441)
Q Consensus 353 ~~~~~~~~l~~~L~~~ 368 (441)
+..++...+.+.|+++
T Consensus 250 ~~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 250 KQQENARKIAMYLSSH 265 (380)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8889999999999987
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.3e-15 Score=142.13 Aligned_cols=338 Identities=18% Similarity=0.146 Sum_probs=217.7
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHHh-hhCCCCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKFY-KDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l~-~~~~~~~~~I~~t~G~~~al~ 149 (441)
+-|+|--.++ ..++.+.+++...+..... .++. +|....-..+..|.+|.-.. +.|++.-.+|-..+|++..+.
T Consensus 27 ~~i~LiaSEN--~~S~~v~~a~~S~l~nkYa-eG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~a 103 (416)
T d1dfoa_ 27 EHIELIASEN--YTSPRVMQAQGSQLTNKYA-EGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFA 103 (416)
T ss_dssp HSEECCTTCC--CCCHHHHHHHTSGGGGCCC-CEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHH
T ss_pred cCceEecCcc--cCCHHHHHHhcCcccCccc-CCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHH
Confidence 3588876665 2568888888887754321 2222 23222223345555554443 467887778889999999998
Q ss_pred HHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEEEcCC
Q 013521 150 RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIFFCSP 223 (441)
Q Consensus 150 ~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~i~~p 223 (441)
.+.++++|||+|+..++.+.++.......+..+ ++.+.+..+++.+ + ..|++. ..++|+|+.-.-
T Consensus 104 v~~All~pGD~Il~l~l~~GGHlshg~~~~~~g-------~~~~~~~y~~d~~-~-~IDyd~l~~~a~~~kPklIi~G~S 174 (416)
T d1dfoa_ 104 VYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSG-------KLYNIVPYGIDAT-G-HIDYADLEKQAKEHKPKMIIGGFS 174 (416)
T ss_dssp HHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHH-------HHSEEEEECBCSS-S-SBCHHHHHHHHHHHCCSEEEEECS
T ss_pred HHHHhcCCCCeeeeccccccccccccccccccC-------ceEEEEecccCCc-c-CccHHHHHHHHHHhccceEEeccc
Confidence 899999999999999999988755433222211 1246777777653 2 244332 368999887544
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
.+| ..++ .+++.++|++.|.++++|.+|.- +...+. |.|+. . . .++.+|.+|+| +|.|-|.++++
T Consensus 175 ~y~--r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~-~--a---Dvvt~tThKtl--rGPrggiI~~~ 241 (416)
T d1dfoa_ 175 AYS--GVVD---WAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP-H--A---HVVTTTTHKTL--AGPRGGLILAK 241 (416)
T ss_dssp SCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTT-T--S---SEEEEESSSTT--CCCSCEEEEES
T ss_pred ccc--cccC---HHHHHHHHHhcCceEEcchhhhhcceeccccCCccc-c--c---ceeeeehhhcc--cCCCceEEEec
Confidence 444 3445 78888889999999999999874 333332 33332 2 1 28899999998 68999999986
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC-CCCce
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD-GFQALRTVIDYYKENAKIIVDAFQSLGLKVNG-GKNAP 379 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~ 379 (441)
...- .+.+.+.+.......+.+.+...|+.+.--.+ .....+...++..++.+.|.+.|.+.|+++.. ..+.+
T Consensus 242 ~~~~-----~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnH 316 (416)
T d1dfoa_ 242 GGSE-----ELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNH 316 (416)
T ss_dssp SCCH-----HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSS
T ss_pred cchH-----hHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCCc
Confidence 4320 01334433222222233434444433322211 12345778888899999999999999999863 34667
Q ss_pred EEEEEcCC-CChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEe------ecCHHHHHHHHHHHHhh
Q 013521 380 YVWVQFPG-SSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSA------FGHREYISEACRRLKNF 440 (441)
Q Consensus 380 ~~~~~~~~-~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~------~~~~~~~~~~l~~l~~~ 440 (441)
.+++++.+ ..+...+..+|++.||.+. |+..=.+..++.|||+. +-.++++++..+.|.++
T Consensus 317 lvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~ 388 (416)
T d1dfoa_ 317 LFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDV 388 (416)
T ss_dssp EEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 89999963 2345677888889999986 43321223457899995 22578888888877765
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=1.9e-16 Score=151.35 Aligned_cols=321 Identities=11% Similarity=0.038 Sum_probs=182.9
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCCCCC--cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhc---CC
Q 013521 84 QPIPDIITSAMAEHAFALSTVKGYKGYGAE--QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLL---GS 157 (441)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~---~~ 157 (441)
.+.|+.|++||.. ....++.+. ....++++.+.+.+....+.+++.|++|+|+|+++++ +..++ ++
T Consensus 12 ~~v~~~V~~Am~~--------~~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~ 83 (382)
T d2bkwa1 12 IILSGAVQKALDV--------PSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAP 83 (382)
T ss_dssp CCCCHHHHHTTSC--------CCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCS
T ss_pred CCCCHHHHHHhCc--------ccCCCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCC
Confidence 4567888777632 233344321 1122334444443322234467889999999999998 66665 68
Q ss_pred CCEEEEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCC-ccCC-CC---CCCCccEEEEcCCCCccccC
Q 013521 158 NVTVAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENN-FFPD-LS---TTSRTDIIFFCSPNNPTGHA 230 (441)
Q Consensus 158 gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~-~~---~~~~~~~v~i~~p~NPtG~~ 230 (441)
||+|++..-++++.. ..+...+ ..+..+...+.+. ...+ ++ ...+++++++++.+|.||..
T Consensus 84 gd~vlv~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~ 151 (382)
T d2bkwa1 84 NKNVLVVSTGTFSDRFADCLRSYG------------AQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVL 151 (382)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHTT------------CEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEE
T ss_pred CCceEEEEechhhhhhhhhccccc------------cccccccccCCCCccchhHHHHHhhhccchheeeeecccccccc
Confidence 999999988887743 2233334 2444443322221 1111 11 13678999999999999999
Q ss_pred CCHHHHHHHHHHHHHc--CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCccc-CCccceeEEEEeecccccc
Q 013521 231 ATWQQLKKLVEFAKAN--GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFA-GFTGVRLGWTVVPEELRYS 307 (441)
Q Consensus 231 ~~~~~~~~i~~~a~~~--~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-~~~G~r~G~l~~~~~~~~~ 307 (441)
.+ ++++.+.|+++ ++++++|.+.+-.. .|..+.. .+..+++.|..|++ |.+| +|+++.+++.+..
T Consensus 152 ~~---~~~~~~~~~~~~~~~~~~vDa~qs~g~---~pid~~~----~giD~~~~s~~K~l~gP~G--~g~l~vs~~~~~~ 219 (382)
T d2bkwa1 152 SD---LKAISQAIKQTSPETFFVVDAVCSIGC---EEFEFDE----WGVDFALTASQKAIGAPAG--LSISLCSSRFMDY 219 (382)
T ss_dssp CC---HHHHHHHHHHHCTTSEEEEECTTTTTT---SCCCTTT----TTCSEEEEESSSTTCCCSC--EEEEEECHHHHHH
T ss_pred cc---chhhhhhccccccceeeeeeccccccc---ccccccc----cCeeEEeecccccCcCCCc--hhhhhccHHHHhh
Confidence 99 55666666555 59999999987321 1333322 24459999999998 4455 8999998877421
Q ss_pred CCc-----------hhHHHHHH----H---HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 013521 308 NGY-----------PVIKDFNR----I---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL- 368 (441)
Q Consensus 308 ~~~-----------~~~~~~~~----~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 368 (441)
... .....+.. . ......+++.....+...+++.-..+..+...++.++.++.+++.+.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 299 (382)
T d2bkwa1 220 ALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL 299 (382)
T ss_dssp HTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcc
Confidence 000 00001110 0 0112234454444444444432111224566666777788888888764
Q ss_pred CCeeeC---CC--CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE-ee-c-CHHH---HHHHHHHH
Q 013521 369 GLKVNG---GK--NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS-AF-G-HREY---ISEACRRL 437 (441)
Q Consensus 369 g~~~~~---~~--~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls-~~-~-~~~~---~~~~l~~l 437 (441)
++.... .. ....+.+.++ +..++.. +|+++||.+.+|..- ..+.+.+||+ ++ . +.++ +.++++.|
T Consensus 300 ~~~~~~~~~~~~~s~~v~~~~~~--~~~~~~~-~L~~~gi~i~~G~~~-~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i 375 (382)
T d2bkwa1 300 QLTSVSRYPSNMSAHGLTAVYVA--DPPDVIA-FLKSHGVVIAGGIHK-DIGPKYIRIGHMGVTACNKNLPYMKNCFDLI 375 (382)
T ss_dssp CCEESSCSSSTTBCSSCEEEECS--CHHHHHH-HHHHTTEECBCCCCT-TTGGGEEEECCCGGGTSSTTCTHHHHHHHHH
T ss_pred cccccccCchhccCCcEEEEcCC--CHHHHHH-HHHHCCeEEECCCCh-hhcCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 433321 11 1223456665 4556554 456779999988431 2245789999 42 2 3444 56666665
Q ss_pred Hhh
Q 013521 438 KNF 440 (441)
Q Consensus 438 ~~~ 440 (441)
++.
T Consensus 376 ~~~ 378 (382)
T d2bkwa1 376 KLA 378 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.69 E-value=5.7e-15 Score=138.83 Aligned_cols=221 Identities=16% Similarity=0.155 Sum_probs=148.2
Q ss_pred CCCC--CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHH-hcccccc
Q 013521 109 GYGA--EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVI-VGQAGKF 184 (441)
Q Consensus 109 ~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~ 184 (441)
.|+. .+-...|.+.+|+.- ..+..++++++++|+.. ++.++++||+|+++...|.+....+.. +.+.|
T Consensus 56 ~Y~R~~nPT~~~LE~~la~LE------gg~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~G-- 127 (397)
T d1y4ia1 56 IYTRLGNPTTDALEKKLAVLE------RGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFG-- 127 (397)
T ss_dssp CCCTTSCHHHHHHHHHHHHHH------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTT--
T ss_pred eeeCCCCHHHHHHHHHHHHHh------CCccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCc--
Confidence 4543 234455666666653 23567788888889887 789999999999999999887665543 21112
Q ss_pred ccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC
Q 013521 185 LKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS 264 (441)
Q Consensus 185 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~ 264 (441)
+++.+++..+.+.+...+ .+++|+|++-+|.|||..+.+ +++|+++|+++|+++++|..+..-..
T Consensus 128 -------i~~~~vd~~d~~~~~~~i--~~~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~--- 192 (397)
T d1y4ia1 128 -------INVRFVDAGKPEEIRAAM--RPETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYC--- 192 (397)
T ss_dssp -------CEEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT---
T ss_pred -------eEeeccCCCCHHHHHHhc--CCCCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCccc---
Confidence 478877654322221111 378999999999999999999 88999999999999999999874111
Q ss_pred CCcccccCCCcceeEEEecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 343 (441)
..++. + +-.|++.|++|.++-.+= =.|.++++++.+. ..++...+.......++.....+..-
T Consensus 193 ~~Pl~-~----GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~------~~r~~~~~~~~G~~l~p~~a~l~~rg----- 256 (397)
T d1y4ia1 193 QQPLQ-L----GADIVVHSVTKYINGHGDVIGGIIVGKQEFID------QARFVGLKDITGGCMSPFNAWLTLRG----- 256 (397)
T ss_dssp CCGGG-G----TCSEEEEETTTTTTCSSCCCCEEEEECHHHHH------HHHHTHHHHTTCCCCCHHHHHHHHHH-----
T ss_pred Ccchh-c----CCCEEEEehhhhcCCCcceeeeccCCCHHHHH------HHHHHHHHhCcCCcCCHHHHHHHHcC-----
Confidence 11221 1 224999999998863332 2467777766631 01233334444555666664433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 344 FQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
.+-+.-+.++..++...+.+.|+++
T Consensus 257 l~TL~lRm~~~~~nA~~lA~~L~~h 281 (397)
T d1y4ia1 257 VKTLGIRMERHCENALKIARFLEGH 281 (397)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 3345667788889999999999987
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1e-13 Score=130.58 Aligned_cols=214 Identities=12% Similarity=0.154 Sum_probs=147.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHh-ccccccccccCcc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKFLKETGKY 191 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~ 191 (441)
+-...|.+.+|+.- ..+..++++.+++|+.. ++.++++||.|++....|.+....+... ...|
T Consensus 58 Pt~~~le~~la~LE------g~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~G--------- 122 (391)
T d1cl1a_ 58 LTHFSLQQAMCELE------GGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG--------- 122 (391)
T ss_dssp HHHHHHHHHHHHHH------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGT---------
T ss_pred hhHHHHHHHHHHHh------CCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccc---------
Confidence 34456666666653 24688899999999986 7899999999999999999987777653 3222
Q ss_pred ceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCccc
Q 013521 192 RNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDPSPRSIY 269 (441)
Q Consensus 192 ~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~--~~~~ii~De~~~~~~~~~~~~~~~ 269 (441)
+++..++..+...+.. ...+++++|++-+|.|||..+.+ +++|+++|++ +|+++|+|+.+.....- .++
T Consensus 123 i~~~~~d~~d~~~~~~--~i~~~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~---~Pl- 193 (391)
T d1cl1a_ 123 VTTSWFDPLIGADIVK--HLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF---KAL- 193 (391)
T ss_dssp CEEEEECTTCGGGGGG--TCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS---CGG-
T ss_pred cccccccCcccccccc--ccccccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhh---ccc-
Confidence 3677766543222211 11378999999999999999999 7788888866 49999999998742211 122
Q ss_pred ccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 270 EIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 270 ~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
.+ +-+|++.|.+|.++-.+ .=.|.++.+++. .+.+...........++.....+.. +.+.+.
T Consensus 194 ~~----GaDivvhS~TKy~~GhsdvlgG~vv~~~~~--------~~~~~~~~~~~G~~~~p~~a~ll~r-----gl~TL~ 256 (391)
T d1cl1a_ 194 DF----GIDVSIQAATKYLVGHSDAMIGTAVCNARC--------WEQLRENAYLMGQMVDADTAYITSR-----GLRTLG 256 (391)
T ss_dssp GG----TCSEEEEETTTTTTCSSSCCCEEEEECTTT--------HHHHHHHHHHTTCCCCHHHHHHHHH-----HHTTHH
T ss_pred cc----ccceEEeecchhccccccccccceeccccc--------cccchhhhhcccccCCchhhhhhhc-----cchhHH
Confidence 12 22499999999986322 235777776665 3445544555555566665433332 344456
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 013521 349 TVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~ 368 (441)
-+.++..++...+.+.|+++
T Consensus 257 lR~~~~~~nA~~vA~~L~~h 276 (391)
T d1cl1a_ 257 VRLRQHHESSLKVAEWLAEH 276 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 67788888999999999987
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.68 E-value=3.1e-15 Score=140.90 Aligned_cols=216 Identities=10% Similarity=0.121 Sum_probs=148.6
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYR 192 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~ 192 (441)
+-...|.+.||+.. ..+..++++.+++|+.. ++.++++||.|++....|.+....+...-.+.. +
T Consensus 67 Pt~~~LE~~la~LE------gg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~g--------i 132 (398)
T d1qgna_ 67 PTTVVLEEKISALE------GAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMG--------I 132 (398)
T ss_dssp HHHHHHHHHHHHHH------TCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGT--------C
T ss_pred hHHHHHHHHHHHHh------CCceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccc--------c
Confidence 34566777777764 24678888889999987 788999999999999999998777665443211 3
Q ss_pred eeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccC
Q 013521 193 NIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIP 272 (441)
Q Consensus 193 ~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~ 272 (441)
++..++....... ......+++++|++-+|.|||..+.+ +++|+++|+++|+++|+|..+.....- .+ ++
T Consensus 133 ~~~~~~~~~~~~~-~~~~~~~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~---~P---l~ 202 (398)
T d1qgna_ 133 TATVIDPADVGAL-ELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ---KA---LA 202 (398)
T ss_dssp EEEEECSSCHHHH-HHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC---CT---TT
T ss_pred ccccccccchhhh-hhhhccccceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccC---Cc---hh
Confidence 5666553221110 00111378999999999999999999 999999999999999999998731111 11 11
Q ss_pred CCcceeEEEecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHH
Q 013521 273 GAREVAIEISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVI 351 (441)
Q Consensus 273 ~~~~~~i~i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 351 (441)
.+-.|++.|++|.++-.+= =.|.++.++++ ...............++.....+.. +.+-+.-+.
T Consensus 203 --~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~--------~~~~~~~~~~~G~~l~p~~a~ll~r-----gl~TL~lRm 267 (398)
T d1qgna_ 203 --LGADLVLHSATKFLGGHNDVLAGCISGPLKL--------VSEIRNLHHILGGALNPNAAYLIIR-----GMKTLHLRV 267 (398)
T ss_dssp --TTCSEEEECTTTTTTCSSSCCCEEEEECHHH--------HHHHHHHHHHHCCCCCHHHHHHHHH-----HGGGHHHHH
T ss_pred --hCCCEEEEechhhcCcccceeehhhcchhhh--------hhhhhhhcccCCCcCCHHHHHHHHh-----cchHHHHHH
Confidence 1224899999998874332 24666666555 3445555555555566666443333 344457778
Q ss_pred HHHHHHHHHHHHHHHhC
Q 013521 352 DYYKENAKIIVDAFQSL 368 (441)
Q Consensus 352 ~~~~~~~~~l~~~L~~~ 368 (441)
++..++...+.+.|+++
T Consensus 268 ~~~~~nA~~lA~~L~~h 284 (398)
T d1qgna_ 268 QQQNSTALRMAEILEAH 284 (398)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 88899999999999987
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=5.7e-15 Score=138.57 Aligned_cols=216 Identities=13% Similarity=0.184 Sum_probs=147.8
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYR 192 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~ 192 (441)
+-...|.+.+|+.- ..+..++++++++|+.. +..++++||.|++....|.+....+...-.++. .
T Consensus 50 Pt~~~le~~la~LE------gg~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g--------~ 115 (384)
T d1cs1a_ 50 PTRDVVQRALAELE------GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC--------Y 115 (384)
T ss_dssp HHHHHHHHHHHHHH------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTS--------C
T ss_pred HHHHHHHHHHHHHh------CCCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccc--------c
Confidence 45567777777764 24678888888999986 788999999999999999887666665433322 3
Q ss_pred eeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccC
Q 013521 193 NIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIP 272 (441)
Q Consensus 193 ~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~ 272 (441)
++.++...+...+. ....+++++||+-+|.|||..+.+ +++|+++|+++|+++|+|..+..... ..++. +
T Consensus 116 ~~~~~d~~d~~~~~--~~~~~~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~---~~Pl~-~- 185 (384)
T d1cs1a_ 116 RVLFVDQGDEQALR--AALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPAL---QNPLA-L- 185 (384)
T ss_dssp EEEEECTTCHHHHH--HHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT---CCGGG-G-
T ss_pred ccccccCCCHHHHH--hhccccccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCccc---ccccc-c-
Confidence 55555432211110 011478999999999999999999 88999999999999999999863111 11221 1
Q ss_pred CCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHH
Q 013521 273 GAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVI 351 (441)
Q Consensus 273 ~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 351 (441)
+-.|++.|.+|.++-.| .=.|.++++++.+ .+.+...+.......++.....+.. +.+.+.-+.
T Consensus 186 ---GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~-------~~~~~~~~~~~G~~~~p~~a~ll~r-----gL~TL~lRm 250 (384)
T d1cs1a_ 186 ---GADLVLHSCTKYLNGHSDVVAGVVIAKDPDV-------VTELAWWANNIGVTGGAFDSYLLLR-----GLRTLVPRM 250 (384)
T ss_dssp ---TCSEEEEETTTTTTCSSCCCCEEEEESSHHH-------HHHHHHHHHHHTCBCCHHHHHHHHH-----HHTTHHHHH
T ss_pred ---CCCEEEEccccccccCCCcccccccCCchhh-------hhhhhhhhhhhhhccccccHHHHhh-----ccchhHHHH
Confidence 23499999999886322 2346777766553 3445544555555566665443333 344456677
Q ss_pred HHHHHHHHHHHHHHHhC
Q 013521 352 DYYKENAKIIVDAFQSL 368 (441)
Q Consensus 352 ~~~~~~~~~l~~~L~~~ 368 (441)
++..++...+.+.|+++
T Consensus 251 ~~~~~nA~~lA~~L~~h 267 (384)
T d1cs1a_ 251 ELAQRNAQAIVKYLQTQ 267 (384)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcccC
Confidence 88889999999999987
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=1.6e-14 Score=137.52 Aligned_cols=301 Identities=17% Similarity=0.124 Sum_probs=188.8
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEEe
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAVQ 164 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv~ 164 (441)
+++-++++.+.++. +. |...+...++.+.+|+++ +. +..++|+++|+|+.+ +.++ +++||+|+++
T Consensus 11 ~~~~~~~~~~~~~~-----~~--~~~G~~v~~~E~~la~~~----g~--~~ai~~~sgt~Al~~al~al~~~~gdeVi~~ 77 (376)
T d1mdoa_ 11 GAEELAAVKTVLDS-----GW--ITTGPKNQELEAAFCRLT----GN--QYAVAVSSATAGMHIALMALGIGEGDEVITP 77 (376)
T ss_dssp CHHHHHHHHHHHHH-----TC--CSSSHHHHHHHHHHHHHH----CC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CHHHHHHHHHHHhc-----CC--CcCCHHHHHHHHHHHHHH----Cc--CeEEEeCCHHHHHHHHHHHhCCCCCCEEEEe
Confidence 45666788888763 22 223345788999999997 43 577788888999887 6666 7999999999
Q ss_pred CCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHH
Q 013521 165 DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKL 239 (441)
Q Consensus 165 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i 239 (441)
..+|++....+...| ..++.++++++ .+..+++. .+++++|++++ ..|...+ +++|
T Consensus 78 ~~~~~~~~~ai~~~g------------~~pv~~d~~~~-~~~~d~~~l~~~i~~~tkaIi~~h---~~G~~~~---~~~i 138 (376)
T d1mdoa_ 78 SMTWVSTLNMIVLLG------------ANPVMVDVDRD-TLMVTPEHIEAAITPQTKAIIPVH---YAGAPAD---LDAI 138 (376)
T ss_dssp SSSCHHHHHHHHHTT------------CEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECCBC---GGGCCCC---HHHH
T ss_pred cccccccccchhccc------------cceeeeccccc-ccCCCHHHHHHhcCCCCeEEEEeC---CCCCccc---hhHH
Confidence 999999999999999 58899999875 34445432 47899988754 5787777 8889
Q ss_pred HHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecC--CcccCCccceeEEEEeeccccccCCchhHHHHH
Q 013521 240 VEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSF--SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFN 317 (441)
Q Consensus 240 ~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 317 (441)
.++|+++|++||+|.+++...... ..... ..+ +.+.|| +|.++ +| .-|.++++++.+ .+.+.
T Consensus 139 ~~i~~~~~i~vIeD~a~a~g~~~~-~~~~g----~~g--~~~~Sf~~~K~l~-~g-~GG~i~t~~~~l-------~~~~~ 202 (376)
T d1mdoa_ 139 YALGERYGIPVIEDAAHATGTSYK-GRHIG----ARG--TAIFSFHAIKNIT-CA-EGGIVVTDNPQF-------ADKLR 202 (376)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEET-TEETT----SSS--EEEEECCTTSSSC-SS-SCEEEEESCHHH-------HHHHH
T ss_pred HHHHHhcCceEEeccchhccCeeC-Ceecc----ccc--CccccCCCcCCCC-CC-CCCEEEEechhH-------HHHHH
Confidence 999999999999999998533211 11111 122 234455 69886 33 358888877764 23333
Q ss_pred HHHhhh-----------------------cC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCC-ee
Q 013521 318 RIVCTC-----------------------FN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGL-KV 372 (441)
Q Consensus 318 ~~~~~~-----------------------~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~ 372 (441)
..+... .+ ..+.+........ ...+++..++.+++++.+.+.|.+... ..
T Consensus 203 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~q-----L~~~~~~~~~r~~~~~~~~~~L~~~~~~~~ 277 (376)
T d1mdoa_ 203 SLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQ-----LQKLDALNARRAAIAAQYHQAMADLPFQPL 277 (376)
T ss_dssp HHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHH-----HHTHHHHHHHHHHHHHHHHHHHHTSSCEEC
T ss_pred hhcccCCcccccccccccccccccchhcccccccchhhhhhhhhh-----hhhhhHHHHHHhhhhhhhhhhccccccccc
Confidence 222111 01 1112221111111 234466667777888888899987733 22
Q ss_pred eCCCC----ceE-EEEEcC----CCChHHHHHHHHHhcCeEEeCCCC-----------cCCC--------CCCeEEEEee
Q 013521 373 NGGKN----APY-VWVQFP----GSSSWDVFAEILEKTHILTIPGSG-----------FGPG--------GNEHIRVSAF 424 (441)
Q Consensus 373 ~~~~~----~~~-~~~~~~----~~~~~~~~~~ll~~~gi~v~pg~~-----------f~~~--------~~~~iRls~~ 424 (441)
..... .++ ..+.+. .....++.+.| +++||.+++... |... ..+.|.|-+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L-~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~ 356 (376)
T d1mdoa_ 278 SLPSWEHIHAWHLFIIRVDEARCGITRDALMASL-KTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLF 356 (376)
T ss_dssp CCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHH-HHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCC
T ss_pred ccccccccccccccccccccccchhhHHHHHHHH-HHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCC
Confidence 22111 112 222222 12334566665 556998875421 0000 0345776653
Q ss_pred c--CHHHHHHHHHHHHhhC
Q 013521 425 G--HREYISEACRRLKNFL 441 (441)
Q Consensus 425 ~--~~~~~~~~l~~l~~~l 441 (441)
. +.++++..++.|++++
T Consensus 357 ~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 357 PDMTESDFDRVITALHQIA 375 (376)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 3 7899999999998863
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.67 E-value=7.5e-15 Score=142.69 Aligned_cols=325 Identities=15% Similarity=0.100 Sum_probs=196.9
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
-+|||-......+..+..+.++ . . +--.|+.++...+|.+.+|+++ |. +.++++++++.|..+ +
T Consensus 43 v~iDl~sDs~t~am~~~~~aa~----~-~----GDd~Y~~dpt~~~lE~~~a~l~----G~--e~al~~~SGt~An~~a~ 107 (456)
T d1c7ga_ 43 IYIDLLTDSGTNAMSDKQWAGM----M-I----GDEAYAGSENFYHLEKTVKELF----GF--KHIVPTHQGRGAENLLS 107 (456)
T ss_dssp CSEECSCSSSCCCEEHHHHHHT----T-S----CCCCSSSCHHHHHHHHHHHHHH----CC--SEEEEESSHHHHHHHHH
T ss_pred eeeEcccCCCcccchHHHHHHH----h-c----cchhccCCchHHHHHHHHHHHh----CC--CeEEECCCHHHHHHHHH
Confidence 4788887766554455444332 1 1 2225888888999999999997 54 577888888888877 6
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC------CC--CccCCCCC---------CCC
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP------EN--NFFPDLST---------TSR 214 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~------~~--~~~~~~~~---------~~~ 214 (441)
..++++||+|+.... +..........|. ..+.+..+. .+ ....|+++ ..+
T Consensus 108 ~~l~~~Gd~Vi~~~~-f~~~~~~i~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~ 174 (456)
T d1c7ga_ 108 QLAIKPGQYVAGNMY-FTTTRFHQEKNGA------------TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAEN 174 (456)
T ss_dssp HHHCCTTEEEEESSC-CHHHHHHHHHTTE------------EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGG
T ss_pred HHhcCCCCeEecCcc-hHHHHHHHHHcCc------------eeeeccccccccccccCCccccCCHHHHHHHhhhcCCcc
Confidence 778999999987665 3333344455552 333333211 00 11222221 134
Q ss_pred ccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCcEEEEcccccccc--c-----CC-CCCccccc----CCCcceeEEE
Q 013521 215 TDIIFFCSPNNPT-GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI--T-----DP-SPRSIYEI----PGAREVAIEI 281 (441)
Q Consensus 215 ~~~v~i~~p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~--~-----~~-~~~~~~~~----~~~~~~~i~i 281 (441)
+.++++.+|+|+. |.++|.+++++|.++|++||+.+++|+++.... + .+ ...++.++ .+.- .++.
T Consensus 175 ~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~a--d~~s 252 (456)
T d1c7ga_ 175 IAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYA--DGCT 252 (456)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTC--SEEE
T ss_pred ceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhcccccccc--ccEE
Confidence 5678888999986 588999999999999999999999999875211 0 00 11222221 1111 2566
Q ss_pred ecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhh-----cCCCcHHHHHHHHHhcCC-CcHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTC-----FNGASNIVQAGGLACLSP-DGFQALRTVIDYYK 355 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~ 355 (441)
.|++|.++.++ -|+++++++.+ .++.+...... ....+.....++...+.+ .. ....++..
T Consensus 253 ~s~~K~~~~~~--GG~i~~~~~~l-------~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~----~~~l~~r~ 319 (456)
T d1c7ga_ 253 MSGKKDCLVNI--GGFLCMNDEEM-------FSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ----YEYIEHRV 319 (456)
T ss_dssp EETTTTTCCSS--CEEEEESCHHH-------HHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC----HHHHHHHH
T ss_pred Eeccccccccc--eeEEEcCCHHH-------HHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcC----HHHHHHHH
Confidence 78999987442 37888777654 33333222111 111222222222222221 11 12233345
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCceEEEEEcC----C-----CChHHHHHHHHHhcCeEEeCCCCc--C--C-------CC
Q 013521 356 ENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP----G-----SSSWDVFAEILEKTHILTIPGSGF--G--P-------GG 415 (441)
Q Consensus 356 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~ll~~~gi~v~pg~~f--~--~-------~~ 415 (441)
++.++|.+.|.+.|+.+..+.+++.++++.. . ....++...++.+.||...+...+ + + ..
T Consensus 320 ~~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~ 399 (456)
T d1c7ga_ 320 KQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPK 399 (456)
T ss_dssp HHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCS
T ss_pred HHHHHHHHHHHhccCCcccCCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCc
Confidence 5668899999999988887778888877632 1 234566777777889976543221 1 1 12
Q ss_pred CCeEEEEee---cCHHHHHHHHHHHHhh
Q 013521 416 NEHIRVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 416 ~~~iRls~~---~~~~~~~~~l~~l~~~ 440 (441)
...+||++. .+.++++..++.|+++
T Consensus 400 ~e~vRLaip~~~~T~e~iD~Vae~i~~v 427 (456)
T d1c7ga_ 400 LETVRLTIPRRVYTYAHMDVVADGIIKL 427 (456)
T ss_dssp CCEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred cceEEEecCcccCCHHHHHHHHHHHHHH
Confidence 346999974 2789999998888764
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.66 E-value=2.3e-15 Score=146.31 Aligned_cols=288 Identities=14% Similarity=0.131 Sum_probs=173.7
Q ss_pred HHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh--cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEe
Q 013521 121 TAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML--LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYM 197 (441)
Q Consensus 121 ~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v 197 (441)
..+..++.+..+.+.....+..|+++++.+ +++. ..+++.|+++.-.|+++...+..+| ..++.+
T Consensus 116 ~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g------------~~~~~v 183 (434)
T d2z67a1 116 NKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVG------------MNMRLV 183 (434)
T ss_dssp HHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTT------------CEEEEE
T ss_pred HHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhC------------CcceEE
Confidence 333344445566665566666666666654 4433 3478999999999999999998888 355555
Q ss_pred ecCCC-CCccCCCCC----------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC--CC
Q 013521 198 NCRPE-NNFFPDLST----------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD--PS 264 (441)
Q Consensus 198 ~~~~~-~~~~~~~~~----------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~--~~ 264 (441)
+...+ .....|+++ ..++.+|++++|++++|...+ +++|+++|++||+++++|++|+.+... ..
T Consensus 184 ~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~ 260 (434)
T d2z67a1 184 ETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEK 260 (434)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHH
T ss_pred EeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhcccc
Confidence 43221 122333221 246777888899999999988 889999999999999999999743211 00
Q ss_pred CCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF 344 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 344 (441)
+.+... .+..+++.|++|.++ .+...|++...++.. .+.+...........+.....++...+. .
T Consensus 261 ~~~~~~----~~~D~~~~s~hK~l~-~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~l~~~~---~ 325 (434)
T d2z67a1 261 LKKAFK----YRVDAVVSSSDKNLL-TPIGGGLVYSTDAEF-------IKEISLSYPGRASATPVVNTLVSLLSMG---S 325 (434)
T ss_dssp HHHHHT----SCCSEEEEEHHHHHC-CCSSCEEEEESCHHH-------HHHHHTTSCSCBCSHHHHHHHHHHHHHH---H
T ss_pred cccccc----CCcceEEEcCccccc-cCCCccccccCcHHH-------HHHHHhhcccccccchHHHHHHHHHHHH---H
Confidence 111111 123488999999887 555667777665542 3333322222222222222222222222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEe----CCCCc-----
Q 013521 345 QALRTVIDYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTI----PGSGF----- 411 (441)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f----- 411 (441)
+.++...++..++++++.+.|+++ +..+...+....+.+.+. .+..++...|. +.||... +...+
T Consensus 326 ~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~-~~~~~l~~~L~-~~gI~g~~v~~~l~~~g~~~~ 403 (434)
T d2z67a1 326 KNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVN-SDPVEIAAKLY-NLRVTGPRGIKKTDHFGNCYL 403 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECS-SCHHHHHHHHH-HTTEESCEEECTTCHHHHTCS
T ss_pred hcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecC-CCHHHHHHHHH-HcCCeeeehhhhccccCeeee
Confidence 344556666666677777666653 666655444444444443 34556666655 4588532 22211
Q ss_pred CCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 412 GPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 412 ~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.....+++|+++ ..++++++.++++|+++
T Consensus 404 ~~~~~~~l~~~~s~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 404 GTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp SCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred cccCCCeEEEecCCCCCHHHHHHHHHHHhcC
Confidence 112357899986 45899999999999874
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=2.2e-14 Score=135.86 Aligned_cols=254 Identities=13% Similarity=0.114 Sum_probs=159.0
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccce
Q 013521 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN 193 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~ 193 (441)
-...|.+.||+.- ..+..++++++++|+.. ++.++++||+|++....|.+....+...-.+.. ++
T Consensus 59 T~~~LE~~la~LE------~~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~g--------i~ 124 (421)
T d2ctza1 59 TVDVLEKRLAALE------GGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG--------IE 124 (421)
T ss_dssp HHHHHHHHHHHHH------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTT--------CE
T ss_pred HHHHHHHHHHHHh------CCCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhcc--------cc
Confidence 4456666666653 24667788888888886 789999999999999999887776654322111 46
Q ss_pred eEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccc--ccccCCCCCccccc
Q 013521 194 IVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA--AYITDPSPRSIYEI 271 (441)
Q Consensus 194 v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~--~~~~~~~~~~~~~~ 271 (441)
+.+++.+.... .......+++++|++-+|.|||..+.+ +++|+++|+++|+++|+|+.+. ++.. .++ .+
T Consensus 125 ~~~~d~~~~~~-~~~~~~~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~----~Pl-~~ 195 (421)
T d2ctza1 125 VRFTSREERPE-EFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLL----RPL-AW 195 (421)
T ss_dssp EEECCTTCCHH-HHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSC----CGG-GG
T ss_pred ceecccccCcc-hhccccCCCceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceec----ccc-cc
Confidence 66665432111 101112478999999999999999999 9999999999999999999986 2221 122 11
Q ss_pred CCCcceeEEEecCCcccCCccce-eEEEEeeccccccCC--------------chhHHH----------HHHHHhhhcCC
Q 013521 272 PGAREVAIEISSFSKFAGFTGVR-LGWTVVPEELRYSNG--------------YPVIKD----------FNRIVCTCFNG 326 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G~r-~G~l~~~~~~~~~~~--------------~~~~~~----------~~~~~~~~~~~ 326 (441)
+-.|++.|.+|.++-.|-- .|.++.+++.+.... .+..+. ...........
T Consensus 196 ----GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 271 (421)
T d2ctza1 196 ----GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQA 271 (421)
T ss_dssp ----TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCC
T ss_pred ----CCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCC
Confidence 2349999999998743333 467776655432100 000011 01111223444
Q ss_pred CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CC-eeeCC-----------------CCceEEEEEcCC
Q 013521 327 ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GL-KVNGG-----------------KNAPYVWVQFPG 387 (441)
Q Consensus 327 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~-----------------~~~~~~~~~~~~ 387 (441)
.++.....+.. +.+-+.-+.++..++...+.+.|+++ .+ ++.-| ..|..+.+.+.+
T Consensus 272 ~sP~~a~l~~r-----gl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~ 346 (421)
T d2ctza1 272 LGPFEAWVVLL-----GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKG 346 (421)
T ss_dssp CCHHHHHHHHH-----HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred CCHHHHHHHhc-----CCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecC
Confidence 66665433333 33445677788889999999999987 33 22211 125567788763
Q ss_pred CChHHHHHHHHHhcC
Q 013521 388 SSSWDVFAEILEKTH 402 (441)
Q Consensus 388 ~~~~~~~~~ll~~~g 402 (441)
+.+.+.++++.-.
T Consensus 347 --~~~~a~~f~~~L~ 359 (421)
T d2ctza1 347 --GYEAAKRFISRLK 359 (421)
T ss_dssp --HHHHHHHHHHTCS
T ss_pred --CHHHHHHHHHcCC
Confidence 4455555555533
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.65 E-value=1.2e-14 Score=142.26 Aligned_cols=302 Identities=13% Similarity=0.017 Sum_probs=168.0
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGK 190 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~ 190 (441)
|..-..++++.+|+++ |.+ +-+++++|++++..+ +..+++|||+|+++..+|.+....+..++..+
T Consensus 64 ~~~~i~eae~~~A~~~----ga~-~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~-------- 130 (462)
T d1c4ka2 64 HEGPAVAAEKHAARVY----NAD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGR-------- 130 (462)
T ss_dssp TBTHHHHHHHHHHHHT----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCE--------
T ss_pred CCHHHHHHHHHHHHHh----CCC-eEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCC--------
Confidence 4445678899999985 643 455566777777665 78889999999999999999877665554321
Q ss_pred cceeEEeecCCCCCcc-C-----------------CCC--CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEE
Q 013521 191 YRNIVYMNCRPENNFF-P-----------------DLS--TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSII 250 (441)
Q Consensus 191 ~~~v~~v~~~~~~~~~-~-----------------~~~--~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~i 250 (441)
..+...+.++.+... . +++ ...++.++++...+|-+|.+.+ +++|+++|++||+++
T Consensus 131 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l 206 (462)
T d1c4ka2 131 -PVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYI 206 (462)
T ss_dssp -EEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEE
T ss_pred -ceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEE
Confidence 133334444332110 0 000 1234555555555566999999 889999999999999
Q ss_pred EEcccccccccC-CC-CCccccc----CCCcceeEEEecCCcccCCccceeEEEEeeccccccCCc-hhHHHHHHHHhhh
Q 013521 251 VYDSAYAAYITD-PS-PRSIYEI----PGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGY-PVIKDFNRIVCTC 323 (441)
Q Consensus 251 i~De~~~~~~~~-~~-~~~~~~~----~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~-~~~~~~~~~~~~~ 323 (441)
++|++|+..... +. +.+.... ....+.++++.|++|++|.++ ..+++...+..+..... .....+.+.....
T Consensus 207 ~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~-~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (462)
T d1c4ka2 207 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS-QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLF 285 (462)
T ss_dssp EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT-TCEEEEEECGGGTTSTTCCCHHHHHHHHHHH
T ss_pred EEechhhccccccCcCCcchhhccccccccCCccEEEEecCccccccc-ceEEEEeccccccccchhhhHHHHHHhhhhc
Confidence 999999853322 11 2122111 011234699999999997433 33444455544321110 0012222221111
Q ss_pred -cCCCcHHHHH---HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCee-eC-----------------------
Q 013521 324 -FNGASNIVQA---GGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKV-NG----------------------- 374 (441)
Q Consensus 324 -~~~~~~~~~~---a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~----------------------- 374 (441)
..+++..... ++...+. ....+++.++..++.+.+++.+.+. +... ..
T Consensus 286 ~t~sp~~~~~asl~~a~~~~~---~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 362 (462)
T d1c4ka2 286 MSTSPFYPMYAALDVNAAMQE---GEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDY 362 (462)
T ss_dssp SCSSCCHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGG
T ss_pred ccCCchHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccch
Confidence 2222222222 2222222 1233555666667777777777665 2110 00
Q ss_pred ----C----------CCceE------EEEEcCCC-----------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe
Q 013521 375 ----G----------KNAPY------VWVQFPGS-----------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA 423 (441)
Q Consensus 375 ----~----------~~~~~------~~~~~~~~-----------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~ 423 (441)
+ ....+ +.+..++. .+...+...|+++||.+.. .+.+.||+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~------~~~~~i~~~~ 436 (462)
T d1c4ka2 363 WRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEK------SDLNSILFLM 436 (462)
T ss_dssp GBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSE------ECSSEEEEEC
T ss_pred hccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeec------cCCCeEEEEe
Confidence 0 00001 33433311 1233444556678986532 1356899997
Q ss_pred --ecCHHHHHHHHHHHHhh
Q 013521 424 --FGHREYISEACRRLKNF 440 (441)
Q Consensus 424 --~~~~~~~~~~l~~l~~~ 440 (441)
+.++++++.+++.|+++
T Consensus 437 s~~~T~edid~li~aL~ei 455 (462)
T d1c4ka2 437 TPAETPAKMNNLITQLLQL 455 (462)
T ss_dssp CTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 45899999999999875
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.2e-14 Score=140.45 Aligned_cols=347 Identities=8% Similarity=0.022 Sum_probs=197.5
Q ss_pred CCCCeEEeCCC--CCCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcH
Q 013521 70 PDARLIRLGIG--DTTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g--~~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~ 145 (441)
.+++++|+..| ...+. .+|.+.+++.+.+..... .. ......+....+|+.+.+..+-+ .+.++++++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~---~~---~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs 111 (425)
T d1sffa_ 38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSH---TC---FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGS 111 (425)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSC---CC---TTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCC---cc---cccccCcHHHHHHHHHHhhhhhcccceeeeecccc
Confidence 35678888766 33333 678999999998875321 11 11122334445566555433322 46889999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHh-cccccccc-ccCccceeEEeecC--CCCCccCC----------
Q 013521 146 SDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKFLK-ETGKYRNIVYMNCR--PENNFFPD---------- 208 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~-~~~~~~~v~~v~~~--~~~~~~~~---------- 208 (441)
+|... + .........|+....+|++........ |....... ...........+.. ........
T Consensus 112 eA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (425)
T d1sffa_ 112 EAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFK 191 (425)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHH
T ss_pred chhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHH
Confidence 99876 3 222334568899999999875555443 32110000 00000011111111 01000000
Q ss_pred -CCCCCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC
Q 013521 209 -LSTTSRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285 (441)
Q Consensus 209 -~~~~~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 285 (441)
.....++.+++ ..| +...|. ..+++.+++|.++|++||+++|.||++..+...+.......+.-.|| +.+++
T Consensus 192 ~~~~~~~vaavi-~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PD----i~~~g 266 (425)
T d1sffa_ 192 NDAAPEDIAAIV-IEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPD----LTTFA 266 (425)
T ss_dssp HTCCGGGEEEEE-ECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCS----EEEEC
T ss_pred hcccccceEEEE-ecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCcc----ceecc
Confidence 00113444544 566 444565 46899999999999999999999999997544443322223322455 44599
Q ss_pred cccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHH
Q 013521 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDA 364 (441)
Q Consensus 286 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~ 364 (441)
|.+| .|+.+|.+++++++.. .+.......+++.++++..|+.+.|+.-.. ...++..+.-+..++.+.+.
T Consensus 267 K~l~-gG~P~~av~~~~~i~~--------~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~ 337 (425)
T d1sffa_ 267 KSIA-GGFPLAGVTGRAEVMD--------AVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAI 337 (425)
T ss_dssp GGGG-TSSCCEEEEEEHHHHT--------TSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccC-CCcceEEEEEcHHHHH--------hhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Confidence 9998 8999999999988742 222222334456788899988888873211 12233333333333444444
Q ss_pred HHhCCCeeeCCCCceEEEEEcC-----CCC----hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHH
Q 013521 365 FQSLGLKVNGGKNAPYVWVQFP-----GSS----SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEA 433 (441)
Q Consensus 365 L~~~g~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~ 433 (441)
++++++.......|....+.+. ... ...+..+++++ ||.+.++.. ..+.||++ +..++++++++
T Consensus 338 ~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~g~----~~n~i~~~PpL~it~~eid~~ 412 (425)
T d1sffa_ 338 AEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGP----YYNVLRILVPLTIEDAQIRQG 412 (425)
T ss_dssp HHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEEST----TSCEEEECCCTTCCHHHHHHH
T ss_pred HhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHC-CCEEeccCC----CCCEEEEECCCCCCHHHHHHH
Confidence 4555442221124555555552 111 13455666655 999887532 24679998 45689999999
Q ss_pred HHHHHhhC
Q 013521 434 CRRLKNFL 441 (441)
Q Consensus 434 l~~l~~~l 441 (441)
+++|+++|
T Consensus 413 l~~l~~al 420 (425)
T d1sffa_ 413 LEIISQCF 420 (425)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.64 E-value=1.2e-14 Score=137.65 Aligned_cols=333 Identities=12% Similarity=0.090 Sum_probs=181.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCC-CCCCCCC-CcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK-GYKGYGA-EQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~-~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~al~ 149 (441)
..+||+-|. .+.|+.|+++|.+.+.++.+.+ +.+..++ ..-..++-+.+.+.+.+.++.+.+ .|++++|++.+..
T Consensus 3 ~~~~F~pGP--~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ 80 (361)
T d2c0ra1 3 RAYNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQF 80 (361)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHH
T ss_pred CCcccCCCC--cCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHH
Confidence 357787663 4578999999999776543211 1111111 223344444444444444577544 7888888877654
Q ss_pred -H-HHHhcCCCCEEEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC-CCCccEEEEcCC
Q 013521 150 -R-LQMLLGSNVTVAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST-TSRTDIIFFCSP 223 (441)
Q Consensus 150 -~-l~~l~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~-~~~~~~v~i~~p 223 (441)
+ +..+..+|+.+++..-+..+ +..++...| ..++.+..+......++ ++. ....+...+
T Consensus 81 ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--- 145 (361)
T d2c0ra1 81 AMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG------------DTHVAASSEASNYMTLPKLQEIQLQDNAAYL--- 145 (361)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS------------CEEEEEECGGGTTCSCCCGGGCCCCTTEEEE---
T ss_pred HHHHhccccCCCceEEEeechhhhhhhhhhhhcC------------ceeeeeccccccccchhhhhhhcccCcceEE---
Confidence 4 46677889988876654433 244445555 36666666554333332 222 233344343
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
+|.||.+.+ ..+|.++|+++|+++++|.+.+- ...+..+..+ + +.+.|.+|.++.+|.- ++++..+.
T Consensus 146 ~~~tg~~~~---~~~i~~~~~~~~al~~vDavss~---g~~~id~~~~----d--i~~~s~~k~~~~~~~~-~~~~~~~~ 212 (361)
T d2c0ra1 146 HLTSNETIE---GAQFKAFPDTGSVPLIGDMSSDI---LSRPFDLNQF----G--LVYAGAQKNLGPSGVT-VVIVREDL 212 (361)
T ss_dssp EEESEETTT---TEECSSCCCCTTSCEEEECTTTT---TSSCCCGGGC----S--EEEEETTTTTCCSSCE-EEEEEGGG
T ss_pred EEeccccee---cceEEEeeccCCceEEEEeeccc---cccccccccc----e--eEEEecccccccccCc-EEEEEhHH
Confidence 678999988 56778889999999999999873 2223333332 2 5566789999876633 33333333
Q ss_pred ccccCCch----hHHHHHHHHhhhcCCCcHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHhC-CC-eeeCC-
Q 013521 304 LRYSNGYP----VIKDFNRIVCTCFNGASNIVQAGGLACLS-PDGFQALRTVIDYYKENAKIIVDAFQSL-GL-KVNGG- 375 (441)
Q Consensus 304 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~- 375 (441)
........ ....+...... ....+......+..... ............+.+.++..+....... .. .....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (361)
T d2c0ra1 213 VAESPKHLPTMLRYDTYVKNNSL-YNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDV 291 (361)
T ss_dssp SSSCCTTSCGGGCHHHHHHTTTC-SSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCG
T ss_pred hhhCccccccccccccccccccc-cccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCCh
Confidence 22111000 01111111111 11122222111111111 0001122445555555566666665554 22 22111
Q ss_pred --CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 376 --KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 376 --~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
.....+.+.++.....+.+...|+++||.+.+|... . +.||||+.. +.|+++++++.|+++
T Consensus 292 ~~rS~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~--~--g~~RIs~~~~~~~edv~~Lv~~l~~~ 356 (361)
T d2c0ra1 292 DSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRS--V--GGLRASIYNAVPYESCEALVQFMEHF 356 (361)
T ss_dssp GGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTT--T--CSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hhccceEEEEECCCcccHHHHHHHHHHCCCEEecCCCc--C--CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 123457777764333344455567789999998532 1 249999744 899999999999875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=8e-15 Score=139.53 Aligned_cols=335 Identities=14% Similarity=0.126 Sum_probs=206.4
Q ss_pred CCCCeEEeCCC--CCCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIG--DTTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g--~~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.+++++|+..+ ...+. .+|.+.+++.+.+.... .. +..-..+.+..+++.+........+.+.+++++++
T Consensus 35 dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~---~~----~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGse 107 (387)
T d1vefa1 35 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLM---AM----PQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTE 107 (387)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCC---CC----CTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHH
T ss_pred CCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhc---cc----ccccCCchHHHHHHHhhhhccccceeeccccCchH
Confidence 35678887653 33332 57899999999887632 11 11112345666666665433334467999999999
Q ss_pred HHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHhccc----cccccccCccceeEEeecCCCCCccCCCCCCCCccEEE
Q 013521 147 DISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIVGQA----GKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIF 219 (441)
Q Consensus 147 al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~----~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~ 219 (441)
|+.. + .........|+....+|++....+...... ..+.+.. ..+..+|.++.+.+. ... .+++.+|+
T Consensus 108 A~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~---~~~~~~p~~d~~~l~-~~~-~~~iAavi 182 (387)
T d1vefa1 108 ANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLV---EPVEFIPYNDVEALK-RAV-DEETAAVI 182 (387)
T ss_dssp HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCS---SCEEEECTTCHHHHH-HHC-CTTEEEEE
T ss_pred HHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCC---CCceEeCCCCHHHHH-Hhc-CCCeEEEE
Confidence 9886 4 223445578999999998865444443321 1111111 245555543211110 011 24566655
Q ss_pred EcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 220 FCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 220 i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
..| +.-.|. ..+++.+++|.++|++||+++|.||+...|...+.......++-.|| +-+++|.++ .|+-++.
T Consensus 183 -~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PD----i~~~gK~l~-gG~~~~~ 256 (387)
T d1vefa1 183 -LEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD----ILTLAKALG-GGVPLGV 256 (387)
T ss_dssp -ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----EEEECGGGG-TTSSCEE
T ss_pred -EECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCc----eeeecccCC-CCccccc
Confidence 477 444565 47889999999999999999999999987744443322333333455 345899998 8888898
Q ss_pred EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC---CeeeC
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG---LKVNG 374 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~~~~~ 374 (441)
+++.++.. +.+.......+++.++++..++.+.++.-. -....++.++..+++.+.|+++. +.-..
T Consensus 257 ~~~~~~~~--------~~~~~~~~g~T~~gnPla~aaa~a~L~~l~---~~~~~~~v~~~g~~l~~~L~~l~~~~v~~vr 325 (387)
T d1vefa1 257 AVMREEVA--------RSMPKGGHGTTFGGNPLAMAAGVAAIRYLE---RTRLWERAAELGPWFMEKLRAIPSPKIREVR 325 (387)
T ss_dssp EEEEHHHH--------HTSCTTSSCCSSTTCHHHHHHHHHHHHHHH---HHTTHHHHHHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cccceeee--------eccccCCccccCCCCcchhhhcccchhhcc---cccccchHhhhhHHHHHHHHhcCCCceEEEe
Confidence 88877763 222222223445568899888888886211 14455666777778888887651 21111
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
..|.+.-+++....... +..++.++|+.+.+. +.+.+|++ +..+++++++++++|+++|
T Consensus 326 -g~Gl~~~ie~~~~~~~~-~~~~~~~~g~l~~~~------g~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 326 -GMGLMVGLELKEKAAPY-IARLEKEHRVLALQA------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp -EETTEEEEEESSCSHHH-HHHHHHHHCEECEES------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -ecceEEEEEEeCCchHH-HHHHHHHCCCeEEec------CCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 23556667776444444 444444558887653 24678988 4568999999999999874
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4e-15 Score=142.47 Aligned_cols=337 Identities=8% Similarity=0.009 Sum_probs=198.7
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.+++++|+..|. ..+ ..+|.+.+|+.+.+.+... ...+....-...+.+.+++.. ..+.+.+++++++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~sGse 109 (404)
T d2byla1 39 EGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTL---TSRAFYNNVLGEYEEYITKLF------NYHKVLPMNTGVE 109 (404)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCC---CCTTEEESSHHHHHHHHHHHH------TCSEEEEESSHHH
T ss_pred CCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCC---cccccccchHHHHHHhhhhcc------cccccccccCccc
Confidence 356788887653 222 3678899999998875431 111112222233444444432 3478999999999
Q ss_pred HHHH-HHHh---c-------CCCCEEEEeCCCchhhHhHHHHhcccccc-ccccCccceeEEeecCCCCCccCCCCCCCC
Q 013521 147 DISR-LQML---L-------GSNVTVAVQDPSFPAYIDTSVIVGQAGKF-LKETGKYRNIVYMNCRPENNFFPDLSTTSR 214 (441)
Q Consensus 147 al~~-l~~l---~-------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~-~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 214 (441)
|... +... . .....|+...-+|++.............. .........+..+|.++...+...+ ..++
T Consensus 110 A~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~l-~~~~ 188 (404)
T d2byla1 110 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERAL-QDPN 188 (404)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTTCHHHHHHHH-TSTT
T ss_pred cchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecccCHHHHHHhc-CCCC
Confidence 9886 4211 1 12347777788887753333222211100 0000000134444432211100001 1245
Q ss_pred ccEEEEcCC-CCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 215 TDIIFFCSP-NNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 215 ~~~v~i~~p-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
..+|+ ..| +...| ...+++.+++|.++|++||+++|.||+...|...+.......+.-.|| |+ +++|.++ .|
T Consensus 189 iAavi-iEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PD--i~--~~gK~l~-gG 262 (404)
T d2byla1 189 VAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPD--IV--LLGKALS-GG 262 (404)
T ss_dssp EEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS--EE--EECGGGG-TT
T ss_pred eEEEE-ECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCC--EE--EECchhh-CC
Confidence 55555 467 55566 456788999999999999999999999987655444333333332355 33 7999998 66
Q ss_pred -ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--C
Q 013521 293 -VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--G 369 (441)
Q Consensus 293 -~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g 369 (441)
+.+|.+++++++. +.+.......+++.++++..++.+.|+.-.. +...++.++..+++.+.|.++ .
T Consensus 263 ~~p~~av~~~~~i~--------~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~ 331 (404)
T d2byla1 263 LYPVSAVLCDDDIM--------LTIKPGEHFSTYGGNPLGCRVAIAALEVLEE---ENLAENADKLGIILRNELMKLPSD 331 (404)
T ss_dssp SSCCEEEEECHHHH--------TTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTSCTT
T ss_pred Cccceeeeechhhh--------hccCCCCCCcCCCcCHHHHHHHHHHHHHHHh---cCchhhhhHhhHHHHHHHHhhccc
Confidence 8999999988774 2222222334455688888888888862111 344556666677777777765 1
Q ss_pred -CeeeCCCCceEEEEEcC---CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 370 -LKVNGGKNAPYVWVQFP---GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 370 -~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+.-.. ..|.+.-+.+. .....++..+++++ ||.+.|. +.+.||++ +..+++++++++++|+++|
T Consensus 332 ~i~~vR-g~Gl~~~i~~~~~~~~~~~~~~~~l~~~-Gvl~~~~------~~~~i~l~PpL~it~~~id~~~~~l~~al 401 (404)
T d2byla1 332 VVTAVR-GKGLLNAIVIKETKDWDAWKVCLRLRDN-GLLAKPT------HGDIIRFAPPLVIKEDELRESIEIINKTI 401 (404)
T ss_dssp TEEEEE-EETTEEEEEECCCSSCCHHHHHHHHHHT-TEECEEE------ETTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred cceeee-ecccEEEEEEecCCchhHHHHHHHHHhC-CeEEecC------CCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 21112 13455455553 33455677777765 9998763 24679998 4568999999999998864
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.62 E-value=6.8e-14 Score=131.95 Aligned_cols=347 Identities=13% Similarity=0.138 Sum_probs=201.4
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC--C-CCCCcCcHHHHHHHHHHHhhhCCCCCC----cEEEcCCcHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK--G-YGAEQGNMALRTAIADKFYKDMGIEGD----EIFISDGAQS 146 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~--~-Y~~~~g~~~lr~~ia~~l~~~~~~~~~----~I~~t~G~~~ 146 (441)
-|+|-..++ ..++.+.+++...+..... .++. + |+-..-..++.....+...+.|+++.. +|-.-+|++.
T Consensus 29 ~l~LiaSEN--~~S~~v~~algS~l~nkYa-eG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~A 105 (463)
T d2a7va1 29 GLELIASEN--FCSRAALEALGSCLNNKYS-EGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA 105 (463)
T ss_dssp SEECCTTCC--CCCHHHHHHHTSGGGTCCC-CC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred CeeEeccCC--cCCHHHHHHhcchhccccc-CCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHH
Confidence 578876665 3568888888887753221 1211 2 221222333333333333446888866 7889999998
Q ss_pred HHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEEE
Q 013521 147 DISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIFF 220 (441)
Q Consensus 147 al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~i 220 (441)
.+.++.++++|||+|+..++...++..--...+. +. ......+.+...+.++++++ ..|.++ ..+||+|++
T Consensus 106 n~av~~all~pgD~Im~l~l~~GGHlshg~~~~~-~~-~~~~g~~~~~~~Y~~d~~~~-~IDyd~~~~~a~~~kPklIi~ 182 (463)
T d2a7va1 106 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDV-KR-ISATSIFFESMPYKLNPKTG-LIDYNQLALTARLFRPRLIIA 182 (463)
T ss_dssp HHHHHHHHCCSCEECCC---------------------------------CCBCTTTC-SBCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHcCCCceEEeeccCcCccccccccccc-cc-ccceeeEeeeeeeeccCCCC-cCcHHHHHHHHhhcCCceEEe
Confidence 8888999999999999998888776432211000 00 00001113555666665432 334332 368999887
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
-.-.+|- .++ .+++.++|++.|.+++.|-+|.- +...+. |.|+ .. + .++.+|.+|+| +|.|-|.+
T Consensus 183 G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~-~~--a---Dvvt~tTHKTl--rGPrgGiI 249 (463)
T d2a7va1 183 GTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF-KH--A---DIVTTTTHKTL--RGARSGLI 249 (463)
T ss_dssp CCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG-GT--C---SEEEEESSGGG--CSCSCEEE
T ss_pred ccccccc--ccC---HHHHHHHhhcccceEEechhhhhHHhhhhhhcChh-hh--h---hhhhchhhhhh--cCCCceEE
Confidence 5545553 234 77888888899999999999874 444443 3343 22 2 27888999998 79999999
Q ss_pred Eeecccccc--C-----CchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013521 299 VVPEELRYS--N-----GYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLGL 370 (441)
Q Consensus 299 ~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~ 370 (441)
+++++.... . ...+.+++....-....+.+.+.+.|+.+.--.+.. ...+...++..++.+.|.+.|.+.|+
T Consensus 250 l~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~ 329 (463)
T d2a7va1 250 FYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY 329 (463)
T ss_dssp EEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 988743100 0 001234444433333333444555444443321211 34577888888999999999999999
Q ss_pred eeeC-CCCceEEEEEcCC-CChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEe------ecCHHHHHHHHHHHH
Q 013521 371 KVNG-GKNAPYVWVQFPG-SSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSA------FGHREYISEACRRLK 438 (441)
Q Consensus 371 ~~~~-~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~------~~~~~~~~~~l~~l~ 438 (441)
.+.. ..+...+++++.+ ..+...++..|++.||.+. |+.. .+..++.|||+. +-.++++++..+.|.
T Consensus 330 ~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~ 408 (463)
T d2a7va1 330 SLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFID 408 (463)
T ss_dssp EEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHH
T ss_pred eeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCC-CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHH
Confidence 8853 3456789999963 3456777888889999887 4442 233467899995 125688888877776
Q ss_pred hh
Q 013521 439 NF 440 (441)
Q Consensus 439 ~~ 440 (441)
++
T Consensus 409 ~~ 410 (463)
T d2a7va1 409 EG 410 (463)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.7e-13 Score=132.01 Aligned_cols=340 Identities=10% Similarity=0.002 Sum_probs=200.8
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+++++|+..|. ..+. .+|.+.+++.+.+..... .....+ +. +-...+++.+....+...+.+.+++++++|
T Consensus 42 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~-~~~~~~-~~----~~~~~l~~~l~~~~~~~~~~v~f~~sGseA 115 (429)
T d1s0aa_ 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGI-TH----APAIELCRKLVAMTPQPLECVFLADSGSVA 115 (429)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC-CCCSSE-EC----HHHHHHHHHHHHHSCTTCCEEEEESSHHHH
T ss_pred CCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCC-cccCCc-cc----hHHHHHHHHHHhhhccCcceeeeccccccc
Confidence 56789987764 3333 689999999998876421 011111 11 223333444433235556789999999999
Q ss_pred HHH-H--HHhc-----CCCCEEEEeCCCchhhHhHHHHhccc-ccccc-ccCccceeEEeecCCCC-CccCC---CCC--
Q 013521 148 ISR-L--QMLL-----GSNVTVAVQDPSFPAYIDTSVIVGQA-GKFLK-ETGKYRNIVYMNCRPEN-NFFPD---LST-- 211 (441)
Q Consensus 148 l~~-l--~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~~~-~~~~~~~v~~v~~~~~~-~~~~~---~~~-- 211 (441)
+.. + .... .++.+|+....+|++....+...... ..... ...........|..... ....+ ++.
T Consensus 116 ~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (429)
T d1s0aa_ 116 VEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFA 195 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHH
T ss_pred hhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhh
Confidence 875 3 1111 33468999999998864433332211 00000 00000112222221110 00111 110
Q ss_pred ------CCCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEe
Q 013521 212 ------TSRTDIIFFCSP--NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEIS 282 (441)
Q Consensus 212 ------~~~~~~v~i~~p--~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 282 (441)
..++.++++ .| ++--|. ..|++.+++|.++|++||+++|.||++..|...+.......++-.|| +-
T Consensus 196 ~~~~~~~~~iaaviv-EPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PD----i~ 270 (429)
T d1s0aa_ 196 RLMAAHRHEIAAVII-EPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD----IL 270 (429)
T ss_dssp HHHHHHTTTEEEEEE-CSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS----EE
T ss_pred hhhhhcCCccceeee-cceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceeccc----cc
Confidence 245656554 66 454554 56899999999999999999999999998755443333333333455 33
Q ss_pred cCCcccCCccceeEEEEeeccccccCCchhHHHHHHHH-----hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 013521 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIV-----CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKEN 357 (441)
Q Consensus 283 S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 357 (441)
+++|.++-.++.+|.+++.+++. +.+.... ...+.+.++++..++.+.|+.-.. ++..++.++.
T Consensus 271 ~~gK~l~gG~~p~~av~~~~~i~--------~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~---~~~~~~~~~~ 339 (429)
T d1s0aa_ 271 CLGKALTGGTMTLSATLTTREVA--------ETISNGEAGCFMHGPTFMGNPLACAAANASLAILES---GDWQQQVADI 339 (429)
T ss_dssp EECGGGGTSSSCCEEEEECHHHH--------HHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT---CHHHHHHHHH
T ss_pred ccccccccccccccchhhHHHHH--------hccCCCCCcceeecCCCCCCcccchhhhcccccccc---ccccchhhHH
Confidence 48999974458999999988772 3333211 123445778888888888862111 3455666666
Q ss_pred HHHHHHHHHhC----CCeeeCCCCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHH
Q 013521 358 AKIIVDAFQSL----GLKVNGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYI 430 (441)
Q Consensus 358 ~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~ 430 (441)
-+++.+.|+++ .+.-.. ..|.+.-+++. ......+...+++ +|+.+.|. .+.||++ +..+++++
T Consensus 340 g~~l~~~L~~l~~~~~v~~vr-g~Gl~~~~e~~~~~~~~~~~~~~~~-~Gl~~~~~-------g~~i~~~Ppl~it~~ei 410 (429)
T d1s0aa_ 340 EVQLREQLAPARDAEMVADVR-VLGAIGVVETTHPVNMAALQKFFVE-QGVWIRPF-------GKLIYLMPPYIILPQQL 410 (429)
T ss_dssp HHHHHHHHGGGGGCTTEEEEE-EETTEEEEEESSCBCHHHHHHHHHH-TTEECCCB-------TTEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHhccCCceEEEe-ecccEEEEEecCcccHHHHHHHHHH-CCcEEEec-------CCEEEEeCCcCCCHHHH
Confidence 67777777654 222122 24566667775 3345566666665 59998763 2579998 55689999
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
++++++|.++|
T Consensus 411 d~~~~~l~~al 421 (429)
T d1s0aa_ 411 QRLTAAVNRAV 421 (429)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.61 E-value=1.1e-14 Score=142.62 Aligned_cols=330 Identities=16% Similarity=0.131 Sum_probs=189.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
..|||-......+..+..+.++ . .+-..|+.+.+..+|++.+++++ | .+.+++++++++|..+ +
T Consensus 43 ~~id~~sd~~t~~~~~~~~a~~----~-----~gd~~y~~~~~~~~le~~~a~l~----g--~~~~~~~~sGt~A~~~a~ 107 (465)
T d1ax4a_ 43 VYIDLLTDSGTNAMSDHQWAAM----I-----TGDEAYAGSRNYYDLKDKAKELF----N--YDYIIPAHQGRGAENILF 107 (465)
T ss_dssp CSEECSCSSSCCCEEHHHHHHH----H-----TCCCCSSSCHHHHHHHHHHHHHH----C--CCEEEEESSHHHHHHHHH
T ss_pred eeeecccccchhhhhHHHHHHH----h-----hhhhhhccChHHHHHHHHHHHHH----C--CCEEEECCCcHHHHHHHH
Confidence 4578766554444344433332 2 22235888888899999999997 4 4789999999999886 5
Q ss_pred HHhcCCC-------CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC--------CCCccCCCCC-----
Q 013521 152 QMLLGSN-------VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP--------ENNFFPDLST----- 211 (441)
Q Consensus 152 ~~l~~~g-------d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~--------~~~~~~~~~~----- 211 (441)
..++++| +.++...+.+..........|. ..+.+.... ......|+++
T Consensus 108 ~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i 175 (465)
T d1ax4a_ 108 PVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGC------------KAINIVTEKAFDSETYDDWKGDFDIKKLKENI 175 (465)
T ss_dssp HHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTC------------EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEeccchhhhhHHHHHHcCC------------eeecccccccCCCCCCCCccCccCHHHHHHHH
Confidence 5555443 3455565555555555555663 333332211 0111222211
Q ss_pred ---C-CCccEEEEcCCCCccc-cCCCHHHHHHHHHHHHHcCcEEEEccccccccc------CC--CCCcccccCC--Ccc
Q 013521 212 ---T-SRTDIIFFCSPNNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT------DP--SPRSIYEIPG--ARE 276 (441)
Q Consensus 212 ---~-~~~~~v~i~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~------~~--~~~~~~~~~~--~~~ 276 (441)
. ..+.++++..++|..| .++|.+++++|.++|++||+++|+|+++..... .. ...+...... ..-
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 255 (465)
T d1ax4a_ 176 AQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKY 255 (465)
T ss_dssp HHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGG
T ss_pred HhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccc
Confidence 1 2344555545566554 668999999999999999999999999863211 00 0111111100 000
Q ss_pred eeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHH-h----hhcCCCcHHHHHHHHHhcCCCcHHHHHHHH
Q 013521 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIV-C----TCFNGASNIVQAGGLACLSPDGFQALRTVI 351 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 351 (441)
..+...|.+|.. .+.+.|++++++.... ........ . ......+.....++...+.+... +...
T Consensus 256 ~d~~s~s~~k~~--~~~~~g~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~---~~~~ 324 (465)
T d1ax4a_ 256 ADALTMSAKKDP--LLNIGGLVAIRDNEEI------FTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYL 324 (465)
T ss_dssp CSEEEEETTSTT--CCSSCEEEEESSCHHH------HHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHH
T ss_pred cceeEeecccCc--ccccceeEeecchHHH------HHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhh---HHHH
Confidence 124555666665 5667899988765420 11111111 1 11112233333322222221111 3344
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC---------CChHHHHHHHHHhcCeEEeCCCCc-----------
Q 013521 352 DYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG---------SSSWDVFAEILEKTHILTIPGSGF----------- 411 (441)
Q Consensus 352 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ll~~~gi~v~pg~~f----------- 411 (441)
++..++.+++.+.|++.++.+..+.+++++.++... .........++.+.||...+....
T Consensus 325 ~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~ 404 (465)
T d1ax4a_ 325 HYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQ 404 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSB
T ss_pred HHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCc
Confidence 555667888999999998888777788877776531 123456677777889876543211
Q ss_pred CCCCCCeEEEEee---cCHHHHHHHHHHHHhh
Q 013521 412 GPGGNEHIRVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 412 ~~~~~~~iRls~~---~~~~~~~~~l~~l~~~ 440 (441)
.....+.+||++. .++++++..++.|+++
T Consensus 405 ~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v 436 (465)
T d1ax4a_ 405 KHADMEFMRLTIARRVYTNDHMDYIADALIGL 436 (465)
T ss_dssp CCCSCCEEEEECCTTSSCHHHHHHHHHHHHTT
T ss_pred cCCCCCceEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 0122458999862 3789999999999875
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=2.9e-14 Score=138.80 Aligned_cols=296 Identities=12% Similarity=0.043 Sum_probs=171.2
Q ss_pred cHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHHH-HHH-HHHh---cCCCCEEEEeCCCchhhHhHHHHhccccccccccC
Q 013521 116 NMALRTAIADKFYKDMGIEG-DEIFISDGAQSD-ISR-LQML---LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETG 189 (441)
Q Consensus 116 ~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~a-l~~-l~~l---~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~ 189 (441)
...+...+.+++.+.+|.+. ...++|+|+++. +.+ +... ..+++.|+++...|+++...+..+|
T Consensus 92 ~~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g---------- 161 (445)
T d3bc8a1 92 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAG---------- 161 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcC----------
Confidence 34577778888776556543 466677777654 333 3322 3567899999999999999999999
Q ss_pred ccceeEEeecCC-CCCccCCCCC---------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 190 KYRNIVYMNCRP-ENNFFPDLST---------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 190 ~~~~v~~v~~~~-~~~~~~~~~~---------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
.+.+.|+... +..+..|++. .+++.+|++++|+|++|.+-+ +++|+++|++||+++++|++|+.+
T Consensus 162 --~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~ 236 (445)
T d3bc8a1 162 --FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQ 236 (445)
T ss_dssp --CEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTT
T ss_pred --CeeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhh
Confidence 4555554321 1233344321 246778888899999999988 889999999999999999999843
Q ss_pred ccC-CC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHH
Q 013521 260 ITD-PS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLA 337 (441)
Q Consensus 260 ~~~-~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 337 (441)
... .. +.....+ .+..++..|.+|.++ .+...|+++..+... .+.+...............+.+...
T Consensus 237 ~~~~~~~~~~~~~~---~~vd~~~~s~hK~~~-~p~g~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (445)
T d3bc8a1 237 SSKCMHLIQQGARV---GRIDAFVQSLDKNFM-VPVGGAIIAGFNEPF-------IQDISKMYPGRASASPSLDVLITLL 305 (445)
T ss_dssp CHHHHHHHHHHHHH---SCCCEEEEEHHHHHS-CCSSCEEEEESCHHH-------HHHHHHHSCSCBCSHHHHHHHHHHH
T ss_pred hhhccccchhccCc---CCcceEEecCccccc-cCCCCceeeeCChHH-------HHHHHHHHhhcccCcchHHHHHHHH
Confidence 211 10 1111112 123477889999886 444567777765542 2333222111111122222322222
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHh----CCCeeeC-CCCceEEEEEcC---C---CChHHHHHHHHHhcCeEEe
Q 013521 338 CLSPDGFQALRTVIDYYKENAKIIVDAFQS----LGLKVNG-GKNAPYVWVQFP---G---SSSWDVFAEILEKTHILTI 406 (441)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~-~~~~~~~~~~~~---~---~~~~~~~~~ll~~~gi~v~ 406 (441)
.+ +........+...++.+++.+.|.+ .+..+.. +......++.+. . .+..++...|. +.||...
T Consensus 306 ~~---g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~-~~gI~~~ 381 (445)
T d3bc8a1 306 SL---GCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLF-TRQVSGA 381 (445)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHH-HTTCCSC
T ss_pred HH---hhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHH-HcCCCcc
Confidence 22 2233344445555555566555554 3544432 234445555543 1 12233444444 4476311
Q ss_pred ----CCC-------C---cC----CCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 407 ----PGS-------G---FG----PGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 407 ----pg~-------~---f~----~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
++. . |+ .....++|+++ ..+++|++.++++|++++
T Consensus 382 ~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kil 436 (445)
T d3bc8a1 382 RAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCL 436 (445)
T ss_dssp EEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHH
Confidence 111 1 11 11235689886 458899999999998763
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.59 E-value=4.1e-14 Score=130.66 Aligned_cols=207 Identities=17% Similarity=0.169 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH----HhccccccccccCccc
Q 013521 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAGKFLKETGKYR 192 (441)
Q Consensus 118 ~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~ 192 (441)
.|.+.+|+.- ..+..++++.+++|+.. ++.++++||+|++..+.|.+....+. .+| +
T Consensus 2 aLE~~la~Le------g~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~g------------i 63 (331)
T d1pffa_ 2 ALEGKIAKLE------HAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG------------V 63 (331)
T ss_dssp HHHHHHHHHH------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT------------C
T ss_pred HHHHHHHHHh------CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcC------------e
Confidence 4677888764 24678888999999976 88999999999999999988655554 344 5
Q ss_pred eeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHH-HHcCcEEEEcccccccccCCCCCccccc
Q 013521 193 NIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFA-KANGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 193 ~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a-~~~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
++.+++..+.+.+... ..+++++|++.+|.||+..+.+ ++++++++ +++|+++|+|..+.....- .++ .+
T Consensus 64 ~~~~~d~~d~~~~~~~--i~~~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~---~pl-~~ 134 (331)
T d1pffa_ 64 EVDFIDMAVPGNIEKH--LKPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT---NPL-DL 134 (331)
T ss_dssp EEEEECTTSTTHHHHT--CCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC---CGG-GG
T ss_pred EEEEecccchhhHhhh--cccccceeeeeccccccccccc---chhhhhhhhcccCceEEeeccccccccc---ccc-cc
Confidence 8888876543332221 2478999999999999999999 66666664 5789999999998742221 122 11
Q ss_pred CCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH--HHhhhcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 272 PGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR--IVCTCFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
+-.|++.|.+|.++-.| .-.|.++++++.. ..... .........++..... ++ .+.+.+.
T Consensus 135 ----GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~--------~~~~~~~~~~~~G~~l~p~~a~l---l~--rgl~Tl~ 197 (331)
T d1pffa_ 135 ----GVDIVVHSATKYINGHTDVVAGLVCSRADII--------AKVKSQGIKDITGAIISPHDAWL---IT--RGTLTLD 197 (331)
T ss_dssp ----TCSEEEEETTTTTSSSSSCCCEEEEECHHHH--------HHHHHTCCCCCCCCCCCHHHHHH---HH--HHHHHHH
T ss_pred ----CCCEEEecchhhcCCCCccccccccccccch--------hhhhhhhhhhccCCCCCHHHHHH---HH--HHHHHHH
Confidence 12399999999986423 3346777765542 22111 1222233345554322 22 3556678
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 013521 349 TVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~ 368 (441)
.+.++..++...+.+.|+++
T Consensus 198 ~Rm~~~~~nA~~lA~~L~~h 217 (331)
T d1pffa_ 198 MRVKRAAENAQKVAEFLHEH 217 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhhC
Confidence 88889999999999999988
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.6e-13 Score=132.77 Aligned_cols=343 Identities=11% Similarity=-0.014 Sum_probs=211.9
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC-----cEEEcCCcHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD-----EIFISDGAQSD 147 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~I~~t~G~~~a 147 (441)
...||...... ..++.+.+.+.+.+.. ....+...+...++.+.+.+|+.+.++.+.. .=++|+|++++
T Consensus 54 ~~~n~asf~~t-~~~~~~~~l~~~~~~~-----N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA 127 (450)
T d1pmma_ 54 ARQNLATFCQT-WDDENVHKLMDLSINK-----NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEA 127 (450)
T ss_dssp GGGBCSCCSCC-CCCHHHHHHHHHTTTC-----BTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHH
T ss_pred ccccccccccC-CCCHHHHHHHHHHHhc-----CCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHH
Confidence 33555554433 3456677777776542 3334444456788889999998886776421 24799999998
Q ss_pred HHH-HHHh------------cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC---
Q 013521 148 ISR-LQML------------LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--- 211 (441)
Q Consensus 148 l~~-l~~l------------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--- 211 (441)
+.+ +... ......+++....|.++...++.+| +++..++.+++ ++..|.+.
T Consensus 128 ~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~g------------i~~~~v~~~~~-~~~~d~~~L~~ 194 (450)
T d1pmma_ 128 CMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWD------------VELREIPMRPG-QLFMDPKRMIE 194 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTT------------CEEEECCCBTT-BCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcC------------CCceEeeecCC-CCcCcHHHHHH
Confidence 775 4221 1122357778889999999999999 68899998864 34444332
Q ss_pred --CCCccEEEEcCCCCccccCCCHHHHHHHHH---HHHHcCcEEEEccccccccc--CCC-CCcccccCCCcceeEEEec
Q 013521 212 --TSRTDIIFFCSPNNPTGHAATWQQLKKLVE---FAKANGSIIVYDSAYAAYIT--DPS-PRSIYEIPGAREVAIEISS 283 (441)
Q Consensus 212 --~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~---~a~~~~~~ii~De~~~~~~~--~~~-~~~~~~~~~~~~~~i~i~S 283 (441)
..++.+|+.+.++|.||.+=+.+++.+|++ .|+++|+++.+|.+|+.+.. ... ..... +.+....+..|
T Consensus 195 ~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~---~~~~aDSi~~s 271 (450)
T d1pmma_ 195 ACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF---RLPRVKSISAS 271 (450)
T ss_dssp HCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST---TSTTEEEEEEE
T ss_pred HhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhh---cccceeEeecC
Confidence 467888888899999999999877766654 46779999999999976432 111 11111 23345578889
Q ss_pred CCcccCCccceeEEEEeeccccccCCchhHHH-HH-HHHhhhcCCCcH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 013521 284 FSKFAGFTGVRLGWTVVPEELRYSNGYPVIKD-FN-RIVCTCFNGASN-IVQAGGLACLSPDGFQALRTVIDYYKENAKI 360 (441)
Q Consensus 284 ~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (441)
.+|.++ ....+||++..++............ +. ........+.-. ....+..+.+...+.+.+++..++..+..++
T Consensus 272 ~HK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~ 350 (450)
T d1pmma_ 272 GHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAY 350 (450)
T ss_dssp TTTTTC-CCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccC-CCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 999885 6677999998766531110000000 00 000011111111 1111122233333445678888889999999
Q ss_pred HHHHHHhC-CCeeeCC----CCceEEEEEcCC-----CChHHHHHHHHHhcCeEEeCCCCcC--CCCCCeEEEEee--cC
Q 013521 361 IVDAFQSL-GLKVNGG----KNAPYVWVQFPG-----SSSWDVFAEILEKTHILTIPGSGFG--PGGNEHIRVSAF--GH 426 (441)
Q Consensus 361 l~~~L~~~-g~~~~~~----~~~~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~~iRls~~--~~ 426 (441)
+.+.|++. ++++..+ ..-+.+.+++.+ .+..++...|. ++|..|.. ..+. ......+|+++. .+
T Consensus 351 l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~-~~Gw~v~~-~~~p~~~~~~~~lRvvv~~~~t 428 (450)
T d1pmma_ 351 LADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLR-LRGWQVPA-FTLGGEATDIVVMRIMCRRGFE 428 (450)
T ss_dssp HHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHH-TTTCBCCE-EECCTTCTTCEEEEEECCTTCC
T ss_pred HHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHH-HcCCeeec-cCcCCCcCCcEEEEEEccCCCC
Confidence 99999988 5766432 223457777742 33445655554 55866532 1111 123457999973 37
Q ss_pred HHHHHHHHHHHHhh
Q 013521 427 REYISEACRRLKNF 440 (441)
Q Consensus 427 ~~~~~~~l~~l~~~ 440 (441)
+++++++++.|+++
T Consensus 429 ~e~~d~lv~dl~~~ 442 (450)
T d1pmma_ 429 MDFAELLLEDYKAS 442 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88889888888765
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.58 E-value=1.5e-12 Score=123.79 Aligned_cols=304 Identities=15% Similarity=0.165 Sum_probs=188.7
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEEe
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAVQ 164 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv~ 164 (441)
..+-.+++.+.+.. .... +....-..++.+.+|+|+ | ....+.++++++|+.+ +..+ +++||+|+++
T Consensus 12 ~~~~~~~~~~~l~~----g~~~-~~~g~~v~~fE~~~a~~~----g--~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p 80 (384)
T d1b9ha_ 12 DDAERNGLVRALEQ----GQWW-RMGGDEVNSFEREFAAHH----G--AAHALAVTNGTHALELALQVMGVGPGTEVIVP 80 (384)
T ss_dssp CHHHHHHHHHHHHT----SCCB-TTTCSHHHHHHHHHHHHT----T--CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHc----CCee-ecCCHHHHHHHHHHHHHH----C--cCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEe
Confidence 45567777777763 2221 122335678899999985 4 3577888888888887 6655 6999999999
Q ss_pred CCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHH
Q 013521 165 DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKL 239 (441)
Q Consensus 165 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i 239 (441)
..+|+.....+...| .++++++++++ .+..+.+. .+++++|++ .+..|...+ +.+|
T Consensus 81 ~~t~~a~~~ai~~~g------------~~p~~~d~~~~-~~~~d~~~~~~~i~~~tk~i~~---~~~~g~~~d---~~~i 141 (384)
T d1b9ha_ 81 AFTFISSSQAAQRLG------------AVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIMP---VHMAGLMAD---MDAL 141 (384)
T ss_dssp SSSCTHHHHHHHHTT------------CEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECC---BCGGGCCCC---HHHH
T ss_pred ccccccccccccccc------------ccccccccccc-ccccchhhhccccccccccccc---ccccccccc---cccc
Confidence 999999999999999 58889888764 34444332 578888765 455666666 8899
Q ss_pred HHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecC--CcccCCccceeEEEEeeccccccCCchhHHHHH
Q 013521 240 VEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSF--SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFN 317 (441)
Q Consensus 240 ~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 317 (441)
.++|+++++++|+|.+++....-. ...+..+ .+ +.+.|| +|.++ .| .-|.++++++.+ .+.++
T Consensus 142 ~~~~~~~~i~lieD~a~a~ga~~~-g~~~g~~---g~--~~~~Sf~~~K~i~-~g-~GG~i~t~~~~~-------~~~~~ 206 (384)
T d1b9ha_ 142 AKISADTGVPLLQDAAHAHGARWQ-GKRVGEL---DS--IATFSFQNGKLMT-AG-EGGAVVFPDGET-------EKYET 206 (384)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEET-TEEGGGS---SS--CEEEECCTTSSSC-SS-SCEEEEECTTCH-------HHHHH
T ss_pred hhhhhhhhhhhhhhhceecccccC-CEecCcc---cc--cceeccccccccc-cc-ccchhhhhhHHH-------HHHHH
Confidence 999999999999999998543211 1223233 12 444454 89875 33 368888877664 33343
Q ss_pred HHHhhhc-----------------CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCC----
Q 013521 318 RIVCTCF-----------------NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGG---- 375 (441)
Q Consensus 318 ~~~~~~~-----------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~---- 375 (441)
.++.... .-.+.+....+...| +.+++..+.-+++.+++.+.|+++ ++.....
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL-----~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~ 281 (384)
T d1b9ha_ 207 AFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQL-----ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRA 281 (384)
T ss_dssp HHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTC
T ss_pred HHHhcCCCCccccccccccccccccccccchhhhhhhhh-----hhcccchhhhhhhhhhhhhhhhcccccccccccccc
Confidence 3332210 112333322233333 334666666677888888889876 5543211
Q ss_pred -CCc-eEEEEEcCCCCh---HHHHHHHHHhcCeEEeCCCC----------cCCC-----------------CCCeEEEEe
Q 013521 376 -KNA-PYVWVQFPGSSS---WDVFAEILEKTHILTIPGSG----------FGPG-----------------GNEHIRVSA 423 (441)
Q Consensus 376 -~~~-~~~~~~~~~~~~---~~~~~~ll~~~gi~v~pg~~----------f~~~-----------------~~~~iRls~ 423 (441)
... ++..+.++.... .++++.| +++||.+.+... ++.. ..+.|.|-+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~Rd~l~~~L-~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~ 360 (384)
T d1b9ha_ 282 DRNSHYMAMFRIPGLTEERRNALVDRL-VEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHH 360 (384)
T ss_dssp CBCCCSEEEEECTTCCHHHHHHHHHHH-HHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEG
T ss_pred cccccccccceecccccccHHHHHHHH-HHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccC
Confidence 111 234445553222 2455665 556998876421 0000 013477775
Q ss_pred ec--C-HHHHHHHHHHHHhhC
Q 013521 424 FG--H-REYISEACRRLKNFL 441 (441)
Q Consensus 424 ~~--~-~~~~~~~l~~l~~~l 441 (441)
.. + +++++..++.|++++
T Consensus 361 ~~~Lt~e~ei~~I~~~i~~~l 381 (384)
T d1b9ha_ 361 RVLLAGEPELHATAEIIADAV 381 (384)
T ss_dssp GGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 33 4 578999999988763
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.58 E-value=4.4e-13 Score=126.81 Aligned_cols=348 Identities=13% Similarity=0.146 Sum_probs=217.2
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHH-HHHhhhCCCCC----CcEEEcCCcH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIA-DKFYKDMGIEG----DEIFISDGAQ 145 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia-~~l~~~~~~~~----~~I~~t~G~~ 145 (441)
.-|+|-..++ ..++.+.+++...+..... .++. +|....-..+-.|.+| +...+.|+.++ -+|-.-+|++
T Consensus 32 ~~l~LIaSEN--~~S~~v~~algS~l~nkYa-eG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~ 108 (470)
T d1rv3a_ 32 VGLELIASEN--FASRAVLEALGSCLNNKYS-LGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSP 108 (470)
T ss_dssp SSEECCTTCC--CCCHHHHHHHTSGGGTCCC-CEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHH
T ss_pred cCceEecCCC--cCCHHHHHHhcchhccccc-CCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCcc
Confidence 4588877765 3568888888887753221 1211 2322222333344444 33344677764 3677888888
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEE
Q 013521 146 SDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIF 219 (441)
Q Consensus 146 ~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~ 219 (441)
..+..+.++++|||+|+..++...++..--...+.... .....+.+....+++++.+ ..|.++ ..+||+|+
T Consensus 109 An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~--~~~~~~~~~~~y~v~~~~~-~IDyd~l~~~a~~~kPklIi 185 (470)
T d1rv3a_ 109 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKI--SATSIFFESMAYKVNPDTG-YIDYDRLEENARLFHPKLII 185 (470)
T ss_dssp HHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBC--SHHHHHSEEEEECBCTTTC-SBCHHHHHHHHHHHCCSEEE
T ss_pred HHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCc--ccccceeEeeEEEEecccC-cccHHHHHHHHHhhCcceEe
Confidence 88888999999999999998877776443211111000 0001124778888887643 344332 36899988
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+-.-.+|- .++ .+++.++|++.|.+++.|-+|.- +...+. +.|+ .. . .++.+|.+|+| +|.|-|.
T Consensus 186 ~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl-~~--a---Dvvt~tTHKtl--rGPrgGi 252 (470)
T d1rv3a_ 186 AGTSCYSR--NLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF-EH--C---HVVTTTTHKTL--RGCRAGM 252 (470)
T ss_dssp ECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG-GT--C---SEEEEESSGGG--CCCSCEE
T ss_pred echhhccc--cCC---HHHHHHHHhccCCeEEecchhhhhhccccccCChh-he--e---eeeeeehhhhc--cCCcceE
Confidence 75545543 344 77888888899999999999874 333333 3343 22 2 28899999998 7999999
Q ss_pred EEeeccccc-------cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 298 TVVPEELRY-------SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD-GFQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 298 l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
+++.++.-. .....+.+.+....-....+.+.+.+.|+.+.--.+ .....+...++..++.+.|.+.|.+.|
T Consensus 253 I~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G 332 (470)
T d1rv3a_ 253 IFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELG 332 (470)
T ss_dssp EEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 998765310 001112444443332223334445555444432211 123457788888999999999999999
Q ss_pred CeeeC-CCCceEEEEEcCC-CChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEe------ecCHHHHHHHHHHH
Q 013521 370 LKVNG-GKNAPYVWVQFPG-SSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSA------FGHREYISEACRRL 437 (441)
Q Consensus 370 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~------~~~~~~~~~~l~~l 437 (441)
+.+.. ..+...+++++.. ..+...++.+|++.||.+. |++. .+..++.|||+. +-.++++++..+.|
T Consensus 333 ~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I 411 (470)
T d1rv3a_ 333 YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDK-SALRPSGLRLGTPALTSRGLLEKDFQKVAHFI 411 (470)
T ss_dssp CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCS-CTTSCCEEEEECHHHHHTTCCHHHHHHHHHHH
T ss_pred ceeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCC-CCCCCCeeEecCHHHHhCCCCHHHHHHHHHHH
Confidence 98853 3456789999862 2345567888888999886 5542 233467899994 22578888877777
Q ss_pred Hhh
Q 013521 438 KNF 440 (441)
Q Consensus 438 ~~~ 440 (441)
.++
T Consensus 412 ~~~ 414 (470)
T d1rv3a_ 412 HRG 414 (470)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.57 E-value=5.5e-13 Score=128.81 Aligned_cols=348 Identities=11% Similarity=0.014 Sum_probs=194.2
Q ss_pred CCCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.+++++|+..| ...+ ..+|.+.+++.+.+.+... ....+. .+.+..+|+.|.+...-..+.+.+++++++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~--~~~~~~-----~~~~~~la~~L~~~~~~~~~~v~f~~sGse 111 (431)
T d1zoda1 39 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH--LFSEML-----SRPVVDLATRLANITPPGLDRALLLSTGAE 111 (431)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC--CCTTCC-----CHHHHHHHHHHHHHSCTTCCEEEEESCHHH
T ss_pred CCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccc--cccccc-----cHHHHHHHHHHHHhCCcccceeeecccccc
Confidence 35678888655 3333 3679999999999987431 112221 223344555554433334579999999999
Q ss_pred HHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCcc--CC--------CC---
Q 013521 147 DISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFF--PD--------LS--- 210 (441)
Q Consensus 147 al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~--~~--------~~--- 210 (441)
|+.. + .......+.|+...-+|++........+.................++........ .. ++
T Consensus 112 A~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (431)
T d1zoda1 112 SNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF 191 (431)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHH
Confidence 9886 4 2334455789999999998765554433211100000000122333222111000 00 00
Q ss_pred ------CCCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEe
Q 013521 211 ------TTSRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEIS 282 (441)
Q Consensus 211 ------~~~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 282 (441)
...++.++ +..| +.--|. ..|++.+++|.++|++||+++|.||++..|...+.......+.-.|| +-
T Consensus 192 ~~~~~~~~~~iAav-i~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PD----i~ 266 (431)
T d1zoda1 192 DLIDRQSSGNLAAF-IAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD----IL 266 (431)
T ss_dssp HHHHHHCCSCEEEE-EECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----EE
T ss_pred HHHHHhccccccce-eeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcc----hh
Confidence 01345554 4577 333454 46899999999999999999999999997654443333333333455 34
Q ss_pred cCCcccCCccceeEEEEeeccccccCCchhHHHHHHH--HhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHH
Q 013521 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI--VCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAK 359 (441)
Q Consensus 283 S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~ 359 (441)
+++|.++ .|+-++.+++.++.. +..... ....+.+.++++..|+.+.++.... ..+++..+.-+...+
T Consensus 267 ~~gK~l~-gG~p~~av~~~~~~~--------~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~ 337 (431)
T d1zoda1 267 TLSKTLG-AGLPLAAIVTSAAIE--------ERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRR 337 (431)
T ss_dssp EECHHHH-TTSSCEEEEECHHHH--------HHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccccccc-cccccceeeeeecch--------hhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Confidence 5899998 889999888877663 222211 1223455778888777777752111 122333333333334
Q ss_pred HHHHHHHhCCCeeeCCCCceEEEEEcC---C------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHH
Q 013521 360 IIVDAFQSLGLKVNGGKNAPYVWVQFP---G------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHRE 428 (441)
Q Consensus 360 ~l~~~L~~~g~~~~~~~~~~~~~~~~~---~------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~ 428 (441)
.+.+.+.++++....-.-|.++-+++. . .....+...+++ +|+....- ..+...+.||++ +..+++
T Consensus 338 ~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~-~Gl~~~~~--~~~~~~~~i~l~Ppl~it~~ 414 (431)
T d1zoda1 338 GLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIV--QLPGMGGVFRIAPPLTVSED 414 (431)
T ss_dssp HHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEE--CCTTSCCEEEECCCTTCCHH
T ss_pred hhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHH-hCcccCee--eecCCCCEEEEECCCCCCHH
Confidence 444445555433211113444444441 1 112345566665 48863211 112235689998 456899
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
++++++++|.++|
T Consensus 415 eid~~~~~l~~al 427 (431)
T d1zoda1 415 EIDLGLSLLGQAI 427 (431)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.57 E-value=7.5e-14 Score=133.69 Aligned_cols=341 Identities=9% Similarity=0.009 Sum_probs=184.5
Q ss_pred CCCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++..+|+..|. ..+. .+|.+.+|+++.+.+... .... ......+.+++.+.... ..+.+.+++++++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~---~~~~----~~~~~~~~~~~~~~~~~--~~~~v~~~~sgs~ 107 (404)
T d1z7da1 37 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI---CSRA----FFSVPLGICERYLTNLL--GYDKVLMMNTGAE 107 (404)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC---CCTT----SEEHHHHHHHHHHHHHH--TCSEEEEESSHHH
T ss_pred CCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCC---cccc----cchHHHHHHHHhhhhcc--ccceeeeeccccc
Confidence 356788877653 2232 578999999998875321 1111 11122233333333212 3467888888888
Q ss_pred HHHH-HHHh--c--------CCCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCCCccCCCCCCCC
Q 013521 147 DISR-LQML--L--------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPENNFFPDLSTTSR 214 (441)
Q Consensus 147 al~~-l~~l--~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 214 (441)
+... +... . .....++...-+|.+................ .......+..+|.+....+.. ....++
T Consensus 108 a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~ 186 (404)
T d1z7da1 108 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEE-ELKDPN 186 (404)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHH-HHTSTT
T ss_pred hHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHH-HhcCCC
Confidence 8775 3111 1 1224678888888776444333321111000 000001222222211100000 001245
Q ss_pred ccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 215 TDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 215 ~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
+.+|+ ..| +...|.. .|++.+++|.++|++||+++|.||++..|...+.......++-.|| | -+++|.++ .|
T Consensus 187 iAavi-~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PD--i--vt~gK~l~-gG 260 (404)
T d1z7da1 187 VCAFI-VEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPD--V--ILLGKALS-GG 260 (404)
T ss_dssp EEEEE-ECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS--E--EEECGGGG-TT
T ss_pred EEEEE-EEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCC--E--EEEccccc-CC
Confidence 55544 577 5556765 5777899999999999999999999987654443333333433455 3 37999998 55
Q ss_pred -ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013521 293 -VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLGL 370 (441)
Q Consensus 293 -~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~ 370 (441)
+.+|.+++++++.. .+.......+++.++++..|+.+.|+.... ...++..+.-+...+.+.+.++++++
T Consensus 261 ~~p~~~v~~~~~i~~--------~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 332 (404)
T d1z7da1 261 HYPISAVLANDDIML--------VIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKI 332 (404)
T ss_dssp SSCCEEEEECHHHHT--------TCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CCCcccccchHHHHc--------cCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCC
Confidence 88999999988742 222222233445688888888888862111 22233333333444455555555543
Q ss_pred eeeCCCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 371 KVNGGKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 371 ~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.......|.+..+.+.. ....++..+++++ ||.+.|. +.+.|||+ +..+++++++++++|.+++
T Consensus 333 v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~-Gl~~~~~------~~~~ir~~Ppl~it~~~id~~~~~l~~al 400 (404)
T d1z7da1 333 VRDVRGKGLLCAIEFKNELVNVLDICLKLKEN-GLITRDV------HDKTIRLTPPLCITKEQLDECTEIIVKTV 400 (404)
T ss_dssp EEEEEEETTEEEEEECTTTCCHHHHHHHHHHT-TEECCEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEeeCcEEEEEEcCCcccHHHHHHHHHhC-CeEEecC------CCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 22111245666677752 3345566666655 9998663 24679997 5568999999999998864
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.1e-13 Score=130.52 Aligned_cols=330 Identities=11% Similarity=0.033 Sum_probs=180.0
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCC-CC---CCCCCC--cCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVK-GY---KGYGAE--QGNMALRTAIADKFYKDMGIEGD-EIFISDGAQS 146 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~-~~---~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~ 146 (441)
++||+-|. ...|++|+++|.+.+.++...+ +. ++.++. .-..+.|+.|++++ +++.+ .|++++|+++
T Consensus 2 ~~nF~pGP--~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~----~~~~~~~v~~~~gs~t 75 (360)
T d1bjna_ 2 IFNFSSGP--AMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLL----NVPSNYKVLFCHGGGR 75 (360)
T ss_dssp CEECCSSS--CCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSHHH
T ss_pred eEEeCCCC--cCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHh----CCCCCCEEEEECCchH
Confidence 57887664 3578999999999876553211 11 111111 12345566666665 77544 7889999988
Q ss_pred HHHH--HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccC-CC--CCCCCccEEEEc
Q 013521 147 DISR--LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFP-DL--STTSRTDIIFFC 221 (441)
Q Consensus 147 al~~--l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~--~~~~~~~~v~i~ 221 (441)
+... +..+..+++.+++..-.+.+. .........+ ..++.+....+..... +. ....++++++++
T Consensus 76 ~~~~a~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 145 (360)
T d1bjna_ 76 GQFAAVPLNILGDKTTADYVDAGYWAA-SAIKEAKKYC---------TPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMH 145 (360)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESSHHHH-HHHHHHTTTS---------EEEEEECEEEETTEEEECCGGGCCCCSSCSCEE
T ss_pred HHHhhhhhcccccccccceecccchhh-hhHHHHhhcC---------ccceeeccccCCCcchhhhhhhhccCCceeEEE
Confidence 7664 355668888888876666543 3333333222 2333333332222211 11 124677887888
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
+.+|-||...+.. .+. ++.+++++++|.+.+.... +.... +..+.+.|.+|.++.|+ ..|.++..
T Consensus 146 ~~~~~t~~~~~~~---~i~--~~~~~~~v~vDa~~~~~~~---~vd~~------~~dv~~~ss~k~~~~~~-~~~~~~~~ 210 (360)
T d1bjna_ 146 YCPNETIDGIAID---ETP--DFGADVVVAADFSSTILSR---PIDVS------RYGVIYAGAQKNIGPAG-LTIVIVRE 210 (360)
T ss_dssp ECSEETTTTEECC---CCC--CCCTTCCEEEECTTTTTSS---CCCGG------GCSEEEEETTTTTSSTT-CEEEEEEG
T ss_pred ecccccccCcccc---cee--cccccceeeeeeeccccce---eeeec------cceeEEEEcccccccCC-CceeEeee
Confidence 7889898887743 333 4567899999987763211 22222 22378888999987444 45555555
Q ss_pred ccccccCCch--h--HHHHHHHHhhhcCCCcHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013521 302 EELRYSNGYP--V--IKDFNRIVCTCFNGASNIVQAGGLACLS-PDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK 376 (441)
Q Consensus 302 ~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 376 (441)
+......... . ......... ....+.......+..... .......+...++.++....+.+.+...+.....+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (360)
T d1bjna_ 211 DLLGKANIACPSILDYSILNDNGS-MFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVA 289 (360)
T ss_dssp GGCSCCCTTSCGGGCHHHHHHTTT-CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBC
T ss_pred hhhhhccccCCcchhhHHHHhhhh-hccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCC
Confidence 5443221110 0 011111111 111122222211222111 011122355556666666666666666543332211
Q ss_pred ----CceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 377 ----NAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 377 ----~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
....+.+.+++ ....++.. +++++||.+..|... -+.||+|++ .++++++++++.|+++
T Consensus 290 ~~~rs~~v~~f~~~~~~~~~~~~~-~l~~~Gi~~~~G~~~----~g~~Ris~~~~~t~edV~~li~~l~e~ 355 (360)
T d1bjna_ 290 KRNRSRMNVPFQLADSALDKLFLE-ESFAAGLHALKGHRV----VGGMRASIYNAMPLEGVKALTDFMVEF 355 (360)
T ss_dssp GGGBCSSEEEEEESSGGGHHHHHH-HHHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccceEEEEEcCCcccHHHHHH-HHHHCCCEeecCCCc----cCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 22356677874 34444554 556679999888421 134999973 4899999999999875
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.56 E-value=9.9e-14 Score=133.75 Aligned_cols=336 Identities=12% Similarity=0.069 Sum_probs=183.8
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.+++++|+..+. ..+ ..+|.+.+++++.+.+.. ....+ ......+++.+....+ ..+.+.+++++++
T Consensus 50 ~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~-----~~~~~----~~~~~~la~~~~~~~~-~~~~v~f~~sGse 119 (427)
T d2gsaa_ 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT-----SFGAP----CALENVLAEMVNDAVP-SIEMVRFVNSGTE 119 (427)
T ss_dssp TSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCS-----CCSSC----CHHHHHHHHHHHHHST-TCSEEEEESSHHH
T ss_pred CCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcC-----ccccc----hhHHHHHHHHHHhhCC-ccccccccCCcHH
Confidence 467899987663 332 267899999999886421 11111 2344555665544223 3478899999999
Q ss_pred HHHH-HH--HhcCCCCEEEEeCCCchhhHhHHHHhccccc----cccc-c---CccceeEEeecCCCCCccCCCCC-CCC
Q 013521 147 DISR-LQ--MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGK----FLKE-T---GKYRNIVYMNCRPENNFFPDLST-TSR 214 (441)
Q Consensus 147 al~~-l~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~----~~~~-~---~~~~~v~~v~~~~~~~~~~~~~~-~~~ 214 (441)
|+.. +. ........|+....+|++....+......+. +... . ....+....+...-..+...+.+ ..+
T Consensus 120 A~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 199 (427)
T d2gsaa_ 120 ACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGE 199 (427)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTT
T ss_pred HHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCC
Confidence 9886 42 2234557899999999886433322211000 0000 0 00011222222110000000111 134
Q ss_pred ccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 215 TDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 215 ~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
+.+|+ ..| +.-.|. ..|++.+++|.++|++||+++|.||++..|. .+.......++-.|| | -+++|.+| .|
T Consensus 200 iaavi-~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r-~g~~~~~~~~gi~PD--i--~~~gK~lg-gG 272 (427)
T d2gsaa_ 200 IAGVI-LEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFR-IAYGGVQEKFGVTPD--L--TTLGKIIG-GG 272 (427)
T ss_dssp EEEEE-ECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTT-TBTTCHHHHTTCCCS--E--EEECGGGG-TT
T ss_pred eEEEE-EcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccce-ecccchHHhcCCCHH--H--HhhhhccC-CC
Confidence 55544 466 333464 5688899999999999999999999998763 332222223333455 3 34889998 89
Q ss_pred ceeEEEEeeccccccCCchhHHHHHH---HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH----
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFNR---IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF---- 365 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L---- 365 (441)
+.+|.+++++++. +.+.. .....+.+.++++..|+.+.|+.-.. +...+..+++.+++.+.|
T Consensus 273 ~p~~a~~~~~~i~--------~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~---~~l~~~~~~~g~~l~~~L~~l~ 341 (427)
T d2gsaa_ 273 LPVGAYGGKREIM--------QLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIA 341 (427)
T ss_dssp SCCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeeeehHHHH--------HHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhh---hhHHhhhhHHHHHHHHHHHHHH
Confidence 9999999888774 21211 11223345788888888887762111 112233333333333333
Q ss_pred HhCCCeeeC-CCCceEEEEEc---CCC--------Ch---HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHH
Q 013521 366 QSLGLKVNG-GKNAPYVWVQF---PGS--------SS---WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYI 430 (441)
Q Consensus 366 ~~~g~~~~~-~~~~~~~~~~~---~~~--------~~---~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~ 430 (441)
++.++.... ..++++ .+.+ +.. +. ..+...+++ +||.+.|+.. .. +-+++..+++++
T Consensus 342 ~~~~~~~~v~~~ggm~-~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~-~Gv~l~p~~~-----~~-~~~~l~~Te~dI 413 (427)
T d2gsaa_ 342 QETGHAACGGQVSGMF-GFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQF-----EA-GFTSLAHTEEDI 413 (427)
T ss_dssp HHTTCCCEEEEETTEE-EEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT-----SC-EECCTTCCHHHH
T ss_pred hhcCCCcEEcccCCeE-EEEEeccCCCCHHHhhcccHHHHHHHHHHHHH-CCEEECCCCC-----cc-eeCCCCCCHHHH
Confidence 344432211 124433 2222 111 11 124445565 5999988531 12 225666799999
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
++++++|++++
T Consensus 414 d~~l~al~~al 424 (427)
T d2gsaa_ 414 DATLAAARTVM 424 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=5.1e-13 Score=125.65 Aligned_cols=214 Identities=13% Similarity=0.100 Sum_probs=143.8
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCcccee
Q 013521 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNI 194 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v 194 (441)
-...|.+.+++.- ..+..++++++++|+..++.++.+||.|++....|.+....+...-.+.. +++
T Consensus 56 T~~~lE~~la~LE------~~~~a~~~sSGmaAi~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~g--------i~~ 121 (393)
T d1n8pa_ 56 NRENLERAVAALE------NAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHG--------VET 121 (393)
T ss_dssp HHHHHHHHHHHHT------TCSEEEEESCHHHHHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTC--------SCC
T ss_pred HHHHHHHHHHHHh------CCceEEEecCchhHHHhhhhcccCCCeeeeeeeecccchhhhhhhhhccc--------cee
Confidence 3455666666552 23556666666888887778889999999999999998777766543322 356
Q ss_pred EEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHH----HcCcEEEEcccccccccCCCCCcccc
Q 013521 195 VYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAK----ANGSIIVYDSAYAAYITDPSPRSIYE 270 (441)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~----~~~~~ii~De~~~~~~~~~~~~~~~~ 270 (441)
..++.+.+ .+. ....+++++|++-+|.||+..+.+ +++|+++|+ ++|+++|+|..+...... .++ .
T Consensus 122 ~~~~~~~~-~~~--~~i~~~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~~---~Pl-~ 191 (393)
T d1n8pa_ 122 SFTNDLLN-DLP--QLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS---NPL-N 191 (393)
T ss_dssp EEESSHHH-HHH--HHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC---CGG-G
T ss_pred EEeecchH-HHH--HHhhhhcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCcccC---Cch-h
Confidence 66543211 111 112478999999999999999999 778888887 678999999998742211 122 1
Q ss_pred cCCCcceeEEEecCCcccCC-ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHH
Q 013521 271 IPGAREVAIEISSFSKFAGF-TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRT 349 (441)
Q Consensus 271 ~~~~~~~~i~i~S~SK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 349 (441)
+ +-.|++.|++|.++- ...-.|.++.+++.+ .+.+...+.......++.....+.. +.+-+.-
T Consensus 192 ~----GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~-------~~~l~~~~~~~G~~~~p~~a~ll~r-----gl~Tl~l 255 (393)
T d1n8pa_ 192 F----GADIVVHSATKYINGHSDVVLGVLATNNKPL-------YERLQFLQNAIGAIPSPFDAWLTHR-----GLKTLHL 255 (393)
T ss_dssp G----TCSEEEEETTTTTTCSSCCCCEEEEESCHHH-------HHHHHHHHHHHCCCCCHHHHHHHHH-----HHTTHHH
T ss_pred h----CCCEEEEccccccCCCCccccceeeecchhH-------HHHHHHHHhhcCCCCChHHHHHHHh-----CCcchhh
Confidence 2 223999999998863 234567777665543 4556656665566667765443333 3344566
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 013521 350 VIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~ 368 (441)
+.++..++...+.+.|+.+
T Consensus 256 R~~~~~~nA~~lA~~L~~~ 274 (393)
T d1n8pa_ 256 RVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7788888899999999754
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.52 E-value=2.8e-12 Score=120.68 Aligned_cols=214 Identities=14% Similarity=0.134 Sum_probs=140.5
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccce
Q 013521 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN 193 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~ 193 (441)
-...|.+.|++.- ..+..++++++++|+.. ++.++++||.|++....|.+....+...-.+.. ++
T Consensus 60 T~~~le~~la~LE------g~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g--------i~ 125 (394)
T d1e5ea_ 60 TVSNLEGKIAFLE------KTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFG--------IQ 125 (394)
T ss_dssp HHHHHHHHHHHHH------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT--------CE
T ss_pred HHHHHHHHHHHHh------CCcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccc--------ee
Confidence 4455666666643 24577888888899986 789999999999999999886555443221111 47
Q ss_pred eEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHH-HcCcEEEEcccccccccCCCCCcccccC
Q 013521 194 IVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAK-ANGSIIVYDSAYAAYITDPSPRSIYEIP 272 (441)
Q Consensus 194 v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~-~~~~~ii~De~~~~~~~~~~~~~~~~~~ 272 (441)
+..++..+...+...+ .+++++|++-+|.|||..+.+ ++++++.++ ++|+++|+|..+.....- .++ .+
T Consensus 126 ~~~~d~~d~~~~~~~i--~~~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~~---~Pl-~~- 195 (394)
T d1e5ea_ 126 VDFINTAIPGEVKKHM--KPNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT---NPV-DF- 195 (394)
T ss_dssp EEEECTTSTTHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC---CGG-GG-
T ss_pred eeccCCCCHHHHHHhh--cccccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcccC---Cch-hc-
Confidence 7777665432222111 478999999999999999999 777777665 468999999998742111 112 12
Q ss_pred CCcceeEEEecCCcccCC-ccceeEEEEeeccccccCCchhHHHHH--HHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHH
Q 013521 273 GAREVAIEISSFSKFAGF-TGVRLGWTVVPEELRYSNGYPVIKDFN--RIVCTCFNGASNIVQAGGLACLSPDGFQALRT 349 (441)
Q Consensus 273 ~~~~~~i~i~S~SK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 349 (441)
+-.|++.|.+|.++- ...-.|.++++++.. ...+ .++.......++.....+. .+.+.+.-
T Consensus 196 ---GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~--------~~~~~~~~~~~~G~~lsp~~a~ll~-----rgl~TL~l 259 (394)
T d1e5ea_ 196 ---GVDVVVHSATKYINGHTDVVAGLICGKADLL--------QQIRMVGIKDITGSVISPHDAWLIT-----RGLSTLNI 259 (394)
T ss_dssp ---TCSEEEEETTTTTTCSSCCCCEEEEECHHHH--------HHHHHTCCCCCCCCCCCHHHHHHHH-----HHHTTHHH
T ss_pred ---CCCEEEechhhhcCCCcccccccccchhhHH--------HHHHHHHHHHhhCCCCChHHHHHHH-----hhchhHHH
Confidence 224999999998863 223357777766652 2221 1122233345555533333 33444577
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 013521 350 VIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~ 368 (441)
+.++..++...+.+.|+++
T Consensus 260 Rm~r~~~nA~~lA~~L~~h 278 (394)
T d1e5ea_ 260 RMKAESENAMKVAEYLKSH 278 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 7888899999999999988
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.50 E-value=1.7e-12 Score=122.35 Aligned_cols=329 Identities=12% Similarity=0.095 Sum_probs=171.4
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCC-CC---CCCCC--CcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK-GY---KGYGA--EQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQ 145 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~-~~---~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~ 145 (441)
.++||+.|. .+.|++|+++|.+.+.++...+ +. .+.++ ..-..+.|+.+++++ +++.+ .|++++|++
T Consensus 3 ~~~nF~pGP--~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~----~~~~~~~i~~~~gt~ 76 (360)
T d1w23a_ 3 QVFNFNAGP--SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELL----QIPNDYQILFLQGGA 76 (360)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSHH
T ss_pred ceeEeCCCC--cCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHh----CCCCCCEEEEeCCcH
Confidence 577888875 3467999999999775543211 11 11111 112345666666665 77655 688888888
Q ss_pred HHHHH--HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCcc-CCCCC-CCCccEEEEc
Q 013521 146 SDISR--LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFF-PDLST-TSRTDIIFFC 221 (441)
Q Consensus 146 ~al~~--l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~-~~~~~-~~~~~~v~i~ 221 (441)
++... ...+..+++.+++....+.+... ...+...+ ..++........... .++.. ....+...+
T Consensus 77 ~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 145 (360)
T d1w23a_ 77 SLQFTMLPMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG---------ETHIAASTKANSYQSIPDFSEFQLNENDAYL- 145 (360)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS---------EEEEEEECGGGTSCSCCCGGGCCCCTTEEEE-
T ss_pred HHHHHHHHhhhcccCcccceeeccchhhhh-HHHHHHhh---------hcceeeccccccccchhhhhhccccccccee-
Confidence 77664 35566888888888776665432 22222211 133333322211111 12221 233444333
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
+|-||.+.+ +.+|.++|+++|+++|+|.+.+-... +..+..+ + +.+.|++|..+++| ..|+++.+
T Consensus 146 --~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~g~~---~id~~~~----~--vd~~~~~~~k~~~~-~~~~~~~~ 210 (360)
T d1w23a_ 146 --HITSNNTIY---GTQYQNFPEINHAPLIADMSSDILSR---PLKVNQF----G--MIYAGAQKNLGPSG-VTVVIVKK 210 (360)
T ss_dssp --EEESEETTT---TEECSSCCCCCSSCEEEECTTTTTSS---CCCGGGC----S--EEEEETTTTTSCTT-CEEEEEEH
T ss_pred --EecCCcccc---ceeeeeccccceeeEEeecccccccc---ccccccc----c--ceEEeeccccccCC-cceeeEec
Confidence 567899888 67888899999999999999884222 3333222 3 44456666665444 34555544
Q ss_pred ccccccCCch-hHHHHH-HHHh-hhcCCCcHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC
Q 013521 302 EELRYSNGYP-VIKDFN-RIVC-TCFNGASNIVQAGGLACL---SPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNG 374 (441)
Q Consensus 302 ~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~~~~a~~~~l---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 374 (441)
+......... ....+. .... .....+......+....+ .+.+. .....++.+............. ......
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (360)
T d1w23a_ 211 DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGG--AEAIAKQNEEKAKIIYDTIDESNGFYVGH 288 (360)
T ss_dssp HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHHTTTTSSEES
T ss_pred hhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 4332111100 000111 1111 111112222211111111 11111 1333334444444444444433 222211
Q ss_pred ----CCCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 375 ----GKNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 375 ----~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
......+.+.+++. ...++.. .+.++||.+..|.... +.||+|+++ +.|+++++++.|+++
T Consensus 289 ~~~~~rS~~vvsf~i~~~~~~~~~~~-~l~~~GI~~~~G~~~~----ggiRiS~~~~~t~e~V~~Li~~~~~~ 356 (360)
T d1w23a_ 289 AEKGSRSLMNVTFNLRNEELNQQFLA-KAKEQGFVGLNGHRSV----GGCRASIYNAVPIDACIALRELMIQF 356 (360)
T ss_dssp SCGGGBCSSEEEEECSSHHHHHHHHH-HHHHTTEESCBCCTTT----CSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CChhhcceeEEEEEcCCCccHHHHHH-HHHHCCCeeeeCCCcc----CcEEEEeeCCCCHHHHHHHHHHHHHH
Confidence 11223577788742 3345554 4566799998886432 349999855 899999999999875
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.49 E-value=9e-13 Score=128.23 Aligned_cols=311 Identities=11% Similarity=0.041 Sum_probs=192.5
Q ss_pred CCCCCcCcHHHHHHHHHHHhhhCCCCC---------CcEEEcCCcHHHHHH-HHH----hc------CCC---------C
Q 013521 109 GYGAEQGNMALRTAIADKFYKDMGIEG---------DEIFISDGAQSDISR-LQM----LL------GSN---------V 159 (441)
Q Consensus 109 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~---------~~I~~t~G~~~al~~-l~~----l~------~~g---------d 159 (441)
.|...+...++.+.+.+|+.+.+|.+. ..-++|+|++.+... +.. .+ .+| -
T Consensus 104 ~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~ 183 (476)
T d1js3a_ 104 SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183 (476)
T ss_dssp SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHE
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCce
Confidence 444455778899999999988666532 356788888877654 321 11 111 1
Q ss_pred EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--------CCCccEEEEcCCCCccccC
Q 013521 160 TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--------TSRTDIIFFCSPNNPTGHA 230 (441)
Q Consensus 160 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--------~~~~~~v~i~~p~NPtG~~ 230 (441)
.|++.+-+|.++...+..+| +.+..+++++++.++++ +++ ...+-+|+.+..++.||.+
T Consensus 184 vv~~s~~~H~Si~ka~~~lG------------l~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~i 251 (476)
T d1js3a_ 184 VAYASDQAHSSVERAGLIGG------------VKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSF 251 (476)
T ss_dssp EEEEETTCCHHHHHHHHHHT------------CEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB
T ss_pred EEEecccccHHHHHHHHhcC------------ceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceee
Confidence 57888999999999999999 57888998765443322 111 1234456666779999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcccccccccC-CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC
Q 013521 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309 (441)
Q Consensus 231 ~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~-~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~ 309 (441)
=| +++|+++|++||+++.+|.+|+.+..- ...... +.+.+.-.-+.-+++|.++ ....+|.+..++.......
T Consensus 252 Dp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~--~~gi~~aDSit~d~HK~l~-~P~~~g~~l~r~~~~~~~~ 325 (476)
T d1js3a_ 252 DN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHL--LNGVEFADSFNFNPHKWLL-VNFDCSAMWVKRRTDLTGA 325 (476)
T ss_dssp CC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGG--GTTGGGCSEEEECHHHHSS-CCSSCEEEEESCHHHHHGG
T ss_pred cc---HHHHHHHHHhcCcEEEEecccchhhhhhcchhhh--hcCCcccceeeecCccccc-cCCcceeecccchHHHHHH
Confidence 88 889999999999999999999875432 222222 1222222356668999997 5557888887764320000
Q ss_pred chhHH-HHHHHHh----------hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCC
Q 013521 310 YPVIK-DFNRIVC----------TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKN 377 (441)
Q Consensus 310 ~~~~~-~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 377 (441)
..... .+..... ....+........+-..+...+.+.++++.++..+..+++.+.|++. ++++..++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~ 405 (476)
T d1js3a_ 326 FKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT 405 (476)
T ss_dssp GC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCC
T ss_pred HhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCc
Confidence 00000 0000000 00001111111112222322344567888888888999999999988 898887777
Q ss_pred ceEEEEEcCCCCh--HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee---cCHHHHHHHHHHHHhh
Q 013521 378 APYVWVQFPGSSS--WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 378 ~~~~~~~~~~~~~--~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~---~~~~~~~~~l~~l~~~ 440 (441)
-+.+.+++.+.+. ..+.+++.++..+.+.+.. -.+..++|+++. +++++++.+++.|+++
T Consensus 406 l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~---~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~ 470 (476)
T d1js3a_ 406 LGLVCFRLKGSDGLNEALLERINSARKIHLVPCR---LRGQFVLRFAICSRKVESGHVRLAWEHIRGL 470 (476)
T ss_dssp SSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEE---ETTEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEccCChHHHHHHHHHHHhcCCEEEeeee---ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7788888864332 3566666655334444321 123458999974 3688999999999874
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.47 E-value=1.3e-11 Score=116.64 Aligned_cols=302 Identities=14% Similarity=0.087 Sum_probs=184.3
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCC--CEEE
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSN--VTVA 162 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~g--d~Vl 162 (441)
.++-.+++.+.+. .+. |...+-..++.+.+++++ |. ..++.++++++|+.+ +.++ +.+| |+|+
T Consensus 11 ~~~~~~~v~~~l~-----~~~--~~~G~~v~~fE~~~~~~~----g~--k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi 77 (371)
T d2fnua1 11 DKEDKKAVLEVLN-----SKQ--LTQGKRSLLFEEALCEFL----GV--KHALVFNSATSALLTLYRNFSEFSADRNEII 77 (371)
T ss_dssp CHHHHHHHHHHHT-----SSC--CSSSHHHHHHHHHHHHHH----TC--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEE
T ss_pred CHHHHHHHHHHHc-----CCC--ccCCHHHHHHHHHHHHHH----Cc--CeEEEEecHHHHHHHHHHHhcccCCCCCeee
Confidence 3556677888775 333 222335678899999987 43 477888888889887 4444 3444 5899
Q ss_pred EeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccccCCCHHHHHHH
Q 013521 163 VQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTGHAATWQQLKKL 239 (441)
Q Consensus 163 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i 239 (441)
++.-+|+.....+...| .+++.++++.+....++ ++. .+++++|++++ ..|...+ +.+|
T Consensus 78 ~p~~t~~a~~~ai~~~G------------~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh---~~G~~~~---~~~i 139 (371)
T d2fnua1 78 TTPISFVATANMLLESG------------YTPVFAGIKNDGNIDELALEKLINERTKAIVSVD---YAGKSVE---VESV 139 (371)
T ss_dssp ECSSSCTHHHHHHHHTT------------CEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEEC---GGGCCCC---HHHH
T ss_pred cccccccccceeeeccC------------cccccccccccccccchhhhhhccchhhcccccc---ccccccc---cccc
Confidence 99999999999999999 68999999876533221 222 57899988754 4677777 7888
Q ss_pred HHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecC--CcccCCccceeEEEEeeccccccCCchhHHHHH
Q 013521 240 VEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSF--SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFN 317 (441)
Q Consensus 240 ~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 317 (441)
.++|+++++++|+|.+++....-. ......+ .+ +.+.|| +|.++ +| .-|.++++++.+ .+.+.
T Consensus 140 ~~~~~~~~i~lIEDaaqa~Ga~~~-~~~~G~~---g~--~~~~Sf~~~K~l~-~g-~GG~i~t~~~~~-------~~~~~ 204 (371)
T d2fnua1 140 QKLCKKHSLSFLSDSSHALGSEYQ-NKKVGGF---AL--ASVFSFHAIKPIT-TA-EGGAVVTNDSEL-------HEKMK 204 (371)
T ss_dssp HHHHHHHTCEEEEECTTCTTCEET-TEETTSS---SS--EEEEECCTTSSSC-CS-SCEEEEESCHHH-------HHHHH
T ss_pred cccccccchhhccchhhccCceec-cccCCcc---cc--ccccccccccccc-cc-cceEEEeechhh-------hhhcc
Confidence 999999999999999998533211 1222222 22 455666 79886 44 368888887664 33443
Q ss_pred HHHhhh---------------c-CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCC----C
Q 013521 318 RIVCTC---------------F-NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGG----K 376 (441)
Q Consensus 318 ~~~~~~---------------~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~ 376 (441)
..+... + .-.+.+....+...|+ .+++..++-+++.+.+.+.|.+. ++....+ .
T Consensus 205 ~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~-----~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~ 279 (371)
T d2fnua1 205 LFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLK-----KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDK 279 (371)
T ss_dssp HHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhh-----hccchhhhhhhhhhhhcccccccccccccccccccc
Confidence 332211 0 1133333333333332 34555555556677777888776 4443221 1
Q ss_pred Cce-EEEEEcCC---CChHHHHHHHHHhcCeEEeCCCC-------cC---CCC---------CCeEEEEeec--CHHHHH
Q 013521 377 NAP-YVWVQFPG---SSSWDVFAEILEKTHILTIPGSG-------FG---PGG---------NEHIRVSAFG--HREYIS 431 (441)
Q Consensus 377 ~~~-~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~-------f~---~~~---------~~~iRls~~~--~~~~~~ 431 (441)
..+ ...+.+.. ....++.+.| +++||.+++... |. ..+ ...+.|-+.. +.++++
T Consensus 280 ~~~~~~~i~~~~~~~~~r~~~~~~L-~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~ 358 (371)
T d2fnua1 280 SSNHLYPILMHQKFFTCKKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQ 358 (371)
T ss_dssp CCCSCEEEEECGGGGGGHHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred cccccccccccccchhHHHHHHHHH-HHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHH
Confidence 111 12333331 1223455555 556999886532 10 111 1346565533 789999
Q ss_pred HHHHHHHhh
Q 013521 432 EACRRLKNF 440 (441)
Q Consensus 432 ~~l~~l~~~ 440 (441)
..++.|.++
T Consensus 359 ~I~~~i~~~ 367 (371)
T d2fnua1 359 NIAHSVLKT 367 (371)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.43 E-value=1.5e-11 Score=116.42 Aligned_cols=177 Identities=15% Similarity=0.184 Sum_probs=123.1
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEEeCCCc
Q 013521 91 TSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAVQDPSF 168 (441)
Q Consensus 91 ~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv~~p~y 168 (441)
++++.+.+.. ..+.+.++ -...+.+.+++++ +. ...+.++++|+|+.+ +..+ +++||+|+++..+|
T Consensus 4 ~~~~~~~l~~----~~~~~~G~--~~~~fE~~~~~~~----~~--~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~ 71 (374)
T d1o69a_ 4 LKYIEEVFKS----NYIAPLGE--FVNRFEQSVKDYS----KS--ENALALNSATAALHLALRVAGVKQDDIVLASSFTF 71 (374)
T ss_dssp HHHHHHHHHH----TTTSCTTH--HHHHHHHHHHHHH----CC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred HHHHHHHHhc----CCcCCCCH--HHHHHHHHHHHHH----Cc--CeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcch
Confidence 3566666653 33323333 4688999999987 43 478888888888887 6665 78999999999999
Q ss_pred hhhHhHHHHhccccccccccCccceeEEeecCCCCCc-cCCC-----CCCCCccEEEEcCCCCccccCCCHHHHHHHHHH
Q 013521 169 PAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF-FPDL-----STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEF 242 (441)
Q Consensus 169 ~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~-~~~~-----~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~ 242 (441)
+.....+..+| ..+++++++++... ..+. ...++++++++++. .|.... +.+|.++
T Consensus 72 ~a~~~~~~~~g------------~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d---~~~i~~~ 133 (374)
T d1o69a_ 72 IASVAPICYLK------------AKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHL---YGNAAK---MDEIVEI 133 (374)
T ss_dssp GGGTHHHHHTT------------CEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCC---HHHHHHH
T ss_pred HhhHHHHhhcc------------ceeEecccccccccccccccccchhccccccccccccc---ccchhh---hHHHHHH
Confidence 99999999999 68999998754221 1111 12467889887544 565556 8899999
Q ss_pred HHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecC--CcccCCccceeEEEEeecccc
Q 013521 243 AKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSF--SKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 243 a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~G~r~G~l~~~~~~~ 305 (441)
|+++|+.||+|.+++....-. ...+..+ .+ +.+.|| +|.++..| -|.+++.++.+
T Consensus 134 ~~~~~i~vIED~a~a~g~~~~-~~~~G~~---gd--~~~fSf~~~K~l~tge--GG~i~tnn~~~ 190 (374)
T d1o69a_ 134 CKENDIVLIEDAAEALGSFYK-NKALGTF---GE--FGVYSYNGNKIITTSG--GGMLIGKNKEK 190 (374)
T ss_dssp HHHTTCEEEEECTTCTTCEET-TEETTSS---SS--EEEEECCTTSSSCCSS--CEEEEESCHHH
T ss_pred hhccCcchhhhhhhhhcceEC-CeecCCC---Cc--eEEEeccCcccccccc--ceeehhhhHHH
Confidence 999999999999998533211 1222222 22 666677 58886333 58888876654
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.42 E-value=8.7e-12 Score=120.98 Aligned_cols=340 Identities=9% Similarity=-0.011 Sum_probs=184.9
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.+++++|+..|. ..+ ..+|.+.+++.+.+..... .....+. ......+.+.+++.+....+-..+.+++++++++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~-~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGse 128 (461)
T d1ohwa_ 51 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTF-INRPALG-ILPPENFVEKLRESLLSVAPKGMSQLITMACGSC 128 (461)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHH-HCCCCTT-TSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHH
T ss_pred CCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhh-ccccccc-ccchHHHHHHHHHHHHhhhccCcceeeeecchhh
Confidence 356788876542 222 2568889999887654221 0111111 1122345667777665433445678999999999
Q ss_pred HHHH-HHHh----------------------------cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEe
Q 013521 147 DISR-LQML----------------------------LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYM 197 (441)
Q Consensus 147 al~~-l~~l----------------------------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v 197 (441)
|+.. +... ..+...|+...-+|++....+......................
T Consensus 129 Ave~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~ 208 (461)
T d1ohwa_ 129 SNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIA 208 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEE
T ss_pred hhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCccc
Confidence 9886 4211 1234579999999998644443332111000000000000111
Q ss_pred ecCCC-CCccC--------------CCC--------CCCCccEEEEcCC-CCccc-cCCCHHHHHHHHHHHHHcCcEEEE
Q 013521 198 NCRPE-NNFFP--------------DLS--------TTSRTDIIFFCSP-NNPTG-HAATWQQLKKLVEFAKANGSIIVY 252 (441)
Q Consensus 198 ~~~~~-~~~~~--------------~~~--------~~~~~~~v~i~~p-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~ 252 (441)
+.... ..... +++ ...++.+|+ ..| +...| ...|++.+++|.++|++||+++|.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavi-vEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~ 287 (461)
T d1ohwa_ 209 PFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGII-VEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV 287 (461)
T ss_dssp CCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE-ECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceee-eccccccccccCchhhHHHHHHHHHHhhCcceec
Confidence 11000 00000 001 123455555 466 55455 457899999999999999999999
Q ss_pred cccccccccCCCCCcccccC--CCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHH
Q 013521 253 DSAYAAYITDPSPRSIYEIP--GAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNI 330 (441)
Q Consensus 253 De~~~~~~~~~~~~~~~~~~--~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (441)
||++..|...+.......+. ..+| ++ +++|.++ . |+......+. . ........+++.+++
T Consensus 288 DEV~tG~gRtG~~~~~e~~gi~~~PD--iv--~~gK~l~-~----g~~~~~~~~~-~--------~~~~~~~~T~~g~p~ 349 (461)
T d1ohwa_ 288 DEVQTGGGSTGKFWAHEHWGLDDPAD--VM--TFSKKMM-T----GGFFHKEEFR-P--------NAPYRIFNTWLGDPS 349 (461)
T ss_dssp ECTTTCSSTTSSSSGGGGGCCSSCCS--EE--EECGGGS-S----EEEEECGGGS-C--------SSTTSSCCSCSSCHH
T ss_pred cccccccccccccccccccccccCch--hh--hhhhccc-c----cccccccccc-c--------ccccccccccccccc
Confidence 99998776554332222221 1244 33 5889886 3 4444433321 1 011112233456778
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-----C-CeeeCCCCceEEEEEcCCCCh-HHHHHHHHHhcCe
Q 013521 331 VQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-----G-LKVNGGKNAPYVWVQFPGSSS-WDVFAEILEKTHI 403 (441)
Q Consensus 331 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g-~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~gi 403 (441)
+..++.+.|+.-.. +++.++.++..+++.+.|.++ . +.-.. ..|.++-++++.... .++...+++ +|+
T Consensus 350 ~~aaa~a~l~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vr-G~Gl~~~ie~~~~~~~~~i~~~~~~-~Gl 424 (461)
T d1ohwa_ 350 KNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVR-GRGTFCSFDTPDESIRNKLISIARN-KGV 424 (461)
T ss_dssp HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE-EETTEEEEECSSHHHHHHHHHHHHH-TTE
T ss_pred cchhhcccchhhhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEee-eeeEEEEEEcCCHHHHHHHHHHHHH-CCe
Confidence 88888877762111 233344444445555555443 1 22122 246677788874322 345566555 599
Q ss_pred EEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 404 LTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 404 ~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+.+. +++.|||. +..+++++++++++|.++|
T Consensus 425 l~~~~------~~~~ir~~PpL~it~~eid~~~~~l~~~l 458 (461)
T d1ohwa_ 425 MLGGC------GDKSIRFRPTLVFRDHHAHLFLNIFSDIL 458 (461)
T ss_dssp ECEEE------TTTEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEeeC------CCCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence 98773 24679987 5568999999999998864
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=4.5e-12 Score=123.81 Aligned_cols=326 Identities=15% Similarity=0.136 Sum_probs=182.4
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
.+|||-......+..+..+ ..+. .+-..|+.++...+|.+++++++ |. +.+++++++++|..+ +
T Consensus 42 ~~idl~sd~~t~~~~~~~~----a~~~-----~gd~~Y~~~~~~~~le~~~a~l~----G~--~~~~~~~sGt~A~~~a~ 106 (467)
T d2v1pa1 42 VFIDLLTDSGTGAVTQSMQ----AAMM-----RGDEAFSGSRSYYALAESVKNIF----GY--QYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp CSEECSCCTTCSCCCHHHH----HHTT-----SCCCCSSSCHHHHHHHHHHHHHT----CC--SEEEEECSSTTTHHHHH
T ss_pred eeeeccccccchhhHHHHH----hhcc-----ccchhhcCCchHHHHHHHHHHHH----CC--CEEEECCCCHHHHHHHH
Confidence 3677765554443334333 2222 22235877788899999999985 53 466777777777665 5
Q ss_pred HHhcCCCC---------EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCc--------cCCCCC---
Q 013521 152 QMLLGSNV---------TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF--------FPDLST--- 211 (441)
Q Consensus 152 ~~l~~~gd---------~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~--------~~~~~~--- 211 (441)
..++++|| .+......|..........| ..+..++.+..... ..|+++
T Consensus 107 ~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 174 (467)
T d2v1pa1 107 PVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQING------------CTVRNVYIKEAFDTGVRYDFKGNFDLEGLER 174 (467)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTT------------CEEEECBCTTTTCTTSCCTTTTCBCHHHHHH
T ss_pred HHHhhccceEecCCCCcEEEEecccccccHHHHHHcC------------CeeeecccccccccccccccccCCCHHHHHH
Confidence 65555544 34444545555555566666 46666666532111 111111
Q ss_pred ------CCCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCcEEEEcccccccc----------cCCCCCcccccC--
Q 013521 212 ------TSRTDIIFFCSPNNPT-GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI----------TDPSPRSIYEIP-- 272 (441)
Q Consensus 212 ------~~~~~~v~i~~p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~----------~~~~~~~~~~~~-- 272 (441)
...++++++.+.+|.. |.+++.+++++|.++|++||+++|+|+++.... +. ..++....
T Consensus 175 ~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~--~~~~~~i~~~ 252 (467)
T d2v1pa1 175 GIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYK--DWTIEQITRE 252 (467)
T ss_dssp HHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGT--TSCHHHHHHH
T ss_pred HHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhcccccccccccccc--CCcccccchh
Confidence 1345677776776654 678899999999999999999999999975211 11 11111110
Q ss_pred CCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhh--------hcCCCcHHHHHHHHHhcCCCcH
Q 013521 273 GAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCT--------CFNGASNIVQAGGLACLSPDGF 344 (441)
Q Consensus 273 ~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~l~~~~~ 344 (441)
-.....++..|.+|.++ +...|++.++++.+ .......+.. ...+.+.....+....+.....
T Consensus 253 ~~~~~d~~s~s~~K~~~--~~~gg~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 323 (467)
T d2v1pa1 253 TYKYADMLAMSAKKDAM--VPMGGLLCMKDDSF-------FDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN 323 (467)
T ss_dssp HGGGCSEEEEESSSTTC--CSSCEEEEECSGGG-------HHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC
T ss_pred hcccCCEEEecCCCCCC--CCCceeEEecchhh-------hhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhh
Confidence 01122366678889876 34467777776653 1111111111 1112222232222222221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEE----cCC-----CChHHHHHHHHHhcCeEEeCCCCc----
Q 013521 345 QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQ----FPG-----SSSWDVFAEILEKTHILTIPGSGF---- 411 (441)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~ll~~~gi~v~pg~~f---- 411 (441)
....++..++.+++.+.|.+.+..+.+. .+..+.+. ++. .........++.+.||.......+
T Consensus 324 ---~~~~~~~~~~~~~l~~~L~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~ 399 (467)
T d2v1pa1 324 ---LDWLAYRIAQVQYLVDGLEEIGVVCQQA-GGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGR 399 (467)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTCCEEEE-CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCB
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCcccCC-CccceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeeccccccccc
Confidence 3344455667888999998887665442 33333322 121 123455677777889865422111
Q ss_pred -------CCCCCCeEEEEee---cCHHHHHHHHHHHHhh
Q 013521 412 -------GPGGNEHIRVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 412 -------~~~~~~~iRls~~---~~~~~~~~~l~~l~~~ 440 (441)
.+.....+||++. .++++++..++.|+++
T Consensus 400 ~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v 438 (467)
T d2v1pa1 400 DPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438 (467)
T ss_dssp CTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHH
T ss_pred ccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 1233568999863 2789999999998875
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=2.2e-10 Score=108.62 Aligned_cols=354 Identities=16% Similarity=0.135 Sum_probs=209.1
Q ss_pred CchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhh
Q 013521 53 YLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKD 130 (441)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~ 130 (441)
....++.+.......+..+...--++.|..+.-.|+.+ +.+...-. +. ..++-|+| .+|..++.-.+..++.+-
T Consensus 45 ~sE~e~~r~~~~ls~kN~~~~~~fig~G~~~~~~p~~i-~~~~~~~~-~~--t~ytPyqpE~sQG~Lq~l~e~q~~l~el 120 (437)
T d1wyua1 45 LPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVV-QALAARGE-FL--TAYTPYQPEVSQGVLQATFEYQTMIAEL 120 (437)
T ss_dssp CCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHH-HHHHTSHH-HH--HCCSCCSGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCcCccccCcccCCceeCHHH-HHHHhChh-hh--hhCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666655554322111244555555566655 44433221 11 33444555 467777777777777764
Q ss_pred CCCCCCcEEEcCCcHHHHHHH-HHh-cCCCCEEEEeCCCchhhHhHH----HHhccccccccccCccceeEEeecCCCCC
Q 013521 131 MGIEGDEIFISDGAQSDISRL-QML-LGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLKETGKYRNIVYMNCRPENN 204 (441)
Q Consensus 131 ~~~~~~~I~~t~G~~~al~~l-~~l-~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~v~~v~~~~~~~ 204 (441)
.|.+.-+.-.-.|++.....+ +.. ....+.+++..-.++...... ...| ++++.++.+..+.
T Consensus 121 tGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g------------~~vv~v~~~~~~~ 188 (437)
T d1wyua1 121 AGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVG------------AKLLTLPLEGGRT 188 (437)
T ss_dssp HTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTT------------CEEEEECCBTTBC
T ss_pred hCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccce------------eeEEeeecccccc
Confidence 555555556778888877653 222 234568899998998875543 3345 5888888865432
Q ss_pred ccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecC
Q 013521 205 FFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSF 284 (441)
Q Consensus 205 ~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 284 (441)
...+ -.+++.++++.+||. .|..-+ +++|++++++.|.+++.|..- ..... -.+..++ +-+|++++
T Consensus 189 ~~~~--~~~~~Aavmi~~Pnt-~G~~ed---~~~i~~~~h~~G~l~~~~ad~--~al~~-l~~Pg~~----GaDi~~g~- 254 (437)
T d1wyua1 189 PLPE--VGEEVGAVVVQNPNF-LGALED---LGPFAEAAHGAGALFVAVADP--LSLGV-LKPPGAY----GADIAVGD- 254 (437)
T ss_dssp CCCC--CCTTEEEEEEESSCT-TSBCCC---HHHHHHHHHHTTCEEEEECCT--TGGGT-BCCHHHH----TCSEEEEE-
T ss_pred hhhh--hccceeEEEEccccc-cccccc---hHHHHHHhhhccceEEeeech--hhhhc-ccccccc----ccceEeec-
Confidence 2222 246889999999955 888743 889999999999988776422 11111 1111222 22377777
Q ss_pred CcccCC----ccceeEEEEeeccccccC-------------------C-chhHHHHHHHHhhhcCCCc-HHHHHHHHHhc
Q 013521 285 SKFAGF----TGVRLGWTVVPEELRYSN-------------------G-YPVIKDFNRIVCTCFNGAS-NIVQAGGLACL 339 (441)
Q Consensus 285 SK~~~~----~G~r~G~l~~~~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~l 339 (441)
+|.||. .|-..|++.+.+++++.- . ....+.+++.+.....+.+ .+....+...+
T Consensus 255 ~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~ 334 (437)
T d1wyua1 255 GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYL 334 (437)
T ss_dssp CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHH
T ss_pred cceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHh
Confidence 665443 345579999988775220 0 0011223333332222222 22222222333
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceE--EEEEcCCCChHHHHHHHHHhcCeEEeCCCC-cCCCC
Q 013521 340 SPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPY--VWVQFPGSSSWDVFAEILEKTHILTIPGSG-FGPGG 415 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~-f~~~~ 415 (441)
.-.+.+.+++..+....+..++.+.|.+. |++...+ +.+| +.++++ .+..++.++|++. |+.. |.. |....
T Consensus 335 ~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~-~~~f~ef~v~~~-~~~~~i~k~L~d~-G~~~--~~~~~~~~~ 409 (437)
T d1wyua1 335 AALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTP-KPFFNEFALALP-KDPEAVRRALAER-GFHG--ATPVPREYG 409 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSC-SSBCSEEEEECS-SCHHHHHHHHHHT-TCCC--CEECCTTSC
T ss_pred hhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCC-CCeeeEEEEECC-CCHHHHHHHHHhC-CCCC--CcccccCCC
Confidence 32445678888889999999999999987 7876543 3344 445554 3567777877765 8852 221 22223
Q ss_pred CCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 416 NEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 416 ~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
++.+.+++. .++++++++++.|++++
T Consensus 410 ~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 410 ENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 578889974 47999999999999875
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.96 E-value=3.6e-08 Score=94.43 Aligned_cols=352 Identities=14% Similarity=0.129 Sum_probs=194.1
Q ss_pred hHHHHHHHHHHHhcCCC--CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC---CcCcHHHHHHHHHHHhh
Q 013521 55 FPEISMRESEHIRKHPD--ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA---EQGNMALRTAIADKFYK 129 (441)
Q Consensus 55 ~~~~~~~~~~~~~~~~~--~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~l~~ 129 (441)
..++.+.......++.. ..++-+|.+... .+|.+.+.+.+ + ...+.-|+| .+|..+..=....++.+
T Consensus 46 E~El~r~~~~la~kN~~~~~~~~~lG~~~~h--y~P~v~~~~~~----~--~TaYTPYQPaEiSQG~LQalfEfQtmi~e 117 (471)
T d1wyub1 46 ELTLVRHYTGLSRRQVGVDTTFYPLGSCTMK--YNPKLHEEAAR----L--FADLHPYQDPRTAQGALRLMWELGEYLKA 117 (471)
T ss_dssp HHHHHHHHHHHHTTCCCTTTSCCCBTTTCCC--CCCHHHHHHHH----T--TSSCCTTSCGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccccCCccccCc--cCcchhhhHHH----H--HhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555432 355666655433 34566666654 1 145566776 44554444444444444
Q ss_pred hCCCCCCcEEEcCCcHHHHHH-H--HHhc-CCC----CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC
Q 013521 130 DMGIEGDEIFISDGAQSDISR-L--QMLL-GSN----VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP 201 (441)
Q Consensus 130 ~~~~~~~~I~~t~G~~~al~~-l--~~l~-~~g----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~ 201 (441)
..|.+--|.-+-.|+|..... + .+.. +.| ..+.+..+.+............ ..++.++.+.
T Consensus 118 LTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 186 (471)
T d1wyub1 118 LTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAG-----------YQVREIPSGP 186 (471)
T ss_dssp HHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTT-----------CEEEEECBCT
T ss_pred HhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeeccc-----------ceeecccccc
Confidence 445554555566787766553 2 2222 122 2345555555544433333321 3666666654
Q ss_pred CCCccCCC---CCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCccee
Q 013521 202 ENNFFPDL---STTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVA 278 (441)
Q Consensus 202 ~~~~~~~~---~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~ 278 (441)
.+....+. ....++.++++.+|++.-+.. ++.+++++.+++++..+++|-+.......-.+ ..... -.
T Consensus 187 ~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e---~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~--p~~~g----~d 257 (471)
T d1wyub1 187 EGEVDLEALKRELGPHVAALMLTNPNTLGLFE---RRILEISRLCKEAGVQLYYDGANLNAIMGWAR--PGDMG----FD 257 (471)
T ss_dssp TSSBCHHHHHHHCSTTEEEEEECSSCTTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCC--HHHHT----CS
T ss_pred cccccchhhhhhhhccccceeeccCCCccccc---chhhhhHHHHHhccccccccccchhhhhhccc--cCccc----cc
Confidence 33222211 113567888888987755433 24778889999999888887654432221101 11111 12
Q ss_pred EEEecCCcccC----CccceeEEEEeeccccccCCc--------------hhHHHHHHHHhhhcCCCcHHHHHHHHHhcC
Q 013521 279 IEISSFSKFAG----FTGVRLGWTVVPEELRYSNGY--------------PVIKDFNRIVCTCFNGASNIVQAGGLACLS 340 (441)
Q Consensus 279 i~i~S~SK~~~----~~G~r~G~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 340 (441)
+++...++.|| ..|.-+|++.+.+++++.--- .-.+.+++.+. +. ...+...++...+.
T Consensus 258 iv~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~a-ct--nqaL~al~A~vYls 334 (471)
T d1wyub1 258 VVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRS-FY--GNFLALVRAWAYIR 334 (471)
T ss_dssp EEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSS-TT--SCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhh-hh--hhHHHHHHHHHHHH
Confidence 44455666553 346668999999888522000 00001111111 11 12222222333333
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE--EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCC
Q 013521 341 PDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY--VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNE 417 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~--~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 417 (441)
-.+.+.++++.+...++..++.+.|+..|+++.. .+.+| +.++++ +....++.++|++. |+.- |...|....++
T Consensus 335 llG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~-~~~ff~EFvv~~~~~~~~~~i~k~L~~~-G~~~-~~~~~p~~~~~ 411 (471)
T d1wyub1 335 TLGLEGLKKAAALAVLNARYLKELLKEKGYRVPY-DGPSMHEFVAQPPEGFRALDLAKGLLEL-GFHP-PTVYFPLIVKE 411 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSS-CSSCCSCEEEBCSTTCCHHHHHHHHHHT-TCCC-CEESCSTTSTT
T ss_pred HhCchhHHHHHHHHHHHHHHHHHHHhhcCceecc-CcceeeEEeecCCCCCCHHHHHHHHHHc-CCCC-CcccCcCCCCC
Confidence 2455778999999999999999999888888743 23333 556666 34566788888865 8843 32334333567
Q ss_pred eEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 418 HIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 418 ~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+-+++ ..++++|+.+++.|+++
T Consensus 412 ~llv~vTE~~tkedID~lv~aL~~i 436 (471)
T d1wyub1 412 ALMVEPTETEAKETLEAFAEAMGAL 436 (471)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHH
Confidence 788886 34789999999999876
|
| >d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional repressor TraR, N-terminal domain species: Streptomyces sp. [TaxId: 1931]
Probab=97.19 E-value=3.7e-05 Score=56.44 Aligned_cols=31 Identities=19% Similarity=0.056 Sum_probs=27.9
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++++||.+||.+|+++|+ .++|+||||+..
T Consensus 44 ~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~ 76 (100)
T d1v4ra1 44 GVAAKTVSRALAVLKSEGLVSSRGALGTVVEKN 76 (100)
T ss_dssp SSCTTHHHHHTTTTTTSSCCEEETTTEEESCSC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEecCCEEEECCC
Confidence 3449999999999999999 999999999864
|
| >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional regulator YydK species: Bacillus subtilis [TaxId: 1423]
Probab=97.13 E-value=5.3e-05 Score=52.85 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=27.4
Q ss_pred CcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
++|+||.+||.+|+++|+ .++|+||||+..
T Consensus 34 vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~ 65 (78)
T d3bwga1 34 VSKSTITKSLELLEQKGAIFQVRGSGIFVRKH 65 (78)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CCHHHHHHHHHHHHHCCcEEEEcCcEEEEccC
Confidence 449999999999999999 999999999764
|
| >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Fatty acid responsive transcription factor FadR, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=4.8e-05 Score=52.29 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=26.7
Q ss_pred CcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
++|+||.+||+.|+++|| .++|+|+||+.
T Consensus 39 vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 69 (74)
T d1hw1a1 39 VTRTTLREVLQRLARDGWLTIQHGKPTKVNN 69 (74)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEETTEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCcEEEEeCceEEECC
Confidence 349999999999999999 99999999974
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=96.99 E-value=7.9e-05 Score=50.47 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=26.7
Q ss_pred CcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
.+|+||.+||..|+++|+ .++|+|+||+.
T Consensus 37 vSr~tvr~Al~~L~~~Gli~~~~~~G~~V~~ 67 (69)
T d2hs5a1 37 VSRNTVREAFQILIEDRLVAHELNRGVFVRV 67 (69)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CCHHHHHHHHHHHHHCCcEEEEcCCEEEecC
Confidence 449999999999999999 99999999974
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=90.20 E-value=0.67 Score=33.43 Aligned_cols=96 Identities=11% Similarity=0.166 Sum_probs=60.8
Q ss_pred CCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC
Q 013521 132 GIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST 211 (441)
Q Consensus 132 ~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~ 211 (441)
.++...|++..|+..|...+..+++.|-.|.+.+|....-.......+ .+.......+. .++
T Consensus 9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~-------------~i~~~~~~~~~---~dl-- 70 (113)
T d1pjqa1 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEG-------------MLTLVEGPFDE---TLL-- 70 (113)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTT-------------SCEEEESSCCG---GGG--
T ss_pred EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcC-------------CceeeccCCCH---HHh--
Confidence 456779999999999999888888888888887776654332222222 33333322211 112
Q ss_pred CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEE-EEcc
Q 013521 212 TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSII-VYDS 254 (441)
Q Consensus 212 ~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~i-i~De 254 (441)
.+..+++.+..+. +.-++|.+.|++.+++| ++|+
T Consensus 71 -~~~~lv~~at~d~--------~~n~~i~~~a~~~~ilVNv~D~ 105 (113)
T d1pjqa1 71 -DSCWLAIAATDDD--------TVNQRVSDAAESRRIFCNVVDA 105 (113)
T ss_dssp -TTCSEEEECCSCH--------HHHHHHHHHHHHTTCEEEETTC
T ss_pred -CCCcEEeecCCCH--------HHHHHHHHHHHHcCCEEEeCCC
Confidence 3456666543222 33568999999999987 5665
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.52 E-value=0.082 Score=34.13 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=24.2
Q ss_pred CcccchhhhHHhhhhCCC---CCcccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW---PVPRHCTEVS 41 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~---~~~~~g~~v~ 41 (441)
+++.||.+..+.|+++|+ +++|.||.+.
T Consensus 31 vS~~ti~r~i~~L~~~G~~I~~~~g~GY~L~ 61 (63)
T d1biaa1 31 MSRAAINKHIQTLRDWGVDVFTVPGKGYSLP 61 (63)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEETTTEEECS
T ss_pred cCHHHHHHHHHHHHHCCCcEEEeCCCeEEeC
Confidence 449999999999999999 7788898753
|