Citrus Sinensis ID: 013576

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
MLYITLLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESGQAKAVSSPRAVHNQSSVDSPKRRIGLFGLAWRDRNKGKPSNLEESSDRKSTN
cHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHccccccccHHHHHHccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccc
ccEEccHHHHHHHHHHHHHHHccccccccEEEEEHcHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
MLYITLLLDTVRTFVGIIddyfdgyyTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVtwisgpwfLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYgpalvttkdAGDAITLLQSlagstfdssQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERskggrvwkdpnglatklysfkhdpellieenkgtegsddaladgdlsykepaanlDEMLsglsvnselegrdLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESgqakavsspravhnqssvdspkrriglfglawrdrnkgkpsnleessdrkstn
MLYITLLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQElrekhrpavllvveerskggrvwkdpnglATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESGQAkavsspravhnqssvdspkrriglfglawrdrnkgkpsnleessdrkstn
MLYITLLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIeqleqevaelqqslADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESGQAKAVSSPRAVHNQSSVDSPKRRIGLFGLAWRDRNKGKPSNLEESSDRKSTN
*LYITLLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHD**L*********************************************DLQEQVVWLKVELCSLLEDKRSAVLR********************************************************************************************************************************************IGLFGLAW*********************
MLYITLLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHR*************************************************************************************QVVWLKVELC*************************************************************************************************************************************************************************************
MLYITLLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQ***************AQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQY*********************SPKRRIGLFGLAWRDRN*****************
MLYITLLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHDPELLI****GTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESG*************************L**************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLYITLLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxESAMIQVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAVMAESMLEATLQYESGQAKAVSSPRAVHNQSSVDSPKRRIGLFGLAWRDRNKGKPSNLEESSDRKSTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query440 2.2.26 [Sep-21-2011]
C8VDQ4 1120 Putative GTPase-activatin yes no 0.359 0.141 0.333 4e-18
A6QP29925 TBC1 domain family member yes no 0.343 0.163 0.320 6e-16
Q8C9V1444 Carabin OS=Mus musculus G yes no 0.322 0.319 0.36 1e-15
B5DFA1924 TBC1 domain family member no no 0.340 0.162 0.322 2e-15
Q9Z1A91134 TBC1 domain family member no no 0.252 0.097 0.380 2e-15
B1AVH7922 TBC1 domain family member no no 0.340 0.162 0.315 4e-15
O95759 1140 TBC1 domain family member yes no 0.252 0.097 0.362 1e-14
Q8IV04446 Carabin OS=Homo sapiens G no no 0.261 0.257 0.394 2e-14
Q3UYK3 1264 TBC1 domain family member no no 0.252 0.087 0.389 2e-14
Q6ZT07 1266 TBC1 domain family member no no 0.252 0.087 0.389 2e-14
>sp|C8VDQ4|GYP2_EMENI Putative GTPase-activating protein AN11010 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN11010 PE=4 SV=1 Back     alignment and function desciption
 Score = 93.2 bits (230), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 19/177 (10%)

Query: 17  IIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVN 76
           + D    GYY+  M    +DQ VFE L+ +  P L  HL+   VQ++ +S PWFLS+++N
Sbjct: 402 LCDRLVPGYYSTTMYGTLLDQKVFESLVEKTMPILWDHLNKSDVQLSVVSLPWFLSLYIN 461

Query: 77  ILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFD 136
            +P     RV DV   EG +V LF+  LA++ + G  L+  +D G  I++L+S   S  D
Sbjct: 462 SMPLVFAFRVLDVFFLEGPKV-LFQVGLAILRINGEELLDVQDDGSFISVLKSYF-SRLD 519

Query: 137 SS-----------------QLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSK 176
            S                 +L+  A   +  +T   + E REKH+ AVL  +E  +K
Sbjct: 520 ESAHPRSENPKLRAITRFQELMVVAFKEFSQITHQTITEQREKHKDAVLENIESFAK 576

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)
>sp|A6QP29|TBD2A_BOVIN TBC1 domain family member 2A OS=Bos taurus GN=TBC1D2 PE=2 SV=1 Back     alignment and function description
>sp|Q8C9V1|TB10C_MOUSE Carabin OS=Mus musculus GN=Tbc1d10c PE=2 SV=1 Back     alignment and function description
>sp|B5DFA1|TBD2A_RAT TBC1 domain family member 2A OS=Rattus norvegicus GN=Tbc1d2 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z1A9|TBCD8_MOUSE TBC1 domain family member 8 OS=Mus musculus GN=Tbc1d8 PE=2 SV=2 Back     alignment and function description
>sp|B1AVH7|TBD2A_MOUSE TBC1 domain family member 2A OS=Mus musculus GN=Tbc1d2 PE=2 SV=1 Back     alignment and function description
>sp|O95759|TBCD8_HUMAN TBC1 domain family member 8 OS=Homo sapiens GN=TBC1D8 PE=1 SV=3 Back     alignment and function description
>sp|Q8IV04|TB10C_HUMAN Carabin OS=Homo sapiens GN=TBC1D10C PE=1 SV=1 Back     alignment and function description
>sp|Q3UYK3|TBCD9_MOUSE TBC1 domain family member 9 OS=Mus musculus GN=Tbc1d9 PE=2 SV=2 Back     alignment and function description
>sp|Q6ZT07|TBCD9_HUMAN TBC1 domain family member 9 OS=Homo sapiens GN=TBC1D9 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
255568456 894 run and tbc1 domain containing 3, plant, 0.927 0.456 0.788 0.0
224068612 831 predicted protein [Populus trichocarpa] 0.920 0.487 0.786 0.0
225439783 796 PREDICTED: uncharacterized protein LOC10 0.963 0.532 0.762 0.0
356536911 825 PREDICTED: uncharacterized protein LOC10 0.954 0.509 0.744 1e-180
225448751 830 PREDICTED: uncharacterized protein LOC10 0.968 0.513 0.716 1e-178
255568157 845 run and tbc1 domain containing 3, plant, 0.952 0.495 0.715 1e-177
449509015 836 PREDICTED: LOW QUALITY PROTEIN: ecotropi 0.959 0.504 0.689 1e-176
449451701 836 PREDICTED: ecotropic viral integration s 0.959 0.504 0.689 1e-176
297741503 735 unnamed protein product [Vitis vinifera] 0.911 0.545 0.736 1e-175
449519166 775 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.925 0.525 0.745 1e-174
>gi|255568456|ref|XP_002525202.1| run and tbc1 domain containing 3, plant, putative [Ricinus communis] gi|223535499|gb|EEF37168.1| run and tbc1 domain containing 3, plant, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/420 (78%), Positives = 370/420 (88%), Gaps = 12/420 (2%)

Query: 13  TFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLS 72
           T VGIIDDYFDGYYTEEMIE+QVDQLVFEEL+RERFPKLV+HLDYLGVQV WISGPWFLS
Sbjct: 455 TLVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLVNHLDYLGVQVAWISGPWFLS 514

Query: 73  IFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAG 132
           IFVN++PWESVLR+WDVLL+EGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAG
Sbjct: 515 IFVNMIPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAG 574

Query: 133 STFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLY 192
           STFDSSQLVFTACMG+L V EARLQELREKHRPAVLLVVEERSK GRVWKD  GLA+KLY
Sbjct: 575 STFDSSQLVFTACMGFLAVNEARLQELREKHRPAVLLVVEERSKRGRVWKDSKGLASKLY 634

Query: 193 SFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEG-RDLQEQV 251
           SFKHDP  L EE K  E        GD   + P++NLD +L GL+V++E++   DLQEQV
Sbjct: 635 SFKHDPGSLTEEEKTCE--------GDSKSEHPSSNLDALLGGLTVDTEVDSLPDLQEQV 686

Query: 252 VWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 311
           VW KVELC LLE+KRSA+LRAEELETA MEMVK+DNRRQLSA+IEQLEQEVA+LQQ+L+D
Sbjct: 687 VWFKVELCRLLEEKRSAILRAEELETAFMEMVKEDNRRQLSAKIEQLEQEVADLQQALSD 746

Query: 312 KREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKR 371
           KREQE+AM+QVLM+VEQEQRITE+AR  AE+DA AQRYA+ VL++KYEKAMASV QME+R
Sbjct: 747 KREQEAAMLQVLMRVEQEQRITEEARVRAERDAAAQRYALTVLQQKYEKAMASVTQMEQR 806

Query: 372 AVMAESMLEATLQYESGQAKAVSSPRAVHNQSSV-DSPKRRIGL--FGLAWRDRNKGKPS 428
            VMAESMLEATLQYESGQ+KA SSPR  H +SS  +SP RR+ L  FGL WRDRNKGKP+
Sbjct: 807 VVMAESMLEATLQYESGQSKAQSSPRLAHCRSSTSESPGRRMSLLKFGLGWRDRNKGKPN 866

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224068612|ref|XP_002326158.1| predicted protein [Populus trichocarpa] gi|222833351|gb|EEE71828.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439783|ref|XP_002273633.1| PREDICTED: uncharacterized protein LOC100248309 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536911|ref|XP_003536976.1| PREDICTED: uncharacterized protein LOC100805928 [Glycine max] Back     alignment and taxonomy information
>gi|225448751|ref|XP_002281489.1| PREDICTED: uncharacterized protein LOC100255322 [Vitis vinifera] gi|297736455|emb|CBI25326.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255568157|ref|XP_002525054.1| run and tbc1 domain containing 3, plant, putative [Ricinus communis] gi|223535635|gb|EEF37301.1| run and tbc1 domain containing 3, plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449509015|ref|XP_004163470.1| PREDICTED: LOW QUALITY PROTEIN: ecotropic viral integration site 5 protein homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449451701|ref|XP_004143600.1| PREDICTED: ecotropic viral integration site 5 protein homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|297741503|emb|CBI32635.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449519166|ref|XP_004166606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101227455 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
TAIR|locus:2097213777 AT3G55020 [Arabidopsis thalian 0.879 0.498 0.678 1.5e-138
TAIR|locus:2077472400 AT3G07890 [Arabidopsis thalian 0.336 0.37 0.348 3.8e-19
DICTYBASE|DDB_G0270856831 DDB_G0270856 "GRAM domain-cont 0.325 0.172 0.304 2.6e-14
ASPGD|ASPL0000063593 1120 AN11010 [Emericella nidulans ( 0.361 0.141 0.323 3.1e-14
WB|WBGene00022880908 tbc-2 [Caenorhabditis elegans 0.275 0.133 0.385 2.3e-13
UNIPROTKB|F1P2U9340 GRTP1 "Uncharacterized protein 0.318 0.411 0.322 3.4e-13
RGD|1306860924 Tbc1d2 "TBC1 domain family, me 0.338 0.161 0.331 4e-13
UNIPROTKB|F1LSU2924 Tbc1d2 "TBC1 domain family mem 0.338 0.161 0.331 4e-13
MGI|MGI:2652885922 Tbc1d2 "TBC1 domain family, me 0.338 0.161 0.324 5.1e-13
UNIPROTKB|A6QP29925 TBC1D2 "TBC1 domain family mem 0.338 0.161 0.324 5.2e-13
TAIR|locus:2097213 AT3G55020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1356 (482.4 bits), Expect = 1.5e-138, P = 1.5e-138
 Identities = 268/395 (67%), Positives = 322/395 (81%)

Query:    15 VGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIF 74
             +G+IDDYF+GYY+EEMIE+QVDQLV EEL+RERFPKLVHHLDYLGVQV W++GPWFLSIF
Sbjct:   373 IGLIDDYFNGYYSEEMIESQVDQLVLEELVRERFPKLVHHLDYLGVQVAWVTGPWFLSIF 432

Query:    75 VNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGST 134
             +N+LPWESVLRVWDVLL+EG RVMLFRTALALMELYGPALVTTKDAGDA+TLLQSL GST
Sbjct:   433 MNMLPWESVLRVWDVLLFEGTRVMLFRTALALMELYGPALVTTKDAGDAVTLLQSLTGST 492

Query:   135 FDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGRVWKDPNGLATKLYSF 194
             FDSSQLV TACMGY  V E RLQELR KHRPAV+  +EERSKG + W+D  GLA+KLY+F
Sbjct:   493 FDSSQLVLTACMGYQNVHEIRLQELRSKHRPAVIAALEERSKGLQAWRDSKGLASKLYNF 552

Query:   195 KHDPELLIEENKGTEGSDDALADGDLSYKEP-AANLDEMLSGLSVNSELEG-RDLQEQVV 252
             K DP+ ++ ++K +      L++G LS  E  ++N DE+L  L+ + E++  +DLQ QV+
Sbjct:   553 KQDPKSVLVDSKAS------LSNGSLSRSESGSSNADEVLVSLTGDGEVDSVQDLQAQVL 606

Query:   253 WLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIXXXXXXXXXXXXXXADK 312
             WLK ELC LLE+KRSA+LRAEELE ALME+VK+DNRRQLSA++              +DK
Sbjct:   607 WLKAELCKLLEEKRSALLRAEELEIALMEIVKEDNRRQLSAKVEQLEQEMAEVQRLLSDK 666

Query:   313 REQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRA 372
             +EQE AM+QVLM+VEQEQ++TEDAR  AEQDA AQRYA  VL+EKYE+A+A++A+MEKRA
Sbjct:   667 QEQEGAMLQVLMRVEQEQKVTEDARIFAEQDAEAQRYAAQVLQEKYEEAVAALAEMEKRA 726

Query:   373 VMAESMLEATLQYESGQAKAVSSPRAVHNQSSVDS 407
             VMAESMLEATLQY+SGQ KA  SPR    Q    S
Sbjct:   727 VMAESMLEATLQYQSGQLKAQPSPRTSSKQDQFAS 761
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2077472 AT3G07890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270856 DDB_G0270856 "GRAM domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000063593 AN11010 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00022880 tbc-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2U9 GRTP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1306860 Tbc1d2 "TBC1 domain family, member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LSU2 Tbc1d2 "TBC1 domain family member 2A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2652885 Tbc1d2 "TBC1 domain family, member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6QP29 TBC1D2 "TBC1 domain family member 2A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023082001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (655 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 9e-24
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 2e-21
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 1e-11
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
pfam12004489 pfam12004, DUF3498, Domain of unknown function (DU 0.001
pfam05103131 pfam05103, DivIVA, DivIVA protein 0.001
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.003
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information 
 Score = 98.2 bits (245), Expect = 9e-24
 Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 9/122 (7%)

Query: 1   MLYI--TLLL------DTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLV 52
           M +I   LLL      +    FV +++     ++       Q D  VFEEL+++  P+L 
Sbjct: 85  MNFIAAPLLLVVLDEEEAFWCFVSLLEYLLRDFFLPSFPGLQRDLYVFEELLKKHDPELY 144

Query: 53  HHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGP 112
            HL  LG+  +  +  WFL++F   LP E+VLR+WD L  EG +  LFR ALA+++ +  
Sbjct: 145 KHLQKLGLDPSLFASKWFLTLFARELPLETVLRLWD-LFLEGGKFFLFRVALAILKRFRK 203

Query: 113 AL 114
            L
Sbjct: 204 EL 205

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498) Back     alignment and domain information
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 440
KOG4347671 consensus GTPase-activating protein VRP [General f 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 99.94
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.81
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.79
COG5210496 GTPase-activating protein [General function predic 99.79
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 99.76
KOG2223586 consensus Uncharacterized conserved protein, conta 99.75
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 99.7
KOG4567370 consensus GTPase-activating protein [General funct 99.67
KOG1093725 consensus Predicted protein kinase (contains TBC a 99.58
KOG4436948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.53
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.42
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.25
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.09
KOG1091625 consensus Ypt/Rab-specific GTPase-activating prote 98.91
KOG2224781 consensus Uncharacterized conserved protein, conta 98.69
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 98.53
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 98.5
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 98.38
KOG2801559 consensus Probable Rab-GAPs [Intracellular traffic 97.93
PF149611296 BROMI: Broad-minded protein 97.38
PF0003629 EF-hand_1: EF hand; InterPro: IPR018248 Many calci 92.85
KOG0044193 consensus Ca2+ sensor (EF-Hand superfamily) [Signa 91.94
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-37  Score=328.05  Aligned_cols=275  Identities=27%  Similarity=0.426  Sum_probs=246.6

Q ss_pred             ccchHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhh
Q 013576            3 YITLLLDTVRTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWES   82 (440)
Q Consensus         3 ~a~lLEdAFWlLv~Lme~~Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~   82 (440)
                      ..+-+|+|||+++.+|+.++|+||+..+.|...|+.||+.+++.++|.||.|+..+| ...+++++||+|+|...+|++.
T Consensus       299 l~~~EEeafwll~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~  377 (671)
T KOG4347|consen  299 LFCKEEEAFWLLSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEY  377 (671)
T ss_pred             hhhccchHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHH
Confidence            445677999999999999999999999999999999999999999999999999999 6999999999999999999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHcHHHhhCCCCHHHHHHHHHcccCCCC---------------ChHHHHHHHhhc
Q 013576           83 VLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTF---------------DSSQLVFTACMG  147 (440)
Q Consensus        83 vlRIWD~fL~EG~kv~LfrVALAILk~~~d~LL~~kD~~eil~lLq~l~~~~~---------------D~deLI~~A~~~  147 (440)
                      .+||.||||++|.++ +|.|||||++.+.+.|++++|.++++.+|+++.++..               .+.+||.+||..
T Consensus       378 a~~ilD~FF~eG~rv-lFqiaLail~~N~~~il~~~dDge~~~vl~~y~~~i~~~~~~~~~~~~~~~~~i~~Ll~~ay~k  456 (671)
T KOG4347|consen  378 AVRILDCFFYEGPRV-LFQIALAILKQNAERILSATDDGEAMMVLGNYFDSIYNGDYPDESDHASDSIEIQDLLATAYEK  456 (671)
T ss_pred             HHHHHhhhhhcccHH-HHHHHHHHHHhhHHHhcccCCchHHHHHHHHHHHhccCCCCCccccchhhhhHHHHHHHHHHHH
Confidence            999999999999998 9999999999999999999999999999988665432               256899999999


Q ss_pred             ccCCCHHHHHHHHHHhhHHHHHHHHHHHhcCCcc------cCCcchHhhhhhhccChhhhhhhccCCCCCCCCCCCCCcC
Q 013576          148 YLTVTEARLQELREKHRPAVLLVVEERSKGGRVW------KDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLS  221 (440)
Q Consensus       148 ~~~Is~~~Ie~LR~k~r~~V~q~~eer~kk~~~~------k~~~~l~~~Ly~~~~d~~~l~~~~~~~e~~~~~~~~~e~~  221 (440)
                      |+.||.+.|+.+|.|||..|++++|.+.|+....      .-.+..++.||+.|++..+.  .....-+++|+.+..+.+
T Consensus       457 Fg~it~e~ie~~R~K~r~~v~q~le~~~krt~lrs~~~~~~lt~~dL~~lYd~f~~e~~~--~~~~~~~~~p~~~~~eqy  534 (671)
T KOG4347|consen  457 FGDITDELIEHLRKKHRLGVLQSLEDFTKRTILRSVVQTTSLTNTDLENLYDLFKEEHLT--NSIGLGRSDPDFEAFEQY  534 (671)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcccCccCHHHHHHHHHHHHHHHhc--cCcccCCCCCCchHHHHH
Confidence            9999999999999999999999999998875332      24566788999988888333  222223777888888999


Q ss_pred             ccCccCChhHhhccCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhcHHHHHHHHHHHhhhhHHHHHH
Q 013576          222 YKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLS  292 (440)
Q Consensus       222 r~d~~~~f~~~~~~L~~~~~~~~~~~~~~~~~l~~~l~rLld~~~~~~l~~~el~~~l~em~k~d~~~~L~  292 (440)
                       +|.. +|..+|..|.||.  .+       ..+..++||++|.+.+|+|+|++|+++|++++.+|+.++|+
T Consensus       535 -i~~~-~f~~~f~~l~pw~--~s-------~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~  594 (671)
T KOG4347|consen  535 -IDYA-QFLEVFRELLPWA--VS-------LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLK  594 (671)
T ss_pred             -HHHh-hHHHHhhccCchh--HH-------HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHH
Confidence             9997 9999999999999  22       34889999999999999999999999999999999998886

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand Back     alignment and domain information
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 5e-06
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 2e-04
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 2e-04
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 9e-04
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure 
Iteration: 1

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 26  YTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLR 85
           Y  +MI  Q+       L+ +    L +HL+   +  +  + PWFL++F +  P   V R
Sbjct: 185 YRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVAR 244
Query: 86  VWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQS 129
           V+D++  +G  V +F+ AL+L+  + P ++  ++    +  ++S
Sbjct: 245 VFDMIFLQGTEV-IFKVALSLLGSHKPLILQHENLETIVDFIKS 287
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 3e-39
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 2e-36
2qq8_A334 TBC1 domain family member 14; structural genomics 9e-36
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 7e-28
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 8e-26
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 2e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 4e-05
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
 Score =  142 bits (360), Expect = 3e-39
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 7/168 (4%)

Query: 13  TFVGIIDDY-FDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFL 71
             V I+ DY     Y     +        E L++E+ P L  H   L ++    +  WFL
Sbjct: 137 VLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFL 196

Query: 72  SIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLA 131
           ++F    P   V  + D+LL EG  + +F  ALAL++     L+     G        L 
Sbjct: 197 TLFTAKFPLCMVFHIIDLLLCEGLNI-IFHVALALLKTSKEDLLQADFEGALKFFRVQLP 255

Query: 132 GSTF---DSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSK 176
                  ++ +L+  AC   + V   +L++  ++++      +++   
Sbjct: 256 KRYRAEENARRLMEQACN--IKVPTKKLKKYEKEYQTMRESQLQQEDP 301
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 99.94
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 99.94
2qq8_A334 TBC1 domain family member 14; structural genomics 99.93
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 99.91
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 99.91
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 99.91
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 99.89
1eg3_A261 Dystrophin; EF-hand like domain, WW domain, struct 91.13
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
Probab=99.94  E-value=5e-27  Score=232.62  Aligned_cols=162  Identities=23%  Similarity=0.397  Sum_probs=147.4

Q ss_pred             cchHHHHHHHHHHHHHhh-hhccCCCChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhh
Q 013576            4 ITLLLDTVRTFVGIIDDY-FDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWES   82 (440)
Q Consensus         4 a~lLEdAFWlLv~Lme~~-Lp~yy~~~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~   82 (440)
                      .+.+++|||||+++|+++ ++++|.++++|++..+.+|+.+++.++|+||+||.+.|+++.+|+.+||+|+|++.+|++.
T Consensus       128 ~~~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~  207 (310)
T 3hzj_A          128 HMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCM  207 (310)
T ss_dssp             HSCHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHH
T ss_pred             hCCHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHH
Confidence            345679999999999987 7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHcHHHhhCCCCHHHHHHHHHc-ccCC---CCChHHHHHHHhhcccCCCHHHHHH
Q 013576           83 VLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQS-LAGS---TFDSSQLVFTACMGYLTVTEARLQE  158 (440)
Q Consensus        83 vlRIWD~fL~EG~kv~LfrVALAILk~~~d~LL~~kD~~eil~lLq~-l~~~---~~D~deLI~~A~~~~~~Is~~~Ie~  158 (440)
                      ++||||+||++|.++ ++++|+||+..+++.|+++ |+++++.+|++ +|..   ..|++.|+..|+..  +++++.|.+
T Consensus       208 ~~riwD~~l~~g~~~-l~~v~lail~~~~~~Ll~~-d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l--~~~~~~l~~  283 (310)
T 3hzj_A          208 VFHIIDLLLCEGLNI-IFHVALALLKTSKEDLLQA-DFEGALKFFRVQLPKRYRAEENARRLMEQACNI--KVPTKKLKK  283 (310)
T ss_dssp             HHHHHHHHHHHCTTH-HHHHHHHHHHHTHHHHHTC-CHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS--CCCHHHHHH
T ss_pred             HHHHHHHHHHCCcHH-HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHhCcccccccccHHHHHHHHHhc--CCCHHHHHH
Confidence            999999999999998 9999999999999999997 99999999974 5543   24789999999863  699999999


Q ss_pred             HHHHhhHHHHH
Q 013576          159 LREKHRPAVLL  169 (440)
Q Consensus       159 LR~k~r~~V~q  169 (440)
                      ++++|.....+
T Consensus       284 ~~~ey~~~~~~  294 (310)
T 3hzj_A          284 YEKEYQTMRES  294 (310)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHH
Confidence            99999874433
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 440
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 3e-14
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (167), Expect = 3e-14
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 3/144 (2%)

Query: 34  QVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYE 93
                   +L++     L +H     V+    +  W   + +      +V+R+WD  L E
Sbjct: 6   LRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSE 65

Query: 94  GNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTE 153
            ++ +    +++  ++  P   T      A  +  +    +  ++    T         +
Sbjct: 66  TSQEVTSSYSMSSNDIKPPVTPTEPR--VASFVTPTKDFQSPTTALSNMTPNNAVEDSGK 123

Query: 154 ARLQELREKH-RPAVLLVVEERSK 176
            R   L E H       +++   +
Sbjct: 124 MRQSSLNEFHVFVCAAFLIKWSDQ 147

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.76
d1tuza_118 Diacylglycerol kinase alpha, N-terminal domain {Hu 96.31
d1g8ia_187 Frequenin (neuronal calcium sensor 1) {Human (Homo 87.16
d1omra_201 Recoverin {Cow (Bos taurus) [TaxId: 9913]} 86.74
d1ksoa_93 Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta 84.43
d1f54a_77 Calmodulin {Baker's yeast (Saccharomyces cerevisia 83.57
d1fpwa_190 Frequenin (neuronal calcium sensor 1) {Baker's yea 83.46
d1ctda_34 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 82.68
d1yuta198 Calcyclin (S100) {Human (Homo sapiens), s100a13 [T 82.32
d1s6ca_178 Kchip1, Kv4 potassium channel-interacting protein 82.09
d1e8aa_87 Calcyclin (S100) {Human (Homo sapiens), calgranuli 81.16
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.5e-18  Score=158.77  Aligned_cols=117  Identities=18%  Similarity=0.259  Sum_probs=104.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCchhhhHhHHHHHhcccCChhhHHHHHHHHHhcCCch-----------
Q 013576           29 EMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRV-----------   97 (440)
Q Consensus        29 ~~~gl~~d~~vfe~LLk~~lP~L~~HL~~lgI~~~~f~~~WFLtLFs~~LPle~vlRIWD~fL~EG~kv-----------   97 (440)
                      |.||++..+.+|+.+++.++|+||+||.+.|+++.+|+++||+|+|++.+|++.++||||+||++|...           
T Consensus         1 gqpGi~~~~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~~~~~~~~~~~l~~   80 (188)
T d1fkma2           1 GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSND   80 (188)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-------------
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhccCCHHHHHHHHHHHHhCCchhhhhhhhhhhhh
Confidence            569999999999999999999999999999999999999999999999999999999999999987531           


Q ss_pred             ---------------------------------------------------HHHHHHHHHHHHcHHHhhCCCCHHHHHHH
Q 013576           98 ---------------------------------------------------MLFRTALALMELYGPALVTTKDAGDAITL  126 (440)
Q Consensus        98 ---------------------------------------------------~LfrVALAILk~~~d~LL~~kD~~eil~l  126 (440)
                                                                         +..++++|++...++.|++ .|+++++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~A~L~~~r~~Ll~-~df~~~l~~  159 (188)
T d1fkma2          81 IKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLME-MDFQETITF  159 (188)
T ss_dssp             -----------------------------------------------CHHHHHHHHHHHHHHHTHHHHTT-CCHHHHHHH
T ss_pred             hccccccccccchhhhhhccccccccccccccchhhhhhcccccccccchHHHHHHHHHHHHHHHHHHHH-ccHHHHHHH
Confidence                                                               2457899999999999997 599999999


Q ss_pred             HHcccCCCC---ChHHHHHHHhh
Q 013576          127 LQSLAGSTF---DSSQLVFTACM  146 (440)
Q Consensus       127 Lq~l~~~~~---D~deLI~~A~~  146 (440)
                      |+++|...+   |++.++..|+.
T Consensus       160 Lq~~P~~~~~~~di~~ll~~A~~  182 (188)
T d1fkma2         160 LQNPPTKDWTETDIEMLLSEAFI  182 (188)
T ss_dssp             HTSCSCTTCCHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCCcccHHHHHHHHHH
Confidence            999986543   67778888853
>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]} Back     information, alignment and structure
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]} Back     information, alignment and structure
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]} Back     information, alignment and structure