Citrus Sinensis ID: 013609
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 439 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FKV1 | 432 | Probable anion transporte | yes | no | 0.974 | 0.990 | 0.798 | 0.0 | |
| Q2QWW7 | 439 | Probable anion transporte | yes | no | 0.984 | 0.984 | 0.703 | 0.0 | |
| Q53P54 | 428 | Probable anion transporte | no | no | 0.972 | 0.997 | 0.726 | 0.0 | |
| O82390 | 512 | Sodium-dependent phosphat | no | no | 0.936 | 0.802 | 0.367 | 5e-74 | |
| Q652N5 | 591 | Probable anion transporte | no | no | 0.940 | 0.698 | 0.367 | 8e-74 | |
| Q8GX78 | 541 | Probable anion transporte | no | no | 0.938 | 0.761 | 0.359 | 9e-74 | |
| Q9SDI4 | 529 | Probable anion transporte | no | no | 0.936 | 0.776 | 0.362 | 7e-70 | |
| Q05B21 | 576 | Vesicular glutamate trans | yes | no | 0.954 | 0.727 | 0.313 | 7e-57 | |
| Q6INC8 | 576 | Vesicular glutamate trans | N/A | no | 0.952 | 0.725 | 0.311 | 1e-56 | |
| Q9JI12 | 582 | Vesicular glutamate trans | yes | no | 0.954 | 0.719 | 0.306 | 1e-55 |
| >sp|Q9FKV1|ANTR5_ARATH Probable anion transporter 5 OS=Arabidopsis thaliana GN=ANTR5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/437 (79%), Positives = 385/437 (88%), Gaps = 9/437 (2%)
Query: 3 NFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQV 62
N P+RY+IV LTF+STCVCYIERVGFSIAYT AADAAG+NQSSKGTILSTF+ GYACSQV
Sbjct: 5 NIPQRYVIVFLTFLSTCVCYIERVGFSIAYTVAADAAGINQSSKGTILSTFFVGYACSQV 64
Query: 63 PGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTV 122
PGGWAAQKIGGRKVLL SFVLWSSTCF + LDPN V +LVVARLLVGV+QGFIFPSIHTV
Sbjct: 65 PGGWAAQKIGGRKVLLLSFVLWSSTCFLVPLDPNRVGLLVVARLLVGVAQGFIFPSIHTV 124
Query: 123 LAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182
LAQWVPPHERSR VS+TTSGMYLGAA+GM LP+LV+ GP SVF AEA G +WSLLW
Sbjct: 125 LAQWVPPHERSRLVSITTSGMYLGAALGMWLLPALVELRGPESVFLAEALAGVIWSLLWI 184
Query: 183 KYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242
+YATDPPRSEHPKA+AAGFG +LLP KV + IPWK+I+++LPVWAIV
Sbjct: 185 RYATDPPRSEHPKAAAAGFGGALLPTNVNHHKVTH---------IPWKKIMLSLPVWAIV 235
Query: 243 VNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITK 302
VNNFTFHYALYVLMNWLPTYFELGLQ+SLQ M SSKM+PYLNMF+FS +GG +AD+LITK
Sbjct: 236 VNNFTFHYALYVLMNWLPTYFELGLQISLQGMDSSKMVPYLNMFVFSIVGGFIADYLITK 295
Query: 303 RILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD 362
RILSVTRTRKFLNTVGF++AS ALM LP+FR+ NG I CSS+ALGFLALGRAGFAVNHMD
Sbjct: 296 RILSVTRTRKFLNTVGFLIASAALMVLPMFRTENGVILCSSVALGFLALGRAGFAVNHMD 355
Query: 363 IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCI 422
IAPRYAGIVMG+SNTAGTLAGI+GVD+TGKLLEA+K YSDLS PESWR VFFIPGLLCI
Sbjct: 356 IAPRYAGIVMGVSNTAGTLAGIIGVDLTGKLLEASKLVYSDLSHPESWRVVFFIPGLLCI 415
Query: 423 LSSFVFLLFSTGERIFD 439
SS VFLLFSTGERIFD
Sbjct: 416 FSSVVFLLFSTGERIFD 432
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Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/439 (70%), Positives = 367/439 (83%), Gaps = 7/439 (1%)
Query: 2 MNFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQ 61
M FPKRY+IV+LTFI T VCYIERVGFSIAYT AADA GVNQ++KG ILS FYYGY SQ
Sbjct: 7 MKFPKRYVIVLLTFICTNVCYIERVGFSIAYTVAADAIGVNQANKGMILSMFYYGYVLSQ 66
Query: 62 VPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHT 121
+PGGWAAQ+IGGR+VLL SFVLWS C + LDP ILV++RL VGV+QGFIFP+IHT
Sbjct: 67 IPGGWAAQRIGGRRVLLLSFVLWSLICGLIPLDPKREVILVLSRLFVGVAQGFIFPAIHT 126
Query: 122 VLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLW 181
VLAQWVPP ERSRSVSLTTSGMYLGAA GMLF PSLVK+ G SVF EA LG WS++W
Sbjct: 127 VLAQWVPPQERSRSVSLTTSGMYLGAAGGMLFFPSLVKHMGAQSVFFVEAVLGVAWSVIW 186
Query: 182 FKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGS-AMKAAKIPWKRIVVNLPVWA 240
K++++PPR++ PK S +K+K GG A + KIPW+RI+ +LPVWA
Sbjct: 187 LKFSSEPPRTDLPKVSMPKVAS------REKIKAQAGGVVAPRTVKIPWRRIIFSLPVWA 240
Query: 241 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300
IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQ+MGSSKM+PY NMFIFSNIGGVVADHLI
Sbjct: 241 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLI 300
Query: 301 TKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNH 360
T+RILS+T+TRK LNT+GF+V+++ALMALP+FR+ +G + CSSI+LGFLALGRAGFAVNH
Sbjct: 301 TRRILSITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSISLGFLALGRAGFAVNH 360
Query: 361 MDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLL 420
MD+AP++AGIVMG+SNTAGTLAGIVGV +TG +LE AK + DL++ E+W+ VFF+PG L
Sbjct: 361 MDVAPKFAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGYL 420
Query: 421 CILSSFVFLLFSTGERIFD 439
CI SS +FL+FSTGE+IF+
Sbjct: 421 CIFSSIIFLIFSTGEKIFE 439
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Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q53P54|PHT46_ORYSJ Probable anion transporter 6 OS=Oryza sativa subsp. japonica GN=PHT4;6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/439 (72%), Positives = 373/439 (84%), Gaps = 12/439 (2%)
Query: 2 MNFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQ 61
M FPKRY IV+LTF+ T VCYIERVGFSIAYT AADA G NQ++KG ILS FYYGY SQ
Sbjct: 1 MKFPKRYAIVLLTFMCTNVCYIERVGFSIAYTVAADAVGTNQANKGMILSMFYYGYVLSQ 60
Query: 62 VPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHT 121
+PGGWAAQ++GGR VLL SFVLWSS C + LDPN V +LV++RLLVGV+QG IFPSIHT
Sbjct: 61 IPGGWAAQRLGGRLVLLLSFVLWSSICAVVPLDPNRVILLVLSRLLVGVAQGLIFPSIHT 120
Query: 122 VLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLW 181
VLAQWVPP ERSRSVSLTTSGMYLGAA GML LPSLVK GP SVF+ EA LG W L+W
Sbjct: 121 VLAQWVPPQERSRSVSLTTSGMYLGAACGMLLLPSLVKNMGPQSVFSVEAMLGVAWLLIW 180
Query: 182 FKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGG-SAMKAAKIPWKRIVVNLPVWA 240
FK+A+DPPR++ PK ++ K+KV GG A + KIPW RI+ +LP+WA
Sbjct: 181 FKFASDPPRTDLPKVAS-----------KDKMKVQTGGIMAPRTVKIPWARILFSLPIWA 229
Query: 241 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300
IVVNNFTFHYALYVLMNWLPTYF+LGLQLSLQ+MG SKM+PYLNMF+FSNIGGV+ADHLI
Sbjct: 230 IVVNNFTFHYALYVLMNWLPTYFKLGLQLSLQDMGFSKMLPYLNMFLFSNIGGVLADHLI 289
Query: 301 TKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNH 360
T++ILSVT+TRK LNTVGF+V++IALMALP+FR+ +GAIFCSS++LGFLALGRAGFAVNH
Sbjct: 290 TRKILSVTKTRKLLNTVGFVVSAIALMALPLFRTPSGAIFCSSVSLGFLALGRAGFAVNH 349
Query: 361 MDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLL 420
MD+AP++AGIVMGISNTAGTLAGIVGV +TG++LEAAK + DL+S ESWR VFF+PG L
Sbjct: 350 MDVAPKFAGIVMGISNTAGTLAGIVGVGLTGRILEAAKASNMDLTSSESWRTVFFVPGYL 409
Query: 421 CILSSFVFLLFSTGERIFD 439
CI SSF+FL+FSTGE+IF+
Sbjct: 410 CIFSSFIFLIFSTGEKIFE 428
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Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 162/441 (36%), Positives = 248/441 (56%), Gaps = 30/441 (6%)
Query: 3 NFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQV 62
FPKR++IV+L F + +C ++RV SIA + G N ++ G I S+F++GY +Q+
Sbjct: 98 EFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQI 157
Query: 63 PGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFI----LVVARLLVGVSQGFIFPS 118
GG A +GG++VL F + WS L P + L+V R +GV +G P+
Sbjct: 158 AGGIWADTVGGKRVLGFGVIWWSIATI---LTPVAAKLGLPYLLVVRAFMGVGEGVAMPA 214
Query: 119 IHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWS 178
++ +L++WVP ERSRS++L SGMYLG+ G+ F P L+ G SVF + +LG +W
Sbjct: 215 MNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWL 274
Query: 179 LLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPV 238
LW A P E P +LLP ++K+ DN S IPW+ I+ PV
Sbjct: 275 TLWLTKAESSPL-EDP---------TLLP-EERKLIADNCASKEPVKSIPWRLILSKPPV 323
Query: 239 WAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH 298
WA++ +F ++ ++L+ W+PTY+ L+ +L E G + P++ M I +N GG +AD
Sbjct: 324 WALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIADT 383
Query: 299 LITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAV 358
L++ R SVT RK + T+GF+ + L L S A+ C + + G A ++G
Sbjct: 384 LVS-RGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYS 442
Query: 359 NHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPG 418
NH DIAPRY+G+++G+SNTAG LAG++G TG +L+ SW VF I
Sbjct: 443 NHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQHG-----------SWDDVFTISV 491
Query: 419 LLCILSSFVFLLFSTGERIFD 439
L ++ + ++ LFSTGE+I D
Sbjct: 492 GLYLVGTVIWNLFSTGEKIID 512
|
Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 162/441 (36%), Positives = 253/441 (57%), Gaps = 28/441 (6%)
Query: 2 MNFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQ 61
FPKR+ +V+L F S +C ++RV SIA + G + ++ G I S+F++GY +Q
Sbjct: 176 QQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQSSFFWGYLLTQ 235
Query: 62 VPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPN-NVFILVVARLLVGVSQGFIFPSIH 120
+ GG A + GG+ VL F V WS L + L+V R +G+ +G P+++
Sbjct: 236 ILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGEGVAMPAMN 295
Query: 121 TVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLL 180
+L++WVP ERSRS++L SGMYLG+ G+ F P L+ G SVF A +LG +W L
Sbjct: 296 NILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGSLGSVWFAL 355
Query: 181 WFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKA--AKIPWKRIVVNLPV 238
W + A P SE P+ S A + + GGS +K IPWK I+ PV
Sbjct: 356 WQRKAHSSP-SEDPELSKA------------EKRYILGGSTLKEPVTSIPWKLILSKPPV 402
Query: 239 WAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH 298
WA++V++F ++ ++L+ W+PTY+ L+ +L E G ++P+L M IF+NIGG +AD
Sbjct: 403 WALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADT 462
Query: 299 LITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAV 358
L+ R +S+T RK + ++GF+ ++ L L R+ A+ C + + G A ++G
Sbjct: 463 LV-GRGVSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQSGLYS 521
Query: 359 NHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPG 418
NH DI PRYAG+++G+SNTAG LAG+ G TG +L+ SW +VF +
Sbjct: 522 NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQKG-----------SWDSVFQVAV 570
Query: 419 LLCILSSFVFLLFSTGERIFD 439
+L I+ + V+ +FSTGE++ +
Sbjct: 571 VLYIVGTVVWNVFSTGEKVLE 591
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 277 bits (709), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 158/440 (35%), Positives = 253/440 (57%), Gaps = 28/440 (6%)
Query: 3 NFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQV 62
FP+R++IV+L F S +C ++RV SIA + + ++ G I S+F++GY +Q+
Sbjct: 127 QFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQI 186
Query: 63 PGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPN-NVFILVVARLLVGVSQGFIFPSIHT 121
GG A K GG+ VL F V WS + + L+V R +G+ +G P+++
Sbjct: 187 LGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNN 246
Query: 122 VLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLW 181
+L++W+P ERSRS++L SGMYLG+ G+ F P L+ G SVF + +LG +W LLW
Sbjct: 247 MLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLW 306
Query: 182 FKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKA--AKIPWKRIVVNLPVW 239
K+A P+ + P S +++ KV GGS + IPWK I+ PVW
Sbjct: 307 LKFAYSSPKDD-PDLS------------EEEKKVILGGSKPREPVTVIPWKLILSKPPVW 353
Query: 240 AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHL 299
A+++++F ++ ++L+ W+PTY+ L+ +L E G ++P+L M +F+NIGG +AD L
Sbjct: 354 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTL 413
Query: 300 ITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVN 359
++ R LS+T RK + ++GF+ + L L ++ A+ C + + G A ++G N
Sbjct: 414 VS-RGLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSN 472
Query: 360 HMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGL 419
H DI PRYAG+++G+SNTAG LAG+ G TG +L+ SW VF +
Sbjct: 473 HQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-----------SWDDVFKVAVA 521
Query: 420 LCILSSFVFLLFSTGERIFD 439
L ++ + V+ LF+TGE+I D
Sbjct: 522 LYLIGTLVWNLFATGEKILD 541
|
Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 160/441 (36%), Positives = 242/441 (54%), Gaps = 30/441 (6%)
Query: 3 NFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQV 62
FPKR+ IV L F + +C ++RV SIA + G N + G I S+F++GY +Q+
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174
Query: 63 PGGWAAQKIGGRKVLLFSFVLWSS----TCFWLKLDPNNVFILVVARLLVGVSQGFIFPS 118
GG A +GG+ VL F + WS T F KL + L+V R +GV +G P+
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKL---GLPFLLVTRAFMGVGEGVAMPA 231
Query: 119 IHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWS 178
++ +L++WVP ERSRS++L SGMYLG+ G+ F P L+ G SVF + +LG W
Sbjct: 232 MNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWF 291
Query: 179 LLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPV 238
W A P E P SA ++K+ +IPW I+ PV
Sbjct: 292 STWASKAYSSPL-EDPGISA----------EEKKLITSQTTGGEPVKEIPWGLILSKPPV 340
Query: 239 WAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH 298
WA++V++F ++ ++L+ W+PTY+ L+ +L E G ++P+L M + +N GG +AD
Sbjct: 341 WALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADT 400
Query: 299 LITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAV 358
L++ R LSVT RK + ++GF+ + L L S A+ C + + G A ++G
Sbjct: 401 LVS-RGLSVTTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYS 459
Query: 359 NHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPG 418
NH DI PRYAG+++G+SNTAG LAG+ G TG +L+ SW VF +
Sbjct: 460 NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQHG-----------SWDDVFKVSV 508
Query: 419 LLCILSSFVFLLFSTGERIFD 439
+L ++ + V+ LFSTGE+I D
Sbjct: 509 VLYLVGTLVWNLFSTGEKIID 529
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q05B21|VGLU1_XENTR Vesicular glutamate transporter 1 OS=Xenopus tropicalis GN=slc17a7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 225/450 (50%), Gaps = 31/450 (6%)
Query: 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSK---------------GT 48
P+RY+I I++ + C+ + R +A + + V + +K G
Sbjct: 59 LPRRYIIAIMSGLGFCISFGIRCNLGVAIVSMVNNNTVYKGNKIVIEQAQFTWDPETVGM 118
Query: 49 ILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVA-RLL 107
I +F++GY +Q+PGG+ QK +V F+ V S+ + F V+ R+L
Sbjct: 119 IHGSFFWGYIVTQIPGGYICQKFAANRVFGFAIVATSTLNMLIPSAARVHFACVICVRIL 178
Query: 108 VGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167
G+ +G +P+ H + ++W PP ERSR + G Y GA + M LV+Y+G +SVF
Sbjct: 179 QGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVLVQYSGWSSVF 238
Query: 168 NAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNG-GSAMKAAK 226
+ G MW + W + + P + HP S E ++ + G + M K
Sbjct: 239 YVYGSFGIMWYMFWILVSYESP-AIHPTIS-----EEEKKYIEESIGESTGLMNPMAKFK 292
Query: 227 IPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMF 286
PW++ ++PV+AI+V NF + Y+L+ P YFE + ++G +P+L M
Sbjct: 293 APWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGLLSALPHLVMT 352
Query: 287 IFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIAL 346
I IGG +AD L TKRI+S T RK +N GF + + L+ + S AI +A+
Sbjct: 353 IIVPIGGQIADFLRTKRIMSTTNVRKMMNCGGFGMEATLLLVVGYSHSRGVAISFLVLAV 412
Query: 347 GFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSS 406
GF +GF VNH+DIAPRYA I+MGISN GTL+G+V + G + + +
Sbjct: 413 GFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIVGAM--------TKHKT 464
Query: 407 PESWRAVFFIPGLLCILSSFVFLLFSTGER 436
E W+ VF I L+ + +F++GE+
Sbjct: 465 REEWQYVFLIASLVHYGGVLFYGIFASGEK 494
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. Xenopus tropicalis (taxid: 8364) |
| >sp|Q6INC8|VGLU1_XENLA Vesicular glutamate transporter 1 OS=Xenopus laevis GN=slc17a7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/449 (31%), Positives = 226/449 (50%), Gaps = 31/449 (6%)
Query: 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSK---------------GTI 49
P+RY+I I++ + C+ + R +A + + V + +K G I
Sbjct: 60 PRRYIIAIMSGLGFCISFGIRCNLGVAIVSMVNNNTVYKGNKLVIEQAQFNWDPETVGMI 119
Query: 50 LSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVA-RLLV 108
+F++GY +Q+PGG+ QK +V F+ V S+ + F V+ R+L
Sbjct: 120 HGSFFWGYIVTQIPGGYICQKFAANRVFGFAIVATSTLNMLIPSAARVHFACVICVRILQ 179
Query: 109 GVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFN 168
G+ +G +P+ H + ++W PP ERSR + G Y GA + M LV+Y+G +SVF
Sbjct: 180 GLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVLVQYSGWSSVFY 239
Query: 169 AEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNG-GSAMKAAKI 227
+ G W + W + + P ++HP S E ++ + G + M K
Sbjct: 240 VYGSFGITWYMFWILVSYESP-AQHPTIS-----EEERKYIEESIGESTGFMNPMAKFKA 293
Query: 228 PWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFI 287
PW++ ++PV+AI+V NF + Y+L+ P YFE ++ ++G +P+L M I
Sbjct: 294 PWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFAISKVGLLSALPHLVMTI 353
Query: 288 FSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALG 347
IGG +AD L TKRI+S T RK +N GF + + L+ + S AI +A+G
Sbjct: 354 IVPIGGQIADFLRTKRIMSTTNVRKMMNCGGFGMEATLLLVVGYSHSRGVAISFLVLAVG 413
Query: 348 FLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSP 407
F +GF VNH+DIAPRYA I+MGISN GTL+G+V + G + + +
Sbjct: 414 FSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIVGAM--------TKHKTR 465
Query: 408 ESWRAVFFIPGLLCILSSFVFLLFSTGER 436
E W+ VF I L+ + +F++GE+
Sbjct: 466 EEWQYVFLIASLVHYGGVVFYGIFASGEK 494
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. Xenopus laevis (taxid: 8355) |
| >sp|Q9JI12|VGLU2_RAT Vesicular glutamate transporter 2 OS=Rattus norvegicus GN=Slc17a6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/450 (30%), Positives = 229/450 (50%), Gaps = 31/450 (6%)
Query: 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSK---------------GT 48
P+RY+I I++ + C+ + R +A + + +++ K G
Sbjct: 67 LPRRYIIAIMSGLGFCISFGIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGM 126
Query: 49 ILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVF--ILVVARL 106
I +F++GY +Q+PGG+ A ++ +V + +L +ST L V ++ R+
Sbjct: 127 IHGSFFWGYIITQIPGGYIASRLAANRVF-GAAILLTSTLNMLIPSAARVHYGCVIFVRI 185
Query: 107 LVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSV 166
L G+ +G +P+ H + ++W PP ERSR + + G Y GA + M LV+Y G +SV
Sbjct: 186 LQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGILVQYTGWSSV 245
Query: 167 FNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAK 226
F + G +W + W + + P ++HP + E + + + N AM+ K
Sbjct: 246 FYVYGSFGMVWYMFWLLVSYESP-AKHPTIT----DEERRYIEESIGESANLLGAMEKFK 300
Query: 227 IPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMF 286
PW++ ++PV+AI+V NF + Y+L+ P YFE + ++G +P+L M
Sbjct: 301 TPWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMT 360
Query: 287 IFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIAL 346
I IGG +AD L +K+ILS T RK +N GF + + L+ + + AI +A+
Sbjct: 361 IIVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAV 420
Query: 347 GFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSS 406
GF +GF VNH+DIAPRYA I+MGISN GTL+G+V + G + + S
Sbjct: 421 GFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKN--------KS 472
Query: 407 PESWRAVFFIPGLLCILSSFVFLLFSTGER 436
E W+ VF I L+ + LF++GE+
Sbjct: 473 REEWQYVFLIAALVHYGGVIFYALFASGEK 502
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also play a role in the endocrine glutamatergic system of other tissues such as pineal gland and pancreas. May also mediate the transport of inorganic phosphate. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 439 | ||||||
| 255578499 | 442 | D-galactonate transporter, putative [Ric | 0.997 | 0.990 | 0.851 | 0.0 | |
| 225428312 | 442 | PREDICTED: probable anion transporter 5 | 0.997 | 0.990 | 0.854 | 0.0 | |
| 449438791 | 442 | PREDICTED: probable anion transporter 5- | 1.0 | 0.993 | 0.834 | 0.0 | |
| 224104815 | 442 | predicted protein [Populus trichocarpa] | 0.995 | 0.988 | 0.853 | 0.0 | |
| 312282855 | 455 | unnamed protein product [Thellungiella h | 0.977 | 0.942 | 0.805 | 0.0 | |
| 15241475 | 432 | putative anion transporter 5 [Arabidopsi | 0.974 | 0.990 | 0.798 | 0.0 | |
| 297791403 | 432 | hypothetical protein ARALYDRAFT_917170 [ | 0.974 | 0.990 | 0.796 | 0.0 | |
| 356563838 | 429 | PREDICTED: probable anion transporter 5- | 0.977 | 1.0 | 0.805 | 0.0 | |
| 358249080 | 429 | uncharacterized protein LOC100812608 [Gl | 0.977 | 1.0 | 0.799 | 0.0 | |
| 357470225 | 553 | hypothetical protein MTR_4g030900 [Medic | 0.956 | 0.759 | 0.768 | 0.0 |
| >gi|255578499|ref|XP_002530113.1| D-galactonate transporter, putative [Ricinus communis] gi|223530367|gb|EEF32257.1| D-galactonate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/439 (85%), Positives = 415/439 (94%), Gaps = 1/439 (0%)
Query: 2 MNFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQ 61
+ FPKRY IVILTF+STCVCYIERVGFSIAYT AADAAGVNQS+KGT+L+TFYYGYACSQ
Sbjct: 4 LKFPKRYWIVILTFVSTCVCYIERVGFSIAYTVAADAAGVNQSTKGTMLATFYYGYACSQ 63
Query: 62 VPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHT 121
VPGGWAAQ+IGGRKVLL SFVLWSSTCF + LDPN V +LV+ARLLVGV+QGFIFPSIHT
Sbjct: 64 VPGGWAAQRIGGRKVLLLSFVLWSSTCFLVPLDPNRVSVLVMARLLVGVAQGFIFPSIHT 123
Query: 122 VLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLW 181
VLAQWVPPHERSRSVSLTTSGMYLGAAMGML LPSLVKY GP SVF+ EAALG +WSLLW
Sbjct: 124 VLAQWVPPHERSRSVSLTTSGMYLGAAMGMLVLPSLVKYKGPQSVFHIEAALGALWSLLW 183
Query: 182 FKYATDPPRSEHPKASAAGFGESLLPMR-DQKVKVDNGGSAMKAAKIPWKRIVVNLPVWA 240
KYA+DPPRSEHPKA+AAGFGESLLP++ QK K++NGG+ +K AKIPWKRI+++LP+WA
Sbjct: 184 VKYASDPPRSEHPKAAAAGFGESLLPIKGSQKTKMENGGTGIKTAKIPWKRILLSLPIWA 243
Query: 241 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300
IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQ+MGSSKM+PYLNMFIFSNIGGVVADHLI
Sbjct: 244 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYLNMFIFSNIGGVVADHLI 303
Query: 301 TKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNH 360
TKRILSVT+TRK+LNT+GF+VASIALMALP+FR+S GA+FCSS+ALGFLALGRAGFAVNH
Sbjct: 304 TKRILSVTKTRKYLNTLGFLVASIALMALPLFRTSTGAVFCSSVALGFLALGRAGFAVNH 363
Query: 361 MDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLL 420
MDIAPRYAGIVMG+SNTAGTLAGI+GVD+TG+LLE AKT YSDLSSPESWR+VFFIPGLL
Sbjct: 364 MDIAPRYAGIVMGVSNTAGTLAGIIGVDLTGQLLEGAKTAYSDLSSPESWRSVFFIPGLL 423
Query: 421 CILSSFVFLLFSTGERIFD 439
CI S+F FLLF+TGERIFD
Sbjct: 424 CIFSTFTFLLFATGERIFD 442
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428312|ref|XP_002282945.1| PREDICTED: probable anion transporter 5 [Vitis vinifera] gi|147810087|emb|CAN64710.1| hypothetical protein VITISV_043725 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/439 (85%), Positives = 410/439 (93%), Gaps = 1/439 (0%)
Query: 2 MNFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQ 61
+ FPKRYLIVILTFISTCVCY+ERVGFSIAYT AADAAGVNQSSKGTILSTFYYGYACSQ
Sbjct: 4 LKFPKRYLIVILTFISTCVCYVERVGFSIAYTVAADAAGVNQSSKGTILSTFYYGYACSQ 63
Query: 62 VPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHT 121
VPGGWAAQK+GGR+VLL SFVLWS TC LDPN+V ++V+ARLLVGV+QGFIFPSIHT
Sbjct: 64 VPGGWAAQKLGGRRVLLLSFVLWSLTCALFPLDPNHVRLIVMARLLVGVAQGFIFPSIHT 123
Query: 122 VLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLW 181
VLAQWVPPHERSRSVSLTTSGMYLGAA GML LPSLVKY GP SVF AEA LG MWSLLW
Sbjct: 124 VLAQWVPPHERSRSVSLTTSGMYLGAAAGMLVLPSLVKYRGPQSVFFAEATLGAMWSLLW 183
Query: 182 FKYATDPPRSEHPKASAAGFGESLLPMR-DQKVKVDNGGSAMKAAKIPWKRIVVNLPVWA 240
KYA+DPPR+E+PKA+A+GFGESLLPMR QKVKV+NGG+++K +KIPWKRI ++LPVWA
Sbjct: 184 LKYASDPPRAEYPKATASGFGESLLPMRGSQKVKVENGGNSVKTSKIPWKRIFISLPVWA 243
Query: 241 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300
IVVNNFTFHYALYVLMNWLPTYFELGL+LSLQEMGSSKM+PYLNMFIFSNIGGVVADHLI
Sbjct: 244 IVVNNFTFHYALYVLMNWLPTYFELGLRLSLQEMGSSKMLPYLNMFIFSNIGGVVADHLI 303
Query: 301 TKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNH 360
TKRI+SVT+TRKFLNT+GF+VAS+ALMALP FR+S GA+FCSS+ALGFLALGRAGFAVNH
Sbjct: 304 TKRIMSVTKTRKFLNTIGFIVASLALMALPTFRTSGGAVFCSSLALGFLALGRAGFAVNH 363
Query: 361 MDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLL 420
MD+APRYAGIVMG+SNTAGTLAGIVGVD+TGKLLEAA+ SDLS PESWR VFFIPGLL
Sbjct: 364 MDVAPRYAGIVMGVSNTAGTLAGIVGVDLTGKLLEAAQIANSDLSGPESWRLVFFIPGLL 423
Query: 421 CILSSFVFLLFSTGERIFD 439
CI SSFVFLLFSTGERIFD
Sbjct: 424 CIFSSFVFLLFSTGERIFD 442
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438791|ref|XP_004137171.1| PREDICTED: probable anion transporter 5-like [Cucumis sativus] gi|449522478|ref|XP_004168253.1| PREDICTED: probable anion transporter 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/440 (83%), Positives = 405/440 (92%), Gaps = 1/440 (0%)
Query: 1 MMNFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACS 60
MM PKRY IV+LTFI T VCY+ERVGFSIAYT AADA GV+QSSKGTILSTFYYGYACS
Sbjct: 3 MMKIPKRYWIVLLTFICTSVCYVERVGFSIAYTFAADAVGVDQSSKGTILSTFYYGYACS 62
Query: 61 QVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIH 120
QVPGGWAAQKIGG++VLL SF+LWS TC + LDP+ V +LV+ARLLVGV+QGFIFPSIH
Sbjct: 63 QVPGGWAAQKIGGKRVLLISFILWSLTCALVPLDPSRVMVLVIARLLVGVAQGFIFPSIH 122
Query: 121 TVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLL 180
TVLAQWVPPHERSRSVSLTTSGMYLGAA GML LPSLVKY GP SVF EA LG WS+L
Sbjct: 123 TVLAQWVPPHERSRSVSLTTSGMYLGAAAGMLILPSLVKYRGPQSVFATEALLGATWSVL 182
Query: 181 WFKYATDPPRSEHPKASAAGFGESLLPMR-DQKVKVDNGGSAMKAAKIPWKRIVVNLPVW 239
W KYA+DPPRSEHPKA+AAGFGESLLP++ +QKVKV+NGG++ + + IPWK+I+++LPVW
Sbjct: 183 WLKYASDPPRSEHPKAAAAGFGESLLPIKGNQKVKVENGGTSTRTSNIPWKKILLSLPVW 242
Query: 240 AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHL 299
AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKM+PYLNMF+FSNIGG+ ADHL
Sbjct: 243 AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMLPYLNMFLFSNIGGIAADHL 302
Query: 300 ITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVN 359
+TKRILSVTRTRKFLNT+GF VAS+ALMA+PIFR+S GAIFCSS+ALGFLALGRAGFAVN
Sbjct: 303 VTKRILSVTRTRKFLNTIGFAVASLALMAIPIFRTSGGAIFCSSVALGFLALGRAGFAVN 362
Query: 360 HMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGL 419
HMDIAPRYAGIVMG+SNTAGTLAGI+GVD+TGKLLEAAK T SDLSSPESWRAVF IPGL
Sbjct: 363 HMDIAPRYAGIVMGVSNTAGTLAGIIGVDLTGKLLEAAKATNSDLSSPESWRAVFSIPGL 422
Query: 420 LCILSSFVFLLFSTGERIFD 439
LCILSS VFLLFSTGERIFD
Sbjct: 423 LCILSSIVFLLFSTGERIFD 442
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104815|ref|XP_002313576.1| predicted protein [Populus trichocarpa] gi|222849984|gb|EEE87531.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/438 (85%), Positives = 409/438 (93%), Gaps = 1/438 (0%)
Query: 3 NFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQV 62
N P+RY IVILTF+ TCVCYIERVGFSIAYT AADAAGVNQSSKGTILSTFYYGYACSQV
Sbjct: 5 NIPRRYWIVILTFVCTCVCYIERVGFSIAYTIAADAAGVNQSSKGTILSTFYYGYACSQV 64
Query: 63 PGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTV 122
PGGWAAQK GGRKVLL SF+LWSSTCF + LDPN V +LVVARLLVGV+QGFIFPSIHTV
Sbjct: 65 PGGWAAQKFGGRKVLLLSFLLWSSTCFLIPLDPNRVVLLVVARLLVGVAQGFIFPSIHTV 124
Query: 123 LAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182
LAQWVPPHERSRSVSLTTSGMYLGAAMGML LPSLVK+ GP SVF AEA LG WS+LW
Sbjct: 125 LAQWVPPHERSRSVSLTTSGMYLGAAMGMLVLPSLVKFKGPQSVFLAEAILGLSWSVLWL 184
Query: 183 KYATDPPRSEHPKASAAGFGESLLPMR-DQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAI 241
++A+DPPRSEHPKA+AAGFGESLLP++ QK K++NGG+A++ A+IPWKRI V+LP+WAI
Sbjct: 185 RFASDPPRSEHPKATAAGFGESLLPLKASQKAKMENGGTAVRTARIPWKRIFVSLPIWAI 244
Query: 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLIT 301
VVNNFTFHYALYVLMNWLPTYFE GLQLSLQEMGSSKMMPY NMFIFSNIGGVVADHLIT
Sbjct: 245 VVNNFTFHYALYVLMNWLPTYFEQGLQLSLQEMGSSKMMPYFNMFIFSNIGGVVADHLIT 304
Query: 302 KRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHM 361
KRILSVTRTRK LNTVGF+VAS+AL+ALPIFR+S+GA+FCSS+ALGFLALGRAGFAVNHM
Sbjct: 305 KRILSVTRTRKLLNTVGFLVASLALIALPIFRTSSGAVFCSSVALGFLALGRAGFAVNHM 364
Query: 362 DIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLC 421
DIAPRYAGIVMG+SNTAGTLAGI+GVD+TGK+LEAA TTYSDLSSPESWR+VF IPGLLC
Sbjct: 365 DIAPRYAGIVMGVSNTAGTLAGIIGVDLTGKILEAATTTYSDLSSPESWRSVFVIPGLLC 424
Query: 422 ILSSFVFLLFSTGERIFD 439
I S+FVFLLFSTGERIFD
Sbjct: 425 IFSTFVFLLFSTGERIFD 442
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312282855|dbj|BAJ34293.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/437 (80%), Positives = 386/437 (88%), Gaps = 8/437 (1%)
Query: 3 NFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQV 62
N P+RY+IV LTF+ST VCYIERVGFSIAYT AADAAG+NQSSKGTILSTF+ GYACSQV
Sbjct: 27 NIPQRYVIVFLTFLSTSVCYIERVGFSIAYTVAADAAGINQSSKGTILSTFFVGYACSQV 86
Query: 63 PGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTV 122
PGGWAAQKIGGRKVLL SFVLWSSTCF + LDPN V +LV ARLLVGV+QGFIFPSIHTV
Sbjct: 87 PGGWAAQKIGGRKVLLLSFVLWSSTCFLVPLDPNRVGLLVFARLLVGVAQGFIFPSIHTV 146
Query: 123 LAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182
LAQWVPPHERSR VS+TTSGMYLGAA+GM LP+LV+ GP SVF AEA GG+WSLLW
Sbjct: 147 LAQWVPPHERSRLVSITTSGMYLGAALGMWLLPALVELRGPESVFLAEALAGGIWSLLWI 206
Query: 183 KYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242
+YATDPPRSEHPKA+AAGFG +LLP N + K IPWK+I+++LPVWAIV
Sbjct: 207 RYATDPPRSEHPKAAAAGFGGALLP--------TNNVNHHKVTHIPWKKIMLSLPVWAIV 258
Query: 243 VNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITK 302
VNNFTFHYALYVLMNWLPTYFELGLQ+SLQ M SSKM+PYLNMF+FS +GG +AD+LITK
Sbjct: 259 VNNFTFHYALYVLMNWLPTYFELGLQISLQGMDSSKMVPYLNMFVFSIVGGFIADYLITK 318
Query: 303 RILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD 362
RILSVTRTRKFLNTVGF+VAS ALMALP FR+SNG I CSS+ALGFLALGRAGFAVNHMD
Sbjct: 319 RILSVTRTRKFLNTVGFLVASAALMALPQFRTSNGVILCSSVALGFLALGRAGFAVNHMD 378
Query: 363 IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCI 422
IAPRYAGIVMG+SNTAGTLAGI+GVD+TGKLLEA+K YSDLS PESWRAVFFIPGLLCI
Sbjct: 379 IAPRYAGIVMGVSNTAGTLAGIIGVDLTGKLLEASKLVYSDLSHPESWRAVFFIPGLLCI 438
Query: 423 LSSFVFLLFSTGERIFD 439
SS VFLLFSTGERIFD
Sbjct: 439 FSSVVFLLFSTGERIFD 455
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241475|ref|NP_199250.1| putative anion transporter 5 [Arabidopsis thaliana] gi|75262629|sp|Q9FKV1.1|ANTR5_ARATH RecName: Full=Probable anion transporter 5; AltName: Full=Phosphate transporter PHT4;6; Flags: Precursor gi|10176892|dbj|BAB10122.1| Na+-dependent inorganic phosphate cotransporter-like protein [Arabidopsis thaliana] gi|27754495|gb|AAO22695.1| putative Na+-dependent inorganic phosphate cotransporter [Arabidopsis thaliana] gi|332007719|gb|AED95102.1| putative anion transporter 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/437 (79%), Positives = 385/437 (88%), Gaps = 9/437 (2%)
Query: 3 NFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQV 62
N P+RY+IV LTF+STCVCYIERVGFSIAYT AADAAG+NQSSKGTILSTF+ GYACSQV
Sbjct: 5 NIPQRYVIVFLTFLSTCVCYIERVGFSIAYTVAADAAGINQSSKGTILSTFFVGYACSQV 64
Query: 63 PGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTV 122
PGGWAAQKIGGRKVLL SFVLWSSTCF + LDPN V +LVVARLLVGV+QGFIFPSIHTV
Sbjct: 65 PGGWAAQKIGGRKVLLLSFVLWSSTCFLVPLDPNRVGLLVVARLLVGVAQGFIFPSIHTV 124
Query: 123 LAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182
LAQWVPPHERSR VS+TTSGMYLGAA+GM LP+LV+ GP SVF AEA G +WSLLW
Sbjct: 125 LAQWVPPHERSRLVSITTSGMYLGAALGMWLLPALVELRGPESVFLAEALAGVIWSLLWI 184
Query: 183 KYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242
+YATDPPRSEHPKA+AAGFG +LLP KV + IPWK+I+++LPVWAIV
Sbjct: 185 RYATDPPRSEHPKAAAAGFGGALLPTNVNHHKVTH---------IPWKKIMLSLPVWAIV 235
Query: 243 VNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITK 302
VNNFTFHYALYVLMNWLPTYFELGLQ+SLQ M SSKM+PYLNMF+FS +GG +AD+LITK
Sbjct: 236 VNNFTFHYALYVLMNWLPTYFELGLQISLQGMDSSKMVPYLNMFVFSIVGGFIADYLITK 295
Query: 303 RILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD 362
RILSVTRTRKFLNTVGF++AS ALM LP+FR+ NG I CSS+ALGFLALGRAGFAVNHMD
Sbjct: 296 RILSVTRTRKFLNTVGFLIASAALMVLPMFRTENGVILCSSVALGFLALGRAGFAVNHMD 355
Query: 363 IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCI 422
IAPRYAGIVMG+SNTAGTLAGI+GVD+TGKLLEA+K YSDLS PESWR VFFIPGLLCI
Sbjct: 356 IAPRYAGIVMGVSNTAGTLAGIIGVDLTGKLLEASKLVYSDLSHPESWRVVFFIPGLLCI 415
Query: 423 LSSFVFLLFSTGERIFD 439
SS VFLLFSTGERIFD
Sbjct: 416 FSSVVFLLFSTGERIFD 432
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791403|ref|XP_002863586.1| hypothetical protein ARALYDRAFT_917170 [Arabidopsis lyrata subsp. lyrata] gi|297309421|gb|EFH39845.1| hypothetical protein ARALYDRAFT_917170 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/437 (79%), Positives = 384/437 (87%), Gaps = 9/437 (2%)
Query: 3 NFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQV 62
N P+RY+IV LTF+STCVCYIERVGFSIAYT AADAAG+NQSSKGTILSTF+ GYACSQV
Sbjct: 5 NIPQRYVIVFLTFLSTCVCYIERVGFSIAYTVAADAAGINQSSKGTILSTFFVGYACSQV 64
Query: 63 PGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTV 122
PGGWAAQKIGGRKVLL SFVLWSSTCF + LDPN V +LV ARLLVGV+QGFIFPSIHTV
Sbjct: 65 PGGWAAQKIGGRKVLLLSFVLWSSTCFLVPLDPNRVGLLVFARLLVGVAQGFIFPSIHTV 124
Query: 123 LAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182
LAQWVPPHERSR VS+TTSGMYLGAA+GM LP+LV+ GP SVF AEA G +WSLLW
Sbjct: 125 LAQWVPPHERSRLVSITTSGMYLGAALGMWLLPALVELRGPESVFLAEALAGVIWSLLWI 184
Query: 183 KYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242
+YATDPPRSEHPKA+AAGFG +LLP KV + IPWK+I+++LPVWAIV
Sbjct: 185 RYATDPPRSEHPKAAAAGFGGALLPTNVNHHKVTH---------IPWKKIMLSLPVWAIV 235
Query: 243 VNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITK 302
VNNFTFHYALYVLMNWLPTYFELGLQ+SLQ M SSKM+PYLNMF+FS +GG +AD+LITK
Sbjct: 236 VNNFTFHYALYVLMNWLPTYFELGLQISLQGMDSSKMVPYLNMFVFSIVGGFIADYLITK 295
Query: 303 RILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD 362
RILSVTRTRKFLNTVGF++AS ALM LP+FR+ NG I CSS+ALGFLALGRAGFAVNHMD
Sbjct: 296 RILSVTRTRKFLNTVGFLIASAALMVLPMFRTENGVILCSSVALGFLALGRAGFAVNHMD 355
Query: 363 IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCI 422
IAPRYAGIVMG+SNTAGTLAGI+GVD+TGKLLEA+K YSDLS PESWR VFFIPGLLCI
Sbjct: 356 IAPRYAGIVMGVSNTAGTLAGIIGVDLTGKLLEASKLVYSDLSHPESWRVVFFIPGLLCI 415
Query: 423 LSSFVFLLFSTGERIFD 439
SS VFLLFSTGERIFD
Sbjct: 416 FSSVVFLLFSTGERIFD 432
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563838|ref|XP_003550165.1| PREDICTED: probable anion transporter 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/438 (80%), Positives = 387/438 (88%), Gaps = 9/438 (2%)
Query: 2 MNFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQ 61
M P RYLIVILTF+ T VCYIERVGFSIAYT AAD AGVNQSSKGTILSTFYYGYACSQ
Sbjct: 1 MKLPVRYLIVILTFVCTSVCYIERVGFSIAYTVAADGAGVNQSSKGTILSTFYYGYACSQ 60
Query: 62 VPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHT 121
VPGGWAAQKIGGR+VLL SF+LWS TC L LDPN V +LV+ARLLVG++QGFIFPSIHT
Sbjct: 61 VPGGWAAQKIGGRRVLLLSFLLWSLTCALLPLDPNRVMLLVIARLLVGIAQGFIFPSIHT 120
Query: 122 VLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLW 181
VLAQWVPPHERSRSVSLTTSGMYLGAA+GML LP+LVK+ GP SVF AEAALG WSLLW
Sbjct: 121 VLAQWVPPHERSRSVSLTTSGMYLGAALGMLLLPTLVKFRGPQSVFLAEAALGASWSLLW 180
Query: 182 FKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAI 241
FKYATDP K++A+G GES+LP+ K+D +AKIPW +I+ + PVWAI
Sbjct: 181 FKYATDP------KSTASGVGESVLPVNK---KIDTHNKKPLSAKIPWVKILTSFPVWAI 231
Query: 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLIT 301
VVNNFTFHYALYVLMNWLPTYFELGLQLSLQ+MGSSKMMPYLNMF+FSNIGGVVAD+LIT
Sbjct: 232 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMMPYLNMFLFSNIGGVVADYLIT 291
Query: 302 KRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHM 361
+RILSVT+TRKFLNTVGF+VAS+AL+ +P FR+S GA+FCSS+ALGFLALGRAGFAVNHM
Sbjct: 292 RRILSVTKTRKFLNTVGFLVASLALVIIPSFRTSGGAVFCSSVALGFLALGRAGFAVNHM 351
Query: 362 DIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLC 421
DIAPRYAGIVMG+SNTAGTLAGIVGVD+TGKLLEAAK SDLSSPESWRAVF IPG LC
Sbjct: 352 DIAPRYAGIVMGVSNTAGTLAGIVGVDLTGKLLEAAKAANSDLSSPESWRAVFSIPGFLC 411
Query: 422 ILSSFVFLLFSTGERIFD 439
I SSFVFLLFSTGERIFD
Sbjct: 412 IFSSFVFLLFSTGERIFD 429
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358249080|ref|NP_001239989.1| uncharacterized protein LOC100812608 [Glycine max] gi|255646250|gb|ACU23609.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/438 (79%), Positives = 388/438 (88%), Gaps = 9/438 (2%)
Query: 2 MNFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQ 61
M P RYLIVILTFI T VCYIERVGFSIAYT AAD AGVNQSSKGTILSTFYYGYACSQ
Sbjct: 1 MKLPVRYLIVILTFICTLVCYIERVGFSIAYTVAADGAGVNQSSKGTILSTFYYGYACSQ 60
Query: 62 VPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHT 121
VPGGWAAQKIGGR+VLL SF+LWS TC L LDPN V +LV+ARLLVG++QGFIFPSIHT
Sbjct: 61 VPGGWAAQKIGGRRVLLLSFLLWSLTCALLPLDPNRVLLLVIARLLVGIAQGFIFPSIHT 120
Query: 122 VLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLW 181
VLAQWVPPHERSRSVSLTTSGMYLGAA+GML LP+LVK+ GP SVF AEAALG WSLLW
Sbjct: 121 VLAQWVPPHERSRSVSLTTSGMYLGAALGMLLLPTLVKFRGPESVFLAEAALGASWSLLW 180
Query: 182 FKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAI 241
FKYATDP K++A+G GES+LP+ K+D + + +AKIPW I+ + PVWAI
Sbjct: 181 FKYATDP------KSTASGVGESVLPVNK---KIDTHNTKLPSAKIPWVNILTSFPVWAI 231
Query: 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLIT 301
VVNNFTFHYALYVLMNWLPTYFELGL+LSLQ+MGSSKMMPYLNMF+FSNIGGVVAD+LIT
Sbjct: 232 VVNNFTFHYALYVLMNWLPTYFELGLKLSLQDMGSSKMMPYLNMFLFSNIGGVVADYLIT 291
Query: 302 KRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHM 361
+RILSVT+TRKFLNT+GF+VAS+AL+ +P FR+S GA+FCSS+ALGFLALGRAGFAVNHM
Sbjct: 292 RRILSVTKTRKFLNTLGFLVASLALVVIPSFRTSGGAVFCSSVALGFLALGRAGFAVNHM 351
Query: 362 DIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLC 421
D+APRYAGIVMG+SNTAGTLAGIVGVD+TGKLLEAAK SDLSSPESWR VFFIPG LC
Sbjct: 352 DVAPRYAGIVMGVSNTAGTLAGIVGVDLTGKLLEAAKAANSDLSSPESWRIVFFIPGFLC 411
Query: 422 ILSSFVFLLFSTGERIFD 439
+ SSFVFLLFSTGERIFD
Sbjct: 412 VFSSFVFLLFSTGERIFD 429
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357470225|ref|XP_003605397.1| hypothetical protein MTR_4g030900 [Medicago truncatula] gi|357470257|ref|XP_003605413.1| hypothetical protein MTR_4g031070 [Medicago truncatula] gi|355506452|gb|AES87594.1| hypothetical protein MTR_4g030900 [Medicago truncatula] gi|355506468|gb|AES87610.1| hypothetical protein MTR_4g031070 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/436 (76%), Positives = 377/436 (86%), Gaps = 16/436 (3%)
Query: 1 MMNFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACS 60
M NFP RYLIV+LTFI T VCYIERVGFSIAYT AADAAG+NQS+KGTILSTFYYGYACS
Sbjct: 1 MQNFPVRYLIVLLTFICTSVCYIERVGFSIAYTVAADAAGINQSTKGTILSTFYYGYACS 60
Query: 61 QVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIH 120
QVPGG+ AQKIGGRK+LLFSF+LWS TC L LDPN ILV ARLLVGV+QGFIFPSIH
Sbjct: 61 QVPGGYFAQKIGGRKILLFSFLLWSLTCALLPLDPNKTLILVTARLLVGVAQGFIFPSIH 120
Query: 121 TVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLL 180
TVLAQWVPPHERSRSVSLTTSGMYLGAA GMLFLPSLVK+ GP SVF AE+ LG +W +
Sbjct: 121 TVLAQWVPPHERSRSVSLTTSGMYLGAAFGMLFLPSLVKFKGPQSVFVAESFLGFVWCFI 180
Query: 181 WFKYATDPPRSEHPKASAAGFGESLLPMR--------DQKVKVD-NGGSAMKAA-KIPWK 230
WF+Y++DP K+SA+G GESLLP+ D KV V+ NGG K+ IPW
Sbjct: 181 WFRYSSDP------KSSASGAGESLLPVNKKIDRRVSDLKVGVEKNGGEGKKSGVGIPWV 234
Query: 231 RIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSN 290
+I+ +LPVWAIVVNNFTFHYALYVLMNWLPTYFELGL+LSL EMGSSKM+PYLNMF+FSN
Sbjct: 235 KILTSLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLKLSLHEMGSSKMLPYLNMFVFSN 294
Query: 291 IGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLA 350
IGGVVAD+LIT+R++SVTRTRKFLNT+GF+VAS AL+ +P FR+S GA+FCSS+ALGFLA
Sbjct: 295 IGGVVADYLITRRVMSVTRTRKFLNTIGFLVASFALIVIPSFRTSGGAVFCSSVALGFLA 354
Query: 351 LGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESW 410
LGRAGFAVNHMD+APRYAGIVMG+SNTAGTLAGIVGVD+TGKLLEAAK + SDLS+PESW
Sbjct: 355 LGRAGFAVNHMDVAPRYAGIVMGVSNTAGTLAGIVGVDLTGKLLEAAKASDSDLSTPESW 414
Query: 411 RAVFFIPGLLCILSSF 426
R VFFIPGLLC+ SS
Sbjct: 415 RLVFFIPGLLCVFSSL 430
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 439 | ||||||
| TAIR|locus:2158710 | 432 | PHT4;6 "AT5G44370" [Arabidopsi | 0.979 | 0.995 | 0.794 | 3e-188 | |
| TAIR|locus:2060694 | 512 | PHT4;1 "AT2G29650" [Arabidopsi | 0.940 | 0.806 | 0.366 | 2.9e-71 | |
| TAIR|locus:2126066 | 541 | ANTR2 "AT4G00370" [Arabidopsis | 0.858 | 0.696 | 0.368 | 1e-68 | |
| TAIR|locus:2065615 | 512 | PHT4;2 "AT2G38060" [Arabidopsi | 0.945 | 0.810 | 0.316 | 4.3e-54 | |
| RGD|620531 | 582 | Slc17a6 "solute carrier family | 0.952 | 0.718 | 0.307 | 7e-54 | |
| ZFIN|ZDB-GENE-030616-554 | 584 | slc17a6b "solute carrier famil | 0.947 | 0.712 | 0.311 | 8.9e-54 | |
| UNIPROTKB|A6QLI1 | 582 | SLC17A6 "Vesicular glutamate t | 0.952 | 0.718 | 0.305 | 1.1e-53 | |
| UNIPROTKB|F1PBW6 | 583 | SLC17A6 "Uncharacterized prote | 0.952 | 0.716 | 0.305 | 1.1e-53 | |
| UNIPROTKB|Q9P2U8 | 582 | SLC17A6 "Vesicular glutamate t | 0.952 | 0.718 | 0.305 | 1.1e-53 | |
| UNIPROTKB|F1SFZ2 | 582 | SLC17A6 "Uncharacterized prote | 0.952 | 0.718 | 0.305 | 1.1e-53 |
| TAIR|locus:2158710 PHT4;6 "AT5G44370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1825 (647.5 bits), Expect = 3.0e-188, P = 3.0e-188
Identities = 349/439 (79%), Positives = 386/439 (87%)
Query: 1 MMNFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACS 60
+ N P+RY+IV LTF+STCVCYIERVGFSIAYT AADAAG+NQSSKGTILSTF+ GYACS
Sbjct: 3 LSNIPQRYVIVFLTFLSTCVCYIERVGFSIAYTVAADAAGINQSSKGTILSTFFVGYACS 62
Query: 61 QVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIH 120
QVPGGWAAQKIGGRKVLL SFVLWSSTCF + LDPN V +LVVARLLVGV+QGFIFPSIH
Sbjct: 63 QVPGGWAAQKIGGRKVLLLSFVLWSSTCFLVPLDPNRVGLLVVARLLVGVAQGFIFPSIH 122
Query: 121 TVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLL 180
TVLAQWVPPHERSR VS+TTSGMYLGAA+GM LP+LV+ GP SVF AEA G +WSLL
Sbjct: 123 TVLAQWVPPHERSRLVSITTSGMYLGAALGMWLLPALVELRGPESVFLAEALAGVIWSLL 182
Query: 181 WFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWA 240
W +YATDPPRSEHPKA+AAGFG +LLP KV + IPWK+I+++LPVWA
Sbjct: 183 WIRYATDPPRSEHPKAAAAGFGGALLPTNVNHHKVTH---------IPWKKIMLSLPVWA 233
Query: 241 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300
IVVNNFTFHYALYVLMNWLPTYFELGLQ+SLQ M SSKM+PYLNMF+FS +GG +AD+LI
Sbjct: 234 IVVNNFTFHYALYVLMNWLPTYFELGLQISLQGMDSSKMVPYLNMFVFSIVGGFIADYLI 293
Query: 301 TKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNH 360
TKRILSVTRTRKFLNTVGF++AS ALM LP+FR+ NG I CSS+ALGFLALGRAGFAVNH
Sbjct: 294 TKRILSVTRTRKFLNTVGFLIASAALMVLPMFRTENGVILCSSVALGFLALGRAGFAVNH 353
Query: 361 MDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLL 420
MDIAPRYAGIVMG+SNTAGTLAGI+GVD+TGKLLEA+K YSDLS PESWR VFFIPGLL
Sbjct: 354 MDIAPRYAGIVMGVSNTAGTLAGIIGVDLTGKLLEASKLVYSDLSHPESWRVVFFIPGLL 413
Query: 421 CILSSFVFLLFSTGERIFD 439
CI SS VFLLFSTGERIFD
Sbjct: 414 CIFSSVVFLLFSTGERIFD 432
|
|
| TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 160/437 (36%), Positives = 247/437 (56%)
Query: 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVP 63
FPKR++IV+L F + +C ++RV SIA + G N ++ G I S+F++GY +Q+
Sbjct: 99 FPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIA 158
Query: 64 GGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPN-NVFILVVARLLVGVSQGFIFPSIHTV 122
GG A +GG++VL F + WS + + L+V R +GV +G P+++ +
Sbjct: 159 GGIWADTVGGKRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNI 218
Query: 123 LAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182
L++WVP ERSRS++L SGMYLG+ G+ F P L+ G SVF + +LG +W LW
Sbjct: 219 LSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWL 278
Query: 183 KYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242
A P E P +LLP ++K+ DN S IPW+ I+ PVWA++
Sbjct: 279 TKAESSPL-EDP---------TLLP-EERKLIADNCASKEPVKSIPWRLILSKPPVWALI 327
Query: 243 VNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITK 302
+F ++ ++L+ W+PTY+ L+ +L E G + P++ M I +N GG +AD L++
Sbjct: 328 SCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIADTLVS- 386
Query: 303 RILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD 362
R SVT RK + T+GF+ + L L S A+ C + + G A ++G NH D
Sbjct: 387 RGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQD 446
Query: 363 IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCI 422
IAPRY+G+++G+SNTAG LAG++G TG +L+ SW VF I L +
Sbjct: 447 IAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQHG-----------SWDDVFTISVGLYL 495
Query: 423 LSSFVFLLFSTGERIFD 439
+ + ++ LFSTGE+I D
Sbjct: 496 VGTVIWNLFSTGEKIID 512
|
|
| TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 146/396 (36%), Positives = 235/396 (59%)
Query: 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVP 63
FP+R++IV+L F S +C ++RV SIA + + ++ G I S+F++GY +Q+
Sbjct: 128 FPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQIL 187
Query: 64 GGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPN-NVFILVVARLLVGVSQGFIFPSIHTV 122
GG A K GG+ VL F V WS + + L+V R +G+ +G P+++ +
Sbjct: 188 GGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNM 247
Query: 123 LAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLV-KYNGPNSVFNAEAALGGMWSLLW 181
L++W+P ERSRS++L SGMYLG+ G+ F P L+ K+ P SVF + +LG +W LLW
Sbjct: 248 LSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWP-SVFYSFGSLGSIWFLLW 306
Query: 182 FKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMK--AAKIPWKRIVVNLPVW 239
K+A P+ + P S +++ KV GGS + IPWK I+ PVW
Sbjct: 307 LKFAYSSPKDD-PDLS------------EEEKKVILGGSKPREPVTVIPWKLILSKPPVW 353
Query: 240 AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHL 299
A+++++F ++ ++L+ W+PTY+ L+ +L E G ++P+L M +F+NIGG +AD L
Sbjct: 354 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTL 413
Query: 300 ITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVN 359
++ R LS+T RK + ++GF+ + L L ++ A+ C + + G A ++G N
Sbjct: 414 VS-RGLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSN 472
Query: 360 HMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395
H DI PRYAG+++G+SNTAG LAG+ G TG +L+
Sbjct: 473 HQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 508
|
|
| TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 138/436 (31%), Positives = 228/436 (52%)
Query: 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPG 64
P+R +VILT C+C +RV S+A AD G + S G + S+F +GY S V G
Sbjct: 96 PERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIG 155
Query: 65 GWAAQKIGGRKVLLFSFVLWS-STCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVL 123
G + GG++VL + LWS +T ++ L+ R G+++G PS+ T+L
Sbjct: 156 GALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLL 215
Query: 124 AQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFK 183
++W P ER+ +V ++ +G ++G +G+L P ++ G + F A+LG +W W
Sbjct: 216 SRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSS 275
Query: 184 YATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVN-LPVWAIV 242
T+ P+ + P + + E L + V+ S + P R++++ LP WAI+
Sbjct: 276 GVTNNPQ-DSPFITRS---ELRLIQAGKPVQP----STISPKPNPSLRLLLSKLPTWAII 327
Query: 243 VNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITK 302
N T ++ +VL++W+P YF+ ++L++ +P+ M I G +D LI +
Sbjct: 328 FANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLI-R 386
Query: 303 RILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD 362
SVT RK + ++GFM ++L+ L +S + A +IAL + +AGF +N D
Sbjct: 387 TGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQD 446
Query: 363 IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCI 422
IAP+YAG + GISN AGTLA IV TG ++ S++A + L
Sbjct: 447 IAPQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLG----------SFQAFLTVTAFLYF 496
Query: 423 LSSFVFLLFSTGERIF 438
++ +LLF+TGER+F
Sbjct: 497 ATTVFWLLFATGERVF 512
|
|
| RGD|620531 Slc17a6 "solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 138/449 (30%), Positives = 229/449 (51%)
Query: 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSK---------------GTI 49
P+RY+I I++ + C+ + R +A + + +++ K G I
Sbjct: 68 PRRYIIAIMSGLGFCISFGIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGMI 127
Query: 50 LSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFI--LVVARLL 107
+F++GY +Q+PGG+ A ++ +V + +L +ST L V ++ R+L
Sbjct: 128 HGSFFWGYIITQIPGGYIASRLAANRVF-GAAILLTSTLNMLIPSAARVHYGCVIFVRIL 186
Query: 108 VGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167
G+ +G +P+ H + ++W PP ERSR + + G Y GA + M LV+Y G +SVF
Sbjct: 187 QGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGILVQYTGWSSVF 246
Query: 168 NAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKI 227
+ G +W + W + + P ++HP + E + + + N AM+ K
Sbjct: 247 YVYGSFGMVWYMFWLLVSYESP-AKHPTIT----DEERRYIEESIGESANLLGAMEKFKT 301
Query: 228 PWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFI 287
PW++ ++PV+AI+V NF + Y+L+ P YFE + ++G +P+L M I
Sbjct: 302 PWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTI 361
Query: 288 FSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALG 347
IGG +AD L +K+ILS T RK +N GF + + L+ + + AI +A+G
Sbjct: 362 IVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAVG 421
Query: 348 FLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSP 407
F +GF VNH+DIAPRYA I+MGISN GTL+G+V + G + + S
Sbjct: 422 FSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKN--------KSR 473
Query: 408 ESWRAVFFIPGLLCILSSFVFLLFSTGER 436
E W+ VF I L+ + LF++GE+
Sbjct: 474 EEWQYVFLIAALVHYGGVIFYALFASGEK 502
|
|
| ZFIN|ZDB-GENE-030616-554 slc17a6b "solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 141/452 (31%), Positives = 231/452 (51%)
Query: 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSK----------------GT 48
P+RY+I I++ + C+ + R +A + + + ++ + K G
Sbjct: 67 PRRYIIAIMSGLGFCISFGIRCNLGVAIVSMVNNSTIHLNGKIIIKEKAKFNWDPETVGL 126
Query: 49 ILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVV-ARLL 107
I +F++GY +Q+PGG+ + ++ +V + +L S+ ++ + V+ R+L
Sbjct: 127 IHGSFFWGYIVTQIPGGYISSRLAANRVFGAAILLTSTLNMFIPSAARGHYGCVIFVRIL 186
Query: 108 VGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167
G+ +G +P+ H + ++W PP ERSR + + G Y GA + M LV+Y G +SVF
Sbjct: 187 QGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGILVQYTGWSSVF 246
Query: 168 NAEAALGGMWSLLWFKYATDPPRSEHPKASAAG---FGESLLPMRDQKVKVDNGGSAMKA 224
G W + W + + P +EHP +A ES+ + K+ G A K
Sbjct: 247 YVYGCFGIFWYMFWILVSYESP-AEHPTITAEERCYIEESI----GESAKLL--GPADKF 299
Query: 225 AKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLN 284
K PW++ ++PV+AI+V NF + Y+L+ P YFE + ++G +P+L
Sbjct: 300 -KTPWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSALPHLV 358
Query: 285 MFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSI 344
M I IGG +ADHL +K ILS T RK +N GF + + L+ + S AI +
Sbjct: 359 MTIIVPIGGQLADHLRSKNILSTTTVRKIMNCGGFGMEATLLLIVGYSHSKGVAISFLVL 418
Query: 345 ALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDL 404
A+GF +GF VNH+DIAPRYA I+MGISN GTL+G+V L+ A T +
Sbjct: 419 AVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVC-----PLIVGAMTKHK-- 471
Query: 405 SSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436
+ E W+ VF I L+ + +F++GE+
Sbjct: 472 -TREEWQYVFLIASLVHYGGVIFYGIFASGEK 502
|
|
| UNIPROTKB|A6QLI1 SLC17A6 "Vesicular glutamate transporter 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 137/449 (30%), Positives = 229/449 (51%)
Query: 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSK---------------GTI 49
P+RY+I I++ + C+ + R +A + + +++ K G I
Sbjct: 68 PRRYIIAIMSGLGFCISFGIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGMI 127
Query: 50 LSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFI--LVVARLL 107
+F++GY +Q+PGG+ A ++ +V + +L +ST L V ++ R+L
Sbjct: 128 HGSFFWGYIITQIPGGYIASRLAANRVF-GAAILLTSTLNMLIPSAARVHYGCVIFVRIL 186
Query: 108 VGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167
G+ +G +P+ H + ++W PP ERSR + + G Y GA + M LV+Y G +SVF
Sbjct: 187 QGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGILVQYTGWSSVF 246
Query: 168 NAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKI 227
+ G +W + W + + P ++HP + E + + + N AM+ K
Sbjct: 247 YVYGSFGMIWYMFWLLVSYESP-AKHPTIT----DEERRYIEESIGESANLLGAMEKFKT 301
Query: 228 PWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFI 287
PW++ ++PV+AI+V NF + Y+L+ P YFE + ++G +P+L M I
Sbjct: 302 PWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTI 361
Query: 288 FSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALG 347
IGG +AD L +K+ILS T RK +N GF + + L+ + + AI +A+G
Sbjct: 362 IVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAVG 421
Query: 348 FLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSP 407
F +GF VNH+DIAPRYA I+MGISN GTL+G+V + G + + S
Sbjct: 422 FSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKN--------KSR 473
Query: 408 ESWRAVFFIPGLLCILSSFVFLLFSTGER 436
E W+ VF I L+ + +F++GE+
Sbjct: 474 EEWQYVFLIAALVHYGGVIFYAIFASGEK 502
|
|
| UNIPROTKB|F1PBW6 SLC17A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 137/449 (30%), Positives = 229/449 (51%)
Query: 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSK---------------GTI 49
P+RY+I I++ + C+ + R +A + + +++ K G I
Sbjct: 69 PRRYIIAIMSGLGFCISFGIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGMI 128
Query: 50 LSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFI--LVVARLL 107
+F++GY +Q+PGG+ A ++ +V + +L +ST L V ++ R+L
Sbjct: 129 HGSFFWGYIITQIPGGYIASRLAANRVF-GAAILLTSTLNMLIPSAARVHYGCVIFVRIL 187
Query: 108 VGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167
G+ +G +P+ H + ++W PP ERSR + + G Y GA + M LV+Y G +SVF
Sbjct: 188 QGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGILVQYTGWSSVF 247
Query: 168 NAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKI 227
+ G +W + W + + P ++HP + E + + + N AM+ K
Sbjct: 248 YVYGSFGMIWYMFWLLVSYESP-AKHPTIT----DEERRYIEESIGESANLLGAMEKFKT 302
Query: 228 PWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFI 287
PW++ ++PV+AI+V NF + Y+L+ P YFE + ++G +P+L M I
Sbjct: 303 PWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTI 362
Query: 288 FSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALG 347
IGG +AD L +K+ILS T RK +N GF + + L+ + + AI +A+G
Sbjct: 363 IVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAVG 422
Query: 348 FLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSP 407
F +GF VNH+DIAPRYA I+MGISN GTL+G+V + G + + S
Sbjct: 423 FSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKN--------KSR 474
Query: 408 ESWRAVFFIPGLLCILSSFVFLLFSTGER 436
E W+ VF I L+ + +F++GE+
Sbjct: 475 EEWQYVFLIAALVHYGGVIFYAIFASGEK 503
|
|
| UNIPROTKB|Q9P2U8 SLC17A6 "Vesicular glutamate transporter 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 137/449 (30%), Positives = 229/449 (51%)
Query: 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSK---------------GTI 49
P+RY+I I++ + C+ + R +A + + +++ K G I
Sbjct: 68 PRRYIIAIMSGLGFCISFGIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGMI 127
Query: 50 LSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFI--LVVARLL 107
+F++GY +Q+PGG+ A ++ +V + +L +ST L V ++ R+L
Sbjct: 128 HGSFFWGYIITQIPGGYIASRLAANRVF-GAAILLTSTLNMLIPSAARVHYGCVIFVRIL 186
Query: 108 VGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167
G+ +G +P+ H + ++W PP ERSR + + G Y GA + M LV+Y G +SVF
Sbjct: 187 QGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGILVQYTGWSSVF 246
Query: 168 NAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKI 227
+ G +W + W + + P ++HP + E + + + N AM+ K
Sbjct: 247 YVYGSFGMVWYMFWLLVSYESP-AKHPTIT----DEERRYIEESIGESANLLGAMEKFKT 301
Query: 228 PWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFI 287
PW++ ++PV+AI+V NF + Y+L+ P YFE + ++G +P+L M I
Sbjct: 302 PWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTI 361
Query: 288 FSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALG 347
IGG +AD L +K+ILS T RK +N GF + + L+ + + AI +A+G
Sbjct: 362 IVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAVG 421
Query: 348 FLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSP 407
F +GF VNH+DIAPRYA I+MGISN GTL+G+V + G + + S
Sbjct: 422 FSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKN--------KSR 473
Query: 408 ESWRAVFFIPGLLCILSSFVFLLFSTGER 436
E W+ VF I L+ + +F++GE+
Sbjct: 474 EEWQYVFLIAALVHYGGVIFYAIFASGEK 502
|
|
| UNIPROTKB|F1SFZ2 SLC17A6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 137/449 (30%), Positives = 229/449 (51%)
Query: 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSK---------------GTI 49
P+RY+I I++ + C+ + R +A + + +++ K G I
Sbjct: 68 PRRYIIAIMSGLGFCISFGIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGMI 127
Query: 50 LSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFI--LVVARLL 107
+F++GY +Q+PGG+ A ++ +V + +L +ST L V ++ R+L
Sbjct: 128 HGSFFWGYIITQIPGGYIASRLAANRVF-GAAILLTSTLNMLIPSAARVHYGCVIFVRIL 186
Query: 108 VGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167
G+ +G +P+ H + ++W PP ERSR + + G Y GA + M LV+Y G +SVF
Sbjct: 187 QGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGILVQYTGWSSVF 246
Query: 168 NAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKI 227
+ G +W + W + + P ++HP + E + + + N AM+ K
Sbjct: 247 YVYGSFGMIWYMFWLLVSYESP-AKHPTIT----DEERRYIEESIGESANLLGAMEKFKT 301
Query: 228 PWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFI 287
PW++ ++PV+AI+V NF + Y+L+ P YFE + ++G +P+L M I
Sbjct: 302 PWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTI 361
Query: 288 FSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALG 347
IGG +AD L +K+ILS T RK +N GF + + L+ + + AI +A+G
Sbjct: 362 IVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAVG 421
Query: 348 FLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSP 407
F +GF VNH+DIAPRYA I+MGISN GTL+G+V + G + + S
Sbjct: 422 FSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKN--------KSR 473
Query: 408 ESWRAVFFIPGLLCILSSFVFLLFSTGER 436
E W+ VF I L+ + +F++GE+
Sbjct: 474 EEWQYVFLIAALVHYGGVIFYAIFASGEK 502
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q2QWW7 | PHT47_ORYSJ | No assigned EC number | 0.7038 | 0.9840 | 0.9840 | yes | no |
| Q53P54 | PHT46_ORYSJ | No assigned EC number | 0.7266 | 0.9726 | 0.9976 | no | no |
| Q9FKV1 | ANTR5_ARATH | No assigned EC number | 0.7986 | 0.9749 | 0.9907 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 439 | |||
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 2e-49 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 5e-34 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-27 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-23 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 7e-21 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 1e-10 | |
| TIGR02332 | 412 | TIGR02332, HpaX, 4-hydroxyphenylacetate permease | 4e-08 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-07 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 1e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 5e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.003 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 2e-49
Identities = 116/396 (29%), Positives = 179/396 (45%), Gaps = 26/396 (6%)
Query: 47 GTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVA-R 105
G ILS+ +YG Q+P G+ A K + + L S + LVV R
Sbjct: 79 GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCR 138
Query: 106 LLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN-GPN 164
++ G++QG + P+ H ++ +W PP ERSR + ++TSG LG + + L + G
Sbjct: 139 VIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWP 198
Query: 165 SVFNAEAALGGMWSLLWFKYATDPPRSEHPKASA---AGFGESLLPMRDQKVKVDNGGSA 221
+F +G WSLLWF + D P HP S SL G
Sbjct: 199 MIFYVFGIVGCAWSLLWFVFPADDPS-IHPCISKFEKKYINSSLQ-----------GQKG 246
Query: 222 MKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMP 281
+P K I +LPVWAI F + +L +LPT+ L++S +E G +P
Sbjct: 247 STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLP 306
Query: 282 YLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSN-GAIF 340
YL ++ S G +AD L + + LS+T RK N +G + I ALP ++ I
Sbjct: 307 YLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTII 366
Query: 341 CSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTT 400
++A + AG +N +D+APR+ G + GI+ G + G++ + G +L
Sbjct: 367 ILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILS----- 421
Query: 401 YSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436
S W VF I + IL +L+F + ER
Sbjct: 422 ---QDSKNVWLIVFLIMAFVNILCVIFYLIFGSAER 454
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 5e-34
Identities = 108/423 (25%), Positives = 179/423 (42%), Gaps = 32/423 (7%)
Query: 16 ISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRK 75
+ T + Y++R S A + G++ + G + S F +GY Q PGGW + G RK
Sbjct: 1 LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60
Query: 76 VLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRS 135
L V+W L + R+L+G ++ FP I ++A W P ER+ +
Sbjct: 61 TLAVFIVIWGVFTGLQAF-AGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119
Query: 136 VSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPK 195
VS+ S LG +G + ++ + F E LG +W +LW K+ DPP + K
Sbjct: 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP--QKAK 177
Query: 196 ASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPW-------KRIVVNLPVWAIVVNNFTF 248
++K V G A + K P K ++ + VW + + F
Sbjct: 178 WLTE----------EEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLV 227
Query: 249 HYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVT 308
+ L + W PTY LS+ E G +P + FI +GG ++D L+ +R S+
Sbjct: 228 NIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSD-LLLRRGKSLV 286
Query: 309 RTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYA 368
RK + +V S+ + A A+ ++ L G G+A+ + A
Sbjct: 287 FARKTA-IIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIA 345
Query: 369 GIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVF 428
G+ G+ N+ G L GIVG + G + A TT S+ + L ++ + +
Sbjct: 346 GLTGGLINSLGNLGGIVGPIVIGAI---AATTG-------SFAGALMVVAALALIGALSY 395
Query: 429 LLF 431
LL
Sbjct: 396 LLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-27
Identities = 93/375 (24%), Positives = 162/375 (43%), Gaps = 32/375 (8%)
Query: 14 TFISTCVCYIERVGFSIAYTAA-ADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIG 72
F++ + + R A A+ G++ + G +L+ F GYA +Q G + + G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 73 GRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHER 132
R+VLL +L++ L L +++++L+V R+L G+ G +FP+ ++A W PP ER
Sbjct: 61 RRRVLLIGLLLFALGLLLL-LFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119
Query: 133 SRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSE 192
R++ L ++G LGAA+G L L G + F A L + ++L PP
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPES 179
Query: 193 HPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYAL 252
A L +P ++++ PV +++ F +A
Sbjct: 180 KRPKPAEEAPAPL---------------------VPAWKLLLRDPVLWLLLALLLFGFAF 218
Query: 253 YVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRK 312
+ L+ +LP Y E+ L LS G + L I + G ++D L +R L +
Sbjct: 219 FALLTYLPLYQEV-LGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLA---- 273
Query: 313 FLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIV 371
+ ++A++ L L + SS + + L D+AP G
Sbjct: 274 ---LLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTA 330
Query: 372 MGISNTAGTLAGIVG 386
G+ NTAG+L G +G
Sbjct: 331 SGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 96/422 (22%), Positives = 174/422 (41%), Gaps = 72/422 (17%)
Query: 11 VILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQK 70
++L F+ + ++R S A A+ G++ S G I+S F GYA + G+ + +
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 71 IGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPH 130
G R+VLL +L++ L +++++L+V R L+G+ G ++P+ ++A+W PP
Sbjct: 61 FGRRRVLLLGLLLFALGSLLL-AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119
Query: 131 ERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPR 190
ER R++ L ++G LGA +G L L + G +F A LG + +LL
Sbjct: 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL-------- 171
Query: 191 SEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHY 250
+ + + + F +
Sbjct: 172 ------------------------------------------FLLRLLLLLALAFFLLSF 189
Query: 251 ALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRT 310
Y L+ +LP Y + L LS E G + L + + +GG+++D L
Sbjct: 190 GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL---------GR 240
Query: 311 RKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAG 369
R+ L +G ++A++ L+ L + S + + L ++AP G
Sbjct: 241 RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARG 300
Query: 370 IVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFL 429
G+ NT G+L G +G + G LL+ + VF I L +L++ + L
Sbjct: 301 TASGLFNTFGSLGGALGPLLAGLLLDTG-----------GYGGVFLILAALALLAALLLL 349
Query: 430 LF 431
L
Sbjct: 350 LL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 7e-21
Identities = 74/385 (19%), Positives = 141/385 (36%), Gaps = 18/385 (4%)
Query: 15 FISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGR 74
FI Y+ R F++A + G++++ G +LS+F Y S+ G + + R
Sbjct: 1 FIGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR 60
Query: 75 KVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSR 134
L +L + + + ++++ L G+ QG +P + +W ER
Sbjct: 61 VFLPIGLILCAIVNLFFGFSTS-LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGT 119
Query: 135 SVSLTTSGMYLGAAMG-MLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEH 193
VS +G + L L + + + VF + + SL+ F D P+S
Sbjct: 120 WVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCG 179
Query: 194 -PKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYAL 252
P A +P + + + +I + +++N +W I + +
Sbjct: 180 LPPA-------EEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVR 232
Query: 253 YVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRK 312
+++W P Y S ++ + + L + + + G ++D L R +
Sbjct: 233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFM 292
Query: 313 FLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAG-FAVNHMDIAP-RYAGI 370
L V + L ++ ALGFL G V ++AP + AG
Sbjct: 293 ALIIVS--LLVYWLNP----AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGT 346
Query: 371 VMGISNTAGTLAGIVGVDMTGKLLE 395
G L GI+ G L +
Sbjct: 347 AAGFVGFFAYLGGILAGLPLGYLAD 371
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 95/444 (21%), Positives = 168/444 (37%), Gaps = 42/444 (9%)
Query: 6 KRYLIVIL--TFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVP 63
KR+ I I FI Y+ R F++A A + G++++ G + S F Y S+
Sbjct: 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFV 83
Query: 64 GGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVL 123
G + + R + F +L + P ++F+ V +L G QG +P +
Sbjct: 84 MGVLSDRSNPRYFMAFGLILSAIVNILFGFSP-SLFLFAVLWVLNGWFQGMGWPPCARTI 142
Query: 124 AQWVPPHERSRSVSLTTSGMYLGAAMGMLF--LPSLVKYNGPNSVFNAEAALGGMWSLLW 181
W ER S+ + +G A+ L L + G + F + + +L+
Sbjct: 143 THWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALIL 202
Query: 182 FKYATDPPRSE-HPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWA 240
D P+SE P G+ L ++K + A +I K ++ N +W
Sbjct: 203 LFLLRDRPQSEGLPPIEEY-RGDPLEIYEEEK-----ENEGLTAWQIFVKYVLKNKLIWL 256
Query: 241 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300
+ + N + Y + +W P Y SL + + + + + + G ++D L
Sbjct: 257 LALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLF 316
Query: 301 TKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIAL---GFLALGR---A 354
R R + + FM+ A + L + + NG+ +I L GFL G
Sbjct: 317 KGR-------RGPMA-LIFMLLITASLVL-YWLAPNGSYLLDAILLFIIGFLIYGPQMLI 367
Query: 355 GFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTY--SDLSSPESWRA 412
G A + P+ A AGT G VG+ L+ AA ++ W
Sbjct: 368 GLAA--AEFVPKKA---------AGTATGFVGL--FAYLIGAALAGLPLGYIADTWGWDG 414
Query: 413 VFFIPGLLCILSSFVFLLFSTGER 436
F + + +L+ + L E
Sbjct: 415 GFIVLSIAALLAILLLLPVWNAEE 438
|
Length = 448 |
| >gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 4e-08
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Query: 7 RYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGW 66
R LI+ L FI +++R+ A G++ + G + FY Y +P
Sbjct: 7 RRLIIFL-FILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNI 65
Query: 67 AAQKIGGRKVLLFSFVLW--SSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLA 124
IG R+ + VLW +ST P ++++L R+LVG+++ P I L
Sbjct: 66 MLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLL---RILVGIAEAGFLPGILLYLT 122
Query: 125 QWVPPHERSRSVSLTTSGMYLGAAMGML 152
W P + R+R+ +L M + A+G++
Sbjct: 123 FWFPAYFRARANALFMIAMPVTMALGLI 150
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 76/336 (22%), Positives = 125/336 (37%), Gaps = 18/336 (5%)
Query: 9 LIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAA 68
+IL+F+ + + A A + G++ G + S G A + G A
Sbjct: 17 RAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLA 76
Query: 69 QKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVP 128
+IG R+VLL+S +L+S L NV L++ R L G+ G + P+++ +++++ P
Sbjct: 77 DRIGRRRVLLWSILLFS-VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAP 135
Query: 129 PHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWS--LLWFKYAT 186
R +V L G +GAA+G L+ G S+F +GG+ LL
Sbjct: 136 KRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLF----YVGGIAPLLLLLLLMRF 191
Query: 187 DPPRSEHP-KASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVV--------NLP 237
P + + + Q + A KR V
Sbjct: 192 LPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARI 251
Query: 238 VWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVAD 297
+ + F +Y L NWLP + L SL + + I S I G +AD
Sbjct: 252 TVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLAD 310
Query: 298 HLITKRILSVTR-TRKFLNTVGFMVASIALMALPIF 332
L + + F VG + S L+ L
Sbjct: 311 RLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGA 346
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 45/174 (25%), Positives = 81/174 (46%)
Query: 9 LIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAA 68
L+++L + + + + G++ + G +LS F G + GG +
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 69 QKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVP 128
++G R++LL +L ++ L ++ +L+VA LL+G GF FP++ T+ ++ P
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAP 295
Query: 129 PHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182
P R + L + LG A+G L L+ G VF AAL + +LL
Sbjct: 296 PEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 73/312 (23%), Positives = 109/312 (34%), Gaps = 82/312 (26%)
Query: 64 GGWAAQKIGGRKVLLFSFVLWS----STCFWLKLDPNNVFILVVARLLVGVSQGFIFPSI 119
GG A +IG +++L+ S L+ +T L+VARLL GV G P++
Sbjct: 70 GGRLADRIGRKRILIVSVALFGLFSLATAQAWDFP-----SLLVARLLTGVGLGGALPNL 124
Query: 120 HTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAA------- 172
+ ++ V P R +VSL G+ G A L S++ V A A
Sbjct: 125 IALTSEAVGPRLRGTAVSLMYCGVPFGGA-----LASVI------GVLAAGDAAWRHIFY 173
Query: 173 LGGMWSLL-------WFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAA 225
+GG+ LL W + ++ A +L G A
Sbjct: 174 VGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALF----------GEGRATATL 223
Query: 226 KIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNM 285
+ W L V LY L+NWLP L G S+ L
Sbjct: 224 LL-WISYFFTLIV-------------LYFLLNWLP--------SLLVGQGLSRSQAGLVQ 261
Query: 286 FIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIA 345
F NIGG + L+ ++ R R+ V + A I ++ + A
Sbjct: 262 IAF-NIGGALGS-LLIGALMDRLRPRR---VVLLIYAGILA-----------SLAALAAA 305
Query: 346 LGFLALGRAGFA 357
F + AGFA
Sbjct: 306 PSFAGMLLAGFA 317
|
Length = 406 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 82/418 (19%), Positives = 152/418 (36%), Gaps = 78/418 (18%)
Query: 33 TAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLK 92
A GV++ + G +++ + G A ++ R++LL L+ +
Sbjct: 37 PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSA 96
Query: 93 LDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMY-------- 144
L P+ +L++AR L G++ G + + A+ VPP +R R+++L +G+
Sbjct: 97 LAPS-FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVP 155
Query: 145 LGAAMGMLFLPSLVKYNGPNSVFNAEAALG-----GMWSLLWFKYATDPPRSEHPKASAA 199
LG +G LF G + F A A L +W LL P SE +
Sbjct: 156 LGTFLGQLF--------GWRATFLAIAVLALLALLLLWKLL--------PPSEISGSLPG 199
Query: 200 GFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWL 259
L +R V L T H+ALY ++
Sbjct: 200 PLRTLLRLLRRPGV----------------------LLGLLATFLFMTGHFALYT---YI 234
Query: 260 PTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGF 319
+ E S+ + + + FI + +GG +AD + ++
Sbjct: 235 RPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALI-----------AAL 283
Query: 320 MVASIALMALPIFRSSNGAIFCSSIALGF-LALGRAGFAVNHMDIAPRYAGIVMGISNTA 378
++ ++AL+AL +S GF + G +AP A + ++ A
Sbjct: 284 LLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAA 343
Query: 379 GTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436
L +G + G +L+A + A ++ L +L+ + LL + +R
Sbjct: 344 FNLGIALGAALGGLVLDAL-----------GYAATGWVGAALLLLALLLALLSARKDR 390
|
Length = 394 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 51 STFYYGYACSQV----PGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARL 106
GYA Q+ G + G + VLL ++ + L +N+ +L++AR
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL-SSNITVLIIARF 59
Query: 107 LVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLF 153
L G F + ++A PP ER ++ L ++G+ LG +G
Sbjct: 60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPL 106
|
Length = 141 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 7/151 (4%)
Query: 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVP 63
L ++L + + + G++ G +L A ++
Sbjct: 200 LRDPVLWLLLALLLFGFAF---FALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLL 256
Query: 64 GGWAAQKIGGRK---VLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIH 120
G + ++G R+ + L +L + L L +++++LV LL+G G +FP+++
Sbjct: 257 LGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVAL-LLLGFGAGLVFPALN 315
Query: 121 TVLAQWVPPHERSRSVSLTTSGMYLGAAMGM 151
+++ P ER + L + LG A+G
Sbjct: 316 ALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 439 | |||
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 100.0 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 100.0 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 100.0 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 100.0 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 100.0 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 100.0 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.98 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.98 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.98 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.98 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.97 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.97 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.97 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.97 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.97 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.97 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.97 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.97 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.97 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.96 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.96 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.96 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.96 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.96 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.96 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.95 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.94 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.94 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.94 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.93 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.92 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.92 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.92 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.91 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.91 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.91 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.91 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.87 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.87 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.86 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.84 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.82 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.81 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.79 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.77 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.75 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.68 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.68 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.65 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.64 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.64 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.64 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.59 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.57 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.56 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.56 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.55 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.55 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.55 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.55 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.54 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.53 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.52 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.52 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.51 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.5 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.5 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.49 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.48 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.47 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.47 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.46 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.46 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.46 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.46 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.45 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.44 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.44 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.44 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.42 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.42 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.42 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.42 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.41 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.41 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.41 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.41 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.4 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.39 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.39 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.38 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.38 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.38 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.37 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.37 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.36 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.36 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.36 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.35 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.35 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.34 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.34 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.34 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.34 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.34 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.33 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.33 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.32 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.32 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.31 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.31 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.31 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.31 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.3 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.3 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.28 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.28 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.28 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.27 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.26 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.25 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.24 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.24 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.22 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.21 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.2 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.19 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.18 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.18 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.18 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.17 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.15 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.14 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.14 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.14 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.14 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.13 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.13 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.12 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.11 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.11 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.09 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.07 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.07 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.07 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 99.04 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.04 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.0 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.99 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.99 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.98 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.98 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.98 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.95 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.95 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.91 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.9 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.89 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.87 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.85 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.84 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.84 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.82 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.8 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.78 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.77 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.76 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.76 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.73 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.71 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.71 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.67 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.57 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.54 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.49 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.48 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.48 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.45 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.43 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.42 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.33 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.32 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.31 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.3 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.3 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.23 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.14 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.03 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.99 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.96 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.92 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.9 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.78 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.72 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.71 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.64 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.44 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.28 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.19 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.02 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.98 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.78 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.66 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.51 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.37 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 96.23 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.13 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.12 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.07 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.01 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.57 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.47 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.41 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.38 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.76 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.68 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 91.57 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 91.34 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 91.1 | |
| PF07857 | 254 | DUF1632: CEO family (DUF1632); InterPro: IPR012435 | 91.1 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 89.13 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 85.68 | |
| PF02990 | 521 | EMP70: Endomembrane protein 70; InterPro: IPR00424 | 80.64 |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=320.34 Aligned_cols=383 Identities=20% Similarity=0.266 Sum_probs=330.0
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVL 83 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 83 (439)
++..+..+..+.++.|............+|++.+|+|+|..+.|+..|.|.+++.++.|+...+.||+.||++++..+.+
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l 87 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC
Q 013609 84 WSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 163 (439)
+.++++++++++ ||+.++++|++.|+..|.+++...++..|..|++||++++++...+.+++.++|.+++.++.|.+||
T Consensus 88 Fi~~n~l~alAp-~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW 166 (394)
T COG2814 88 FIVSNLLSALAP-SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW 166 (394)
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence 999999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHH
Q 013609 164 NSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVV 243 (439)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (439)
|..|++.+.++++..+..+...| |++..+ +.+.+..+..+++|+|+++...+
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~~~--------------------------~~~~~~~~~~~~l~~p~v~~~l~ 218 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP--PSEISG--------------------------SLPGPLRTLLRLLRRPGVLLGLL 218 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CccCCC--------------------------CCCcchhHHHHHhcCchHHHHHH
Confidence 99999999999998888888887 222211 11222233468999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHH
Q 013609 244 NNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVAS 323 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..++...+.+...+|+..++++..|+|++..++....++++.++|+.++|++.|| +.++ .+.....+.+
T Consensus 219 ~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~----------~l~~~~~l~a 287 (394)
T COG2814 219 ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR----------ALIAALLLLA 287 (394)
T ss_pred HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh----------HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 7776 6666666666
Q ss_pred HHHhhhcccCChhHHHHHHHHHHHhhh-cccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccccc
Q 013609 324 IALMALPIFRSSNGAIFCSSIALGFLA-LGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYS 402 (439)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~ 402 (439)
+.++.+.+..+............++.. ...........+..|+.+..+.+++....|+|..+|..+.|.+.|+.
T Consensus 288 ~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~----- 362 (394)
T COG2814 288 LALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL----- 362 (394)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 666666665544433333222233222 22223334444566799999999999999999999999999999998
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 013609 403 DLSSPESWRAVFFIPGLLCILSSFVFLLFSTGERI 437 (439)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (439)
++....++.+.+.+++.++.+...+.+|.
T Consensus 363 ------g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 363 ------GYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999998888776655443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=318.77 Aligned_cols=404 Identities=19% Similarity=0.274 Sum_probs=335.4
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
+.|+.++..+++++...++.+..++.+.|.+.+|.++|.+|.|.+.+.+++.|.++..+.|.++||.+.|+.+..++++.
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhh--hhhhcccC
Q 013609 85 SSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFL--PSLVKYNG 162 (439)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~~ 162 (439)
++.++++++++ +.+.+.+..+++|..+|...|.+...++.|+|++|||+..++++.+.++|..+.|++. +.+..+.+
T Consensus 105 ai~nil~Gfs~-s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~ 183 (448)
T COG2271 105 AIVNILFGFSP-SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG 183 (448)
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc
Confidence 99999999997 9999999999999999999999999999999999999999999999999999999999 88888889
Q ss_pred CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhcccccc-ccccCchHHhhhcchhHHHH
Q 013609 163 PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSA-MKAAKIPWKRIVVNLPVWAI 241 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 241 (439)
||..|++.++++++..+..++..+|+|++.....-++...+.. +..+ ++++.+ ......-.+.+++||.+|.+
T Consensus 184 w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~-e~~~-----~~~~~~~ls~~~i~~~YVL~Nk~iW~l 257 (448)
T COG2271 184 WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPL-EIYE-----EEKENEGLTAWQIFVKYVLKNKLIWLL 257 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCch-hhhh-----hhccCCCccHHHHHHHHHHcChHHHHH
Confidence 9999999999999999999999999998753221111111000 0000 000011 11122344667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHH
Q 013609 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMV 321 (439)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 321 (439)
++..++.+..-+++..|.|.|+.|+.|+|..+++...+.+-.++++|.++.|+++||+.+.+ |.+...+..+.
T Consensus 258 a~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr-------R~p~~~i~~~~ 330 (448)
T COG2271 258 ALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR-------RGPMALIFMLL 330 (448)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc-------cchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987544 34566666666
Q ss_pred HHHHHhhhcccCCh-hHHHHHHHHHHHhhhccccc-ccccccccCC-ChhhHHHHHHHHHhhh-hHHHHHHHHHHhhccc
Q 013609 322 ASIALMALPIFRSS-NGAIFCSSIALGFLALGRAG-FAVNHMDIAP-RYAGIVMGISNTAGTL-AGIVGVDMTGKLLEAA 397 (439)
Q Consensus 322 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~-g~~i~~~~~g~l~~~~ 397 (439)
..+++..+...++. ......++...|+....+.. ......|+.| +..|++.|+...+.++ |.+.+....|++.|..
T Consensus 331 i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~ 410 (448)
T COG2271 331 ITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW 410 (448)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC
Confidence 66777666666544 33444444455555444432 2344556666 6799999999999999 8889999999999987
Q ss_pred cccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 398 KTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
+|...|++..+.++++.++.+...+
T Consensus 411 -----------gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 411 -----------GWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHHHHh
Confidence 8999999988888887777666544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=323.90 Aligned_cols=378 Identities=13% Similarity=0.104 Sum_probs=300.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHH
Q 013609 3 NFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFV 82 (439)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 82 (439)
+++++|..+..+.++.+....+.....+.+|.+.+|+|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 82 (390)
T PRK03545 3 SRKVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV 82 (390)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 34556766666666666655555566677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC
Q 013609 83 LWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG 162 (439)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 162 (439)
+.+++++.+++++ |++.+++.|+++|++.+...+...+++.|++|+|+|++++++...+.++|..++|++++.+.++.|
T Consensus 83 ~~~~~~~~~~~~~-~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g 161 (390)
T PRK03545 83 LFIASHVLSALAW-NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG 161 (390)
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 9999999999997 999999999999999998889999999999999999999999999999999999999999999899
Q ss_pred CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHH
Q 013609 163 PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (439)
||+.|++.++++++..+..+...||+|++++ +...+.++.+|+|.++...
T Consensus 162 w~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 211 (390)
T PRK03545 162 WRTTFLAIGGGALITLLLLIKLLPLLPSEHS------------------------------GSLKSLPLLFRRPALVSLY 211 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc------------------------------chHHHHHHHHhCcHHHHHH
Confidence 9999999998887766665555555432110 0112346788999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHH
Q 013609 243 VNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVA 322 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (439)
...++..........+.+.++++..|.++.+.+.+.....++.++++.+.+++.||.++|. ... +..+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~----------~~~-~~~~~ 280 (390)
T PRK03545 212 LLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF----------LLI-AIALL 280 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH----------HHH-HHHHH
Confidence 6666666666667788888888878999999999999999999999999999999988665 333 33333
Q ss_pred HHHHh-hhcccCChhHHHHH-HHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccc
Q 013609 323 SIALM-ALPIFRSSNGAIFC-SSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTT 400 (439)
Q Consensus 323 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~ 400 (439)
..... .....++....... .+.+.+. ....+.......+..|+++++++|+.+...++|..+||.+.|.+.|..
T Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~--- 356 (390)
T PRK03545 281 LVCLLLLLPAANSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHL--- 356 (390)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 33332 22333333332222 2223332 222233344455667789999999999999999999999999999998
Q ss_pred ccCCCCcccchhHHHHHHHHHHHHHHHHHHhccC
Q 013609 401 YSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
+++..+.+.+.+.+++.+......|+
T Consensus 357 --------g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
T PRK03545 357 --------GLSSIGYVGAALALAALVWSILIFRR 382 (390)
T ss_pred --------ChhHHHHHHHHHHHHHHHHHHHHccc
Confidence 89999999999988888877766553
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=328.30 Aligned_cols=396 Identities=15% Similarity=0.212 Sum_probs=295.6
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
|.+|..+..+++.++++++|+...+...|.+.+|+|+++++.|++.+++.+++.+++++.|+++||+|||+++..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc-----
Q 013609 85 SSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK----- 159 (439)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----- 159 (439)
++++.++++++ |++.+++.|+++|++.+...|....++.|++|+++|++++++++.+.++|..+++.+++.+.+
T Consensus 84 ~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (412)
T TIGR02332 84 GIASTATMFAT-GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM 162 (412)
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999997 999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcc-cccCccCcccchhhh-hccc-cccccccCchHHhhhcc
Q 013609 160 -YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAA-GFGESLLPMRDQKVK-VDNG-GSAMKAAKIPWKRIVVN 235 (439)
Q Consensus 160 -~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 235 (439)
..|||+.|++.++++++..++.+++.||+|++.+...+++ +..++..+..+...+ .+.. +++..+....+++++ +
T Consensus 163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 241 (412)
T TIGR02332 163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-T 241 (412)
T ss_pred CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-C
Confidence 4699999999988888776767777788876532100000 000000000000000 0000 000001112334444 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHH
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELG-LQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFL 314 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 314 (439)
|.+|...+..++.....+.+..|+|.++++. .|+++.+++.......++.+++.++.|+++||+++|+ ..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~---------~~ 312 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK---------HH 312 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH---------HH
Confidence 8888888888888888999999999999872 4678888898899999999999999999999998776 11
Q ss_pred HHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhc-ccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHH
Q 013609 315 NTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLAL-GRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGK 392 (439)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 392 (439)
......+..+........++........+. .+++.. ..+.......+ .++|+|+++.|+.+...++|++++|.+.|.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~ 391 (412)
T TIGR02332 313 TALPYLFAAAGWLLASATDHNLIQLLGIIM-ASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGI 391 (412)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 222223333333222222222222211111 111111 11222233334 456899999999999999999999999999
Q ss_pred hhccccccccCCCCcccchhHHHHHHHHHH
Q 013609 393 LLEAAKTTYSDLSSPESWRAVFFIPGLLCI 422 (439)
Q Consensus 393 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (439)
+.|.. ++|+..+.+.+++.+
T Consensus 392 i~~~~----------g~~~~~~~~~~~~~~ 411 (412)
T TIGR02332 392 LKDAT----------GSFNSGLWFVAALLV 411 (412)
T ss_pred ccccC----------CCCchhHHHHHHHHh
Confidence 99987 479998887766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=327.54 Aligned_cols=408 Identities=16% Similarity=0.152 Sum_probs=297.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHH
Q 013609 7 RYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSS 86 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 86 (439)
.+.++..+++++++.+.++..+++..|.+.+|+|++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 45567788888999999999999999999999999999999999999999999999999999999999999888877777
Q ss_pred HHhhhcC-----CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhccc
Q 013609 87 TCFWLKL-----DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN 161 (439)
Q Consensus 87 ~~~~~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 161 (439)
+..+.++ ++ |++.+++.|+++|++.+...|...++++||+|+++|++++|+...+.++|.++++.+...+.+..
T Consensus 107 ~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~ 185 (467)
T PRK09556 107 CMLGFGASLGSGSV-SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF 185 (467)
T ss_pred HHHHHHHHHhcccc-hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence 6655544 66 99999999999999999999999999999999999999999999999999999999887766643
Q ss_pred ---CCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCch-HHhhhcchh
Q 013609 162 ---GPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIP-WKRIVVNLP 237 (439)
Q Consensus 162 ---~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 237 (439)
+||..|.+.+++.++..++.+++.+|+|++.....+ ++..++..+. ++ ...++++.+..+. .++.+|+|.
T Consensus 186 ~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~-~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~l~~~~ 259 (467)
T PRK09556 186 FDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA-EEIFGEPISE-ED----KETESTDMTKWQIFVEYVLKNPV 259 (467)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh-hhcccCccch-hh----hccccccCcHHHHHHHHHHcChH
Confidence 699999988888887777666676776654322111 1100000000 00 0000000011111 234789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHH
Q 013609 238 VWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTV 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 317 (439)
+|...+..++.+....+...|.|.|+++.+|+|..+++.......++.+++.++.|+++||+++|+ ....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~----------~~~~ 329 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR----------ALVA 329 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc----------hHHH
Confidence 999999999988888889999999999889999999999888899999999999999999999887 3333
Q ss_pred HHHHHHHH--HhhhcccCChhHHHHHHHHHHHhhhcccc-c-ccccccccCCChhhHHHHHHHHHhhh-hHHHHHHHHHH
Q 013609 318 GFMVASIA--LMALPIFRSSNGAIFCSSIALGFLALGRA-G-FAVNHMDIAPRYAGIVMGISNTAGTL-AGIVGVDMTGK 392 (439)
Q Consensus 318 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~i~~~~~g~ 392 (439)
........ .+.+...++.... ....+..++....+. . .....+..|++++|++.|+.+...++ |++++|.+.|.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~ 408 (467)
T PRK09556 330 CIALALIIFTLGVYQHATSEYMY-LASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGM 408 (467)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence 22222222 1222222233222 222222222211111 1 12223344557999999999999997 77999999999
Q ss_pred hhccccccc-cCCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 393 LLEAAKTTY-SDLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 393 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
+.|....+. ...+...+|+..|.+..++.+++.+..+.+.
T Consensus 409 i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 409 IADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred HhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999211000 0000123699999999888888877766553
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=320.61 Aligned_cols=407 Identities=17% Similarity=0.228 Sum_probs=303.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWS 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 85 (439)
.++.+.....+++++.+++...+++..|.+.+++|.|+++.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 35566777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCch
Q 013609 86 STCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNS 165 (439)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~ 165 (439)
++.+++++++ |++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|..+++.+.+.+.+.+|||+
T Consensus 100 ~~~~~~~~~~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 178 (434)
T PRK11663 100 IINILFGFSS-SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY 178 (434)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 9999999997 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchH-HhhhcchhHHHHHHH
Q 013609 166 VFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPW-KRIVVNLPVWAIVVN 244 (439)
Q Consensus 166 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 244 (439)
.|++.+++.++..+...+..||+|++...+...++..+.. +..+ +. +++..+.++.+ ...+++|.+|...+.
T Consensus 179 ~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (434)
T PRK11663 179 GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDAL-ELAQ----QQ--EGAGLSRKEILTKYVLLNPYIWLLSFS 251 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccccc-ccch----hc--cccCCChhhhHHHHHhcChHHHHHHHH
Confidence 9999888777665555556677665432111110000000 0000 00 00000111111 236778999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHH
Q 013609 245 NFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASI 324 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++.......+..|+|.|+++.+|++..+++...+...++..+++++.|+++||+.+++.. ........+......
T Consensus 252 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~----~~~~~~~~~~~~~~~ 327 (434)
T PRK11663 252 YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRG----PMNLIFAAGILLSVG 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcc----HHHHHHHHHHHHHHH
Confidence 8888888888889999999887899999999999999999999999999999999433200 000111222222222
Q ss_pred HHhhhcccCChhHHHHHHHHHHHhhhccc-ccccccccccC-CChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccccc
Q 013609 325 ALMALPIFRSSNGAIFCSSIALGFLALGR-AGFAVNHMDIA-PRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYS 402 (439)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~ 402 (439)
....... .+. .......+..++....+ ........+.. +++|+++.|+.+...++|++++|.+.|++.|..
T Consensus 328 ~~~~~~~-~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~----- 400 (434)
T PRK11663 328 SLWLMPF-ASY-VMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW----- 400 (434)
T ss_pred HHHHccc-ccH-HHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc-----
Confidence 2222222 122 12222222233222211 11223344544 579999999999999999999999999999988
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 013609 403 DLSSPESWRAVFFIPGLLCILSSFVFLLFSTGERI 437 (439)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (439)
+|+.+|.+.+++.+++.+..+...|+++.
T Consensus 401 ------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (434)
T PRK11663 401 ------HWTGFFVVISIAAGISALLLLPFLNAQAP 429 (434)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 79999999988888877766665555443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=325.85 Aligned_cols=415 Identities=27% Similarity=0.460 Sum_probs=321.3
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH----------------------hhCCCccchhhhhhhhhhhhhhhc
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAAD----------------------AAGVNQSSKGTILSTFYYGYACSQ 61 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~g~~~s~~~~~~~~~~ 61 (439)
.+.||.+...++++..+++.|+...+...+.+.+ |++++..+.|++.+.+.+++.+++
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999888876 789999999999999999999999
Q ss_pred ccccccccccCchHHHHHHHHHHHHHHhhhcCCc-chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHh
Q 013609 62 VPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDP-NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTT 140 (439)
Q Consensus 62 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 140 (439)
++.|+++||+|||+++..+.++++++.+++.++. .+++.+++.|+++|++.+...+....+++|++|+++|++++++..
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999988875442 268889999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhhhhhhhcc-cCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhcccc
Q 013609 141 SGMYLGAAMGMLFLPSLVKY-NGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGG 219 (439)
Q Consensus 141 ~~~~~g~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (439)
.+..+|..+++++++.+.+. .+||+.|++.++++++..++++...+|+|+++++..+ +|.... ++ ..+++
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~i-----~~---~~~~~ 244 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISK-FEKKYI-----NS---SLQGQ 244 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCH-HHHHHH-----Hh---hcccc
Confidence 99999999999999999988 4999999999998888777777777777754322111 110000 00 00000
Q ss_pred ccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHh
Q 013609 220 SAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHL 299 (439)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 299 (439)
++.++.+.++++++++|.+|...+..++.....+.+..|+|.|+++.+|++..+.++......++..++.++.|+++||.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~ 324 (465)
T TIGR00894 245 KGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL 324 (465)
T ss_pred cCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112234688999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHHHHHHHHHHhhhcc-cCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHH
Q 013609 300 ITKRILSVTRTRKFLNTVGFMVASIALMALPI-FRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTA 378 (439)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 378 (439)
++|+.......++.....+..+.++..+.... ..+....+....+..++.+...+.......+..|+.+|.+.|+.+..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 404 (465)
T TIGR00894 325 KSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLP 404 (465)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHH
Confidence 87764333333333333333333332222222 22233333333333333333333444455677788999999999999
Q ss_pred hhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 379 GTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 379 ~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
+.+++.++|.+.|.+.+.. +.++|..+|.+.++..+++.++.....+.+
T Consensus 405 ~~l~~~i~p~l~g~~~~~~--------~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 453 (465)
T TIGR00894 405 GFIGGLIASTLAGNILSQD--------SKNVWLIVFLIMAFVNILCVIFYLIFGSAE 453 (465)
T ss_pred HHHHHHHHHHhhheeeCCC--------CchHHHHHHHHHHHHHHHHHHHeeeeecce
Confidence 9999999999999988754 113688999999988888887777665443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=318.59 Aligned_cols=379 Identities=16% Similarity=0.114 Sum_probs=302.4
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWS 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 85 (439)
++|..+..++++.++..+|.+.++..+|.+.+|+|.+.++.+|+.+.|.+++..+.+++|+++||+|||+++..+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhcc-CCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCc
Q 013609 86 STCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWV-PPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPN 164 (439)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr 164 (439)
++++++++++ |++.++++|+++|+|.+...+.....+.+++ |+++|++++++......+|..+||.+++.+.++.+||
T Consensus 83 ~~~~~~~~a~-~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr 161 (495)
T PRK14995 83 LASLAAAFSP-TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWG 161 (495)
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence 9999999997 9999999999999999998888888887776 6789999999999999999999999999999999999
Q ss_pred hhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCccccc--------------CccCcccchh-------------hhhcc
Q 013609 165 SVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFG--------------ESLLPMRDQK-------------VKVDN 217 (439)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~-------------~~~~~ 217 (439)
+.|++...++++..++..+..||+++++.++.|..+.. +....+.... .....
T Consensus 162 ~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~ 241 (495)
T PRK14995 162 SVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIR 241 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777777777777654432322221110 0000000000 00000
Q ss_pred ccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHH
Q 013609 218 GGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVAD 297 (439)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 297 (439)
.+.+.+++..+ .+++|+|.++...+..++.....++...+.|.|+++.+|+|+.+++....+..++..++.++.|++.|
T Consensus 242 ~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~ 320 (495)
T PRK14995 242 TQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVS 320 (495)
T ss_pred HHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333344 47899999998888888888888888999999999999999999999999999999999999999999
Q ss_pred HhhhccccchhhhhHHHHHHHHHHHHHHHhhhccc---CChhHH-HHHHHHHHHhhhcccccccccccccCCChhhHHHH
Q 013609 298 HLITKRILSVTRTRKFLNTVGFMVASIALMALPIF---RSSNGA-IFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMG 373 (439)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 373 (439)
|+++|+ ....+.++..++...+... ++.+.. ...++.+.+.+....+.......+.++++++.+.+
T Consensus 321 r~g~~~----------~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~ 390 (495)
T PRK14995 321 RLGLRL----------VATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGA 390 (495)
T ss_pred HcCchH----------HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHH
Confidence 999887 6666776666655544322 222222 22333344444444444555566677799999999
Q ss_pred HHHHHhhhhHHHHHHHHHHhhcc
Q 013609 374 ISNTAGTLAGIVGVDMTGKLLEA 396 (439)
Q Consensus 374 ~~~~~~~~g~~i~~~~~g~l~~~ 396 (439)
+.+..+++|+.+|+.+.|.+.++
T Consensus 391 ~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 391 IETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999764
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=312.43 Aligned_cols=385 Identities=19% Similarity=0.219 Sum_probs=299.4
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHH
Q 013609 3 NFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFV 82 (439)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 82 (439)
+.+++|.++..++...++++++....++..|.+.+|+|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 45678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC
Q 013609 83 LWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG 162 (439)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 162 (439)
+..++.+++++++ |++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..+++.+++.+.+..+
T Consensus 89 ~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 167 (406)
T PRK11551 89 LFGLFSLATAQAW-DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA 167 (406)
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 9999999999997 999999999999999999999999999999999999999999999999999999999988888899
Q ss_pred CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhc---chhHH
Q 013609 163 PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVV---NLPVW 239 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 239 (439)
||+.|++.++..++..+....+.||+|++.+++.+.+ +.....+..++ ++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 223 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK------------------------QRAPVLRALFGEGRATATL 223 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch------------------------hhhhhHHHHhhhhhhhHHH
Confidence 9999999887766666656666777665432211000 00000111111 22334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHH
Q 013609 240 AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGF 319 (439)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 319 (439)
......++.....+....+.|.++++ .|+++.+.+.......++.++++++.|++.||+++|+ ....+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~----------~~~~~~ 292 (406)
T PRK11551 224 LLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR----------VVLLIY 292 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHH
Confidence 44444555556667778899999987 7999999999999999999999999999999999888 555555
Q ss_pred HHHHHHHhhhcccCChhHHHHHH-HHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccc
Q 013609 320 MVASIALMALPIFRSSNGAIFCS-SIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAK 398 (439)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 398 (439)
+...++...+...++........ ..+.+..+..........+..++++|+++.|+.+...++++.++|.+.|.+.+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~- 371 (406)
T PRK11551 293 AGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG- 371 (406)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC-
Confidence 55555555555444443332222 2222222222222233344456689999999999999999999999999999876
Q ss_pred ccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 399 TTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
+++...+.......+++.+..+...+
T Consensus 372 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 372 ---------RSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777777677666666655543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=309.42 Aligned_cols=377 Identities=15% Similarity=0.178 Sum_probs=291.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWS 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 85 (439)
..|.....++++.+..... ...++.+|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~ 85 (393)
T PRK09705 7 LNFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA 85 (393)
T ss_pred hHHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence 3455555555554444433 678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhccc-CCc
Q 013609 86 STCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN-GPN 164 (439)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~wr 164 (439)
++.+.+++++ |++.++++|+++|++.+...+....++.|++| ++|+++++++..+...|..+++.+++.+.++. +||
T Consensus 86 ~~~~~~~~a~-~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~ 163 (393)
T PRK09705 86 VGALMRELYP-QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWY 163 (393)
T ss_pred HHHHHHHHCc-chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 9999999997 99999999999999999999999999999997 88999999999999999999999999988875 899
Q ss_pred hhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHH
Q 013609 165 SVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVN 244 (439)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (439)
+.+.+.++..++.....+...+++|++++ ++ + . +.++.+++|+.|...+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~-~--~-~~~~~l~~~~~~~l~~~ 213 (393)
T PRK09705 164 QTLAWWALPAVVALFAWWWQSAREVASSH--------------------------KT-T--T-TPVRVVFTPRAWTLGVY 213 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccc--------------------------CC-C--c-CCcccccCHhHHHHHHH
Confidence 98877666554443333322222221110 00 0 0 11345677888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHH
Q 013609 245 NFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASI 324 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++....+.....+.|.++++ +|.+..+++...+...++.++++++.+++.||.++|+ ....+..+..+
T Consensus 214 ~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~----------~~~~~~~l~~~ 282 (393)
T PRK09705 214 FGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK----------LLMLALVLQLV 282 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH----------HHHHHHHHHHH
Confidence 777788888899999999988 7999999999999999999999999999999999888 66666666666
Q ss_pred HHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccC
Q 013609 325 ALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSD 403 (439)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~ 403 (439)
+...+...+.........+.+.+.+...+.......++.+| +++++..|+.+...++++.++|.+.|++.|..
T Consensus 283 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~------ 356 (393)
T PRK09705 283 GFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS------ 356 (393)
T ss_pred HHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 55544332322222222233333333333222333445544 68999999999999999999999999999998
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHhccCCc
Q 013609 404 LSSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
++|...|.+.++.+++..+....+.++++
T Consensus 357 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 357 ----GNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 47888898888888777777666655543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=311.22 Aligned_cols=381 Identities=33% Similarity=0.617 Sum_probs=330.8
Q ss_pred HhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcc-hHHHHHHHHHHHhhhcccc
Q 013609 37 DAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPN-NVFILVVARLLVGVSQGFI 115 (439)
Q Consensus 37 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~ 115 (439)
.+++++.+|.+++.+.+..|+.+++++.|+++||+|-|+++..+.++.++++++..++.+ +++.+++.|++||++.|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 368889999999999999999999999999999999999999999999999999988853 5668899999999999999
Q ss_pred hhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc-cCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCC
Q 013609 116 FPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY-NGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHP 194 (439)
Q Consensus 116 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (439)
.|+...+.++|.|++||++..++..++..+|.+++.+++|.+.+. +||+.+|++.++++++..++++.+..|+|+++ +
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h-~ 224 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH-P 224 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC-C
Confidence 999999999999999999999999999999999999999999998 99999999999999999999888888888874 3
Q ss_pred CCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Q 013609 195 KASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEM 274 (439)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (439)
....+|......... ++..+++...|++++++++.+|.+.+..++...+.+.+..|.|.|+++++|++..+.
T Consensus 225 ~is~~El~~I~~~k~--------~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~ 296 (466)
T KOG2532|consen 225 NISEKELKYIEKGKS--------EAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRET 296 (466)
T ss_pred CCCHHHHHHHHhccc--------ccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhh
Confidence 333222211110000 001112267899999999999999999999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChh--HHHHHHHHHHHhhhcc
Q 013609 275 GSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSN--GAIFCSSIALGFLALG 352 (439)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 352 (439)
|++.++..+...+..++.|.++||+.+| ..+++..||....++....++.++.+.+.+... ..+.++.+..++.+..
T Consensus 297 G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~ 375 (466)
T KOG2532|consen 297 GFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFN 375 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccc
Confidence 9999999999999999999999999998 888999999999999999999999999887433 4555666666777777
Q ss_pred cccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 353 RAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
.+.......+..|++.+..+|+.+....+.+.++|.+.|.+.... +...|+.+|++.+++.+++.+++.++.
T Consensus 376 ~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~--------t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 376 ISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDN--------TREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred hhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCC--------CHHHHHHHHHHHHHHHHHhchheeEee
Confidence 777777777778999999999999999999999999999998521 224899999999999999998887775
Q ss_pred cCC
Q 013609 433 TGE 435 (439)
Q Consensus 433 ~~~ 435 (439)
+.+
T Consensus 448 s~e 450 (466)
T KOG2532|consen 448 SGE 450 (466)
T ss_pred cCc
Confidence 443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=304.69 Aligned_cols=361 Identities=16% Similarity=0.095 Sum_probs=267.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHH
Q 013609 20 VCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVF 99 (439)
Q Consensus 20 ~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (439)
.+......+++.+|.+.+|+|+|++|.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......+ |++
T Consensus 2 ~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~ 80 (368)
T TIGR00903 2 ASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF-NYE 80 (368)
T ss_pred hhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc-cHH
Confidence 3456677899999999999999999999999999999999999999999999999987766555544443333335 899
Q ss_pred HHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHH
Q 013609 100 ILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSL 179 (439)
Q Consensus 100 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~ 179 (439)
.+++.|+++|++.+. .+.....++|++|+|+|++++++.+.+..+|..+++++++.+.+++|||+.|++.++++++..+
T Consensus 81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII 159 (368)
T ss_pred HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 999999999999985 5666677799999999999999999999999999999999999999999999999998888777
Q ss_pred HHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 013609 180 LWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWL 259 (439)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
+.++..||+|+++.++. + . ++...++++++|||.+|...+..++....++++.+|+
T Consensus 160 ~~~~~lp~~p~~~~~~~---~-------------------~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wl 215 (368)
T TIGR00903 160 LVLAALPALPFQAAEGF---G-------------------F--KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWL 215 (368)
T ss_pred HHHHHcCCCCCCCCCCc---c-------------------h--HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888776532100 0 0 0001246789999999999999999999999999999
Q ss_pred HHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHH
Q 013609 260 PTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAI 339 (439)
Q Consensus 260 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (439)
|.|+++ .|++.. .+.......+.+. +..++++||..||+ .|+........+.++....+....+....+
T Consensus 216 p~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~~r~~------~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 284 (368)
T TIGR00903 216 EAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRVARAG------LRSIYIRAAALLIAAFFLALAFELNRLALF 284 (368)
T ss_pred HHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHhhhhh------hHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence 999987 678754 4554444444444 44578889887654 111222223333344443444333333333
Q ss_pred HHHHHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHH
Q 013609 340 FCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPG 418 (439)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (439)
....+...+.....+....+..|..| |.|+++.|+.+...++++.++|.+.+.+.. +.+..|.+.+
T Consensus 285 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-------------~~~~~f~~~~ 351 (368)
T TIGR00903 285 AFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-------------SAEAYFTFLA 351 (368)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-------------CHHHHHHHHH
Confidence 22222222222232334455556555 799999999999999999999999988773 3566777777
Q ss_pred HHHHHHHHHHHH
Q 013609 419 LLCILSSFVFLL 430 (439)
Q Consensus 419 ~~~~~~~~~~~~ 430 (439)
+..+++.+....
T Consensus 352 ~~~~i~~~~~~~ 363 (368)
T TIGR00903 352 ILITIAFAIALL 363 (368)
T ss_pred HHHHHHHHHHHh
Confidence 777777766543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=306.29 Aligned_cols=383 Identities=14% Similarity=0.094 Sum_probs=272.7
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhC---CCccchhhhhh---hhhhhhhhhcccccccccccCchHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAG---VNQSSKGTILS---TFYYGYACSQVPGGWAAQKIGGRKVL 77 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~g~~~s---~~~~~~~~~~~~~g~l~dr~Grr~~l 77 (439)
+++++..+...+++.+++++|...++...|.+.+|++ .+..+.+...+ ...++..++++++|+++||+|||+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l 96 (432)
T PRK10406 17 TRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM 96 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3456666777788999999999999999999999985 44554444444 44455559999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcchHH--------HHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHH
Q 013609 78 LFSFVLWSSTCFWLKLDPNNVF--------ILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAM 149 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 149 (439)
..+.++++++++++++++ ++. .+++.|+++|++.|..++...++++|++|+|+|+++.++.+.+...|..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~ 175 (432)
T PRK10406 97 LISVCMMCFGSLVIACLP-GYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL 175 (432)
T ss_pred HHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999997 664 68999999999999999999999999999999999999998888888888
Q ss_pred Hhhhhhhhh--------cccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhcccccc
Q 013609 150 GMLFLPSLV--------KYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSA 221 (439)
Q Consensus 150 g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (439)
++.+...+. +.+|||++|++.++++++... .....||+|+++.+ +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~~~~-------------------------~- 228 (432)
T PRK10406 176 ALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQETR-------------------------A- 228 (432)
T ss_pred HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchHHHh-------------------------h-
Confidence 887655543 257999999988777665432 23334454332100 0
Q ss_pred ccccCchHHhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhh
Q 013609 222 MKAAKIPWKRIVVNLPVWAIVVNNFT-FHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300 (439)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 300 (439)
+++..++++++|+|+.+...+...+ ....++.+..|+|.|+++.+|++..+.+.......+...++..+.|+++||++
T Consensus 229 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~g 307 (432)
T PRK10406 229 -LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIG 307 (432)
T ss_pred -hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0112346788889888776665544 36677888999999998888999888888888888888888999999999999
Q ss_pred hccccchhhhhHHHHHHHHHHHHHHHh-h---hcccCChhHHHHHHHHHHHhhhcccccccccccccCC-ChhhHHHHHH
Q 013609 301 TKRILSVTRTRKFLNTVGFMVASIALM-A---LPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGIS 375 (439)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~ 375 (439)
||+ ....+..+..+... . ....++.........+..+..+...+.......|..| |.|+++.|+.
T Consensus 308 rr~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~ 377 (432)
T PRK10406 308 RRT----------SMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLS 377 (432)
T ss_pred chH----------HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHH
Confidence 887 44443332222211 1 1111222222222222222222222334455556555 7899999999
Q ss_pred HHHhhh-hHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCc
Q 013609 376 NTAGTL-AGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 376 ~~~~~~-g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
+...+. .+...|.+.+. .+.. +.+...+++.++..+++.+..++++++.|
T Consensus 378 ~~~g~~~~g~~~p~~~~~-l~~~----------g~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 428 (432)
T PRK10406 378 YAVANALFGGSAEYVALS-LKSI----------GMETAFFWYVTLMAVVAFLVSLMLHRKGK 428 (432)
T ss_pred HHHHHHHHHhHHHHHHHH-HHHh----------CCCcHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 988775 34557777774 4554 25666677777777777666666555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=308.50 Aligned_cols=394 Identities=24% Similarity=0.406 Sum_probs=299.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcch
Q 013609 18 TCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNN 97 (439)
Q Consensus 18 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 97 (439)
+++..++...++...|.+.+++|.++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++..++++++ |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-~ 81 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG-A 81 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc-C
Confidence 456788889999999999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHH
Q 013609 98 VFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMW 177 (439)
Q Consensus 98 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~ 177 (439)
++.+++.|+++|++.+...+...+++.|++|+|+|++.+++.+....+|..+++.+++.+.+..+||+.|++.+++.++.
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred HHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 013609 178 SLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMN 257 (439)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
.+...+..||+|++++...++++....+ ... .+.+.+++.++...+.++.+++|+++...+..++..........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (399)
T TIGR00893 162 GVLWLKFIPDPPQKAKWLTEEEKYIVVG-GLL----AEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLT 236 (399)
T ss_pred HHHhhheecCCCCccccCCHHHHhhcch-hhc----cccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHH
Confidence 6666666666654432211111100000 000 00001111222334567889999999999999999999999999
Q ss_pred HHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhH
Q 013609 258 WLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNG 337 (439)
Q Consensus 258 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (439)
+.|.|+++.+|.++.+.+.+.....++.+++.++.+++.||+++|+... .........+..+...........+....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (399)
T TIGR00893 237 WFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSL--VFARKTAIIAGLVLSLLMFATNYVNIPYA 314 (399)
T ss_pred HHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 9999999889999999999999999999999999999999999885110 00000111111111122222221222222
Q ss_pred HHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHH
Q 013609 338 AIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFI 416 (439)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 416 (439)
......+..+..+ ..+.......| .++++|+++.|+.+...++|+.++|.+.|.+.|.. ++|+..+.+
T Consensus 315 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~----------g~~~~~~~~ 383 (399)
T TIGR00893 315 ALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT----------GSFAGALMV 383 (399)
T ss_pred HHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC----------CchhHHHHH
Confidence 2222333333323 23344444444 55589999999999999999999999999999987 248999988
Q ss_pred HHHHHHHHHHHHHH
Q 013609 417 PGLLCILSSFVFLL 430 (439)
Q Consensus 417 ~~~~~~~~~~~~~~ 430 (439)
.+++.+++.+..+.
T Consensus 384 ~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 384 VAALALIGALSYLL 397 (399)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777666543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=298.86 Aligned_cols=370 Identities=15% Similarity=0.153 Sum_probs=281.4
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVL 83 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 83 (439)
.++.|..+..+..+.+..........+.+|++.+|+|.++++.++..+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~ 94 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL 94 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 45567766677776666666666777789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC
Q 013609 84 WSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 163 (439)
.+++.+++++++ |++.+++.|+++|++.+...+...+++.|++|+|+|++++++...+.++|..++|++++.+.+++||
T Consensus 95 ~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw 173 (394)
T PRK10213 95 LTLSCLLVSFAN-SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW 173 (394)
T ss_pred HHHHHHHHHHHC-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 999999999986 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHH
Q 013609 164 NSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVV 243 (439)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (439)
|+.|++.++++++..+......||+|++++ +...+.++.+|+|.++...+
T Consensus 174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~------------------------------~~~~~~~~~l~~~~~~~~~~ 223 (394)
T PRK10213 174 RNVFNAAAVMGVLCIFWIIKSLPSLPGEPS------------------------------HQKQNTFRLLQRPGVMAGMI 223 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCcccc------------------------------cchhHHHHHhcCHHHHHHHH
Confidence 999999887776655544444555432110 01112357888999988777
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHH
Q 013609 244 NNFTFHYALYVLMNWL-PTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVA 322 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (439)
..++.....+....+. |.+. +.+|+++.+.+......+++.+++..+.+++.||.+++. .........
T Consensus 224 ~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~----------l~~~~~~~~ 292 (394)
T PRK10213 224 AIFMSFAGQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLA----------LAGAPLVLA 292 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhH----------HHHHHHHHH
Confidence 6666666666666776 5555 458999999999889899999999999999999843322 333333323
Q ss_pred HHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccccc
Q 013609 323 SIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYS 402 (439)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~ 402 (439)
...+.+....++.+......++.........+.......+..|+++++..+......++|..+||.+.|.+.|..
T Consensus 293 ~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~----- 367 (394)
T PRK10213 293 VSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNI----- 367 (394)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 333333333333333332222222222333343443334444566778888888889999999999999999987
Q ss_pred CCCCcccchhHHHHHHHHHHHHHH
Q 013609 403 DLSSPESWRAVFFIPGLLCILSSF 426 (439)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~ 426 (439)
++...+...+++.++..+
T Consensus 368 ------g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 368 ------GLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred ------ChhhHHHHHHHHHHHHHH
Confidence 777777777666554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=301.56 Aligned_cols=378 Identities=13% Similarity=0.120 Sum_probs=293.3
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVL 83 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 83 (439)
+.+|++....++++.++.+.+....++.+|++.+++|+|+++.+++.+.+.+++.+++++.|++.||+|||+++..+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~ 81 (394)
T PRK03699 2 NSNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL 81 (394)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc-ccC
Q 013609 84 WSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK-YNG 162 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~ 162 (439)
.+++.+++++++ +++.+++.|+++|++.+...+...+++.|++|+++|++.++..+....+|..++|.+.+.+.+ ..+
T Consensus 82 ~~i~~~l~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g 160 (394)
T PRK03699 82 MILAVAGLMFSH-SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE 160 (394)
T ss_pred HHHHHHHHHHcc-hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999997 999999999999999998899999999999999999999999999999999999998887754 579
Q ss_pred CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHH
Q 013609 163 PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (439)
||+.|.+.+++.++..++.++ ++.|+.++++.+ + + ++..+ + ..++.++...
T Consensus 161 w~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~~--~-------------------~-~~~~~----~-~~~~~~~~~~ 211 (394)
T PRK03699 161 WYWVYACIGLVYVAIFILTLF--SEFPALGKHAPK--A-------------------D-KPVAK----E-KWGIGVLFLA 211 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCCccccccCcc--c-------------------c-Ccccc----c-cCChHHHHHH
Confidence 999999988877665544432 222221111000 0 0 00000 1 1245667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHH
Q 013609 243 VNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVA 322 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (439)
+..++.....+.+..|.|.|+++.+|+|+.+.+.+.+...++..+++++.+++.||+++|+ .......+.
T Consensus 212 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~----------~l~~~~~~~ 281 (394)
T PRK03699 212 IAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR----------ILTVLAGLA 281 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh----------HHHHHHHHH
Confidence 7777777778888999999998889999999999999999999999999999999999988 555555555
Q ss_pred HHHHhhhcccCChhHHHH-HHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccc
Q 013609 323 SIALMALPIFRSSNGAIF-CSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTY 401 (439)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~ 401 (439)
.+....+...++...... ....+.+.. ...+.......+..|+++++..|......++|..++|.+.|.+.|..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~---- 356 (394)
T PRK03699 282 LVLMYLFVNTDDPSHLLYAILGLGFFSS-AIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHF---- 356 (394)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh----
Confidence 555545444444433322 222222222 22233333444555666778889999999999999999999999987
Q ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 402 SDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
+++..+++.+++++++.+......+
T Consensus 357 -------g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 357 -------GLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred -------CchhhhhhhHHHHHHHHHHHHHHHH
Confidence 7888888887777777655555443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=306.10 Aligned_cols=390 Identities=13% Similarity=0.111 Sum_probs=271.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccc-hhhh-----hhhhhhhhhhhcccccccccccCchHHHHHHH
Q 013609 8 YLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSS-KGTI-----LSTFYYGYACSQVPGGWAAQKIGGRKVLLFSF 81 (439)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~g~~-----~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 81 (439)
+..+...+++.+++++|...++...|.+.++++.+.++ .+++ .++..+++.++++++|+++||+|||+++.+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45677788999999999999999999999999755433 2222 47778999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcchHHH--------HHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhh
Q 013609 82 VLWSSTCFWLKLDPNNVFI--------LVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLF 153 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 153 (439)
++++++++++++++ |++. ++++|+++|++.|..++...++++|++|+|+|+++.++...+..+|..+++.+
T Consensus 95 ~l~~i~~~~~a~~~-~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~ 173 (490)
T PRK10642 95 VIMSISTFCIGLIP-SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV 173 (490)
T ss_pred HHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 8864 89999999999999999999999999999999999999998888888888766
Q ss_pred hhhhh--------cccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhcccccccccc
Q 013609 154 LPSLV--------KYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAA 225 (439)
Q Consensus 154 ~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (439)
...+. +.+|||+.|++.++++++. ++.....||+|++.+.+.+.++..+ + ...+++
T Consensus 174 ~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp~~~~~~~~~~~~~~------~---------~~~~~~ 237 (490)
T PRK10642 174 VVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEETPAFQQHVDKLEQGDR------E---------GLQDGP 237 (490)
T ss_pred HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCChhHHHHHHhhhhhcc------c---------cccccc
Confidence 54432 2579999999977665543 3334566787765321111000000 0 000112
Q ss_pred CchHHhhhcc-hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 013609 226 KIPWKRIVVN-LPVW-AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKR 303 (439)
Q Consensus 226 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 303 (439)
..++++++++ ++.+ ......++....++....++|.|+++.+|++..+.+.......++.+++.++.|+++||+|||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 317 (490)
T PRK10642 238 KVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP 317 (490)
T ss_pred cCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 2345566553 2322 2233334556777888899999998878998888777777778889999999999999999998
Q ss_pred ccchhhhhHHHHHHHHHHHHH-HH--hhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHh
Q 013609 304 ILSVTRTRKFLNTVGFMVASI-AL--MALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAG 379 (439)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~ 379 (439)
.+..+.+...+ .. +.....++........++.....+...........+ .|++.|+++.|+.+...
T Consensus 318 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~ 387 (490)
T PRK10642 318 ----------FVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNIS 387 (490)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHH
Confidence 55554433222 11 111122222222222222111111122222333334 45589999999877777
Q ss_pred hhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccC
Q 013609 380 TLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 380 ~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
..++.++|.+.+++.+.. +++..++.+..+..+++.+..+++++.
T Consensus 388 ~~~g~~~p~i~g~l~~~~----------~~~~~~~~~~~~~~~i~~~~~~~~pes 432 (490)
T PRK10642 388 VLVAGLTPTLAAWLVEST----------QNLMMPAYYLMVVAVIGLITGVTMKET 432 (490)
T ss_pred HHHHHHHHHHHHHHHHHh----------CCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 888899999999998865 245555555555666666655555443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=297.65 Aligned_cols=359 Identities=16% Similarity=0.097 Sum_probs=285.8
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHH
Q 013609 3 NFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFV 82 (439)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 82 (439)
.+++.+.....+.+..++..++...+.+.+|.+.+|+|.|+.+.++..+.+.+++.+++++.|+++||+|||+++..+..
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 86 (406)
T PRK15402 7 LGRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA 86 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 34566777778888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC
Q 013609 83 LWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG 162 (439)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 162 (439)
+.+++.+.+.+++ +++.+++.|+++|++.+...+...+.+.|++|+++|.+..++......+|..++|.+++.+.++.+
T Consensus 87 ~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~ 165 (406)
T PRK15402 87 FFILTCLAILLAQ-SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP 165 (406)
T ss_pred HHHHHHHHHHHHc-cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999987 999999999999999998889999999999999999999999988888999999999999999899
Q ss_pred CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHH
Q 013609 163 PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (439)
||+.|++.++..++..+..++..||++++.+++ .+.++..++++++++||+++...
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~ 221 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGEK------------------------LSLKELGRDYKLVLKNRRFVAGA 221 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc------------------------ccHHHHHHHHHHHHcCcHHHHHH
Confidence 999999988888776665555556554322110 00012234557889999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHH
Q 013609 243 VNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVA 322 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (439)
+..++..........+.|.++++.+|.++.+.+.......++.+++.++.+++.||.++|+ ....+.++.
T Consensus 222 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~----------~~~~~~~~~ 291 (406)
T PRK15402 222 LALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS----------LIRMGLWPM 291 (406)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH----------HHHHHHHHH
Confidence 7777776666777778899988889999998888877777888999999999999999888 666666655
Q ss_pred HHHHhhhccc----C-ChhHHHH-HHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcc
Q 013609 323 SIALMALPIF----R-SSNGAIF-CSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEA 396 (439)
Q Consensus 323 ~~~~~~~~~~----~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 396 (439)
.++...+... + +...... ..+.+.+..... +..........++++|++.+..+..+.++..+|+.+.+.+.+.
T Consensus 292 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 292 VAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLAN-AGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHh-hhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 5554444321 1 2222222 222333333222 2333333344568999999999999999999999999999887
Q ss_pred c
Q 013609 397 A 397 (439)
Q Consensus 397 ~ 397 (439)
.
T Consensus 371 ~ 371 (406)
T PRK15402 371 G 371 (406)
T ss_pred C
Confidence 7
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=299.88 Aligned_cols=364 Identities=15% Similarity=0.172 Sum_probs=284.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcC
Q 013609 14 TFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKL 93 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 93 (439)
.++...+........++..|.+.+|+|+|+++.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~ 87 (377)
T TIGR00890 8 GTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI 87 (377)
T ss_pred HHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHH
Confidence 33334444444677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHH
Q 013609 94 DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAAL 173 (439)
Q Consensus 94 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~ 173 (439)
++ |++.+++.|+++|++.+...+.....+.|++| |+|+++.++...+.++|..+++++.+.+.+..+||+.|++.+++
T Consensus 88 ~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~ 165 (377)
T TIGR00890 88 AD-SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII 165 (377)
T ss_pred HH-HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 97 99999999999999999888888889999996 67999999999999999988777777777788999999999988
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHH
Q 013609 174 GGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALY 253 (439)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (439)
.++..+..+++.+|+|++++++.+ +.+++..+.++.+|+|+++......++......
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (377)
T TIGR00890 166 FLLVIVLGAFLIGYPPGQLIKTNI-----------------------EVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGL 222 (377)
T ss_pred HHHHHHHHHHheecCchhccccCc-----------------------ccchhhhhHHHHHcCccHHHHHHHHHHHhHHHH
Confidence 888776666666554432211100 000111234678889988887777777666666
Q ss_pred HHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccC
Q 013609 254 VLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFR 333 (439)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
....+.+.|.++ +|.++.+.+.......+...+++++.+++.||++||+ ....+....+++.+.+...+
T Consensus 223 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~----------~~~~~~~~~~~~~~~~~~~~ 291 (377)
T TIGR00890 223 LLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK----------TMSIVFGISAVGMAAMLFIP 291 (377)
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hhhHHHHHHHHHHHHHHHcc
Confidence 666777777766 7888888888889999999999999999999999988 66667676666666555544
Q ss_pred ChhH--HHH-HHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCccc
Q 013609 334 SSNG--AIF-CSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPES 409 (439)
Q Consensus 334 ~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~ 409 (439)
+... ... ..+.+.+. +...+.......| .++++|+++.|+.+...++|..++|.+.|.+.|.. +
T Consensus 292 ~~~~~~~~~~~~~~g~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-----------g 359 (377)
T TIGR00890 292 MLNDVLFLATVALVFFTW-GGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-----------G 359 (377)
T ss_pred cchhHHHHHHHHHHHHHh-ccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-----------c
Confidence 3221 111 12222222 2222333334444 45589999999999999999999999999999987 8
Q ss_pred chhHHHHHHHHHHHHH
Q 013609 410 WRAVFFIPGLLCILSS 425 (439)
Q Consensus 410 ~~~~~~~~~~~~~~~~ 425 (439)
|+..|.+.+++.+++.
T Consensus 360 ~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 360 FEYTFIVTGAFALTSL 375 (377)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 9999988888777654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=313.79 Aligned_cols=407 Identities=13% Similarity=0.126 Sum_probs=304.7
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVL 83 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 83 (439)
.+.+|.++.+++++.+.++++...++.++|.+.++++++..+.+++.+++.++.+++++++|+++||+|||+++++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 35677888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc---
Q 013609 84 WSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY--- 160 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--- 160 (439)
.+++.+++++++ +++.++++|+++|++.++..+...+++.|++|+++|++.+++...+..+|.++++.++..+...
T Consensus 242 ~~i~~ll~afa~-s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 242 NGFFAFFSSFVQ-GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999997 9999999999999999999999999999999999999999999999999999999887665532
Q ss_pred ----------cCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCc--------cCc---ccch------hh
Q 013609 161 ----------NGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGES--------LLP---MRDQ------KV 213 (439)
Q Consensus 161 ----------~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~------~~ 213 (439)
.+||+.+++.++++++. ++..++.||+|++...+.+.+++... ... ..+. ..
T Consensus 321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~ 399 (742)
T TIGR01299 321 SFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT 399 (742)
T ss_pred hhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence 36899888877766554 44556789999886544443322200 000 0000 00
Q ss_pred hhccc-----cccccc---------------cCchHHhhhcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 013609 214 KVDNG-----GSAMKA---------------AKIPWKRIVVN---LPVWAIVVNNFTFHYALYVLMNWLPTYFELG---- 266 (439)
Q Consensus 214 ~~~~~-----~~~~~~---------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 266 (439)
....+ +.+..+ ...+++++++. ++.+.+++.+++..++++++..|+|.++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~ 479 (742)
T TIGR01299 400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADD 479 (742)
T ss_pred hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000000 00123444443 3456777888889999999999999886541
Q ss_pred h-----------------CCccc---------------------------------------------------------
Q 013609 267 L-----------------QLSLQ--------------------------------------------------------- 272 (439)
Q Consensus 267 ~-----------------g~~~~--------------------------------------------------------- 272 (439)
+ +++..
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 559 (742)
T TIGR01299 480 YAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENT 559 (742)
T ss_pred HHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhcccc
Confidence 0 00000
Q ss_pred ------------------------------------ccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHH
Q 013609 273 ------------------------------------EMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNT 316 (439)
Q Consensus 273 ------------------------------------~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 316 (439)
.......+..++.+++.++.++++||+|||+ ++.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~----------~l~ 629 (742)
T TIGR01299 560 DFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR----------MLA 629 (742)
T ss_pred chhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----------HHH
Confidence 0122244556888999999999999999999 888
Q ss_pred HHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhc
Q 013609 317 VGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395 (439)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 395 (439)
.+.++.+++.+++.+.++....+...++..++.....+....+..|..| +.|++++|+.+....+|++++|.+.+.+.+
T Consensus 630 ~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 630 GSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777766554444443333333333344455566677666 789999999999999999999999998886
Q ss_pred cccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccC
Q 013609 396 AAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
.. ...+|++.+++.+++.++.+++++.
T Consensus 710 ~~------------~~~pf~i~a~~lll~~ll~~~LPET 736 (742)
T TIGR01299 710 IT------------KAAPILFASAALACGGLLALKLPDT 736 (742)
T ss_pred hh------------hHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 43 5667888888877777777766543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=295.53 Aligned_cols=372 Identities=16% Similarity=0.175 Sum_probs=287.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHh
Q 013609 10 IVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCF 89 (439)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 89 (439)
.+..+.+..++.........+.+|.+.+|+|.+.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 34556677788888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHH
Q 013609 90 WLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNA 169 (439)
Q Consensus 90 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~ 169 (439)
++++++ |++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++++++.+.+..+||+.|++
T Consensus 84 l~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 84 MFTLSS-SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred HHHHhC-cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 999997 9999999999999999988888899999999999999999999999999999999999999998999999999
Q ss_pred HhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHH
Q 013609 170 EAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFH 249 (439)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (439)
.+++.++..+..++..||.+++++. +.++. .+.+|+++.+......++..
T Consensus 163 ~~~~~~~~~~~~~~~lp~~~~~~~~-----------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~ 212 (382)
T PRK10091 163 IAVFNIAVLASIYFWVPDIRDEAKG-----------------------------GLREQ-FHFLRSPAPWLIFAATMFGN 212 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCCccccc-----------------------------CHHHH-HHHhcChHHHHHHHHHHHHH
Confidence 9988777666555566664321100 00011 24567777777666555555
Q ss_pred HHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhh
Q 013609 250 YALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMAL 329 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
........+.+.++++.+|+++.+.+.+.....++.++++++.+++.||+++|+ ....+..+.+++.+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~----------~~~~~~~~~~i~~~~~ 282 (382)
T PRK10091 213 AGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR----------IAAVTDFIIVLALLML 282 (382)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh----------HHHHHHHHHHHHHHHH
Confidence 555566677788888778999999999999999999999999999999999888 6666666666655444
Q ss_pred cc-cCChhHHHH-HHHHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCC
Q 013609 330 PI-FRSSNGAIF-CSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSS 406 (439)
Q Consensus 330 ~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~ 406 (439)
.. .++.+.... ..+...+..+...+.......+.++ +.++.+ ..+...++|.++||.+.|.+.|..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~--------- 351 (382)
T PRK10091 283 FFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG--------- 351 (382)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc---------
Confidence 33 223222222 2222333333333333233334333 455544 346778999999999999999976
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhccC
Q 013609 407 PESWRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
++|+..+.+.++.+++.........++
T Consensus 352 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (382)
T PRK10091 352 -LAYNYVALPAALLSFAAMSSLLLYGRY 378 (382)
T ss_pred -cCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 489999998877776665555444333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=299.08 Aligned_cols=401 Identities=19% Similarity=0.264 Sum_probs=285.6
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWS 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 85 (439)
++|.++...++.....+.++..++...|.+.++ |.|..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 345556666677777778877788889999888 9999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCc---chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHH-HHhhhhhhhhccc
Q 013609 86 STCFWLKLDP---NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAA-MGMLFLPSLVKYN 161 (439)
Q Consensus 86 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~ 161 (439)
++.+++++++ ++++.+++.|++.|++.+...+.....+.|++|+|+|++++++.+.+.++|.. .+|+++..+....
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 184 (452)
T PRK11273 105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN 184 (452)
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 9998887752 26888999999999999988888888999999999999999999999999864 4555443443445
Q ss_pred CCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCch-HHhhhcchhHHH
Q 013609 162 GPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIP-WKRIVVNLPVWA 240 (439)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 240 (439)
+||+.|++.+++.++..++..++.||+|++...+.+.+.. ++.+.. ..++++++++..+. .+.++|+|.+|.
T Consensus 185 gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (452)
T PRK11273 185 DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYK--NDYPDD-----YNEKHEQELTAKQIFMQYVLPNKLLWY 257 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhh--hccccc-----cccccCCCccHHHHHHHHHHcChHHHH
Confidence 9999999998888777666666777776543211111000 000000 00000000111111 134678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHH
Q 013609 241 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFM 320 (439)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 320 (439)
..+..++.+...+....++|.|+++..|++..+++.......++.+++.++.|+++||+++++ +.........
T Consensus 258 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r-------~~~~~~~~~~ 330 (452)
T PRK11273 258 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN-------RGATGVFFMT 330 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------cchHHHHHHH
Confidence 888888888888888999999999988999989988888888999999999999999995433 0111111122
Q ss_pred HHHHHHhhhcc--cCChhHHHHHHHHHHHhhhccc-cccccc-ccccCCChhhHHHHHHHHHhhhhHHH-HHHHHHHhhc
Q 013609 321 VASIALMALPI--FRSSNGAIFCSSIALGFLALGR-AGFAVN-HMDIAPRYAGIVMGISNTAGTLAGIV-GVDMTGKLLE 395 (439)
Q Consensus 321 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~~i-~~~~~g~l~~ 395 (439)
+..++...+.. ..+..... ......+...... ...... .+..|++.+|+++|+.+...++|+.+ +|.+.|.+.|
T Consensus 331 l~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~ 409 (452)
T PRK11273 331 LVTIATIVYWLNPAGNPTVDM-ACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 409 (452)
T ss_pred HHHHHHHHHHHhcccChHHHH-HHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 22222222212 11222221 2222222221111 111222 34455689999999999999998765 7999999999
Q ss_pred cccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 396 AAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
.. +|+..|.++++.++++.+......+
T Consensus 410 ~~-----------g~~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 410 FF-----------GWDGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred Hh-----------cchHHHHHHHHHHHHHHHHHHHHhc
Confidence 98 7999999888888877766665443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=277.92 Aligned_cols=383 Identities=19% Similarity=0.209 Sum_probs=329.1
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVL 83 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 83 (439)
++.+.+.+....+...+.+..+...+++.+.+.+|+|+|++|.+++.++..+...+.-++.|.+.||+|.|++..++.++
T Consensus 9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l 88 (417)
T COG2223 9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL 88 (417)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence 45667788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcc--hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhccc
Q 013609 84 WSSTCFWLKLDPN--NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN 161 (439)
Q Consensus 84 ~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 161 (439)
..+-++..+++.+ +++++++.+.+.|++.+ ......+.+++|+|||++|.++|+.. ..++|..+...+++.+....
T Consensus 89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~ 166 (417)
T COG2223 89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF 166 (417)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence 9999998888852 45599999999999855 77999999999999999999999999 89999999999999999888
Q ss_pred C---CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccC-chHHhhhcchh
Q 013609 162 G---PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAK-IPWKRIVVNLP 237 (439)
Q Consensus 162 ~---wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 237 (439)
+ ||..-.+..+..++..+..++..+|.|+.+... ++.. ..++.+.++|+
T Consensus 167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~---------------------------~~~~~~~~~~v~~~~~ 219 (417)
T COG2223 167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV---------------------------KPQLPAQLKAVFSNKD 219 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc---------------------------cccchhHHHHHhcCcc
Confidence 8 999999988888888888888888877753221 1111 55678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHH
Q 013609 238 VWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTV 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 317 (439)
.|.+.+.++....++.++..++|.|+++++|.++.+++.......+.+.+.++++|+++||+|.+| ....
T Consensus 220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r----------v~~~ 289 (417)
T COG2223 220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR----------VTLA 289 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchh----------HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6666
Q ss_pred HHHHHHHHHhhhcccC-------ChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHH
Q 013609 318 GFMVASIALMALPIFR-------SSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMT 390 (439)
Q Consensus 318 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~ 390 (439)
.+..++++........ +.......++....+.+.......-......|++.|.+.|+....+.+|+..-|...
T Consensus 290 ~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~ 369 (417)
T COG2223 290 VFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAF 369 (417)
T ss_pred HHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHH
Confidence 6666666665555442 223333334445555566666677777788889999999999999999999999999
Q ss_pred HHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 391 GKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 391 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
|...+.+ ++++..|+++..+.+++.+..+...+++
T Consensus 370 g~~~~~t----------g~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 370 GVSLDLT----------GSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred HHHHHhc----------ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998 4799999999999988888777665554
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=297.94 Aligned_cols=390 Identities=13% Similarity=0.096 Sum_probs=280.5
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHH
Q 013609 3 NFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFV 82 (439)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 82 (439)
.++++|..+..++++++.++++....+++.|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC
Q 013609 83 LWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG 162 (439)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 162 (439)
+.+++.+++++++ +++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+
T Consensus 86 ~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 86 LFSAGTLACGFAP-GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999997 999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred --CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhc-c-hhH
Q 013609 163 --PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVV-N-LPV 238 (439)
Q Consensus 163 --wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 238 (439)
||+.|++.++..++.. +.....||++++++++.++++..+...+..+. +...+...++.....++..+ + +.+
T Consensus 165 ~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (405)
T TIGR00891 165 DGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVRTMVDILYGG---EHRIANIVMTLAAAMVQSAGKRWPTF 240 (405)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhhhHHHHHhcc---chhhhhhhhhhhHHhhhhhhhhhHHH
Confidence 9999988665554433 33344566544321111111000000000000 00000000000011111111 1 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHH
Q 013609 239 WAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVG 318 (439)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 318 (439)
...................+.|.|+++.+|+++.+.+.+.....++.+++.++.+++.||+++|+ ....+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~----------~~~~~ 310 (405)
T TIGR00891 241 VYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK----------AYVCS 310 (405)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh----------hhHHH
Confidence 23333344445555567788999998889999999999999999999999999999999999988 55555
Q ss_pred HHHHHHHHh-hhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcc
Q 013609 319 FMVASIALM-ALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEA 396 (439)
Q Consensus 319 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 396 (439)
......... .....++.........+...+.....+.......+ .++++|++++|+.+...++++.++|.+.|.+.|.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~ 390 (405)
T TIGR00891 311 LLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR 390 (405)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544432222 22222232222222122222222222333333444 5558999999999999999999999999999998
Q ss_pred ccccccCCCCcccchhHHHHH
Q 013609 397 AKTTYSDLSSPESWRAVFFIP 417 (439)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~ 417 (439)
. +.|+.++...
T Consensus 391 ~----------g~~~~~~~~~ 401 (405)
T TIGR00891 391 L----------DEYGTALASL 401 (405)
T ss_pred c----------cccchhHHhh
Confidence 8 3477666543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=298.28 Aligned_cols=392 Identities=15% Similarity=0.139 Sum_probs=287.4
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWS 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 85 (439)
+++..+...+...++...+.....+..|.+.+|+|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~ 112 (476)
T PLN00028 33 PHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA 112 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 34556666677778888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc------
Q 013609 86 STCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK------ 159 (439)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------ 159 (439)
++.+++++++ +++.+++.|+++|++.+.. +....+++|++|+++|++++++.+...++|..+++.+.+.+..
T Consensus 113 ~~~~~~~~~~-s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 190 (476)
T PLN00028 113 PAVFCMSLVS-SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG 190 (476)
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999997 8999999999999998864 4466789999999999999999987777777777666554421
Q ss_pred ---ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcch
Q 013609 160 ---YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNL 236 (439)
Q Consensus 160 ---~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (439)
..|||+.|++.+++.++..++.+++.+++|+...+ +..++ .+.++++....+++.++++
T Consensus 191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~-----~~~~~-------------~~~~~~~~~~~~~~~~~~~ 252 (476)
T PLN00028 191 APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR-----ELKKS-------------GTMPKDSFSKVLRYGVTNY 252 (476)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh-----hHHhc-------------CccccccHHHHHHHHHcCc
Confidence 25899999999998887776666665554432200 00000 0000011123456778899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHH
Q 013609 237 PVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNT 316 (439)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 316 (439)
++|...+..++.......+..+.|.|+.+.+|+++.+++.+.+...++.++++++.|+++||+++|+.. ..|+....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~---~~r~~~~~ 329 (476)
T PLN00028 253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGM---RGRLWALW 329 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCc---chhHHHHH
Confidence 998888777777666677888999999887899999999999999999999999999999999987521 11333444
Q ss_pred HHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcc
Q 013609 317 VGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEA 396 (439)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 396 (439)
....+.++..+.+...++........++.........+.......+..|+++|++.|+.+...++|+.++|.+.+ .+.
T Consensus 330 ~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~ 407 (476)
T PLN00028 330 IVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGS 407 (476)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH--hcC
Confidence 444444444444444443332222222222221222233344455677889999999998877777777776653 111
Q ss_pred ccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 397 AKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
. ++|+..|.+.+++.+++.++.++.+
T Consensus 408 ~----------~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 408 S----------YSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred C----------ccHhhHHHHHHHHHHHHHHHHHhee
Confidence 1 3799999999988888888877765
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=296.89 Aligned_cols=365 Identities=15% Similarity=0.139 Sum_probs=273.4
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
+.++..+..++++++.+.++.....+..|.+.+|+|+|+.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 45566788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCc
Q 013609 85 SSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPN 164 (439)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr 164 (439)
+++.+++++++ +++.++++|+++|++.+...+....++.|++|+|+|+++.++...+..+|.++++.+.+.+.+..+||
T Consensus 94 ~~~~~~~~~~~-~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~ 172 (426)
T PRK12307 94 SVGTGLSGLAS-GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR 172 (426)
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence 99999999997 99999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred hhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHH
Q 013609 165 SVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVN 244 (439)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (439)
+.|++.....++ .+......||++++.+++.+.++ + +.+...+....++++++++|.++.....
T Consensus 173 ~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~---------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (426)
T PRK12307 173 AAFFVGLLPVLL-VIYIRARAPESKEWEEAKLSGKG---------K------HSQSAWSVFSLSMKGLFNRAQFPLTLCV 236 (426)
T ss_pred HHHHHHHHHHHH-HHHHHHHCCCChHHHHhhhhccc---------c------ccccchhhhhHHHHHHHhhchHHHHHHH
Confidence 999875443322 22222222333222111100000 0 0000011122356788888877654433
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHH
Q 013609 245 N---FTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMV 321 (439)
Q Consensus 245 ~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 321 (439)
. +......+.+..++|.|+++ .|.++.+.+.+.....++.++++++.+++.||+++|+ ....+.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~----------~~~~~~~~ 305 (426)
T PRK12307 237 FIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK----------TFSIGLLM 305 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----------HHHHHHHH
Confidence 2 22233334567889999988 6999988998888899999999999999999999988 66666655
Q ss_pred HHHHHhhhcccC-ChhHHHHHHHHHHHhhhc-ccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 322 ASIALMALPIFR-SSNGAIFCSSIALGFLAL-GRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 322 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
..+..+.....+ +.........++.++... ..+.......+ .++++|+++.|+.+...++++.++|.+.|++.+..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 306 SFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 555444333222 222222222222222211 11222233344 45578999999999999999999999999999987
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=292.00 Aligned_cols=387 Identities=13% Similarity=0.102 Sum_probs=273.4
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHH-HHHhh--CCCccchhhhh-----hhhhhhhhhhcccccccccccCchHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTA-AADAA--GVNQSSKGTIL-----STFYYGYACSQVPGGWAAQKIGGRKVL 77 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~g~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~l 77 (439)
+++.......++.+++++|...++.+.|. +.+++ +.++. .+++. ++..++..+++++.|+++||+|||+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l 97 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence 45567778888999999999999988875 55555 56665 45554 345566788999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcchHH--------HHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHH
Q 013609 78 LFSFVLWSSTCFWLKLDPNNVF--------ILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAM 149 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 149 (439)
..+.++++++++++++++ |++ .+++.|+++|++.|..++....++.|++|+|+|++..+....+..+|..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 98 MLTVWMMGIATALIGLLP-SFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999998 876 58899999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhh--------cccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhcccccc
Q 013609 150 GMLFLPSLV--------KYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSA 221 (439)
Q Consensus 150 g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (439)
+..+...+. +.+|||++|++.+++.++. +......||+|++.+++.+.+ +
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~---------------------~ 234 (438)
T PRK09952 177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQA---------------------A 234 (438)
T ss_pred HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhcc---------------------c
Confidence 887766654 2579999999887765443 222334456554321110000 0
Q ss_pred ccccCchHHhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhh
Q 013609 222 MKAAKIPWKRIVVNLPVWAIVV-NNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300 (439)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 300 (439)
.+++....+.+.++|+.+.... ..++.....+....+.|.|+++.+|++...........++...++.++.|+++||++
T Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~g 314 (438)
T PRK09952 235 AKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFG 314 (438)
T ss_pred ccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0001111234667777666543 455566677788899999998888988776555555667777888899999999999
Q ss_pred hccccchhhhhHHHHHHHHHHHHHHHhhhc--c-cCChhHH-HHHHHHHHHhhhcccccccccccccCC-ChhhHHHHHH
Q 013609 301 TKRILSVTRTRKFLNTVGFMVASIALMALP--I-FRSSNGA-IFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGIS 375 (439)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~ 375 (439)
||+ ....+.++..+....+. . ..+.... ....++.....+...+.......|..| +.|+++.|+.
T Consensus 315 rr~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~ 384 (438)
T PRK09952 315 RRR----------VYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVG 384 (438)
T ss_pred chH----------HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHH
Confidence 988 55555444433322111 1 1222222 222222222222223334455556555 7899999997
Q ss_pred HHHhh-hhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 376 NTAGT-LAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 376 ~~~~~-~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
+.... +++.++|.+.+++.|..+ ++|...+.+.+++.+++.+..+..++++
T Consensus 385 ~~~~~~lgg~~~p~i~g~l~~~~~---------~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 385 YQVASVVGGGFTPFIAAALVTYFG---------GSWHSVAIYLLAGCLISAMTALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---------CCchHHHHHHHHHHHHHHHHHHHccccc
Confidence 66654 899999999999998651 2578888888888888877777665543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=302.66 Aligned_cols=376 Identities=16% Similarity=0.191 Sum_probs=297.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHH
Q 013609 9 LIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTC 88 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 88 (439)
+.+..++++.++..++....++..|.+.+|+|.+.++.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHH
Q 013609 89 FWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFN 168 (439)
Q Consensus 89 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~ 168 (439)
+++++++ |++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+.++.+||+.|+
T Consensus 82 ~~~~~~~-~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~ 160 (485)
T TIGR00711 82 LLCGVAP-NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL 160 (485)
T ss_pred HHHhCcC-CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence 9999997 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhhhccCCCCCCCCCCCcccc---------------cCccCcccchhh-------------hhccccc
Q 013609 169 AEAALGGMWSLLWFKYATDPPRSEHPKASAAGF---------------GESLLPMRDQKV-------------KVDNGGS 220 (439)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~-------------~~~~~~~ 220 (439)
+.+.++++..++..+..||++++.+++.|..+. ..++.++.+... .....+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (485)
T TIGR00711 161 INVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL 240 (485)
T ss_pred hhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 998888777666666666654433222221110 000000000000 0000011
Q ss_pred cccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhh
Q 013609 221 AMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300 (439)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 300 (439)
+.+++..+ .+++|+|+++...+..++.....+....++|.|+++.+|+++.+++....+..++.+++.++.|++.||++
T Consensus 241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~ 319 (485)
T TIGR00711 241 TDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKID 319 (485)
T ss_pred cCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 11222223 46889999998888888888888889999999999989999999999999999999999999999999999
Q ss_pred hccccchhhhhHHHHHHHHHHHHHHHhhhcc--cC--ChhHHH-HHHHHHHHhhhcccccccccccccCCChhhHHHHHH
Q 013609 301 TKRILSVTRTRKFLNTVGFMVASIALMALPI--FR--SSNGAI-FCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGIS 375 (439)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 375 (439)
+|+ ....+..+.+++...+.. .+ +..... ...+.+.+.+....+......++.+++++++++|+.
T Consensus 320 ~~~----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 389 (485)
T TIGR00711 320 PRK----------LVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLS 389 (485)
T ss_pred cHH----------HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHH
Confidence 988 777777777766665542 12 112222 223334444333344445555667779999999999
Q ss_pred HHHhhhhHHHHHHHHHHhhcc
Q 013609 376 NTAGTLAGIVGVDMTGKLLEA 396 (439)
Q Consensus 376 ~~~~~~g~~i~~~~~g~l~~~ 396 (439)
+..+++|+.+|+.+.+.+.++
T Consensus 390 ~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 390 NFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=293.19 Aligned_cols=368 Identities=18% Similarity=0.243 Sum_probs=277.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCc
Q 013609 16 ISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDP 95 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 95 (439)
++++..+.++..+++..|.+.+++|.++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHh-hhhhhhhcccCCchhHHHHhHHH
Q 013609 96 NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGM-LFLPSLVKYNGPNSVFNAEAALG 174 (439)
Q Consensus 96 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~~wr~~f~~~~~~~ 174 (439)
+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+++.+.+..+||+.|++.+++.
T Consensus 82 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (379)
T TIGR00881 82 -SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA 160 (379)
T ss_pred -hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 57777777889999999998888
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHH
Q 013609 175 GMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYV 254 (439)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (439)
++..++.++..||+|++++.+.++++..++. +.. +++.+++.+......++++++|.++...+..++.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (379)
T TIGR00881 161 IIVSLICFLLLRDSPQSCGLPPAEEMPNEEP-DGD-----AEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTG 234 (379)
T ss_pred HHHHHHHheeeCCCccccccCccccCccccc-ccc-----cccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 7766666667777665432211111110000 000 0000011112223456788999999998888888888889
Q ss_pred HHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccC-
Q 013609 255 LMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFR- 333 (439)
Q Consensus 255 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 333 (439)
...+.|.|+++..|+++.+.+.......++.+++.++.+++.||..+++ +.....................+
T Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 307 (379)
T TIGR00881 235 ILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR-------RGPLAVFFMALIIVSLLVYWLNPA 307 (379)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999889999999999999999999999999999999875444 11122222222222222222211
Q ss_pred ChhHHHHHHHHHHHhhh-ccccccccc-ccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 334 SSNGAIFCSSIALGFLA-LGRAGFAVN-HMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 334 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
..........+..+... ...+..... .+..++++|+++.|+.+...++|+.++|.+.|.+.|..
T Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 373 (379)
T TIGR00881 308 ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF 373 (379)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence 11112222222222221 111222233 34455689999999999999999999999999999987
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=287.03 Aligned_cols=366 Identities=14% Similarity=0.118 Sum_probs=280.8
Q ss_pred HHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHH-HHHHHHHHHhhhcC
Q 013609 16 ISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLF-SFVLWSSTCFWLKL 93 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~ 93 (439)
+.+++..+......+.+|. +.+++|.|+.+.|++.+.+.+...+.+++.|+++||+||||.++. +..+..++..++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 4467777788888888887 568899999999999999999999999999999999999887654 56666677788888
Q ss_pred CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchh--hHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHh
Q 013609 94 DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRS--VSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEA 171 (439)
Q Consensus 94 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~ 171 (439)
++ |++.+++.|+++|.+.+...|...++..|+.|+++|++. .+....+.++|..++|++++.+.+..+||+.|++.+
T Consensus 84 ~~-~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~ 162 (375)
T TIGR00899 84 NR-NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA 162 (375)
T ss_pred cc-hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence 87 999999999999988888889999999999887777654 578888889999999999999999899999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHH
Q 013609 172 ALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYA 251 (439)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (439)
+..++..+..++..||+|++++++. ...+.++.+++|+++......++....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (375)
T TIGR00899 163 LAFVLCGVLVWLFLPSYPRGAPGAL----------------------------TRLEVRGLLASRDTRLLFVACTLMWGC 214 (375)
T ss_pred HHHHHHHHHHHHhCCCcccCccccc----------------------------CcchhhhhhcCcchHHHHHHHHHHHHH
Confidence 8877777666666777654321100 011223466777777666666655555
Q ss_pred HHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 013609 252 LYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPI 331 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
......+.|.++++.+|.++.+.+.+.........++..+.+++.||+++|+ ....+.+...+.......
T Consensus 215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~----------~~~~~~~~~~~~~~~~~~ 284 (375)
T TIGR00899 215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR----------LMLLAALAGVAFYTGLAA 284 (375)
T ss_pred HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh----------HHHHHHHHHHHHHHHHHH
Confidence 5666778899998889999999988877777778888899999999999988 555555554444444433
Q ss_pred cCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccch
Q 013609 332 FRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWR 411 (439)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~ 411 (439)
.++.+.......+.....+...+.......+..|++++++.++.+...++|..++|.+.|.+.|.. +|+
T Consensus 285 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-----------g~~ 353 (375)
T TIGR00899 285 DNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERW-----------SYH 353 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cch
Confidence 333333332222222222223334445566777888889999999999999999999999999987 799
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 013609 412 AVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~ 431 (439)
..+.+.+++.+++.+...++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 354 AVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred hHHHHHHHHHHHHHHHHhee
Confidence 99999988888887776554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=291.89 Aligned_cols=403 Identities=18% Similarity=0.260 Sum_probs=290.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHH
Q 013609 7 RYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSS 86 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 86 (439)
++..+....+.+...+.++..+....|.+.+ +|.|+++.+++.+++.++..+++++.|+++||+|||+.+..+.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 4556666777788888888888888888776 599999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCc---chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc-ccC
Q 013609 87 TCFWLKLDP---NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK-YNG 162 (439)
Q Consensus 87 ~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~ 162 (439)
+.+++++.+ ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++.+.+..+|..+++.+.+...+ ..+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 183 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND 183 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence 988877642 2678888999999999999999999999999999999999999999999999999887765444 579
Q ss_pred CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCch-HHhhhcchhHHHH
Q 013609 163 PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIP-WKRIVVNLPVWAI 241 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 241 (439)
||+.|++.++++++..+..+++.||+|++...+..++. +.+.+.... ++ ++++.+.++. .+.++|+|.+|..
T Consensus 184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~ 256 (438)
T TIGR00712 184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY--RNDYPDDYN----EK-AEQELTAKEIFMQYVLPNKLLWYI 256 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc--ccccccccc----cc-cccccchHHHHHHHHccCchHHHH
Confidence 99999999988887766666677776654311110000 000000000 00 0000111111 2347889999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHH
Q 013609 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMV 321 (439)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 321 (439)
.+..++.+...++...+.|.|+++..|+++.+++....+..+..++++++.|++.||+++++. ..........
T Consensus 257 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~-------~~~~~~~~~~ 329 (438)
T TIGR00712 257 AIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR-------GATGVFFMTL 329 (438)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-------cHHHHHHHHH
Confidence 888888888888889999999999889999999998889999999999999999999975541 0111111111
Q ss_pred HHHHHhhhccc--CChhHHHHHHHHHHHhhhcccccc-cccc-cccCCChhhHHHHHHHHHhhhhH-HHHHHHHHHhhcc
Q 013609 322 ASIALMALPIF--RSSNGAIFCSSIALGFLALGRAGF-AVNH-MDIAPRYAGIVMGISNTAGTLAG-IVGVDMTGKLLEA 396 (439)
Q Consensus 322 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~g~~~~~~~~g~-~i~~~~~g~l~~~ 396 (439)
..++...+... .+.... ....+..+.....+... .... +..++++|++++|+.+...++++ .++|.+.|.+.|.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~ 408 (438)
T TIGR00712 330 VTIAVIVYWMNPAGNPLVD-MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 408 (438)
T ss_pred HHHHHHHHHhcCCCchHHH-HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh
Confidence 11111111111 122221 12222222222221111 1223 34455899999999999988875 6899999999998
Q ss_pred ccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCc
Q 013609 397 AKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
. +|+.++.+..++.+++.+..+.+.++||
T Consensus 409 ~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 409 F-----------GWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred c-----------cchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7 7999999888888888887777777665
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=285.12 Aligned_cols=378 Identities=16% Similarity=0.122 Sum_probs=279.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHH
Q 013609 9 LIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTC 88 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 88 (439)
+.+....++.++.........+..+.+.+|+|.|+++.|++.+.+.+++.++.++.|+++||+||||++..+..+.+++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~ 92 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH 92 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 34555566666666666666667777889999999999999999999999999999999999999999999999998887
Q ss_pred hhh---cCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHH-HHHhhhhhhhhcccCCc
Q 013609 89 FWL---KLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGA-AMGMLFLPSLVKYNGPN 164 (439)
Q Consensus 89 ~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~~wr 164 (439)
+++ +....+++.+++.|+++|++.+...+...+.+.|++|+|+|++++|+.+...++|. .++|.+++.+.+..||+
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~ 172 (402)
T TIGR00897 93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM 172 (402)
T ss_pred HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence 654 34322788999999999999888888888889999999999999999999999997 68999999998888977
Q ss_pred hhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHH
Q 013609 165 SVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVN 244 (439)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (439)
..++.......+..++..+..+|.+++++++ + + ++.++..+++++++|+|+++...+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (402)
T TIGR00897 173 NTLWSALAFVLTGGVIALFSNKDIFTPQHMQ-T-R--------------------EKFSELGKAATILFTNPNVLLGGMV 230 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCccccc-C-C--------------------cchhhHHHHHHHHHcChhHHHHHHH
Confidence 6666554443333333444444432211110 0 0 0001112345678999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHH-HHHHHHHH
Q 013609 245 NFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLN-TVGFMVAS 323 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~-~~~~~~~~ 323 (439)
.++.....+....+.|.|+++ +|+++.+.+.+.....++..++.+..|+++||+++|+ .. ..+.+..+
T Consensus 231 ~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~----------~~~~~~~l~~~ 299 (402)
T TIGR00897 231 RIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN----------TVRWFGGVGCG 299 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh----------HHHHHHHHHHH
Confidence 888888888899999999977 8999999888888889999999999999999999877 22 22222222
Q ss_pred HHHhh---hcc--cCChhHH-HHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 324 IALMA---LPI--FRSSNGA-IFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 324 ~~~~~---~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
+.... ... .++.... ......+.+.... .+ ......+.+|++|+++.|+.+...++++.++|.+.|.+.|..
T Consensus 300 ~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~ 377 (402)
T TIGR00897 300 IFTLALYYIPQHFGHSFAVALIIAIALGIFLAGY-VP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF 377 (402)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH-HH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22111 111 1222222 2223333333332 22 233445678889999999999999999999999999999988
Q ss_pred cccccCCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 398 KTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
++...+++.+++.+++.+...+++
T Consensus 378 -----------g~~~~~~~~a~~~~i~~~~~~~~~ 401 (402)
T TIGR00897 378 -----------GAIGVVWIFAALYVVSAFLTAFIR 401 (402)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHhc
Confidence 788899988888888777666553
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=296.30 Aligned_cols=415 Identities=14% Similarity=0.122 Sum_probs=282.1
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh-----CCCccchhhhhhhhhhhhhhhcccccccccccCchHHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAA-----GVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLL 78 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~ 78 (439)
.+.++..+.++.++.+.+++|....+.+.|.+.+++ +.+..+.+++.+.+.+++.++++++|+++||+|||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~ 90 (502)
T TIGR00887 11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG 90 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 345677788889999999999999999999887753 344557789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCcch------HHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhh
Q 013609 79 FSFVLWSSTCFWLKLDPNN------VFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGML 152 (439)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 152 (439)
++.++..++.+++++++ + ++.++++|+++|++.|...+....+++|++|+++|++++++.+....+|..+++.
T Consensus 91 ~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~ 169 (502)
T TIGR00887 91 MELIIMIIATVASGLSP-GSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI 169 (502)
T ss_pred HHHHHHHHHHHHHHHcc-CcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988876 4 7899999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhc-----------------------ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCccc-ccCcc---
Q 013609 153 FLPSLVK-----------------------YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAG-FGESL--- 205 (439)
Q Consensus 153 ~~~~l~~-----------------------~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 205 (439)
++..+.. .++||+.|.+.++++++..+. .++.||+|++...++++++ ..+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~~~~~~~a~~~~~~~ 248 (502)
T TIGR00887 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADVAKDVEQAASDMSAV 248 (502)
T ss_pred HHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence 8765432 247999998887776654444 4577999997543333221 11000
Q ss_pred -Ccccchhhhh-ccccccccccCchHHhhhcc---hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccch
Q 013609 206 -LPMRDQKVKV-DNGGSAMKAAKIPWKRIVVN---LPV----WAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGS 276 (439)
Q Consensus 206 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (439)
.+..++..++ ++.++++++...++++++++ ++. +......+.....+++...+.|.++++ .|+++.+.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~ 327 (502)
T TIGR00887 249 LQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATN 327 (502)
T ss_pred hccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccch
Confidence 0000000000 00000011112356666653 222 112223344455566777788999976 7887654321
Q ss_pred ------------hhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccC---ChhHHHHH
Q 013609 277 ------------SKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFR---SSNGAIFC 341 (439)
Q Consensus 277 ------------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 341 (439)
......++.+++.++.+++.||+|||+ +...+..+.+++...+.... +.......
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~----------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 397 (502)
T TIGR00887 328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKP----------IQLMGFFILTVLFFVLGFAYNHLSTHGFLAI 397 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh----------HHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 123344566778889999999999998 66666655555444433211 11111122
Q ss_pred HHHHHHhh-hcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHH
Q 013609 342 SSIALGFL-ALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGL 419 (439)
Q Consensus 342 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (439)
..+...+. ....+....+..|..| +.|+++.|+.+.+.+++++++|.+.+.+.|..+..+. .+...++...+.+.++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~ 476 (502)
T TIGR00887 398 YVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKG-YPTGIWMGHVLEIFAL 476 (502)
T ss_pred HHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccc-ccccccchHHHHHHHH
Confidence 22222222 2223344455567766 7899999999999999999999999999885411100 0000245667888888
Q ss_pred HHHHHHHHHHHhc
Q 013609 420 LCILSSFVFLLFS 432 (439)
Q Consensus 420 ~~~~~~~~~~~~~ 432 (439)
+++++.+..++++
T Consensus 477 ~~~~~~i~~~~lp 489 (502)
T TIGR00887 477 FMFLGILFTLLIP 489 (502)
T ss_pred HHHHHHHHheEec
Confidence 8777766655444
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=285.35 Aligned_cols=346 Identities=15% Similarity=0.130 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhh
Q 013609 12 ILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWL 91 (439)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 91 (439)
..+....++...+...+.+..|.+.+|+|.|+++.+++.+++.++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 87 (385)
T TIGR00710 8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL 87 (385)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 33444456667788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHh
Q 013609 92 KLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEA 171 (439)
Q Consensus 92 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~ 171 (439)
++++ +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.++.+||+.|++.+
T Consensus 88 ~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 166 (385)
T TIGR00710 88 ALSN-NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLS 166 (385)
T ss_pred HHHc-cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9996 999999999999999999999999999999999999999999999999999999999999999899999999988
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHH
Q 013609 172 ALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYA 251 (439)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (439)
+..++..+..++..||++++++++ +.++..+++++.+|+|+++...+........
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (385)
T TIGR00710 167 LAGILLSALIFFILPETLPYEARI-------------------------QISTYFETFLLLLKSKMFWGYALIYGASFGG 221 (385)
T ss_pred HHHHHHHHHHHHhCCCCCCCcccC-------------------------CHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 887776666665666654332110 0011223456788999998888777777777
Q ss_pred HHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 013609 252 LYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPI 331 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
......+.|.++++.+|.++.+.+.+.....++.+++.++.+++.||+++|+ ....+..+..++...+..
T Consensus 222 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 291 (385)
T TIGR00710 222 FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS----------LLRMGLILFAVSAVLLEI 291 (385)
T ss_pred HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH----------HHHHHHHHHHHHHHHHHH
Confidence 7788888899998889999999999999999999999999999999999888 555455444444333322
Q ss_pred c---C-ChhHHHHHHH--HHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhh
Q 013609 332 F---R-SSNGAIFCSS--IALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLL 394 (439)
Q Consensus 332 ~---~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 394 (439)
. . +......... .+.+... ..+.......+..|++++++.++.+...+.++.+.+.+.+.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~ 359 (385)
T TIGR00710 292 TAILGLGSWAMIIGPMMFVGIGNSM-ISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIH 359 (385)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 1 1122222211 2222222 2233344445556788999999999998887777777777443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=285.02 Aligned_cols=356 Identities=13% Similarity=0.111 Sum_probs=249.1
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhh-hhh-----hhhhhhhcccccccccccCchHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTIL-STF-----YYGYACSQVPGGWAAQKIGGRKVL 77 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~-s~~-----~~~~~~~~~~~g~l~dr~Grr~~l 77 (439)
+..|++....++++.+++++|+..+++..|.+.+|++.++.+.+... +.. .++..+++++.|+++||+|||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 10 RESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 34566678889999999999999999999999999999888865443 332 222346889999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcchHH--------HHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHH
Q 013609 78 LFSFVLWSSTCFWLKLDPNNVF--------ILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAM 149 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 149 (439)
+.+.+++.++++++++++ +++ .++++|+++|++.+...+....+++|++|+|+|++++++...+..+|..+
T Consensus 90 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVP-GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF 168 (434)
T ss_pred HHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH
Confidence 999999999999999997 776 46899999999999999999999999999999999999999988888888
Q ss_pred Hhhhhhhhh--------cccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhcccccc
Q 013609 150 GMLFLPSLV--------KYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSA 221 (439)
Q Consensus 150 g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (439)
++.+++.+. +.+|||++|++......+ ........||+++..++ ++
T Consensus 169 g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~-------------------------~~ 222 (434)
T PRK15075 169 AALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-IFLIRRSLEETEEFLAR-------------------------KH 222 (434)
T ss_pred HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHh-------------------------hh
Confidence 887777652 468999999875443211 11111111221110000 00
Q ss_pred ccccCchHHhhhcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhh
Q 013609 222 MKAAKIPWKRIVVNLPVWAI-VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300 (439)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 300 (439)
+.+.++.+++..++++.+.. ....++....++....|.|.|+++.+|++..+.++......++.+++.++.|+++||++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g 302 (434)
T PRK15075 223 RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIG 302 (434)
T ss_pred ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00111223344555555443 33344456667788899999999888999999888888888999999999999999999
Q ss_pred hccccchhhhhHHHHHHHHHHHHHHH-hh---hcccCChhHHHH-HHHHHHHhhhcccccccccccc-cCCChhhHHHHH
Q 013609 301 TKRILSVTRTRKFLNTVGFMVASIAL-MA---LPIFRSSNGAIF-CSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGI 374 (439)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~ 374 (439)
||+ ....+..+..... .. ....++...... ..+.+.+.+. ..+.......| .|++.|+++.|+
T Consensus 303 ~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~ 371 (434)
T PRK15075 303 RRP----------VLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSL 371 (434)
T ss_pred chH----------HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeH
Confidence 888 4444333222211 11 111112211212 2222222222 22222333344 555899999999
Q ss_pred HHHHhhh-hHHHHHHHHHHhhccc
Q 013609 375 SNTAGTL-AGIVGVDMTGKLLEAA 397 (439)
Q Consensus 375 ~~~~~~~-g~~i~~~~~g~l~~~~ 397 (439)
.+..... ++.++|.+.|++.|..
T Consensus 372 ~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 372 AYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhc
Confidence 7665554 5888999999999987
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=291.20 Aligned_cols=379 Identities=14% Similarity=0.132 Sum_probs=289.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHH
Q 013609 8 YLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSST 87 (439)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 87 (439)
.+.+..++++.++..++...+.+..|.+.+|+|.++.+.+++.+.+.++..++.+++|+++||+|||+++..+..+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhH
Q 013609 88 CFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167 (439)
Q Consensus 88 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f 167 (439)
.+++++++ +++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+.++.+||+.|
T Consensus 89 ~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f 167 (471)
T PRK10504 89 SLFCALSG-TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIF 167 (471)
T ss_pred HHHHHHhC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHH
Confidence 99999987 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccc---------------cCccCcccchh------------hhhccccc
Q 013609 168 NAEAALGGMWSLLWFKYATDPPRSEHPKASAAGF---------------GESLLPMRDQK------------VKVDNGGS 220 (439)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~------------~~~~~~~~ 220 (439)
++..+...+..+......|+.+.+. .+.|.... ..+........ .....++.
T Consensus 168 ~~~~~~~~l~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (471)
T PRK10504 168 LINIPVGIIGAIATLMLMPNYTMQT-RRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHAR 246 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccC-CCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988777766665555555443322 12121100 00000000000 00000011
Q ss_pred cccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhh
Q 013609 221 AMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300 (439)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 300 (439)
+.+++..+ .+++|||+++......++..........+.|.|+++..|.++.+.++......++.+++.++.+++.||++
T Consensus 247 ~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g 325 (471)
T PRK10504 247 NNNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFG 325 (471)
T ss_pred cCCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11222334 35889999999888888888887777888999999888999999999888888888888899999999999
Q ss_pred hccccchhhhhHHHHHHHHHHHHHHHhhhcccC--ChhHHH--HHHHHHHHhhhcccccccccccccCCChhhHHHHHHH
Q 013609 301 TKRILSVTRTRKFLNTVGFMVASIALMALPIFR--SSNGAI--FCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISN 376 (439)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 376 (439)
+|+ .+..+..+.++....+...+ +..... ...+.+.+......+......+..++++++.++|+.+
T Consensus 326 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 395 (471)
T PRK10504 326 YRR----------VLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLS 395 (471)
T ss_pred chH----------HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHH
Confidence 988 66666666665544444322 211111 1222223333233333334445566789999999999
Q ss_pred HHhhhhHHHHHHHHHHhhccccc
Q 013609 377 TAGTLAGIVGVDMTGKLLEAAKT 399 (439)
Q Consensus 377 ~~~~~g~~i~~~~~g~l~~~~~~ 399 (439)
...++|..+|+.+.|.+.+..+.
T Consensus 396 ~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 396 MIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999887643
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=293.12 Aligned_cols=407 Identities=14% Similarity=0.142 Sum_probs=277.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh--------CCCccchhhhhhhhhhhhhhhcccccccccccCchHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAA--------GVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVL 77 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 77 (439)
.....+....++.+.++++...+++..|.+.+++ +.++.+.+++.+++.++..++++++|+++||+|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~ 88 (479)
T PRK10077 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3456677778889999999999999999999887 78889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCC---------c--chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHH
Q 013609 78 LFSFVLWSSTCFWLKLD---------P--NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLG 146 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~---------~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 146 (439)
.++.+++.++.+.++++ + ++++.++++|+++|++.|...+...++++|++|+|+|++++++.+.+..+|
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 168 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG 168 (479)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHH
Confidence 99999999888877753 1 136778999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhh--------cccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccC---ccCcccchhhhh
Q 013609 147 AAMGMLFLPSLV--------KYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGE---SLLPMRDQKVKV 215 (439)
Q Consensus 147 ~~~g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 215 (439)
..+++.++..+. +..|||+.|++.+++.++..+. .++.||+|++...+.+.++..+ +.....+.....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (479)
T PRK10077 169 QLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQAL 247 (479)
T ss_pred HHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHH
Confidence 999988766543 3579999999988877776544 4567888765322222111100 000000000000
Q ss_pred ccccccccccCchHHhhhcchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHH
Q 013609 216 DNGGSAMKAAKIPWKRIVVNLPVWA---IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIG 292 (439)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 292 (439)
++.....++.....+..+....... .....+......+....+.|.+.++ .|.+..+........++..+++.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~ 326 (479)
T PRK10077 248 QEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLA 326 (479)
T ss_pred HHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000001111000000 1111122222334455667877766 78887777777777888899999999
Q ss_pred HHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhccc---CChh-HHH-HHHHHHHHhhhcccccccccccccCC-C
Q 013609 293 GVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIF---RSSN-GAI-FCSSIALGFLALGRAGFAVNHMDIAP-R 366 (439)
Q Consensus 293 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 366 (439)
+++.||+++|+ +...+..+.+++.+.+... +... ... .......++.....+.......|..| +
T Consensus 327 g~l~dr~g~r~----------~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 396 (479)
T PRK10077 327 IMTVDKFGRKP----------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 396 (479)
T ss_pred HHHHHHhcChH----------HHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh
Confidence 99999999998 7777777776666554322 1111 111 12222222322223445555666555 7
Q ss_pred hhhHHHHHHHHHhhhhHHHHHHHHHHhh------ccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 367 YAGIVMGISNTAGTLAGIVGVDMTGKLL------EAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 367 ~~~~~~g~~~~~~~~g~~i~~~~~g~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
+|+++.|+.+...+++..+++.+.+.+. |.. ++...|++.++.++++.++.+.+.+++
T Consensus 397 ~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 397 IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF-----------HNGFSYWIYGCMGVLAALFMWKFVPET 460 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc-----------cCccHHHHHHHHHHHHHHHHHhccccC
Confidence 9999999999999999999988877555 333 567778887777777766665554443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=277.86 Aligned_cols=374 Identities=13% Similarity=0.111 Sum_probs=285.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHH-hhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHH
Q 013609 8 YLIVILTFISTCVCYIERVGFSIAYTAAAD-AAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSS 86 (439)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 86 (439)
++.+....++.++.+......+++.+.+.+ |+|+|++|.+++.+++.+++.+..++.|++.||+|.|+++.++.++.++
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 467888888999999999999999999876 8999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCC-----cchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhh---
Q 013609 87 TCFWLKLD-----PNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLV--- 158 (439)
Q Consensus 87 ~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--- 158 (439)
.++..+++ + |++.+++.|++.|++ +..++.....+++|+|+|+||+++|+.....++|..+++++.+.+.
T Consensus 113 ~~~~~~~a~~~~~~-s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~ 190 (462)
T PRK15034 113 PCVWLGIAVQNPNT-PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP 190 (462)
T ss_pred HHHHHHHHHcccCC-CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999876 6 899999999999998 6688999999999999999999999997777777776666554433
Q ss_pred --c-------------ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhcccccccc
Q 013609 159 --K-------------YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMK 223 (439)
Q Consensus 159 --~-------------~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (439)
+ ..+||.+.++..++.++..++.++..+|.++. +
T Consensus 191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-------------------------------~ 239 (462)
T PRK15034 191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-------------------------------R 239 (462)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-------------------------------c
Confidence 2 23477777788877777666666665443321 1
Q ss_pred ccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 013609 224 AAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKR 303 (439)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 303 (439)
....+..+++|+|+.|..++.+++.+..+.++..++|.|.++.+ +.........+..+...+.++++|+++||+|+++
T Consensus 240 ~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~ 317 (462)
T PRK15034 240 ASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR 317 (462)
T ss_pred cCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH
Confidence 11234567999999999999999999999999999999998854 3333322234456778888999999999999998
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHhh-hcccC-----ChhHHHHHHHHHHHhhhcccccccccccccCC------------
Q 013609 304 ILSVTRTRKFLNTVGFMVASIALMA-LPIFR-----SSNGAIFCSSIALGFLALGRAGFAVNHMDIAP------------ 365 (439)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 365 (439)
++..+.+...+.... +...+ +.......++..+...+.......-......|
T Consensus 318 ----------vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~ 387 (462)
T PRK15034 318 ----------VTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG 387 (462)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence 666666544444322 11111 11222222222222223333333322222222
Q ss_pred ----------ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 366 ----------RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 366 ----------~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
++.|.+.|+....+.+|+.+-|.+.|...+.. +++...|+.+.+..+++..+.+....++
T Consensus 388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~----------g~~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT----------GSPVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc----------CCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 16789999999999999999999999999888 5899999999999999888887765544
Q ss_pred c
Q 013609 436 R 436 (439)
Q Consensus 436 ~ 436 (439)
+
T Consensus 458 ~ 458 (462)
T PRK15034 458 K 458 (462)
T ss_pred C
Confidence 3
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=279.56 Aligned_cols=366 Identities=13% Similarity=0.092 Sum_probs=275.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHh
Q 013609 10 IVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCF 89 (439)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 89 (439)
.+..+.++.++...+.....+.+|.+.+|+|.|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~ 86 (381)
T PRK03633 7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA 86 (381)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHH
Q 013609 90 WLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNA 169 (439)
Q Consensus 90 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~ 169 (439)
.+++++ |++.+++.|+++|++.+...+...+.+.|..++++|+++++....+.++|..+|+.+++.+.+...|+..+ .
T Consensus 87 ~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~-~ 164 (381)
T PRK03633 87 GLGLMV-GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW-V 164 (381)
T ss_pred HHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH-H
Confidence 999997 99999999999999999888888888889999999999999999999999999999999987754444333 3
Q ss_pred HhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHH
Q 013609 170 EAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFH 249 (439)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (439)
.+........+.+ . +.++++. + + ++..+.++.+|+|.++......+...
T Consensus 165 ~~~~~~~~~~~~~-~-~~~~~~~-~-------------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (381)
T PRK03633 165 TGLVLAAILPLLF-T-RILNQQA-E-------------------------N---HDSTSIWPMLKLRQARLGVNGCIISG 213 (381)
T ss_pred HHHHHHHHHHHHH-h-cccCCCC-C-------------------------C---CCCCCHHHHHHhcchHHHHHHHHHHH
Confidence 2222222221221 1 1111111 0 0 01123456778888776555455555
Q ss_pred HHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhh
Q 013609 250 YALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMAL 329 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
..+.....++|.|+++ .|.++.+.+.+.+...+..++++...+++.||+++|+ .+..+..+..++....
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~----------~l~~~~~~~~~~~~~~ 282 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL----------VLRVQVFVVILGSIAM 282 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH----------HHHHHHHHHHHHHHHH
Confidence 5666677889999987 6999999998888889999999999999999999988 6666666655554433
Q ss_pred cccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCccc
Q 013609 330 PIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPES 409 (439)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~ 409 (439)
. ..........+.+.+.....+.......+..++++++...+..+...++|+.++|.+.|.+.|+. +
T Consensus 283 ~--~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-----------g 349 (381)
T PRK03633 283 L--SQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-----------S 349 (381)
T ss_pred h--hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------C
Confidence 2 11222222222332222223222233344455567788888888889999999999999999988 7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhc
Q 013609 410 WRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
++..|.+.+.+.++..+..++.+
T Consensus 350 ~~~~f~~~~~~~l~~~~~~~~~~ 372 (381)
T PRK03633 350 DNLLFIMIASVSFIYLLMLLRKA 372 (381)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcc
Confidence 88899888888776665555443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=278.70 Aligned_cols=372 Identities=16% Similarity=0.160 Sum_probs=275.6
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
+.++.+..+.+..++..++.....+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~ 91 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC 91 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence 44556677888889999999999999997 67889999999999999999999999999999999999999999999988
Q ss_pred HHHHhhhcCC---c----chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhh
Q 013609 85 SSTCFWLKLD---P----NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSL 157 (439)
Q Consensus 85 ~~~~~~~~~~---~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 157 (439)
+++.+.++++ + .+++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+....+|..+|+.+++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l 171 (399)
T PRK05122 92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL 171 (399)
T ss_pred HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence 8776655443 1 15678999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchh
Q 013609 158 VKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLP 237 (439)
Q Consensus 158 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (439)
.+..|||..+++..+..++..+.. ++.|++++++ + ++.++++.++ +
T Consensus 172 ~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~---------------------------~~~~~~~~~~--~ 217 (399)
T PRK05122 172 YHWGGLAGLGLLIMLLALLGLLLA----RPRPAVPPVK-G---------------------------ERLPFRRVLG--R 217 (399)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHH----hcCCCCCCCC-c---------------------------cchhHHHHHH--H
Confidence 999999998887666544332222 1212111000 0 0001222222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHH
Q 013609 238 VWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTV 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 317 (439)
++.......+....+.....+.|.|+++ .|. .+.+.......++.+++.++.+++.||+++|+ ....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~----------~~~~ 284 (399)
T PRK05122 218 VWPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLR----------VAIV 284 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHH----------HHHH
Confidence 2222222333445556677788888876 565 34556667778888999999999999999887 6666
Q ss_pred HHHHHHHHHhhhcccCChhHHHHH-HHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcc
Q 013609 318 GFMVASIALMALPIFRSSNGAIFC-SSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEA 396 (439)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 396 (439)
+..+.+++...+...++.+..... .+.+.+.....+.......++.++++|+++.|+.+...++|..++|.+.|.+.|.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 364 (399)
T PRK05122 285 SLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW 364 (399)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665555544433322 2233333333322223334556678999999999999999999999999999998
Q ss_pred ccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 397 AKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
. +|+..+++.+++.+++.+....+++++
T Consensus 365 ~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 365 F-----------GYPSIFLAAALAALLGLALTWLLYRRA 392 (399)
T ss_pred c-----------CHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7 799999998888888877766665443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=293.59 Aligned_cols=403 Identities=19% Similarity=0.162 Sum_probs=282.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCC--------ccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHH
Q 013609 10 IVILTFISTCVCYIERVGFSIAYTAAADAAGVN--------QSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSF 81 (439)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 81 (439)
....+.++.++..++...+++..|.+.++++.+ ..+.+++.+++.++..++++++|+++||+|||+++..+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~ 108 (481)
T TIGR00879 29 LSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA 108 (481)
T ss_pred HHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Confidence 333445556677788889999999999888877 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcc--hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhh---hh
Q 013609 82 VLWSSTCFWLKLDPN--NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFL---PS 156 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---~~ 156 (439)
++..++.+++.+..+ +++.+++.|+++|++.+...+...++++|++|+++|++++++.+.+..+|..+++.++ ..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~ 188 (481)
T TIGR00879 109 LLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS 188 (481)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999998855432 5668999999999999999999999999999999999999999999999999999998 66
Q ss_pred hhcccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccC--------ccCcccc-h-hhh-hcccccccccc
Q 013609 157 LVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGE--------SLLPMRD-Q-KVK-VDNGGSAMKAA 225 (439)
Q Consensus 157 l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~-~~~-~~~~~~~~~~~ 225 (439)
..+..+||+.|++.++..++.. ...++.||+|+....+.+.++..+ ...+... + ... ....+.+.+..
T Consensus 189 ~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
T TIGR00879 189 LNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSV 267 (481)
T ss_pred CCCCccHHHHHHHHHHHHHHHH-HHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 6677899999999665555444 344556777643211111111000 0000000 0 000 00000000000
Q ss_pred CchHHhhhc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHh
Q 013609 226 KIPWKRIVV------NLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHL 299 (439)
Q Consensus 226 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 299 (439)
...+++.++ .+.++...+..+...........+.|.++++ .|++..+.+.......++.+++.++.+++.||+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 346 (481)
T TIGR00879 268 QPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF 346 (481)
T ss_pred cccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111223332 2333333444444444445566777777766 799988888888888999999999999999999
Q ss_pred hhccccchhhhhHHHHHHHHHHHHHHHhhhc---c--cCC-----hhHH-HHHHHHHHHhhhcccccccccccccCC-Ch
Q 013609 300 ITKRILSVTRTRKFLNTVGFMVASIALMALP---I--FRS-----SNGA-IFCSSIALGFLALGRAGFAVNHMDIAP-RY 367 (439)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 367 (439)
++|+ ....+.++.+++.+.+. . .+. .... ....+...++.....+.......|..| ++
T Consensus 347 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 416 (481)
T TIGR00879 347 GRRP----------LLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL 416 (481)
T ss_pred cchH----------HHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH
Confidence 9988 66666666665555444 1 111 1222 222222333333333445555566555 78
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 368 AGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 368 ~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
|+++.|+.+...+++++++|.+.+.+.+.. ++...|++.+++++++.+..++..+++
T Consensus 417 ~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-----------~~~~~f~~~~~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 417 RPKGISIAVAANWLANFIVGFLFPTMLESI-----------GVGGVFIFFGGLNVLGLIFVYFFLPET 473 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CccceehhHHHHHHHHHHHHheecccC
Confidence 999999999999999999999999999987 788899888888888777776554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=280.24 Aligned_cols=354 Identities=12% Similarity=0.046 Sum_probs=263.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhc
Q 013609 13 LTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLK 92 (439)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 92 (439)
.+.+..+...++...+.+.+|.+.++++.+.++.++..+++.+++.++++++|+++||+|||+++..+.+++++++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~ 99 (413)
T PRK15403 20 ALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL 99 (413)
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 34455666777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhH
Q 013609 93 LDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAA 172 (439)
Q Consensus 93 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~ 172 (439)
+++ |++.++++|+++|++.+...+...+++.|++|+++|++.+++......+|..+||.+++.+.++.|||+.|++.++
T Consensus 100 ~a~-~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~ 178 (413)
T PRK15403 100 FTT-SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAV 178 (413)
T ss_pred HcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 997 9999999999999998877778888999999999999999999999999999999999999988899999999998
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHH
Q 013609 173 LGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYAL 252 (439)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (439)
..++..+..++..||++++++++ .+.++..+++++++|||+++...+..++.....
T Consensus 179 ~~~i~~~~~~~~lp~~~~~~~~~------------------------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~ 234 (413)
T PRK15403 179 MGLIAFVGLLLAMPETVKRGAVP------------------------FSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPM 234 (413)
T ss_pred HHHHHHHHHHHhCCCCccccCCC------------------------CChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 88776665555566654321100 001122345678899999999888888888888
Q ss_pred HHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhccc
Q 013609 253 YVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIF 332 (439)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
+.+..+.|.++++.+|+++.+.++.......+..++..+.+++.+|..+++.. ........++..+...+... ..
T Consensus 235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~~~~~~ig~~l~~~~~~~--~~ 309 (413)
T PRK15403 235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFI---WRAVPIQLVGLALLIVGNLL--WP 309 (413)
T ss_pred HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHH---HHHHHHHHHHHHHHHHHHHH--cc
Confidence 88888899999998899999999988777777778777777765443333300 00001122222222222111 12
Q ss_pred CChhHH-HHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 333 RSSNGA-IFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 333 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
++.... ....+.+.+..... +........-.+..+|++.++.+.....+..+++...+++.+..
T Consensus 310 ~~~~~~~~~~~l~~~G~~~~~-p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~ 374 (413)
T PRK15403 310 HVWLWSVLGTSLYAFGIGLIF-PTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNG 374 (413)
T ss_pred ccHHHHHHHHHHHHHHHHHHh-HHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222111 22222233333322 22221121222235799999999999999999999999887764
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=286.51 Aligned_cols=400 Identities=13% Similarity=0.127 Sum_probs=290.6
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
.++|.++..+.+.......+...++...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus 15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 94 (455)
T TIGR00892 15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA 94 (455)
T ss_pred CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence 45687887777777777777777899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHH-HHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC
Q 013609 85 SSTCFWLKLDPNNVFILVV-ARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 163 (439)
.++++++++++ +++.+++ .|+++|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|++++.+.+.+||
T Consensus 95 ~~~~~~~~~~~-~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gw 172 (455)
T TIGR00892 95 SLGMILASFSS-NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGW 172 (455)
T ss_pred HHHHHHHHHhh-hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCh
Confidence 99999999996 8888865 5799999999777788888999996 7899999999999999999999999999999999
Q ss_pred chhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHH
Q 013609 164 NSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVV 243 (439)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (439)
|+.|++.+++.++..+..++..++++.+...+.+.++..+.+ ...+. .+.....++.++..+ .+++++|+++....
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 248 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPD--GSTKK-LSKKSTAEKINRFLD-FSLFTHRGFLVYLS 248 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCC--Ccccc-ccccchhhhhhhhcc-hHHhcCchHHHHHH
Confidence 999999998877655554444443222110010000000000 00000 000000000111112 25789999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHH
Q 013609 244 NNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVAS 323 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..++...+......++|.|+++ .|+++.+++.+.++.+++.++++++.+++.||...++ .++.....+.+..+
T Consensus 249 ~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~------~~~~~~~~~~~~~~ 321 (455)
T TIGR00892 249 GNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP------HVQYLFSFALLFNG 321 (455)
T ss_pred HHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH------HHHHHHHHHHHHHH
Confidence 8888888888888899999987 7999999999999999999999999999999743221 01123333334334
Q ss_pred HHHhhhcccCChhHHHH-HHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccccc
Q 013609 324 IALMALPIFRSSNGAIF-CSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYS 402 (439)
Q Consensus 324 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~ 402 (439)
+..+.....++.+.... .++.+.+.............+..++++++++.|+.+...++|++++|.+.|.+.|..
T Consensus 322 l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~----- 396 (455)
T TIGR00892 322 LTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT----- 396 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc-----
Confidence 44434444444433332 233333332333333334444566789999999999999999999999999999987
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHH
Q 013609 403 DLSSPESWRAVFFIPGLLCILSSFV 427 (439)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (439)
++|+..|++.+++.+++.+.
T Consensus 397 -----g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 397 -----KNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred -----CCcchHHHHhhHHHHHHHHH
Confidence 46888888887777666553
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=279.43 Aligned_cols=376 Identities=13% Similarity=0.069 Sum_probs=279.4
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
+.....+..+.+..+...+++...++..|.+++++|+|+.+.|+..+.+.+++.+++++.|+++||+|||+++..+..++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34555667778888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh---cCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc-c
Q 013609 85 SSTCFWL---KLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK-Y 160 (439)
Q Consensus 85 ~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~ 160 (439)
+++++++ .+++ +++.++++|+++|+|.+...+..++++.|+.|+++|.+.+++.+....+|..+++.+++.+.. .
T Consensus 102 ~~~~~l~~~~~~a~-~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~ 180 (438)
T PRK10133 102 ALGAALFWPAAEIM-NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999875 5676 999999999999999999999999999998877777778999999999999999998875431 0
Q ss_pred -------------------------cCCchhHHHHhHHHH-HHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhh
Q 013609 161 -------------------------NGPNSVFNAEAALGG-MWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVK 214 (439)
Q Consensus 161 -------------------------~~wr~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (439)
.+||++|+....+.. +..+......||.+++++. +
T Consensus 181 ~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~--~----------------- 241 (438)
T PRK10133 181 VPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS--D----------------- 241 (438)
T ss_pred CcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--c-----------------
Confidence 256666654443333 3222222222332111000 0
Q ss_pred hccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCcccccchhhhhhHHHHHHHHHHHH
Q 013609 215 VDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYF-ELGLQLSLQEMGSSKMMPYLNMFIFSNIGG 293 (439)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 293 (439)
++.++...+.++++|+|.++...+..++..........|.+.|+ ++.+|+++.+++.......++.++++.+.+
T Consensus 242 -----~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g 316 (438)
T PRK10133 242 -----AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_pred -----ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111223456888999988877777777788887888999885 567899999999999999999999999999
Q ss_pred HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHH
Q 013609 294 VVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMG 373 (439)
Q Consensus 294 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 373 (439)
++.||+++|+ .+..+..+....++.....++........+.+++..... |.......+..|++.+++.+
T Consensus 317 ~l~~r~g~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~-P~~~s~a~~~~~~~~~~as~ 385 (438)
T PRK10133 317 WLISRFAPHK----------VLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQY-PTIFSLGIKNLGQDTKYGSS 385 (438)
T ss_pred HHHHHcCHHH----------HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH-HHHHHHHHcccchhhccchh
Confidence 9999999998 666666555555544444433322233334444444444 44444444545666778888
Q ss_pred HHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHH
Q 013609 374 ISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFV 427 (439)
Q Consensus 374 ~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (439)
+.. +...|+.++|++.|.+.|.. ++.+..|++.....+.....
T Consensus 386 l~~-~~~~g~~~~~~i~G~l~~~~----------g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 386 FIV-MTIIGGGIVTPVMGFVSDAA----------GNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHh-HHhccchHHHHHHHHHHHhc----------cchHHHHHHHHHHHHHHHHH
Confidence 876 45678999999999999987 22677777655554444333
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=278.67 Aligned_cols=353 Identities=14% Similarity=0.094 Sum_probs=276.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcC
Q 013609 14 TFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKL 93 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 93 (439)
+..+.++..+......+.+|.+.+|++.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++..+.++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888999999999999999999999999999999999999999999999999999999988888877766
Q ss_pred Cc----chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHH
Q 013609 94 DP----NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNA 169 (439)
Q Consensus 94 ~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~ 169 (439)
++ .+++.+++.|+++|++.+...+...+++.|++|+++|++.+++.+....+|..++|.+++.+.+..+||+.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 163 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV 163 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 52 17999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHH
Q 013609 170 EAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFH 249 (439)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (439)
.++..++..+..+...++++++++++ +.++ +..++..+.+++++|+|.++......+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (365)
T TIGR00900 164 DAVGFAISALLIVSVRIPELAASEIQ-ALSN-------------------AVLRDTREGIKFVLKNPLLRTLLLLALLFN 223 (365)
T ss_pred HHHHHHHHHHHHHhcccccCCCcccc-ccch-------------------hHHHHHHhHHHHHHcCcHHHHHHHHHHHHH
Confidence 87766655444443322221111000 0000 001122334667889999988888777777
Q ss_pred HHHHHHH-HHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhh
Q 013609 250 YALYVLM-NWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMA 328 (439)
Q Consensus 250 ~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (439)
....... .+.|.+.++.+|.++.+.+.......++.+++.++.+++.||.++++ ....+..+.++....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~~ 293 (365)
T TIGR00900 224 LVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA----------LMTGAIFVIGLAILV 293 (365)
T ss_pred HHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH----------HHHHHHHHHHHHHHH
Confidence 7777666 88899998878999999999999999999999999999999998887 666666666666666
Q ss_pred hcccCC-hhHHHHH-HHHHHHhhhcccccccc-cccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 329 LPIFRS-SNGAIFC-SSIALGFLALGRAGFAV-NHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 329 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
....++ .+..... ++.+.+.... .+.... ..+..++|+|+++.|+.+...+++..++|.+.|.+.|..
T Consensus 294 ~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 294 VGLTPPNFPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHhhchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555543 3322222 2223333233 333333 444456689999999999999999999999999999865
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=272.85 Aligned_cols=381 Identities=13% Similarity=0.170 Sum_probs=297.6
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVL 83 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 83 (439)
.+..++.+.++++.+.++..|++.+..+.+.+++.+|+++++.|++.+.+.+.+.+++|++|+++|||.||+++..|..+
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i 107 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI 107 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC-
Q 013609 84 WSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG- 162 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~- 162 (439)
+.++.++++++. .||+++++|.+.|+|.+...|+++++++|.+|.++|++++++++.+..+|..+|.+.+..+.+..+
T Consensus 108 W~~Av~~~~fs~-~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~ 186 (493)
T KOG1330|consen 108 WTLAVFASGFSN-HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW 186 (493)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence 999999999995 999999999999999999999999999999999999999999999999999999999999988665
Q ss_pred CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHH
Q 013609 163 PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (439)
|||.|+..+++++++.++.+++.+|+++...++.+.+... .....+..++.+.+.|+|.+....
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~----------------~~~~ts~~kDl~~l~~~~v~v~~s 250 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM----------------VKPFTSVWKDLKVLAKIKVFVLSS 250 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC----------------CCCccchHHHHHHHHccCceeeeh
Confidence 9999999999999999999989888776533322221110 012233445566777778887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccc-chhhhhHHHHHHH
Q 013609 243 VNNFTFHYALYVLMNWLPTYFEL---GLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRIL-SVTRTRKFLNTVG 318 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~ 318 (439)
+......+....+..|.|.+... ..|++.++..++..+...++.+|.+++|.++||+.++.+. .+..........+
T Consensus 251 l~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g 330 (493)
T KOG1330|consen 251 LGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALG 330 (493)
T ss_pred HHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhh
Confidence 77777777777777777776644 3456667777778888999999999999999998775422 2222233344445
Q ss_pred HHHHHHHHhhhcccCChhH--HHHHHHHHHHhhhcccccc-cccccccCCChhhHHHHHHHHHhhhhHH-HHHHHHHHhh
Q 013609 319 FMVASIALMALPIFRSSNG--AIFCSSIALGFLALGRAGF-AVNHMDIAPRYAGIVMGISNTAGTLAGI-VGVDMTGKLL 394 (439)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~-i~~~~~g~l~ 394 (439)
..+++..+.+.+..+.... .+++++++........... ......++|++|.++.++...+..+.+- -+|++.|.+.
T Consensus 331 ~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGils 410 (493)
T KOG1330|consen 331 APLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILS 410 (493)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHH
Confidence 5555555555554443332 3333333333333443333 3444556789999999999888887664 4555999999
Q ss_pred ccccccc
Q 013609 395 EAAKTTY 401 (439)
Q Consensus 395 ~~~~~~~ 401 (439)
|+....+
T Consensus 411 d~l~g~~ 417 (493)
T KOG1330|consen 411 DKLRGYK 417 (493)
T ss_pred HHhhCCC
Confidence 9874433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=280.85 Aligned_cols=348 Identities=24% Similarity=0.423 Sum_probs=265.4
Q ss_pred HHHHHHHHHHhhhhhHHHHH-HHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhc
Q 013609 14 TFISTCVCYIERVGFSIAYT-AAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLK 92 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 92 (439)
++++.++..++.....+..| .+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++..+..
T Consensus 1 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 1 LFLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence 35677888889999999999 89999999999999999999999999999999999999999999999999999977666
Q ss_pred CCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhH
Q 013609 93 LDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAA 172 (439)
Q Consensus 93 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~ 172 (439)
+++ |++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+...++|..++|.+++.+.+..+||+.|++.++
T Consensus 81 ~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~ 159 (352)
T PF07690_consen 81 FAS-NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI 159 (352)
T ss_dssp HHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred hhh-hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence 655 7779999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCc-hHHhhhcchhHHHHHHHHHHHHHH
Q 013609 173 LGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKI-PWKRIVVNLPVWAIVVNNFTFHYA 251 (439)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 251 (439)
+.++..++...+.++++++++.+.+.++. ++.+++.. .++.+.++|.+|......++....
T Consensus 160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
T PF07690_consen 160 LSLIAAILFILFLPEPPPPRERESPKESE------------------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFV 221 (352)
T ss_dssp HHHHHHHHHHCCC---STTTT--SSTTTT--------------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhHhhhhhhcccccccccccccc------------------cccccccccccccccccchhhhhhhhhhHHHHH
Confidence 98887765444555544443222111110 00122222 367788888887566666666677
Q ss_pred HHHHHHHHHHHHHHhhCCc-ccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhc
Q 013609 252 LYVLMNWLPTYFELGLQLS-LQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALP 330 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
......+.|.|+++.+|.+ ..+.+.......+...++.++.+++.||+++++ +.........+....+....
T Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 294 (352)
T PF07690_consen 222 FSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR-------RLLIAILLLILGALGLLLLP 294 (352)
T ss_dssp HHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHHHHHCCSH
T ss_pred HHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 8889999999988889999 788998899999999999999999999998876 11222333333333333333
Q ss_pred ccCChhHHH-HHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHH
Q 013609 331 IFRSSNGAI-FCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGV 387 (439)
Q Consensus 331 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~ 387 (439)
..++..... ...+.+.+.....+.......+..++|++|++.|+.+...++++.++|
T Consensus 295 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 295 FSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 332223333 333344433333333334444455669999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=274.22 Aligned_cols=369 Identities=14% Similarity=0.100 Sum_probs=266.4
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
+....+..+.++.++.........|.+|. +.+|+|.|+.+.|++.+++.+++.++++++|+++||+||||++..+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~ 91 (392)
T PRK12382 12 SANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLAC 91 (392)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHH
Confidence 33445556667778888888888888886 67899999999999999999999999999999999999999999988877
Q ss_pred HHHHhh---hcC-----CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhh
Q 013609 85 SSTCFW---LKL-----DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPS 156 (439)
Q Consensus 85 ~~~~~~---~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 156 (439)
.++.+. .+. .+ +++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+...|..++|++++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~ 170 (392)
T PRK12382 92 GLAGLAYLLAAILPVSAPF-KFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLL 170 (392)
T ss_pred HHHHHHHHhhhccccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 665543 222 23 789999999999999998889999999999999999999999999999999999999999
Q ss_pred hhcccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcch
Q 013609 157 LVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNL 236 (439)
Q Consensus 157 l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (439)
+.+..|||+.+.+..+..++... ..++.|+.+.++ + +++ +.++..|
T Consensus 171 l~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~-----------------------~~~----~~~~~~~-- 216 (392)
T PRK12382 171 LHSHFGFAALALTTMVLPLLAWA----FNGTVRKVPAHA-G-----------------------ERP----SLWSVVG-- 216 (392)
T ss_pred HHhccChHHHHHHHHHHHHHHHH----HHHhccCCCCCc-c-----------------------cCc----hHHHHHH--
Confidence 99989999877765444333222 112222111000 0 000 1111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHH
Q 013609 237 PVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNT 316 (439)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 316 (439)
.++...+..++..........+.|.|+++ .|.+. .+.......++.+++++..|++.||.++|+ ...
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~----------~~~ 283 (392)
T PRK12382 217 LIWKPGLGLALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVK----------VAI 283 (392)
T ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCe----------ehH
Confidence 11111122233344555667788888877 56543 455566677778889999999999999988 666
Q ss_pred HHHHHHHHHHhhhcccCChhHHHHHHH-HHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhc
Q 013609 317 VGFMVASIALMALPIFRSSNGAIFCSS-IALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395 (439)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 395 (439)
.+..+.+++...+...++......... .+.+.....+.......++.++++|+++.|+.+...++|..++|.+.|.+.|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 284 VSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665555554443333222 2222222222222334455667899999999999999999999999999999
Q ss_pred cccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 396 AAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
.. +|+..|.+.+++.+++.+..+...|
T Consensus 364 ~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (392)
T PRK12382 364 SF-----------GYPSVFLAGAISAVLGIIVTILSFR 390 (392)
T ss_pred Hh-----------CchHHHHHHHHHHHHHHHHHHhhcc
Confidence 88 8999999999888888777765544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=274.27 Aligned_cols=357 Identities=11% Similarity=0.097 Sum_probs=271.4
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVL 83 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 83 (439)
+++.++.+....+...+..+......+.+|.+.+++|.|+.+.+++.+.+.+++.++++++|+++||+|||+++..+..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~ 82 (394)
T PRK11652 3 RQRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSI 82 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHH
Confidence 34455666666666667778888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC
Q 013609 84 WSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 163 (439)
..++...+.+++ +++.+++.|+++|++.+...+....+..|.+++++|+++.+..+.+..++..++|.+++.+.+..||
T Consensus 83 ~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~ 161 (394)
T PRK11652 83 FILGTLVALFAH-SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGW 161 (394)
T ss_pred HHHHHHHHHHHc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 999999999986 9999999999999999888888889999999999999999999999999999999999999988999
Q ss_pred chhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHH
Q 013609 164 NSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVV 243 (439)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (439)
|+.|++.++..++..+...+..||+++++++ +++...++++.+|+|+++...+
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 214 (394)
T PRK11652 162 RACYLFLLLLGAGVTFSMARWMPETRPADAR---------------------------RTRVLASYRTLLSNRRFNCYLL 214 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccCccccc---------------------------hhHHHHHHHHHHcChHHHHHHH
Confidence 9999998887776655555566665432211 0112345677888998887666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHH
Q 013609 244 NNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVAS 323 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..+........+..+.+.++++.+|.++.+.++......++.+++..+.+++.||.+++. .....+.....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---------~~~~~~~~~~~ 285 (394)
T PRK11652 215 MLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM---------WQSVICCLLAG 285 (394)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 666666666666777888998888999999888887777888888888888888887333 12222222222
Q ss_pred HHHhhhccc--CChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 324 IALMALPIF--RSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 324 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
+........ .+.+.......+.....+...+.......+..|++++++.++.+....+|+.+++.+.+.+.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 286 LLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 222222211 12222222222222222333444455555666788999999999999999999999998876543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=279.21 Aligned_cols=377 Identities=20% Similarity=0.228 Sum_probs=273.7
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVL 83 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 83 (439)
+++++..+....+..+...++....++..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 34456667777778888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC
Q 013609 84 WSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 163 (439)
..++.++..+++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+|
T Consensus 92 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 92 FSVFTLLCALAT-NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred HHHHHHHHHHcc-chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999997 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCccccc--Cc-cCcccchhhhhcccccc-ccccCchHHhhhcc---h
Q 013609 164 NSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFG--ES-LLPMRDQKVKVDNGGSA-MKAAKIPWKRIVVN---L 236 (439)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~ 236 (439)
|+.|++.++...+..++.....||+++...++.+++... ++ ..+..++......++++ .++.+...+.++++ +
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR 250 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHH
Confidence 999999877777666666667777665332221110000 00 00000000000000000 11111122223332 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHH
Q 013609 237 PVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNT 316 (439)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 316 (439)
..+...+..++..........+.|.+.+ ..|.++.+.+.......++.+++.++.+++.||+++|+ ...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~ 319 (398)
T TIGR00895 251 ITVLLWLLYFMLLVGVYFLTNWLPKLMV-ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV----------TAL 319 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH----------HHH
Confidence 3444555556666677777888895554 48999999999999999999999999999999998875 443
Q ss_pred HHHHHHHHHHhhhcccCChhHHHHH-HHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHh
Q 013609 317 VGFMVASIALMALPIFRSSNGAIFC-SSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKL 393 (439)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 393 (439)
.................+....... ++.+.+.... .+.......+ .++++|+++.|+.+.+.++|..++|.+.|.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 320 LLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 3333333333332223333333332 3333333333 3334444445 4558999999999999999999999999875
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=275.38 Aligned_cols=377 Identities=15% Similarity=0.119 Sum_probs=281.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccc-----hhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 10 IVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSS-----KGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
....++++.++.........+.+|.+.+|+|.+..+ .|++.+++.++..++.++.|+++||+|||+++..+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 94 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGM 94 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 455667788888888889999999999999998765 488999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCc
Q 013609 85 SSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPN 164 (439)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr 164 (439)
+++..++++.+ +++.+++.|++.|++.+ ..+....++.|++|+++|++++++......+|..++|.+++.+.+..+||
T Consensus 95 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 172 (408)
T PRK09874 95 GIVMVLMGLAQ-NIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLR 172 (408)
T ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 99999888886 99999999999999865 56888889999999999999999999999999999999999999989999
Q ss_pred hhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHH-HH
Q 013609 165 SVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAI-VV 243 (439)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 243 (439)
+.|++.+++.++..+..++..||++++.+++. ..+ ..+..+.+++|+++.. ..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~-~~~~~~~~~~~~~~~~~~~ 226 (408)
T PRK09874 173 PVFFITASVLFLCFLVTLFCIRENFQPVSKKE-------------------------MLH-MREVVTSLKNPKLVLSLFV 226 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccccchh-------------------------hhH-HHHHHHhCcCCchHHHHHH
Confidence 99999988877766666666666543221100 000 1112345667766543 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCccc---ccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHH
Q 013609 244 NNFTFHYALYVLMNWLPTYFELGLQLSLQ---EMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFM 320 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 320 (439)
..+...........+.|.|.++..+.... ..+.+.....++.+++.+..|++.||+++|+ ....+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~----------~~~~~~~ 296 (408)
T PRK09874 227 TTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK----------ILITALI 296 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch----------hHHHHHH
Confidence 33444445555667788888774332221 2344555667788888899999999999988 6666666
Q ss_pred HHHHHHhhhcccCChhHHHHHH-HHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccc
Q 013609 321 VASIALMALPIFRSSNGAIFCS-SIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKT 399 (439)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~ 399 (439)
+..+..+.....++.+...... +.+.+.....+..........+++++++.+++.+...++|..++|.+.|.+.+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-- 374 (408)
T PRK09874 297 FSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-- 374 (408)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc--
Confidence 6666555555444444333322 2233332222222223334456688999999999999999999999999999887
Q ss_pred cccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 400 TYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
+|+..|.+.+++.+++.+......+++
T Consensus 375 ---------g~~~~f~~~~~~~l~~~~~~~~~~~~~ 401 (408)
T PRK09874 375 ---------GFRAVFLVTAGVVLFNAVYSWNSLRRR 401 (408)
T ss_pred ---------chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999988888877766544443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=273.77 Aligned_cols=378 Identities=12% Similarity=0.049 Sum_probs=273.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhc
Q 013609 13 LTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLK 92 (439)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 92 (439)
.++++.++..++........+.+.+|++.++.+.+++.+.+.+++.+.++++|+++||+|||+++..+.++.++++++++
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~ 86 (393)
T PRK11195 7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML 86 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 45677778777666667777778899999999999999999999999999999999999999999999999999998887
Q ss_pred CCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhH
Q 013609 93 LDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAA 172 (439)
Q Consensus 93 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~ 172 (439)
++. +. ++.|+++|++.+...|...+++.|++|+|+|++++++.+....+|..+||.+++.+.+. .|+..+.+.+.
T Consensus 87 ~~~-~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~ 161 (393)
T PRK11195 87 FGI-HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCAL 161 (393)
T ss_pred HHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 775 54 78899999999999999999999999999999999999999999999999999999884 47777776665
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHH
Q 013609 173 LGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYAL 252 (439)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (439)
..++. .+..+..||++++++++.+ ++ . ...++..+.++.++++|.+........+.....
T Consensus 162 ~~~~~-~~~~~~l~~~~~~~~~~~~-~~--------~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (393)
T PRK11195 162 IYLLA-ALFNLFIPRLGARRPGQSW-NP--------I----------ALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAG 221 (393)
T ss_pred HHHHH-HHHHhcCCCCcccccccCC-CH--------H----------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 54433 3333456665433211100 00 0 000111223457788888776655555555556
Q ss_pred HHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhccc
Q 013609 253 YVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIF 332 (439)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
.......|.|+++.+|.++.+.|.+.....++.+++++..+++.||.++++ ....+.. .+.....+...
T Consensus 222 ~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~----------~~~~g~~-~~~~~~~~~~~ 290 (393)
T PRK11195 222 ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR----------VLPAGIL-MGLVVLLMALQ 290 (393)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----------hHHHHHH-HHHHHHHHHHH
Confidence 666777888898889999999999999999999999999999999877766 5555543 33333333333
Q ss_pred CChhHHHHHH-HHHHHhhhcccccccccccccCCC-h-hhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCccc
Q 013609 333 RSSNGAIFCS-SIALGFLALGRAGFAVNHMDIAPR-Y-AGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPES 409 (439)
Q Consensus 333 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~ 409 (439)
++.+...... +.+.+......+ .....++.+|+ . +|++.++.+..++++..++..+.+.+ +.. +
T Consensus 291 ~~~~~~~~~~~~~G~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~-----------~ 357 (393)
T PRK11195 291 HSLLPAYPLLILIGALGGFFVVP-MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKL-----------G 357 (393)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhh-HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHc-----------C
Confidence 3333222222 333333333333 33344556664 3 69999999999999999999999865 454 6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhc---cCCccCC
Q 013609 410 WRAVFFIPGLLCILSSFVFLLFS---TGERIFD 439 (439)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 439 (439)
.+..+.+.+...+++..+.+..+ +++|++|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK11195 358 VPVVAVIVGFGLLVALAMALLWRWHRRNQRQFD 390 (393)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 77777776666555555544433 3455554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=269.78 Aligned_cols=345 Identities=14% Similarity=0.096 Sum_probs=261.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCC
Q 013609 15 FISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLD 94 (439)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 94 (439)
.+...+..+....+.|..|.+.+++|.++++.++..+++.+++.++++++|+++||+|||+++..+..+..++..+++++
T Consensus 12 ~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 91 (401)
T PRK11043 12 AGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 33355566677888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHH
Q 013609 95 PNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALG 174 (439)
Q Consensus 95 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~ 174 (439)
+ +++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+..+||+.|++.+++.
T Consensus 92 ~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~ 170 (401)
T PRK11043 92 E-SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAIT 170 (401)
T ss_pred c-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 7 999999999999999888888888999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHH
Q 013609 175 GMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYV 254 (439)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (439)
++..+..++.. |+++++++ ++.+.++++++|+|+++...+...+....+..
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (401)
T PRK11043 171 LLLILPTLRLK-PSKKARKQ----------------------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFA 221 (401)
T ss_pred HHHHHHHHHcC-CCCCcccc----------------------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHH
Confidence 77665554443 33221100 11123567888899888766666666666677
Q ss_pred HHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcc--c
Q 013609 255 LMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPI--F 332 (439)
Q Consensus 255 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 332 (439)
+..+.|.++++ .|+++.+.+.......++.+++....+++.||+++|+ ..........+.......... .
T Consensus 222 ~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 293 (401)
T PRK11043 222 WLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ-------LLPWLLVLFAVSVIAIWLASLLSH 293 (401)
T ss_pred HHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 78889998876 7999999998877778888899999999999998877 011112222222222222222 2
Q ss_pred CChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 333 RSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
++.........+.....+...+.......+..|++++++.|+.+.....++..++.+.|.+.|..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 358 (401)
T PRK11043 294 PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALISTP 358 (401)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 22222222222222222233333333334445788999999999999999999999999998754
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=278.13 Aligned_cols=373 Identities=12% Similarity=0.067 Sum_probs=276.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhc
Q 013609 13 LTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLK 92 (439)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 92 (439)
.+....++..+......+..|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++....+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence 34445666777778888999999999999999999999999999999999999999999999999988877776665443
Q ss_pred -----CCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhH
Q 013609 93 -----LDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167 (439)
Q Consensus 93 -----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f 167 (439)
..+ +++.+++.|+++|++.+...+...+++.|+.|+++|+++.++.....++|..+||.+++.+.+..+||+.|
T Consensus 101 ~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~ 179 (417)
T PRK10489 101 LNAFLPEP-SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNY 179 (417)
T ss_pred HHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHH
Confidence 244 78999999999999988888999999999999999999999999999999999999999999888999999
Q ss_pred HHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHH
Q 013609 168 NAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFT 247 (439)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (439)
++.++..++..+... ..|+++++++++. +..++..+.++.++++|.++...+..++
T Consensus 180 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T PRK10489 180 GLAAAGTFITLLPLL-RLPALPPPPQPRE-----------------------HPLRSLLAGFRFLLASPVVGGIALLGGL 235 (417)
T ss_pred HHHHHHHHHHHHHHH-hCCCCCCCCcccc-----------------------cchHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 988777665544443 4454432211000 0011122345667788887666555444
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHh
Q 013609 248 FHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALM 327 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (439)
... ......++|.|+++.+|.++.+.+.+.+...++.+++.++.+++.||.++++ .+..+..+.+++..
T Consensus 236 ~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~----------~l~~~~~~~~~~~~ 304 (417)
T PRK10489 236 LTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL----------LMLLSTLGSFLAVG 304 (417)
T ss_pred HHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch----------HHHHHHHHHHHHHH
Confidence 333 4567788999999888999999999999999999999999999999865555 55566666666665
Q ss_pred hhcccCChhHHHHHHHHHHHhhhccccccccccccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCC
Q 013609 328 ALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSS 406 (439)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~ 406 (439)
.+...++........++.....+...+.......+. |++.||+++|+.+...++|..++|.+.|.+.|..
T Consensus 305 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~--------- 375 (417)
T PRK10489 305 LFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM--------- 375 (417)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh---------
Confidence 555554443322222222222222223334444554 4578999999999999999999999999999987
Q ss_pred cccchhHHHHHHHHHHHH-HHHHHHhc
Q 013609 407 PESWRAVFFIPGLLCILS-SFVFLLFS 432 (439)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~-~~~~~~~~ 432 (439)
++...+...+++.++. .+.....+
T Consensus 376 --g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 376 --TPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred --chhhHHHHHHHHHHHHHHHHHHhcc
Confidence 6777777666555444 44434333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=282.59 Aligned_cols=387 Identities=13% Similarity=0.122 Sum_probs=271.8
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
+++|..+..++++.+++.++....++..|.+.+++|.|+.+.+++.+.+.+++.++.++.|+++||+|||+++..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCc
Q 013609 85 SSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPN 164 (439)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr 164 (439)
+++.+++++++ |++.+++.|++.|++.+...+....++.|++|+|+|++++++...+..+|..+++.+.+.+.+..+||
T Consensus 96 ~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 174 (496)
T PRK03893 96 SVGTLACGFAP-GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR 174 (496)
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 99999999997 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCc------hHHhh------
Q 013609 165 SVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKI------PWKRI------ 232 (439)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------ 232 (439)
+.|++..+..++ .+......||++++++++.+.++. .+..+. ....+.+...... .....
T Consensus 175 ~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (496)
T PRK03893 175 ALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPV----RTMVDI---LYRGEHRIINILLTLAAAAALWFCFAGNLQ 246 (496)
T ss_pred HHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccc----hhHHHH---HhcchhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999875443332 222233344443321111000000 000000 0000000000000 00000
Q ss_pred -------------------------hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHH
Q 013609 233 -------------------------VVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFI 287 (439)
Q Consensus 233 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 287 (439)
.+.+.........+...........++|.|+++.+|++..+.+.+.+...++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~ 326 (496)
T PRK03893 247 NAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAV 326 (496)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 0001111111111111111223567899999877999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChh-HHHHHHHHHH-Hhhhcccccccccccc-cC
Q 013609 288 FSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSN-GAIFCSSIAL-GFLALGRAGFAVNHMD-IA 364 (439)
Q Consensus 288 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~ 364 (439)
+.++.|++.||+++|+ ....+..+..+..+......+.. .......+.. +......+.......+ .+
T Consensus 327 g~~~~g~l~dr~g~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (496)
T PRK03893 327 GCCVGGFLGDWLGTRK----------AYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFD 396 (496)
T ss_pred HHHHHHHHHHHhcchH----------HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCC
Confidence 9999999999999888 55555555444443332222222 2221222211 1121122233334444 45
Q ss_pred CChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHH
Q 013609 365 PRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLC 421 (439)
Q Consensus 365 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (439)
+++|++++|+.+...++|+.++|.+.|.+.|.. +++..+...+..+
T Consensus 397 ~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~-----------g~~~~~~~~~~~~ 442 (496)
T PRK03893 397 TEQRAAGLGFTYNVGALGGALAPILGALIAQRL-----------DLGTALASLSFSL 442 (496)
T ss_pred HHHhhcccchhhhhhhHHHHHHHHHHHHHhccC-----------ChHHHHHHHHHHH
Confidence 579999999999999999999999999999988 7777775554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=271.74 Aligned_cols=377 Identities=14% Similarity=0.116 Sum_probs=275.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhh
Q 013609 13 LTFISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWL 91 (439)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 91 (439)
.+....++.........+.++. +.+++|.|+.++|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~ 93 (400)
T PRK11646 14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM 93 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665 678999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHh
Q 013609 92 KLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEA 171 (439)
Q Consensus 92 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~ 171 (439)
.+++ +++.+++.|+++|++.+...|...+++.|++|+|+|++++++.....++|..+||.+++.+. .++||+.|++.+
T Consensus 94 ~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~ 171 (400)
T PRK11646 94 AIAH-EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGA 171 (400)
T ss_pred HHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 9986 89999999999999998888999999999999999999999999999999999999999998 689999999988
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHH
Q 013609 172 ALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYA 251 (439)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (439)
...++..++..+..||+++++ . .++..+++++.+++|+++...+..+.....
T Consensus 172 ~~~~~~~i~~~~~~~~~~~~~-~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (400)
T PRK11646 172 VLFVLAAAFNAWLLPAYKLST-V---------------------------RTPVREGMTRVLRDKRFVTYVLTLTGYYML 223 (400)
T ss_pred HHHHHHHHHHHHhCCcccccc-c---------------------------chhhHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 877766555444554421110 0 011123457788899887766655554444
Q ss_pred HHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHH-hhhccccchhhhhHHHHHHHHHHHHHHHhhhc
Q 013609 252 LYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH-LITKRILSVTRTRKFLNTVGFMVASIALMALP 330 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
......+.|.|+++..+ ++.+.+.+.+...+.........+++.|| .+.++ ....+..+.+++...+.
T Consensus 224 ~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~----------~~~~~~~~~~~~~~~l~ 292 (400)
T PRK11646 224 AVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH----------RLMAGLLIMSLSMFPIG 292 (400)
T ss_pred HHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH----------HHHHHHHHHHHHHHHHH
Confidence 44556788999988544 67778887777776666555555555554 44343 44555666666665555
Q ss_pred ccCChhHHHHH-HHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCccc
Q 013609 331 IFRSSNGAIFC-SSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPES 409 (439)
Q Consensus 331 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~ 409 (439)
..++....... .+.+.+.....+.......+..|+++||+++|+.+...++|..++|.+.|.+.|..+.. +.
T Consensus 293 ~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~-------~~ 365 (400)
T PRK11646 293 MVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL-------NQ 365 (400)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc-------CC
Confidence 55544333222 22233333333333333344456689999999999999999999999999999986210 13
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccCCcc
Q 013609 410 WRAVFFIPGLLCILSSFVFLLFSTGERI 437 (439)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (439)
....+...+.+.+++.+......|++|.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (400)
T PRK11646 366 PELPWMMLGIIGLITLLALYWQFSQKRI 393 (400)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 4566767677777666666555555543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=271.59 Aligned_cols=334 Identities=16% Similarity=0.165 Sum_probs=256.2
Q ss_pred HhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 013609 23 IERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILV 102 (439)
Q Consensus 23 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (439)
+....+.|.+|.+.+++|.|+++.+++.+++.++..++.+++|+++||+|||+++..+.++.+++...+.+++ +++.++
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~ 83 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ-TIDQLI 83 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc-cHHHHH
Confidence 3456677999999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred HHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHh
Q 013609 103 VARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182 (439)
Q Consensus 103 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 182 (439)
+.|+++|++.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+.+..+||+.|++.+.+.++..+...
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999989999999998888877666666
Q ss_pred hhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013609 183 KYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTY 262 (439)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (439)
+..||++++++++ + .+.++..+++++.+++|+++...+..++.......+..+.|.+
T Consensus 164 ~~~~~~~~~~~~~-~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (377)
T PRK11102 164 FFIPETLPKERRQ-P----------------------FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFV 220 (377)
T ss_pred HhCCccCcccccC-C----------------------CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 6666654322110 0 0011122345678889988887777777777777777788888
Q ss_pred HHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHH---HHhhhcccC-ChhHH
Q 013609 263 FELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASI---ALMALPIFR-SSNGA 338 (439)
Q Consensus 263 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~ 338 (439)
+.+.+|+++.+.+.......+..+++.++.+++.||+++|+ ....+..+..+ ........+ +.+..
T Consensus 221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (377)
T PRK11102 221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALN----------MLRFGLWIQFIMGIWLVVSALLDLGFWAL 290 (377)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 88888999999999999999999999999999999999988 55555443222 222222222 22222
Q ss_pred HHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhh-hhHHHHHHHH
Q 013609 339 IFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGT-LAGIVGVDMT 390 (439)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~i~~~~~ 390 (439)
........+..............+..|++++++.++.+.... ++..+++.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 291 VVGVAAFVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222233334456677899999999877654 4455555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=265.58 Aligned_cols=360 Identities=8% Similarity=0.005 Sum_probs=278.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHH----HHHHHHHHHHHh
Q 013609 14 TFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVL----LFSFVLWSSTCF 89 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~ 89 (439)
+.+.++..+.......|.+|.+.+|+|.|.+++|++.+++.+...++++++|+++||+|||+.. .++..+..+ .
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence 5667788888888999999999999999999999999999999999999999999999985433 333322222 2
Q ss_pred hhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHH
Q 013609 90 WLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNA 169 (439)
Q Consensus 90 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~ 169 (439)
.+..++ +++.+++.|.++|.+.+...|...++..|+ +++|++.+|....+.++|.+++|++++.+.+++|||..|++
T Consensus 87 ~~~~~~-~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 87 FSAGAH-NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred HHHhhh-hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 444665 899999999999999988899999988765 47899999999999999999999999999999999999988
Q ss_pred HhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHH
Q 013609 170 EAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFH 249 (439)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (439)
.+....+ .+......|+.+++++++ + ++++...+.++++|+|+++...+..++..
T Consensus 164 ~~~~~~~-~~~~~~~~~~~~~~~~~~-~-----------------------~~~~~~~~~~~~l~~~~~~~~l~~~~l~~ 218 (382)
T TIGR00902 164 LTAGLAF-MLIGFLIKPTIPPKDAIP-E-----------------------DESQGDSAFIALLKNPMNLRFLAAVCLIQ 218 (382)
T ss_pred HHHHHHH-HHHHHHcCCCCCCCcccc-c-----------------------cccccchhHHHHHcChHHHHHHHHHHHHH
Confidence 7655332 223333333222211100 0 00111234578999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhh
Q 013609 250 YALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMAL 329 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
.+...+..+.|.|+++ .|.++.+.+.+.....+..+++..+.+++.||++.|+ .+..+.+...+....+
T Consensus 219 ~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~----------~l~~~~~~~~~~~~~~ 287 (382)
T TIGR00902 219 GAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD----------LLLISAIACVGRWAII 287 (382)
T ss_pred HHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH----------HHHHHHHHHHHHHHHH
Confidence 9999999999999987 8999999999999888999999999999999999998 8888999998888888
Q ss_pred cccCChhHHHHHHHH-HHHhhhcccccccccccccCCChhhHHHHHHHH-HhhhhHHHHHHHHHHhhccccccccCCCCc
Q 013609 330 PIFRSSNGAIFCSSI-ALGFLALGRAGFAVNHMDIAPRYAGIVMGISNT-AGTLAGIVGVDMTGKLLEAAKTTYSDLSSP 407 (439)
Q Consensus 330 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~ 407 (439)
...++.+......++ +..++... +....+..+.+++++++++++++. ...+|..++|.+.|.+.|..
T Consensus 288 ~~~~~~~~~~~~q~l~g~~~~~~~-~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---------- 356 (382)
T TIGR00902 288 GAIEAFPLIFLLQILHCGTFAVCH-LAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---------- 356 (382)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 777666654444333 33333333 333444445566789999999874 56789999999999999998
Q ss_pred ccchhHHHHHHHHHHHHHHH
Q 013609 408 ESWRAVFFIPGLLCILSSFV 427 (439)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~ 427 (439)
++ ..|...+++.+++.++
T Consensus 357 -g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 357 -GA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred -cH-HHHHHHHHHHHHHHHH
Confidence 54 6677777777766444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=266.91 Aligned_cols=369 Identities=15% Similarity=0.118 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhh-hhhhhcccccccccccCchHHH-HHHHHHHHHHH
Q 013609 12 ILTFISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYY-GYACSQVPGGWAAQKIGGRKVL-LFSFVLWSSTC 88 (439)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~ 88 (439)
....+..++.........|.+|. +.+|+|.|++++|++.+...+ +..+++++.++ +||+||||.+ ..+.+..+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~ 96 (393)
T PRK15011 18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC 96 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence 34455577777777777787777 678899999999999876655 55556655555 9999999875 45666666778
Q ss_pred hhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCccc--chhhHHHhhhhhHHHHHHhhhhhhhhcccCCchh
Q 013609 89 FWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHER--SRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSV 166 (439)
Q Consensus 89 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~ 166 (439)
.+.++++ +++.+++.+.+.|...+...|...+++.|+.++++| +...++.+.+.++|.++||++++.+.+++|||..
T Consensus 97 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~ 175 (393)
T PRK15011 97 TLFAWNR-NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVM 175 (393)
T ss_pred HHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHH
Confidence 8888886 898877666555544456788889999998876655 3445788899999999999999999998999999
Q ss_pred HHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHH
Q 013609 167 FNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNF 246 (439)
Q Consensus 167 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (439)
|++.++..++..+..++..||.+++++++ + + +.+.. ++ +++..+.......
T Consensus 176 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~--------------------~~~~~----~~--~~~~~~~~~~~~~ 226 (393)
T PRK15011 176 YLSAAVAFIVCGVMVWLFLPSMRKELPLA-T--G--------------------TLEAP----RR--NRRDTLLLFVICT 226 (393)
T ss_pred HHHHHHHHHHHHHHHHhhcCccCCCCccc-c--c--------------------ccccc----cc--ccccHHHHHHHHH
Confidence 99998888777766666677765432110 0 0 00000 00 0112233333334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHH
Q 013609 247 TFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIAL 326 (439)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (439)
........+..+.|.|+++.+|+++.+.+.+.....+..+++.++.|+++||+++|+ ....+.....+..
T Consensus 227 ~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~----------~~~~~~~~~~~~~ 296 (393)
T PRK15011 227 LMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF----------LMRVAAVAGVCFY 296 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH----------HHHHHHHHHHHHH
Confidence 444555566778999998889999999988887777888889999999999999988 4444444444333
Q ss_pred hhhcccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCC
Q 013609 327 MALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSS 406 (439)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~ 406 (439)
......++....+....+.....+...+.......|..|+++++++++.+...++|..++|.+.|.+.|..
T Consensus 297 ~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~--------- 367 (393)
T PRK15011 297 AGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW--------- 367 (393)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 33333333333332222222222222222334456777888999999999999999999999999999987
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 407 PESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
+|+..+.+.+++.+++.+..+..+
T Consensus 368 --g~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK15011 368 --NYHAVFWFALVMIIATLFCLLRIK 391 (393)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHhhc
Confidence 799999888888888777776654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=267.40 Aligned_cols=342 Identities=14% Similarity=0.106 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhc
Q 013609 13 LTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLK 92 (439)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 92 (439)
......+..........+.+|.+.+|+|.|+.+.++..+.+.++..+++++.|+++||+|||+.+..+.++..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 34444555666666777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhH
Q 013609 93 LDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAA 172 (439)
Q Consensus 93 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~ 172 (439)
+++ +++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+.+..+||+.|++.++
T Consensus 87 ~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~ 165 (392)
T PRK10473 87 LAE-TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAA 165 (392)
T ss_pred HhC-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHH
Confidence 987 8999999999999999988999999999999999999999999999999999999999998888999999999988
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHH
Q 013609 173 LGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYAL 252 (439)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (439)
..++..++.....||++++++++ +++..+..++.+++|+++...+...+.....
T Consensus 166 ~~~i~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (392)
T PRK10473 166 MGILVLLLSLFILKETRPARAPA--------------------------ASSKPRENSESLLNRFFLSRLVITTLSVTVI 219 (392)
T ss_pred HHHHHHHHHHHHcCCCCCcccCC--------------------------ccchHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 88777666666666654322110 0011122356778888776666555555555
Q ss_pred HHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhccc
Q 013609 253 YVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIF 332 (439)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
..+..+.|.++++.+|+++.+.+.......++.+++..+.+++.||+++|+ ....+..+..++...+...
T Consensus 220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~----------~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT----------LMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 566677788888888999999998888999999999999999999999988 6666666666665555544
Q ss_pred CChhHHHH-HHHHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 333 RSSNGAIF-CSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 333 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
+....... ..+...+....... ....+..| ++|+ |..+....++..+++.+.+++.+..
T Consensus 290 ~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~ 350 (392)
T PRK10473 290 PSHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL 350 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33332222 22222222221111 12222333 3332 3334445567777777777787776
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=283.58 Aligned_cols=373 Identities=14% Similarity=0.085 Sum_probs=269.7
Q ss_pred HHHHHHHHhhCCC---ccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHH
Q 013609 30 IAYTAAADAAGVN---QSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARL 106 (439)
Q Consensus 30 ~~~~~i~~~~~~s---~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 106 (439)
+..|.+.+|+|++ +.+.++..+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++ |++.+++.|+
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~r~ 188 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP-NYTVFLVFRL 188 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHH
Confidence 5678899999998 89999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred HHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhcc
Q 013609 107 LVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYAT 186 (439)
Q Consensus 107 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~ 186 (439)
+.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ ||+.|++.+++.++..+.. ++.|
T Consensus 189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~ 264 (505)
T TIGR00898 189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVP 264 (505)
T ss_pred HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcC
Confidence 99999999999999999999999999999999999999999999998876643 9999999998877766555 5778
Q ss_pred CCCCCCCCCCCcccccCccCc--------ccchh-hhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 013609 187 DPPRSEHPKASAAGFGESLLP--------MRDQK-VKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMN 257 (439)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
|+|++...+.+.++..+...+ ...+. ....+++.+.++...++++++++|+++...+......+.......
T Consensus 265 esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (505)
T TIGR00898 265 ESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYY 344 (505)
T ss_pred CChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 988865444333322110000 00000 000000001111234678899999888776665554444333333
Q ss_pred HHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCCh--
Q 013609 258 WLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSS-- 335 (439)
Q Consensus 258 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 335 (439)
.++.+..+ .+.+. .......++..+++.++.+++.||++||+ .+..+.++.+++.+.+...++.
T Consensus 345 ~~~~~~~~-~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~----------~~~~~~~~~~~~~l~~~~~~~~~~ 410 (505)
T TIGR00898 345 GLVLDLGN-LGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRY----------TMAASLLLAGVALLLLLFVPVDLY 410 (505)
T ss_pred HHhccccc-cCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHHHHHHHcCCCch
Confidence 33333333 44442 23334556778889999999999999998 7777777777776666555433
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHH
Q 013609 336 NGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVF 414 (439)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 414 (439)
.......++..+......+....+..|..| +.|+++.|+.+....+|++++|.+.+ + +.. ++..++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~-----------~~~~~~ 477 (505)
T TIGR00898 411 FLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEK-----------WLFLPL 477 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHH-----------HHhhHH
Confidence 222222333322223333444556666666 78999999999999999999999998 3 333 456677
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 013609 415 FIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~ 434 (439)
.+.++..+++.+..+++++.
T Consensus 478 ~~~~~~~~~~~~~~~~lpet 497 (505)
T TIGR00898 478 VLFGGLALLAGILTLFLPET 497 (505)
T ss_pred HHHHHHHHHHHHHHHcCcCC
Confidence 77777777777766666543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=266.09 Aligned_cols=347 Identities=18% Similarity=0.231 Sum_probs=257.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhh
Q 013609 12 ILTFISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFW 90 (439)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 90 (439)
...+++.++...+...+.+..|. +.+++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.+.++.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~ 83 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW 83 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 35677778888888999999995 99999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc----------c
Q 013609 91 LKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK----------Y 160 (439)
Q Consensus 91 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~ 160 (439)
+++++++++.+++.|+++|++.+ ..+...++++|++|+|+|++++++.....++|..+++.+++.+.+ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 84 AGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred HHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99883279999999999999966 456788999999999999999999998888888888777766554 3
Q ss_pred cCCchhH-HHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHH
Q 013609 161 NGPNSVF-NAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVW 239 (439)
Q Consensus 161 ~~wr~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (439)
.+||+.| +..+++..+..++.+...+|+|++++++.+.+...+ .. ..+++...+.++.+++|+++
T Consensus 163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~ 228 (366)
T TIGR00886 163 LAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGA-----RW---------SVGTGALGDQLKVFRDRHTW 228 (366)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccc-----cc---------cccchhHHHHHHHHhccchh
Confidence 4899999 444555555555555555665543211110000000 00 00011112456788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHH
Q 013609 240 AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGF 319 (439)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 319 (439)
...+..++..........+.|.|+++.+|.++.+++.+.....+..++++++.+++.||+++|+ ....+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~----------~~~~~~ 298 (366)
T TIGR00886 229 ILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR----------KLLMSF 298 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch----------hHHHHH
Confidence 8888888877788888999999999989999999998888889999999999999999999987 434433
Q ss_pred HHHHHHHhhhc--ccC--ChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhH
Q 013609 320 MVASIALMALP--IFR--SSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAG 383 (439)
Q Consensus 320 ~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 383 (439)
.....+...+. ..+ +...............+...+.......+..|+++|+++|+.+...++|+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 299 LGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLGG 366 (366)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCCC
Confidence 33333333222 222 22222222223333334444445566667778999999999999888763
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=264.64 Aligned_cols=369 Identities=12% Similarity=0.102 Sum_probs=276.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHh
Q 013609 10 IVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCF 89 (439)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 89 (439)
.+..++...++.++.....++..|.+++++|.|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++..
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 35567777888888889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcC---CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc------
Q 013609 90 WLKL---DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY------ 160 (439)
Q Consensus 90 ~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------ 160 (439)
++.. .+ +++.+++.|++.|+|.+...+..++++.+..|+++|++.+++.+...++|..++|.+++.+...
T Consensus 84 l~~~~~~~~-~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~ 162 (410)
T TIGR00885 84 LFWPAAEIM-NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS 162 (410)
T ss_pred HHHHHHhhc-cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 8643 34 8999999999999999999999999999999999999999999999999999999998877421
Q ss_pred --------------------cCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccc
Q 013609 161 --------------------NGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGS 220 (439)
Q Consensus 161 --------------------~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (439)
.+||++|++.+++.++..++.. +.+. |+.++++ +
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~-p~~~~~~------------------------~ 216 (410)
T TIGR00885 163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKM-PALNHSD------------------------A 216 (410)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-CCCCccc------------------------c
Confidence 3699999999887776544433 2222 2111000 0
Q ss_pred cccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCcccccchhhhhhHHHHHHHHHHHHHHHHHh
Q 013609 221 AMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGL-QLSLQEMGSSKMMPYLNMFIFSNIGGVVADHL 299 (439)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 299 (439)
++.+..++.++++|+|+++...+..++.........++++.|.++.. +.+...++...+.......+|+++++++.||+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~ 296 (410)
T TIGR00885 217 KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL 296 (410)
T ss_pred ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00111224457889999998888888888888788899999997632 33434445455666678899999999999999
Q ss_pred hhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHh
Q 013609 300 ITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAG 379 (439)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 379 (439)
++|+ .+.++..+..+..++....++..........+++.....+.......+...++.+..+.++....
T Consensus 297 ~~~~----------~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~- 365 (410)
T TIGR00885 297 AAHK----------VLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI- 365 (410)
T ss_pred CHHH----------HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-
Confidence 9988 77777777777777776665544455555556555555544444555555544444444444443
Q ss_pred hhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHH
Q 013609 380 TLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCI 422 (439)
Q Consensus 380 ~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (439)
+|+++.|++.|.+.|..+... .++++.+|++...+.+
T Consensus 366 -~Gga~~p~l~G~~~d~~~~~~-----~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 366 -IGGGIVPPLQGFIIDMKEIAA-----APAVNTSFILPLLCFA 402 (410)
T ss_pred -hccchHHHHHHHHHHHhcccc-----cCccchHHHHHHHHHH
Confidence 999999999999999541100 0247777776444433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=256.98 Aligned_cols=347 Identities=28% Similarity=0.464 Sum_probs=296.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhc
Q 013609 13 LTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLK 92 (439)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 92 (439)
.+.+..+....+.....+..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+..+..++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 45567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhH
Q 013609 93 LDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAA 172 (439)
Q Consensus 93 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~ 172 (439)
+.+ +++.+++.|++.|++.+...+...+++.|++|+|+|++.+++.+....+|..+++.+++.+.+..+||+.+++.++
T Consensus 83 ~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (352)
T cd06174 83 FAS-SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI 161 (352)
T ss_pred Hhc-cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 986 9999999999999999999999999999999999999999999999999999999999999998899999999888
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHH
Q 013609 173 LGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYAL 252 (439)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (439)
..++..+...+.. |+++...+..++.....
T Consensus 162 ~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~ 191 (352)
T cd06174 162 LGLLLALLLLFLL--------------------------------------------------RLLLLLALAFFLLSFGY 191 (352)
T ss_pred HHHHHHHHHHHHH--------------------------------------------------HHHHHHHHHHHHHHhHH
Confidence 8777655544331 56777788888888899
Q ss_pred HHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhccc
Q 013609 253 YVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIF 332 (439)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
.....+.|.+.++..|.++.+.+.......++..++.++.+++.||.++|+ ..+..+..+..++.......
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~ 262 (352)
T cd06174 192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR---------LLLLIGLLLAALGLLLLALA 262 (352)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999977999999999999999999999999999999998876 14555666666666666666
Q ss_pred CChhHHHHHHHHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccch
Q 013609 333 RSSNGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWR 411 (439)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~ 411 (439)
++.+.......+.....+...+.......+..| ++|++..|+.+...+++..++|.+.|.+.|.. +++
T Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-----------~~~ 331 (352)
T cd06174 263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-----------GYG 331 (352)
T ss_pred ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------Ccc
Confidence 554444444333333334444555555555544 89999999999999999999999999999876 899
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 013609 412 AVFFIPGLLCILSSFVFLL 430 (439)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~ 430 (439)
..+.+.+++.+++.+....
T Consensus 332 ~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 332 GVFLILAALALLAALLLLL 350 (352)
T ss_pred hHHHHHHHHHHHHHHHhee
Confidence 9999999988888776544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=262.46 Aligned_cols=366 Identities=12% Similarity=0.067 Sum_probs=272.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhh
Q 013609 12 ILTFISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFW 90 (439)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 90 (439)
..+.+..++.........+.+|. +.+++|+|+.++|++.+.+.+++.+.+++.|+++||+|||+++.++.++..++.++
T Consensus 10 ~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~ 89 (395)
T PRK10054 10 SALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA 89 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence 34445667777777777777765 56789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHH
Q 013609 91 LKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAE 170 (439)
Q Consensus 91 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~ 170 (439)
.++++ +++.+++.|.+.|.+.+...+...++..|..|+++|++++++.....++|..++|.+++.+.+ .+||.+|++.
T Consensus 90 ~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~ 167 (395)
T PRK10054 90 IPLVN-NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA 167 (395)
T ss_pred HHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence 99986 899999999999988887888899999999999999999999999999999999999998875 7999999988
Q ss_pred hHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHH
Q 013609 171 AALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHY 250 (439)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (439)
++..++..++..+..||++++++++ + ++ ..+.++.+|||+++...+..++...
T Consensus 168 ~~~~~i~~i~~~~~~~~~~~~~~~~------------------------~--~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (395)
T PRK10054 168 AICSAFPLVFIQIWVQRSEKAIATE------------------------T--GS-VWSPSVLLQDKALLWFTCSGFLASF 220 (395)
T ss_pred HHHHHHHHHHHHHHHhccccccccc------------------------h--hh-hhhhhhhccCceehHHHHHHHHHHH
Confidence 8777766555554454433221100 0 00 0112567889999888887777777
Q ss_pred HHHHHHHHHHHHHHHh--hCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhh
Q 013609 251 ALYVLMNWLPTYFELG--LQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMA 328 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (439)
.......+.+.|..+. .+.+....+.......+.....+...+++.||.++|+ ....+..+..++...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~l~~~~~~~~~~~~~ 290 (395)
T PRK10054 221 VSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP----------LMTAGTLCFVIGLVG 290 (395)
T ss_pred HHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh----------HHHHHHHHHHHHHHH
Confidence 7666667777777543 3455556677777776767777788889999988887 666676666666655
Q ss_pred hcccC-ChhHHH-HHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCC
Q 013609 329 LPIFR-SSNGAI-FCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLS 405 (439)
Q Consensus 329 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~ 405 (439)
+.... +.+... .....+.+. ....+.......+ .+++.++++.+..+ ...+|..+||.+.|.+.|+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~g~-~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~-------- 360 (395)
T PRK10054 291 FIFSGNSLLLWGMSAAVFTVGE-IIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL-------- 360 (395)
T ss_pred HHHcchHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc--------
Confidence 54432 332222 222223332 2222333334434 45578899988655 67789999999999999998
Q ss_pred CcccchhHHHHHHHHHHHHHHHHH
Q 013609 406 SPESWRAVFFIPGLLCILSSFVFL 429 (439)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~ 429 (439)
++...+++.+.+..++.++..
T Consensus 361 ---g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 361 ---PPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred ---ChhhHHHHHHHHHHHHHHHHH
Confidence 788888777666666555554
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=261.29 Aligned_cols=331 Identities=15% Similarity=0.124 Sum_probs=252.6
Q ss_pred hhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHH
Q 013609 25 RVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVA 104 (439)
Q Consensus 25 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (439)
....++.+|.+.+|+|.|+++.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .++ +++.+++.
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~-~~~~l~~~ 93 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP-GTALLFAG 93 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc-cHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999888888877 666 89999999
Q ss_pred HHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhccc--CCchhHHHHhHHHHHHHHHHh
Q 013609 105 RLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN--GPNSVFNAEAALGGMWSLLWF 182 (439)
Q Consensus 105 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~ 182 (439)
|++.|++.+...+.....+.|++| ++|++++++.+.+..+|..+++.+++.+.++. +||+.|...+.+.++....
T Consensus 94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~-- 170 (355)
T TIGR00896 94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLA-- 170 (355)
T ss_pred HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--
Confidence 999999999888888889999986 68999999999999999999999998887754 3999988776654433222
Q ss_pred hhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013609 183 KYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTY 262 (439)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (439)
..|+.+++++++ ++....+.++++|+|.++...+..++....++....++|.|
T Consensus 171 -~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 223 (355)
T TIGR00896 171 -WIPQVRRRVAAN--------------------------QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAI 223 (355)
T ss_pred -HhhhhccccCCC--------------------------CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223332211100 00011223567888998887777777777888888999999
Q ss_pred HHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHH
Q 013609 263 FELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCS 342 (439)
Q Consensus 263 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (439)
+++ .|.+..+.+...+...++.++++++.|++.||+++|+ .....+..+.+++.+.+...++........
T Consensus 224 ~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T TIGR00896 224 LIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQR---------GIVAVLAVLQLVGLCGLLFAPMHGLWAWAL 293 (355)
T ss_pred HHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch---------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 987 7999999999999999999999999999999995444 145555555555555454443332222233
Q ss_pred HHHHHhhhcccccccccccccC-CChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 343 SIALGFLALGRAGFAVNHMDIA-PRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
+.+.+.+...+........+.+ +++++...++.+...+++..++|.+.|.+.|+.
T Consensus 294 l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 294 VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333332222222222333444 367899999999999999999999999999988
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=254.73 Aligned_cols=356 Identities=10% Similarity=0.047 Sum_probs=264.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCch----HHHHHHHHHHHHHHhhhcC
Q 013609 18 TCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGR----KVLLFSFVLWSSTCFWLKL 93 (439)
Q Consensus 18 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~ 93 (439)
++........+.|.+|.+.+|+|.|.+++|++.+++.++..++++++|+++||+||| +.+.+...+. .......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 555566678889999999999999999999999999999999999999999999984 3333332222 2233344
Q ss_pred CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHH
Q 013609 94 DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAAL 173 (439)
Q Consensus 94 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~ 173 (439)
++ +++.+++.|++.|++.+...|...++..++ +++|++..+......++|..+||++++.+.+++|||..|++.++.
T Consensus 91 ~~-~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~ 167 (382)
T PRK11128 91 AH-SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAG 167 (382)
T ss_pred cc-cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 54 899999999999999998999988888877 467889999999999999999999999999999999999887765
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHH
Q 013609 174 GGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALY 253 (439)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (439)
.++..+. .+..||++++.+++ ++.++...++++++|+|+++...+..++......
T Consensus 168 ~~~~~~~-~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~ 222 (382)
T PRK11128 168 VASMLLG-QLLRPTIMPQGESR------------------------QQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHA 222 (382)
T ss_pred HHHHHHH-HHccCCCCCccccc------------------------cccccccchHHHHHcChhHHHHHHHHHHHHHHhH
Confidence 4443332 23333322111000 0001123457889999999988888787777777
Q ss_pred HHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccC
Q 013609 254 VLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFR 333 (439)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
....+.|.|+++ .|.++.+.+.+.....+..++...+.+++.||+++|+ .+..+.+..++..+.+...+
T Consensus 223 ~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~----------~l~~~~~~~~~~~~~~~~~~ 291 (382)
T PRK11128 223 AYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD----------LLLLSAICGVVRWGLMGSTT 291 (382)
T ss_pred hHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----------HHHHHHHHHHHHHHHHHhhh
Confidence 888889999977 8999999999888888889999999999999999988 77777777777776666665
Q ss_pred ChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHH-HHhhhhHHHHHHHHHHhhccccccccCCCCcccchh
Q 013609 334 SSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISN-TAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRA 412 (439)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~ 412 (439)
+.+......++.....+...+....+..+.+++++++..+..+ .....|..++|.+.|.+.|.. ++ .
T Consensus 292 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~-----------g~-~ 359 (382)
T PRK11128 292 ALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL-----------GA-G 359 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cH-H
Confidence 5554444333322223333344444555566767788999887 445667799999999999998 44 4
Q ss_pred HHHHHHHHHHHHHH
Q 013609 413 VFFIPGLLCILSSF 426 (439)
Q Consensus 413 ~~~~~~~~~~~~~~ 426 (439)
.+...+++.+++.+
T Consensus 360 ~~~~~~~~~~~~~~ 373 (382)
T PRK11128 360 VFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666555433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=259.16 Aligned_cols=376 Identities=13% Similarity=0.109 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhccccccccccc-----CchHH-HHHHHHHH
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKI-----GGRKV-LLFSFVLW 84 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~ 84 (439)
...+++..+..+......++.+|...++.|.|.++++.+ +.....+ ++.+++|+++||+ ||||. +..+.+..
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 445556667777788889999999999999999999997 4444444 5889999999999 99986 66777777
Q ss_pred HHHHhhhcCCc--chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc-cc
Q 013609 85 SSTCFWLKLDP--NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK-YN 161 (439)
Q Consensus 85 ~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~ 161 (439)
+++...+++.+ ++++.+.+.+++.|++.+...+...+++.|++|+|||+++.++...+..+|.++++.++..+.+ ..
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~ 171 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL 171 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77776666642 2788999999999999999999999999999999999999999999999999999999999988 57
Q ss_pred CCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHH
Q 013609 162 GPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAI 241 (439)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (439)
|||..|++.++..++..+..+ ..||++++.+++ + +.+++...++++.+++++.+..
T Consensus 172 GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~----~-------------------~~~~~~~~~l~~~~~~~~~~~~ 227 (491)
T PRK11010 172 GWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVP----K-------------------TLEQAVVAPLRDFFGRNNAWLI 227 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-hcCCCccccccc----c-------------------chhhhHHHHHHHHHcCcCHHHH
Confidence 999999999988776655444 356654321000 0 0001112356778888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhh-hhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHH
Q 013609 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKM-MPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFM 320 (439)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 320 (439)
.+..++..........+.+.|+.+..|++..+.+.... ...++.+++.++.|++.||+++|+ ....+.+
T Consensus 228 ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~----------~l~i~~~ 297 (491)
T PRK11010 228 LLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR----------ALMIFGI 297 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHH
Confidence 66666666676777778888887778999999999874 556789999999999999999887 4444333
Q ss_pred HHHHHH---hhhcccC-ChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhc
Q 013609 321 VASIAL---MALPIFR-SSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395 (439)
Q Consensus 321 ~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 395 (439)
+.++.. ..+.... +.........+.....+...+.......+ .+++.+++..|+.+...++|..+++.+.|.+.|
T Consensus 298 l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~ 377 (491)
T PRK11010 298 LQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE 377 (491)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 1222222 22222212222111122222223333333 455688999999999999999999999999999
Q ss_pred cccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 396 AAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
.. ||+..|.+.+++.+.+.+.....++
T Consensus 378 ~~-----------G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 378 AH-----------GWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred Hh-----------ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87 7999999999999888877776654
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=258.99 Aligned_cols=359 Identities=17% Similarity=0.173 Sum_probs=256.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhC--CCccchhhhhhh-----hhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhh
Q 013609 18 TCVCYIERVGFSIAYTAAADAAG--VNQSSKGTILST-----FYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFW 90 (439)
Q Consensus 18 ~~~~~~~~~~~~~~~~~i~~~~~--~s~~~~g~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 90 (439)
.+.+++|+..+++..+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++..++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 81 (394)
T TIGR00883 2 NAVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL 81 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 35678899999999999888865 445566665543 33334578899999999999999999999999999999
Q ss_pred hcCCcchHH--------HHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhh----
Q 013609 91 LKLDPNNVF--------ILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLV---- 158 (439)
Q Consensus 91 ~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---- 158 (439)
+++++ +++ .+++.|+++|++.+...+...+++.|++|+|+|++..+..+.+..+|..+++.++..+.
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~ 160 (394)
T TIGR00883 82 IGLLP-SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG 160 (394)
T ss_pred HhhCC-ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99997 765 58899999999999999999999999999999999999999999999999998876653
Q ss_pred ----cccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhc
Q 013609 159 ----KYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVV 234 (439)
Q Consensus 159 ----~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (439)
+.++||+.|++.+++.++.... ....||++++++++. ++++...+.++.++
T Consensus 161 ~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 215 (394)
T TIGR00883 161 DDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVFEKAQE------------------------KHKKKRGPIRETLT 215 (394)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHHHHh------------------------ccccccCCHHHHHH
Confidence 3578999998877665554333 233445443221100 01112234456666
Q ss_pred chh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhH
Q 013609 235 NLP--VWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRK 312 (439)
Q Consensus 235 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 312 (439)
+++ ++......++..........+.|.|+++.+|.++.+.+.......+...++.++.+++.||+++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~--------- 286 (394)
T TIGR00883 216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP--------- 286 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH---------
Confidence 655 777777777777788888899999998888999999999888899999999999999999999888
Q ss_pred HHHHHHHHHH-HHHH-hhhcc--cCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHH-HHHhhhhHHHH
Q 013609 313 FLNTVGFMVA-SIAL-MALPI--FRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGIS-NTAGTLAGIVG 386 (439)
Q Consensus 313 ~~~~~~~~~~-~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~-~~~~~~g~~i~ 386 (439)
.......+. .... ..... .++........+......+...+.......| .|+++|+++.++. +....+|..++
T Consensus 287 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~ 365 (394)
T TIGR00883 287 -VLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFA 365 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHH
Confidence 433322222 2221 11111 1222222222222222222233334444444 4557899999985 45556788899
Q ss_pred HHHHHHhhccccccccCCCCcccchhHHHHHHHHHH
Q 013609 387 VDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCI 422 (439)
Q Consensus 387 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (439)
|.+.|.+.|+. +.++..++...+..+
T Consensus 366 p~~~g~l~~~~----------g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 366 PYIAAALVAMT----------GDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHc----------CcchhHHHHHHHHHH
Confidence 99999999987 236666666555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-32 Score=253.98 Aligned_cols=382 Identities=13% Similarity=0.102 Sum_probs=255.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH-HHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHh
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAA-ADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCF 89 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 89 (439)
...+.+..++.........+.+|.. .+++|+|+.+.|++.+.+.++..++++++|+++||+|||+++.++..+.+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 91 (420)
T PRK09528 12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFG 91 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 3344456666666666667777765 555999999999999999999999999999999999999999887666554433
Q ss_pred hhc---CCc----chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC
Q 013609 90 WLK---LDP----NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG 162 (439)
Q Consensus 90 ~~~---~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 162 (439)
... .++ +.....++.++..|.+.....+....+..+ . ++++++.++......++|..++|++++.+.+ .+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~ 168 (420)
T PRK09528 92 PFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-IN 168 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cC
Confidence 211 111 011112334444444444444444444332 2 3567888899999999999999999998876 59
Q ss_pred CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHH
Q 013609 163 PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (439)
|+..|++.+++.++..++.++..+|++++...+ ++++ + ++++...++.++.+|||+++...
T Consensus 169 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~----------------~~~~~~~~~~~~~l~~~~~~~l~ 229 (420)
T PRK09528 169 PQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-NALG--A----------------NASAVSLKDALALLKLPKFWFLV 229 (420)
T ss_pred chHhHHHHHHHHHHHHHHHhcccccccchhhhc-cchh--c----------------ccccccHHHHHHHccCCCeEeeh
Confidence 999999988887776666555554443321100 0000 0 00111123345688899887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---CCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHH
Q 013609 243 VNNFTFHYALYVLMNWLPTYFELGL---QLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGF 319 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 319 (439)
+........+.....+.|.|+.+.. +.+..+.+.+.+...+...++.++.|++.||+++|+ ....+.
T Consensus 230 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~----------~~~~~~ 299 (420)
T PRK09528 230 LYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN----------ALLLAG 299 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch----------hhHHHH
Confidence 6555555555556667788776643 455566788888888889999999999999999998 677777
Q ss_pred HHHHHHHhhhcccCChhHHHHHHHHHHHhhhccccccccc-ccccCCChhhHHHHH-HHHHhhhhHHHHHHHHHHhhccc
Q 013609 320 MVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVN-HMDIAPRYAGIVMGI-SNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
.+..+...+..+.++.+.......+..............+ .++.+++.+++..+. .+....+|..++|.+.|++.|..
T Consensus 300 ~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~ 379 (420)
T PRK09528 300 TIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI 379 (420)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777776666666555543332222221111111222223 344566788887765 67788999999999999999988
Q ss_pred cccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 398 KTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
||+.+|.+.+++.++..++.+...+++
T Consensus 380 -----------G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 380 -----------GFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 799999998888777666665554443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-31 Score=225.47 Aligned_cols=377 Identities=15% Similarity=0.186 Sum_probs=307.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHH
Q 013609 8 YLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSST 87 (439)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 87 (439)
+..+..+.+..+----....++|.++++.+|+|+|.+..|.+.++..++..+.+++..+++.|+|.++.+..++++.+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444455678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhccc-CCchh
Q 013609 88 CFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN-GPNSV 166 (439)
Q Consensus 88 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~wr~~ 166 (439)
.++-... +.+.++.+-.+.|.|.+......+.++.+.+| |+-+..++++....++|..+++.+...+.++. |||..
T Consensus 91 ~~iR~~~--~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~a 167 (395)
T COG2807 91 ILIRSLG--GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGA 167 (395)
T ss_pred HHHHhcc--cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHH
Confidence 9999876 57888899999999999999999999999996 67899999999999999999999999998877 79999
Q ss_pred HHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHH
Q 013609 167 FNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNF 246 (439)
Q Consensus 167 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (439)
..+.+.++++..+.++ |...+++.. +.+.+..+-..++|+|..|.+.+...
T Consensus 168 L~~WAl~allAl~~Wl---Pq~~r~~~~--------------------------~~~~~~~~~~~vw~~~~aW~vtLfmG 218 (395)
T COG2807 168 LGFWALLALLALLIWL---PQALREQAA--------------------------SIATKLVSVRKVWRSPLAWQVTLFMG 218 (395)
T ss_pred HHHHHHHHHHHHHHHh---hhccccccc--------------------------ccccccccccccccCchhHHHHHHHH
Confidence 9999999888776665 332222111 11112222256899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHH
Q 013609 247 TFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIAL 326 (439)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (439)
++...+|....|+|.++.| .|+|..++|.+.+...+.+++.++..+.+.+|..+++ ........++.++.
T Consensus 219 lqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r---------~~~~~~~~~~l~G~ 288 (395)
T COG2807 219 LQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR---------PLVVLALLLMLVGL 288 (395)
T ss_pred hhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc---------hHHHHHHHHHHHHH
Confidence 9999999999999999999 7999999999999999999999999999999866555 35666666777777
Q ss_pred hhhcccCChhHHHHHHHHHHHhhhccccccccc-ccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCC
Q 013609 327 MALPIFRSSNGAIFCSSIALGFLALGRAGFAVN-HMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLS 405 (439)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~ 405 (439)
+.+.+.+........++++.+.++..+...... .....|++.++-+|+.+.++++-.+.||.+.|++.|..
T Consensus 289 ~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~-------- 360 (395)
T COG2807 289 VGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT-------- 360 (395)
T ss_pred HHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc--------
Confidence 777666655444444555555555443333333 33445688999999999999999999999999999999
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHhccCCc
Q 013609 406 SPESWRAVFFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
++|+..+.......++..+..+...|++.
T Consensus 361 --gsw~~~~~~l~~~~i~m~i~Gl~a~r~~~ 389 (395)
T COG2807 361 --GSWSAPLVLLALATLLMLIFGLRAGRNRY 389 (395)
T ss_pred --CChHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 69999999888888888777777666543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=244.64 Aligned_cols=376 Identities=13% Similarity=0.051 Sum_probs=267.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhccccccccccc-----CchH-HHHHHHHHHHHH
Q 013609 14 TFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKI-----GGRK-VLLFSFVLWSST 87 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~ 87 (439)
....++..+.........+|.+.+|.|.|.+|+|++..+... .+.++++|+++||+ |||| .+..+.++.+++
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 345577788888888999999999999999999999777765 69999999999999 8876 688888888777
Q ss_pred HhhhcCCc--chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc-cCCc
Q 013609 88 CFWLKLDP--NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY-NGPN 164 (439)
Q Consensus 88 ~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~wr 164 (439)
....++.+ ++++.+.+..++.++..+...+...+++.|++|+|||+++.++...+.++|..+++.+++.+.+. .|||
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 77766662 25788888888888888889999999999999999999999999999999999999999998885 5999
Q ss_pred hhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHH
Q 013609 165 SVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVN 244 (439)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (439)
..|++.++..++..+.. +..||++++++++. +..++..+++++++|||.++...+.
T Consensus 162 ~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~~~~l~~ 217 (402)
T PRK11902 162 NTYLLMAGLMLAGALTT-LWAPEPEVPARPPR-----------------------SLGEAVVGPLRDFFSRRGAWALLLL 217 (402)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCCCcccccccc-----------------------hhHHHHHHHHHHHHhCcCHHHHHHH
Confidence 99999888776654433 44555433211100 0001123456788999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhH-HHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHH
Q 013609 245 NFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPY-LNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVAS 323 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
.++..........+.+.++.+.+|+++.+.+.+....+ ++.+++..+.+++.||+++|+ ....+..+..
T Consensus 218 ~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~----------~l~~~~~~~~ 287 (402)
T PRK11902 218 IVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR----------SLMLFGVLQA 287 (402)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHH
Confidence 66666554444455556677778999999998876554 468899999999999999888 4444444333
Q ss_pred HHH---hhhcccC-ChhHHHHHHHHHHHhh----hcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhc
Q 013609 324 IAL---MALPIFR-SSNGAIFCSSIALGFL----ALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395 (439)
Q Consensus 324 ~~~---~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 395 (439)
+.. ......+ +.+.......+..... ............+..| ++..++.+....++..+++.+.|.+.|
T Consensus 288 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~G~l~~ 364 (402)
T PRK11902 288 VSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS---ATQYALLSALASVGRVYVGPTSGYLVE 364 (402)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2223332 2232222221111111 1112222333333333 344566666677788777789999999
Q ss_pred cccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCccCC
Q 013609 396 AAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGERIFD 439 (439)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
.. ||+..|.+.+++++++.++....+++-+++|
T Consensus 365 ~~-----------G~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (402)
T PRK11902 365 AY-----------GWPGFYLMTVVIALPGLALLWLMRGTIGRYE 397 (402)
T ss_pred Hh-----------ChHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 98 8999999999998888777766665544443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=244.86 Aligned_cols=376 Identities=13% Similarity=0.092 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH-HHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhh
Q 013609 12 ILTFISTCVCYIERVGFSIAYTAA-ADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFW 90 (439)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 90 (439)
+.+...+++.+.....+.|.+|.. .+++|.++.+.|++.+.+.+++.+++++.|+++||+|||+.++.+....+++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 84 (396)
T TIGR00882 5 WMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAP 84 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 344556677777777888888875 5568999999999999999999999999999999999999998877666554432
Q ss_pred h---cCCc----chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC
Q 013609 91 L---KLDP----NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 91 ~---~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 163 (439)
. .+.+ +.+..+++.|++.|++.+...+....+..|.. +++++.++......++|..++|.+++.+.+ .+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~ 161 (396)
T TIGR00882 85 FFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDP 161 (396)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCc
Confidence 2 2221 12345567789999998888888888887753 344567788888889999999999998865 699
Q ss_pred chhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHH
Q 013609 164 NSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVV 243 (439)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (439)
|.+|++.+.+.++..++.+...||+|+++..+ +. .+ . +++++...+.++++|||+++...+
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~------------~---~~~~~~~~~~~~~l~~~~~~~~~l 222 (396)
T TIGR00882 162 QIVFWLGSGFALILMLLLMFAKPKAPSSATVA-NA---LG------------A---NASAFSLKLALELFRQRKFWMFVL 222 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh-cc---cc------------c---ccCCCCHHHHHHHHcCCcHHHHHH
Confidence 99999998888876665555555543321110 00 00 0 011112235678899999887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---CCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHH
Q 013609 244 NNFTFHYALYVLMNWLPTYFELGL---QLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFM 320 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 320 (439)
..++....+.....+.|.|+++.+ +.+....+...+...+...++....+++.||+++|+ ...++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~----------~l~~~~~ 292 (396)
T TIGR00882 223 YVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN----------ALLIAGT 292 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------hHHHHHH
Confidence 766666666677778888888754 445556677788888888899999999999999998 7777777
Q ss_pred HHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHH-HHHHhhhhHHHHHHHHHHhhcccc
Q 013609 321 VASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGI-SNTAGTLAGIVGVDMTGKLLEAAK 398 (439)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~-~~~~~~~g~~i~~~~~g~l~~~~~ 398 (439)
+.++........++.+......++................++ .+++.+++..+. .+....+|+.++|.+.|++.|..
T Consensus 293 l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~- 371 (396)
T TIGR00882 293 IMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI- 371 (396)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-
Confidence 777666665555555444333222111111111111122233 344667776665 67889999999999999999988
Q ss_pred ccccCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 013609 399 TTYSDLSSPESWRAVFFIPGLLCILSSFVFLL 430 (439)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (439)
||+.+|.+.+++.++..+...+
T Consensus 372 ----------G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 372 ----------GFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988888777665543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=239.85 Aligned_cols=382 Identities=18% Similarity=0.121 Sum_probs=300.7
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhC-------------------------------------------
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAG------------------------------------------- 40 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------------------------------------- 40 (439)
++.|..++..+....+.+.+......|..|....|.+
T Consensus 16 r~~r~lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~ 95 (464)
T KOG3764|consen 16 RRSRPLILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSP 95 (464)
T ss_pred ccccceEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCc
Confidence 3444555566667777777777777777776554443
Q ss_pred -------CCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcc
Q 013609 41 -------VNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQG 113 (439)
Q Consensus 41 -------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 113 (439)
-+++++|++.+.+.+.+.+..++.|.+.||+|+|..+++|.+++..+++++++.. +++.++++|.+||+|.+
T Consensus 96 ~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~-sy~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 96 AEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN-SYPMLFVARSLQGVGSA 174 (464)
T ss_pred hhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc-hhHHHHHHHHHhhhhHH
Confidence 3456789999999999999999999999999999999999999999999999996 99999999999999999
Q ss_pred cchhhHHHHhhhccCCc-ccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccCCCCCC
Q 013609 114 FIFPSIHTVLAQWVPPH-ERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSE 192 (439)
Q Consensus 114 ~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (439)
....+..++++|.+|++ +|++++|+.-.+.++|..+||++||.+++..|.+.+|++.+.+.++...+.++..++++.+.
T Consensus 175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 99999999999999966 58999999999999999999999999999999999999999999998888877765433332
Q ss_pred CCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Q 013609 193 HPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQ 272 (439)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 272 (439)
+ ..+...++++++++|..+.........+.+......-++.+..+....+..
T Consensus 255 ~----------------------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w 306 (464)
T KOG3764|consen 255 D----------------------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGW 306 (464)
T ss_pred c----------------------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCc
Confidence 1 133345678999999999888887777777777788888988888885666
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHH---HHHHHHhh
Q 013609 273 EMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFC---SSIALGFL 349 (439)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 349 (439)
+.|..+....+...++..+.|.+.||++..++ .....+++..+......++.++....+.. ..++++..
T Consensus 307 ~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w--------l~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~ 378 (464)
T KOG3764|consen 307 EVGLAFLPASLSYAIGTNLFGKLADKYPHLRW--------LLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLA 378 (464)
T ss_pred ceeeeecccccchhccCchHHHHHHhcCchhH--------HHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999996551 25566666666666666666554432221 22222221
Q ss_pred h-cccccccccccccCCC---hhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHH
Q 013609 350 A-LGRAGFAVNHMDIAPR---YAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSS 425 (439)
Q Consensus 350 ~-~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (439)
. ...|...........+ ..|..+++......+|.++||.+.|.+.+.. |+++...+.++..++-.
T Consensus 379 dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i-----------GF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 379 DASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI-----------GFEWLMTIIGILNLIYA 447 (464)
T ss_pred HHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh-----------hHHHHHHHHHHHHHHHH
Confidence 1 1122222222222222 6799999999999999999999999999998 89998888888877766
Q ss_pred HHHHHhcc
Q 013609 426 FVFLLFST 433 (439)
Q Consensus 426 ~~~~~~~~ 433 (439)
-+..+++.
T Consensus 448 pvl~ll~~ 455 (464)
T KOG3764|consen 448 PVLLLLRI 455 (464)
T ss_pred HHHHHHHH
Confidence 66555543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=248.47 Aligned_cols=371 Identities=17% Similarity=0.187 Sum_probs=266.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhH-HHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHH
Q 013609 9 LIVILTFISTCVCYIERVGFS-IAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSST 87 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 87 (439)
.++..++..++....+...++ ..+-.+.+|.+....+.+.+.+++.++++++.++++.+.||++-.+.+....+++++.
T Consensus 45 ~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~ 124 (495)
T KOG2533|consen 45 FILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLF 124 (495)
T ss_pred HHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHH
Confidence 344445555666666665444 2233356899999999999999999999999999999999999999999999999888
Q ss_pred HhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhh------ccc
Q 013609 88 CFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLV------KYN 161 (439)
Q Consensus 88 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------~~~ 161 (439)
.++..... |++.+++.|++.|+.++..+|....+++.|+.++||++.++++.+..++|.++|.+++..+. ...
T Consensus 125 ~~~~~~~~-s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~ 203 (495)
T KOG2533|consen 125 GFLTAAVH-SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA 203 (495)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence 88777774 99999999999999999999999999999999999999999999999999999999998863 357
Q ss_pred CCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHH
Q 013609 162 GPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAI 241 (439)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (439)
||||.|++.++++++..++.++++|+.|.+..-..+++... ..++. ........+++.+...+++.+++|.+|..
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~----~~~~~-~~~~~~~~~~~~~~~~~~~a~~dp~vw~~ 278 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKEL----VVERL-RESPSGGIENKFKWKGFKEALKDPGVWPF 278 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHH----HHHHH-HhccCCCcccccCHHHHHHHHhchhHHHH
Confidence 99999999999999999999999999998541111111000 00000 00000011111445667899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHH
Q 013609 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMV 321 (439)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 321 (439)
.+..++.....+++.+|+|.++++..|+|..++..+..+..++++++.+++|.++||.+.-. ..|........+.
T Consensus 279 ~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-----~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 279 SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-----ARRLLFIVFLCLY 353 (495)
T ss_pred HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHH
Confidence 99999999999999999999999966799999999999999999999999999999964100 0111233333344
Q ss_pred HHHHHhhhcccCChhHHHHHHHHHHH-hhhcccccccccccccCCC-hhhHHHHHHHHHhhhhHHHHHHHH
Q 013609 322 ASIALMALPIFRSSNGAIFCSSIALG-FLALGRAGFAVNHMDIAPR-YAGIVMGISNTAGTLAGIVGVDMT 390 (439)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~~~~~ 390 (439)
..++...+...+...........+.. .................++ ++-+..+......+.++.++|.+.
T Consensus 354 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~ 424 (495)
T KOG2533|consen 354 AIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLF 424 (495)
T ss_pred HHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhc
Confidence 44443444444323322222222222 2222222233333444553 455555555555555555555443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-31 Score=277.01 Aligned_cols=370 Identities=12% Similarity=0.038 Sum_probs=256.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHH-HHHHhhCCCc-cchhhhhhhhhhhhhhhcccccccccccCchHHHHH---HHHHHHHH
Q 013609 13 LTFISTCVCYIERVGFSIAYT-AAADAAGVNQ-SSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLF---SFVLWSST 87 (439)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~ 87 (439)
..+++.+.+.+....+..... .+..+.+.+. ...++..+++.+.+.++++++|+++||+|||+++.. +.+...+.
T Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~ 98 (1140)
T PRK06814 19 TQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAAL 98 (1140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333 3333333332 346888899999999999999999999999997633 22233333
Q ss_pred HhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhH
Q 013609 88 CFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167 (439)
Q Consensus 88 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f 167 (439)
...+...+ |++.++++|+++|++.+...|+..+++.|++|+++|++++|+.+++.++|.++||++++++.+..+|++.|
T Consensus 99 ~~~~~~~~-s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~ 177 (1140)
T PRK06814 99 AIYGFHLN-SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV 177 (1140)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33333445 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHH
Q 013609 168 NAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFT 247 (439)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (439)
....+..++..+ ..+..|++++....... +. ...++....++.+.++|.++...+..++
T Consensus 178 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1140)
T PRK06814 178 ALLMGIAVLGWL-ASLFIPKTGNAAPDLKI-DR-------------------NIIRSTITLLKYAKADKRIWLAILGISW 236 (1140)
T ss_pred HHHHHHHHHHHH-HHhhCCCCCCCCCCCee-cc-------------------chHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 544444444333 33444444332111000 00 0001122356788899999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHh
Q 013609 248 FHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALM 327 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (439)
.++....+..++|.|+++.+|.++.+.+.+.+...++.+++.++.+++.|+..+++ ....+.++.++..+
T Consensus 237 ~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~----------~~~~~~~~~~~~~~ 306 (1140)
T PRK06814 237 FWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLL----------YVPIGALLMGLFGL 306 (1140)
T ss_pred HHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeee----------eehHHHHHHHHHHH
Confidence 88888888899999999989999999999999999999999999999998776665 23322222222222
Q ss_pred hhccc--------------------CChhHH-HHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHH
Q 013609 328 ALPIF--------------------RSSNGA-IFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVG 386 (439)
Q Consensus 328 ~~~~~--------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~ 386 (439)
.+.+. .+.+.. +..++++++.+....+.........+++.+|+++|+.+++.+++..++
T Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig 386 (1140)
T PRK06814 307 DLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAG 386 (1140)
T ss_pred HHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHH
Confidence 11111 222222 223333443333444444555566677899999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHH
Q 013609 387 VDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILS 424 (439)
Q Consensus 387 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (439)
+.+.|.+.+.. .++...+.+.+.+.++.
T Consensus 387 ~~~~g~l~~~~----------~~~~~~~~~~~~~~~~~ 414 (1140)
T PRK06814 387 TIILALLQALG----------FSIPWIILFIALANLIV 414 (1140)
T ss_pred HHHHHHHHHhc----------cCHHHHHHHHHHHHHHH
Confidence 99999998644 25666665555444333
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-31 Score=250.32 Aligned_cols=406 Identities=15% Similarity=0.136 Sum_probs=319.1
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWS 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 85 (439)
+-|.+....++......-....++...+.++++++-+.++++|+.++....+.+..|+.+.+.||+|.|++.+.|.++.+
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 34667777777777777777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcchHHHHHHH-HHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCc
Q 013609 86 STCFWLKLDPNNVFILVVA-RLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPN 164 (439)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr 164 (439)
++.++.++++ ++|++++. -++.|+|.+..+......+..+| +|+|+.+.|+...+.++|..+-|.+...+.+.+|||
T Consensus 123 ~g~~lssF~~-~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r 200 (509)
T KOG2504|consen 123 LGLLLSSFAT-SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWR 200 (509)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcH
Confidence 9999999997 88777655 56779999999999999999888 588999999999999999999999999999999999
Q ss_pred hhHHHHhHHHHHHHHHHhhhccCCCCCCCCCC---------------C-cccccCccCccc------chhhhhccccccc
Q 013609 165 SVFNAEAALGGMWSLLWFKYATDPPRSEHPKA---------------S-AAGFGESLLPMR------DQKVKVDNGGSAM 222 (439)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~------~~~~~~~~~~~~~ 222 (439)
+.+++.+.+.+-..+......|.+++..+++. + ..+..++..... .....+.+++.+.
T Consensus 201 ~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (509)
T KOG2504|consen 201 GALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRN 280 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccc
Confidence 99999999887766666666664443321100 0 000000000000 0000000000110
Q ss_pred -cccCch---HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q 013609 223 -KAAKIP---WKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH 298 (439)
Q Consensus 223 -~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 298 (439)
...... -.+++++|.++...+...+...++.....++|.|.++ .|++..+++.+.++.++..++++++.|++.|+
T Consensus 281 ~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~ 359 (509)
T KOG2504|consen 281 SPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADK 359 (509)
T ss_pred cchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc
Confidence 111111 1588999999999999999999999999999999996 89999999999999999999999999999999
Q ss_pred hhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHH
Q 013609 299 LITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNT 377 (439)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 377 (439)
...++ +.+..++.+..++..+..+..++........++...+.+...........+ +..++-..+.|+...
T Consensus 360 ~~~~~--------~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~ 431 (509)
T KOG2504|consen 360 PGIRA--------LVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLL 431 (509)
T ss_pred cccch--------HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHH
Confidence 88444 347777888888888777777776555444444444444444444444444 455889999999999
Q ss_pred HhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 378 AGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 378 ~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
++.++..+||++.|.+.|.. ++|...|+.+++..+++..+++..+
T Consensus 432 ~~gi~~l~gpPiag~~~d~t----------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 432 FQGIGALVGPPIAGLLYDIT----------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HhHHHHHcCcccceeeeecc----------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999998 5799999999999999987777665
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-30 Score=240.88 Aligned_cols=373 Identities=8% Similarity=-0.008 Sum_probs=258.4
Q ss_pred HHHHHHHHHHhhhhhH-HHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCc-hHHHHHHHHHHHHHHhhh
Q 013609 14 TFISTCVCYIERVGFS-IAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGG-RKVLLFSFVLWSSTCFWL 91 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~ 91 (439)
+++.+++.+....... +..+.+.+++|.+.+|+|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 4555666676666664 44555678899999999999999999999999999999999965 778888888888888888
Q ss_pred cCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhc--------cCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC
Q 013609 92 KLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQW--------VPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 92 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 163 (439)
.+.+ +++.+.+.|++.|++.+...+...++..++ .....|.+..| .+|.+++|.+++.+.....|
T Consensus 87 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~ 159 (418)
T TIGR00889 87 AQVT-TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSN 159 (418)
T ss_pred HHhc-CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchh
Confidence 8886 899999999999998887777766654322 22234555554 47888889888877433335
Q ss_pred chhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHH
Q 013609 164 NSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVV 243 (439)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (439)
+ +|++.++..++..+. .+..||+|+.++++ +. ...+....+.++++|+|+++...+
T Consensus 160 ~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~-~~---------------------~~~~~~~~~~~~~~k~~~~~~~~~ 215 (418)
T TIGR00889 160 I-QLYITAGSSALLGVF-ALTLPDIPVAKSTA-KM---------------------SIKVMLGLDAFILFKNKRMAIFFF 215 (418)
T ss_pred H-HHHHHHHHHHHHHHH-HhcCCCCCCCcccc-cc---------------------CHHHHhhhhHHHHhcCCCeeeHHH
Confidence 4 466666666655444 34556654322110 00 000111123457889999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcc--------cccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHH
Q 013609 244 NNFTFHYALYVLMNWLPTYFELGLQLSL--------QEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLN 315 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 315 (439)
..++..........+.|.++++ .|.++ ...+...+...+..+++.+..+++.||+++|+ .+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~----------~l 284 (418)
T TIGR00889 216 FSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK----------VM 284 (418)
T ss_pred HHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH----------HH
Confidence 7777766666677888888877 56554 45588888888899999999999999999998 77
Q ss_pred HHHHHHHHHHHhhhcccCC-h---hHHHH-HHHHHHHhhhcccccccccccc-cCCChhhHHHHHHH-HHhhhhHHHHHH
Q 013609 316 TVGFMVASIALMALPIFRS-S---NGAIF-CSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISN-TAGTLAGIVGVD 388 (439)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~-~~~~~g~~i~~~ 388 (439)
..+.++..+....+..... . ..... .++.+.+.. ...+.......+ .++++|++++|+.+ ....+|..++|.
T Consensus 285 ~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~ 363 (418)
T TIGR00889 285 LLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYI 363 (418)
T ss_pred HHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888777776655554321 1 11111 222222222 222333344444 45589999999997 567899999999
Q ss_pred HHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccC
Q 013609 389 MTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 389 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
+.|.+.|..+..+ ..+|+..|.+.+++.+++.++..++.++
T Consensus 364 l~G~l~~~~g~~~-----~~~~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 364 LSGVMVEKMFAYG-----TFDWQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred HHHHHHHHhcccc-----CCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999862100 0158999988888877776666665544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=237.63 Aligned_cols=402 Identities=13% Similarity=0.100 Sum_probs=288.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH--------HhhC--CCccc----hhhhhhhhhhhhhhhcccccccccccCchHH
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAAA--------DAAG--VNQSS----KGTILSTFYYGYACSQVPGGWAAQKIGGRKV 76 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~s~~~----~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 76 (439)
.....++.+-.++....+++..+.+. +.+| .++++ .+.+.+++.+|.++|++..|.++||+|||..
T Consensus 13 ~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~ 92 (485)
T KOG0569|consen 13 VIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNA 92 (485)
T ss_pred HHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 33344555556666666666555433 3455 33333 4777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCc--chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhh
Q 013609 77 LLFSFVLWSSTCFWLKLDP--NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFL 154 (439)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 154 (439)
+.++.++..++..+..++. +++++++++|++.|+..|......+-++.|..|.+.||..-...+.+..+|.+++..++
T Consensus 93 l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 93 LLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 9998888877776665441 38999999999999999999999999999999999999999999999999999997666
Q ss_pred h--hhhcccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCC-CCCcccccCc-----cCcccchh----hhhccccccc
Q 013609 155 P--SLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHP-KASAAGFGES-----LLPMRDQK----VKVDNGGSAM 222 (439)
Q Consensus 155 ~--~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~ 222 (439)
. .+.+...|++.+....+++++..+... +.||+|++.-. ++|++++.+. ..++.++. ..+.++++..
T Consensus 173 l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~-~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~ 251 (485)
T KOG0569|consen 173 LPSLLGTEDLWPYLLAFPLIPALLQLALLP-FLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELE 251 (485)
T ss_pred cHHhcCCCcchHHHHHHHHHHHHHHHHHHh-cCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccc
Confidence 3 233456799999998888877665554 67999999755 5555554311 11111111 1111112222
Q ss_pred cccCchHHhhhcchhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHH
Q 013609 223 KAAKIPWKRIVVNLPVWA-----IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVAD 297 (439)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 297 (439)
++...++++++++|..+. +.+....+..+.+....|...++++ .|+++.++-+.....++...+.++++.++.|
T Consensus 252 ~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid 330 (485)
T KOG0569|consen 252 KKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLID 330 (485)
T ss_pred cccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567789998866543 2333344455566677778888877 7999999999999999999999999999999
Q ss_pred HhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccC-----C-hhHH---HHHHHHHHHhh-hcccccccccccccCC-C
Q 013609 298 HLITKRILSVTRTRKFLNTVGFMVASIALMALPIFR-----S-SNGA---IFCSSIALGFL-ALGRAGFAVNHMDIAP-R 366 (439)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~ 366 (439)
|.|||+ ++..+..++.+..+++.... . .+.. +...+...... ....|.......|+.| +
T Consensus 331 ~~gRRp----------Lll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~ 400 (485)
T KOG0569|consen 331 RLGRRP----------LLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQS 400 (485)
T ss_pred hcCCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCcc
Confidence 999999 77777777777666554321 1 1211 22222222222 3334455566666655 7
Q ss_pred hhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCc
Q 013609 367 YAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 367 ~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
.|+.+.+....+..+...+-...+..+.+.. |- ..|+.+.+.+.+..+..++..+|+|
T Consensus 401 ~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~-----------g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 401 ARSAAQSVATAVNWLSNFIVGFAFPPLQNVI-----------GP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 9999999999999999999999999999988 33 6777777777777666666655554
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-30 Score=222.99 Aligned_cols=377 Identities=15% Similarity=0.144 Sum_probs=301.4
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
+........+....++.++......+.+|.+.+.++++..|.+.+...+..++.+.+++.|.+.+|+|+|+-++.++.++
T Consensus 9 ~~~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~ 88 (422)
T COG0738 9 KSVKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLY 88 (422)
T ss_pred CCceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHH
Confidence 33445566667777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhc---CCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc-
Q 013609 85 SSTCFWLK---LDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY- 160 (439)
Q Consensus 85 ~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~- 160 (439)
++++.+.. -. ++|..++++-++.|.|.+...++++++++...|+++..+-+++.+..+++|..++|++++.+..+
T Consensus 89 avg~~lF~pAa~~-~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~ 167 (422)
T COG0738 89 AVGAALFWPAASS-KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSG 167 (422)
T ss_pred HHHHHHHhhhhhh-hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 99999885 33 38999999999999999999999999999999998899999999999999999999999988762
Q ss_pred ------------------cCCchhHHHHhHHHHHHHHHHhhhc-cCCCCCCCCCCCcccccCccCcccchhhhhcccccc
Q 013609 161 ------------------NGPNSVFNAEAALGGMWSLLWFKYA-TDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSA 221 (439)
Q Consensus 161 ------------------~~wr~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (439)
..|+++|...+....+..+...... |+.++..++ +
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~--------------------------~ 221 (422)
T COG0738 168 VALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPS--------------------------L 221 (422)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccc--------------------------c
Confidence 2488889888877666555444332 222221111 0
Q ss_pred ccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhh
Q 013609 222 MKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLIT 301 (439)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 301 (439)
.++......+++++|.++...+..+++........++++.|+.+..|.+..+++...+....+.++|+.++.++.+|+..
T Consensus 222 ~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~ 301 (422)
T COG0738 222 GASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKP 301 (422)
T ss_pred cccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 11111145789999999999999999999999999999999999889999999999999999999999999999999998
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhh
Q 013609 302 KRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTL 381 (439)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 381 (439)
.| .+....+...+.++.....++........+++.+.....+..........+ ++...+.+ .-.+.-+
T Consensus 302 ~k----------~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~-~l~maiv 369 (422)
T COG0738 302 EK----------YLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSG-LLVMAIV 369 (422)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccce-eeeehee
Confidence 88 777766666666667777777666666777777777666666666666666 44333333 5556778
Q ss_pred hHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 382 AGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 382 g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
|+++-|++.|++.|.. +....+......|.+-.+.+.+.
T Consensus 370 GGAiiP~l~G~i~d~~-----------g~~~~~~~~pllc~lyV~~~~~~ 408 (422)
T COG0738 370 GGAIIPPLQGVIADMF-----------GIQLTFLIVPLLCYLYVLFFALI 408 (422)
T ss_pred cchHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 55555554555555444333333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=270.64 Aligned_cols=356 Identities=12% Similarity=0.074 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHH-HhhhhhHHHHHHHHHhhCCCcc--chhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHH
Q 013609 11 VILTFISTCVCY-IERVGFSIAYTAAADAAGVNQS--SKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSST 87 (439)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 87 (439)
+...+++.++.. .+......+.+.+..+++.+.+ ..+++.+++.+++.++++++|+++||+|||++++.+.++..+.
T Consensus 11 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~ 90 (1146)
T PRK08633 11 FLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGL 90 (1146)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHH
Confidence 333444444443 3444455556667677776544 4689999999999999999999999999999999988766555
Q ss_pred Hhhh---cCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc----
Q 013609 88 CFWL---KLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY---- 160 (439)
Q Consensus 88 ~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---- 160 (439)
.++. ..+. +++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++++.+.
T Consensus 91 ~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~ 169 (1146)
T PRK08633 91 TLLIVLAYYLG-WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGN 169 (1146)
T ss_pred HHHHHHHHHHc-cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5443 3444 8999999999999999999999999999999999999999999999999999999999998875
Q ss_pred ----c-CCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcc
Q 013609 161 ----N-GPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVN 235 (439)
Q Consensus 161 ----~-~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (439)
+ +|++.+.+..+...+..++..+..||.+++...+.+.++ ....++....++.++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~ 231 (1146)
T PRK08633 170 TPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKK------------------YLFPKLLWRNLKLLRSD 231 (1146)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccc------------------cccHHHHHHHHHHHhcC
Confidence 2 344444444443333333444455665544321110000 00111223456778888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc-ccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHH
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQ-EMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFL 314 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 314 (439)
|.++...+..++..........++|.|+++.+|++.. +.+++.+...++.+++.++.+++.||.++++ .
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~----------~ 301 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG----------L 301 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc----------c
Confidence 9888887777777777778888999999998999998 8999999999999999999999999998887 5
Q ss_pred HHHHHHHHHHHHhhhcccCChhHHHHH-HHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHh
Q 013609 315 NTVGFMVASIALMALPIFRSSNGAIFC-SSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKL 393 (439)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 393 (439)
+.++.++.+++.+.+....+.+..++. ++++.+......+.........+++.||+++|+.+.+.+++..+++.+.+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 302 VPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666555555444333333 2233333333333333333445668999999999999999998888777665
Q ss_pred hc
Q 013609 394 LE 395 (439)
Q Consensus 394 ~~ 395 (439)
..
T Consensus 382 ~~ 383 (1146)
T PRK08633 382 SG 383 (1146)
T ss_pred HH
Confidence 44
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=256.18 Aligned_cols=290 Identities=15% Similarity=0.132 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhh
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFW 90 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 90 (439)
+...++..+.........+..++.+.++|+++..+.|++.+.+.++++++.++.++++||+|||+.+.++.+++++++++
T Consensus 35 ~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll 114 (633)
T TIGR00805 35 SLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL 114 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence 34455577777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCc-------------------------------------------------c-hHHHHHHHHHHHhhhcccchhhHH
Q 013609 91 LKLDP-------------------------------------------------N-NVFILVVARLLVGVSQGFIFPSIH 120 (439)
Q Consensus 91 ~~~~~-------------------------------------------------~-~~~~l~~~r~l~G~~~~~~~~~~~ 120 (439)
+++.+ + .+..++++|+++|+|.+...+...
T Consensus 115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~ 194 (633)
T TIGR00805 115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI 194 (633)
T ss_pred HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence 87752 0 256788999999999999999999
Q ss_pred HHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhccc----------------------CCchhHHHHhHHHHHHH
Q 013609 121 TVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN----------------------GPNSVFNAEAALGGMWS 178 (439)
Q Consensus 121 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------------~wr~~f~~~~~~~~~~~ 178 (439)
+++.|++|+++|++++++......+|..+|+++++.+.+.+ +|+..|++.+++.++..
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~ 274 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS 274 (633)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887632 26677888888877766
Q ss_pred HHHhhhccCCCCCCCC-CCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 013609 179 LLWFKYATDPPRSEHP-KASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMN 257 (439)
Q Consensus 179 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
+..+++.++.|++..+ +.+.++.... +..+... ........++....++++++||.++...+..++.....+++..
T Consensus 275 v~l~~~p~~lp~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~ 351 (633)
T TIGR00805 275 IPFFFFPKALPKEGKRVNVDVHETEKL--EKSEDKS-RKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYIT 351 (633)
T ss_pred HHHHhCccccCCcccccchhhhhhhcc--ccccccc-chhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6555444444432211 1111110000 0000000 0000011122234567899999999999999999999999999
Q ss_pred HHHHHHHHhhCCcccccchhhhhhHH-HHHHHHHHHHHHHHHhhhcc
Q 013609 258 WLPTYFELGLQLSLQEMGSSKMMPYL-NMFIFSNIGGVVADHLITKR 303 (439)
Q Consensus 258 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~ 303 (439)
++|.|+++.+|+++.+++.+.....+ +.+++.+++|+++||++.+.
T Consensus 352 ~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~ 398 (633)
T TIGR00805 352 FLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNV 398 (633)
T ss_pred HHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccH
Confidence 99999999999999999998877666 56889999999999998554
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=241.33 Aligned_cols=379 Identities=15% Similarity=0.169 Sum_probs=297.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHH
Q 013609 9 LIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTC 88 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 88 (439)
..+..++.+..+..++..+.....+-+..+..-|+..++++.++..+...+.++++|.++||++|||+++.+-++.++..
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA 89 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 45566778888888888889999999888888899999999999999999999999999999999999999887766554
Q ss_pred hhhcCC----cchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCc
Q 013609 89 FWLKLD----PNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPN 164 (439)
Q Consensus 89 ~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr 164 (439)
+..++. ..+.+.+++.-++.|++.+...|+.++++.|..|+++..++.++.+...++...+||.++|.+...+|-.
T Consensus 90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~ 169 (524)
T PF05977_consen 90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAA 169 (524)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 333221 1278999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred hhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHH
Q 013609 165 SVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVN 244 (439)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (439)
+.|.+.++..++.........++.++++.++ +...++.++.++-+.++|.+......
T Consensus 170 ~~f~inalsfl~~i~~l~~~~~~~~~~~~~~-----------------------e~~~~~l~~G~ryv~~~~~l~~~l~~ 226 (524)
T PF05977_consen 170 AAFLINALSFLISILALLRWKPPPPPSSLPR-----------------------ERFFSALREGLRYVRSSPPLRSVLLR 226 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccccch-----------------------hhhhhhHHHHHHHHhcchHHHHHHHH
Confidence 9999988766554444443332222111100 01123334455666677877766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHH
Q 013609 245 NFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASI 324 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
.++.+.....+...+|.+.++.+|.++...|++.+..+++.++|.++.+++.+|.++++ ++..+.+..++
T Consensus 227 ~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~----------lv~~~~~~~a~ 296 (524)
T PF05977_consen 227 SFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR----------LVLLASLLFAL 296 (524)
T ss_pred HHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch----------hhHHHHHHHHH
Confidence 66666666667778999999999999999999999999999999999999998888877 77778888888
Q ss_pred HHhhhcccCChhHHHHHHHH-HHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccC
Q 013609 325 ALMALPIFRSSNGAIFCSSI-ALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSD 403 (439)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~ 403 (439)
.++.+.+.++.+......++ +.+................|++.||++++++++....+..+|..+.|.+.|..
T Consensus 297 ~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~------ 370 (524)
T PF05977_consen 297 ALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF------ 370 (524)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 88888887766654444433 33323333333344455566689999999999999999999999999999998
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 404 LSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
+.+.++.+.++..+++.++....
T Consensus 371 -----g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 371 -----GVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888877776666666544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=215.39 Aligned_cols=405 Identities=16% Similarity=0.155 Sum_probs=302.2
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
+.+|........+..-+.+.....+.+.|...+.++.+..|..++......+..+++..+|..+|++|||+.+.+.....
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 56777788888888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCc
Q 013609 85 SSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPN 164 (439)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr 164 (439)
.+...+.+.++ |+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....+.-.....+|||
T Consensus 154 ~v~~~is~~sp-nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr 230 (528)
T KOG0253|consen 154 GVFGVISGASP-NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWR 230 (528)
T ss_pred HHHHHhhcCCC-CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999 999999999999999998 899999999999999999887777 999999999999998888999999
Q ss_pred hhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCc----------cc----chhhhhccc--------cccc
Q 013609 165 SVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLP----------MR----DQKVKVDNG--------GSAM 222 (439)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~----~~~~~~~~~--------~~~~ 222 (439)
|.......+..+.+. ..++.||+|+....++++.++.+.... .. .....++++ .+..
T Consensus 231 ~~l~~~~~pl~~~a~-f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ 309 (528)
T KOG0253|consen 231 YLLFTSSTPLMFAAR-FLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAA 309 (528)
T ss_pred HHHHHHHhHHHHHHH-HHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccc
Confidence 998888866555444 445778999987666665543311000 00 000000000 0111
Q ss_pred cccCchHHhhhcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--C-----------------Ccccccchhhhh
Q 013609 223 KAAKIPWKRIVVN---LPVWAIVVNNFTFHYALYVLMNWLPTYFELGL--Q-----------------LSLQEMGSSKMM 280 (439)
Q Consensus 223 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g-----------------~~~~~~~~~~~~ 280 (439)
++......+++.. +.........+...+.+++........++... + .+...--.-..+
T Consensus 310 ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdlli 389 (528)
T KOG0253|consen 310 KEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLI 389 (528)
T ss_pred cccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHH
Confidence 2222333334321 23334455556666666665555555444311 0 011111112345
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccc
Q 013609 281 PYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNH 360 (439)
Q Consensus 281 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (439)
..+....|.++.+++.||+|||+ .+..+++++.+..+.+...........+.+.+-.+..........+.
T Consensus 390 tslaefPGlLIt~~iverlGRKk----------TMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYt 459 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKK----------TMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYT 459 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchh----------HHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEec
Confidence 56788999999999999999999 88999998888887776655555555555555556666667888899
Q ss_pred cccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCc
Q 013609 361 MDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 361 ~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
.|+.| ..|+++.|....+..+|+++.|.++ ...+. .-..+..+.+.+++++.+...+++-++|
T Consensus 460 PEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~------------s~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 460 PEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAEL------------STSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred CcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhcc------------ceeehHHHHHHHHHHHHHHheeeeeccC
Confidence 99988 6899999999999999999999998 33333 3456677788888888888888776654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=230.04 Aligned_cols=368 Identities=11% Similarity=0.008 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhh--hhhhhhhhhhhcccc-cccccccCchHHHHHHHHHH-HH
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTI--LSTFYYGYACSQVPG-GWAAQKIGGRKVLLFSFVLW-SS 86 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~--~s~~~~~~~~~~~~~-g~l~dr~Grr~~l~~~~~~~-~~ 86 (439)
...+...++..+.......+.+|.+.+|.|.|.+++|.+ .+...+...+.+|++ ++..||+||||..++.+.+. ..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 456677788999999999999999999999999999997 467788888888888 44799999999976655332 21
Q ss_pred HHhh---hcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC
Q 013609 87 TCFW---LKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 87 ~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 163 (439)
.... .....+....++..-.+..+..+...+...++..|..++++++...+....+..+|..+|+...+++.++.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw 162 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ 162 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 1211 2223212344455556666777778888888999999888889999999889899999999999999999999
Q ss_pred chhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHH
Q 013609 164 NSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVV 243 (439)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (439)
|..|++.+++.++..+..++..|++++++++ +++...++++.+|+|.++....
T Consensus 163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~~~~~~~~~~ 215 (390)
T TIGR02718 163 RPAFLLVACVPLASLVCVLWLKDRAVASPEA---------------------------PLARRASLFRFFRRPLAWSLLA 215 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcCcccc---------------------------chhhHHHHHHHHcCcCHHHHHH
Confidence 9999999988877666655454443221100 0111234678899999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHH-HHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHH
Q 013609 244 NNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYL-NMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVA 322 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (439)
..++...+......+.+.|++| .|+++++.+.+...... ..+++..+.|++.||+++|+ ....+..+.
T Consensus 216 ~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~----------~l~~~~~~~ 284 (390)
T TIGR02718 216 LALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR----------TFILGVGLA 284 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH----------HHHHHHHHH
Confidence 8888888888888899999988 79999999998877764 56677899999999999988 555554443
Q ss_pred HHHHh-hhcc-----cCChhHHHHHHHHHHHhhhcccc-cccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhh
Q 013609 323 SIALM-ALPI-----FRSSNGAIFCSSIALGFLALGRA-GFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLL 394 (439)
Q Consensus 323 ~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 394 (439)
+...+ .... .+..........+.....+...+ .........++ +++++.+++.+...++|..++|.+.|.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~ 364 (390)
T TIGR02718 285 GSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT 364 (390)
T ss_pred HHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1111 11111112221221112222222 22333445555 78999999999999999999999999999
Q ss_pred ccccccccCCCCcccchhHHHHHHHHHHHHHHH
Q 013609 395 EAAKTTYSDLSSPESWRAVFFIPGLLCILSSFV 427 (439)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (439)
|.. |++..|.+.+++.+++.+.
T Consensus 365 ~~~-----------G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 365 DRF-----------GYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHH-----------ccHHHHHHHHHHHHHHHHH
Confidence 987 7888998888777776544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=235.08 Aligned_cols=320 Identities=12% Similarity=0.004 Sum_probs=234.1
Q ss_pred hhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhccccccccccc-----CchHH-HHHHHHHHHHHHhhhcCCcc--
Q 013609 25 RVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKI-----GGRKV-LLFSFVLWSSTCFWLKLDPN-- 96 (439)
Q Consensus 25 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~~~-- 96 (439)
....++..|.+.+|+|+|.+|+|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++.....++.++
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 3567788999999999999999999765 455555 89999999998 89997 46677777777666667631
Q ss_pred hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC--------CchhHH
Q 013609 97 NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG--------PNSVFN 168 (439)
Q Consensus 97 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--------wr~~f~ 168 (439)
+.+.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+.+..+ ||..|+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~ 161 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF 161 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence 666777888888988888899999999999999999999999999999999999999999988888 999999
Q ss_pred HHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchh---HHHHHHHH
Q 013609 169 AEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLP---VWAIVVNN 245 (439)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 245 (439)
+.++..++..+..++..||++++++.+ + ++.++..+++++++++|. ++...+..
T Consensus 162 i~ai~~l~~~~~~~~~~~e~~~~~~~~-~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEPQEDASVP-K----------------------PLTQAVLKPIREFFQRKNMIQALLLLLLI 218 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccc-h----------------------hHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 998877776555554555533221000 0 001112335667777775 77777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhH-HHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHH
Q 013609 246 FTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPY-LNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASI 324 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
++.....+....+.|.|+++ +|+++.+.+.+....+ +..+++.++.+++.||+++|+ .+..+.++.++
T Consensus 219 ~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~----------~l~~~~~~~~~ 287 (356)
T TIGR00901 219 VLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY----------ALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH----------HHHHHHHHHHH
Confidence 77788888889999999998 8999999988777665 567899999999999999988 55555555555
Q ss_pred HHhhhccc-----------CChhHHHHHHHH-HHHhhhcccccccccccccCCChhhHHHHHHHHHhh
Q 013609 325 ALMALPIF-----------RSSNGAIFCSSI-ALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGT 380 (439)
Q Consensus 325 ~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 380 (439)
....+.+. ++.+......++ .++.............+..|+++||+..|+.+...+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 288 TNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 44433321 112222222222 222223333334444555667899999999888765
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=233.46 Aligned_cols=409 Identities=12% Similarity=0.053 Sum_probs=271.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHH-h--hCCCccchhhhhhhhhhhhhhhcccccccccc-cCchHHHHHHHHHH
Q 013609 9 LIVILTFISTCVCYIERVGFSIAYTAAAD-A--AGVNQSSKGTILSTFYYGYACSQVPGGWAAQK-IGGRKVLLFSFVLW 84 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~ 84 (439)
..+..+++..++..+..+...+.+|.+.+ + +|.+..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 34556667777777887778888887654 4 89999999999999999999999999999999 89999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcc---cchhhHHHhhhhhHHHHHHhhhhhhhhccc
Q 013609 85 SSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHE---RSRSVSLTTSGMYLGAAMGMLFLPSLVKYN 161 (439)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 161 (439)
+++.++.++++ +++.+.+.|.+.|+|.|...+...++++|++|+++ |++++++.+.+.++|..+||.+++.+.++.
T Consensus 90 ~~g~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~ 168 (475)
T TIGR00924 90 MLGHFMLAMSI-YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY 168 (475)
T ss_pred HHHHHHHHhcc-cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999986 88999999999999999999999999999998764 888999999999999999999999999989
Q ss_pred CCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchh-----------h-hhccc-----------
Q 013609 162 GPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQK-----------V-KVDNG----------- 218 (439)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~----------- 218 (439)
|||+.|.+.++..++..+. +...++..++..++.+..+..+++....... . ...+.
T Consensus 169 g~~~~f~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (475)
T TIGR00924 169 GYHVGFNLAAVGMVIGLLT-FFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVT 247 (475)
T ss_pred ChHHHHHHHHHHHHHHHHH-HHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999987554443333 3232222111100000000000000000000 0 00000
Q ss_pred -------cccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc----cchhhhhhHHHHHH
Q 013609 219 -------GSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQE----MGSSKMMPYLNMFI 287 (439)
Q Consensus 219 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~ 287 (439)
+....++.....+..|...+..+.+...+.+..+....+.++.+.++..+.+... .+++.+...+..++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil 327 (475)
T TIGR00924 248 LAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVV 327 (475)
T ss_pred HHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHH
Confidence 0000001111111122234455556566667777777777888887754443222 56777888888888
Q ss_pred HHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcc---------cCChhHHHH-HHHHHHHhhhccccccc
Q 013609 288 FSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPI---------FRSSNGAIF-CSSIALGFLALGRAGFA 357 (439)
Q Consensus 288 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~ 357 (439)
.+++..++..|..+|..... ...-+.+|.++.++++..... ..+.++.+. .++...+-....+....
T Consensus 328 ~~p~~~~~~~~l~~~~~~~~---~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~ 404 (475)
T TIGR00924 328 GSPVLAMIWTRLGRKGKDPT---TPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLS 404 (475)
T ss_pred HHHHHHHHHHHHHhCCCCCC---cHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 87776666666666521100 111135666666666655442 123333333 33334444444444444
Q ss_pred ccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 358 VNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 358 ~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
...+..|++.||+.+|+......+|..+++.+.....+.. ++...|...++.+++..++.++..+
T Consensus 405 ~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 405 WWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ-----------GVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556689999999999999999999998888776654 6777777777776666665555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=231.80 Aligned_cols=418 Identities=14% Similarity=0.099 Sum_probs=263.2
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccc-cCchHHHHHHHH
Q 013609 5 PKRYLIVILTFISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQK-IGGRKVLLFSFV 82 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~ 82 (439)
+++++.+..++...+...+..+...+.++. +.+++|.+.++.+++.+.+.....+..+++|+++|| +||||++.++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 345566666777777777777766655554 678899999999999999998888889999999999 999999999999
Q ss_pred HHHHHHhhhcCCcchHH-HHHHHHHHHhhhcccchhhHHHHhhhccCCc--ccchhhHHHhhhhhHHHHHHhhhhhhhhc
Q 013609 83 LWSSTCFWLKLDPNNVF-ILVVARLLVGVSQGFIFPSIHTVLAQWVPPH--ERSRSVSLTTSGMYLGAAMGMLFLPSLVK 159 (439)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 159 (439)
++.++.+.+++++ +.. .++++|.++|+|.|...|...+++.|.+|++ +|++++++++.+.++|..+||.+++++.+
T Consensus 90 ~~~~g~~~~~~~~-~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 90 VLAIGYFMTGMSL-LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred HHHHHHHHHHHhc-cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 544 4558999999999999999999999999877 45789999999999999999999999999
Q ss_pred ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCC--C---CCCcccccC---------------ccCcccchhhhhc---
Q 013609 160 YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEH--P---KASAAGFGE---------------SLLPMRDQKVKVD--- 216 (439)
Q Consensus 160 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~---------------~~~~~~~~~~~~~--- 216 (439)
+.|||+.|++.++ +++..++.+...++..++.. + +.|..+... .+...........
T Consensus 169 ~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (489)
T PRK10207 169 KFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSI 247 (489)
T ss_pred hhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999998654 44433333333332222111 1 011100000 0000000000000
Q ss_pred --cccccccccCchHHhhhcchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhCCccc----ccchhhhhhHHHHHHH
Q 013609 217 --NGGSAMKAAKIPWKRIVVNLPVWAIVVN--NFTFHYALYVLMNWLPTYFELGLQLSLQ----EMGSSKMMPYLNMFIF 288 (439)
Q Consensus 217 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~ 288 (439)
....-.++.+. .+.+|+|.+....+. ....+..+....+.++.+.++..+.+.. ....+.....+..++.
T Consensus 248 i~~~~f~~~~~~~--~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~ 325 (489)
T PRK10207 248 VVTIIFFREAFKL--DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVA 325 (489)
T ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHH
Confidence 00000000000 145566665443322 4445555566667788888753332110 1223334455667678
Q ss_pred HHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhh-------ccc---CChh-HHHHHHHHHHHhhhccccccc
Q 013609 289 SNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMAL-------PIF---RSSN-GAIFCSSIALGFLALGRAGFA 357 (439)
Q Consensus 289 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~ 357 (439)
.++.+++.||.++|+..... . .-..+++++.+++++.+ ... .+.+ ......+.+.+.....++...
T Consensus 326 ~pl~~~l~~rl~~r~~~~~~-~--~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~ 402 (489)
T PRK10207 326 SPILAGIYTHLGSKGKDLSM-P--MKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLA 402 (489)
T ss_pred HHHHHHHHHHHhhCCCCCCc-H--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88889999999988621111 0 12334444444444321 111 1222 223344445555555556667
Q ss_pred ccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 013609 358 VNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLL 430 (439)
Q Consensus 358 ~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (439)
......|++.++.++|+.+...++|+.++..+......... ..++......+...|...++..+++.++.+.
T Consensus 403 ~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 403 MIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN-ITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888999999999999999999999888765532110 0000011124667777777766655555544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=225.78 Aligned_cols=408 Identities=13% Similarity=0.123 Sum_probs=283.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcC
Q 013609 14 TFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKL 93 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 93 (439)
.++.....++.....+.+++.+.+|+|- ..+..|+.+.+.++.++..++.|+++|.||||+.++.+.++..+|++.++-
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at 127 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT 127 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence 3444444556666667888999999995 577889999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHH
Q 013609 94 DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAAL 173 (439)
Q Consensus 94 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~ 173 (439)
++ |...++.+..+.|+|.|.. ......++|..|.|.|....++...........++.++..+..+.+|||.|++..+.
T Consensus 128 A~-~~~~~iag~~l~GvgaG~~-~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~ 205 (599)
T PF06609_consen 128 AQ-NMNTFIAGMVLYGVGAGVQ-ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIW 205 (599)
T ss_pred CC-cHHHHHHHHHHHHHhhHHH-HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHH
Confidence 97 9999999999999997755 456667899999999988888777666666667788887777778999999999988
Q ss_pred HHHHHHHHhhhccCCCCCC-C-CCCCccccc-------------------------Cc-cCcccchh------------h
Q 013609 174 GGMWSLLWFKYATDPPRSE-H-PKASAAGFG-------------------------ES-LLPMRDQK------------V 213 (439)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~-------------------------~~-~~~~~~~~------------~ 213 (439)
..+..++.+++..++++++ + ++....+.. .. ..++++.. .
T Consensus 206 ~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv 285 (599)
T PF06609_consen 206 SGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLV 285 (599)
T ss_pred HHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHH
Confidence 7776555544443222211 1 111111110 11 11222211 0
Q ss_pred hhccccc-c-ccccCchHHhhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc---ccchhhhhhHHHHHH
Q 013609 214 KVDNGGS-A-MKAAKIPWKRIVVN-LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQ---EMGSSKMMPYLNMFI 287 (439)
Q Consensus 214 ~~~~~~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~ 287 (439)
...-.|. . .+++..| .+++|+ |.+...++..+.....++....+.|+.....++-++. +.++.....+.+...
T Consensus 286 ~F~~wE~~~~~~~Pl~P-~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~ 364 (599)
T PF06609_consen 286 AFVVWEWFGAPKDPLFP-HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCA 364 (599)
T ss_pred HHHHhhhhccCCCCcCC-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHH
Confidence 0011121 1 2344555 578887 5566666777778878888889999988887777664 567778888888999
Q ss_pred HHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcc--cCChhHH-HHHHHHHHHhhhcccccccccccccC
Q 013609 288 FSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPI--FRSSNGA-IFCSSIALGFLALGRAGFAVNHMDIA 364 (439)
Q Consensus 288 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (439)
+..+.+.+..|+++-| +.++++.+++.+++..+.. .++.... ...++.+++.+....+.........+
T Consensus 365 g~~i~g~l~~~ir~~K---------w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p 435 (599)
T PF06609_consen 365 GAVILGLLFSKIRHIK---------WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVP 435 (599)
T ss_pred HHHHHHHHHHHccchh---------HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeC
Confidence 9999999998876555 3555565555544444433 2333332 23333344444444444444455667
Q ss_pred CChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccccc------------------------------------------
Q 013609 365 PRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYS------------------------------------------ 402 (439)
Q Consensus 365 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~------------------------------------------ 402 (439)
+++.|++.|+..+++.+|+.++..+...+..+.-..+.
T Consensus 436 ~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~ 515 (599)
T PF06609_consen 436 DEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPE 515 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHH
Confidence 78999999999999999999999998776643221100
Q ss_pred ---------CCCCcccchhHHHHHHHHHHHHHHHHHHhccC
Q 013609 403 ---------DLSSPESWRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 403 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
......+|+.+|+....+.+++.+..++++..
T Consensus 516 i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~ 556 (599)
T PF06609_consen 516 IIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDI 556 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 01133467888888888888888887776543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=231.52 Aligned_cols=341 Identities=14% Similarity=0.078 Sum_probs=245.1
Q ss_pred HhhhhhHH-HHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccc----cCchH-HHHHHHHHHHHHHhhhcCCcc
Q 013609 23 IERVGFSI-AYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQK----IGGRK-VLLFSFVLWSSTCFWLKLDPN 96 (439)
Q Consensus 23 ~~~~~~~~-~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~ 96 (439)
.......+ ..+.+.+++|+++.++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++.+.++
T Consensus 13 ~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~ 92 (437)
T TIGR00792 13 FIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD 92 (437)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC
Confidence 33334443 4455777899999999999999999999999999999998 67755 566788888888887776652
Q ss_pred -----hHHHHHHHHHHHhhhcccchhhHHHHhhhcc-CCcccchhhHHHhhhhhHHHHHHhhhhhhhh-------cccCC
Q 013609 97 -----NVFILVVARLLVGVSQGFIFPSIHTVLAQWV-PPHERSRSVSLTTSGMYLGAAMGMLFLPSLV-------KYNGP 163 (439)
Q Consensus 97 -----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-------~~~~w 163 (439)
....+++.+++.+++.+...+...++..|.. +++||++..++.+.+..+|..+++.+.+.+. +..+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~ 172 (437)
T TIGR00792 93 FSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGW 172 (437)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccH
Confidence 2467778889999998888888888999987 4689999999999888888877766655443 24689
Q ss_pred chhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHH
Q 013609 164 NSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVV 243 (439)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (439)
|+.+.+.++++++..++..+..||++++.+++ + +++.+..+.++++++||.++...+
T Consensus 173 ~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~----~-------------------~~~~~~~~~~~~l~~~~~~~~~~~ 229 (437)
T TIGR00792 173 FMFALVLALIGVVSLIICFFGTKERYSEIPKN----I-------------------EKKLSLKQIFKALFKNDQLLILCL 229 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc----c-------------------ccCCCHHHHHHHHhCCHHHHHHHH
Confidence 99999999888887776666666654221100 0 001122345678889999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHH
Q 013609 244 NNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVAS 323 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..++...+......+.+.|.++..+ ++.+.+.+.....++.+++.++.+++.||+++|+ ....+..+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~----------~~~~~~~~~~ 298 (437)
T TIGR00792 230 AYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI----------LFAGGILLMV 298 (437)
T ss_pred HHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH----------HHHHHHHHHH
Confidence 8888888777776677777766555 4555666777778899999999999999999988 6677776666
Q ss_pred HHHhhhcccC-ChhHHHHHHH-HHHHhhhccccccccccccc--------CCChhhHHHHHHHHHhhhhHHHHHHHHHHh
Q 013609 324 IALMALPIFR-SSNGAIFCSS-IALGFLALGRAGFAVNHMDI--------APRYAGIVMGISNTAGTLAGIVGVDMTGKL 393 (439)
Q Consensus 324 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 393 (439)
++...+...+ +........+ .+.+.... .+.......+. .++.+|.+.|+.+....+|..+++.+.|.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 299 LGYLIFFFAGSNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554433 2222222222 22222222 23333333332 235689999999999999999999999999
Q ss_pred hcccc
Q 013609 394 LEAAK 398 (439)
Q Consensus 394 ~~~~~ 398 (439)
.+..+
T Consensus 378 l~~~G 382 (437)
T TIGR00792 378 LGIIG 382 (437)
T ss_pred HHHcC
Confidence 98764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=210.94 Aligned_cols=334 Identities=16% Similarity=0.104 Sum_probs=227.9
Q ss_pred cchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHh
Q 013609 44 SSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVL 123 (439)
Q Consensus 44 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 123 (439)
.-.|.+.+.|++++.+.++.+|.++||+|||+++++|++..++...+.+++. |+..++++|++.|+..| ......+++
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~-~F~afv~aR~l~Gi~kg-nl~v~rAii 145 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR-NFAAFVLARFLGGIFKG-NLSVIRAII 145 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhccC-chHHHHHHH
Confidence 3469999999999999999999999999999999999999999999999996 99777777999999988 668899999
Q ss_pred hhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc---ccCCchhHHHHhHHHH----HHHHHHhhhccCCCCCCCCCC
Q 013609 124 AQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK---YNGPNSVFNAEAALGG----MWSLLWFKYATDPPRSEHPKA 196 (439)
Q Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~~wr~~f~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 196 (439)
+|.+++|+|+++++..+...++|.++||.+|+++.+ ..| +.+|.....+.. .-.....+++||+-+.++++
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~- 223 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRN- 223 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhc-
Confidence 999999999999999999999999999999999987 222 223333222222 11223344667764333222
Q ss_pred CcccccCccCcccchhhhhccccccccccCchHHhhhcchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013609 197 SAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPV-------WAIVVNNFTFHYALYVLMNWLPTYFELGLQL 269 (439)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 269 (439)
|++....+..+ ++. +..+.....-...+||++. ....+..+.+...+..+.+..+.+-.+.+|+
T Consensus 224 ~~~~~~~~~~~-~~~--------~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ 294 (451)
T KOG2615|consen 224 DEHSTLQEAAD-DRL--------ALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGY 294 (451)
T ss_pred ccccchhhhhh-hhh--------hhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCC
Confidence 11110000000 000 0000001111223344322 1233334444444444555555555667899
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhh
Q 013609 270 SLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFL 349 (439)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (439)
++.|.|.+++..++.+.+.+.......||.+... +..+..+..++...++++.....+........+..+..
T Consensus 295 ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~--------~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~ 366 (451)
T KOG2615|consen 295 SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNI--------KAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFST 366 (451)
T ss_pred ChhhheeeeehhhHHHHHHHHhccccccccccch--------hhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence 9999999999888888877776666666655111 12556666666666666666666555555555544445
Q ss_pred hccccccccccccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccc
Q 013609 350 ALGRAGFAVNHMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAK 398 (439)
Q Consensus 350 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 398 (439)
....+......... ++++||+.+|+....+.++.++||.+.|.+..+..
T Consensus 367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~ 416 (451)
T KOG2615|consen 367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQ 416 (451)
T ss_pred HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEec
Confidence 55555555555544 55899999999999999999999999999998874
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=236.07 Aligned_cols=401 Identities=17% Similarity=0.168 Sum_probs=279.7
Q ss_pred HHHHHHHHHHHHHHh--hhhhHHHHHHHHHhhCC---Cc----cchhhhhhhhhhhhhhhcccccccccccCchHHHHHH
Q 013609 10 IVILTFISTCVCYIE--RVGFSIAYTAAADAAGV---NQ----SSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFS 80 (439)
Q Consensus 10 ~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~---s~----~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~ 80 (439)
......++.+..+.+ ....++....+.++... +. .+.+++.+.+.++..+++++.|+++|++|||+.++++
T Consensus 46 ~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~ 125 (513)
T KOG0254|consen 46 LALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLA 125 (513)
T ss_pred HHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444555555554 45666777777664321 12 2448999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc
Q 013609 81 FVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY 160 (439)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 160 (439)
.+++.++.+++++++ |+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++....+.
T Consensus 126 ~~~~~iG~ii~~~a~-~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~ 204 (513)
T KOG0254|consen 126 VVLFLIGAIIIALAP-SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV 204 (513)
T ss_pred HHHHHHHHHHHHHhh-hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 999999999999997 9999999999999999999999999999999999999999999999999999997666555433
Q ss_pred -cCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCc-----c-Cccc-chhh-hhc---cccccccccCch
Q 013609 161 -NGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGES-----L-LPMR-DQKV-KVD---NGGSAMKAAKIP 228 (439)
Q Consensus 161 -~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~-~~~~-~~~---~~~~~~~~~~~~ 228 (439)
.+||..+.+..+++++..+. .++.||+|++..++.+.++..+. . .+++ +... ... ..+....+....
T Consensus 205 ~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (513)
T KOG0254|consen 205 YAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKAS 283 (513)
T ss_pred CccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccccccc
Confidence 58999999999888887777 77889999987665555443311 0 0010 0000 000 000000111112
Q ss_pred HHhhh----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 013609 229 WKRIV----VNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRI 304 (439)
Q Consensus 229 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 304 (439)
+++++ +++.++...+..+.+..+.+....|.+.+++. .|.+... .......++...++..+...+.||+|||+
T Consensus 284 ~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~- 360 (513)
T KOG0254|consen 284 WGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRK- 360 (513)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHH-
Confidence 23333 33445566666777777778888999999887 5666443 45556777888888888899999999999
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhhcccC----C--------hhHHHHHHHH-HHHhhhcccccccccccccCC-ChhhH
Q 013609 305 LSVTRTRKFLNTVGFMVASIALMALPIFR----S--------SNGAIFCSSI-ALGFLALGRAGFAVNHMDIAP-RYAGI 370 (439)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~ 370 (439)
++..+...+.++.+++.... . .+..+...++ ...+.....+..+....|..| +.|+.
T Consensus 361 ---------lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~ 431 (513)
T KOG0254|consen 361 ---------LLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSK 431 (513)
T ss_pred ---------HHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhh
Confidence 77777777777776654321 1 1122222222 223333344555567778777 89999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHH-HHHHhccCC
Q 013609 371 VMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSF-VFLLFSTGE 435 (439)
Q Consensus 371 ~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 435 (439)
+.++...++.....+-......+.+.. +....|......+.+... ...+..+|.
T Consensus 432 ~~s~~~~~n~~~~~~v~~~~~~~~~~~-----------~~~~~f~~f~~~~~~~~~~fv~~~~pET 486 (513)
T KOG0254|consen 432 GASLAVAVNWLWNFLISFFFPFITEAL-----------GIGGTFGYFGGICLLSLIIFVFFFVPET 486 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cccchHHHHHHHHHHHHHHHheEEcccC
Confidence 999999999998877766666666554 234555555555555555 344444443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-33 Score=265.25 Aligned_cols=398 Identities=17% Similarity=0.203 Sum_probs=273.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHH--HhhCCCc---------cchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHH
Q 013609 14 TFISTCVCYIERVGFSIAYTAAA--DAAGVNQ---------SSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFV 82 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~~s~---------~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 82 (439)
..++.+.+++|....+...+... .+++.+. .+.++..+...++..++++++|.++||+|||+.+.++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 34556888888888877776655 2222222 236789999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCc--chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc
Q 013609 83 LWSSTCFWLKLDP--NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY 160 (439)
Q Consensus 83 ~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 160 (439)
+..+++++.++++ +|++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|..++..++..+.+.
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999994 27999999999999999999999999999999999999999999999999999998887665443
Q ss_pred c---CCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccch-----hhhhcccc-ccccccCchHHh
Q 013609 161 N---GPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQ-----KVKVDNGG-SAMKAAKIPWKR 231 (439)
Q Consensus 161 ~---~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~ 231 (439)
. +||..+.+.++++++..+.. .+.||+|++...+.+.+++.+........ +.++..++ ++.++.+..+++
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRD 243 (451)
T ss_pred cccccccccccccccccccccccc-cccccccceecccccccccccccccccccccccccccccccccccccccceeeee
Confidence 3 49999999998887655544 57799999987776666554332221110 00111110 111111134566
Q ss_pred hhcchh----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccc
Q 013609 232 IVVNLP----VWAIVVNNF-TFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILS 306 (439)
Q Consensus 232 ~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 306 (439)
+++++. +...+.... ....+.+....+.|.++++ .+.+.. -.......+...++.++...+.||+|||+
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~--- 317 (451)
T PF00083_consen 244 LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRK--- 317 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccc--ccccccccccccccccccccccccccccc---
Confidence 666643 222222222 2233334455666666655 566665 22334455667777778889999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhc--c---cCC----hhHHHHHHHHH-HHhhhcccccccccccccCC-ChhhHHHHHH
Q 013609 307 VTRTRKFLNTVGFMVASIALMALP--I---FRS----SNGAIFCSSIA-LGFLALGRAGFAVNHMDIAP-RYAGIVMGIS 375 (439)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~ 375 (439)
+...+..++.++...+. . .++ ....+....+. ..+.....+....+..|..| +.|+++.|+.
T Consensus 318 -------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~ 390 (451)
T PF00083_consen 318 -------LLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLS 390 (451)
T ss_pred -------ccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence 77777776666665553 1 112 11122222222 22222333445566677777 7999999999
Q ss_pred HHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCc
Q 013609 376 NTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 376 ~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
...+++++.+++.+...+.+.. +....+.+.+++++++.+...++.+|.|
T Consensus 391 ~~~~~i~~~i~~~~~~~~~~~~-----------~~~~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 391 YAVGRIGGFIIPFLFPYLFNNL-----------GGWGVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred cccccccccccccccccccccc-----------cccccchhhHHHHHHHHhheeEEEeeCC
Confidence 9999999999999998888876 3345566666666666655555555443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=217.58 Aligned_cols=413 Identities=14% Similarity=0.092 Sum_probs=294.1
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhC--------CCccchhhhhhhhhhhhhhhcccccccccccCchH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAG--------VNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRK 75 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~ 75 (439)
.+++...+.+...+.+.+.+|...++.+.|.+...+. .++.-.+.+..+..+|..++|+++|++.||+|||+
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~ 115 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK 115 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 4566677888889999999999999999998876652 23445688888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCcc------hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHH
Q 013609 76 VLLFSFVLWSSTCFWLKLDPN------NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAM 149 (439)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 149 (439)
++...++++.+++++++++.. -+..+...|++.|+|.|+.+|.+.+..+|...+++||...+...+..++|...
T Consensus 116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence 999999999999998887621 36788999999999999999999999999999999999999999988888888
Q ss_pred Hhhhhhhhhc----c-----------cCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCc-ccccC-ccCcccchh
Q 013609 150 GMLFLPSLVK----Y-----------NGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASA-AGFGE-SLLPMRDQK 212 (439)
Q Consensus 150 g~~~~~~l~~----~-----------~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 212 (439)
|.+++-.+.. . .=||..+.+.+++++.+....+ ..||+++......++ +.+.+ .......+.
T Consensus 196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl-~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~ 274 (538)
T KOG0252|consen 196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRL-KMPETARYTALVSKKLKQAAGDMKKVLSVDI 274 (538)
T ss_pred ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhHHHHhhcCHhhhhhcccccccccc
Confidence 8777655432 1 1299999888888777655544 557877655211111 11100 000000000
Q ss_pred hhhcccccc---ccccCchHHhhhc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccch--------hh
Q 013609 213 VKVDNGGSA---MKAAKIPWKRIVV---NLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGS--------SK 278 (439)
Q Consensus 213 ~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~ 278 (439)
..++..+.. .++....+.+.+. -+.+...+..+|+.-.+++....+....+++ .|+.+.+.-+ ..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~ 353 (538)
T KOG0252|consen 275 EAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGN 353 (538)
T ss_pred chhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHH
Confidence 000000111 1111111222222 2566677888899999999999999999887 6776655443 11
Q ss_pred h-hhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCCh----hHHHHHHHHHHHhhhccc
Q 013609 279 M-MPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSS----NGAIFCSSIALGFLALGR 353 (439)
Q Consensus 279 ~-~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 353 (439)
. +...+.++|..+...++|++||++ ....+++++.+..+.+....+. ....++..+...+..+.+
T Consensus 354 ~iia~~~~vPGyw~tv~~id~iGRk~----------iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP 423 (538)
T KOG0252|consen 354 LIIAVCSTVPGYWFTVYFIDIIGRKY----------IQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP 423 (538)
T ss_pred HHHHHHccCCceeEEEEEeehhhhHH----------HHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC
Confidence 1 112223335556667899999999 8888999998888887765442 222333333344444444
Q ss_pred c-cccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 354 A-GFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 354 ~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
. ....+..|.+| +.|++..|+....+..|++++...+.++.++. .+...+.+.++++.+++++++.+..+++
T Consensus 424 n~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~------yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 424 NATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN------YPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred CceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc------CCccccchHHHHHHHHHHHHhHheeEEe
Confidence 3 34566777777 79999999999999999999999999999843 1122489999999999999999998888
Q ss_pred ccC
Q 013609 432 STG 434 (439)
Q Consensus 432 ~~~ 434 (439)
++.
T Consensus 498 pEt 500 (538)
T KOG0252|consen 498 PET 500 (538)
T ss_pred ecc
Confidence 743
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-27 Score=221.50 Aligned_cols=422 Identities=11% Similarity=0.032 Sum_probs=291.3
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVL 83 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 83 (439)
..+||..+........+.+ ..+.++...|.+.+++|+|..|.+++.++. ......+++.|++.||+|||+++.++.++
T Consensus 23 e~~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll 100 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTV 100 (591)
T ss_pred ccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3567766665555544444 345677888999999999999999998874 34456777899999999999999999999
Q ss_pred HHHHHhhhcCC------cchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHH-Hhhhhhh
Q 013609 84 WSSTCFWLKLD------PNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAM-GMLFLPS 156 (439)
Q Consensus 84 ~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~ 156 (439)
++++.++++++ + +++.+.+.|+++|+|.+...+.....+.+|+| ++||++.|+...+.++|..+ +++..++
T Consensus 101 ~~iG~ll~ala~~~~i~~-s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 101 FCLGTLLFALTFQEVIEG-SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHHhcccccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 4 89999999999999999999999999999996 78999999999999999986 4444444
Q ss_pred hhcccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCC--CC--CCccccc----------Ccc-----------------
Q 013609 157 LVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEH--PK--ASAAGFG----------ESL----------------- 205 (439)
Q Consensus 157 l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~----------~~~----------------- 205 (439)
+. .+|+..|++.+++.++..++...+.+++|.... ++ .++++.. ++.
T Consensus 179 ~~--~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~ 256 (591)
T PTZ00207 179 FS--DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILI 256 (591)
T ss_pred HH--HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHH
Confidence 43 478999999999988877777777666553221 11 1111110 000
Q ss_pred ---------------------------------------------------Cccc-chhhhh-----cccc--------c
Q 013609 206 ---------------------------------------------------LPMR-DQKVKV-----DNGG--------S 220 (439)
Q Consensus 206 ---------------------------------------------------~~~~-~~~~~~-----~~~~--------~ 220 (439)
.++. +....+ ...+ +
T Consensus 257 ~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (591)
T PTZ00207 257 VFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVD 336 (591)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccccccccccc
Confidence 0000 000000 0000 0
Q ss_pred -cccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc--cchhhhhhHHHHHHHHHHHHHHHH
Q 013609 221 -AMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQE--MGSSKMMPYLNMFIFSNIGGVVAD 297 (439)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d 297 (439)
..++..+++++.+++..+|.+....++.......+...+.+..+..-|.+.++ ...+.++.++.+.+|++..|.+.
T Consensus 337 ~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~- 415 (591)
T PTZ00207 337 YIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE- 415 (591)
T ss_pred CCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-
Confidence 00111236778888999999999999999998899999999988832763333 33378899999999999999988
Q ss_pred HhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHH
Q 013609 298 HLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNT 377 (439)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 377 (439)
.+-+|+...+...|...+.+..+ +.++.+++...-+.....+..++...+.+...+.......|++.++-|+-.-+...
T Consensus 416 ~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~ 494 (591)
T PTZ00207 416 IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFL 494 (591)
T ss_pred HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhH
Confidence 33333321122334445555555 44444444443221334444444444445556667777777777888888888887
Q ss_pred HhhhhHHHH-HHHHHHhhccccccccCC--CCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 378 AGTLAGIVG-VDMTGKLLEAAKTTYSDL--SSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 378 ~~~~g~~i~-~~~~g~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
..-+|..+- -.++|.++|....++.+. .++.=++.+|++++++++.+.+....+.-
T Consensus 495 a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~ 553 (591)
T PTZ00207 495 GSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHL 553 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheee
Confidence 777777665 568888998765332211 13445889999999999999888766543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=227.78 Aligned_cols=341 Identities=13% Similarity=0.111 Sum_probs=248.1
Q ss_pred HHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccc
Q 013609 36 ADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFI 115 (439)
Q Consensus 36 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 115 (439)
.+.++.+.....+..+++.+|..+|++++|+++||+|||++++.++++..++.++.++++ |++.+++.|+++|++.+..
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~-~~~~~~~~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP-NYWMFLIFRFLSGFFGSGP 188 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhccch
Confidence 345566778889999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred hhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCC
Q 013609 116 FPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPK 195 (439)
Q Consensus 116 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (439)
......++.|++++++|+.+..+ ......+..++++.++++.. +||+.+++..+++.+..++ +++.||+|++...+
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSK 264 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHc
Confidence 99999999999999999999999 77777888888888888877 8999999999998876666 55777999998776
Q ss_pred CCcccccCccCccc---------chhhhhc----cccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013609 196 ASAAGFGESLLPMR---------DQKVKVD----NGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTY 262 (439)
Q Consensus 196 ~~~~~~~~~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (439)
.+.+++.+...+.. .....+. .......++...+.++++.|++....+...+..........-++..
T Consensus 265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~ 344 (521)
T KOG0255|consen 265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLN 344 (521)
T ss_pred CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhh
Confidence 66655442211110 0000000 0011111222446788888765554444444433322222222222
Q ss_pred HHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChh---HHH
Q 013609 263 FELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSN---GAI 339 (439)
Q Consensus 263 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 339 (439)
... +|.+. .......+.....+....+...|+.|||. ....+..+..++++...+..... ...
T Consensus 345 ~~~-lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (521)
T KOG0255|consen 345 VSG-LGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRRP----------PLFLSLFLAGIGLLLFGWLPDDLGGWLHW 410 (521)
T ss_pred hhh-cCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHH----------HHHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 222 33332 23334444567777777788999998888 88888888888888777765433 244
Q ss_pred HHHHHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhc
Q 013609 340 FCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395 (439)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 395 (439)
....++.+...........+..|..| ..|..+.+..+....++++++|.+.-....
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 411 ILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555444455677777777 689999999999999999999988765544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=206.55 Aligned_cols=354 Identities=13% Similarity=0.037 Sum_probs=245.0
Q ss_pred hhhhhHHHHHHHHHhhCCCccc-hhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 013609 24 ERVGFSIAYTAAADAAGVNQSS-KGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILV 102 (439)
Q Consensus 24 ~~~~~~~~~~~i~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (439)
-+...+.+.|.+.+|+|+|++| .|.+.+++..+|++.+++.|.++||+|.|+++.++.+.+++.+++.++++ ++..+.
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-Sl~~L~ 119 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-SVWHMQ 119 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4677888999999999999999 99999999999999999999999999999999999999999999999996 999999
Q ss_pred HHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhH--HHHHHHHH
Q 013609 103 VARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAA--LGGMWSLL 180 (439)
Q Consensus 103 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~--~~~~~~~~ 180 (439)
+.|++.|++.|... +...++.+|+|+++|+++.++..++..+|.++++++++. ...+|||+-+.+.-+ .+....++
T Consensus 120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~ 197 (511)
T TIGR00806 120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVF 197 (511)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999998 999999999999999999999999999999999999999 556899976554422 22334445
Q ss_pred HhhhccCCCCCCC--CCCCcccccCccCcccchh-hhhccc-c-----ccccccCchHHhhhcchhHHHHHHHHHHHHHH
Q 013609 181 WFKYATDPPRSEH--PKASAAGFGESLLPMRDQK-VKVDNG-G-----SAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYA 251 (439)
Q Consensus 181 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (439)
+.+++|..++..- ++.+.++....+.+..... .....+ . ...+....++++..+||.+..-.+-..+...+
T Consensus 198 ~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g 277 (511)
T TIGR00806 198 LALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAG 277 (511)
T ss_pred HHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhH
Confidence 5556665444321 1110000000000000000 000000 0 00011223445667888887777777777777
Q ss_pred HHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 013609 252 LYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPI 331 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
++.+.+|.-..-++..+-++.-.|..-++..+.+.+..+..|++-.+..+- ....+.+..++.+..++++..
T Consensus 278 ~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~--------~~l~l~v~s~~~~gll~~m~~ 349 (511)
T TIGR00806 278 YYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW--------SKLLIAVVSAIQAGLVFWMSQ 349 (511)
T ss_pred HHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh--------HHHHHHHHHHHHHHHhhhhhc
Confidence 777777776666554332222445556666677777777788774433211 123555666666777778888
Q ss_pred cCChhHHHHHHHHHHHhhhcccccc-cccccccCCChhhHHHHHHHHHhhhhHHHHHH
Q 013609 332 FRSSNGAIFCSSIALGFLALGRAGF-AVNHMDIAPRYAGIVMGISNTAGTLAGIVGVD 388 (439)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~ 388 (439)
.++.+......++......+..+.. .-+..++..+..|...|+++.+.-+-..+-..
T Consensus 350 t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~ 407 (511)
T TIGR00806 350 SHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITA 407 (511)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEE
Confidence 8888777766665555544443333 33444455567799999888876665555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-25 Score=201.31 Aligned_cols=380 Identities=14% Similarity=0.145 Sum_probs=276.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccC-chHHHHHHHHHHHHHHhhhc
Q 013609 14 TFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIG-GRKVLLFSFVLWSSTCFWLK 92 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~ 92 (439)
+...+++.+.....+.|.++.+.++.|.|.+|+|.+.+...+...++++++|.++||++ +||.+.++.++.++......
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777888889999999999999999999999999999999999999999985 67788888887777777777
Q ss_pred CCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhh-hhhhhcccCC---chhHH
Q 013609 93 LDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLF-LPSLVKYNGP---NSVFN 168 (439)
Q Consensus 93 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~-~~~l~~~~~w---r~~f~ 168 (439)
..+ +++.+++.-.+..+......|...++.-+..+ ++++-.|-...+.++|..++... ++.+....++ ...++
T Consensus 87 ~~~-~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
T PF03825_consen 87 FSS-SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY 163 (400)
T ss_pred Hhc-cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 775 89988888888888888888999999888874 56777888888888998887554 2333333332 34566
Q ss_pred HHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHH
Q 013609 169 AEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTF 248 (439)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (439)
+.+...++..... +.+|+.|++++.+. +.++....+..+++|+|++....+..++.
T Consensus 164 i~~~~~~ll~~~~-l~lp~~~~~~~~~~-----------------------~~~~~~~~~~~~llk~~~~~~Fll~~~l~ 219 (400)
T PF03825_consen 164 IAAILSLLLAGFA-LFLPKTPPKRSAKE-----------------------SVKKLLGLDALKLLKNPRFLVFLLAAFLI 219 (400)
T ss_pred HHHHHHHHHHHHH-HhCCCCccccccCC-----------------------CcccccchHHHHHhcCccHHHHHHHHHHH
Confidence 6555554443333 34566553221111 11122223345899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhh
Q 013609 249 HYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMA 328 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (439)
..+...+..+.+.|+++.-|.+....+.+.++..+..++.-...+++.+|++.++ ++.++.+..++=..+
T Consensus 220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~----------ll~~a~~~~~vR~~l 289 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW----------LLLLALVAYAVRWLL 289 (400)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH----------HHHHHHHHHHHHHHH
Confidence 9999999999999999943377778888888888899999999999999999998 889999999888888
Q ss_pred hccc-CChhHHHHHHHH-----HHHhhhcccccccccccccCCChhhHHHHHHHHH-hhhhHHHHHHHHHHhhccccccc
Q 013609 329 LPIF-RSSNGAIFCSSI-----ALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTA-GTLAGIVGVDMTGKLLEAAKTTY 401 (439)
Q Consensus 329 ~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~g~~i~~~~~g~l~~~~~~~~ 401 (439)
+... ++.+.......+ +..++...........+..|++.|+++.++++.. ..+|..+|..+.|++.|+.+.++
T Consensus 290 ~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~ 369 (400)
T PF03825_consen 290 YAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG 369 (400)
T ss_pred HHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence 7776 333333333222 3333333333333444456668999999998876 56899999999999999883221
Q ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 402 SDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
.-.|...+.+.+++.++..++..++.|++
T Consensus 370 -----~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 370 -----MFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 11344566666666666666666555554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=199.28 Aligned_cols=389 Identities=13% Similarity=0.082 Sum_probs=265.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhccccccccc----ccCchHHHHHH-HHHHHHH
Q 013609 13 LTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQ----KIGGRKVLLFS-FVLWSST 87 (439)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~ 87 (439)
.++...+...+......+..+.+.+++|.+..+.+++..+..+...+.+|+.|+++| |+||||.++++ .....++
T Consensus 8 ~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~ 87 (477)
T TIGR01301 8 RVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFA 87 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHH
Confidence 334444445566677777788888999999999999999999999999999999999 59999998875 6666667
Q ss_pred HhhhcCCcchHH-----------------HHHHHHHHHhhhcccchhhHHHHhhhccCCccc--chhhHHHhhhhhHHHH
Q 013609 88 CFWLKLDPNNVF-----------------ILVVARLLVGVSQGFIFPSIHTVLAQWVPPHER--SRSVSLTTSGMYLGAA 148 (439)
Q Consensus 88 ~~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~ 148 (439)
..+.++++ +.+ .++++-.+..++.....+...++++|..|+++| +.+.++.+...++|..
T Consensus 88 l~ll~~~~-~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i 166 (477)
T TIGR01301 88 VILIGFAA-DIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNV 166 (477)
T ss_pred HHHHHhCc-hhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 67777775 542 223333344457777888899999999998865 5799999999999999
Q ss_pred HHhhhhhhh--hccc-------------CCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhh
Q 013609 149 MGMLFLPSL--VKYN-------------GPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKV 213 (439)
Q Consensus 149 ~g~~~~~~l--~~~~-------------~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (439)
+|+.+++.. .+.+ +.|..|++.++..++..++..+..||.|...+++.++++..+
T Consensus 167 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~---------- 236 (477)
T TIGR01301 167 LGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAP---------- 236 (477)
T ss_pred HHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhccc----------
Confidence 999998865 2211 568899998888888777777777886643211110000000
Q ss_pred hhccccccccccCchHHhhhcc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCccccc---------c-hh
Q 013609 214 KVDNGGSAMKAAKIPWKRIVVN-----LPVWAIVVNNFTFHYALYVLMNWLPTYFE-LGLQLSLQEM---------G-SS 277 (439)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~---------~-~~ 277 (439)
.++.+....+++++++ |.++.+++..++.+++++.+..|.+.|+. +.++-++.+. | +-
T Consensus 237 ------~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~ 310 (477)
T TIGR01301 237 ------PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFG 310 (477)
T ss_pred ------ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHH
Confidence 0000111223333332 67899999999999999999999999886 4555433211 1 22
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCC----------------------h
Q 013609 278 KMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRS----------------------S 335 (439)
Q Consensus 278 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~ 335 (439)
.....+...+.+++..++.+|+++|+ .....+.++.++++....+..+ .
T Consensus 311 l~~~s~~~~i~s~~l~~l~~~~g~~k---------~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (477)
T TIGR01301 311 LMLNSVVLGITSIGMEKLCRGWGAGK---------RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKA 381 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHH
Confidence 33445555566777788888887533 1556666666666555543221 1
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccCC--ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhH
Q 013609 336 NGAIFCSSIALGFLALGRAGFAVNHMDIAP--RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAV 413 (439)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 413 (439)
........+++.........+.....+.++ +..|..+|+.|.+..+.+.+.....|.+.+..+ ++...+
T Consensus 382 ~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g---------~~~~~~ 452 (477)
T TIGR01301 382 SALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG---------GGNLPA 452 (477)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC---------CCCeeH
Confidence 122233334444444444445555555664 467999999999999999999999998666653 245667
Q ss_pred HHHHHHHHHHHHHHHHHhccCCc
Q 013609 414 FFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
+.+.++..+++.+..+++.++.+
T Consensus 453 ~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 453 FVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 88888888888877776655543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=205.10 Aligned_cols=410 Identities=14% Similarity=0.135 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccc-cCchHHHHHHHHHHHHHH
Q 013609 11 VILTFISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQK-IGGRKVLLFSFVLWSSTC 88 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~ 88 (439)
+..++...+...+..+.....++. +.+++|.++.+.+++.+.+........+++|+++|| +|||+++..+.++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~ 102 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY 102 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 445566666666666666666655 568899999999998888877766667899999999 599999999999999999
Q ss_pred hhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcc--cchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchh
Q 013609 89 FWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHE--RSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSV 166 (439)
Q Consensus 89 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~ 166 (439)
.++++++++.+.+.+.|.++|+|.|...+...+++.|++|+++ |.+++++++.+.++|..+||.+++++.++.|||+.
T Consensus 103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~ 182 (500)
T PRK09584 103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVA 182 (500)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 9998875356778889999999999999999999999998653 45688999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHH---HHhhhccCCCCCCC-CCCCcccccCccCc-----ccchhhhhcccccc--------------cc
Q 013609 167 FNAEAALGGMWSL---LWFKYATDPPRSEH-PKASAAGFGESLLP-----MRDQKVKVDNGGSA--------------MK 223 (439)
Q Consensus 167 f~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--------------~~ 223 (439)
|++.++...+..+ ......+|.+++.+ ++.|..+....... ..........+..+ .+
T Consensus 183 F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (500)
T PRK09584 183 FALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGK 262 (500)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 9998754444322 22223333221111 11111100000000 00000000000000 00
Q ss_pred ccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhCCccc------ccchhhhhhHHHHHHHHHHHHHH
Q 013609 224 AAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFEL--GLQLSLQ------EMGSSKMMPYLNMFIFSNIGGVV 295 (439)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~------~~~~~~~~~~~~~~~~~~~~g~l 295 (439)
.. ...++.-| ++.+..+. .+.....++......|.++.. ..+.+.. ..+.+.+...+..++..++..++
T Consensus 263 ~~-~~~~~~~~-~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~ 339 (500)
T PRK09584 263 EA-FAMKGAAR-RKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAI 339 (500)
T ss_pred HH-hhcCHHHH-HHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHH
Confidence 00 00011112 22222222 234444555566666666543 1122211 23455566776777777777666
Q ss_pred HHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCC---------h-hHHHHHHHHHHHhhhcccccccccccccCC
Q 013609 296 ADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRS---------S-NGAIFCSSIALGFLALGRAGFAVNHMDIAP 365 (439)
Q Consensus 296 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (439)
-+|.++|.. ......+++++.+++++.+..... . +......+.+.+-....+..........|+
T Consensus 340 ~~~l~~r~~------~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~ 413 (500)
T PRK09584 340 YNKMGDRLP------MPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ 413 (500)
T ss_pred HHHhCcCCC------cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH
Confidence 666665531 223567777777777766544322 2 233333444444444444445555556667
Q ss_pred ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 013609 366 RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLL 430 (439)
Q Consensus 366 ~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (439)
+.||+++|+......+|..++..+.+....... ..++....+++...|...++..++..++.+.
T Consensus 414 ~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 414 RLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN-VTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999997666555555555444432211000 0000001124778888777766544443333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=194.27 Aligned_cols=383 Identities=14% Similarity=0.103 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHh-hCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH--HHH
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAAADA-AGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW--SST 87 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~--~~~ 87 (439)
.....+.++..++.....-|..|...++ .|+|.+|+|.+.++..+...+.+|+.|.++||.|.||-++....+. ..+
T Consensus 9 ~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~ 88 (412)
T PF01306_consen 9 YWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFG 88 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 3445556666777778888888887765 8999999999999999999999999999999999776554433222 222
Q ss_pred Hhh-hcCCc---chH-HHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC
Q 013609 88 CFW-LKLDP---NNV-FILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG 162 (439)
Q Consensus 88 ~~~-~~~~~---~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 162 (439)
... ..+.| .|. ...+++-...|+......|+.-+++.++. ++.+.-.|-..++.++|.+++..++|.+.+ .+
T Consensus 89 pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~ 165 (412)
T PF01306_consen 89 PFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-IN 165 (412)
T ss_dssp HHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eC
Confidence 222 12221 122 22333334445555566677777776664 556777888899999999999999999987 45
Q ss_pred CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHH
Q 013609 163 PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (439)
-+..||+....+++..++.++..|+.+++.+..+..++ ++++...++..+++|+|++|.+.
T Consensus 166 p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~k~~~fw~~~ 226 (412)
T PF01306_consen 166 PNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGA-------------------KKDKVSLKDVLSLFKMRNFWFFV 226 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS-------------------------HHHHHHHTTSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccccc-------------------CCCCCcHHHHHHHhcchhHHHHH
Confidence 67788887766666555555555554443221111000 11122234457889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---CCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHH
Q 013609 243 VNNFTFHYALYVLMNWLPTYFELGL---QLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGF 319 (439)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 319 (439)
+........+..+....|.|++..+ +.+....|++.+...+..++...+.+++.+|+|.|+ .+.++.
T Consensus 227 l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~----------~Lllag 296 (412)
T PF01306_consen 227 LFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN----------LLLLAG 296 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh----------HHHHHH
Confidence 8888888888888888999987633 233455788888889999999999999999999999 888888
Q ss_pred HHHHHHHhhhcccCChhHHHHHHHHHHHhh-hcccccccccccccCCChhhHHHHHH-HHHhhhhHHHHHHHHHHhhccc
Q 013609 320 MVASIALMALPIFRSSNGAIFCSSIALGFL-ALGRAGFAVNHMDIAPRYAGIVMGIS-NTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
.+..+=..+.++.++++.....=.+-..-. ....+..--.....+++..++...+. +...+++..+.+.+.|.++|+.
T Consensus 297 ~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~ 376 (412)
T PF01306_consen 297 VIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI 376 (412)
T ss_dssp HHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc
Confidence 888888888888888776555544433322 23333333344445567788888885 6888999999999999999999
Q ss_pred cccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCc
Q 013609 398 KTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
|++.+|++++.+.+...++..+..+++|
T Consensus 377 -----------G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 377 -----------GFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred -----------CcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 8999999998888777666666554443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=182.59 Aligned_cols=386 Identities=13% Similarity=0.157 Sum_probs=268.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccc-cCchHHHHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQK-IGGRKVLLFSFVLW 84 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~ 84 (439)
+|...+..+|+..|-+++.....+....+...|.+++.++..++.+.|+....+...++|++.|| +|-|.--++-++..
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv 120 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV 120 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence 56677777888888888888888898999999999999999999999999999999999999997 58777666666666
Q ss_pred HHHHhhhcCC--cchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC
Q 013609 85 SSTCFWLKLD--PNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG 162 (439)
Q Consensus 85 ~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 162 (439)
.+|.++.+.. .|.+|.++.+|++.|+|.-....+-+++..-|+..||.+.++|+......+|..+--.+.+++.+..+
T Consensus 121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 6676655432 14899999999999999888888999999999999999999999999999999888878777776432
Q ss_pred C------c---hhHHHHhHHHHHHHHHHhh---hccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHH
Q 013609 163 P------N---SVFNAEAALGGMWSLLWFK---YATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWK 230 (439)
Q Consensus 163 w------r---~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (439)
= + ...+......+...+.... +.++..++. .+.++. ...+.++. .
T Consensus 201 ~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAeri-lh~e~g--------------------~~Ge~pkL--t 257 (459)
T KOG4686|consen 201 RMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERI-LHLEEG--------------------FLGEEPKL--T 257 (459)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HhhhcC--------------------cccCCccc--c
Confidence 0 1 1112222222222221111 111111110 000000 00000110 1
Q ss_pred hhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhh
Q 013609 231 RIV-VNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTR 309 (439)
Q Consensus 231 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 309 (439)
+.. -.|.+|.+.+..++.+.+.+.+...-|.++++++|+|+.+++.+.+.....+.+.+++.|.++||+|++-
T Consensus 258 dv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~------ 331 (459)
T KOG4686|consen 258 DVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL------ 331 (459)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee------
Confidence 111 2478999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHH
Q 013609 310 TRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDM 389 (439)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~ 389 (439)
+....+.+....+-..+.++ .........+++.............+...+|.++.|++.|.++.+.++|-++.|.+
T Consensus 332 ---~wv~~a~~~tl~~H~~l~Ft-~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Ii 407 (459)
T KOG4686|consen 332 ---WWVASACILTLLGHSGLFFT-FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPII 407 (459)
T ss_pred ---hhHHHHHHHHHHHhhhHHhh-hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhh
Confidence 23333333333333333322 11122223333333333322223333344555789999999999999999999999
Q ss_pred HHHhhccccccccCCCCcccchh---HHHHHHHHHHHHHHHHHHhccC
Q 013609 390 TGKLLEAAKTTYSDLSSPESWRA---VFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 390 ~g~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
.|.+.|.. ++|.+ -|+..+.+.+.+..+.+.+.|+
T Consensus 408 ag~i~d~~----------g~y~~le~ffl~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 408 AGFIADGD----------GSYDNLEAFFLIIGLMALTSVGILFYLNKK 445 (459)
T ss_pred hheeecCC----------CchhhHHHHHHHHHHHHHHHHHHHhheecc
Confidence 99999987 34444 3444555555555555555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-23 Score=192.89 Aligned_cols=336 Identities=16% Similarity=0.185 Sum_probs=256.8
Q ss_pred HHHHHHHHhhCCCccchhhhhhhhhhhhhhhccccccccc----ccCchHHHH-HHHHHHHHHHhhhcCC-cc------h
Q 013609 30 IAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQ----KIGGRKVLL-FSFVLWSSTCFWLKLD-PN------N 97 (439)
Q Consensus 30 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~-~~------~ 97 (439)
...+.+.+.+|+++...|.+..+..+..++..|+.|.++| |+||||..+ ++.+..+++..++... |. .
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 4455567778999999999999999999999999999999 899777655 5778888877777765 31 2
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHHhhhccC-CcccchhhHHHhhhhhHHHHHHhhhhhhhhccc-------CCchhHHH
Q 013609 98 VFILVVARLLVGVSQGFIFPSIHTVLAQWVP-PHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN-------GPNSVFNA 169 (439)
Q Consensus 98 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------~wr~~f~~ 169 (439)
...+.+.-++..++.........++..|..+ ++||.+..+.-..+..+|..+...+.+.+.+.. +|++..++
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 3345677777799999999999999999997 578999999999998898876666666655422 69999999
Q ss_pred HhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHH
Q 013609 170 EAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFH 249 (439)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (439)
.+++.++..++..+..+|++++.+++ +++.+.++.+++++|||.++...+..++..
T Consensus 183 ~~iv~~v~~~i~~~~~ke~~~~~~~~------------------------~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~ 238 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKERSVEVTEQ------------------------EKKISLRDSLRSLFRNRPFRILLLAFFLQW 238 (428)
T ss_pred HHHHHHHHhhhhhheeeecccccccc------------------------ccccccccchhhhcccchHHHHHHHHHHHH
Confidence 99988888888777777722221110 222345566789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhh
Q 013609 250 YALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMAL 329 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
.+........+.|.++..|.+ ...+.+.....+..+++.++.++++||+|+|+ ....+..+.+++.+.+
T Consensus 239 ~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~----------~~~~~~~~~~~~~~~~ 307 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK----------VYIIGLLLAALGFLLL 307 (428)
T ss_pred hhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee----------ehhhhHHHHHHHHHHH
Confidence 999988889999999988877 45667777888899999999999999999999 8888888888777776
Q ss_pred cccC--ChhHHHHHHHHHHHhhhcccccccccccccCC--------ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccc
Q 013609 330 PIFR--SSNGAIFCSSIALGFLALGRAGFAVNHMDIAP--------RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKT 399 (439)
Q Consensus 330 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~ 399 (439)
.+.+ +.+.......+.....+...........|+.+ ++.|..+|+.+....++..+++.+.+.+.+..+-
T Consensus 308 ~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 308 FFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 6654 44444433333333333333444444444332 3469999999999999999999999999887654
Q ss_pred c
Q 013609 400 T 400 (439)
Q Consensus 400 ~ 400 (439)
.
T Consensus 388 ~ 388 (428)
T PF13347_consen 388 D 388 (428)
T ss_pred C
Confidence 3
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=198.28 Aligned_cols=369 Identities=11% Similarity=-0.032 Sum_probs=244.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccC-----chHHHHHHHHH
Q 013609 9 LIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIG-----GRKVLLFSFVL 83 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~ 83 (439)
....++...++..++.........|.+.+++|+|+++++...+...+...+-.+ +|+++||++ ||+.++++.++
T Consensus 26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 344555666778887744444555667778999999999999999999999655 999999998 78888888777
Q ss_pred H-HHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhh---HHHhhhhhHHHHHHhhhhhhhhc
Q 013609 84 W-SSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSV---SLTTSGMYLGAAMGMLFLPSLVK 159 (439)
Q Consensus 84 ~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~g~~~g~~~~~~l~~ 159 (439)
. .+.....+..+++.....+..++.+++.+...++..++..|..+ |++.... ++.....++|..+|+.+++.+.+
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 35444455555234444558899999999999999999999998 5554433 33334455899999999999999
Q ss_pred ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHH
Q 013609 160 YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVW 239 (439)
Q Consensus 160 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (439)
.++||..|++.+.+.++..+. ..+.+|++....++.++++.. .. ..... ......++.....++.+++|.++
T Consensus 184 ~~~~~~~f~~~a~l~ll~~~~-~~~~~E~~~~~~~~~~~~~~~-~~-~~~~~-----~~~~~~~~~~~~l~~~l~~~~i~ 255 (468)
T TIGR00788 184 KTLTRILFLITAALLLLQLFV-SNLSKERRAFVRPRIGTYLEM-NM-ALLTL-----GVLANVKVQILGLRGAIQLLEIA 255 (468)
T ss_pred hcCcchHHHHHHHHHHHHHHH-HHhcccccccccccccccchh-hh-hhhhh-----hHHHHHHHHHHHHHHHHhcHHHH
Confidence 999999999998887776433 345566532111110000000 00 00000 00000111122345667888887
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHH
Q 013609 240 AIVVNNFT-FHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVG 318 (439)
Q Consensus 240 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 318 (439)
...+..++ .......... .-.+.++..|+++.+.|......+++.+++..+.+++.+|++.|+ .+.++
T Consensus 256 ~~l~fifl~~~~~~~~~~~-~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~----------~l~~~ 324 (468)
T TIGR00788 256 KPLIFIFLSYANLPGASGS-VFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL----------LFGVT 324 (468)
T ss_pred HHHHHHHHHHhhcCCCCce-eEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH----------HHHHH
Confidence 76555555 2211111111 101233458999999999999999999999999999988888887 77777
Q ss_pred HHHHHHHHhhhccc----------CChhHHH-HHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHH
Q 013609 319 FMVASIALMALPIF----------RSSNGAI-FCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGV 387 (439)
Q Consensus 319 ~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~ 387 (439)
.++.+++.+..... ++..... ...+...+......+.........+++++|+.+++.+.+.++|..+++
T Consensus 325 ~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~ 404 (468)
T TIGR00788 325 TLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSG 404 (468)
T ss_pred HHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHH
Confidence 77777766443211 1111111 222233333344445555555667778999999999999999999999
Q ss_pred HHHHHhhcccc
Q 013609 388 DMTGKLLEAAK 398 (439)
Q Consensus 388 ~~~g~l~~~~~ 398 (439)
.+.|.+.+..+
T Consensus 405 ~~gg~l~~~~g 415 (468)
T TIGR00788 405 FLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHcC
Confidence 99999998874
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-23 Score=193.94 Aligned_cols=357 Identities=13% Similarity=0.019 Sum_probs=229.5
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhH-HHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccc----cCchHH-HH
Q 013609 5 PKRYLIVILTFISTCVCYIERVGFS-IAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQK----IGGRKV-LL 78 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-l~ 78 (439)
+..+..-+.-.++.+.........+ ...+.+.+++|+|..++|.+.++..+..++..|+.|.++|| +||||. ++
T Consensus 5 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il 84 (444)
T PRK09669 5 QLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLL 84 (444)
T ss_pred cccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHH
Confidence 3334333344444444343333333 34555778899999999999999999999999999999998 787554 55
Q ss_pred HHHHHHHHHHhhhcCCcc-----hHHHHHHHHHHHhhhcccchhhHHHHhhhcc-CCcccchhhHHHhhhhhHHHHHHhh
Q 013609 79 FSFVLWSSTCFWLKLDPN-----NVFILVVARLLVGVSQGFIFPSIHTVLAQWV-PPHERSRSVSLTTSGMYLGAAMGML 152 (439)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~ 152 (439)
.+.+..++...+....|+ ....+++...+.+.+.........++.+|+. +++||.+..++...+..+|..+++.
T Consensus 85 ~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~ 164 (444)
T PRK09669 85 WFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSV 164 (444)
T ss_pred HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 676777666655544431 2456666677777777777777889999998 4688999888888888888777766
Q ss_pred hhhhhhc-------ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhcccccccccc
Q 013609 153 FLPSLVK-------YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAA 225 (439)
Q Consensus 153 ~~~~l~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (439)
+...+.. ..+|+..+.+.++++.+..+..++..+|++++++ +++.+.
T Consensus 165 ~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~--------------------------~~~~~~ 218 (444)
T PRK09669 165 IALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEV--------------------------DNSSSV 218 (444)
T ss_pred HHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCC--------------------------cCCCCH
Confidence 5443332 3468888888887777766655555555322210 001223
Q ss_pred CchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Q 013609 226 KIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRIL 305 (439)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 305 (439)
.+++++++|||.++......++............+.|.+...+. ++..+.+.....+..+++.++.+++.||+++|+
T Consensus 219 ~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~-- 295 (444)
T PRK09669 219 WKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVR-- 295 (444)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH--
Confidence 34567889999999888877776666655555555555543332 223334445556777788889999999999888
Q ss_pred chhhhhHHHHHHHHHHHHHHHh-hhcccC-ChhHHHHH-HHHHHHhhhcccccccccccccCC--------ChhhHHHHH
Q 013609 306 SVTRTRKFLNTVGFMVASIALM-ALPIFR-SSNGAIFC-SSIALGFLALGRAGFAVNHMDIAP--------RYAGIVMGI 374 (439)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~ 374 (439)
....+.....+... .....+ +.+..... .+.+.+.. ...+.......|..+ +..|..+|.
T Consensus 296 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~ 366 (444)
T PRK09669 296 --------AFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFST 366 (444)
T ss_pred --------HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHH
Confidence 55555444433222 222222 22222222 22233333 333444444444322 345778899
Q ss_pred HHHHhhhhHHHHHHHHHHhhccccc
Q 013609 375 SNTAGTLAGIVGVDMTGKLLEAAKT 399 (439)
Q Consensus 375 ~~~~~~~g~~i~~~~~g~l~~~~~~ 399 (439)
.+.+..+|.++++.+.|.+.+..+-
T Consensus 367 ~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 367 NLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999987754
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-22 Score=186.23 Aligned_cols=358 Identities=16% Similarity=0.102 Sum_probs=263.4
Q ss_pred hhhhhhhhhhhhhhhcccccccccccCchHHHHHH-HHHHHHHHhhhcCC-cchHHHHHHHHHHHhhhcccchhhHHHHh
Q 013609 46 KGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFS-FVLWSSTCFWLKLD-PNNVFILVVARLLVGVSQGFIFPSIHTVL 123 (439)
Q Consensus 46 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~-~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 123 (439)
.++..++..+..++..|+.|.++|+-|+||.++.. ..+..+.+.+..+. +++++...+.-++.-++.+.......+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888899999999999999999877766554 44444555555553 43666666666777778888899999999
Q ss_pred hhccCCccc--------------------------chhhHHHhhhhhHHHHHHhhhhhhhhc--------ccCCchhHHH
Q 013609 124 AQWVPPHER--------------------------SRSVSLTTSGMYLGAAMGMLFLPSLVK--------YNGPNSVFNA 169 (439)
Q Consensus 124 ~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~--------~~~wr~~f~~ 169 (439)
.|..+++++ ++..+.-.....+|.++...+.-.+.. ..+-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999999888 899998888888888887776655432 1235888888
Q ss_pred HhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHH
Q 013609 170 EAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFH 249 (439)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (439)
.++.-++..+..+++.||+|+.+..+...+. ....-++....++++.|+|.....++..++..
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~-----------------~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~ 294 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSY-----------------LRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYS 294 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCcchhH-----------------HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 8888888888888888888763211110000 00111333455677778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHH-HHHHhh
Q 013609 250 YALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVA-SIALMA 328 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 328 (439)
-+...+......|.++++|++..+...+.....+.+++|+.+.+++.||+|.|. ++ .+..+.... .+....
T Consensus 295 dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~-------~~-~l~~~l~~~~~i~~~g 366 (477)
T PF11700_consen 295 DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT-------KR-TLLISLILWIIIPLYG 366 (477)
T ss_pred HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-------hH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999993 00 333333322 222222
Q ss_pred hc---c----cCChhHH-HHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccc
Q 013609 329 LP---I----FRSSNGA-IFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTT 400 (439)
Q Consensus 329 ~~---~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~ 400 (439)
+. . ..+.+.. +..++.+...+.........+.+-.||++.+..+|++.......+.+||.+.|.+.+..
T Consensus 367 ~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t--- 443 (477)
T PF11700_consen 367 LFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT--- 443 (477)
T ss_pred HHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 21 0 2233333 33333444444444444455666677788999999999999999999999999999998
Q ss_pred ccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCccC
Q 013609 401 YSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGERIF 438 (439)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (439)
++.+..+....++.+++.++...+..++..+
T Consensus 444 -------g~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~ 474 (477)
T PF11700_consen 444 -------GSQRYGFLFLLVLFLIGLILLFFVDVEKGRE 474 (477)
T ss_pred -------CCchhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 5789999999999999999888877665543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=181.37 Aligned_cols=276 Identities=12% Similarity=0.075 Sum_probs=202.4
Q ss_pred chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc---------------
Q 013609 96 NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY--------------- 160 (439)
Q Consensus 96 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------------- 160 (439)
++|+.++++-++.|.|.+...+..++++++..|+|++++.+++.+..+++|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 38999999999999999999999999999999999999999999999999999999999987731
Q ss_pred -cCCchhHHHHhHHHHHHHHHHhhh-ccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhH
Q 013609 161 -NGPNSVFNAEAALGGMWSLLWFKY-ATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPV 238 (439)
Q Consensus 161 -~~wr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (439)
.+||++|++.+.+..+..+++.+. .||.++++. + +. .+ ++. ...++.+++|.+
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~---~--~~------------------~~-~~~-~~~~~~~~~~~~ 142 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV---A--RV------------------SS-GDT-TQKTSAFQFTHL 142 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccc---c--cc------------------cc-ccc-cchhhHHhhHHH
Confidence 479999997777655544443332 222111110 0 00 00 000 111356788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHH
Q 013609 239 WAIVVNNFTFHYALYVLMNWLPTYFELG--LQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNT 316 (439)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 316 (439)
+...+..++......+...|.+.|+++. +|+++.+.+...+....+.++|+.+.+++.||+++|+ .+.
T Consensus 143 ~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~----------~l~ 212 (310)
T TIGR01272 143 VLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR----------YLA 212 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH----------HHH
Confidence 8888888888888999999999999864 6899999999999999999999999999999999888 666
Q ss_pred HHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcc
Q 013609 317 VGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEA 396 (439)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 396 (439)
.+..+..++.++....+.........+++++.....+.......++ .|++.+++.++. ....+|+++.|.+.|.+.|.
T Consensus 213 ~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~-~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~ 290 (310)
T TIGR01272 213 FNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNA-LGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADC 290 (310)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHh
Confidence 6666666665555444443333333344444444443334344444 445566777775 67889999999999999998
Q ss_pred ccccccCCCCcccchhHHHHHHH
Q 013609 397 AKTTYSDLSSPESWRAVFFIPGL 419 (439)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~ 419 (439)
. +.+.++++...
T Consensus 291 ~-----------g~~~a~~v~~~ 302 (310)
T TIGR01272 291 L-----------GIQLAFALPVP 302 (310)
T ss_pred c-----------cchHHHHHHHH
Confidence 7 67777764433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-21 Score=181.11 Aligned_cols=176 Identities=13% Similarity=0.106 Sum_probs=143.8
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHH-HHhhCCCccchhhhhhhhhhhhhhhccccccccccc-CchHHHH
Q 013609 1 MMNFPKRYLIVILTFISTCVCYIERVGFSIAYTAA-ADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKI-GGRKVLL 78 (439)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~ 78 (439)
|+++.++.+.+..++...+...+..+.+...+|.+ .+++|.++.+.+.+.+.+.....++.+++|+++||+ ||||++.
T Consensus 1 ~~~~~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~il 80 (493)
T PRK15462 1 MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM 80 (493)
T ss_pred CCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence 45666666777777777777777777777777765 567899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCc--ccchhhHHHhhhhhHHHHHHhhhhhh
Q 013609 79 FSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPH--ERSRSVSLTTSGMYLGAAMGMLFLPS 156 (439)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~ 156 (439)
++.++..++..+++...++...+.+...+.++|.|...+...++++|.+|++ +|.+++++...+.++|..++|.+.++
T Consensus 81 iG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~ 160 (493)
T PRK15462 81 LGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY 160 (493)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHH
Confidence 9999999998777654212233444444555667777788889999999875 69999999999999999999999999
Q ss_pred hhcccCCchhHHHHhHHHHH
Q 013609 157 LVKYNGPNSVFNAEAALGGM 176 (439)
Q Consensus 157 l~~~~~wr~~f~~~~~~~~~ 176 (439)
+.+..|||+.|.+.++..++
T Consensus 161 L~~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 161 AQEEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred HHhhhChHHHHHHHHHHHHH
Confidence 99989999999987654333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-22 Score=188.52 Aligned_cols=352 Identities=12% Similarity=0.051 Sum_probs=220.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHH-HHHHHhhCCCccchhhhhhhhhhhhhhhccccccccccc----CchHHH-HHHHH
Q 013609 9 LIVILTFISTCVCYIERVGFSIAY-TAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKI----GGRKVL-LFSFV 82 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~l-~~~~~ 82 (439)
...+.-.++.+..........+.+ +.+.+++|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+
T Consensus 8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 333344445555555554444433 456677899999999999999999999999999999996 777755 44544
Q ss_pred HHHHHHhhh-c----CCcc-hHHHHHHHHHHHhhhcccchhhHHHHhhhccC-CcccchhhHHHhhhhh-----HHHHHH
Q 013609 83 LWSSTCFWL-K----LDPN-NVFILVVARLLVGVSQGFIFPSIHTVLAQWVP-PHERSRSVSLTTSGMY-----LGAAMG 150 (439)
Q Consensus 83 ~~~~~~~~~-~----~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~-----~g~~~g 150 (439)
...+...+. . +.+. .....++.-.+.+++.+...+...++..|..+ +++|.+..++-..+.+ ++..++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~ 167 (448)
T PRK09848 88 PLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIG 167 (448)
T ss_pred HHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333332 1 2210 23334455567788888888777787777665 4678887666554433 455556
Q ss_pred hhhhhhhhccc--CCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCch
Q 013609 151 MLFLPSLVKYN--GPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIP 228 (439)
Q Consensus 151 ~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (439)
|.+.+...+.. +|.....+.++++.+..+......||+++++. ++++..+.
T Consensus 168 p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~---------------------------~~~~~~~~ 220 (448)
T PRK09848 168 PSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIV---------------------------AQPSLKIS 220 (448)
T ss_pred HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCc---------------------------cCCCHHHH
Confidence 65554432111 12111122233333333333333344322110 01122345
Q ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchh
Q 013609 229 WKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVT 308 (439)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 308 (439)
+++++|||.++...+..++............|.|+++.+|.++...+.......++.+++.++.+++.||+++|+
T Consensus 221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~----- 295 (448)
T PRK09848 221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN----- 295 (448)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----
Confidence 678999999999988888888888888888888988888877665555444445677888999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcccC--ChhHHHH-HHHHHHHhhhcccccccccccccCC--------ChhhHHHHHHHH
Q 013609 309 RTRKFLNTVGFMVASIALMALPIFR--SSNGAIF-CSSIALGFLALGRAGFAVNHMDIAP--------RYAGIVMGISNT 377 (439)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~ 377 (439)
....+.++..++...+.+.+ +.+.... ..+.+.+..... +.......+..+ +++|..+|+.+.
T Consensus 296 -----~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~ 369 (448)
T PRK09848 296 -----TFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSF 369 (448)
T ss_pred -----HHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHH
Confidence 77777777666665555433 2222222 222233333322 223333333322 246999999999
Q ss_pred HhhhhHHHHHHHHHHhhcccc
Q 013609 378 AGTLAGIVGVDMTGKLLEAAK 398 (439)
Q Consensus 378 ~~~~g~~i~~~~~g~l~~~~~ 398 (439)
...+|..+++.+.+.+.+..+
T Consensus 370 ~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 370 TRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999987654
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-22 Score=175.32 Aligned_cols=393 Identities=17% Similarity=0.159 Sum_probs=287.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHH
Q 013609 2 MNFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSF 81 (439)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 81 (439)
|..++||.+++..++..+.+.+++..++++.......|+ +.+..-|..-+|++.+....+++-|+.||+|-|...+++.
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 345789999999999999999999999999999999999 7777889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCc-----chHH--HHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhh
Q 013609 82 VLWSSTCFWLKLDP-----NNVF--ILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFL 154 (439)
Q Consensus 82 ~~~~~~~~~~~~~~-----~~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 154 (439)
.+..+|..+-..+. +.++ ....+..+.+.++-........+..-|+|++||..+..+-.++..+|.++|.++.
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 99999998776653 2455 7779999999998888888788899999999999999999999999999999988
Q ss_pred hhhhccc------CCch--hHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccC
Q 013609 155 PSLVKYN------GPNS--VFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAK 226 (439)
Q Consensus 155 ~~l~~~~------~wr~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (439)
..+..+- .|.. .|+....++.+.+++..+..+++|+.+....+.. ..+.+..
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~--------------------~~~~~f~ 256 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAA--------------------LQDASFP 256 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhh--------------------hhcCcHH
Confidence 8877532 4554 3554555555544555555555555442211110 0112345
Q ss_pred chHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccc
Q 013609 227 IPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILS 306 (439)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 306 (439)
...++.++|+++....+.+......+++..+.+-.-+.. .|++...+|++.....+++++++.+.|.+.||.+.-+
T Consensus 257 ~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk--- 332 (480)
T KOG2563|consen 257 KSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK--- 332 (480)
T ss_pred HHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH---
Confidence 667899999999999988888877777777777655555 5788889999999999999999999999999987655
Q ss_pred hhhhhHHHHHHHHHHHHHH-Hhhhcc--cCCh--hHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhh
Q 013609 307 VTRTRKFLNTVGFMVASIA-LMALPI--FRSS--NGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTL 381 (439)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 381 (439)
....+......++ +.+... .... .......+++.+..+..+...-...+...|..-++.+|+.+.++++
T Consensus 333 ------~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~ 406 (480)
T KOG2563|consen 333 ------LTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQI 406 (480)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhH
Confidence 2333333333333 222221 1122 2223333444444444444445566677898889999999999999
Q ss_pred hHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 382 AGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 382 g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
-+.+-..+.+...+..+.. +.+...-+.+...+++..++..+++
T Consensus 407 f~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~l~~~lva~~r 450 (480)
T KOG2563|consen 407 FGVILVFIMGILAEDLGPP-------GNTFPANIFLTVSALLGAILVAFFR 450 (480)
T ss_pred HHHHHHHHHHHHhhccCCC-------CCCccchhHhHHHHHHHHHHHhhhh
Confidence 9999999999888877211 1233334444455555555544443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=185.16 Aligned_cols=352 Identities=11% Similarity=0.015 Sum_probs=228.7
Q ss_pred HHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhccccccccc----ccCc-hHHHHHHHHHHHHHH
Q 013609 15 FISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQ----KIGG-RKVLLFSFVLWSSTC 88 (439)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~ 88 (439)
.++.+...+....+.+.++. +.+.+|++..++|.+..+.-+..++..|+.|.++| |+|| |+.++.+....+++.
T Consensus 12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL 91 (473)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence 34444445555555554444 56667999999999999999999999999999999 6699 455666777777776
Q ss_pred hhhcCCcc-----hHHHHHHHHHHHhhhcccchhhHHHHhhhcc-CCcccchhhHHHhhhhhHHHHHHhhhhhhhhc---
Q 013609 89 FWLKLDPN-----NVFILVVARLLVGVSQGFIFPSIHTVLAQWV-PPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK--- 159 (439)
Q Consensus 89 ~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--- 159 (439)
.++...++ .+..+++.-.+.+++.....+...++..|.. +++||.+..++...+.++|..+.+.+...+.+
T Consensus 92 ~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g 171 (473)
T PRK10429 92 FLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG 171 (473)
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55543321 1345556667778888888888999999998 58899999998777777776665554433222
Q ss_pred ----ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcc
Q 013609 160 ----YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVN 235 (439)
Q Consensus 160 ----~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (439)
..+|+....+.+++..+..+..++..||++++...+.+. +++.+.++.++.+++|
T Consensus 172 ~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~n 230 (473)
T PRK10429 172 GGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAE---------------------GSHLTLKDIVALIYKN 230 (473)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccc---------------------ccCCCHHHHHHHHhcC
Confidence 235666666666666665555555556643221110000 0112233455667799
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHH
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLN 315 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 315 (439)
|.++..+...++..........+.+.|.+...+ +....+.+.....+..+++.++.+++.||+|+|+ ..
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~----------~~ 299 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI----------LW 299 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH----------HH
Confidence 999888888888887777777777766665433 4455566666667888999999999999999998 55
Q ss_pred HHHHHHHHHHHhhhcc----cC-ChhHHHHH-HHHHHHhhhcccccccccccccCC--------ChhhHHHHHHHHHhhh
Q 013609 316 TVGFMVASIALMALPI----FR-SSNGAIFC-SSIALGFLALGRAGFAVNHMDIAP--------RYAGIVMGISNTAGTL 381 (439)
Q Consensus 316 ~~~~~~~~~~~~~~~~----~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~ 381 (439)
..+..+..++.+.+.. .+ +.+..... .+.+.+.... .........|..+ +..|...|..+.+..+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~-~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~ 378 (473)
T PRK10429 300 AGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALF-WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG 378 (473)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH
Confidence 5555444433332211 12 22222222 2222222222 2333333344321 3457799999999999
Q ss_pred hHHHHHHHHHHhhccccc
Q 013609 382 AGIVGVDMTGKLLEAAKT 399 (439)
Q Consensus 382 g~~i~~~~~g~l~~~~~~ 399 (439)
+..+++.+.|.+.+..+-
T Consensus 379 ~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 379 GSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999987644
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=172.10 Aligned_cols=358 Identities=13% Similarity=-0.002 Sum_probs=228.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhhhhhHH-HHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccc----cCchHH
Q 013609 2 MNFPKRYLIVILTFISTCVCYIERVGFSI-AYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQK----IGGRKV 76 (439)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~ 76 (439)
++++.++..-+.-.++.+.........+. ....+.+.+|+++..+|.+..+.-+--++..|+.|.++|| +||||.
T Consensus 2 ~~~~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp 81 (460)
T PRK11462 2 KSEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRP 81 (460)
T ss_pred CCCcccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcch
Confidence 33333443344444554444444444454 3344667789999999999999999999999999999996 798766
Q ss_pred HH-HHHHHHHHHHhhhcCCcc-----hHHHHHHHHHHHhhhcccchhhHHHHhhhccC-CcccchhhHHHhhhhhHHHHH
Q 013609 77 LL-FSFVLWSSTCFWLKLDPN-----NVFILVVARLLVGVSQGFIFPSIHTVLAQWVP-PHERSRSVSLTTSGMYLGAAM 149 (439)
Q Consensus 77 l~-~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~ 149 (439)
.+ ++.+..+++..++-..|+ ....+.+.-.+..++.......-.++.+|..+ +|||++..++...+..+|..+
T Consensus 82 ~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~ 161 (460)
T PRK11462 82 WVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGML 161 (460)
T ss_pred hHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55 566777777766654442 14456666677788888888888899999987 789999999999999999888
Q ss_pred Hhhhhhhhhcc-------cCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccc
Q 013609 150 GMLFLPSLVKY-------NGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAM 222 (439)
Q Consensus 150 g~~~~~~l~~~-------~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (439)
++.+...+.+. .+|+....+.+++.+++..+.+...+|+++.+++ +
T Consensus 162 ~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~---------------------------~ 214 (460)
T PRK11462 162 STVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPT---------------------------T 214 (460)
T ss_pred HHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCcc---------------------------C
Confidence 87776554432 3577777777777666655555554554322100 0
Q ss_pred cccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 013609 223 KAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITK 302 (439)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 302 (439)
.+.++.++..++||.++.+....++..............|.+...|.+ ...+.+.....+..+++.++.+++.||+++|
T Consensus 215 ~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk 293 (460)
T PRK11462 215 TSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKV 293 (460)
T ss_pred CCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 112345677889999888777766666666666666666666555543 3344556677788888999999999999888
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHhhhcccCC--hhHHHHH-HHHHHHhhhcccccccccccccCC--------ChhhHH
Q 013609 303 RILSVTRTRKFLNTVGFMVASIALMALPIFRS--SNGAIFC-SSIALGFLALGRAGFAVNHMDIAP--------RYAGIV 371 (439)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 371 (439)
+ ....+.....+..+.+.+.+. ....... ++.+.+. +...+.......|..+ +..|..
T Consensus 294 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~ 362 (460)
T PRK11462 294 T----------IFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGIS 362 (460)
T ss_pred H----------HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHH
Confidence 7 433222222221222222222 1122222 2222222 2222222333343332 234565
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhcccc
Q 013609 372 MGISNTAGTLAGIVGVDMTGKLLEAAK 398 (439)
Q Consensus 372 ~g~~~~~~~~g~~i~~~~~g~l~~~~~ 398 (439)
.+..+....+|.++++.+.|.+.+..+
T Consensus 363 ~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 363 FAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 677789999999999999999987653
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-20 Score=162.63 Aligned_cols=351 Identities=16% Similarity=0.098 Sum_probs=265.2
Q ss_pred chhhhhhhhhhhhhhhcccccccccccCchHH-HHHHHHHHHHHHhhhcCCcc--hHHHHHHHHHHHhhhcccchhhHHH
Q 013609 45 SKGTILSTFYYGYACSQVPGGWAAQKIGGRKV-LLFSFVLWSSTCFWLKLDPN--NVFILVVARLLVGVSQGFIFPSIHT 121 (439)
Q Consensus 45 ~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~ 121 (439)
..+...++..+..++.+|+.|.++|+.|+||. +.....+..+......+.++ +++..++.-.+..++.........+
T Consensus 59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds 138 (438)
T COG2270 59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence 35778889999999999999999999996655 45555666666666777764 4666667778889999999999999
Q ss_pred HhhhccCCcccchhhHHHhhhhhHHHHHHhhhh---hhhh---------------cccCCchhHHHHhHHHHHHHHHHhh
Q 013609 122 VLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFL---PSLV---------------KYNGPNSVFNAEAALGGMWSLLWFK 183 (439)
Q Consensus 122 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---~~l~---------------~~~~wr~~f~~~~~~~~~~~~~~~~ 183 (439)
++.+..++++-++..++-.....+|..+.-... .... +...=|..+.+.++.-++..+..++
T Consensus 139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~ 218 (438)
T COG2270 139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL 218 (438)
T ss_pred HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence 999999998888887776666666665544442 1111 2334677788888877777777776
Q ss_pred hccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013609 184 YATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYF 263 (439)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (439)
..||.++...+..+. -...-++...+++++.+++.+....++.++..-+.+........|.
T Consensus 219 ~v~~~~~~~~~~~~~-------------------l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg 279 (438)
T COG2270 219 NVHDAEKISSPPPTA-------------------LRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFG 279 (438)
T ss_pred cccccccccccchHH-------------------HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 766655432010000 0012234456678889999999999999999999999999999999
Q ss_pred HHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChh-HHHHHH
Q 013609 264 ELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSN-GAIFCS 342 (439)
Q Consensus 264 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 342 (439)
...+|++..+...+.....+.+++++++.|++.||++.|+ ++..++++..+..+...+..... ..+..+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~----------vl~~~lvi~~~~~~~~~~~~~~~~f~i~gl 349 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKP----------VLMIGLVILSIAALYLIFLEGELDFWILGL 349 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCce----------eehHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 9889999999999999999999999999999999999998 66666666555554444443333 333445
Q ss_pred HHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHH
Q 013609 343 SIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCI 422 (439)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (439)
+++...++.....-+.....+||++.++.+|+++......+..||.+.+.+.+.+ ++-+..+....++..
T Consensus 350 l~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT----------g~~r~g~~~i~vll~ 419 (438)
T COG2270 350 LVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT----------GSSRAGVLSIIVLLL 419 (438)
T ss_pred HHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh----------cchhhHHHHHHHHHH
Confidence 5555555555555566677788899999999999999999999999999999998 578888888888888
Q ss_pred HHHHHHHHhccC
Q 013609 423 LSSFVFLLFSTG 434 (439)
Q Consensus 423 ~~~~~~~~~~~~ 434 (439)
++.+..+..+.+
T Consensus 420 iGl~~L~~v~~~ 431 (438)
T COG2270 420 IGLLLLLRVKVP 431 (438)
T ss_pred hhHhhEEeecCC
Confidence 888877776644
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-19 Score=160.97 Aligned_cols=395 Identities=15% Similarity=0.106 Sum_probs=287.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccc----cCchHHH-HHHH
Q 013609 8 YLIVILTFISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQK----IGGRKVL-LFSF 81 (439)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~l-~~~~ 81 (439)
++.-+.-.++-+............+.. +.+.+|+++..+|.+..+--+--++..|+.|.++|| +||+|.. +.+.
T Consensus 11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ 90 (467)
T COG2211 11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA 90 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence 333444445555555555555554544 566789999999999999999999999999999995 7876654 5566
Q ss_pred HHHHHHHhhhcCCcc-----hHHHHHHHHHHHhhhcccchhhHHHHhhhccC-CcccchhhHHHhhhhhHHHHHHhhhhh
Q 013609 82 VLWSSTCFWLKLDPN-----NVFILVVARLLVGVSQGFIFPSIHTVLAQWVP-PHERSRSVSLTTSGMYLGAAMGMLFLP 155 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~ 155 (439)
+..++.+.++-.+++ +....++.-.+.+++.......-.++.+|..+ ++||.+..++-..+.++|..+...+.+
T Consensus 91 ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~ 170 (467)
T COG2211 91 IPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFP 170 (467)
T ss_pred HHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877763 56677788888999999999999999999986 689999999999999999776665555
Q ss_pred hhhc-------ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCch
Q 013609 156 SLVK-------YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIP 228 (439)
Q Consensus 156 ~l~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (439)
.+.. ..||+..-.+.++++.+..+.+++-.+|++.+..+..+ ..+++.++.
T Consensus 171 plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~----------------------~~~~~~~~~ 228 (467)
T COG2211 171 PLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT----------------------GVKLKLKDS 228 (467)
T ss_pred HHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc----------------------cccccHHHH
Confidence 5443 34788888888888888888888887777664322100 112333445
Q ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchh
Q 013609 229 WKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVT 308 (439)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 308 (439)
+..+++||++...++...+...+.+........|.+..+|.+...............+++.++..++.+|+|+|+
T Consensus 229 ~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~----- 303 (467)
T COG2211 229 FLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK----- 303 (467)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH-----
Confidence 567889999999999888888888888888899998888888888888888888888888999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcccCCh--hHHHHHHHHHHHhhhcccccccccccccCC--------ChhhHHHHHHHHH
Q 013609 309 RTRKFLNTVGFMVASIALMALPIFRSS--NGAIFCSSIALGFLALGRAGFAVNHMDIAP--------RYAGIVMGISNTA 378 (439)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~ 378 (439)
+...+.++..++..++.+.+.. ...++..++.....+...+..+....|... +..|...|..+.+
T Consensus 304 -----~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~ 378 (467)
T COG2211 304 -----LFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFF 378 (467)
T ss_pred -----HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHH
Confidence 8888888888888877776633 233333333334444555566666555432 3468999999999
Q ss_pred hhhhHHHHHHHHHHhhccccccccC----CCCcccchhHHHHH-HHHHHHHHHHHHHhccC
Q 013609 379 GTLAGIVGVDMTGKLLEAAKTTYSD----LSSPESWRAVFFIP-GLLCILSSFVFLLFSTG 434 (439)
Q Consensus 379 ~~~g~~i~~~~~g~l~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 434 (439)
+.+|.+++..+.|++.+..+-.... .....+.+..+.+. +++.+++.+...+++..
T Consensus 379 ~K~g~ala~~~~g~~L~~~Gyv~~~~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~~y~L~ 439 (467)
T COG2211 379 RKLGLALAGFIPGWILGAIGYVPNVSAQSASALFGIRFLFIILPALLLLLAAIIIFFYKLN 439 (467)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999877543222 22334455555544 44445555555544433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-18 Score=153.26 Aligned_cols=367 Identities=16% Similarity=0.159 Sum_probs=256.7
Q ss_pred HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccC-----chHHHHH-HHHHHHHHHhhhcCC-----c-------c
Q 013609 35 AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIG-----GRKVLLF-SFVLWSSTCFWLKLD-----P-------N 96 (439)
Q Consensus 35 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~-------~ 96 (439)
+..|++++..-.+...++..+... ..+.+|+.+|+.+ ||..+++ +......+..+.+++ . +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 567889988888888888876655 5899999999999 8877655 444444444333221 1 1
Q ss_pred h-HH--HHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHH---
Q 013609 97 N-VF--ILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAE--- 170 (439)
Q Consensus 97 ~-~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~--- 170 (439)
. .+ ...+.-.+.|+|.+...+...++++|..|+|+|+++.++.....-+|.+++..+.+.+.+.++-.-..-+.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 1 22 33445567799999999999999999999999999999999999999999999999998877643333222
Q ss_pred hHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHH
Q 013609 171 AALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHY 250 (439)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (439)
+++.++..++.. +..|++.++..+.+ ++++.+..+.+++++.+|+........++...
T Consensus 165 a~i~~~l~~ia~-wg~E~r~~~~~~~~---------------------~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~ 222 (403)
T PF03209_consen 165 ALIALLLNLIAL-WGQEPRRSRRAAAA---------------------ERPRPPFREAWRQVWASPQARRFFVFLFLGTL 222 (403)
T ss_pred HHHHHHHHHHHH-HhcccCCcccccCC---------------------CCCCccHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 222222222222 22333322211000 02224445677888899998888888888888
Q ss_pred HHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHH-hhhccccchhhhhHHHHHHHHHHHHHHHhhh
Q 013609 251 ALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH-LITKRILSVTRTRKFLNTVGFMVASIALMAL 329 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
+++.=...+-.|--+++|+++.+...+......+..++....+++..| .++++ ....++..++.++.++
T Consensus 223 a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~----------~a~~G~~~~~~~f~li 292 (403)
T PF03209_consen 223 AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKR----------TAALGCLLGALAFALI 292 (403)
T ss_pred HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH----------HHHHHHHHHHHHHHHH
Confidence 888888888889999999999999999999999999999999988763 33333 4455555555555443
Q ss_pred cc---cCChhH-HHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCC
Q 013609 330 PI---FRSSNG-AIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLS 405 (439)
Q Consensus 330 ~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~ 405 (439)
.. ..+.+. ....++++++.+.+........+.-..+++.|..+|.-...+.++..++..+.|.+.|....-..+ +
T Consensus 293 i~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~-~ 371 (403)
T PF03209_consen 293 ILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN-S 371 (403)
T ss_pred HHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C
Confidence 33 333333 333444555555555555666666667789999999999999999999999999999865322111 1
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 406 SPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
...+|..+|.+-++..+++..+...+.+++
T Consensus 372 ~~~aY~~VF~lEa~ll~~a~~ll~~l~~~~ 401 (403)
T PF03209_consen 372 PALAYGVVFALEAVLLLAALVLLGRLDRRE 401 (403)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 335788999998888888887776665554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-22 Score=188.48 Aligned_cols=379 Identities=13% Similarity=0.117 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhc
Q 013609 13 LTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLK 92 (439)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 92 (439)
.+++..+........+...++.+.+.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.+.++.++++++++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence 34455555567777788889999999999999999999999999999999999999998888999999999999988876
Q ss_pred CCcc--------------------------------------------------hHHHHHHHHHHHhhhcccchhhHHHH
Q 013609 93 LDPN--------------------------------------------------NVFILVVARLLVGVSQGFIFPSIHTV 122 (439)
Q Consensus 93 ~~~~--------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~ 122 (439)
+- | -+..++++.++.|+|....++...+|
T Consensus 87 lP-hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 87 LP-HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred cc-HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 52 1 14578899999999999999999999
Q ss_pred hhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc---------------------cC-CchhHHHHhHHHHHHHHH
Q 013609 123 LAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY---------------------NG-PNSVFNAEAALGGMWSLL 180 (439)
Q Consensus 123 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---------------------~~-wr~~f~~~~~~~~~~~~~ 180 (439)
+-|..++++-+..+|+..+...+|.++|..+++.+.+. .| |-..|++.+.+.++..+.
T Consensus 166 iDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip 245 (539)
T PF03137_consen 166 IDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP 245 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877641 11 555566677777776666
Q ss_pred HhhhccCCCCCCCCCCCcccccCccCcccchhhhhcc----ccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHH
Q 013609 181 WFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDN----GGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLM 256 (439)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (439)
.+.++++-|+..+.+...+...++..+..++...+.+ .....++.....+++++||.+....+..........++.
T Consensus 246 l~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~ 325 (539)
T PF03137_consen 246 LFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFA 325 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555521111111111000000000000000 112234455666889999999999999999999999999
Q ss_pred HHHHHHHHHhhCCcccccchhhhhhHH-HHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHH-Hhhhcc--c
Q 013609 257 NWLPTYFELGLQLSLQEMGSSKMMPYL-NMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIA-LMALPI--F 332 (439)
Q Consensus 257 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~ 332 (439)
++.|.|++.+++.++.+++.+.....+ +..+|.+++|++.+|++-+.. ...+....... +..+. ...+.. .
T Consensus 326 tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~----~~~~~~~v~~~-v~~~~~~~~~~~~C~ 400 (539)
T PF03137_consen 326 TFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSAR----GAAKFCIVVSI-VSVILYSPLFFLGCP 400 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHH----HHHHHHHHHHH-HHHHHHHHHHeecCC
Confidence 999999999999999999888766554 677888999999998865441 11111122211 11111 111100 0
Q ss_pred ---------CC----------------------------------h-----hHHHHHHHH-HHHhhhccccccccccccc
Q 013609 333 ---------RS----------------------------------S-----NGAIFCSSI-ALGFLALGRAGFAVNHMDI 363 (439)
Q Consensus 333 ---------~~----------------------------------~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 363 (439)
+. . ...++...+ .+.......+........+
T Consensus 401 ~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V 480 (539)
T PF03137_consen 401 NPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCV 480 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccC
Confidence 00 0 001111111 1112233455566677788
Q ss_pred CCChhhHHHHHHHHHhhh-hHHHHHHHHHHhhccc
Q 013609 364 APRYAGIVMGISNTAGTL-AGIVGVDMTGKLLEAA 397 (439)
Q Consensus 364 ~~~~~~~~~g~~~~~~~~-g~~i~~~~~g~l~~~~ 397 (439)
++|+|+.+.|+...+.++ |.+-+|.++|.+.|..
T Consensus 481 ~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 481 PPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -----------------------------------
T ss_pred ChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 899999999999877665 6788999999999965
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=158.10 Aligned_cols=390 Identities=16% Similarity=0.196 Sum_probs=253.1
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHh--hCCCccchhhhhhhhhhhhhhhcccccccccccCc-hHHHHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADA--AGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGG-RKVLLFS 80 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~ 80 (439)
++.+|+.+.+..+..++...+.+.+.+..-+..++ .+.+.+..|++.++..++.+++.+.+|....|.++ |+.++.+
T Consensus 29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s 108 (488)
T KOG2325|consen 29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS 108 (488)
T ss_pred cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence 46788899999999999999998888877777777 56677788999999999999999999999999987 8899999
Q ss_pred HHHHHHHHhhh-cC--Ccc-hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhh
Q 013609 81 FVLWSSTCFWL-KL--DPN-NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPS 156 (439)
Q Consensus 81 ~~~~~~~~~~~-~~--~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 156 (439)
.++..+++++. ++ .++ .-+.++++|++.|+|.+ ......+++++....++|.|+++....+..+|..+||.+...
T Consensus 109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA 187 (488)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence 99999999887 22 233 67899999999999988 568899999999889999999999999999999999988776
Q ss_pred hhcc--cC-----------CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhcccccccc
Q 013609 157 LVKY--NG-----------PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMK 223 (439)
Q Consensus 157 l~~~--~~-----------wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (439)
+... -| ...+-|+.+++.++..++...+.+|.+++..++...++.++ ..+.++.+
T Consensus 188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~------------~~~~~~~~ 255 (488)
T KOG2325|consen 188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEE------------KSDIEKVK 255 (488)
T ss_pred HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhh------------ccchhhhc
Confidence 6531 11 23566788888888777777777787766533322111000 00001111
Q ss_pred ccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchh----hhhhHHHHHHHHHHHHHHH-HH
Q 013609 224 AAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSS----KMMPYLNMFIFSNIGGVVA-DH 298 (439)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~g~l~-d~ 298 (439)
.++.++ +..+.+.+..+...+......+..+.+....++.+.+++... .+..++....-.+...... .+
T Consensus 256 ~~~~d~------~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~ 329 (488)
T KOG2325|consen 256 KPKLDW------VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGK 329 (488)
T ss_pred cCChhH------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 122221 223344455555555555556666666666677776665433 2232222222222222221 12
Q ss_pred hhhccccchhhhhHHHHHHHHHHHHHHH--hhhccc--C------C----------hh--------HHHHHHHHHHHhhh
Q 013609 299 LITKRILSVTRTRKFLNTVGFMVASIAL--MALPIF--R------S----------SN--------GAIFCSSIALGFLA 350 (439)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~------~----------~~--------~~~~~~~~~~~~~~ 350 (439)
+.+|+ .+..+........ ...++. . + .. ......+......+
T Consensus 330 i~~r~----------~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g 399 (488)
T KOG2325|consen 330 IDKRR----------IILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFG 399 (488)
T ss_pred hccce----------eeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheec
Confidence 22233 2233322222222 222111 0 0 00 00111111111112
Q ss_pred cccc-----cccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHH
Q 013609 351 LGRA-----GFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSS 425 (439)
Q Consensus 351 ~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (439)
...| ....+.+.+.|+++++..|.+......+..++|.+........ |++..+.+..+..++..
T Consensus 400 ~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~-----------g~~~v~~~~~~~~l~~~ 468 (488)
T KOG2325|consen 400 IAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS-----------GPRPVWIILLCLLLVVA 468 (488)
T ss_pred cccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc-----------CccHHHHHHHHHHHHHH
Confidence 2222 3345566678899999999999999999999999999999888 88888887777666665
Q ss_pred HHHHHhcc
Q 013609 426 FVFLLFST 433 (439)
Q Consensus 426 ~~~~~~~~ 433 (439)
.++....+
T Consensus 469 ~l~~~~~~ 476 (488)
T KOG2325|consen 469 ALWIVFLK 476 (488)
T ss_pred HHHHHHHH
Confidence 55544433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=159.62 Aligned_cols=292 Identities=16% Similarity=0.143 Sum_probs=227.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHH
Q 013609 9 LIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTC 88 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 88 (439)
..+.++++..+...+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+...|.-|-|.+-++++++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 34566777778888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCC--------------------c---------------------------c-h--HH-HHHHHHHHHhhhcccchh
Q 013609 89 FWLKLD--------------------P---------------------------N-N--VF-ILVVARLLVGVSQGFIFP 117 (439)
Q Consensus 89 ~~~~~~--------------------~---------------------------~-~--~~-~l~~~r~l~G~~~~~~~~ 117 (439)
+++++- + + + ++ .++++.++.|+|....++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 988763 0 0 0 22 677889999999999999
Q ss_pred hHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhccc-------------------CCchhHHHHhHHHHHHH
Q 013609 118 SIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN-------------------GPNSVFNAEAALGGMWS 178 (439)
Q Consensus 118 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------------------~wr~~f~~~~~~~~~~~ 178 (439)
...+|+-|...+++-+..+|+......+|.++|.++++++.+.+ -|..-|++.+.+.++..
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876511 15556777777777777
Q ss_pred HHHhhhccCCCCCCCCCCCcc-cccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 013609 179 LLWFKYATDPPRSEHPKASAA-GFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMN 257 (439)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
+..+++.++.|+..+++...+ +..+.+.+ .........++-++.....+++++||.+....+...+....+.++.+
T Consensus 337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~---~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~t 413 (735)
T KOG3626|consen 337 VPLFFFPKELPKSQKRKRARDLHVLKTESG---GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYIT 413 (735)
T ss_pred HHHHhCcccCccccccchhhhhcccccccc---cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHH
Confidence 777777666665543211110 00000000 00000000012234455678899999999999999999999999999
Q ss_pred HHHHHHHHhhCCcccccchhhhhhHH-HHHHHHHHHHHHHHHhhhcc
Q 013609 258 WLPTYFELGLQLSLQEMGSSKMMPYL-NMFIFSNIGGVVADHLITKR 303 (439)
Q Consensus 258 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~ 303 (439)
++|.|+++.+|.++..+..+....++ +..+|..++|++.+|+..+.
T Consensus 414 FlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~ 460 (735)
T KOG3626|consen 414 FLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSA 460 (735)
T ss_pred hhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccH
Confidence 99999999999999999888765554 55667788899998876554
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-17 Score=151.83 Aligned_cols=364 Identities=16% Similarity=0.116 Sum_probs=258.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCcc-chhhhhhhh----hhhhhhhcccccccccccCchHHHHHHHH
Q 013609 8 YLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQS-SKGTILSTF----YYGYACSQVPGGWAAQKIGGRKVLLFSFV 82 (439)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~g~~~s~~----~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 82 (439)
+.......+-.+...+.........+.....++.+.. +.+...... .+...+.++..|.++||+|||..+.+..+
T Consensus 21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~ 100 (463)
T KOG2816|consen 21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF 100 (463)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence 3444555566666666666666666666665554332 233333333 56778899999999999999999999999
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHHhhhc--ccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc
Q 013609 83 LWSSTCFWLKLDPNNVFILVVARLLVGVSQ--GFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY 160 (439)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~--~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 160 (439)
...+......+. .+|.++ +.|+.. +.......++++|....++|...+++.+.....+..++|.+++.+.+.
T Consensus 101 ~~~l~~~~~~~~--~~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~ 174 (463)
T KOG2816|consen 101 GTILPALCLLFQ--GYWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF 174 (463)
T ss_pred HHHHhHHHHHHH--HHHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 988888877775 355544 444332 345678888999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCC-CcccccCccCcccchhhhhccccccccccCchHHhhhcchhHH
Q 013609 161 NGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKA-SAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVW 239 (439)
Q Consensus 161 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (439)
.|.-..|.+..+..++..+....+.||+..+++++. +..+.. ...... .+..+........-.+|..+
T Consensus 175 ~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~r~~l 243 (463)
T KOG2816|consen 175 LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELT-PGSLDS----------SHVADAFQSLTKVGPDRLLL 243 (463)
T ss_pred cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccC-CCcccc----------hhhhhhhhhhcccCCCccch
Confidence 999999999999999888888888888766654331 100000 000000 00011111111222345555
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHH-HHHHHhhhccccchhhhhHHHHHH
Q 013609 240 AIVVNNFTFHYALYVLMN-WLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGG-VVADHLITKRILSVTRTRKFLNTV 317 (439)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~ 317 (439)
.+++..+........-.. ..+.|++..+++++.+.+.+.+.......++..+.. .+...++.++ ....
T Consensus 244 ~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~----------~i~l 313 (463)
T KOG2816|consen 244 LLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR----------LISL 313 (463)
T ss_pred HHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------HhhH
Confidence 555555544444332222 446777888999999999888888888989987776 6677777777 8899
Q ss_pred HHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 318 GFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
|+..-.+....+.+..+.+.......+........+.........+.++++|++.++...+..+.+.++|.+.+.+...+
T Consensus 314 Gl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 314 GLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999998888877776666555555444444444555566677899999999999999999999999999997765
Q ss_pred c
Q 013609 398 K 398 (439)
Q Consensus 398 ~ 398 (439)
.
T Consensus 394 ~ 394 (463)
T KOG2816|consen 394 L 394 (463)
T ss_pred H
Confidence 3
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=138.71 Aligned_cols=411 Identities=14% Similarity=0.132 Sum_probs=242.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHH-HHHHhhC----CCccchhhhhhhhhhhhhhhccccccccccc-CchHHHHHHHH
Q 013609 9 LIVILTFISTCVCYIERVGFSIAYT-AAADAAG----VNQSSKGTILSTFYYGYACSQVPGGWAAQKI-GGRKVLLFSFV 82 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~----~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~ 82 (439)
+.+..++..-+...++.+.+...+. .+..+++ .|+++..-+.+.|..-.-+...++|+++||+ |+|+++..+.+
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 3455566667777776666655444 4556666 9999988888888888888999999999996 99999999999
Q ss_pred HHHHHHhhhcCCc-chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCc--ccchhhHHHhhhhhHHHHHHhhhhhhhhc
Q 013609 83 LWSSTCFWLKLDP-NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPH--ERSRSVSLTTSGMYLGAAMGMLFLPSLVK 159 (439)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 159 (439)
++.+|-++.+.++ .+...+.++-.+.++|.|..=+...+++.|.+|++ +|-..++++.++.++|..++|.+.+++.+
T Consensus 101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~ 180 (498)
T COG3104 101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI 180 (498)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence 9999999998883 36888899999999999999999999999999865 47888999999999999999999999999
Q ss_pred ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccC-ccCcccc------------hhhhhcccc-------
Q 013609 160 YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGE-SLLPMRD------------QKVKVDNGG------- 219 (439)
Q Consensus 160 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~------- 219 (439)
..||+..|-..++-..+.++..+ ..+..-.....+.+..+... ....... ....+....
T Consensus 181 ~~g~~~gF~~aavGm~~gl~~f~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 259 (498)
T COG3104 181 NYGWHVGFGLAAVGMIIGLVIFL-LGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVIS 259 (498)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHH-HccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887766555444333 33222111111111110000 0000000 000000000
Q ss_pred ----c--cccccCchHHhhhcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCcccccchhhhhhHHHH
Q 013609 220 ----S--AMKAAKIPWKRIVVNLPVW---AIVVNNFTFHYALYVLMNWLPTYFELG-----LQLSLQEMGSSKMMPYLNM 285 (439)
Q Consensus 220 ----~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~ 285 (439)
. -.+....+-.+ -.+++.+ .+.+.....+..+....+.+..|..+. +|+ .-..++..+...+.-
T Consensus 260 i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~-~vp~~~fQslNp~~I 337 (498)
T COG3104 260 ILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGF-EVPPAWFQSLNPFFI 337 (498)
T ss_pred HHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccce-ecCHHHHHhhCHHHH
Confidence 0 00000000000 0011222 222223333333333334444444332 222 123457778888888
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhccc-------C---ChhH-HHHHHHHHHHhhhcccc
Q 013609 286 FIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIF-------R---SSNG-AIFCSSIALGFLALGRA 354 (439)
Q Consensus 286 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~-~~~~~~~~~~~~~~~~~ 354 (439)
++.+++..++-.|.++++. ...... =..+++.+++.+++.+... . +.++ ....++..++-....+.
T Consensus 338 ii~~pI~a~l~~~l~~~~~-~ps~~~--KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpv 414 (498)
T COG3104 338 ILFSPILAALWTKLGRGNK-QPSTPI--KFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPV 414 (498)
T ss_pred HHHHHHHHHHHhHhhcCCC-CCCcch--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHH
Confidence 8888888888888666541 111111 2334444444444443322 1 1222 22333334444444444
Q ss_pred cccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 013609 355 GFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLL 430 (439)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (439)
.........|+...+..+++.......+..++..+.+.-.+ . .+.++.......|..++...++.....+.
T Consensus 415 GLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~----~~~~~~~~~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 415 GLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T----DPAYTAFIEGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c----chhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55556666666778888887777666666666655553111 0 01112235566777777776655555443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-15 Score=141.78 Aligned_cols=385 Identities=15% Similarity=0.120 Sum_probs=230.5
Q ss_pred hHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccC-----chHHHHHHHHHHHHHHhhhcCCcc---hHH
Q 013609 28 FSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIG-----GRKVLLFSFVLWSSTCFWLKLDPN---NVF 99 (439)
Q Consensus 28 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~~~~---~~~ 99 (439)
..+..|.+.+++|+++++.....+...+... ..++.|.++|.+- ||+-++++.++.+++....+..++ +..
T Consensus 9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 4466778899999999999888887777665 4688899999863 556666677777555555555432 567
Q ss_pred HHHHHHHHHhhhcccchhhHHHHhhhccC--CcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHH
Q 013609 100 ILVVARLLVGVSQGFIFPSIHTVLAQWVP--PHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMW 177 (439)
Q Consensus 100 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~ 177 (439)
...+.-++..+|.......+.+++.|... +++||...+.......+|.+++..++|.+.+..++|..|.+.+++..+.
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~ 167 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM 167 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence 77777788889999999999999999984 3447788888899999999999999999999999999999998888777
Q ss_pred HHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHH-HHHHHHHHHHHHH
Q 013609 178 SLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVV-NNFTFHYALYVLM 256 (439)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 256 (439)
.+..++..+|+++.... +..+..++..+.. ....++.....++.+++|.+|...+ ..++.......-.
T Consensus 168 ~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 236 (433)
T PF03092_consen 168 LIVALFLLEERKVRPAD--EVFSFGKEEVPCL---------FGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISS 236 (433)
T ss_pred HHHHHHhhhhccccccc--hhhcccccccchh---------hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCC
Confidence 66666666662222211 0000000000000 0002333445567777888877665 2222211111100
Q ss_pred HHHHHHHHHhhC---CcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhh-hccc
Q 013609 257 NWLPTYFELGLQ---LSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMA-LPIF 332 (439)
Q Consensus 257 ~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 332 (439)
...-.+..+..+ +|+...+.+..+..++.+++..+..+...+..-|+ +.....++..+..+. +...
T Consensus 237 a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~----------~~~~t~~~~~~~~l~~~~lv 306 (433)
T PF03092_consen 237 ASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRR----------IFVVTTLVSVLASLFDLLLV 306 (433)
T ss_pred ccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH----------HHHHHHHHHHHHhcccEEEE
Confidence 100011122344 66666666555545555555554444333333333 334444333332221 1111
Q ss_pred ---------CChhHHHHH-HHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccccc
Q 013609 333 ---------RSSNGAIFC-SSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYS 402 (439)
Q Consensus 333 ---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~ 402 (439)
++.+..+.- .+..........|......+..|+...|+.+++..++.++|..++..+...+.+..+-...
T Consensus 307 ~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~ 386 (433)
T PF03092_consen 307 TRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRD 386 (433)
T ss_pred EEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 111111111 1122222222234444555566778899999999999999999999999998887752221
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 013609 403 DLSSPESWRAVFFIPGLLCILSSFVFLLFSTGERI 437 (439)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (439)
+ ..+.....++..++.++...+..++++++|+
T Consensus 387 ~---f~~l~~lili~~~~~ll~l~ll~lLp~~~~~ 418 (433)
T PF03092_consen 387 D---FSNLWLLILICSVIQLLPLPLLFLLPPQKRI 418 (433)
T ss_pred c---ccchHHHHHHHHHHHHHHHHHHHHcCCCchh
Confidence 1 1234444555566666666666666665443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=126.30 Aligned_cols=139 Identities=22% Similarity=0.342 Sum_probs=126.1
Q ss_pred hhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhcc
Q 013609 48 TILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWV 127 (439)
Q Consensus 48 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 127 (439)
++.+.+.++..++.++.|++.||+|||+.+..+.....++.+.....+ +++.+.+.+++.|++.+...+...+++.|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (141)
T TIGR00880 2 LLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-NITVLIIARFLQGFGAAFALVAGAALIADIY 80 (141)
T ss_pred EEEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 456677889999999999999999999999999999999998888886 8999999999999999999999999999999
Q ss_pred CCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccC
Q 013609 128 PPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATD 187 (439)
Q Consensus 128 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 187 (439)
|+++|++..++.+....+|..+++.+.+.+.+..+|++.+++.+...++..+...+..||
T Consensus 81 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 81 PPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999998999999999888877776666666554
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=143.30 Aligned_cols=165 Identities=16% Similarity=0.156 Sum_probs=137.7
Q ss_pred hhhHHHHHHHHHhhCCCc--------cchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcc-
Q 013609 26 VGFSIAYTAAADAAGVNQ--------SSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPN- 96 (439)
Q Consensus 26 ~~~~~~~~~i~~~~~~s~--------~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~- 96 (439)
.......+...++.+.++ ++.+...++..+...++.++.|+++||+|||+++..+.++.+++..+......
T Consensus 225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~ 304 (418)
T TIGR00889 225 QITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPE 304 (418)
T ss_pred HHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 334455566666766543 56699999999999999999999999999999999999999888766655321
Q ss_pred --hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHh-hhhhHHHHHHhhhhhhhhcc------cCCchhH
Q 013609 97 --NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTT-SGMYLGAAMGMLFLPSLVKY------NGPNSVF 167 (439)
Q Consensus 97 --~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~------~~wr~~f 167 (439)
+++.+++.+++.|++.+...+....++.|++|+++|++++|+.+ ...++|..+||.++|.+.++ +||+..|
T Consensus 305 ~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f 384 (418)
T TIGR00889 305 YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMW 384 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHH
Confidence 24667788999999999888999999999999999999999997 67899999999999999886 5699999
Q ss_pred HHHhHHHHHHHHHHhhhccCCCC
Q 013609 168 NAEAALGGMWSLLWFKYATDPPR 190 (439)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~ 190 (439)
.+.+++.++..++.+++.+|+.+
T Consensus 385 ~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 385 LFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHHHHHHhCCccc
Confidence 99999888888888888876633
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=126.69 Aligned_cols=245 Identities=17% Similarity=0.180 Sum_probs=172.9
Q ss_pred hhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHH
Q 013609 26 VGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVAR 105 (439)
Q Consensus 26 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r 105 (439)
..-+|..-.+-+++|.++.|++.+.........+..++.|.++||+|||+.-++.+++++++++.- ..+ +++.++++|
T Consensus 51 WLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~-~~~~L~~GR 128 (354)
T PF05631_consen 51 WLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSS-NYPVLLLGR 128 (354)
T ss_pred HhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hcc-ccHHHHHHH
Confidence 344555555667899999999999999999999999999999999999999999999999999754 445 899999999
Q ss_pred HHHhhhcccchhhHHHHh-hhccC----CcccchhhHHHh-hhhhHHHHHHhhhhhhhhcccC--CchhHHHHhHHHHHH
Q 013609 106 LLVGVSQGFIFPSIHTVL-AQWVP----PHERSRSVSLTT-SGMYLGAAMGMLFLPSLVKYNG--PNSVFNAEAALGGMW 177 (439)
Q Consensus 106 ~l~G~~~~~~~~~~~~~i-~~~~~----~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~--wr~~f~~~~~~~~~~ 177 (439)
++.|++.+....+--++. .|.-. ++..+..++... ..+++-.+.+..++..+.+..+ -..+|....++.++.
T Consensus 129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~ 208 (354)
T PF05631_consen 129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA 208 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999888888875 45432 222233333333 2333444555556666666554 478888887777776
Q ss_pred HHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHH-
Q 013609 178 SLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLM- 256 (439)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 256 (439)
.+++...-+|...+..++. +..++..+.++.+.+||+++.+.++..+...+++.+.
T Consensus 209 ~~~I~~~W~ENyg~~~~~~-----------------------~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVf 265 (354)
T PF05631_consen 209 AVLILKTWPENYGDTSSSS-----------------------SLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVF 265 (354)
T ss_pred HHHHHhcccccCCCccccc-----------------------chHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhee
Confidence 6666555455443321110 1112333456678889999999999999988888776
Q ss_pred HHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q 013609 257 NWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH 298 (439)
Q Consensus 257 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 298 (439)
.|.|..- . +-+...-|++++...++.++|+.+..++..|
T Consensus 266 lWtPaL~-~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 266 LWTPALD-P--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred eeeceec-C--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455443 1 1123346888998889999998888665543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=143.77 Aligned_cols=153 Identities=10% Similarity=0.046 Sum_probs=132.8
Q ss_pred hhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchh
Q 013609 38 AAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFP 117 (439)
Q Consensus 38 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 117 (439)
+.+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++..+.++++ +.+.+++.+++.|++.+...+
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~l~g~~~~~~~~ 334 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT-GPLEVSILKLLHAFEVPFLLV 334 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHH
Confidence 3456667889999999999999999999999999999999999999999888888886 899999999999999888788
Q ss_pred hHHHHhhhccCCcccchhhHH-HhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccCCCCC
Q 013609 118 SIHTVLAQWVPPHERSRSVSL-TTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRS 191 (439)
Q Consensus 118 ~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~ 191 (439)
....++.|.+|++.|+...+. .+....+|..+++.+.|++.+..|||..|.+.+++.++..++.++..++++++
T Consensus 335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 409 (420)
T PRK09528 335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDREL 409 (420)
T ss_pred HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 888999999999999887665 66778899999999999999999999999998888877666666666555444
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-15 Score=143.18 Aligned_cols=171 Identities=11% Similarity=0.011 Sum_probs=127.5
Q ss_pred HHhhhhhHHHHHHHH-HhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhh---hcCCcch
Q 013609 22 YIERVGFSIAYTAAA-DAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFW---LKLDPNN 97 (439)
Q Consensus 22 ~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~ 97 (439)
....+......|.+. +++|.+..+.++..+...++..++.+..|+++||+|||+++..+.++..++... ...++ +
T Consensus 263 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~-~ 341 (490)
T PRK10642 263 NVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN-V 341 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 334444555667654 567888888888888889999999999999999999999988877654433322 22343 6
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhccc-CCchhHHHHhHHHHH
Q 013609 98 VFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN-GPNSVFNAEAALGGM 176 (439)
Q Consensus 98 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~ 176 (439)
...++++|++.|++.+........++.|.+|++.|+++++.......++..++|.+.+++.+.. +|+.++++..+++++
T Consensus 342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i 421 (490)
T PRK10642 342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVI 421 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 7888889999998877777778888999999999999999755545566778888888887754 478777776666665
Q ss_pred HHHHHhhhccCCCCCCCC
Q 013609 177 WSLLWFKYATDPPRSEHP 194 (439)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~ 194 (439)
..+..+ +.||+|++..+
T Consensus 422 ~~~~~~-~~pes~~~~~~ 438 (490)
T PRK10642 422 GLITGV-TMKETANRPLK 438 (490)
T ss_pred HHHHHH-HhccccCCCCC
Confidence 555444 55898887543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=139.09 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=119.1
Q ss_pred hhHHHHHHHH-HhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCc-chHHHHHHH
Q 013609 27 GFSIAYTAAA-DAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDP-NNVFILVVA 104 (439)
Q Consensus 27 ~~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 104 (439)
.....+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+..+..+..+...... .+.+.+.+.
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL 372 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3456677766 58999999999999999999999999999999999999999888777666655443332 144455555
Q ss_pred HHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHH
Q 013609 105 RLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGM 176 (439)
Q Consensus 105 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~ 176 (439)
.++.+.......+...+++.|.+|+++|++.+++......+|..+||.+++.+.+.+||+..+...+....+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 555544433455677788999999999999999999999999999999999999999999888666554433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-14 Score=133.48 Aligned_cols=161 Identities=18% Similarity=0.223 Sum_probs=134.4
Q ss_pred hhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHH
Q 013609 26 VGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVAR 105 (439)
Q Consensus 26 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r 105 (439)
.......|.+.++.|. ++.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++..+..+.+ +.+.+++.+
T Consensus 233 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 309 (399)
T PRK05122 233 GTIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP-SPWMALIGA 309 (399)
T ss_pred HHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHH
Confidence 3344455555556665 3456777888899999999999999999999999999888888888888876 888888999
Q ss_pred HHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhc
Q 013609 106 LLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYA 185 (439)
Q Consensus 106 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 185 (439)
++.|++.+...+.......|..|+++|+++.++.+....+|..+++.+.+.+.+..||+..|++.+...++..+...+..
T Consensus 310 ~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 310 ALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999888888888889999999999999999999999999999999999999999999998888777666655554
Q ss_pred cCCC
Q 013609 186 TDPP 189 (439)
Q Consensus 186 ~~~~ 189 (439)
+++|
T Consensus 390 ~~~~ 393 (399)
T PRK05122 390 RRAP 393 (399)
T ss_pred cccc
Confidence 4333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-14 Score=132.54 Aligned_cols=161 Identities=19% Similarity=0.159 Sum_probs=134.1
Q ss_pred hhhHHHHHHHHHhhCCCccc----hhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHH
Q 013609 26 VGFSIAYTAAADAAGVNQSS----KGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFIL 101 (439)
Q Consensus 26 ~~~~~~~~~i~~~~~~s~~~----~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l 101 (439)
....+..+.+.++.+.+..+ .+.+.+.+.++..++.+..|+++||+|||+.+..+..+..++.+...+.+ +.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 314 (408)
T PRK09874 236 GSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ-TPLQL 314 (408)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc-cHHHH
Confidence 44455566665554433333 45566677788889999999999999999999999888888887777776 78889
Q ss_pred HHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHH
Q 013609 102 VVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLW 181 (439)
Q Consensus 102 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~ 181 (439)
++.+++.|++.+...+...+.+.+..|+++|++.+++.+....+|..+||.+++.+.+..||++.|++.+++.++..+..
T Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 315 GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888766666
Q ss_pred hhhccC
Q 013609 182 FKYATD 187 (439)
Q Consensus 182 ~~~~~~ 187 (439)
++..++
T Consensus 395 ~~~~~~ 400 (408)
T PRK09874 395 WNSLRR 400 (408)
T ss_pred HHHHHH
Confidence 554433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-14 Score=130.10 Aligned_cols=168 Identities=27% Similarity=0.407 Sum_probs=150.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhh-CCCccchhhhhhhhhhhhhhhcccccccccccCchH-HHHHHHHHHHHHHhhh
Q 013609 14 TFISTCVCYIERVGFSIAYTAAADAA-GVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRK-VLLFSFVLWSSTCFWL 91 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~ 91 (439)
..+..+.............|.+.++. |.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (352)
T cd06174 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL 259 (352)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34445555566666677777776665 899999999999999999999999999999999999 9999999999999999
Q ss_pred cCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHh
Q 013609 92 KLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEA 171 (439)
Q Consensus 92 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~ 171 (439)
...+ +.+.+.+..++.|++.+...+...+++.|..|+|+|++.+++.+....+|..+++.+.+.+.+..+|+..+.+.+
T Consensus 260 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~ 338 (352)
T cd06174 260 ALAP-SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILA 338 (352)
T ss_pred HHhc-cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHH
Confidence 9886 899999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHh
Q 013609 172 ALGGMWSLLWF 182 (439)
Q Consensus 172 ~~~~~~~~~~~ 182 (439)
++.++..+...
T Consensus 339 ~~~~i~~i~~~ 349 (352)
T cd06174 339 ALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHhe
Confidence 88887665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-14 Score=139.73 Aligned_cols=137 Identities=17% Similarity=0.154 Sum_probs=118.0
Q ss_pred hhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCC
Q 013609 50 LSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPP 129 (439)
Q Consensus 50 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 129 (439)
..+..++..++.++.|+++||+|||+++..+.++.+++.++.++.+ +...+++.+++.|++.+...+...++++|++|.
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~-s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt 679 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN-SESAMIALLCLFGGLSIAAWNALDVLTVELYPS 679 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 4566688899999999999999999999999999999999999987 788888889999988888899999999999999
Q ss_pred cccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccCCC
Q 013609 130 HERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPP 189 (439)
Q Consensus 130 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
++|++++|+.++...+|.+++|.+++.+.+. +...+|++.+++.++..++.+ ++||+.
T Consensus 680 ~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~ 737 (742)
T TIGR01299 680 DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTR 737 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCc
Confidence 9999999999999999999999999988763 456778877777766555555 446644
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=128.82 Aligned_cols=173 Identities=12% Similarity=0.153 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHH
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLN 315 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 315 (439)
|+++.+.+..++...+......++|.|+++.+|+|+.+.++..+...+...+.++..|+++||+++|+ .+
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~----------~~ 76 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR----------YM 76 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch----------hH
Confidence 45677778888888888999999999999889999999999999999999999999999999999998 77
Q ss_pred HHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhccccccccccc-ccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhh
Q 013609 316 TVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHM-DIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLL 394 (439)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 394 (439)
..+.++..++.+.+.+.++.+..+....+.........+....... ..++++|+++.|+.+...++|..++|.+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 77 LLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776665544433322222222222233334433 455688999999999999999999999999887
Q ss_pred ccccccccCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 013609 395 EAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLL 430 (439)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (439)
+ . +|+.+|.+.+++.+++.+....
T Consensus 157 ~-~-----------g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 157 M-Q-----------SINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred H-h-----------ccCcHHHHHHHHHHHHHHHHHH
Confidence 4 4 6889999888777776554433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=130.79 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=131.6
Q ss_pred hhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHH
Q 013609 24 ERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVV 103 (439)
Q Consensus 24 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (439)
.........|.+.++.|.++.+.+.+.+.+.++..++.++.|+++||+|||+.+..+.+...++.....+.+ +.+.+.+
T Consensus 235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 313 (406)
T PRK11551 235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP-SFAGMLL 313 (406)
T ss_pred HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHH
Confidence 333444557788888999999999999999999999999999999999999999888777777777777776 7777888
Q ss_pred HHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC-CchhHHHHhHHHHHHHHHHh
Q 013609 104 ARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG-PNSVFNAEAALGGMWSLLWF 182 (439)
Q Consensus 104 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~ 182 (439)
.-++.|++.+...+...++..|.+|+++|++..|+.+....+|..++|.+++.+.++.+ |...++......++..+..+
T Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 314 AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 88889998887889999999999999999999999999999999999999999988654 55556555555444444444
Q ss_pred hh
Q 013609 183 KY 184 (439)
Q Consensus 183 ~~ 184 (439)
+.
T Consensus 394 ~~ 395 (406)
T PRK11551 394 LL 395 (406)
T ss_pred HH
Confidence 33
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.2e-14 Score=131.42 Aligned_cols=164 Identities=20% Similarity=0.141 Sum_probs=141.3
Q ss_pred hhHHHHHHHHHh-hCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHH
Q 013609 27 GFSIAYTAAADA-AGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVAR 105 (439)
Q Consensus 27 ~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r 105 (439)
......|.+.++ +|.++.+.+++.+...++..++.++.+++.||.++|+.+..+.++.+++.++..+.+ +.+...+..
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 319 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP-MWILAVLCL 319 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc-hHHHHHHHH
Confidence 344556776666 899999999999999999999999999999998888888888888888888888886 888888889
Q ss_pred HHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhc
Q 013609 106 LLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYA 185 (439)
Q Consensus 106 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 185 (439)
++.|++.+...+...+++.|..|+++|++++++.+....+|..+|+.+.|.+.+..|.+..++..+...++..++.....
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999988777888899999999999999999999999999999999999999999999999988887777666666565
Q ss_pred cCCCCC
Q 013609 186 TDPPRS 191 (439)
Q Consensus 186 ~~~~~~ 191 (439)
++.++.
T Consensus 400 ~~~~~~ 405 (417)
T PRK10489 400 GELRRF 405 (417)
T ss_pred cccccc
Confidence 555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-14 Score=132.07 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=132.0
Q ss_pred HHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcc-hHH
Q 013609 21 CYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPN-NVF 99 (439)
Q Consensus 21 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~ 99 (439)
............+.+.++++.++.+.+.+.+.+.++..++.++.|+++||+|||+.+..+.++..++..+..+.++ +..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (377)
T TIGR00890 217 NAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDV 296 (377)
T ss_pred HhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhH
Confidence 3333333444556677889999889999999999999999999999999999999999999998888887777652 223
Q ss_pred HHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHH
Q 013609 100 ILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMW 177 (439)
Q Consensus 100 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~ 177 (439)
.+....++.|++.+...+....++.|.+|+++|++..|+.+....+|..++|.+.+.+.++.||++.|++.+++.++.
T Consensus 297 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 297 LFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 345667888988888888888999999999999999999999999999999999999999999999999888766653
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=129.05 Aligned_cols=156 Identities=12% Similarity=0.047 Sum_probs=127.5
Q ss_pred hhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHH
Q 013609 27 GFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVAR 105 (439)
Q Consensus 27 ~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r 105 (439)
.+....|. +.+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........+ +.+.+++.+
T Consensus 234 ~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 312 (393)
T PRK15011 234 LYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH-SPAILLGLQ 312 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 34445565 4567899999999998888888888999999999999999988877666655555555564 788888899
Q ss_pred HHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhh
Q 013609 106 LLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKY 184 (439)
Q Consensus 106 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 184 (439)
++.+++.+...+....+..|..| ++|+++.++.+....+|..+++.+++.+.+++||+..|++.+++.++..+..++.
T Consensus 313 ~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 313 LLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99988888777778888899987 4699999999999999999999999999998999999998887777655555533
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=129.07 Aligned_cols=158 Identities=19% Similarity=0.212 Sum_probs=134.0
Q ss_pred hhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHH
Q 013609 25 RVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVA 104 (439)
Q Consensus 25 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (439)
........|.+.++.+.+ +.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++..+..+.+ +.+.+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 308 (392)
T PRK12382 232 FAVIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP-TAWVALAG 308 (392)
T ss_pred HhHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc-cHHHHHHH
Confidence 334445555666666654 456667778888899999999999999999999999999888888888886 88888889
Q ss_pred HHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhh
Q 013609 105 RLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKY 184 (439)
Q Consensus 105 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 184 (439)
.++.|++.+...+...+.+.|.+|+|+|+++.++.+....+|..++|.+.+.+.++.||+..|.+.+.+.++..+..++.
T Consensus 309 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 309 AALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988888888999999999999999999999999999999999999999999999999988887766665544
Q ss_pred c
Q 013609 185 A 185 (439)
Q Consensus 185 ~ 185 (439)
.
T Consensus 389 ~ 389 (392)
T PRK12382 389 F 389 (392)
T ss_pred c
Confidence 3
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-13 Score=125.63 Aligned_cols=153 Identities=14% Similarity=0.067 Sum_probs=125.1
Q ss_pred HHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHh-hhcCCcchHHHHHHHHHHHhh
Q 013609 32 YTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCF-WLKLDPNNVFILVVARLLVGV 110 (439)
Q Consensus 32 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~ 110 (439)
.|.+.+++|.|..+.+++.+.+.++..++.++.|+++||+|||+... +..+..++.. +....+ +.+.+.+..++.|+
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~g~ 306 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAAN-SEWHLSVLSIFWGI 306 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHH
Confidence 34455568999999999999999999999999999999999887544 4444444433 334554 78888889999999
Q ss_pred hcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccC
Q 013609 111 SQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATD 187 (439)
Q Consensus 111 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 187 (439)
+.+...+...+.+.|..| ++|++++++.+....+|..+||.++|.+.+++|++..|+..+.+.++..+...+..++
T Consensus 307 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
T PRK03545 307 AIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFRR 382 (390)
T ss_pred HHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHccc
Confidence 988777888888888876 6889999999999999999999999999999999999999998888776666655543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-14 Score=134.45 Aligned_cols=164 Identities=18% Similarity=0.144 Sum_probs=132.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhccccccccccc--CchHHHHH--HHHHHHHHHhh
Q 013609 15 FISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKI--GGRKVLLF--SFVLWSSTCFW 90 (439)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~ 90 (439)
....++...........+|.+.+++|.+..+.+++.+...++..++.++.|+++||. ++|+...+ +.++.+++.++
T Consensus 247 ~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll 326 (455)
T TIGR00892 247 LSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLL 326 (455)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555567777788999999999999999999999999999999983 34443333 33444455556
Q ss_pred hcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhccc-CCchhHHH
Q 013609 91 LKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN-GPNSVFNA 169 (439)
Q Consensus 91 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~wr~~f~~ 169 (439)
+.+.+ +++.+++.+++.|++.+...+...+++.|.+|++++++.+++.+....+|..+||.+++.+.+.. +|++.|++
T Consensus 327 ~~~~~-~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~ 405 (455)
T TIGR00892 327 CALAG-DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYA 405 (455)
T ss_pred HHHhc-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHH
Confidence 66775 88999999999999999999999999999999999999999999999999999999999999877 59999999
Q ss_pred HhHHHHHHHH
Q 013609 170 EAALGGMWSL 179 (439)
Q Consensus 170 ~~~~~~~~~~ 179 (439)
.+++.++..+
T Consensus 406 ~~~~~li~~~ 415 (455)
T TIGR00892 406 SGSIVVSAGL 415 (455)
T ss_pred hhHHHHHHHH
Confidence 8877665443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-13 Score=126.11 Aligned_cols=163 Identities=14% Similarity=0.038 Sum_probs=141.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCC
Q 013609 15 FISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLD 94 (439)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 94 (439)
.+..++.......+....|...+|+|.++.+.|.+.+...++..+..++.+++.||+|+|+.+.++.+...+...+.+++
T Consensus 211 l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T TIGR00902 211 LAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI 290 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444445555556667777778899999999999999999999999999999999999999999999999999999998
Q ss_pred cchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHh-hhhhHHHHHHhhhhhhhhcccCCchhHHHHhHH
Q 013609 95 PNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTT-SGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAAL 173 (439)
Q Consensus 95 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~ 173 (439)
+ |.+.++..+.+.|+..+...+....++.+. |+++|++..++++ ...++|..+++.++|.+.|+.|+ ..|++.+.+
T Consensus 291 ~-~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~ 367 (382)
T TIGR00902 291 E-AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAII 367 (382)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHH
Confidence 6 999999999999999999999999999998 9999999999986 47889999999999999999986 668888877
Q ss_pred HHHHHHH
Q 013609 174 GGMWSLL 180 (439)
Q Consensus 174 ~~~~~~~ 180 (439)
+++..++
T Consensus 368 ~~~~~~~ 374 (382)
T TIGR00902 368 AAAAFFL 374 (382)
T ss_pred HHHHHHH
Confidence 7665444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-13 Score=126.30 Aligned_cols=171 Identities=16% Similarity=0.170 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHH
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLN 315 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 315 (439)
+.++...+..++.+.....+....|.+.++ +|.|+.+.+++.+...++..+++++.|++.||+++|+ .+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~----------~~ 91 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARY----------FM 91 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCch----------hH
Confidence 344455555566666666777888888877 8999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccC-CChhhHHHHHHHHHhhhhHHHHHHHHHHhh
Q 013609 316 TVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIA-PRYAGIVMGISNTAGTLAGIVGVDMTGKLL 394 (439)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 394 (439)
..+.++.+++.+.....++.+......++.....+...+.......+.. +++|++++|+.+...++|..++|.+.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 92 GIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877777666554443333222222333344444545544 478999999999999999999999999999
Q ss_pred ccccccccCCCCcccchhHHHHHHHHHHHHHHHH
Q 013609 395 EAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVF 428 (439)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (439)
+.. +|+..|.+.+++.++..+..
T Consensus 172 ~~~-----------gw~~~f~~~~i~~~~~~~~~ 194 (434)
T PRK11663 172 LHY-----------GWRYGMMIAGIIAIVVGLFL 194 (434)
T ss_pred Hcc-----------cHHHHHHHHHHHHHHHHHHH
Confidence 887 89999988877665544333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.5e-13 Score=123.61 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHH
Q 013609 27 GFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARL 106 (439)
Q Consensus 27 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 106 (439)
.....+|.+.++.|.++++.++..+...++..+++++.|++.||+|+|+++..+..+..++..... + + ........
T Consensus 218 ~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~-~~~~~~~~ 293 (381)
T PRK03633 218 SLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-Q-AAMAPALF 293 (381)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-h-HHHHHHHH
Confidence 334456777778899999999999999999999999999999999999999988888777665443 2 2 23345677
Q ss_pred HHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHh
Q 013609 107 LVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182 (439)
Q Consensus 107 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 182 (439)
+.|++.....|...+.+.|..|+++++...+......++|..+||.++|.+.|+.+|++.|.+.+.+.++..+..+
T Consensus 294 l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 294 ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 8888777788999999999999888888888888899999999999999999999999999998888776554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=129.62 Aligned_cols=171 Identities=15% Similarity=0.140 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH-HHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHh
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAA-ADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCF 89 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 89 (439)
+..+++..++............|.+ .+++|.|..+.++..+...++..++.+++|+++||+|||+.+.....+..++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~ 339 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT 339 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 3444555555555555556667764 567899999999999999999999999999999999999887665444433322
Q ss_pred --hhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhH-HHHHHhhhhhhhhc-------
Q 013609 90 --WLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYL-GAAMGMLFLPSLVK------- 159 (439)
Q Consensus 90 --~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~------- 159 (439)
.....+ +.+.+.+.+++.|++.............|.+|+++||++.|+.+....+ |..++|.+.|.+.+
T Consensus 340 ~~~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~ 418 (467)
T PRK09556 340 LGVYQHAT-SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP 418 (467)
T ss_pred HHHHHhcC-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence 223343 6667778888888654433333346677999999999999999998886 77999999999999
Q ss_pred -----ccCCchhHHHHhHHHHHHHHHHh
Q 013609 160 -----YNGPNSVFNAEAALGGMWSLLWF 182 (439)
Q Consensus 160 -----~~~wr~~f~~~~~~~~~~~~~~~ 182 (439)
..+|+..|++.++..++..+..+
T Consensus 419 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 419 IFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHH
Confidence 57899999988777666544443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-13 Score=129.04 Aligned_cols=180 Identities=12% Similarity=0.093 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHh
Q 013609 10 IVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCF 89 (439)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 89 (439)
.+....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 364 (481)
T TIGR00879 285 LFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF 364 (481)
T ss_pred HHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33344444444444445556667888889999998889999999999999999999999999999999998888777766
Q ss_pred hhc---CCc-c------hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc
Q 013609 90 WLK---LDP-N------NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK 159 (439)
Q Consensus 90 ~~~---~~~-~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 159 (439)
+.+ ... + +...+....++.+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 365 VLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred HHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 111 0 222233333333332233456777788999999999999999999999999999999999999
Q ss_pred ccCCchhHHHHhHHHHHHHHHHhhhccCCC
Q 013609 160 YNGPNSVFNAEAALGGMWSLLWFKYATDPP 189 (439)
Q Consensus 160 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
+.+|++.|++.++++++..+...++.||++
T Consensus 445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred hcCccceehhHHHHHHHHHHHHheecccCC
Confidence 899999999999888887777766666544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=124.08 Aligned_cols=176 Identities=11% Similarity=0.070 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCcccccchhhhhhHHHHHHHHHHHHHHHHH-hhhccccchhhhhH
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELG--LQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH-LITKRILSVTRTRK 312 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~ 312 (439)
+.++.+....++..+++++...++|.|+++. +|++..+++.+.+...+...++.+++|+++|| +|||+
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~--------- 80 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK--------- 80 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH---------
Confidence 3456666777777899999999999999987 89999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccC-CC---hhhHHHHHHHHHhhhhHHHHHH
Q 013609 313 FLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIA-PR---YAGIVMGISNTAGTLAGIVGVD 388 (439)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~g~~~~~~~~g~~i~~~ 388 (439)
.+..+.++.+++.+++...++.........+.....+...+.......+.. ++ +|+++.++.+...++|..++|.
T Consensus 81 -~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~ 159 (475)
T TIGR00924 81 -TMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL 159 (475)
T ss_pred -HHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHH
Confidence 888888888888888777655443333222222222333344444444443 33 4888999999999999999999
Q ss_pred HHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 389 MTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 389 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
+.+.+.+.. +|+..|.+.++..+++.+.+...+
T Consensus 160 l~g~l~~~~-----------g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 160 LAGVIAENY-----------GYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHhc-----------ChHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999887 799999988877666655554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-12 Score=121.56 Aligned_cols=175 Identities=15% Similarity=0.146 Sum_probs=132.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHh-hhccccchhhhhHH
Q 013609 235 NLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHL-ITKRILSVTRTRKF 313 (439)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~ 313 (439)
.+.++..+...+...++++++..++|.|+++.+|+++.+++.+.........++.+++|+++||+ |||+
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr---------- 77 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM---------- 77 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH----------
Confidence 34566777777888889999999999999988999999999999999999999999999999999 9998
Q ss_pred HHHHHHHHHHHHHhhhcccCC-hhHHHH-HHHHHHHhhhcccccccccccccCC-C--hhhHHHHHHHHHhhhhHHHHHH
Q 013609 314 LNTVGFMVASIALMALPIFRS-SNGAIF-CSSIALGFLALGRAGFAVNHMDIAP-R--YAGIVMGISNTAGTLAGIVGVD 388 (439)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~g~~~~~~~~g~~i~~~ 388 (439)
.+..+.++..++.+++...+. ...... ..++..+. +...+.......|..| + +|.++.++.....++|+.++|.
T Consensus 78 ~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~-G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~ 156 (493)
T PRK15462 78 AVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGY-GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI 156 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence 778888888777665543321 121221 22222222 2333444455566554 3 6999999999999999999999
Q ss_pred HHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 389 MTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 389 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
+.+++.+.. +|+..|.+.++..+++.+.+...
T Consensus 157 l~g~L~~~~-----------Gw~~~F~iaaigm~l~li~~~~~ 188 (493)
T PRK15462 157 ACGYAQEEY-----------SWAMGFGLAAVGMIAGLVIFLCG 188 (493)
T ss_pred HHHHHHhhh-----------ChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999887 89999998877666666655543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=120.85 Aligned_cols=171 Identities=13% Similarity=0.143 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHH
Q 013609 239 WAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVG 318 (439)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 318 (439)
+......++...+.+....++|.|++++.|.|+.+.|+..+...+...+.+++.|+++||+++|+ .+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~----------~l~~~ 82 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKP----------MIVTG 82 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchH----------HHHHH
Confidence 44556777888888888999999998889999999999999999999999999999999999998 88888
Q ss_pred HHHHHHHHhhhcccCChhHHHHHHHHHHHhhhccccccccccc-ccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 319 FMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHM-DIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
..+.++..+.....++.+.......+.....+...+....... ..++|+|+++.|+.+...++|..++|.+.+.+. ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~ 161 (400)
T PRK11646 83 MLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY 161 (400)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 8888888887777666554433333222222223333333344 456689999999999999999999999999998 44
Q ss_pred cccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 398 KTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
+|+..|++.++..++..++....
T Consensus 162 -----------g~~~~f~~~~~~~~~~~i~~~~~ 184 (400)
T PRK11646 162 -----------DFRLVCATGAVLFVLAAAFNAWL 184 (400)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999998887776665544333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=121.70 Aligned_cols=173 Identities=15% Similarity=0.077 Sum_probs=133.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcch
Q 013609 18 TCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNN 97 (439)
Q Consensus 18 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 97 (439)
.++............|.+.+++|.+..+.+...+.+.++..++.+..|++.||+|||+.+..+..+..++..+....+.+
T Consensus 214 ~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 293 (393)
T PRK09705 214 FGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ 293 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch
Confidence 33334444455566777777889999999999999999999999999999999999999998888777776655433323
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHHhhhccC-CcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC-CchhHHHHhHHHH
Q 013609 98 VFILVVARLLVGVSQGFIFPSIHTVLAQWVP-PHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG-PNSVFNAEAALGG 175 (439)
Q Consensus 98 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~ 175 (439)
...+. -.+.|++.+...+.......+..+ +++|++..+..+....++..++|.+.+++.+..| |+..|.+.+..++
T Consensus 294 ~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~ 371 (393)
T PRK09705 294 LPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVV 371 (393)
T ss_pred HHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 32222 246788888888888777777775 5789999999999999999999999999999776 7888888777777
Q ss_pred HHHHHHhhhccCCCCCC
Q 013609 176 MWSLLWFKYATDPPRSE 192 (439)
Q Consensus 176 ~~~~~~~~~~~~~~~~~ 192 (439)
+.......+.||+++++
T Consensus 372 ~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 372 GLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHhccccccch
Confidence 66666566666655543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.5e-13 Score=123.46 Aligned_cols=151 Identities=13% Similarity=0.087 Sum_probs=126.8
Q ss_pred HHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH
Q 013609 30 IAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLV 108 (439)
Q Consensus 30 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 108 (439)
...|. +.+++|.++.+.+++.+.......++.++.|++.||+|||+.+.++.++..+......+.+ +.+.+.+.+.+.
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 298 (375)
T TIGR00899 220 INMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN-SLWALLMLQLLN 298 (375)
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33444 4577899999999988888777888899999999999999999888777666665555665 788888899999
Q ss_pred hhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHh
Q 013609 109 GVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182 (439)
Q Consensus 109 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 182 (439)
|++.+...+....++.|..|+ +|++++++.+....+|..++|.+++.+.+..||+..|++.++..++..+...
T Consensus 299 g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 299 AIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999888888888999998875 5679999999999999999999999999999999999998887776655544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.3e-12 Score=121.06 Aligned_cols=173 Identities=20% Similarity=0.269 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHH
Q 013609 246 FTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIA 325 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
++.....+......|.+.+ .+|++..+.++..+...++..++.++.|+++||+|+|+ .+..+.++..++
T Consensus 46 ~~~~~~~~~~~~~~~~l~~-~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~----------~~~~~~~~~~~~ 114 (476)
T PLN00028 46 FTCFVSTFAAAPLLPIIRD-NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRY----------GSAFLLMLTAPA 114 (476)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH----------HHHHHHHHHHHH
Confidence 3333334444455555554 49999999999888888999999999999999999998 777777777777
Q ss_pred HhhhcccCChhHHHHH-HHHHHHhhhccccccccccccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccC
Q 013609 326 LMALPIFRSSNGAIFC-SSIALGFLALGRAGFAVNHMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSD 403 (439)
Q Consensus 326 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~ 403 (439)
.+.....++....... ++.+++... ..+. .....+. ++++|+.+.|+.+...++|+.+++.+.+.+.+.....+
T Consensus 115 ~~~~~~~~s~~~l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~-- 190 (476)
T PLN00028 115 VFCMSLVSSATGFIAVRFFIGFSLAT-FVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG-- 190 (476)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHh-hHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 7766666655544332 222333222 2222 2233444 45799999999999888999888877766543211000
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 404 LSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
.....+|+.+|++.+++.++..+..+++.+
T Consensus 191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 191 APSFTAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 001137999999988888776666655543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.7e-13 Score=118.44 Aligned_cols=180 Identities=16% Similarity=0.185 Sum_probs=146.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHH
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLN 315 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 315 (439)
+.+....+.+...++.-..+..-.|...++ .++|..|.|.+.+...+..-++..+.|.++||.+.|+ .+
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~----------fm 97 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY----------FM 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce----------ee
Confidence 345555666666666666677777777766 7899999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHH--HH
Q 013609 316 TVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMT--GK 392 (439)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~--g~ 392 (439)
..+++++++..+++.+.++.....++..+-..+-+...|........ .++++||+..++-|+..++|+.+.|++. +.
T Consensus 98 ~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~ 177 (448)
T COG2271 98 AFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF 177 (448)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH
Confidence 99999999999999998866666666666555556665555554444 5558999999999999999999999999 88
Q ss_pred hhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 013609 393 LLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGERI 437 (439)
Q Consensus 393 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (439)
+.++. +|+..|++-++++++..++.+...|++.+
T Consensus 178 ~~~~~-----------~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 178 FAFHG-----------GWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHhcc-----------chhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 88887 89999999999988777777766665443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-12 Score=121.56 Aligned_cols=177 Identities=15% Similarity=0.111 Sum_probs=128.7
Q ss_pred Hhhhcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHH-hhhccccch
Q 013609 230 KRIVVNLP-VWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH-LITKRILSV 307 (439)
Q Consensus 230 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~ 307 (439)
.+.+++|+ ++..+...++..++++.+..+++.|+++.+|++..+++..............+++|+++|| +|+|+
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~---- 89 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR---- 89 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH----
Confidence 35557764 8888888899999999999999999998899999888777766655555556789999999 59998
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcccCCh-hHHHHH-HHHHHHhhhcccccccccccccCC-C--hhhHHHHHHHHHhhhh
Q 013609 308 TRTRKFLNTVGFMVASIALMALPIFRSS-NGAIFC-SSIALGFLALGRAGFAVNHMDIAP-R--YAGIVMGISNTAGTLA 382 (439)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~g~~~~~~~~g 382 (439)
.+..+.++..++...+...++. ...... .+.+.+. +...+.......+..| + ++..+.++.+...++|
T Consensus 90 ------~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~-g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG 162 (500)
T PRK09584 90 ------VIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGN-GLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIG 162 (500)
T ss_pred ------HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhh-hcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHH
Confidence 7888888888777776665332 222222 2223322 3333444444555443 2 3556888899999999
Q ss_pred HHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHH
Q 013609 383 GIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVF 428 (439)
Q Consensus 383 ~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (439)
..++|.+.|++.+.. +|+..|.+.++..+++.+.+
T Consensus 163 ~~~gp~i~g~l~~~~-----------g~~~~F~i~~i~~~i~~i~~ 197 (500)
T PRK09584 163 SFFSMLATPWLAAKY-----------GWSVAFALSVVGMLITVVNF 197 (500)
T ss_pred HHHHHHHHHHHHHhh-----------CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 89999998876665555443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.8e-13 Score=123.36 Aligned_cols=170 Identities=14% Similarity=0.129 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHH-HhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhh
Q 013609 13 LTFISTCVCYIERVGFSIAYTAAA-DAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWL 91 (439)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 91 (439)
...+..++.......+....|.+. +++|.|..+.+.+.+.+.++..++.++.|+++||++||+.+.....+..+...+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 288 (394)
T PRK03699 209 FLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF 288 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 334444444444445556677765 6689999999999999999999999999999999999999998887777777666
Q ss_pred cCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHh
Q 013609 92 KLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEA 171 (439)
Q Consensus 92 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~ 171 (439)
...+ +.+.+.+..++.|++.+...+...+...|..| +++++..+.......+|..++|.+.+.+.+..||+..+++.+
T Consensus 289 ~~~~-~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~ 366 (394)
T PRK03699 289 VNTD-DPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTAN 366 (394)
T ss_pred HHcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhH
Confidence 6675 77777777888999888788888888888775 556788899989999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhh
Q 013609 172 ALGGMWSLLWFKY 184 (439)
Q Consensus 172 ~~~~~~~~~~~~~ 184 (439)
++.++..+.+...
T Consensus 367 ~~~~~~~~~~~~~ 379 (394)
T PRK03699 367 GLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 8877765544433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-12 Score=121.49 Aligned_cols=176 Identities=15% Similarity=0.174 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHH
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLN 315 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 315 (439)
+.++...+..++.......+..++|.+.++ +|.++.+.++..+...++..++.++.|+++||++||+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~----------~~ 78 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRN----------IF 78 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH----------HH
Confidence 456777788888888888888999999987 8999999999888888999999999999999999998 66
Q ss_pred HHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhh
Q 013609 316 TVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLL 394 (439)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 394 (439)
..+..+..++.+.....++.......-.+.....+...+.......+ .++++|+++.|+.+...++|..++|.+.|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 79 FTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 66666666666655555554443333332222222223334444444 45578999999999999999999999999999
Q ss_pred ccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 395 EAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
+.. +|+..|.+......++.+......+
T Consensus 159 ~~~-----------gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 159 EYA-----------SWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred hhc-----------cHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 987 8999999887777666665555433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=126.30 Aligned_cols=164 Identities=10% Similarity=0.060 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCc--chH-HHHHH
Q 013609 27 GFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDP--NNV-FILVV 103 (439)
Q Consensus 27 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~-~~l~~ 103 (439)
......|.+.++.|.+..+..+......+...++.++.|+++||+|||++++.+.++.+++.++.+... +.. .....
T Consensus 289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 368 (479)
T PRK10077 289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 368 (479)
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 334456888888998887777777788888999999999999999999999999998888876654321 111 12223
Q ss_pred HHHHHhhhccc-chhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhh------hcccCCchhHHHHhHHHHH
Q 013609 104 ARLLVGVSQGF-IFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSL------VKYNGPNSVFNAEAALGGM 176 (439)
Q Consensus 104 ~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l------~~~~~wr~~f~~~~~~~~~ 176 (439)
+-++.+.+.+. ..|....+++|.+|+++|++++|+......+|..+++.+.+.+ .+..+|++.|++.++++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 448 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence 33444444433 3477889999999999999999999999999998886555543 4578899999998888777
Q ss_pred HHHHHhhhccCCCC
Q 013609 177 WSLLWFKYATDPPR 190 (439)
Q Consensus 177 ~~~~~~~~~~~~~~ 190 (439)
..+..+++.||+++
T Consensus 449 ~~~~~~~~~~e~~~ 462 (479)
T PRK10077 449 AALFMWKFVPETKG 462 (479)
T ss_pred HHHHHHhccccCCC
Confidence 77766666666543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-11 Score=116.92 Aligned_cols=154 Identities=13% Similarity=0.064 Sum_probs=121.2
Q ss_pred HHHHHHHhhCCCccchhhhhh-hhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhh---hcCCcchHHHHHHHHH
Q 013609 31 AYTAAADAAGVNQSSKGTILS-TFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFW---LKLDPNNVFILVVARL 106 (439)
Q Consensus 31 ~~~~i~~~~~~s~~~~g~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~l~~~r~ 106 (439)
..|.+.+++|.+.++.++... ...++..++.++.|+++||+|+|+.+.++.++.++.... .+...++.+.+...-+
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~ 324 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF 324 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 334456779999999999974 666899999999999999999999887766655544332 2333225555555666
Q ss_pred HHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhh
Q 013609 107 LVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKY 184 (439)
Q Consensus 107 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~ 184 (439)
++.++.+...+...++..+..+++.+++..++.+...++|..+++++.|.+.+..||+..|.+.++.+++..+...+.
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 766666666677788899999999999999999999999999999999999999999999999888888766666544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-11 Score=106.62 Aligned_cols=346 Identities=11% Similarity=0.040 Sum_probs=219.3
Q ss_pred HHHHHHHHh-hCCCccchh-hhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 013609 30 IAYTAAADA-AGVNQSSKG-TILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLL 107 (439)
Q Consensus 30 ~~~~~i~~~-~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 107 (439)
...|.+.+. .|.+++|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+.-+.+ +...+-+..+.
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~-sv~~mq~~q~~ 103 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT-SVLAMQLMQFF 103 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC-cHHHHHHHHHH
Confidence 344445544 788887763 455566667778888999999999999999999999988888888886 99999999999
Q ss_pred HhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc--cCCchhHHHHhHHHHHHHHHHhhhc
Q 013609 108 VGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY--NGPNSVFNAEAALGGMWSLLWFKYA 185 (439)
Q Consensus 108 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~~wr~~f~~~~~~~~~~~~~~~~~~ 185 (439)
-|++.+ ...+.++++-...|+++-.++.+...+..-+|..++..+|..+... .+.+...++......+.. ++.+++
T Consensus 104 yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~-~~~~fL 181 (412)
T PF01770_consen 104 YGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL-LIALFL 181 (412)
T ss_pred HHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHHc
Confidence 999988 4688889998888999999999999999999999999999888763 334444444443333333 333455
Q ss_pred cCCCCCCC--CCC-CcccccCccCc---ccchhhhhc--cccccc-------cccCchHHhhhcchhHHHHHHHHHHHHH
Q 013609 186 TDPPRSEH--PKA-SAAGFGESLLP---MRDQKVKVD--NGGSAM-------KAAKIPWKRIVVNLPVWAIVVNNFTFHY 250 (439)
Q Consensus 186 ~~~~~~~~--~~~-~~~~~~~~~~~---~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (439)
|..++... ++. +.++..+.+.+ ...+...+. ..+... +....++++..++|.++.-.+-..+...
T Consensus 182 P~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atc 261 (412)
T PF01770_consen 182 PMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATC 261 (412)
T ss_pred CCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 55554321 111 10000000000 000000000 000000 1112344566678888888888888888
Q ss_pred HHHHHHHHHHHHHHHh--hCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhh
Q 013609 251 ALYVLMNWLPTYFELG--LQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMA 328 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (439)
+++.+.+|.-...++. .+-+..-.|.+-+...+.+.++.+..|++..+..+.. ...+.....+.+..+++
T Consensus 262 gy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~--------~l~l~~~S~l~a~~L~l 333 (412)
T PF01770_consen 262 GYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWG--------ELALGVFSLLQAGLLFL 333 (412)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHH--------HHHHHHHHHHHHHHHHH
Confidence 8888887777766664 1222233466666666777777777777733333322 23445555666677777
Q ss_pred hcccCChhHHHHHHHHHHHhhhcccc-cccccccccCCChhhHHHHHHHHHhhhhHHHH
Q 013609 329 LPIFRSSNGAIFCSSIALGFLALGRA-GFAVNHMDIAPRYAGIVMGISNTAGTLAGIVG 386 (439)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~ 386 (439)
+...++.+......++..+......+ ...-...+...|.-|...|+++.+..+-..+-
T Consensus 334 m~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtil 392 (412)
T PF01770_consen 334 MSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTIL 392 (412)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHhe
Confidence 77777777766665555444433322 22334445566778888888777655544443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-12 Score=117.89 Aligned_cols=170 Identities=14% Similarity=0.129 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHH
Q 013609 240 AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGF 319 (439)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 319 (439)
.+....++...+.......+|.|..+ .+.++.+.+++.+...++..++.++.|+++||+|||+ .+..+.
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~----------~~~~~~ 71 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKK----------VMIGAD 71 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhH----------HHHHHH
Confidence 34556677777777788888988887 7899999999999999999999999999999999999 777776
Q ss_pred HHHHHHHhhhcccC-----ChhHHHHHHHHHHHhhhcccccccccccccC-CChhhHHHHHHHHHhhhhHHHHHHHHHHh
Q 013609 320 MVASIALMALPIFR-----SSNGAIFCSSIALGFLALGRAGFAVNHMDIA-PRYAGIVMGISNTAGTLAGIVGVDMTGKL 393 (439)
Q Consensus 320 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 393 (439)
.+..++.......+ +.+.......+.....+...+.......|.. +++|+++.|+.+....+|..++|.+.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 151 (365)
T TIGR00900 72 LIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLM 151 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 66665555544433 4444333333333333333444455555554 47999999999999999999999999999
Q ss_pred hccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 394 LEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
.+.. +|+..+++.++..+++.+.....
T Consensus 152 ~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 152 YATL-----------GIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred HHHh-----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 9887 89999988877776665555444
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=122.42 Aligned_cols=162 Identities=16% Similarity=0.101 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHH-HhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHH--hh
Q 013609 14 TFISTCVCYIERVGFSIAYTAAA-DAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTC--FW 90 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~ 90 (439)
.....+.............|.+. +++|.++.+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. ..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 303 (394)
T TIGR00883 224 GLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLL 303 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555566677765 6789999999999999999999999999999999999998776554443322 22
Q ss_pred hcC-CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHH-hhhhhHHHHHHhhhhhhhhcccC-CchhH
Q 013609 91 LKL-DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLT-TSGMYLGAAMGMLFLPSLVKYNG-PNSVF 167 (439)
Q Consensus 91 ~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~~-wr~~f 167 (439)
..+ ..++.+.+.....+.|++.+...+...+++.|.+|+++|+++.++. +....+|..++|.+++.+.++.| |+..+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~ 383 (394)
T TIGR00883 304 MALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIG 383 (394)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHH
Confidence 222 1126777778889999998888999999999999999999999984 55677899999999999999888 88877
Q ss_pred HHHhHHHH
Q 013609 168 NAEAALGG 175 (439)
Q Consensus 168 ~~~~~~~~ 175 (439)
+......+
T Consensus 384 ~~~~~~~l 391 (394)
T TIGR00883 384 YYLAALAL 391 (394)
T ss_pred HHHHHHHH
Confidence 76655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.3e-12 Score=118.21 Aligned_cols=171 Identities=13% Similarity=0.076 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHH
Q 013609 241 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFM 320 (439)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 320 (439)
.....+.............|.+.++ +|.|+.+.++..+...++..++.++.|++.||++||+ .+..+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~----------~~~~~~~ 78 (385)
T TIGR00710 10 LGCLSILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP----------VLLLGLF 78 (385)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH----------HHHHHHH
Confidence 3333344445555555666766655 8999999999999999999999999999999999998 7777888
Q ss_pred HHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccc
Q 013609 321 VASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKT 399 (439)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~ 399 (439)
+..++.+.....++.+......++.....+...+.......| .++++|+++.++.+....+|..++|.+.+.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-- 156 (385)
T TIGR00710 79 IFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-- 156 (385)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 888777777766665544443333222223333344444455 45578999999999999999999999999998877
Q ss_pred cccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 400 TYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
+|+..+.+.++..++..+......+
T Consensus 157 ---------~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 157 ---------SWHAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8999998888777766665554433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-12 Score=116.69 Aligned_cols=166 Identities=19% Similarity=0.284 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHH
Q 013609 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMV 321 (439)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 321 (439)
.+..++...........+|.++.+.+|.++.+.+++.+...++..++.++.|+++||+|+|+ .+..+.++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~----------~l~~~~~~ 71 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR----------VLIIGLLL 71 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH----------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee----------eEeehhhh
Confidence 34556667777777788886666779999999999999999999999999999999999999 88888888
Q ss_pred HHHHHhhhcccCChhHHHHHHHHHHHhhhccccccccccccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccc
Q 013609 322 ASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTT 400 (439)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~ 400 (439)
.+++.+...+.++.+......++.....+...+.......+. ++|+|+++.++.+...++|..++|.+.+.+.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~--- 148 (352)
T PF07690_consen 72 FALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF--- 148 (352)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC---
T ss_pred hhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc---
Confidence 888744444434544333333332222234444555555554 4579999999999999999999999999999877
Q ss_pred ccCCCCcccchhHHHHHHHHHHHHHHHH
Q 013609 401 YSDLSSPESWRAVFFIPGLLCILSSFVF 428 (439)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (439)
+|+..|++.+++.+++.++.
T Consensus 149 --------~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 149 --------GWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp --------HHCCHHHHHHHHHHHHHHHH
T ss_pred --------ccccccccccchhhhhhhhH
Confidence 89999999999988887753
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-12 Score=118.87 Aligned_cols=166 Identities=17% Similarity=0.143 Sum_probs=127.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHH-HHHHHHHHHHhhhc-
Q 013609 15 FISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLL-FSFVLWSSTCFWLK- 92 (439)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~- 92 (439)
.+..++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.....
T Consensus 228 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~ 307 (402)
T TIGR00897 228 GMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY 307 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555566778888889999999999999999999999999999999999988764 33333333332222
Q ss_pred ----CCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHH
Q 013609 93 ----LDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFN 168 (439)
Q Consensus 93 ----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~ 168 (439)
..+ +.+...+..++.|++.+...+ ....+.|.. +++|++++|+.+....+|..++|.+++.+.+..||+..++
T Consensus 308 ~~~~~~~-~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~ 384 (402)
T TIGR00897 308 IPQHFGH-SFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVW 384 (402)
T ss_pred HHHccCC-cHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 233 677777888899998876654 455667765 5689999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhh
Q 013609 169 AEAALGGMWSLLWFK 183 (439)
Q Consensus 169 ~~~~~~~~~~~~~~~ 183 (439)
+.+++.++..++..+
T Consensus 385 ~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 385 IFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998887776655544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=114.70 Aligned_cols=175 Identities=13% Similarity=0.143 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHH
Q 013609 237 PVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNT 316 (439)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 316 (439)
.++..++..+...........+.|.++++.+|.|+.+.+++.+...++..++.++.|+++||+|+|+ .+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~----------~~~ 71 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY----------TTT 71 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH----------HHH
Confidence 4566777777778888888899998787789999999999999999999999999999999999999 788
Q ss_pred HHHHHHHHHHhhhcccC-ChhHHHHHHHH-HHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHh
Q 013609 317 VGFMVASIALMALPIFR-SSNGAIFCSSI-ALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKL 393 (439)
Q Consensus 317 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 393 (439)
.+.++..++.+.....+ +.+.....-++ +.+ .+...+ ......+ .++++|+++.++.....++|..+++.+.+.+
T Consensus 72 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 72 LSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88888888877777766 55444333222 222 222222 2333444 4558999999999988889988888888777
Q ss_pred hccccccccCCCCcccchhHH-HHHHHHHHHH
Q 013609 394 LEAAKTTYSDLSSPESWRAVF-FIPGLLCILS 424 (439)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 424 (439)
.+...... +.+...+|+..+ ...+++..+.
T Consensus 150 ~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~ 180 (366)
T TIGR00886 150 IGSLIFGA-GLPAHLAWGWAFVIVPAGILLLP 180 (366)
T ss_pred HHHHHhcc-cccccccccchhHHHHHHHHHHH
Confidence 65321110 000113688888 4334444333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.7e-12 Score=116.47 Aligned_cols=174 Identities=13% Similarity=0.071 Sum_probs=134.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHH
Q 013609 235 NLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFL 314 (439)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 314 (439)
++.++......+............+|.+.++ +|.+..+.++..+...++..+++++.|++.||+++|+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~----------~ 70 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKH----------I 70 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHH----------H
Confidence 3556677777777778878888888887766 8999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccC-CChhhHHHHHHHHHhhhhHHHHHHHHHHh
Q 013609 315 NTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIA-PRYAGIVMGISNTAGTLAGIVGVDMTGKL 393 (439)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 393 (439)
+..+..+.+++.++....++.+.....-.+.....+...+.......+.. +++|+++.+.......++..++|.+.+.+
T Consensus 71 ~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 150 (382)
T PRK10091 71 LLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL 150 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 88888888888888887777665554433322222222233334445544 46899999999999999999999999998
Q ss_pred hccccccccCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 013609 394 LEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLL 430 (439)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (439)
.+.. +|+..|.+.++..++..+....
T Consensus 151 ~~~~-----------gwr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 151 SQEF-----------SWRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred hhhc-----------cHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 8999999988877665554433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=114.91 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhh
Q 013609 249 HYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMA 328 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (439)
....+.....+|.+.++ +|.++.+.+...+...++..+++++.|++.||+|||+ .+..+.++.+++.+.
T Consensus 33 ~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~----------~~~~~~~~~~~~~~~ 101 (394)
T PRK10213 33 IIVEFLPVSLLTPMAQD-LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY----------VVILFAVLLTLSCLL 101 (394)
T ss_pred HHHHHHHHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH----------HHHHHHHHHHHHHHH
Confidence 33334445567777665 8999999999999999999999999999999999999 888888888887777
Q ss_pred hcccCChhHHHHHHHHHHHhhhccccccccccccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCc
Q 013609 329 LPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSP 407 (439)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~ 407 (439)
....++.+..+..-.+.....+...+.......+. ++|+|+++.++.....+++..++|.+.+.+.+..
T Consensus 102 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~---------- 171 (394)
T PRK10213 102 VSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI---------- 171 (394)
T ss_pred HHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------
Confidence 77766655555543333323233334444444454 4588999999999999999999999999999887
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 013609 408 ESWRAVFFIPGLLCILSSFVFL 429 (439)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~ 429 (439)
+|+..|++.+++.++..+...
T Consensus 172 -gw~~~f~~~~~l~~~~~l~~~ 192 (394)
T PRK10213 172 -GWRNVFNAAAVMGVLCIFWII 192 (394)
T ss_pred -CHHHHHHHHHHHHHHHHHHHH
Confidence 899999988776666554443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.9e-12 Score=118.73 Aligned_cols=155 Identities=20% Similarity=0.244 Sum_probs=138.5
Q ss_pred hhhHHHHHHHH-HhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHH
Q 013609 26 VGFSIAYTAAA-DAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVA 104 (439)
Q Consensus 26 ~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (439)
..+...+|.+. +++|.++...|++.+++.+|..++.+..+++.+|+++++.+..+.+..+++.+..++++ +.+..++.
T Consensus 235 ~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~-~~~~~~~~ 313 (524)
T PF05977_consen 235 SAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP-SFWLALIA 313 (524)
T ss_pred hHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch-HHHHHHHH
Confidence 34445677765 56899999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHH
Q 013609 105 RLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLW 181 (439)
Q Consensus 105 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~ 181 (439)
-++.|++.........+.+.+..|++.|||.++++.+....+..+|..+.|.+.+..|-+..+.+.++..++..++.
T Consensus 314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999999888776555544443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=117.01 Aligned_cols=174 Identities=18% Similarity=0.209 Sum_probs=131.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHH-hhhccccchhhhhHHH
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH-LITKRILSVTRTRKFL 314 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~ 314 (439)
|.++..+...+.-.+++++...+++.|+++.+|++..++.++.........+..+++|+++|| +|||+ .
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~----------~ 83 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR----------T 83 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHH----------H
Confidence 456777777888889999999999999999999999999888888887788888899999999 99999 8
Q ss_pred HHHHHHHHHHHHhhhcccCChhHHH-H-HHHHHHHhhhcccccccccccc-cCCC--hhhHHHHHHHHHhhhhHHHHHHH
Q 013609 315 NTVGFMVASIALMALPIFRSSNGAI-F-CSSIALGFLALGRAGFAVNHMD-IAPR--YAGIVMGISNTAGTLAGIVGVDM 389 (439)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~g~~~~~~~~g~~i~~~~ 389 (439)
+..+.++..++.+......+....+ . ..+.+.+. +...+.......+ .+++ +|+.+.++.....++|..++|.+
T Consensus 84 ~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~-g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l 162 (489)
T PRK10207 84 IVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGN-GLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSL 162 (489)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcc-ccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHH
Confidence 8888888888877776654433222 2 22222222 3333444445555 4444 45789999999999999999999
Q ss_pred HHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 390 TGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 390 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
.|++.++. +|+..|++.++..+++.+.+...
T Consensus 163 ~g~l~~~~-----------gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 163 APVIADKF-----------GYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHHHhh-----------ChHHHHHHHHHHHHHHHHHHHHc
Confidence 99999987 89999988766555555444443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-11 Score=117.43 Aligned_cols=174 Identities=20% Similarity=0.137 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHH
Q 013609 238 VWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTV 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 317 (439)
+..+++..+....-......-+|.+.++ +|.++.+.++..+.+.++.....+..|+++||+|||+ .+..
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~----------~l~~ 76 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKR----------LLML 76 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----------HHHH
Confidence 3455566666666677777888988776 8999999999999999999999999999999999999 8888
Q ss_pred HHHHHHHHHhhhcccCChhHHHHHH-HHHHHhhhcccccccccccccC-CChhhHHHHHHHHHhhhhHHHHHHHHHHhhc
Q 013609 318 GFMVASIALMALPIFRSSNGAIFCS-SIALGFLALGRAGFAVNHMDIA-PRYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395 (439)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 395 (439)
+..+..++.+.....++.+..+..- +.+.+.....+........+.+ +++|+++.|+......+|..++|.+.+.+.+
T Consensus 77 ~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 77 GGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888888777766655543 3344333333223333445554 4799999999999999999999999999999
Q ss_pred cccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 396 AAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
.. +|++.|++...+.++..++.....+
T Consensus 157 ~~-----------gwr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 157 HF-----------YWGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred cC-----------ChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 87 8999999987777766665555433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=113.68 Aligned_cols=162 Identities=14% Similarity=0.054 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhh
Q 013609 249 HYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMA 328 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (439)
...+..+...+|.+.+| +|.|+.+.+++.+...++..++++..|+++||+|||+ +..........+...
T Consensus 4 ~~~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~----------~~~~~~~~~~~~~~~ 72 (368)
T TIGR00903 4 QAIWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW----------FLFGSLATFAAAAGR 72 (368)
T ss_pred hHHHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----------HHHHHHHHHHHHHHH
Confidence 34455666777777776 8999999999999999999999999999999999877 544444444333322
Q ss_pred hcccCChhHHHHH-HHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCc
Q 013609 329 LPIFRSSNGAIFC-SSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSP 407 (439)
Q Consensus 329 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~ 407 (439)
....++....+.. ++.+.+.. ...+......+..++|+|+++.++.+....+|..+++.+.+.+.+..
T Consensus 73 ~~~~~~~~~l~~~R~l~G~g~~-~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~---------- 141 (368)
T TIGR00903 73 LLDPFNYEWLLACQLLAALGQP-FLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG---------- 141 (368)
T ss_pred HHHhccHHHHHHHHHHHHhHhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------
Confidence 2222333333333 22233322 22233333445566789999999999999999999999999998876
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 408 ESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
+|+..|.+.+++.++..++.+...+
T Consensus 142 -gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 142 -GLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999988777666555554433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-11 Score=114.64 Aligned_cols=176 Identities=11% Similarity=0.077 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHH
Q 013609 239 WAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVG 318 (439)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 318 (439)
....+.+++.+.-........| .+++++|.+..+.++..+...++..++++..|++.||+|||+ .+..+
T Consensus 11 ~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~----------~~~~~ 79 (412)
T TIGR02332 11 IFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR----------WIAGI 79 (412)
T ss_pred HHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH----------HHHHH
Confidence 3444444444554555555566 566669999999999999999999999999999999999999 88888
Q ss_pred HHHHHHHHhhhcccCChhHHHHHH-HHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhcc
Q 013609 319 FMVASIALMALPIFRSSNGAIFCS-SIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEA 396 (439)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 396 (439)
.++..++.....+.++.......- +.+.+.+.. .+.......+..| ++|+++.|+.+....+|..+++.+.+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (412)
T TIGR02332 80 MVLWGIASTATMFATGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL 158 (412)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888888877776665444433 333333333 3444445566554 7899999999999999999999999988753
Q ss_pred ccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 397 AKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
... .+..+|+..|.+.++..++..++.++.
T Consensus 159 ~~~-----~~~~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 159 DGL-----MALKGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred CCC-----CCccchhHHHHHHHHHHHHHHHHHhhc
Confidence 100 011389999999877776554444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=116.30 Aligned_cols=170 Identities=14% Similarity=0.040 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH-HHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchH--H------HHHHH
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAA-ADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRK--V------LLFSF 81 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~------l~~~~ 81 (439)
.....+..++............|.+ .+++|.++.+.+++.+...++..++.++.|+++||+|||+ . ...+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 296 (399)
T TIGR00893 217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG 296 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 3444455555555666666667765 4568989999999999999999999999999999999996 1 11122
Q ss_pred HHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhccc
Q 013609 82 VLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN 161 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 161 (439)
++..+........+ +.+..+....+.+.+.+ ..+...+++.|.+|+++|++..++.+....+|..++|.+.+.+.+..
T Consensus 297 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~ 374 (399)
T TIGR00893 297 LVLSLLMFATNYVN-IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT 374 (399)
T ss_pred HHHHHHHHHhccch-hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence 22222222333333 45555555555555555 78999999999999999999999999999999999999999999988
Q ss_pred C-CchhHHHHhHHHHHHHHHHh
Q 013609 162 G-PNSVFNAEAALGGMWSLLWF 182 (439)
Q Consensus 162 ~-wr~~f~~~~~~~~~~~~~~~ 182 (439)
| |+..|++.++..++..+..+
T Consensus 375 g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 375 GSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred CchhHHHHHHHHHHHHHHHHHH
Confidence 8 99999988887776555443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-11 Score=118.14 Aligned_cols=172 Identities=17% Similarity=0.102 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHH
Q 013609 239 WAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVG 318 (439)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 318 (439)
..+++..+.............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+|||+ .+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~----------~~~~~ 73 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR----------LFLIS 73 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHH----------HHHHH
Confidence 344555566666666777778888776 8999999999999999999999999999999999999 88888
Q ss_pred HHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 319 FMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
.++..++.......++....+..-.+.....+...+.......+ .++++|+++.++......+|..++|.+.+++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 153 (485)
T TIGR00711 74 TFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY 153 (485)
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc
Confidence 88888888877777666554444333322233333444444445 45589999999999999999999999999999887
Q ss_pred cccccCCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 398 KTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
+|+..|++.+.+.++..++.....
T Consensus 154 -----------~w~~~f~~~~~~~~~~~~~~~~~~ 177 (485)
T TIGR00711 154 -----------HWRWIFLINVPIGIIVVVVAFFIL 177 (485)
T ss_pred -----------CceehhhhhhHHHHHHHHHHHHHc
Confidence 899999888777766655554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=109.18 Aligned_cols=173 Identities=18% Similarity=0.149 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhh
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFW 90 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 90 (439)
........+...-....+..+-|.+.+..|.|.++++++.-.|.++..++..+.|+++|| +.|+.+.....+.++..+.
T Consensus 214 ~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~ 292 (394)
T COG2814 214 LLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLA 292 (394)
T ss_pred HHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHH
Confidence 333334444444555667777888888899999999999999999999999999999999 9999999988888877777
Q ss_pred hcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHH
Q 013609 91 LKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAE 170 (439)
Q Consensus 91 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~ 170 (439)
..+.+++.+..++.-++.|+............+++ ..+|.+..+.+++....++|..+|..++|.+.+++|+....++.
T Consensus 293 l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~ 371 (394)
T COG2814 293 LTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVG 371 (394)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 77666577777777788888877666666666666 33688999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 013609 171 AALGGMWSLLWFKYA 185 (439)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (439)
+++.++...+.+...
T Consensus 372 a~l~~~a~~~~~~~~ 386 (394)
T COG2814 372 AALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888766665443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=115.03 Aligned_cols=152 Identities=16% Similarity=0.011 Sum_probs=127.2
Q ss_pred hhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHH
Q 013609 24 ERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVV 103 (439)
Q Consensus 24 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (439)
.........|.+.+|.|.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.++++ +.+.+++
T Consensus 220 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ 298 (382)
T PRK11128 220 SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT-ALPWLIV 298 (382)
T ss_pred HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHH
Confidence 333444555666678999999999999999999999999999999999999999999999988888888886 8999999
Q ss_pred HHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHh-hhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHH
Q 013609 104 ARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTT-SGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWS 178 (439)
Q Consensus 104 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~ 178 (439)
..++.|++.+...+....++.+. +++++++..+..+ ....+|..+||.++|.+.|..|+ ..|+..+.+.++..
T Consensus 299 ~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 299 IQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 99999999998889999998887 5667788899886 56678889999999999998887 46666666655443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-11 Score=112.31 Aligned_cols=173 Identities=13% Similarity=0.093 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHH
Q 013609 238 VWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTV 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 317 (439)
+.......+....+.......+|.+.++ +|.+..+.++..+...++..++.++.|+++||+|||+ .+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~----------~l~~ 73 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP----------VAIP 73 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH----------HHHH
Confidence 3344455555666666667778887776 8999999999999999999999999999999999998 7777
Q ss_pred HHHHHHHHHhhhcccCChhHHHHHHHH-HHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhc
Q 013609 318 GFMVASIALMALPIFRSSNGAIFCSSI-ALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395 (439)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 395 (439)
+.++..++.......++.........+ +.+... ..+.......+ .++++|+++.++.+....++..++|.+.+.+.+
T Consensus 74 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~ 152 (392)
T PRK10473 74 GAALFIIASLLCSLAETSSLFLAGRFLQGIGAGC-CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML 152 (392)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 877777777777666555443333222 222222 22233334444 456899999999999999999999999988887
Q ss_pred cccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 396 AAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
.. +|+..+++.+++.++..+......+
T Consensus 153 ~~-----------g~~~~~~~~~~~~~i~~~~~~~~~~ 179 (392)
T PRK10473 153 KF-----------PWQSLFYTMAAMGILVLLLSLFILK 179 (392)
T ss_pred Cc-----------ChHHHHHHHHHHHHHHHHHHHHHcC
Confidence 76 7999998888777666655544433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=117.73 Aligned_cols=139 Identities=13% Similarity=0.081 Sum_probs=106.1
Q ss_pred hHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcc-hHHHHHHHHH
Q 013609 28 FSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPN-NVFILVVARL 106 (439)
Q Consensus 28 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~ 106 (439)
+....|.+.++.|.++.+.+...+.+.++..++.++.|++.||+|||+.+..+.++..+........++ +...+...-+
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF 329 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 445677777788999999999999999999999999999999999999999888776665554433221 2222222222
Q ss_pred HHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchh
Q 013609 107 LVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSV 166 (439)
Q Consensus 107 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~ 166 (439)
..+++.....+..+.++.|.+|+++|++++|+......+|..++|.+.+++.+..|+...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence 222333334456678889999999999999999999999999999999999998876554
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.7e-12 Score=118.77 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHh-hCCCccchhhhhhhhhhhhhhhccccccccccc--CchHHH-HHHHHHHHHH
Q 013609 12 ILTFISTCVCYIERVGFSIAYTAAADA-AGVNQSSKGTILSTFYYGYACSQVPGGWAAQKI--GGRKVL-LFSFVLWSST 87 (439)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~ 87 (439)
....+..++............|.+.++ .|.+..+.++..+.+.++..++.++.|+++||+ +||+.. .....+..++
T Consensus 256 ~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~ 335 (452)
T PRK11273 256 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 335 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 334444444444445556677776554 789989999999999999999999999999999 555432 2222333333
Q ss_pred HhhhcC--CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHH-HHhhhhhhhhcccCCc
Q 013609 88 CFWLKL--DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAA-MGMLFLPSLVKYNGPN 164 (439)
Q Consensus 88 ~~~~~~--~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~wr 164 (439)
.....+ .. +.+...+..++.|.+..........+..|.+|+++||+++|+.+....+|.. .+|.+.+.+.++.||+
T Consensus 336 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~ 414 (452)
T PRK11273 336 TIVYWLNPAG-NPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 414 (452)
T ss_pred HHHHHHhccc-ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcch
Confidence 322222 22 4555555555556543333333445678999999999999999988888765 4799999999999999
Q ss_pred hhHHHHhHHHHHHHHHHhhhc
Q 013609 165 SVFNAEAALGGMWSLLWFKYA 185 (439)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~ 185 (439)
..|++.++.+++..+....+.
T Consensus 415 ~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 415 GGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999988887776655554343
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-11 Score=112.39 Aligned_cols=172 Identities=14% Similarity=0.104 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHH
Q 013609 241 IVVNNFTFHYALYVLMNWLPTY--FELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVG 318 (439)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 318 (439)
+..........+.....+.|.+ +++.+|.++.+.+...+...++..++.++.|+++||++||+ .+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~----------~~~~~ 77 (401)
T PRK11043 8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKP----------VLLAG 77 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcH----------HHHHH
Confidence 3333334444445555555544 45568999999999999999999999999999999999999 77777
Q ss_pred HHHHHHHHhhhcccCChhHHHHHHH-HHHHhhhcccccccccc-cccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcc
Q 013609 319 FMVASIALMALPIFRSSNGAIFCSS-IALGFLALGRAGFAVNH-MDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEA 396 (439)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 396 (439)
..+..++.+.....++.+....... .+.+..... +...... +..++++++...+..+....++..++|.+.+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 156 (401)
T PRK11043 78 LSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAA-VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH 156 (401)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777766666655544433322 222222222 2222333 344556788889999988999999999999999988
Q ss_pred ccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccC
Q 013609 397 AKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
. +|+..+.+.+++.++..+..+..+++
T Consensus 157 ~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 157 F-----------GWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred C-----------ChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7 89999988887777766665555443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=115.48 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=116.0
Q ss_pred hhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcC---CcchHHHH
Q 013609 26 VGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKL---DPNNVFIL 101 (439)
Q Consensus 26 ~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~l 101 (439)
.......|. +.+++|.++.+...+.........++.++.|+++||+|||+++..+.++..++...... ..++.+.+
T Consensus 267 ~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (438)
T PRK09952 267 YIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIV 346 (438)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 333444454 45678888776655666666777888899999999999999998887765554432221 22245555
Q ss_pred HHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhh-hhhHHHHHHhhhhhhhhccc--CCchhHHHHhHHHHHHH
Q 013609 102 VVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTS-GMYLGAAMGMLFLPSLVKYN--GPNSVFNAEAALGGMWS 178 (439)
Q Consensus 102 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~--~wr~~f~~~~~~~~~~~ 178 (439)
++..++.|++.+...+...++++|.+|.+.|+...++... +..+|..++|.+.+++.+.. +|+..+...++..++..
T Consensus 347 ~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~ 426 (438)
T PRK09952 347 FFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA 426 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 5566777888887888889999999999999988888554 45589999999999998743 48888887777776655
Q ss_pred HHHhhhccC
Q 013609 179 LLWFKYATD 187 (439)
Q Consensus 179 ~~~~~~~~~ 187 (439)
+..+ ..+|
T Consensus 427 v~~~-~~~~ 434 (438)
T PRK09952 427 MTAL-LMKD 434 (438)
T ss_pred HHHH-Hccc
Confidence 5554 3444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-11 Score=111.45 Aligned_cols=188 Identities=11% Similarity=-0.010 Sum_probs=124.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHH
Q 013609 235 NLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFL 314 (439)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 314 (439)
+|.++...+.........+.+....+.+-++.+|+|..|.+++.+...+...+.++..|++.||+|.|+ +
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~----------v 102 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRR----------W 102 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH----------H
Confidence 356677676666666666666666666666469999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHhhhccc-----CChhHHHHH-HHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHH
Q 013609 315 NTVGFMVASIALMALPIF-----RSSNGAIFC-SSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGV 387 (439)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~ 387 (439)
...+.++..+..+...+. ++....+.. .+.+.+ +...+.......+ .++++||++.|+.....++|..+++
T Consensus 103 ~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig--g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 103 TVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA--GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH--HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence 778877777777776653 344333333 233332 3333334444445 4457899999999877778877666
Q ss_pred HHHHHhh-----ccccccccC--CCCcccchhHHHHHHHHHHHHHHHHHHhccC
Q 013609 388 DMTGKLL-----EAAKTTYSD--LSSPESWRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 388 ~~~g~l~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
.+...+. +..+..... ..+..+++.+..+...+.++..+..++..++
T Consensus 181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6655433 222111000 0012357777777777776666666655443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-11 Score=112.30 Aligned_cols=175 Identities=11% Similarity=0.050 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHH
Q 013609 237 PVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNT 316 (439)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 316 (439)
.+....+..+.............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+|||+ .+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~----------~~~ 81 (405)
T TIGR00891 13 AFSAAWLGWLLDAFDFFLVALVLAEVAGE-FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL----------PMV 81 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----------HHH
Confidence 34455666666666666677777766554 9999999999999999999999999999999999999 777
Q ss_pred HHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccc-cccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhc
Q 013609 317 VGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNH-MDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395 (439)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 395 (439)
.+.++.+++.+.....++.........+.....+...+...... +..++++|+++.++.+....+|..+++.+.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 82 TSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78777777777777666655544433332222233333333344 44556899999999999999999999999999887
Q ss_pred cccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 396 AAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
..+ .+|+..+.+.++..++..+.....
T Consensus 162 ~~~---------~~w~~~f~~~~~~~~~~~~~~~~~ 188 (405)
T TIGR00891 162 VWG---------DGWRALFFISILPIIFALWLRKNI 188 (405)
T ss_pred hcC---------ccHHHHHHHHHHHHHHHHHHHHhC
Confidence 651 148888887666555554443333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=115.68 Aligned_cols=176 Identities=12% Similarity=0.036 Sum_probs=117.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHH
Q 013609 234 VNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKF 313 (439)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 313 (439)
+++.++...+.....+.....+....| ++++ .|.++.+.++..+...++..++.++.|+++||+++|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~---------- 92 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRV---------- 92 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCce----------
Confidence 344444444544444444444455556 4555 5999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhhcccC----ChhHHHHH-HHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHH
Q 013609 314 LNTVGFMVASIALMALPIFR----SSNGAIFC-SSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVD 388 (439)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~ 388 (439)
.+..+.++.+++.+.....+ +....... .+.+.+.+....+......+..++++|++++|+.+...++++.+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 172 (438)
T TIGR00712 93 FLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPL 172 (438)
T ss_pred ehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHH
Confidence 66777777666666554432 22112221 22222222222222233333455689999999999999999999999
Q ss_pred HHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 389 MTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 389 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
+.+...+.. .+|+..|++.+++.++..+..++.
T Consensus 173 l~~~~~~~~----------~~w~~~f~~~~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 173 LVLLGMAWF----------NDWHAALYFPAICAIIVALFAFAM 205 (438)
T ss_pred HHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 888766543 389999999888877765544443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-11 Score=114.62 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=105.6
Q ss_pred HHHhhhhhHHHHHHHHHh-hCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhh----hcCCc
Q 013609 21 CYIERVGFSIAYTAAADA-AGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFW----LKLDP 95 (439)
Q Consensus 21 ~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~----~~~~~ 95 (439)
............|.+.++ +|.+..+.++....+.++..++.++.|+++||+|||+++..+.++..+.... ....+
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP 329 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444455667776554 7999999999888999999999999999999999999988765543322211 11232
Q ss_pred chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhh-hhhHHHHHHhhhhhhhhcccCCch
Q 013609 96 NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTS-GMYLGAAMGMLFLPSLVKYNGPNS 165 (439)
Q Consensus 96 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~~wr~ 165 (439)
++..+.....+.|++.+...+....++.|.+|+++|+...++... +..++..++|.+.+.+.++.|+++
T Consensus 330 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~ 399 (434)
T PRK15075 330 -SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKA 399 (434)
T ss_pred -chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence 454555556666777776667777889999999999999998644 444557789999999999888653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=114.28 Aligned_cols=174 Identities=17% Similarity=0.169 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHhhhh-hHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCch--HHHHHHHHHHHH
Q 013609 10 IVILTFISTCVCYIERVG-FSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGR--KVLLFSFVLWSS 86 (439)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~ 86 (439)
.+....+++++..-..+. .......-.+++|++..+...+.-+..+...++++++|++.||+|.| +++.++++++.+
T Consensus 282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~ 361 (477)
T PF11700_consen 282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWII 361 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 333334444443323333 33344445568999999999999999999999999999999999999 888888877755
Q ss_pred HHhhhcC--------CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhh
Q 013609 87 TCFWLKL--------DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLV 158 (439)
Q Consensus 87 ~~~~~~~--------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 158 (439)
..+...+ .. +-+.+.+.-++.|+..|..++...++.+|..|+++.+..+|++....-....+||.+-+.+.
T Consensus 362 i~~~g~~G~~~~~~g~~-~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~ 440 (477)
T PF11700_consen 362 IPLYGLFGFWPSFFGLK-SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT 440 (477)
T ss_pred HHHHHHHHhhhcccCcc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 33 77889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC-CchhHHHHhHHHHHHHHHHhhh
Q 013609 159 KYNG-PNSVFNAEAALGGMWSLLWFKY 184 (439)
Q Consensus 159 ~~~~-wr~~f~~~~~~~~~~~~~~~~~ 184 (439)
+..| -|..+....++.++..++.++.
T Consensus 441 ~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 441 DATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 8776 8888888877776665555433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=113.49 Aligned_cols=164 Identities=17% Similarity=0.173 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHH
Q 013609 244 NNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVAS 323 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
..+.............|.+.++ +|.++.+.+++.+...++..++.++.|++.||++||+ .+..+.++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~----------~~~~~~~~~~ 93 (398)
T TIGR00895 25 IMLMDGYDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKR----------VLLWSILLFS 93 (398)
T ss_pred HHHHHHHHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH----------HHHHHHHHHH
Confidence 3344444445555666766665 8999999999999999999999999999999999998 7777777777
Q ss_pred HHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccccc
Q 013609 324 IALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYS 402 (439)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~ 402 (439)
++.+.....++.+.......+.....+...+.......+..| ++|+++.++.+....+|..+++.+.+.+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----- 168 (398)
T TIGR00895 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF----- 168 (398)
T ss_pred HHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-----
Confidence 777766666555444433333222223334444555555555 78999999999999999999999999999877
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHH
Q 013609 403 DLSSPESWRAVFFIPGLLCILSSFVFL 429 (439)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (439)
+|+..+.+.+++.++..++..
T Consensus 169 ------g~~~~~~~~~~~~~~~~~~~~ 189 (398)
T TIGR00895 169 ------GWRSLFYVGGIAPLLLLLLLM 189 (398)
T ss_pred ------cceeehhhhhhHHHHHHHHHH
Confidence 788888887655544444433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=113.59 Aligned_cols=142 Identities=9% Similarity=0.035 Sum_probs=120.7
Q ss_pred CCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhH
Q 013609 40 GVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSI 119 (439)
Q Consensus 40 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 119 (439)
+.+..+.|.+.++..+...++.+..|++.||+|||+.+.++.++.++...+...++ |.+.+++.++++|++........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~ 328 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT-TALEVVILKMLHAFEVPFLLVGC 328 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778889998899999999999999999999999999998888888877886 88888999999999877666667
Q ss_pred HHHhhhccCCcccchhhHH-HhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHh
Q 013609 120 HTVLAQWVPPHERSRSVSL-TTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182 (439)
Q Consensus 120 ~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 182 (439)
..+..+..|++.++...+. .+....+|..+++.++|++.+..||+..|.+.+++.++..+...
T Consensus 329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888777766 66789999999999999999999999999999888877655543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=112.21 Aligned_cols=172 Identities=13% Similarity=0.088 Sum_probs=123.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHH
Q 013609 235 NLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFL 314 (439)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 314 (439)
+|+++.+....++...+........+...++ ++.++.+.+++.+...+...+..++.|+++||++||+ +
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~----------v 70 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGR----------V 70 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCch----------h
Confidence 4667777778788777766666666666655 7888888999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHh
Q 013609 315 NTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKL 393 (439)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 393 (439)
+..+..+.+++.+......+. ...-.+.+.+. +...+.......+ +++|+|++++|+.+...+++..+||.+.|.+
T Consensus 71 l~~~~~~~~~~~~~~~~~~~~--~~~r~l~G~~~-a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 71 MFIANGIKLLGCLLMLFGIHP--LLAYGLVGIGA-AAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL 147 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776665554443332 22222233333 3334454555555 5558999999999999999999999999999
Q ss_pred hccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 394 LEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
.+.. +...+.+.+...+++.+....++
T Consensus 148 ~~~~------------~~~~~~i~~~~~~~~~~~~~~l~ 174 (393)
T PRK11195 148 ADPH------------AEAALAVCALIYLLAALFNLFIP 174 (393)
T ss_pred HHHH------------HHHHHHHHHHHHHHHHHHHhcCC
Confidence 8843 66666666655555544444443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8e-11 Score=105.70 Aligned_cols=279 Identities=12% Similarity=0.074 Sum_probs=167.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccc----cCchHHHHHH-HHH
Q 013609 9 LIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQK----IGGRKVLLFS-FVL 83 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~l~~~-~~~ 83 (439)
..++.++...+...+....--...+++.+++|++....+.+--..-+...+.+|+.|..+|| |||||.++.. ...
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 33344444444444444444556777888999999999999999999999999999999995 8988877664 555
Q ss_pred HHHHHhhhcCCcchH-----------------HHHHHHHHHHhhhcccchhhHHHHhhhccCCcccch-hhHHHhhhhhH
Q 013609 84 WSSTCFWLKLDPNNV-----------------FILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSR-SVSLTTSGMYL 145 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~-----------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~ 145 (439)
.+++.++.+++. ++ .+++++--+.-++.-.....+.+++.|...++++.+ +.+.+.....+
T Consensus 112 i~~~l~Lig~aa-Dig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av 190 (498)
T KOG0637|consen 112 IAVSLFLIGYAA-DIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV 190 (498)
T ss_pred HHHHHhhhhhHh-hhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence 666777777764 32 334444445555666778889999999998777666 99999999999
Q ss_pred HHHHHhhhhhhhhcccCCchh--HHHHhHHHHHHHHHHhhh-------ccCCCC--CCCCCCCcccccCccCcccchhhh
Q 013609 146 GAAMGMLFLPSLVKYNGPNSV--FNAEAALGGMWSLLWFKY-------ATDPPR--SEHPKASAAGFGESLLPMRDQKVK 214 (439)
Q Consensus 146 g~~~g~~~~~~l~~~~~wr~~--f~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 214 (439)
|..+|..++++ .+|+-. |......-+.+..+-..+ ..++-. +..++.+........ +.+
T Consensus 191 GnvLGY~~g~y----~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~---~~~--- 260 (498)
T KOG0637|consen 191 GNVLGYALGSY----LGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTTA---RSK--- 260 (498)
T ss_pred cceeeeecccc----cCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCcccc---ccc---
Confidence 99999988874 345432 322222222222111111 111111 100000000000000 000
Q ss_pred hccccccccccCchHHhhh--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCccccc----------------c
Q 013609 215 VDNGGSAMKAAKIPWKRIV--VNLPVWAIVVNNFTFHYALYVLMNWLPTYFEL-GLQLSLQEM----------------G 275 (439)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~----------------~ 275 (439)
..+..........+ ..|..+.+++...+.+.+++.+..+...++-+ +++-++... .
T Consensus 261 -----~~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~ 335 (498)
T KOG0637|consen 261 -----SSKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGC 335 (498)
T ss_pred -----ccCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccch
Confidence 00000000111122 24678889999999999999999888888743 444433221 1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 013609 276 SSKMMPYLNMFIFSNIGGVVADHLITKR 303 (439)
Q Consensus 276 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 303 (439)
+=+.++.+...+.+....++.||+|.|+
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~ 363 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRK 363 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcce
Confidence 2234555666677777888899998554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=117.74 Aligned_cols=164 Identities=15% Similarity=0.064 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHhhCCCccchhh------------hhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCC
Q 013609 27 GFSIAYTAAADAAGVNQSSKGT------------ILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLD 94 (439)
Q Consensus 27 ~~~~~~~~i~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 94 (439)
......|.+.++.|.+..+.+. ......++..++.++.++++||+|||++++++..+.+++..+.++.
T Consensus 306 ~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~ 385 (502)
T TIGR00887 306 GVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA 385 (502)
T ss_pred ccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3344467777788876543221 1233445566688889999999999999988887777666555432
Q ss_pred cc---hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc----------c
Q 013609 95 PN---NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY----------N 161 (439)
Q Consensus 95 ~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------~ 161 (439)
.+ +...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|..++|.+.+.+.+. .
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 465 (502)
T TIGR00887 386 YNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI 465 (502)
T ss_pred HHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc
Confidence 10 1111111111122222234566777889999999999999999999999999999999988773 3
Q ss_pred CCchhHHHHhHHHHHHHHHHhhhccCCCCC
Q 013609 162 GPNSVFNAEAALGGMWSLLWFKYATDPPRS 191 (439)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~ 191 (439)
++...|++.+++.++..+.. ++.||++.+
T Consensus 466 ~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~ 494 (502)
T TIGR00887 466 WMGHVLEIFALFMFLGILFT-LLIPETKGK 494 (502)
T ss_pred cchHHHHHHHHHHHHHHHHh-eEeccCCCC
Confidence 45667888877777655544 466775543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=109.65 Aligned_cols=163 Identities=13% Similarity=0.036 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHH
Q 013609 246 FTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIA 325 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
.+...........+|.+.++ +|.|+.+.++..+...++..++.++.|+++||++||+ .+..+..+..++
T Consensus 18 ~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~----------~~~~~~~~~~~~ 86 (394)
T PRK11652 18 AVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP----------VILVGMSIFILG 86 (394)
T ss_pred HHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH----------HHHHHHHHHHHH
Confidence 33334444444556766655 8999999999999999999999999999999999998 777777777777
Q ss_pred HhhhcccCChhHHHHHHHHHHHhhhccccccccccccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCC
Q 013609 326 LMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDL 404 (439)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~ 404 (439)
.+.....++.+.......+.....+...+.......+. ++++++.+.+..+....++..++|.+.+.+.+..
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------- 159 (394)
T PRK11652 87 TLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF------- 159 (394)
T ss_pred HHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 76666655554443333222222222222222333443 4478999999999999999999999999998876
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHH
Q 013609 405 SSPESWRAVFFIPGLLCILSSFVFLL 430 (439)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (439)
+|+..|.+.++..++..+....
T Consensus 160 ----g~~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK11652 160 ----GWRACYLFLLLLGAGVTFSMAR 181 (394)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHH
Confidence 7999998887766554444333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=110.00 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhc
Q 013609 251 ALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALP 330 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
....+...+|.+.++ +|.|+.+.+...+...++..++.++.|.++||++||+ .+..+.....++.+...
T Consensus 28 ~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~----------~l~~~~~~~~~~~~~~~ 96 (406)
T PRK15402 28 ANDMIQPGMLAVVED-FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRP----------VMLAGVAFFILTCLAIL 96 (406)
T ss_pred hhhhHhcchHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH----------HHHHHHHHHHHHHHHHH
Confidence 334444556655554 8999999999999999999999999999999999999 77777777777776666
Q ss_pred ccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCccc
Q 013609 331 IFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPES 409 (439)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~ 409 (439)
..++.+.......+.....+...+.......+ .++++|.+..++......++..++|.+.+.+.+.. +
T Consensus 97 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-----------~ 165 (406)
T PRK15402 97 LAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL-----------P 165 (406)
T ss_pred HHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------C
Confidence 66555443333222222222222233333344 45578889999998888899999999999998876 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 013609 410 WRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
|+..+++.+++.+++.+.....
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~ 187 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRA 187 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh
Confidence 9999988888877766654443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.2e-09 Score=97.34 Aligned_cols=367 Identities=10% Similarity=0.007 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCC-ccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHh
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAAADAAGVN-QSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCF 89 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s-~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 89 (439)
...+...+++...+.-+.....|.+..+..-+ ---.+...-.-.+...+.++..|.+.||..|.++...+.+.--++..
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence 34567788888888888999999888777432 22233333344556678889999999999999988776554322211
Q ss_pred hh----c--CC--cc------hHHHHHHHHHHHhhhcc-cchhhHHHHhhhcc------CCcccchhhHHHhhhhhHHHH
Q 013609 90 WL----K--LD--PN------NVFILVVARLLVGVSQG-FIFPSIHTVLAQWV------PPHERSRSVSLTTSGMYLGAA 148 (439)
Q Consensus 90 ~~----~--~~--~~------~~~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~g~~ 148 (439)
+. . +. +. ....+++.-.+.|.-.- .......+.=.||. +++++.+..+...-.--+.-+
T Consensus 84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl 163 (432)
T PF06963_consen 84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL 163 (432)
T ss_pred HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence 11 1 11 10 11222222222222111 11122222234553 234456666666667777889
Q ss_pred HHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhc----cCCCCCCCCCCCcccccCccCc----ccchhhhhccccc
Q 013609 149 MGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYA----TDPPRSEHPKASAAGFGESLLP----MRDQKVKVDNGGS 220 (439)
Q Consensus 149 ~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 220 (439)
++|++.|.+.+..+.+....+.++..++..++-+++. +..|+-..++.+.++...++.+ ............+
T Consensus 164 laPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (432)
T PF06963_consen 164 LAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWN 243 (432)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHH
Confidence 9999999999988888888877777776554433322 2223211111111111100000 0000000000011
Q ss_pred cccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhh
Q 013609 221 AMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300 (439)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 300 (439)
..++...+|+..+++|.+.......++ ++...++......|+.. .|+++...|..-+...+.++.+..+.+++.+|+|
T Consensus 244 ~~~~~~~~w~~Y~~q~vflas~alalL-Y~TVLsf~~lmt~yl~~-~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG 321 (432)
T PF06963_consen 244 PLRTIIRGWRTYFRQPVFLASFALALL-YFTVLSFGGLMTAYLKS-QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG 321 (432)
T ss_pred HHHHHhccHHHHHhCHHHHHHHHHHHH-HHHHhcCcHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122334567777777766555444444 44455677888889988 5999999999999999999999999999999999
Q ss_pred hccccchhhhhHHHHHHHHHHHH----HHHhhhcccCCh--hHHHHHHHHHHHhh-----hcccccccccccccCCChhh
Q 013609 301 TKRILSVTRTRKFLNTVGFMVAS----IALMALPIFRSS--NGAIFCSSIALGFL-----ALGRAGFAVNHMDIAPRYAG 369 (439)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 369 (439)
..+ .-..+..... .+...+....++ ......++.+.... ++-........+++++++||
T Consensus 322 lvr----------~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg 391 (432)
T PF06963_consen 322 LVR----------AGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERG 391 (432)
T ss_pred chh----------hHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhh
Confidence 887 3333333222 222222222222 22222222222222 22233445566667778999
Q ss_pred HHHHHHHHHhhhhHHHHHHH
Q 013609 370 IVMGISNTAGTLAGIVGVDM 389 (439)
Q Consensus 370 ~~~g~~~~~~~~g~~i~~~~ 389 (439)
+.+|+-+..+++...+.-.+
T Consensus 392 ~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 392 AVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887765444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.3e-11 Score=111.12 Aligned_cols=158 Identities=19% Similarity=0.173 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 013609 252 LYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPI 331 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
.......+|.+.++ +|.|+.+.+...+...++..++.++.|++.||++||+ .+..+.++.+++......
T Consensus 7 ~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~----------~~~~~~~~~~i~~~~~~~ 75 (377)
T PRK11102 7 IDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP----------VILGGTLVFALAAVACAL 75 (377)
T ss_pred HHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH----------HHHHHHHHHHHHHHHHHH
Confidence 34455677788776 8999999999999999999999999999999999988 788888888887777776
Q ss_pred cCChhHHHHHHHHHHHhhhccccccccccccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccc
Q 013609 332 FRSSNGAIFCSSIALGFLALGRAGFAVNHMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESW 410 (439)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~ 410 (439)
.++.........+.....+...+.......+. ++|+|+++.++.+....+|..++|.+.+.+.+.. +|
T Consensus 76 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----------~~ 144 (377)
T PRK11102 76 AQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-----------SW 144 (377)
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------Ch
Confidence 66555444433332222232333334444444 4578999999999999999999999999999877 79
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 013609 411 RAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~ 431 (439)
+..+.+.+.+.++..+.....
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 145 HAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999988887777665554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-11 Score=112.44 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHH
Q 013609 245 NFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASI 324 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
+++.+.....+....|.+. +.+|.|+.+.+++.+...++..++.++.|+++||++||+ .+..+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~----------~~~~~~~~~~~ 72 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLV-EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV----------FLPIGLILCAI 72 (379)
T ss_pred hhHHHHhHHhhhhhhHHHH-HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCee----------hhHHHHHHHHH
Confidence 3445555666666777654 458999999999999999999999999999999999999 88888888888
Q ss_pred HHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccC-CChhhHHHHHHHHHhhhhHHHHHH-HHHHhhcccccccc
Q 013609 325 ALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIA-PRYAGIVMGISNTAGTLAGIVGVD-MTGKLLEAAKTTYS 402 (439)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~-~~g~l~~~~~~~~~ 402 (439)
+.++....++.+.......+.....+...+.......+.. +++|+++.++.+....+|..++|. +.+.+.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----- 147 (379)
T TIGR00881 73 VNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY----- 147 (379)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC-----
Confidence 8877777766555444433333333444445555555544 478999999999999999999995 555555554
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 403 DLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
+|+..|.+.+++.++..+..+..
T Consensus 148 ------~~~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 148 ------SWHWVFIVPGIIAIIVSLICFLL 170 (379)
T ss_pred ------CchhHHHHHHHHHHHHHHHHhee
Confidence 78999888877766655555443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-11 Score=110.95 Aligned_cols=153 Identities=15% Similarity=0.061 Sum_probs=118.1
Q ss_pred hhhHHHHHHHHHhhCCCccchhhhhhhhhh-hhhhhcccccccccccCchHHHHHHHHHHHHHHhhhc------CCcchH
Q 013609 26 VGFSIAYTAAADAAGVNQSSKGTILSTFYY-GYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLK------LDPNNV 98 (439)
Q Consensus 26 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------~~~~~~ 98 (439)
.......+.+.+|.|.+++++|++...... ...++.++.|++.||+|+|+.+..+..+.++...... ..+ +.
T Consensus 225 ~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 303 (390)
T TIGR02718 225 VSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAP-GI 303 (390)
T ss_pred HHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCC-cH
Confidence 333445566667889999999999888764 6667789999999999999999887766533322221 122 44
Q ss_pred HHHHHHHHHHhhhcccchhhHHHHhhhccCC-cccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHH
Q 013609 99 FILVVARLLVGVSQGFIFPSIHTVLAQWVPP-HERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMW 177 (439)
Q Consensus 99 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~ 177 (439)
..+.....+.+++.+...+...+...+..++ +++++.+++.+...++|..++|.++|.+.+..|++..|++.+++.++.
T Consensus 304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 304 AVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4555566677777787778888888777776 789999999999999999999999999999999999999887766654
Q ss_pred HH
Q 013609 178 SL 179 (439)
Q Consensus 178 ~~ 179 (439)
.+
T Consensus 384 ~~ 385 (390)
T TIGR02718 384 IL 385 (390)
T ss_pred HH
Confidence 43
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.8e-11 Score=99.83 Aligned_cols=179 Identities=19% Similarity=0.141 Sum_probs=133.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHH
Q 013609 7 RYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSS 86 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 86 (439)
||..+......+...+ ..+.++...|++.+.+|+|.+|...+.+...+|..+ .++.|.+.||+|+|.++.+|.+...+
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV 78 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4665555555554444 567888899999999999999999999999999987 58889999999999999999999998
Q ss_pred HHhhhcCCc------chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc
Q 013609 87 TCFWLKLDP------NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY 160 (439)
Q Consensus 87 ~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 160 (439)
|.....++- .++|.+.+..++.|.+.+.....+.....+.|| ++||++.|+.-...+++..+-..+...+.+.
T Consensus 79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 887665431 167888888888888877777777777778887 6899999999999999988877766666554
Q ss_pred cCCchhHHHHhHHHHHHHHHHhhhccCCC
Q 013609 161 NGPNSVFNAEAALGGMWSLLWFKYATDPP 189 (439)
Q Consensus 161 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
+-..-+++.+....+..+....+.++.|
T Consensus 158 -~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 158 -DPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred -ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 3223334444444443333434444443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-10 Score=107.61 Aligned_cols=154 Identities=12% Similarity=0.089 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccC
Q 013609 254 VLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFR 333 (439)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
....-+|... +.+|.+..+.+...+...++..+++++.|.++||+|||+ .+..+..+..++.+.....+
T Consensus 34 ~~~p~l~~i~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~----------~l~~~~~~~~~~~~~~~~a~ 102 (413)
T PRK15403 34 LIQPGIINVV-RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP----------VLITGALIFTLACAATLFTT 102 (413)
T ss_pred hhccCHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH----------HHHHHHHHHHHHHHHHHHcC
Confidence 3334445544 448999999999999999999999999999999999999 77888888888777777776
Q ss_pred ChhHHHHHHH-HHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccch
Q 013609 334 SSNGAIFCSS-IALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWR 411 (439)
Q Consensus 334 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~ 411 (439)
+....+..-+ .+.+.. ...+.......|..| ++++++.++.+....++..++|.+.+.+.+.. +|+
T Consensus 103 ~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-----------gw~ 170 (413)
T PRK15403 103 SMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-----------HWK 170 (413)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CHH
Confidence 6655444322 233222 222233344555544 68899999999999999999999999988876 899
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 013609 412 AVFFIPGLLCILSSFVFLL 430 (439)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~ 430 (439)
..|++.++..+++.+..+.
T Consensus 171 ~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 171 VLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999988887777665443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-11 Score=115.13 Aligned_cols=147 Identities=13% Similarity=0.022 Sum_probs=115.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHh-hCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCc
Q 013609 17 STCVCYIERVGFSIAYTAAADA-AGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDP 95 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 95 (439)
..++............+.+.++ ++ ++.+.+++.+...++..++.+++++++||+|||+++..+..+.+++.+...+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 308 (437)
T TIGR00792 230 AYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG 308 (437)
T ss_pred HHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333333333333334444333 33 556677888888999999999999999999999999999988888877776654
Q ss_pred chHHHHHHHHHHHhhhcccchhhHHHHhhhccC-------CcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCc
Q 013609 96 NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVP-------PHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPN 164 (439)
Q Consensus 96 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr 164 (439)
++.+.+++..++.|++.+...+...++++|..+ ++++|...|+.+....+|..+++.+.+.+.+..|+.
T Consensus 309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 309 SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 367777888889999999899999999998865 456799999999999999999999999998877764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-10 Score=107.20 Aligned_cols=148 Identities=14% Similarity=0.086 Sum_probs=108.4
Q ss_pred HHHHHHhhCCCccchhhhhhhhh-hhhhhhcccccccccccCchHHHHHHHHHHHHHHhhh---cCCcchHHHHHHHHH-
Q 013609 32 YTAAADAAGVNQSSKGTILSTFY-YGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWL---KLDPNNVFILVVARL- 106 (439)
Q Consensus 32 ~~~i~~~~~~s~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~- 106 (439)
.+.+.+++|.++++.+++.+... .+..++.++.|++.||+|||+.+..+..+..+..+.. ++.+++.+.+++.-+
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34566779999999999987654 5688999999999999999998887776665554333 344335566555543
Q ss_pred ---HHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhh
Q 013609 107 ---LVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFK 183 (439)
Q Consensus 107 ---l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~ 183 (439)
..|++.+...+....++.+.+|.+++ ++.+...++|..+++.++|.+.+.+||+..|.+.+.++++..++...
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777775544 55555667788777778999999999999999988888776555543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=106.57 Aligned_cols=179 Identities=12% Similarity=0.081 Sum_probs=138.2
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhh
Q 013609 231 RIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRT 310 (439)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 310 (439)
+++.++....+.+.......+...+.+++=-++++ .|..+..-|......-.+.++.-++.+++.+|+|+-+
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~------- 437 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN------- 437 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc-------
Confidence 56777777777777777777777777888777777 6766666777777777888888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHH-hhhhHHHHHH
Q 013609 311 RKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTA-GTLAGIVGVD 388 (439)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~-~~~g~~i~~~ 388 (439)
++..++.....=++.+....++|..+..=++-....+..+.....+... .||+.++++.++.... -.+|-.+|..
T Consensus 438 ---v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl 514 (618)
T KOG3762|consen 438 ---VMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL 514 (618)
T ss_pred ---eeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhh
Confidence 8899999999988888888888877766665555545445555555555 5668999999998665 4578899999
Q ss_pred HHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 389 MTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 389 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
+.|.+.+.. +-+..|..+++.+++.++....+
T Consensus 515 IGG~~v~~f-----------g~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 515 IGGFVVERF-----------GARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred hhhhhheee-----------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998 77888888887777766655443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-10 Score=106.16 Aligned_cols=156 Identities=15% Similarity=0.065 Sum_probs=100.7
Q ss_pred hhhhHHHHHHH-HHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhh----cCCcchHH
Q 013609 25 RVGFSIAYTAA-ADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWL----KLDPNNVF 99 (439)
Q Consensus 25 ~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~----~~~~~~~~ 99 (439)
.+......|.+ .+++|.+..+.+...+...+...+++++.|+++||+|||+.+.++.++.++..... .... +..
T Consensus 259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 337 (432)
T PRK10406 259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVS-SPY 337 (432)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCC-cHH
Confidence 33444556664 45689998899998988888888999999999999999998877665443332211 1122 333
Q ss_pred HHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhH-HHHHHhhhhhhhhcccC-CchhHHHHhHHHHHH
Q 013609 100 ILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYL-GAAMGMLFLPSLVKYNG-PNSVFNAEAALGGMW 177 (439)
Q Consensus 100 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~ 177 (439)
..+..-.+.+++.+...+....+.+|++|+|.|+.++|+.+....+ .....|.+.+.+ +..| |...++..++..++.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~ 416 (432)
T PRK10406 338 AAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVA 416 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHH
Confidence 2222222233333334456678889999999999999998875443 344477777755 4345 555566555555554
Q ss_pred HHHHh
Q 013609 178 SLLWF 182 (439)
Q Consensus 178 ~~~~~ 182 (439)
.+..+
T Consensus 417 ~~~~~ 421 (432)
T PRK10406 417 FLVSL 421 (432)
T ss_pred HHHHH
Confidence 44444
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=108.95 Aligned_cols=175 Identities=17% Similarity=0.128 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccC--chHHHHHHHHHHHH
Q 013609 9 LIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIG--GRKVLLFSFVLWSS 86 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~ 86 (439)
..+....++..+...........+|...++.+.++.+.+.+.++..+...++.+..|+++|+.. ++.+..++++..++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 3556677778888888888899999999999999999999999999999999999999999988 56677888888999
Q ss_pred HHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC-Cch
Q 013609 87 TCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG-PNS 165 (439)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-wr~ 165 (439)
+...+++++ +++.+...-.+.|++.|.........+.|..+.++-..+.|+.....+++..+||++++.+.|..+ |..
T Consensus 378 ~~~~~p~~~-~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~ 456 (509)
T KOG2504|consen 378 ARLFLPFAT-TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH 456 (509)
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence 999999997 999999999999999998888888899999999999999999999999999999999999998776 999
Q ss_pred hHHHHhHHHHHHHHHHhhh
Q 013609 166 VFNAEAALGGMWSLLWFKY 184 (439)
Q Consensus 166 ~f~~~~~~~~~~~~~~~~~ 184 (439)
.|+..+...++....++..
T Consensus 457 ~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 457 AFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred ehhhcChHHHHHHHHHHHh
Confidence 9999988877766555433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.7e-08 Score=89.81 Aligned_cols=277 Identities=8% Similarity=-0.024 Sum_probs=167.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCC-----Cccchhhhhhhhhhhhhhh-cccccccccccCchHHHHHH
Q 013609 7 RYLIVILTFISTCVCYIERVGFSIAYTAAADAAGV-----NQSSKGTILSTFYYGYACS-QVPGGWAAQKIGGRKVLLFS 80 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----s~~~~g~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~ 80 (439)
.+..+....+..|+..++.+..-+ +.+.+.. +.+.+.++-+...+...+. .++.+++++|++|++++-+.
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR~----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~ 80 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILRD----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTV 80 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHH
Confidence 344455555666666665554444 4444433 4467889988887777666 89999999999999999887
Q ss_pred HHHHHHHHhhhcCC----cch--------------------------HHHHHHHHHHHhhhcccchh-hHHHHhhhccCC
Q 013609 81 FVLWSSTCFWLKLD----PNN--------------------------VFILVVARLLVGVSQGFIFP-SIHTVLAQWVPP 129 (439)
Q Consensus 81 ~~~~~~~~~~~~~~----~~~--------------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~ 129 (439)
...+.....++++. ++. .|...+.-+...+-...... .-..+..|.++.
T Consensus 81 ~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~ 160 (472)
T TIGR00769 81 ISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTI 160 (472)
T ss_pred HHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 76666555554443 101 23333444444444444444 677889999999
Q ss_pred cccchhhHHHhhhhhHHHHHHhhhhhhhhcc-------c-CCc----hhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCC
Q 013609 130 HERSRSVSLTTSGMYLGAAMGMLFLPSLVKY-------N-GPN----SVFNAEAALGGMWSLLWFKYATDPPRSEHPKAS 197 (439)
Q Consensus 130 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------~-~wr----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (439)
+|-.|..++++.+.++|..+++.+..++.+. . .|. ..+.+.++.+.+.. .+.+...+....++...+
T Consensus 161 ~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 239 (472)
T TIGR00769 161 DEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAII-LLYWWVNRNVLTDPRSYN 239 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccCCccccc
Confidence 9999999999999999999999988887631 1 232 12233333333322 233333222211100000
Q ss_pred cccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc---
Q 013609 198 AAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEM--- 274 (439)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--- 274 (439)
.++ ..++++.+.+..+.++.++|+|-++.+++...+++...+.+....-...++.+- |+.+-
T Consensus 240 ~~~--------------~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f 304 (472)
T TIGR00769 240 PAL--------------KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAF 304 (472)
T ss_pred hhh--------------ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 000 000111223345677888999988888888888877777776655566666442 33222
Q ss_pred -chhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 013609 275 -GSSKMMPYLNMFIFSNIGGVVADHLITKR 303 (439)
Q Consensus 275 -~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 303 (439)
|.+....++..++.+++.+++.+|+|-+.
T Consensus 305 ~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~ 334 (472)
T TIGR00769 305 MGDFSTWTGVVSVTMMLLSGNVIRKYGWLT 334 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33444455556666666788888887765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.9e-10 Score=99.18 Aligned_cols=176 Identities=15% Similarity=0.128 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHH
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLN 315 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 315 (439)
|+++...+.....+..++.+.... ..+++.+|+|+.|.+++.++..+.+.+.++..|.+.||+|.|+ ..
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~-~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~----------~~ 82 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLG-VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRK----------WT 82 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchH----------HH
Confidence 344444444444444444433333 3444669999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHhhhcccCChh--HHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHH
Q 013609 316 TVGFMVASIALMALPIFRSSN--GAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGK 392 (439)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 392 (439)
..+.++..+..+...+....+ +.+...-+..+..+............ .|||++|.+.|+.. .+|+|..+...+...
T Consensus 83 ~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~ 161 (417)
T COG2223 83 ILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL 161 (417)
T ss_pred HHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH
Confidence 888888777777766654333 22333333333334333333344444 56689999999998 999999999999999
Q ss_pred hhccccccccCCCCccc---chhHHHHHHHHHHHHHHHHHHhccC
Q 013609 393 LLEAAKTTYSDLSSPES---WRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 393 l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
+.... + |+.+..+.....++..+..++..++
T Consensus 162 v~~~~-----------g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 162 VAVAF-----------GFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHH-----------hhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 98887 4 8888888888887777776665543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-09 Score=101.61 Aligned_cols=180 Identities=13% Similarity=0.099 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHH
Q 013609 238 VWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTV 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 317 (439)
++.++...+...+.........|.+ ++.+|.+..+.+++.+...++..++++..|++.||+|+|+ .+..
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~----------~~~~ 73 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKA----------GILL 73 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH----------HHHH
Confidence 4555666666666665556777766 5559999999999999999999999999999999999999 8888
Q ss_pred HHHHHHHHHhhhccc---CChhHHHHH-HHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHh
Q 013609 318 GFMVASIALMALPIF---RSSNGAIFC-SSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKL 393 (439)
Q Consensus 318 ~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 393 (439)
+..+.+++.+.+... ++.+..+.. ++.+.+.+..............+++++++..++.+...++|..++|.+.+.+
T Consensus 74 g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 74 GLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887765432 233333332 2333333333322223333344557899999999999999999999999988
Q ss_pred hcccccccc-C--------------CCCcccchhHHHHHHHHHHHHHHHH
Q 013609 394 LEAAKTTYS-D--------------LSSPESWRAVFFIPGLLCILSSFVF 428 (439)
Q Consensus 394 ~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (439)
......... + .....+|+.+|.+.+++.++..++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 154 ILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643211000 0 0012368899988887766654444
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-10 Score=100.33 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=128.7
Q ss_pred HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhccc
Q 013609 35 AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGF 114 (439)
Q Consensus 35 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 114 (439)
-.+++|++..|...+.-...+..+++++++|++.||+|.|+++..+.++..+.++..-+.. .-..+.+.-.+.|...|.
T Consensus 279 g~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~-~~~~f~i~gll~g~s~G~ 357 (438)
T COG2270 279 GAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE-GELDFWILGLLVGTSLGG 357 (438)
T ss_pred HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHhcch
Confidence 3459999999999999999999999999999999999999999999999999888777775 566677777899999999
Q ss_pred chhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC-CchhHHHHhHHHHHHHHHHhhhccCC
Q 013609 115 IFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG-PNSVFNAEAALGGMWSLLWFKYATDP 188 (439)
Q Consensus 115 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~~~ 188 (439)
.+..+.++.++..|++|-++.+|+++...-.+..+||.+-+.+.+..| -|..+....++..+..++. ...|++
T Consensus 358 ~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L-~~v~~~ 431 (438)
T COG2270 358 AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL-LRVKVP 431 (438)
T ss_pred HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE-EeecCC
Confidence 999999999999999999999999999999999999999999888543 6766666555544443333 344443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-09 Score=101.20 Aligned_cols=146 Identities=16% Similarity=0.171 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHH
Q 013609 237 PVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNT 316 (439)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 316 (439)
.+..+.+..+...+.........|.+ ++.+|.|+.+.++..+...++..++++..|++.||+|+|+ .+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~----------~l~ 95 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA----------GII 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH----------HHH
Confidence 34555666677777777778888887 6669999999999999999999999999999999999999 888
Q ss_pred HHHHHHHHHHhhh---cccCChhHHHHHHH-HHHHhhhcccccccccccccCCC-hhhHHHHHHHHHhhhhHHHHHHHHH
Q 013609 317 VGFMVASIALMAL---PIFRSSNGAIFCSS-IALGFLALGRAGFAVNHMDIAPR-YAGIVMGISNTAGTLAGIVGVDMTG 391 (439)
Q Consensus 317 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~~~~~g 391 (439)
.+..+.+++.++. ...++....+...+ .+.+.+... +.......+.+|+ ++...+++.+....+|..++|.+.+
T Consensus 96 ~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~-~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 96 TGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887664 23444444333333 333333333 3333334456664 5556799999999999999999887
Q ss_pred Hhh
Q 013609 392 KLL 394 (439)
Q Consensus 392 ~l~ 394 (439)
.+.
T Consensus 175 ~l~ 177 (438)
T PRK10133 175 SLI 177 (438)
T ss_pred HHH
Confidence 665
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.6e-10 Score=103.12 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhC-CCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhc
Q 013609 14 TFISTCVCYIERVGFSIAYTAAADAAG-VNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLK 92 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 92 (439)
..+..++.+.....+....+...+|.| .+.+..+.+.+...++-.+.-...+++..|+|.|+++.++.+.+++=..+.+
T Consensus 212 Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a 291 (400)
T PF03825_consen 212 FLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA 291 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666667777777788888 6777788888888888999999999999999999999999999998888888
Q ss_pred CCcchHHHHH----HHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhh-hhhHHHHHHhhhhhhhhcccCCc---
Q 013609 93 LDPNNVFILV----VARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTS-GMYLGAAMGMLFLPSLVKYNGPN--- 164 (439)
Q Consensus 93 ~~~~~~~~l~----~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~~wr--- 164 (439)
..+++.+... ....++|+..+........++.+..|++.|+++.++++. ..++|..+|..++|++.|++|-+
T Consensus 292 ~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 292 YFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred HhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 7732444433 335569999999999999999999999999999999887 67899999999999999976644
Q ss_pred ---hhHHHHhHHHHHHHHHHhhhccC
Q 013609 165 ---SVFNAEAALGGMWSLLWFKYATD 187 (439)
Q Consensus 165 ---~~f~~~~~~~~~~~~~~~~~~~~ 187 (439)
..+.+.+.+.++..++...+.||
T Consensus 372 ~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 372 DWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45555666555555544444444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-08 Score=89.00 Aligned_cols=321 Identities=13% Similarity=0.118 Sum_probs=173.3
Q ss_pred hhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccC
Q 013609 49 ILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVP 128 (439)
Q Consensus 49 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 128 (439)
+.-+-.+...+..+.+.+..+|+..+.=...+.+++.++.++.++++ |.+.=+++-++.+++.|........+.+ .++
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~-~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~ 141 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP-SVWVRLLGVVLASLSSGLGEVTFLSLTH-FYG 141 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc-chhHHHHHHHHHhhhhhhhHHHHHHHHH-hcC
Confidence 44455566677777788889998766666677778889999999997 8999999999999999988887777644 565
Q ss_pred CcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC--chhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccC
Q 013609 129 PHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP--NSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLL 206 (439)
Q Consensus 129 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w--r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (439)
+ ...+.++.+.+.++++|+..-..+.+ .++ |..+++...+.++..+..++.+|+++..+..+ +.++..+.+.
T Consensus 142 ~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~-~~~~~~~~~~ 215 (402)
T PF02487_consen 142 K----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQ-ESESEDEAED 215 (402)
T ss_pred c----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCc-ccCCCCcccc
Confidence 3 35788889999999999987766666 554 67777777776665555555555443222111 1111000000
Q ss_pred cccchhhhhccccccccccCchHHhhhc-chhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCcc-cccchhhhhhHH
Q 013609 207 PMRDQKVKVDNGGSAMKAAKIPWKRIVV-NLPVWAIVVNNFTFHYALYVLMN-WLPTYFELGLQLSL-QEMGSSKMMPYL 283 (439)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~-~~~~~~~~~~~~ 283 (439)
+..+. +..+.+.+...+..+++-++ -|.....++-.+..++..+.++. ..|...-..-..++ ++..+....+.+
T Consensus 216 ~~~~~---~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~ 292 (402)
T PF02487_consen 216 DLLES---ETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQL 292 (402)
T ss_pred ccccc---ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHH
Confidence 00000 00000111111222222222 13333334444444555554432 22332211111121 223344455555
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhh---hcccCChhHHHHHHH-HHHHhhhccccccccc
Q 013609 284 NMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMA---LPIFRSSNGAIFCSS-IALGFLALGRAGFAVN 359 (439)
Q Consensus 284 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 359 (439)
+..+++--...+ |+ |+ .+++.+.-.+..+.+++ +.+.++.+..+..++ .+...+.........+
T Consensus 293 GVFISRSS~~~~--ri--r~--------lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I 360 (402)
T PF02487_consen 293 GVFISRSSLPFF--RI--RR--------LWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRI 360 (402)
T ss_pred HHhhhhcceeee--eh--hh--------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 555554322111 11 11 12222222222222221 112333333333222 2333444445556667
Q ss_pred ccccCCChhhHHHHHHHHHhhhhHHHHHHHHHH
Q 013609 360 HMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGK 392 (439)
Q Consensus 360 ~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 392 (439)
..+.++|+|..++|........|-.++..+.-+
T Consensus 361 ~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 361 SEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 778888999999999998888887777765543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-10 Score=111.14 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=109.6
Q ss_pred hhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcch-HHHHHHHHHHHhhhcccchhhHHHHhhhcc
Q 013609 49 ILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNN-VFILVVARLLVGVSQGFIFPSIHTVLAQWV 127 (439)
Q Consensus 49 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 127 (439)
......+....+.++.+++.||+|||+.+.++.++.+++.++..+.+++ .+...+.-++.+++.+...+..+.+..|.+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3345556677788889999999999999999999988888877776522 245555666777777777888999999999
Q ss_pred CCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccCCCC
Q 013609 128 PPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPR 190 (439)
Q Consensus 128 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~ 190 (439)
|++.|++++|+.+....+|..++|.+.+ + +..++..++.+.+...++..+..+ +.||+..
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~~ 499 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTL-FLPETKG 499 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCCC
Confidence 9999999999999999999999999988 4 345677788888877777666554 4565443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=101.14 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccC
Q 013609 254 VLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFR 333 (439)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
.....+|.+.++ +|.|+.+.++..+...++..++.+..|++.||+++|+ .+..+.++..++.... ..+
T Consensus 18 ~~~~~lp~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~----------~~~~~~~~~~~~~~~~-~~~ 85 (355)
T TIGR00896 18 SVGPLLPQIRSA-LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEER----------SVAAGLLLIAAGILIR-SAP 85 (355)
T ss_pred cCcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchH----------HHHHHHHHHHHHHHHH-Hhc
Confidence 344567776665 8999999999999999999999999999999999999 6677776666655554 344
Q ss_pred ChhHHHHHH-HHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchh
Q 013609 334 SSNGAIFCS-SIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRA 412 (439)
Q Consensus 334 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~ 412 (439)
+....+... +.+.+... ..+.......+..|++|+++.+..+....+|..+++.+.+.+.+..+ .+|+.
T Consensus 86 ~~~~l~~~~~~~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~---------~~w~~ 155 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAI-INVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSG---------GHWQQ 155 (355)
T ss_pred cHHHHHHHHHHHHHHHHH-HhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhHHH
Confidence 444333222 22333222 22333444566667899999999999999999999999998887651 13888
Q ss_pred HHHHHHHHHHHHH
Q 013609 413 VFFIPGLLCILSS 425 (439)
Q Consensus 413 ~~~~~~~~~~~~~ 425 (439)
.|...++..++..
T Consensus 156 ~f~~~~~~~~~~~ 168 (355)
T TIGR00896 156 ALAWWALPALLAL 168 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 8877666554443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.4e-10 Score=87.69 Aligned_cols=136 Identities=18% Similarity=0.263 Sum_probs=97.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccc
Q 013609 277 SKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGF 356 (439)
Q Consensus 277 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (439)
......++..++.+..+++.||++||+ ....+.....++.+.....++.+.......+.....+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 72 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKP----------VLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAG 72 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhH----------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhH
Confidence 445667888999999999999999998 6677776666666666555554444333333222223333444
Q ss_pred ccccccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 357 AVNHMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 357 ~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
.....|. ++++|+++.++.+...+++..++|.+.+.+.+.. +|+..+.+.+...+++.+......+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL-----------GWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-----------chHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4444454 5578999999999999999999999999998876 7888888888877777666665544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-10 Score=103.20 Aligned_cols=150 Identities=11% Similarity=0.085 Sum_probs=130.9
Q ss_pred CCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHH
Q 013609 41 VNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIH 120 (439)
Q Consensus 41 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 120 (439)
.++...|.+.+...+.-++...+..++.+|+|.|+.++++..+.++=...+++++ +.+.+.+.+.+.|+-.+.......
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~-~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT-NPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689999999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHhhhccCCcccchhhHHH-hhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccCCCCC
Q 013609 121 TVLAQWVPPHERSRSVSLT-TSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRS 191 (439)
Q Consensus 121 ~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~ 191 (439)
.++++.+|+|..++...+. +...++|..+.+.++|.+.|+.|.+..|++.+.+.++..++..+.++++++.
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 9999999988877887774 6799999999999999999999999999999999888888877777655543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=101.03 Aligned_cols=187 Identities=18% Similarity=0.166 Sum_probs=142.2
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
..|+.....+.+......-+.+........+-++-|.+..+..+..........+..+++..+.||+|||+.++.+..+.
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLM 345 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34444444444444444444556666677888999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhhcCCcc--hHH------HHHHHHHHHhhhccc-chhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhh
Q 013609 85 SSTCFWLKLDPN--NVF------ILVVARLLVGVSQGF-IFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLP 155 (439)
Q Consensus 85 ~~~~~~~~~~~~--~~~------~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 155 (439)
.+.++++..... +.. ..+++.++..++.+. ..|...-+.+|.+|++.|+.++++......+...+-...-.
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp 425 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP 425 (485)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877665421 111 123343333333222 45888999999999999999999999988888887777777
Q ss_pred hhhcccCCchhHHHHhHHHHHHHHHHhhhccCCCCCC
Q 013609 156 SLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSE 192 (439)
Q Consensus 156 ~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (439)
.+.+..|- ..|.+..+++.+..+..++..||++.+.
T Consensus 426 ~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 426 PLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred HHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 77776676 7888888899999999999999987654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-09 Score=98.32 Aligned_cols=162 Identities=12% Similarity=-0.002 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhhCCcccc-cchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCC
Q 013609 256 MNWLPTYFELGLQLSLQE-MGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRS 334 (439)
Q Consensus 256 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
..+...++.+.+|++..+ .|.+......+..+..+.+|+++||+|.|+ ++..+.+...+...+.++.++
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~----------vL~l~~l~Wsl~t~L~~fa~S 114 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP----------VLVLQALSFVCVWLLLLLGTS 114 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 344445666679999999 999999999999999999999999999999 888888888888888877655
Q ss_pred hhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHH
Q 013609 335 SNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVF 414 (439)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 414 (439)
.....+.=++.+..-+...........-+|+++|+++.|+.+....+|.++++++.+.+. .. +-..|....
T Consensus 115 l~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~--------gWr~y~~Ln 185 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TL--------GWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc--------CchhHHHHH
Confidence 544444433333333333333334444466689999999999999999999999999943 44 112455555
Q ss_pred HHHHHHHHHHHHHHHHhccCCc
Q 013609 415 FIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
++......++.++.+++++.+|
T Consensus 186 ~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 186 IISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHHHHhCCCCch
Confidence 6666666777777777775544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-08 Score=93.19 Aligned_cols=358 Identities=11% Similarity=0.040 Sum_probs=205.3
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCc-----cchhhh-hhhhhhhhhhhcccccccccccCchHHH
Q 013609 4 FPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQ-----SSKGTI-LSTFYYGYACSQVPGGWAAQKIGGRKVL 77 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-----~~~g~~-~s~~~~~~~~~~~~~g~l~dr~Grr~~l 77 (439)
+++....+..+..+..+.......-..+.+.+.+..+-.. ...|.. .++-.....+..++.+.+.|+.|.|+.+
T Consensus 4 ~~~~~~~v~~lg~g~~~~f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~l 83 (461)
T KOG3098|consen 4 RRFELLNVLMLGFGFLFLFTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWAL 83 (461)
T ss_pred ccchhheeeehhhhHHHHhHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHH
Confidence 3344444445555555555555555666666555443221 123333 6677777889999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhh
Q 013609 78 LFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSL 157 (439)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 157 (439)
.++...+..-....-+- |-+.+++...+.|+|.+..+..--.+++|..++|++.+..++..+....+..+|..+...+
T Consensus 84 v~ga~~y~~f~~gfl~~--N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~ 161 (461)
T KOG3098|consen 84 VIGATCYAAFPLGFLFP--NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIY 161 (461)
T ss_pred HHHhHHHHHHHHHHHhc--chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheee
Confidence 99999998887766654 6788889999999999999999999999999999999999999888888888887664443
Q ss_pred hccc--------CCc-h----------hHHHHhHHHHHHHHHH--hhhccCCCCCCCCCCCcccccCccCcccchhhhhc
Q 013609 158 VKYN--------GPN-S----------VFNAEAALGGMWSLLW--FKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVD 216 (439)
Q Consensus 158 ~~~~--------~wr-~----------~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (439)
.... +-+ . ...+.+++..+..+.. ..+.|.+......+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~~~------------------- 222 (461)
T KOG3098|consen 162 FQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCKSSS------------------- 222 (461)
T ss_pred eEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchhhhhhhc-------------------
Confidence 3211 111 1 1111111111111111 1111111111000000
Q ss_pred cccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc---cchhhhhhHHHHHHHHHHHH
Q 013609 217 NGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQE---MGSSKMMPYLNMFIFSNIGG 293 (439)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~g 293 (439)
+....+......+++++|+...+....+..+....-.....|.-+.-....+.+. .+......+++.+++....+
T Consensus 223 --~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~ 300 (461)
T KOG3098|consen 223 --ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFS 300 (461)
T ss_pred --cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHH
Confidence 0001111122345677888877777766666665556666666554332222222 23333445566666666666
Q ss_pred HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhccc-CCh----------------hHHHHHHHHHHHhh-hccccc
Q 013609 294 VVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIF-RSS----------------NGAIFCSSIALGFL-ALGRAG 355 (439)
Q Consensus 294 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~-~~~~~~ 355 (439)
.+.+|..+.. ++..+.++..+..+..++.... +.. .......-+..|+. ......
T Consensus 301 ~l~~rir~fg-------~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~ 373 (461)
T KOG3098|consen 301 ILSKRIRGFG-------RKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQ 373 (461)
T ss_pred HHhhhhhhcc-------cCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHH
Confidence 6666654433 2335555555544444433221 100 01111111122222 233344
Q ss_pred ccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHH
Q 013609 356 FAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTG 391 (439)
Q Consensus 356 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g 391 (439)
.......+.|++|..+.++.-.-..++..++-...+
T Consensus 374 ~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 374 RYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456666777999999999888888887777655544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.1e-10 Score=117.86 Aligned_cols=148 Identities=14% Similarity=0.175 Sum_probs=123.9
Q ss_pred hHHHHHH-HHHhhCCCcc-chhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHH
Q 013609 28 FSIAYTA-AADAAGVNQS-SKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVAR 105 (439)
Q Consensus 28 ~~~~~~~-i~~~~~~s~~-~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r 105 (439)
....+|. +.+++|.+.. +.+++.+...++..++.++.|+++||+++|+.+.++.++.+++.++..+.. +.+.+++..
T Consensus 251 ~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 329 (1146)
T PRK08633 251 AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP-SLASVLVLF 329 (1146)
T ss_pred HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 3344454 4567899988 999999999999999999999999999999999999888888888888886 888888999
Q ss_pred HHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc-ccCCchhHHHHhHHHHH
Q 013609 106 LLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK-YNGPNSVFNAEAALGGM 176 (439)
Q Consensus 106 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~wr~~f~~~~~~~~~ 176 (439)
++.|++.+...+...+++.+..|+++||+++++.+....+|..+++.+++.+.. ..++...|++.+.+.++
T Consensus 330 ~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 330 FLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 999999999889999999999999999999999999999999888888776654 23455556655554443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-10 Score=103.88 Aligned_cols=178 Identities=18% Similarity=0.146 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHH
Q 013609 237 PVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNT 316 (439)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 316 (439)
....+++.......--+.+....+.. ++.+|.++...|++.....+...+++++.|++.||+.|++ ++.
T Consensus 34 ~l~il~~vnlmny~Dr~~iagv~~~v-~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~----------v~~ 102 (493)
T KOG1330|consen 34 TLVILCLVNLMNYADRYTIAGVLKEV-QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKR----------VIA 102 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHH-HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcce----------EEe
Confidence 34455566666666656665555544 3448999999999999999999999999999999999999 888
Q ss_pred HHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhc
Q 013609 317 VGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395 (439)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 395 (439)
+|..+-.++.+...+....+..+++=.+.........+.......|..| ++|+++.++.+....+|..+|-...+.+.+
T Consensus 103 vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~ 182 (493)
T KOG1330|consen 103 VGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS 182 (493)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc
Confidence 8888888888888777555555555444333334445666666777666 699999999999999999999888888888
Q ss_pred cccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 396 AAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
.. ..|++.|...+++.++..++.+++.+++
T Consensus 183 ~~----------~~Wr~af~~~avl~vi~~~L~~~f~~eP 212 (493)
T KOG1330|consen 183 LT----------FWWRWAFRGSAVLGVIVGLLVFLFVREP 212 (493)
T ss_pred Cc----------cceEEEEEeehHHHHHHHHHHHhhccCc
Confidence 77 3599999999999988888777766553
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=97.24 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH---hhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHH
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAAAD---AAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSST 87 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 87 (439)
.....+..++..........-.+.+.+ ++|.++++.+...+.+..+..++.+..+++.||+|+||.+.++..+..++
T Consensus 142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~ 221 (310)
T TIGR01272 142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL 221 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 333445555544344455555555554 36899999999999999999999999999999999999999888888877
Q ss_pred HhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhH
Q 013609 88 CFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167 (439)
Q Consensus 88 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f 167 (439)
.++....+ +... ...-.+.|++.+..+|...+...+..|+ +.+++.++. ....+|..+.|++.|.+.|..|.+..|
T Consensus 222 ~~l~~~~~-~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~ 297 (310)
T TIGR01272 222 SIGAALTH-GYVA-MWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAF 297 (310)
T ss_pred HHHHHHcC-CHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHH
Confidence 76666554 3332 2355588999999999999999998864 455666765 566789999999999999989988888
Q ss_pred HHHh
Q 013609 168 NAEA 171 (439)
Q Consensus 168 ~~~~ 171 (439)
++..
T Consensus 298 ~v~~ 301 (310)
T TIGR01272 298 ALPV 301 (310)
T ss_pred HHHH
Confidence 7544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=117.12 Aligned_cols=160 Identities=11% Similarity=0.071 Sum_probs=124.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHH-HhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCC
Q 013609 16 ISTCVCYIERVGFSIAYTAAA-DAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLD 94 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 94 (439)
++.+...+....+....|.+. +.+|.++.+.|++.+.+.++..++.++.|+++||.++++.+..+.++.+++.+..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (1140)
T PRK06814 232 LGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFA 311 (1140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhc
Confidence 333333333344444566654 4579999999999999999999999999999999888777666666655555433332
Q ss_pred --------------------cchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhh
Q 013609 95 --------------------PNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFL 154 (439)
Q Consensus 95 --------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 154 (439)
+ +.+.+++.-++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~ 390 (1140)
T PRK06814 312 SSSVPAEPAQLKSILVFLSKR-HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL 390 (1140)
T ss_pred ccccccccccccchhhhhccc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence 4 6778888899999999999999999999999999999999999999999999999999
Q ss_pred hhhhc-ccCCchhHHHHhHHHHH
Q 013609 155 PSLVK-YNGPNSVFNAEAALGGM 176 (439)
Q Consensus 155 ~~l~~-~~~wr~~f~~~~~~~~~ 176 (439)
+.+.+ ..+....+++.+...++
T Consensus 391 g~l~~~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 391 ALLQALGFSIPWIILFIALANLI 413 (1140)
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 88874 45666666655554444
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=95.34 Aligned_cols=163 Identities=28% Similarity=0.417 Sum_probs=133.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCc--cchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhh
Q 013609 14 TFISTCVCYIERVGFSIAYTAAADAAGVNQ--SSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWL 91 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 91 (439)
.....+....+........+.+.++++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+......+.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 86 (338)
T COG0477 7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL 86 (338)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence 344445555777788888888888888766 488999999999999999999999999999988888887666666777
Q ss_pred cCCcc-hHHHHHHHHHHHhhhcccchhhHHHHhhhccCC-cccchhhHHHhh-hhhHHHHHHhhhhhhhhcc--cCCchh
Q 013609 92 KLDPN-NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPP-HERSRSVSLTTS-GMYLGAAMGMLFLPSLVKY--NGPNSV 166 (439)
Q Consensus 92 ~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~--~~wr~~ 166 (439)
++..+ +.+.+++.|..+|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+... .+||..
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (338)
T COG0477 87 ALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA 166 (338)
T ss_pred HhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 77752 499999999999999999999999999999987 688999999888 5888889998777776654 579987
Q ss_pred HHHHhHHHHH
Q 013609 167 FNAEAALGGM 176 (439)
Q Consensus 167 f~~~~~~~~~ 176 (439)
|.........
T Consensus 167 ~~~~~~~~~~ 176 (338)
T COG0477 167 FLLAALLGLL 176 (338)
T ss_pred HHHHHHHHHH
Confidence 7666655543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-10 Score=98.34 Aligned_cols=147 Identities=20% Similarity=0.150 Sum_probs=118.9
Q ss_pred hCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHH
Q 013609 267 LQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIAL 346 (439)
Q Consensus 267 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (439)
.+-+..+.|++++...+.+++.+++.|.+.||+|+|- .+.+|+.++....+++.+.++.+..+..=.+-.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~i----------pm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQg 170 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKI----------PMVAGLFVMFLSTILFAFGNSYPMLFVARSLQG 170 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhcccc----------HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhh
Confidence 4456778899999999999999999999999999999 899999999999999999877765544433322
Q ss_pred HhhhcccccccccccccCC--ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHH
Q 013609 347 GFLALGRAGFAVNHMDIAP--RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILS 424 (439)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (439)
....+....-....++..| ++|++++|+.-.+..+|-.+||++.|.++|.. |++.+|+++++++++.
T Consensus 171 vgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-----------Gk~aPFlVL~~v~Lld 239 (464)
T KOG3764|consen 171 VGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-----------GKSAPFLVLAIVLLLD 239 (464)
T ss_pred hhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-----------CCcCcHHHHHHHHHHH
Confidence 2223333333444455555 36899999999999999999999999999998 8999999999999988
Q ss_pred HHHHHHhccC
Q 013609 425 SFVFLLFSTG 434 (439)
Q Consensus 425 ~~~~~~~~~~ 434 (439)
..+.++..+.
T Consensus 240 ~~L~l~vi~p 249 (464)
T KOG3764|consen 240 GALQLLVIEP 249 (464)
T ss_pred HHHHHheeCc
Confidence 8877776554
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.3e-08 Score=94.19 Aligned_cols=154 Identities=17% Similarity=0.192 Sum_probs=125.2
Q ss_pred HHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccc-cCchHHHHHHHHHHHHHHhhhcCCcc-------hHHH
Q 013609 29 SIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQK-IGGRKVLLFSFVLWSSTCFWLKLDPN-------NVFI 100 (439)
Q Consensus 29 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~-------~~~~ 100 (439)
......+.+.+|.++++...+...+....-+.+.++|.++|+ +||++.+.++.++..+|.++.+++.. ....
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 344445566789999999999999999999999999999997 59999999999999999888776421 1234
Q ss_pred HHHHHHHHhhhcccchhhHHHHhhhccCCc---ccchhhHHHhhhhhHHHHHHhhhhhhhhcc-------cCCchhHHHH
Q 013609 101 LVVARLLVGVSQGFIFPSIHTVLAQWVPPH---ERSRSVSLTTSGMYLGAAMGMLFLPSLVKY-------NGPNSVFNAE 170 (439)
Q Consensus 101 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------~~wr~~f~~~ 170 (439)
.+++-.+..+|.|+.-|...+...|.++++ +|-+.+.++..+.++|..+++.+.+++.+. .+|...|.+.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP 167 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence 667778888999999999999999999754 367788999999999999999999888743 3699999998
Q ss_pred hHHHHHHHHHHh
Q 013609 171 AALGGMWSLLWF 182 (439)
Q Consensus 171 ~~~~~~~~~~~~ 182 (439)
++..++..+...
T Consensus 168 ~i~m~ia~lvf~ 179 (654)
T TIGR00926 168 AILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHH
Confidence 888777655544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=86.38 Aligned_cols=157 Identities=17% Similarity=0.119 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHH-
Q 013609 9 LIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSST- 87 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~- 87 (439)
+.+.+++..+.+..+.....++ ...++.+|+|+.+.+.+.+.-..-.++.+++.|.++||+|++-..+.+..+..+.
T Consensus 267 w~~~iicv~yyva~fPFi~lg~--~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~ 344 (459)
T KOG4686|consen 267 WVLVIICVLYYVAWFPFITLGP--MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLG 344 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhH--HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHH
Confidence 3444455555444443333222 2367899999999999999988999999999999999999998877765554443
Q ss_pred HhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC---Cc
Q 013609 88 CFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG---PN 164 (439)
Q Consensus 88 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~---wr 164 (439)
-....|+ ++.=.+.-.+.|...+.........++...|+++.|++.|..+...++|..+-|++++.+.++-| |-
T Consensus 345 H~~l~Ft---~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~l 421 (459)
T KOG4686|consen 345 HSGLFFT---FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNL 421 (459)
T ss_pred hhhHHhh---hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhH
Confidence 3333332 22334566777887776655577788888999999999999999999999999999999998544 44
Q ss_pred hhHHHH
Q 013609 165 SVFNAE 170 (439)
Q Consensus 165 ~~f~~~ 170 (439)
-.|.+.
T Consensus 422 e~ffl~ 427 (459)
T KOG4686|consen 422 EAFFLI 427 (459)
T ss_pred HHHHHH
Confidence 444443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-09 Score=95.98 Aligned_cols=182 Identities=16% Similarity=0.161 Sum_probs=140.9
Q ss_pred hhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CcccccchhhhhhHHHHHHHHHHHHHHHHHh-hhccc
Q 013609 231 RIVVN-LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQ----LSLQEMGSSKMMPYLNMFIFSNIGGVVADHL-ITKRI 304 (439)
Q Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~ 304 (439)
..+++ |.++.+...-+.--+++|++...+-.|+....+ +|++++..++..+....-...+++|+++||+ |+|+
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~- 93 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR- 93 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-
Confidence 44554 456777778888899999999999999988888 9999988877777777778889999999995 6666
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhhcccC--ChhH-HHHHHHHHHHhhhcccccccccccccC-C--ChhhHHHHHHHHH
Q 013609 305 LSVTRTRKFLNTVGFMVASIALMALPIFR--SSNG-AIFCSSIALGFLALGRAGFAVNHMDIA-P--RYAGIVMGISNTA 378 (439)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~g~~~~~ 378 (439)
.+..+.++.+++.+++.... .... .+...++..+. +..=+..+....+.. | .+|-.++++..+.
T Consensus 94 ---------tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~-Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~ 163 (498)
T COG3104 94 ---------TIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGT-GLFKPNISSLLGELYPKDDPRRDGGFTLFYMG 163 (498)
T ss_pred ---------HHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcc-ccccccHHHHHHHhcCCCCcccCCCccEEEEE
Confidence 88889999999998888774 2333 33333333333 333344455555443 3 2488889999999
Q ss_pred hhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccC
Q 013609 379 GTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 379 ~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
.++|+.++|.+.+++.++. +|+..|...++-..++.+.++..+|.
T Consensus 164 iNiGsl~~p~i~~~~~~~~-----------g~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 164 INIGSLIAPIITGLLAINY-----------GWHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred eehHHHHHHHHHHHHHHhh-----------CHHHHHHHHHHHHHHHHHHHHHccch
Confidence 9999999999999999998 89999999999999999988887754
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-09 Score=101.51 Aligned_cols=147 Identities=16% Similarity=0.238 Sum_probs=106.6
Q ss_pred hhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhccc--CChhHHHHHHH
Q 013609 266 GLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIF--RSSNGAIFCSS 343 (439)
Q Consensus 266 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 343 (439)
.++++..+.|.+.+...++..+++++.|++.||+++|+ .+..+.++..+..++.... .+....+..-+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~----------~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 139 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKW----------SIGIGMFLSSVISIVIPWAAGGGIALVVFCRV 139 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcch----------hhHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 46788889999999999999999999999999999999 7777777666665554332 22222222222
Q ss_pred HHHHhhhccccccccccccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHH
Q 013609 344 IALGFLALGRAGFAVNHMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCI 422 (439)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (439)
+.....+...+.......+. ++++|+++.|+.+....+|..++|.+.+.+.+.. .+|+..|++.++..+
T Consensus 140 ~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~----------~gw~~~f~i~~~~~~ 209 (465)
T TIGR00894 140 IQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW----------GGWPMIFYVFGIVGC 209 (465)
T ss_pred HHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------CCCCeehhhhhHHHH
Confidence 22222233334444455554 4589999999999999999999999999998873 279999999888777
Q ss_pred HHHHHHHHhc
Q 013609 423 LSSFVFLLFS 432 (439)
Q Consensus 423 ~~~~~~~~~~ 432 (439)
+..++.+...
T Consensus 210 ~~~~~~~~~~ 219 (465)
T TIGR00894 210 AWSLLWFVFP 219 (465)
T ss_pred HHHHHHHHHh
Confidence 6666555543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=100.85 Aligned_cols=173 Identities=16% Similarity=0.099 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhc
Q 013609 251 ALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALP 330 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
...++....-.-++++++++..+.|++.+...++..++.++.+++.||.+||+ .+.++.++.+++.+++.
T Consensus 47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~----------~i~~g~ll~~lg~ll~a 116 (633)
T TIGR00805 47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI----------VIGIGCAIMGLGSFLLS 116 (633)
T ss_pred HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce----------EEEecHHHHHHHHHHHh
Confidence 33344433333445569999999999999999999999999999999999999 77777777777776654
Q ss_pred ccC-------------------------------------------------C-hhHHHHHHHHHHHhh-hccccccccc
Q 013609 331 IFR-------------------------------------------------S-SNGAIFCSSIALGFL-ALGRAGFAVN 359 (439)
Q Consensus 331 ~~~-------------------------------------------------~-~~~~~~~~~~~~~~~-~~~~~~~~~~ 359 (439)
..+ + ....+...-+..|.+ +...+....+
T Consensus 117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~ 196 (633)
T TIGR00805 117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISY 196 (633)
T ss_pred ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchh
Confidence 431 0 011111111122221 2223334455
Q ss_pred cccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccc---------cCCC--CcccchhHHHHHHHHHHHHHHH
Q 013609 360 HMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTY---------SDLS--SPESWRAVFFIPGLLCILSSFV 427 (439)
Q Consensus 360 ~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~ 427 (439)
..|. ++++|+...|+.+....+|..+|+.+.+.+.+...... ++.+ ..+.|+..|++.+++.++..+.
T Consensus 197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 55899999999999999999999999999886542110 0000 1124677788887777766655
Q ss_pred HHHhcc
Q 013609 428 FLLFST 433 (439)
Q Consensus 428 ~~~~~~ 433 (439)
.+.+++
T Consensus 277 l~~~p~ 282 (633)
T TIGR00805 277 FFFFPK 282 (633)
T ss_pred HHhCcc
Confidence 555543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-08 Score=96.53 Aligned_cols=156 Identities=13% Similarity=0.172 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 013609 252 LYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPI 331 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
.+.+..+.|.. ++.+|+|..+.+.+..... ......+..|++.||+|+|+ ++.++.++..++.++.+.
T Consensus 43 ~y~fsv~s~~L-~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~----------vllig~ll~~iG~ll~al 110 (591)
T PTZ00207 43 MYAFNLISGAM-QARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRP----------IFVLSMTVFCLGTLLFAL 110 (591)
T ss_pred HHHHHHHHHHH-HHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHH----------HHHHHHHHHHHHHHHHHH
Confidence 34555556654 5569999999988776533 33355667899999999999 888888888888877776
Q ss_pred c------CChhHHHHHH-HHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCC
Q 013609 332 F------RSSNGAIFCS-SIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDL 404 (439)
Q Consensus 332 ~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~ 404 (439)
. ++.+...+.. +.+.+..... +.......+.+|++||.+.|+......+|+++.+.+...+.+ .
T Consensus 111 a~~~~i~~s~~~l~l~r~l~G~G~~~~~-~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~------- 181 (591)
T PTZ00207 111 TFQEVIEGSVVRLSVYNGLMTLGCMLFD-LGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D------- 181 (591)
T ss_pred HhcccccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------
Confidence 4 2333222222 2232222222 223334455678999999999999999999875555555544 2
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 405 SSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
+++..|++.+++.++..++...+.
T Consensus 182 ----~~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 182 ----NTSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHhhe
Confidence 456677777766666555554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=94.00 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHh-----hhccccchhhhhHHHHHHHHHHHHHHHhh
Q 013609 254 VLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHL-----ITKRILSVTRTRKFLNTVGFMVASIALMA 328 (439)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (439)
......|.+.++ .|.|..+.+..... .+...+ .++.|.+.||+ |||| .++..+.+..++....
T Consensus 6 ~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~---------~~l~~~~~~~~~~~~~ 73 (356)
T TIGR00901 6 LVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRR---------SWLVLTQVLLLSLLLI 73 (356)
T ss_pred hHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccH---------HHHHHHHHHHHHHHHH
Confidence 345567888887 79999999987544 344443 88999999998 4444 3445555555555444
Q ss_pred hcccCC---hhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCC
Q 013609 329 LPIFRS---SNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDL 404 (439)
Q Consensus 329 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~ 404 (439)
+.+.++ .+......++.........+.......| .++|+|+.+.|+.....++|..+++.+.+.+.+..+..+
T Consensus 74 l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~--- 150 (356)
T TIGR00901 74 LSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT--- 150 (356)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---
Confidence 444422 1112222112222222233344444445 456899999999999999999999999999888762100
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHhccC
Q 013609 405 SSPESWRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
....+|+..|++.++..+++.+..++..++
T Consensus 151 ~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e 180 (356)
T TIGR00901 151 GLITLWGYIFFWTALLILPGLLVTLFLAKE 180 (356)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhccC
Confidence 112349999998888777766655544333
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-08 Score=94.16 Aligned_cols=189 Identities=11% Similarity=0.049 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHH----hhhccccchhhhhH
Q 013609 237 PVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH----LITKRILSVTRTRK 312 (439)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~~~ 312 (439)
++..+....+..++++.....+++.|+++ +|.+....+.+.....+..++..++.|+++|| +|||+
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr--------- 74 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR--------- 74 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH---------
Confidence 34455666666778888888889988876 89999999999999999999999999999995 88777
Q ss_pred HHHHHHHHHHHHHHhhhcccCChh-------------HH----HHHHHHHHHhhhcccccccccccccCC-Chh--hHHH
Q 013609 313 FLNTVGFMVASIALMALPIFRSSN-------------GA----IFCSSIALGFLALGRAGFAVNHMDIAP-RYA--GIVM 372 (439)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~ 372 (439)
..+..+.....+.+.++++.++.. .. +..+.+.-.......+...+...|..| ++| +.+.
T Consensus 75 p~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~ 154 (477)
T TIGR01301 75 PFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIAN 154 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHH
Confidence 344445666666666665543311 11 111111111222222333455556554 433 6899
Q ss_pred HHHHHHhhhhHHHHHHHHHHh--hcccccc--ccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 373 GISNTAGTLAGIVGVDMTGKL--LEAAKTT--YSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 373 g~~~~~~~~g~~i~~~~~g~l--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
++.+...++|+.+++.+.+.. .+..+-. .....-..+++..|++.+++.+++.+...+..||+
T Consensus 155 ~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 155 AYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 999999999999999988865 2211100 00111223788899999988888888887766554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-09 Score=87.26 Aligned_cols=344 Identities=16% Similarity=0.147 Sum_probs=182.0
Q ss_pred HHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcc
Q 013609 34 AAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQG 113 (439)
Q Consensus 34 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 113 (439)
.+-++++....|+|.+.-...-..++...+.|.++|+-|||+.-+.-++-+.+.++ .-.++ +|-.++++|++-|+..+
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSp-qYkVLmVGR~LGGiaTs 139 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSP-QYKVLMVGRVLGGIATS 139 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCC-ceEEEeehhhhhhHHHH
Confidence 34456788888999988888888889999999999999999988777777666654 45676 89999999999999998
Q ss_pred cchhhHHHH-hhhccCCcccchhhHHHh--------hhhhHHHHHHhhhhhhhhccc--CCchhHHHHhHHHHHHHHHHh
Q 013609 114 FIFPSIHTV-LAQWVPPHERSRSVSLTT--------SGMYLGAAMGMLFLPSLVKYN--GPNSVFNAEAALGGMWSLLWF 182 (439)
Q Consensus 114 ~~~~~~~~~-i~~~~~~~~r~~~~~~~~--------~~~~~g~~~g~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~ 182 (439)
....+--++ ++|.. ++|+.---+.. .++.+-.+++.+.+..+.+.+ |.-.+|-..+....+...+.+
T Consensus 140 LLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 140 LLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred HHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 887777776 45654 33442222211 233444455555666666644 444555544333222222222
Q ss_pred hhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHH-HHHHH
Q 013609 183 KYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLM-NWLPT 261 (439)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 261 (439)
.--.|.-.+..++. .-.++.+...+.+..|+++..+.-+..+....++.+. .|.|.
T Consensus 218 ~~W~ENygdps~~k-----------------------dlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPa 274 (454)
T KOG4332|consen 218 SSWSENYGDPSENK-----------------------DLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPA 274 (454)
T ss_pred hhhhhccCChhhhH-----------------------HHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeeccc
Confidence 11111111110000 1112233344556677777665555555444444433 33332
Q ss_pred HHHHhhCCcccc--cchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhc----ccC--
Q 013609 262 YFELGLQLSLQE--MGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALP----IFR-- 333 (439)
Q Consensus 262 ~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-- 333 (439)
. .-++.+ -|.+++...+.+++|+-+..++..|-..|. + ..+.+.+.+....+.+.. ..+
T Consensus 275 L-----spn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~v---e-----~ymqivf~vs~a~l~Lpilt~~vsP~k 341 (454)
T KOG4332|consen 275 L-----SPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKV---E-----SYMQIVFLVSIAALLLPILTSSVSPSK 341 (454)
T ss_pred C-----CCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCccc---c-----hHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 2 111222 366666666777777766665554433332 1 133333333333332221 112
Q ss_pred -ChhHHHHHHHHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccch
Q 013609 334 -SSNGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWR 411 (439)
Q Consensus 334 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~ 411 (439)
++...++.++..=.+.+...|...-.-..+-| +.|++.+-+...--++-..+ .+++.... ..+.+-+
T Consensus 342 es~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvCl------vLynlh~~-----~~p~~tr 410 (454)
T KOG4332|consen 342 ESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCL------VLYNLHVD-----AFPTTTR 410 (454)
T ss_pred CCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhh------hheecccc-----cCccccc
Confidence 22333444444434445555555555444444 67876554443332222222 12221110 0123455
Q ss_pred hHHHHHHHHHHHHHHHH
Q 013609 412 AVFFIPGLLCILSSFVF 428 (439)
Q Consensus 412 ~~~~~~~~~~~~~~~~~ 428 (439)
..|-++..+..++.+..
T Consensus 411 ~mf~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 411 NMFGICSAFLFVASILQ 427 (454)
T ss_pred hhhhhhHHHHHHHHHHH
Confidence 67777777776665544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-09 Score=101.51 Aligned_cols=148 Identities=15% Similarity=0.065 Sum_probs=110.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHH-HhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCC
Q 013609 16 ISTCVCYIERVGFSIAYTAAA-DAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLD 94 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 94 (439)
+..++............|.+. +.+|.++...++......++..++.++++++.||+|+|+++.++.++..++.+...+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~ 314 (448)
T PRK09848 235 IGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV 314 (448)
T ss_pred HHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 333334444344444455443 3456555444444444467788899999999999999999999998888887777665
Q ss_pred c-chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCc-------ccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC
Q 013609 95 P-NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPH-------ERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 95 ~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 163 (439)
+ ++++.+.+..++.|+|.+...+...++.+|..|.+ ++|...+..+....+|..+|+.+.+.+.+..|+
T Consensus 315 ~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 315 SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3 26777778888999999999999999999988754 358899999999999999999999888765555
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.1e-08 Score=92.95 Aligned_cols=176 Identities=11% Similarity=0.066 Sum_probs=115.0
Q ss_pred hhcchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccch
Q 013609 232 IVVNLPVWAIVVNNFTFHY----ALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSV 307 (439)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 307 (439)
.+++|+++..+....+... ........++...++ .|-+ ....++.....+...+..++.|+++|.+|||.
T Consensus 36 ~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~---- 109 (599)
T PF06609_consen 36 YYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY---- 109 (599)
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchH----
Confidence 3456666655443333322 222223445555555 6765 44557777888899999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCC-ChhhHHHHHHHHHhhhhHHHH
Q 013609 308 TRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVG 386 (439)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~ 386 (439)
..+.+.++..++.++....++....+....+.....+.... ......|..| +.|..+.++.....-....++
T Consensus 110 ------~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~ 182 (599)
T PF06609_consen 110 ------FFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWIS 182 (599)
T ss_pred ------HHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhccc
Confidence 99999999999999998888776666554443332333222 2333455444 788887776665544444566
Q ss_pred HHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 387 VDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 387 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
|.+...+..+. +||+.|++..+...++.+...++
T Consensus 183 ~~ia~~~~~~~-----------~WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 183 PLIAQLFAAHS-----------GWRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred HHHHHHhccCC-----------CcchHHHHHHHHHHHHHHHHHHH
Confidence 66666554443 89999999888777766554443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.9e-07 Score=80.24 Aligned_cols=360 Identities=12% Similarity=-0.004 Sum_probs=205.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhccccccccc-----ccCchHHHHH---
Q 013609 8 YLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQ-----KIGGRKVLLF--- 79 (439)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~~--- 79 (439)
...+..+.+.+.+.+.-.+... .+|.+.+.=|.|.++.+...-++. -....++|.++.| |+||||.-+.
T Consensus 30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q 106 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQ 106 (510)
T ss_pred hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehH
Confidence 3445666677888888888777 899998877888887765433321 1234578899999 9999986543
Q ss_pred ---HHHHHHHHHhhh------cCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHH
Q 013609 80 ---SFVLWSSTCFWL------KLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMG 150 (439)
Q Consensus 80 ---~~~~~~~~~~~~------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 150 (439)
|.++..++.-.- +-.+ +...+...-++.-+..+.-..+.-.+.-....+++.|-+......+.+.|..++
T Consensus 107 ~llG~~mllLs~~v~~~~g~ng~~p-~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~ 185 (510)
T KOG3574|consen 107 YLLGLFMLLLSYLVDRGLGGNGGLP-NVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG 185 (510)
T ss_pred HHHHHHHHHHhhCCCcccccCCCCc-chHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence 444333332211 1122 444444444556666676777777787778888888887777777777777766
Q ss_pred hhhhhhhhc-------ccCCc---------hhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhh
Q 013609 151 MLFLPSLVK-------YNGPN---------SVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVK 214 (439)
Q Consensus 151 ~~~~~~l~~-------~~~wr---------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (439)
..+--.+.. ..+|. .-.++.+.+.++...+..+..+|.+++..++ +
T Consensus 186 ~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e----~-------------- 247 (510)
T KOG3574|consen 186 NVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEE----L-------------- 247 (510)
T ss_pred cceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh----h--------------
Confidence 654333322 11232 2344555666665556655554444331110 0
Q ss_pred hccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHH
Q 013609 215 VDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGV 294 (439)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 294 (439)
+...++...-++++++-|.+...+......-.++.+-....+.-+.| .|.+..+.+.+..+..-.+++. +.
T Consensus 248 ----~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l----~~ 318 (510)
T KOG3574|consen 248 ----ELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIAL----PL 318 (510)
T ss_pred ----hcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhh----hh
Confidence 01112222344677888888888888888888888888888888888 7999888877665444444444 44
Q ss_pred HHHHhhhccccchhhhhHHHHHHHHHHHHHH-HhhhcccCC----hh-HHHHHHHHHHH----hhh-ccccccccccccc
Q 013609 295 VADHLITKRILSVTRTRKFLNTVGFMVASIA-LMALPIFRS----SN-GAIFCSSIALG----FLA-LGRAGFAVNHMDI 363 (439)
Q Consensus 295 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~-~~~~~~~~~~~----~~~-~~~~~~~~~~~~~ 363 (439)
...|+..++.......|....-+........ ....+.... .. ...++.+.... +.. .............
T Consensus 319 ~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqis 398 (510)
T KOG3574|consen 319 YIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQIS 398 (510)
T ss_pred hheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC
Confidence 4444433221112222222222222222211 111111111 01 11111111111 111 1112222233445
Q ss_pred CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccc
Q 013609 364 APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAK 398 (439)
Q Consensus 364 ~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 398 (439)
+|...|+.+.+.|+..++|+---..+..++.|...
T Consensus 399 dp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 399 DPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred CcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 67889999999999999999888888888888654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.5e-09 Score=90.23 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=100.4
Q ss_pred hhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcc-h--HHHHHHHHHHHhhhcccchhhHHHHhhhccC
Q 013609 52 TFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPN-N--VFILVVARLLVGVSQGFIFPSIHTVLAQWVP 128 (439)
Q Consensus 52 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 128 (439)
+.++.-..|.++.+.+.||+|||+.|..+.+++++..++...+.. | -.++..+|++ .++.+.+.+.|..|.+|
T Consensus 389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyP 464 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYP 464 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccc
Confidence 345567788899999999999999999999999998887766642 2 2233455554 44456677899999999
Q ss_pred CcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccCC
Q 013609 129 PHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDP 188 (439)
Q Consensus 129 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~ 188 (439)
.+-|+...|..+...-+|.++.|.++ +....+-..+..+.+...++..+...+++-|+
T Consensus 465 TavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 465 TAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 99999999999999999999999998 33334555667777777777777766664443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=95.26 Aligned_cols=153 Identities=12% Similarity=0.138 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhh
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFW 90 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 90 (439)
...+.+..++............+.+.++.--+++..+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.++
T Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~ 306 (428)
T PF13347_consen 227 FRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLL 306 (428)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHH
Confidence 33445556666666666676777766664334577888888999999999999999999999999999999999999988
Q ss_pred hcCCc-chHHHHHHHHHHHhhhcccchhhHHHHhhhccCC-------cccchhhHHHhhhhhHHHHHHhhhhhhhhcccC
Q 013609 91 LKLDP-NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPP-------HERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG 162 (439)
Q Consensus 91 ~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 162 (439)
..+.+ +|.+.+++.-++.|++.+...+...++++|..+. ++.|...|..+....+|..+++.+.+.+.+..|
T Consensus 307 ~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 307 LFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 87774 4899999999999999999999999999998873 345888999999999999999999888876554
Q ss_pred C
Q 013609 163 P 163 (439)
Q Consensus 163 w 163 (439)
+
T Consensus 387 y 387 (428)
T PF13347_consen 387 Y 387 (428)
T ss_pred c
Confidence 4
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6e-09 Score=100.10 Aligned_cols=148 Identities=14% Similarity=0.026 Sum_probs=109.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcC--
Q 013609 16 ISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKL-- 93 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-- 93 (439)
...++............+.+.++..-+++..+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~ 317 (473)
T PRK10429 238 GMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG 317 (473)
T ss_pred HHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444445555555544445566777777777889999999999999999999999888776655544321
Q ss_pred --CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccC-------CcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC
Q 013609 94 --DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVP-------PHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 94 --~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 163 (439)
.+++.+.+++.-++.|++.+...+...++++|..+ +++.|..++......-+|..+++.+.+.+.+..|+
T Consensus 318 ~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 318 LAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22367777788888999999999999999999965 23345588999999999999999999998875555
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=93.69 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=132.4
Q ss_pred HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhccc
Q 013609 35 AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGF 114 (439)
Q Consensus 35 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 114 (439)
-.+|++..+.-.|........+-.+.-++.+++.+|+|+-+++..++.+..+=.+.....+ |.|+.+-..+++|+..+.
T Consensus 397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~-n~W~vLPieilqgit~al 475 (618)
T KOG3762|consen 397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ-NPWMVLPIEILQGITHAL 475 (618)
T ss_pred HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc-CchheeeHHHHHHHHHHH
Confidence 3577787777788777778888888889999999999999999999999999999999997 999999999999999999
Q ss_pred chhhHHHHhhhccCCcccchhhHHHhh-hhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHh
Q 013609 115 IFPSIHTVLAQWVPPHERSRSVSLTTS-GMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182 (439)
Q Consensus 115 ~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~ 182 (439)
.+.+..+++++..||+-|..+.++.+. ..++|--+|.+++|.+.+.++=|..|.+.++.+++..++..
T Consensus 476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876 78899999999999999999999999999888877655443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.2e-08 Score=93.63 Aligned_cols=176 Identities=12% Similarity=0.078 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHH
Q 013609 246 FTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIA 325 (439)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (439)
+..+........+++.|+.+++|+++.++|.+..+.-+...+..++.|+++||.+.|. .+||+.+..+.+..++.
T Consensus 19 ~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-----Grrrp~il~~~~~~~i~ 93 (444)
T PRK09669 19 TACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-----GQFRPYLLWFAIPFGVV 93 (444)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-----CCcchhHHHHHHHHHHH
Confidence 3444555667888999999999999999999999999999999999999999965443 22334565565555555
Q ss_pred HhhhcccCC---h---hHHHH-HHHHHHHhhhcccccccccccccC--CChhhHHHHHHHHHhhhhHHHHHHHHHHhhcc
Q 013609 326 LMALPIFRS---S---NGAIF-CSSIALGFLALGRAGFAVNHMDIA--PRYAGIVMGISNTAGTLAGIVGVDMTGKLLEA 396 (439)
Q Consensus 326 ~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 396 (439)
..+....++ . .+... ..+...+... ......+...|.. +++|.+.++......++|+.+++.+...+...
T Consensus 94 ~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~-~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~ 172 (444)
T PRK09669 94 CLLTFYTPDFGATGKIIYACVTYILLSLVYTA-INVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDI 172 (444)
T ss_pred HHHHHhCCCCCcchHHHHHHHHHHHHHHHHHh-hcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333322 1 11111 1222222322 2233444455543 37899999999999999998888776666554
Q ss_pred ccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 397 AKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
.+.++ ...+|+..+.+.+++.++..+..+..
T Consensus 173 ~~~~~----~~~g~~~~~~i~~ii~~v~~~~~~~~ 203 (444)
T PRK09669 173 LGKGD----EQKGYFYAMMVMGLLGVVLFFCCFFM 203 (444)
T ss_pred hCCCc----hhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 42111 11367777777777766665554444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-08 Score=96.23 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=110.7
Q ss_pred HhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCC----------cchHHHHHHHHH
Q 013609 37 DAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLD----------PNNVFILVVARL 106 (439)
Q Consensus 37 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~ 106 (439)
+++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++....... + +.+..+..-+
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~-~~~~~~~~~~ 359 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGIS-DEVFVLGDSI 359 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCC-CeeeeeehhH
Confidence 4689999999999999999999999999999999999999999999999888654311 3 4445666778
Q ss_pred HHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC
Q 013609 107 LVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG 162 (439)
Q Consensus 107 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 162 (439)
+.+++.+........++.+..|+++++...++.+...++|..+++.+++.+.++.|
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88999898889999999999999999999999999999999999999999988766
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-07 Score=89.73 Aligned_cols=181 Identities=10% Similarity=0.047 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHH
Q 013609 244 NNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVAS 323 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (439)
.-+..+..+.....|+..|+.+..|+++..+|.+..+.-+...+.-++.|.++||...|. .+|++.+..+.+..+
T Consensus 17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~-----Gr~rp~il~g~i~~~ 91 (460)
T PRK11462 17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRW-----GKFRPWVLFGALPFG 91 (460)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCC-----CCcchhHhHHHHHHH
Confidence 334455666777789999999999999999999999999999999999999999876554 334556666766666
Q ss_pred HHHhhhcccCC--hh----HHHH-HHHHHHHhhhcccccccccccccC--CChhhHHHHHHHHHhhhhHHHHHHHHHHhh
Q 013609 324 IALMALPIFRS--SN----GAIF-CSSIALGFLALGRAGFAVNHMDIA--PRYAGIVMGISNTAGTLAGIVGVDMTGKLL 394 (439)
Q Consensus 324 ~~~~~~~~~~~--~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 394 (439)
+...++...+. .. +... ..+...+. ......+.+...|.. +++|++.++......++|+.+++.+...+.
T Consensus 92 i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~-t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv 170 (460)
T PRK11462 92 IVCVLAYSTPDLSMNGKMIYAAITYTLLTLLY-TVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLV 170 (460)
T ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH-HHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555543332 11 1111 11122222 222334444555544 479999999999999999988888877666
Q ss_pred ccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccC
Q 013609 395 EAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
+..++.+ ...+|.....+.+++.+++..+.+...||
T Consensus 171 ~~~g~~~----~~~g~~~~~~i~~ii~~i~~~i~~~~~kE 206 (460)
T PRK11462 171 NLIGGDN----KPLGFQGGIAVLSVVAFMMLAFCFFTTKE 206 (460)
T ss_pred HHhCCCc----hhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence 5442111 11356666666666665555554443333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-07 Score=82.58 Aligned_cols=166 Identities=16% Similarity=0.092 Sum_probs=130.2
Q ss_pred HHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhccccccccccc-CchHHHHHHHHHHHHHHhhhcCCcch
Q 013609 19 CVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKI-GGRKVLLFSFVLWSSTCFWLKLDPNN 97 (439)
Q Consensus 19 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~ 97 (439)
-+.....+..-.=+|.+..|-|+|..+.|+..+...+......+....+++|. ++|+......+++.++...+.+.|.
T Consensus 218 GlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~- 296 (395)
T COG2807 218 GLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG- 296 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-
Confidence 33444555666678999999999999999999999999999999999999965 6777778888888888877777763
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHHhhhccCC-cccchhhHHHhhhhhHHHHHHhhhhhhhhccc-CCchhHHHHhHHHH
Q 013609 98 VFILVVARLLVGVSQGFIFPSIHTVLAQWVPP-HERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN-GPNSVFNAEAALGG 175 (439)
Q Consensus 98 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~ 175 (439)
-..++. -++.|+|.|...+.+..++.+..+. ++-++-.++.+....+=...||.+.|++.|.. +|+..++..+...+
T Consensus 297 ~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 297 QLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred hHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 222222 4899999999999999999998863 44556666666666666778999999998854 69999988888877
Q ss_pred HHHHHHhhhcc
Q 013609 176 MWSLLWFKYAT 186 (439)
Q Consensus 176 ~~~~~~~~~~~ 186 (439)
...+.-+..-|
T Consensus 376 ~m~i~Gl~a~r 386 (395)
T COG2807 376 LMLIFGLRAGR 386 (395)
T ss_pred HHHHHHhhcch
Confidence 77666655443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.8e-08 Score=83.84 Aligned_cols=383 Identities=11% Similarity=0.047 Sum_probs=219.0
Q ss_pred HhhCCCccch-hhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccc
Q 013609 37 DAAGVNQSSK-GTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFI 115 (439)
Q Consensus 37 ~~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 115 (439)
.+.|+++.|. .-+.-...-.+.+.-.+.=.+.|..-.|++++.-.+-......+.-+.+ +.+.+-+..+..|...+ .
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~-sV~~mQvlE~FyG~~tA-a 111 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGP-SVKAMQVLEFFYGPATA-A 111 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcC-CchheeeehhhcChHHH-H
Confidence 3445555443 2222333444555555566789988889988887666666667777776 89999999999998866 5
Q ss_pred hhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC--chhHHHHhHHHHHHHHHHhhhccCCCCCCC
Q 013609 116 FPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP--NSVFNAEAALGGMWSLLWFKYATDPPRSEH 193 (439)
Q Consensus 116 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w--r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (439)
..+.++++-+..+++++.++.+...+..-.|...|..++..+.....+ +..=.+.-.- ..+......++|..+++..
T Consensus 112 EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~-~~ia~~~A~fLP~v~rSl~ 190 (433)
T KOG3810|consen 112 EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAE-VTIAVLLALFLPRVKRSLY 190 (433)
T ss_pred HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHH-HHHHHHHHhhCCCCchhhh
Confidence 688889999999999999999999999999999999998888764333 3222222222 2223333345555554332
Q ss_pred CCCCcccccCccCcccchhhh-hccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Q 013609 194 PKASAAGFGESLLPMRDQKVK-VDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQ 272 (439)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 272 (439)
-+.++++....+.+....... .+..+........++.+..+||++..-.+-..+..++++-..++.-..-++. .-++.
T Consensus 191 f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~-~~~~~ 269 (433)
T KOG3810|consen 191 FHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEV-APNPA 269 (433)
T ss_pred hhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhh-CCCch
Confidence 211111111000000000000 0000000111123445667788877767777777777777766665555543 21111
Q ss_pred --ccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhh
Q 013609 273 --EMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLA 350 (439)
Q Consensus 273 --~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (439)
-.|..=++..+.++++.+..|.+.-...|. +..++.++.+..+..++.+....+.+...+...+.-....
T Consensus 270 ~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~--------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~ 341 (433)
T KOG3810|consen 270 NVYNGAVEAVSTLLGAIAALAAGYLNINWNRW--------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQ 341 (433)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHheeeccchh--------hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHh
Confidence 123333445555666667777664333222 2346667777777777777777776666555544433333
Q ss_pred cc-cccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHH
Q 013609 351 LG-RAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFL 429 (439)
Q Consensus 351 ~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (439)
.. ..+......+...|.-|...|+...+.-+-..+-.. .+.|..+.+-+...--.-|..-|.+.+++.+++.....
T Consensus 342 l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~---iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~ 418 (433)
T KOG3810|consen 342 LTITIATFQIARNLSSELFGLVFGINTFVALILQSILTL---IVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEY 418 (433)
T ss_pred hhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheE---EEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHH
Confidence 32 233344556677788899999887765554444333 33443322221111112356678888888888866555
Q ss_pred HhccC
Q 013609 430 LFSTG 434 (439)
Q Consensus 430 ~~~~~ 434 (439)
...++
T Consensus 419 ~~~~~ 423 (433)
T KOG3810|consen 419 LMCRR 423 (433)
T ss_pred HHhhc
Confidence 54443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-08 Score=86.37 Aligned_cols=115 Identities=18% Similarity=0.139 Sum_probs=89.5
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhh
Q 013609 270 SLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFL 349 (439)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (439)
+..-+|.+-+.+.+...+.++..|.++||+|||. ++.+|.+..++...+.+...+. ..+...=+..|..
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkp----------vll~c~~~va~s~ll~~~S~~F-~afv~aR~l~Gi~ 134 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKP----------VLLACLIGVALSYLLWALSRNF-AAFVLARFLGGIF 134 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchH----------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhc
Confidence 3445688888899999999999999999999999 8999999888888777777665 2222222233333
Q ss_pred hcccccccccccccC-CChhhHHHHHHHHHhhhhHHHHHHHHHHhhc
Q 013609 350 ALGRAGFAVNHMDIA-PRYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395 (439)
Q Consensus 350 ~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 395 (439)
-.......++..|+. +|+|+.+++.+++..++|-++||.+.|++..
T Consensus 135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 333444555666655 5899999999999999999999999999988
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=89.08 Aligned_cols=149 Identities=16% Similarity=0.225 Sum_probs=118.0
Q ss_pred hhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChh--HHHHH-H
Q 013609 266 GLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSN--GAIFC-S 342 (439)
Q Consensus 266 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~ 342 (439)
.+++++.+.+++.+....+.+++.+..+++.||+|.|+ +...+.++.+++.++.+...+.. ..+.. +
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~----------v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~ 136 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARR----------VFFISGLISALLTLLTPLAASIGFYLLLVLRF 136 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchH----------HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 46788889999999999999999999999999999999 99999999999988888764332 22222 2
Q ss_pred HHHHHhhhccccccccc-ccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHH
Q 013609 343 SIALGFLALGRAGFAVN-HMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLC 421 (439)
Q Consensus 343 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (439)
+.+++.+. ..+..... ..=.||++|++..++.....++|..++-++.|.+.+.. .||+.+|++.+++.
T Consensus 137 lqGl~~g~-~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~----------~GW~sifY~~g~~g 205 (466)
T KOG2532|consen 137 LQGLGQGV-LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS----------LGWPSIFYVFGIVG 205 (466)
T ss_pred HhHHHHhH-HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC----------CCCchHHHHHHHHH
Confidence 22333333 33444444 44466799999999999999999999999999999983 39999999999999
Q ss_pred HHHHHHHHHhccCC
Q 013609 422 ILSSFVFLLFSTGE 435 (439)
Q Consensus 422 ~~~~~~~~~~~~~~ 435 (439)
++-.++++.+.+++
T Consensus 206 ~i~~~~w~~~~~d~ 219 (466)
T KOG2532|consen 206 LIWFILWFLFYSDS 219 (466)
T ss_pred HHHHHHHHHHhcCC
Confidence 88888877765543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.8e-07 Score=79.19 Aligned_cols=169 Identities=15% Similarity=0.098 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhccc
Q 013609 253 YVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIF 332 (439)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
...+.-+-..+++.++.+..+++++......+..+.++..+++.||+++|+ -+..++.+.++++.++.-.
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~----------gi~lgL~l~avg~~lF~pA 98 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKA----------GIVLGLLLYAVGAALFWPA 98 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHH----------HHHHHHHHHHHHHHHHhhh
Confidence 344444555667779999999999999999999999999999999999999 8899999999999888643
Q ss_pred C---ChhHHHHH-HHHHHHhhhccccccccccccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccccc-----
Q 013609 333 R---SSNGAIFC-SSIALGFLALGRAGFAVNHMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYS----- 402 (439)
Q Consensus 333 ~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~----- 402 (439)
. +....+.. +.++.|.+. .......+.... +|+..+.-+.+...++.+|++++|.+.+.+..+.....-
T Consensus 99 a~~~~y~~FL~~lFila~Gi~~-LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~ 177 (422)
T COG0738 99 ASSKSYGFFLVALFILASGIGL-LETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQI 177 (422)
T ss_pred hhhhhHHHHHHHHHHHHhhhHH-HHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHH
Confidence 3 22222222 222333222 223333333444 456777888999999999999999999999884211000
Q ss_pred ---CCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 403 ---DLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 403 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
.......++.++...+..+++..+.....+
T Consensus 178 ~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k 210 (422)
T COG0738 178 LAIKGADASSVQFPYLILAGLLVLLAVLILLSK 210 (422)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 011123577788888877777666665555
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.67 E-value=3e-08 Score=68.26 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=74.2
Q ss_pred HHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHH
Q 013609 21 CYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFI 100 (439)
Q Consensus 21 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (439)
.++.+..+.|.+|.+++|.++|.++.|++.+.+.+||.++.+...++.++..+++.+..+.+...+..+.+++.. +++.
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~-~~~~ 82 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH-SFWL 82 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh-chHH
Confidence 467889999999999999999999999999999999999999999999998889999999999999999999986 6655
Q ss_pred H
Q 013609 101 L 101 (439)
Q Consensus 101 l 101 (439)
.
T Consensus 83 w 83 (85)
T PF06779_consen 83 W 83 (85)
T ss_pred H
Confidence 4
|
Note that many members are hypothetical proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-06 Score=80.52 Aligned_cols=184 Identities=12% Similarity=0.138 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHH
Q 013609 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMV 321 (439)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 321 (439)
...-+...........|+..|+.++.|+++..+|.++.+.=+...+.-++.|.++||..+|+ .++|+.+..+.+.
T Consensus 18 g~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~-----GrfRP~lL~g~ip 92 (467)
T COG2211 18 GLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRW-----GRFRPWLLWGAIP 92 (467)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccc-----ccccHHHHHHhHH
Confidence 34445566677778899999999999999999999999999999999999999999887666 4566677777666
Q ss_pred HHHHHhhhcccCC-------hhHHHHHHHHHHHhhhccccccccccccc--CCChhhHHHHHHHHHhhhhHHHHHHHHHH
Q 013609 322 ASIALMALPIFRS-------SNGAIFCSSIALGFLALGRAGFAVNHMDI--APRYAGIVMGISNTAGTLAGIVGVDMTGK 392 (439)
Q Consensus 322 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 392 (439)
.++...+....++ ....+...+...+......| +.+...+. .|++|.+..+.-....++|..+...+.+.
T Consensus 93 ~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniP-y~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~p 171 (467)
T COG2211 93 FAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIP-YGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPP 171 (467)
T ss_pred HHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCc-hhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555554442 11223334444444443333 33344443 35899999999999999999999999988
Q ss_pred hhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCC
Q 013609 393 LLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGE 435 (439)
Q Consensus 393 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (439)
+.+..++++ ...+|+....+.+++.++..+..++-.||+
T Consensus 172 lv~~~g~~~----~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 172 LVKLFGGGD----KALGYQGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred HHHHhCCCc----chhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 888775432 124777777777777777666666554443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-05 Score=74.52 Aligned_cols=380 Identities=12% Similarity=0.017 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHh--hCCCccchhhhhhhhhhhhhhhccccccccc-----ccCchHHHHH-----
Q 013609 12 ILTFISTCVCYIERVGFSIAYTAAADA--AGVNQSSKGTILSTFYYGYACSQVPGGWAAQ-----KIGGRKVLLF----- 79 (439)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~~----- 79 (439)
.++.+.+++.+.-.+......|.+.++ -+.|.+|.+...-+ ...+- ..++|.++.| |+||||..++
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l 80 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYL 80 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence 345566777777766665678888777 67788887664322 11111 2345555555 8999998654
Q ss_pred -HHHHHHHHHhh----------hcCCcc--------hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHh
Q 013609 80 -SFVLWSSTCFW----------LKLDPN--------NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTT 140 (439)
Q Consensus 80 -~~~~~~~~~~~----------~~~~~~--------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 140 (439)
|..+..++.-. -.+..+ +...+...-++.=+-.+.-..+.-.+.-....+++++.+..-..
T Consensus 81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt 160 (544)
T PF13000_consen 81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT 160 (544)
T ss_pred HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence 33333333332 001000 11122233223333334444555566666667788888877777
Q ss_pred hhhhHHHHHHhhhhhhhhcc-------------cC---CchhHHHHhHHHHHHHHHHhhhccCCCCCCC-CCCCcccccC
Q 013609 141 SGMYLGAAMGMLFLPSLVKY-------------NG---PNSVFNAEAALGGMWSLLWFKYATDPPRSEH-PKASAAGFGE 203 (439)
Q Consensus 141 ~~~~~g~~~g~~~~~~l~~~-------------~~---wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 203 (439)
.+.+.|..++..+--.+.+. .| -..-..+.+.+.++..+...++.+|+|..+. ++.+..+..+
T Consensus 161 vG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~ 240 (544)
T PF13000_consen 161 VGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSD 240 (544)
T ss_pred hHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccc
Confidence 77777777766554444320 11 1112234445555555666667777664332 1111111000
Q ss_pred ccCcccchhhhhcc--ccc---cccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhh
Q 013609 204 SLLPMRDQKVKVDN--GGS---AMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSK 278 (439)
Q Consensus 204 ~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 278 (439)
...+....+..+.+ .++ .-++.-..+.+++|-|++..+.+.....-.++..-......=+.| .|++.++.+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~ 319 (544)
T PF13000_consen 241 GKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLV 319 (544)
T ss_pred ccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHH
Confidence 00000000000000 001 111222334566788999888888888888877777777777777 799988877654
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhccccch-------------hh----------hhHHHH-HHH-HHHHHHHHhhhcccC
Q 013609 279 MMPYLNMFIFSNIGGVVADHLITKRILSV-------------TR----------TRKFLN-TVG-FMVASIALMALPIFR 333 (439)
Q Consensus 279 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-------------~~----------~~~~~~-~~~-~~~~~~~~~~~~~~~ 333 (439)
.+ .+...++.|+++.|+.+.+...+ +. .+.++. ..+ ++...++.......+
T Consensus 320 li----~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP 395 (544)
T PF13000_consen 320 LI----DFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFP 395 (544)
T ss_pred HH----hhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCC
Confidence 43 55555666666666544332110 00 011111 111 111122222222222
Q ss_pred ---Ch-hHHHHHHHHHHHhh----hccccccccc-ccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccc
Q 013609 334 ---SS-NGAIFCSSIALGFL----ALGRAGFAVN-HMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAK 398 (439)
Q Consensus 334 ---~~-~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 398 (439)
.. ......++..-.+. ........+. ....+|..-|+.+.+.|++.|+|+.--..+.=++.|...
T Consensus 396 ~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT 469 (544)
T PF13000_consen 396 SDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT 469 (544)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence 11 11111222211111 1112222222 334567899999999999999999887777777777653
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-09 Score=104.19 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhc----CCcch----H
Q 013609 27 GFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLK----LDPNN----V 98 (439)
Q Consensus 27 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~----~~~~~----~ 98 (439)
......+.+.++.+.++. -.......+...++.+....+.||+|||++++.+..+.++..+..+ ...++ -
T Consensus 271 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (451)
T PF00083_consen 271 FIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWS 348 (451)
T ss_pred cccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 334445667777776666 2222334455566777778999999999999999988888777664 11111 1
Q ss_pred HHHHHHHHHHhhhcc-cchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHH
Q 013609 99 FILVVARLLVGVSQG-FIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMW 177 (439)
Q Consensus 99 ~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~ 177 (439)
...++.-.+..++.+ ...+....+..|.+|.+.|++..++......++..+++.+...+.+..+-...+.+.+.++++.
T Consensus 349 ~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~ 428 (451)
T PF00083_consen 349 ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIA 428 (451)
T ss_pred cccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHH
Confidence 111122222212222 3456677888999999999999999999999999999988888777666345667777777777
Q ss_pred HHHHhhhccCCCCCC
Q 013609 178 SLLWFKYATDPPRSE 192 (439)
Q Consensus 178 ~~~~~~~~~~~~~~~ 192 (439)
.+..+++.||+....
T Consensus 429 ~i~~~~~lpET~g~~ 443 (451)
T PF00083_consen 429 IIFVYFFLPETKGKT 443 (451)
T ss_pred HhheeEEEeeCCCCC
Confidence 777788888877654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-05 Score=76.27 Aligned_cols=153 Identities=16% Similarity=0.064 Sum_probs=120.9
Q ss_pred hHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhccccccccccc-CchHHHHHHHHHHHHHHhhhcCCc-----------
Q 013609 28 FSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKI-GGRKVLLFSFVLWSSTCFWLKLDP----------- 95 (439)
Q Consensus 28 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~----------- 95 (439)
....+..+.++++.+...+.-..+.+.-......+.++.++|-| ||-+++.++.++..++..+..++.
T Consensus 57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 45667778889998888888888888888899999999999976 999999999888877753332211
Q ss_pred ---c----------hHHHHHHHHHHHhhhcccchhhHHHHhhhccC---Cc---ccchhhHHHhhhhhHHHHHHhhhhhh
Q 013609 96 ---N----------NVFILVVARLLVGVSQGFIFPSIHTVLAQWVP---PH---ERSRSVSLTTSGMYLGAAMGMLFLPS 156 (439)
Q Consensus 96 ---~----------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~g~~~g~~~~~~ 156 (439)
+ ....+..+.-+..+|.|+.-|...+.-+|-++ ++ ++...+.++....+.|..++..+..+
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 0 12466677777888999999999999999998 22 23477889999999999999988888
Q ss_pred hhcccCCchhHHHHhHHHHHHHHH
Q 013609 157 LVKYNGPNSVFNAEAALGGMWSLL 180 (439)
Q Consensus 157 l~~~~~wr~~f~~~~~~~~~~~~~ 180 (439)
.-+..+|.+.|.+..+...+..++
T Consensus 217 iq~~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred hhhcccceeeccHHHHHHHHHHHH
Confidence 878899999999887776654443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6e-07 Score=81.32 Aligned_cols=183 Identities=17% Similarity=0.026 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhh--------hhhh-hhhhhhhhcccccccccccCchHHHHH
Q 013609 9 LIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGT--------ILST-FYYGYACSQVPGGWAAQKIGGRKVLLF 79 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~--------~~s~-~~~~~~~~~~~~g~l~dr~Grr~~l~~ 79 (439)
+.+...+...|+.-...+..+.....+.++.++.+.+... ...+ ...++..+-.+...++|++|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5566777888888888888888888888888775544322 2222 233445577888999999999999999
Q ss_pred HHHHHHHHHhhhcCCcc---hHHHHHHHHHHHhh-hcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhh
Q 013609 80 SFVLWSSTCFWLKLDPN---NVFILVVARLLVGV-SQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLP 155 (439)
Q Consensus 80 ~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 155 (439)
+.+++.+..+..+...+ +-..+++.-.+..+ +.-+.......+-+|.+|.+-|+..-|+..+..-.|.++|...-.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 99999999999988863 11222222222222 222233455566789999999999999999999999999999988
Q ss_pred hhhc-----ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCC
Q 013609 156 SLVK-----YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSE 192 (439)
Q Consensus 156 ~l~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (439)
.+.+ ..+-|+.+++.+....+..+..+ +.||+..+.
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~ 504 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGKS 504 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeE-EeecccccC
Confidence 8888 67899999999988877665555 556766554
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00011 Score=69.68 Aligned_cols=282 Identities=6% Similarity=-0.012 Sum_probs=157.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhh-hhhhhcccccccccccCchHHHHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYY-GYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
..+..+..+.+..++..++.+..-..-..+.-+ ..+++.+..+=....+ +..+...+..+++||++|++++-+....+
T Consensus 21 ~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt-~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F 99 (491)
T PF03219_consen 21 SELKKFLPLALMFFFILFNYTILRDLKDTLVVT-AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPF 99 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEe-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334455666666666666554333322221111 1144555555554444 34556777899999999999988776665
Q ss_pred HHHHhhhcCC---------cc---------------------hHHHHHHHHHHHhhhcccchh-hHHHHhhhccCCcccc
Q 013609 85 SSTCFWLKLD---------PN---------------------NVFILVVARLLVGVSQGFIFP-SIHTVLAQWVPPHERS 133 (439)
Q Consensus 85 ~~~~~~~~~~---------~~---------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~ 133 (439)
.....+.++. ++ +.|.+.+.-+..-+-.....+ .-..+..|.++.+|-.
T Consensus 100 ~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAK 179 (491)
T PF03219_consen 100 LGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAK 179 (491)
T ss_pred HHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5544444432 11 112222222333222222222 3467788999999999
Q ss_pred hhhHHHhhhhhHHHHHHhhhhhhhhc---------ccCCchhHHHHh-HHHH--HHHHHHhhhccCCCCCCCCCCCcccc
Q 013609 134 RSVSLTTSGMYLGAAMGMLFLPSLVK---------YNGPNSVFNAEA-ALGG--MWSLLWFKYATDPPRSEHPKASAAGF 201 (439)
Q Consensus 134 ~~~~~~~~~~~~g~~~g~~~~~~l~~---------~~~wr~~f~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (439)
|..++++.+.++|.+++..+...+.+ ...|...+.... ++.+ +.........++...+.+...+.+
T Consensus 180 RfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~-- 257 (491)
T PF03219_consen 180 RFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSA-- 257 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhh--
Confidence 99999999999999999988888776 123553332221 1111 112222222222111110000000
Q ss_pred cCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc-c---chh
Q 013609 202 GESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQE-M---GSS 277 (439)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~---~~~ 277 (439)
..+++++.+....+.++.++|+|-+..+++...+++...+.+....-..+++.+. ++.+ . |..
T Consensus 258 ------------~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysafmG~~ 324 (491)
T PF03219_consen 258 ------------KKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSAFMGKF 324 (491)
T ss_pred ------------hcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHHHHHHH
Confidence 0000012223344667788899999888888888888888777766666666443 3333 2 334
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcc
Q 013609 278 KMMPYLNMFIFSNIGGVVADHLITKR 303 (439)
Q Consensus 278 ~~~~~~~~~~~~~~~g~l~d~~~~~~ 303 (439)
....++..++...+++.+.+|+|-+.
T Consensus 325 ~~~tGivtii~~~l~~~iir~~GW~~ 350 (491)
T PF03219_consen 325 SSWTGIVTIIMMFLSSNIIRRFGWRT 350 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 45556666666677778888877665
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-06 Score=67.29 Aligned_cols=106 Identities=18% Similarity=0.238 Sum_probs=90.1
Q ss_pred hhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCC
Q 013609 50 LSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPP 129 (439)
Q Consensus 50 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 129 (439)
.++......+..++.+.+.+++|.|+.++++.+.+.+-.... +-+ +.+.++.+-++.|++.+..++..-.++.+..++
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~-~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYP-NSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhh-hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 455666677788888899999999999999999988655544 445 789999999999999999999999999999999
Q ss_pred cccchhhHHHhhhhhHHHHHHhhhhhhh
Q 013609 130 HERSRSVSLTTSGMYLGAAMGMLFLPSL 157 (439)
Q Consensus 130 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l 157 (439)
++|++..++.......+.++|..+.-.+
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888887765444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.9e-06 Score=80.93 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=105.8
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhccc
Q 013609 274 MGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGR 353 (439)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (439)
.+++.+...++..++.++.|+++|++|||+ .+..+.+...++.++.....+.......=++.....+...
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~----------~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~ 160 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKK----------TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGAS 160 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhh
Confidence 378899999999999999999999999999 8899999999999888888777666665554444444444
Q ss_pred ccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 354 AGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 354 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
.....+..|..| +.||...+..+....+|..++ .+.+...++.. .+|+..+.+..+.+++-.+..++.+
T Consensus 161 ~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~---------~~Wr~~~~~~~i~~~~~~~~~~~~p 230 (513)
T KOG0254|consen 161 VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVY---------AGWRIPLGLALIPAVILALGMLFLP 230 (513)
T ss_pred hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCC---------ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 666777888877 699999999999988777777 55555544320 2789888777777766666644443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.7e-07 Score=60.74 Aligned_cols=71 Identities=15% Similarity=0.053 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 14 TFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
+-..+++.+.......|.+|...++.|+|+.|+|.+.++..+...++++++|.++||+++++..+....+.
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34556667777788888889999999999999999999999999999999999999999999888776554
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.3e-06 Score=78.69 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=109.3
Q ss_pred HhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHH
Q 013609 265 LGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSI 344 (439)
Q Consensus 265 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (439)
+..++...+.+.+.+...++.+++.+.++.+.||++..+ .+....++..+..++-...++.+..++.-++
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~----------~l~~~~~~w~~~~~~~~~~~s~~~~ialr~l 143 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK----------GLSVSGILWGLFGFLTAAVHSFPGLIALRFL 143 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHH----------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 446677788899999999999999999999999998555 3333333333333232234455555555555
Q ss_pred HHHhhhcccccccccccccC-CChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHH
Q 013609 345 ALGFLALGRAGFAVNHMDIA-PRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCIL 423 (439)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (439)
.+.+-+...|....+..... +++|+.-+|+.++..++|+++|..+...+.+..+.. ...+|++.|++-+++.+.
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~-----~~~gW~~~FiI~G~i~~~ 218 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG-----GLAGWRWLFIIEGVITLV 218 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC-----CcCCceeehhHHHHHHHH
Confidence 55555666677666666655 479999999999999999999999998876533211 124899999999988877
Q ss_pred HHHHHHHhc
Q 013609 424 SSFVFLLFS 432 (439)
Q Consensus 424 ~~~~~~~~~ 432 (439)
..++.++..
T Consensus 219 ~gi~~f~~l 227 (495)
T KOG2533|consen 219 LGIVVFFFL 227 (495)
T ss_pred HHheEEEEe
Confidence 776655443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.8e-06 Score=81.35 Aligned_cols=141 Identities=13% Similarity=0.080 Sum_probs=110.0
Q ss_pred hCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHH
Q 013609 267 LQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIAL 346 (439)
Q Consensus 267 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (439)
...+.....+..++..++..+|.++.|.++||+|||+ +...++++..++-+...+.++.....+.=++..
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~----------~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G 182 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKP----------VLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSG 182 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHH----------HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4456666677788899999999999999999999999 999999999998888888888877766655544
Q ss_pred Hhhhcccccc-cccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHH
Q 013609 347 GFLALGRAGF-AVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSS 425 (439)
Q Consensus 347 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (439)
.+........ ....+.+.|++|+.+..+ ......++.+++...+++.. +|++.+++.....++..
T Consensus 183 ~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-------------~Wr~~~~~~~~~~~~~~ 248 (521)
T KOG0255|consen 183 FFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-------------DWRWLFWIISIPSGLFL 248 (521)
T ss_pred hhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-------------hHHHHHHHHHHHHHHHH
Confidence 4444333333 444455677999999999 88888999999999988886 48888888888877776
Q ss_pred HHHHHh
Q 013609 426 FVFLLF 431 (439)
Q Consensus 426 ~~~~~~ 431 (439)
+..++.
T Consensus 249 ~~~~l~ 254 (521)
T KOG0255|consen 249 LLWFLP 254 (521)
T ss_pred HHHHcc
Confidence 664444
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.2e-05 Score=72.58 Aligned_cols=154 Identities=10% Similarity=0.099 Sum_probs=123.2
Q ss_pred hhHHHHHHHH-HhhCCCccchhhhhhhhhhhhhhhccccccccc-ccCchHHHHHHHHHHHHHHhh---hcCCcchHHHH
Q 013609 27 GFSIAYTAAA-DAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQ-KIGGRKVLLFSFVLWSSTCFW---LKLDPNNVFIL 101 (439)
Q Consensus 27 ~~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~l 101 (439)
.-.+++.++. +-||++..|...++.....|..++....|.+.. |.++|+.-.+++....++..+ .+... +.+.+
T Consensus 226 ~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~-~~~~~ 304 (403)
T PF03209_consen 226 MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG-SPWLF 304 (403)
T ss_pred hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc-cchHH
Confidence 3344555543 458999999999999999999999999998877 678888888888777666654 34444 78999
Q ss_pred HHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc----------cCCchhHHHHh
Q 013609 102 VVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY----------NGPNSVFNAEA 171 (439)
Q Consensus 102 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------~~wr~~f~~~~ 171 (439)
...-++.|++.|.......+..-|..++++.|..+|.+.....++..++..+++.+.|. .++..+|.+.+
T Consensus 305 ~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa 384 (403)
T PF03209_consen 305 RPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEA 384 (403)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988762 23455666666
Q ss_pred HHHHHHHHHH
Q 013609 172 ALGGMWSLLW 181 (439)
Q Consensus 172 ~~~~~~~~~~ 181 (439)
+..++...+.
T Consensus 385 ~ll~~a~~ll 394 (403)
T PF03209_consen 385 VLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHH
Confidence 6555544443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.1e-06 Score=69.64 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhc
Q 013609 251 ALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALP 330 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
..+.+..|.|.. ++.+|+|+.|...+.....++..+ .+..|.+.||.+.+. .+.++.+...++...+.
T Consensus 17 t~Y~Fs~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~----------~l~iG~~~~~~GY~~~~ 84 (250)
T PF06813_consen 17 TTYTFSAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWV----------VLLIGAVLGFVGYGLLW 84 (250)
T ss_pred cccchhhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHH----------HHHHHHHHHHHHHHHHH
Confidence 445566666655 456999999999998888888876 488899999999888 88888888888777665
Q ss_pred ccC-----ChhHHHHHHHHHHHhhhc--ccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 331 IFR-----SSNGAIFCSSIALGFLAL--GRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 331 ~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
..- .......++....+..+. ..........+-+|++||++.|+.-....+++++-..+...+.+..
T Consensus 85 l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~ 158 (250)
T PF06813_consen 85 LAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD 158 (250)
T ss_pred HHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence 421 112222222222222221 1122222233456789999999999999999999888887777653
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.1e-06 Score=55.97 Aligned_cols=63 Identities=25% Similarity=0.369 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 013609 240 AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKR 303 (439)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 303 (439)
.+-..+++.+.+...+..++|.|+++ .|+|+.+.|.+.++..+..+++.++.|.++||.++++
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 34556777888888999999999998 8999999999999999999999999999999999998
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.4e-05 Score=74.22 Aligned_cols=169 Identities=14% Similarity=0.015 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHh-hhccccchhhhhHHHHHHHHHHHHHHHhhh
Q 013609 251 ALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHL-ITKRILSVTRTRKFLNTVGFMVASIALMAL 329 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
+++++...+..|+.+.+|++..++..+........-+..+++|++.|++ |+++ .+..+.++..++..++
T Consensus 2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~----------tIl~~~ii~~lG~~ll 71 (654)
T TIGR00926 2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFK----------TILYLSIVYVVGHALL 71 (654)
T ss_pred ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHHHHHHH
Confidence 3566677788888888999998888887777777778888999999964 5555 6666666666666655
Q ss_pred cccCCh--------hHHHHHHHHHHHhhhcccccccccccc-cCC---ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccc
Q 013609 330 PIFRSS--------NGAIFCSSIALGFLALGRAGFAVNHMD-IAP---RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAA 397 (439)
Q Consensus 330 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 397 (439)
.....+ ...+..+.+..+..+..-+.......+ ..+ +.+-....+.....++|+.+++.+.+++.+..
T Consensus 72 ai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 72 SFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred HhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 443211 111122222222223333444444333 332 24788899999999999999999999887543
Q ss_pred cccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 398 KTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
+.-+ ...+|..+|.+.++..+++.++....++
T Consensus 152 ~~fg----~~~~~~~aF~i~~i~m~ia~lvf~~g~k 183 (654)
T TIGR00926 152 GCFG----CQDCYPLAFGVPAILMILALIVFMAGSK 183 (654)
T ss_pred cccc----cCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1000 0026888999998888888877765443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.012 Score=54.84 Aligned_cols=279 Identities=8% Similarity=-0.051 Sum_probs=155.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhC---CCccchhhhhhhhhh-hhhhhcccccccccccCchHHHHHHHH
Q 013609 7 RYLIVILTFISTCVCYIERVGFSIAYTAAADAAG---VNQSSKGTILSTFYY-GYACSQVPGGWAAQKIGGRKVLLFSFV 82 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~ 82 (439)
.+..++.+.+..++..+..+..-. +.+.+- .+++.+.++-+..-+ +..+..++.+++.+++.|.+++-+.+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR~----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~ 100 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLRS----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG 100 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 445556666666666665554433 444443 345667788777777 677888999999999999999988777
Q ss_pred HHHHHHhhhcCCcc--------h-----------------------HHHHHHHHHHHhhhcccchh-hHHHHhhhccCCc
Q 013609 83 LWSSTCFWLKLDPN--------N-----------------------VFILVVARLLVGVSQGFIFP-SIHTVLAQWVPPH 130 (439)
Q Consensus 83 ~~~~~~~~~~~~~~--------~-----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~ 130 (439)
.+....+++++.-. + .|...+.-.+.-+=.+.... .-.....|....+
T Consensus 101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ 180 (509)
T COG3202 101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE 180 (509)
T ss_pred HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 76666666654310 1 12222222222222122222 3345567888888
Q ss_pred ccchhhHHHhhhhhHHHHHHhhhhhhhhcccC----------CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCccc
Q 013609 131 ERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG----------PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAG 200 (439)
Q Consensus 131 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~----------wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (439)
|-.|..+.++.+.+++..++..+..++.++.. -+..+.+.+..++++..+..+.-+...+++....+..+
T Consensus 181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~ 260 (509)
T COG3202 181 EAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKK 260 (509)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhc
Confidence 99999999999999999999888888766211 23334444444444433333332222222110000000
Q ss_pred ccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc---chh
Q 013609 201 FGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEM---GSS 277 (439)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~ 277 (439)
..+.++.+-...+.++-+.|+|-++.+.+...+++.+.+.+....-.-.++.+..+.+-. +.+
T Consensus 261 --------------kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~ 326 (509)
T COG3202 261 --------------KKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRF 326 (509)
T ss_pred --------------ccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHH
Confidence 000001112234566677888888888888888777777666444444444332222222 223
Q ss_pred hhhhHHH-HHHHHHHHHHHHHHhhhcc
Q 013609 278 KMMPYLN-MFIFSNIGGVVADHLITKR 303 (439)
Q Consensus 278 ~~~~~~~-~~~~~~~~g~l~d~~~~~~ 303 (439)
....++. .++....++.+.+|.|-..
T Consensus 327 ~~~tgvv~~v~~~~~~s~~ir~~GW~~ 353 (509)
T COG3202 327 QIWTGVVSLVVFLFPGSNLIRRVGWFT 353 (509)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhHHH
Confidence 3344444 3344455666776666544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00036 Score=62.31 Aligned_cols=150 Identities=11% Similarity=0.001 Sum_probs=92.8
Q ss_pred hhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHH
Q 013609 266 GLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIA 345 (439)
Q Consensus 266 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (439)
.+|++..|++.++......+.+...+.|.+.||+|||+ ..+...++..+.++.... ++....++.=+++
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~----------~cl~~cily~~scl~k~~-~~~~~L~~GRvlg 131 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK----------ACLLFCILYSLSCLTKHS-SNYPVLLLGRVLG 131 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH----------HHHHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 48999999999999999999999999999999999999 777777777776654433 3333333332222
Q ss_pred HHhhhccccccc-ccc-----cccCCChhhHHHHHHHHH-hhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHH
Q 013609 346 LGFLALGRAGFA-VNH-----MDIAPRYAGIVMGISNTA-GTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPG 418 (439)
Q Consensus 346 ~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~g~~~~~-~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (439)
...........- .+. .+.+++..+...+..... +.+-.+.+..+.-.+.+..+ .+...+|....
T Consensus 132 GiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~---------~g~vaPF~~a~ 202 (354)
T PF05631_consen 132 GIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG---------FGPVAPFDAAI 202 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC---------CCCcchHHHHH
Confidence 222222222221 111 233445556666655533 33444455555556666551 23477888888
Q ss_pred HHHHHHHHHHHHhccCC
Q 013609 419 LLCILSSFVFLLFSTGE 435 (439)
Q Consensus 419 ~~~~~~~~~~~~~~~~~ 435 (439)
.+.+++.++.....+|+
T Consensus 203 ~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 203 VLLAVAAVLILKTWPEN 219 (354)
T ss_pred HHHHHHHHHHHhccccc
Confidence 88888877766555543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00021 Score=67.53 Aligned_cols=131 Identities=18% Similarity=0.080 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhccccccccccc
Q 013609 282 YLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHM 361 (439)
Q Consensus 282 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (439)
++..++.+...|.++||+|||. .+......+.+......+.. ++... ..-..+...........+..
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~----------~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~va 138 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKV----------VLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVA 138 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhh----------hHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhhee
Confidence 6778888999999999999998 55555444444443333332 22222 11111122222333444555
Q ss_pred ccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCc
Q 013609 362 DIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 362 ~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
+... |+|....|+.+.....+..++|.+.+.+.+.. ++..++.+..+..+++.+......+++.
T Consensus 139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~-----------~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL-----------GIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-----------CchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 5544 79999999999999999999999999999987 8999999999999988887777666543
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00013 Score=62.74 Aligned_cols=139 Identities=12% Similarity=0.126 Sum_probs=92.6
Q ss_pred hhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhh
Q 013609 46 KGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQ 125 (439)
Q Consensus 46 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 125 (439)
.|.+.-+-.+...+..+.+....||+---.=..+..++.+.+..+.+++. +.++-+.+-.+..++.|.....-.++-+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~-s~~~sL~GV~~aSissGlGEiTFL~lss- 141 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSN-SVPMSLLGVVFASISSGLGEITFLALSS- 141 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEecc-chhHHHhhhhhhhhcCCcceeehhhhhc-
Confidence 34455555556666667777778886443335566777788899999995 8999999999998988876665555443
Q ss_pred ccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc--ccCCchhHHHHhHHHHHHHHHHhhhccCCCC
Q 013609 126 WVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK--YNGPNSVFNAEAALGGMWSLLWFKYATDPPR 190 (439)
Q Consensus 126 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~ 190 (439)
.+|+ ...+.++.+.+.++++|..--..+.+ ..+-|...++...+..+.....++.+++++.
T Consensus 142 ~Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes 204 (409)
T KOG3880|consen 142 RYPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPES 204 (409)
T ss_pred cCCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCcc
Confidence 3333 33455666666667777766555655 3467888888777776666666666655443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00023 Score=60.27 Aligned_cols=240 Identities=11% Similarity=0.069 Sum_probs=113.4
Q ss_pred cccchhhHHHhhhhhHHHHHHhhhhhhh---hc--ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCc
Q 013609 130 HERSRSVSLTTSGMYLGAAMGMLFLPSL---VK--YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGES 204 (439)
Q Consensus 130 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l---~~--~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (439)
|+|+....+...+.++|.++....--.- .+ .-+|++.+.+.+++..+-+++...+-.|-...... +.++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~--~k~~---- 75 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK--EKQE---- 75 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc--cccc----
Confidence 6777777777888888887765432111 11 23599999998888777666655553321111111 0000
Q ss_pred cCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc---------cc-
Q 013609 205 LLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQ---------EM- 274 (439)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---------~~- 274 (439)
+++...+.+....+.+|+|..|...+.+....... .....+.+.......++. +.
T Consensus 76 -------------k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~--V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~ 140 (267)
T PF07672_consen 76 -------------KENSTLSKKPSYKSILKEKETWKWILIYGIWLVVV--VFPFTPSWFNILIWISPANIKSVVSGGGFN 140 (267)
T ss_pred -------------cccccccccchHHHHHccchHHHHHHHHHHHheeE--EEeccchhHhHhhhcCcccccccccccccc
Confidence 00112233466789999999988776655433221 111122222221222221 11
Q ss_pred ---chhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcc-cCChh----HHHHHHHHHH
Q 013609 275 ---GSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPI-FRSSN----GAIFCSSIAL 346 (439)
Q Consensus 275 ---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~ 346 (439)
.....+...+..+|....|.+.+..-+|| ..-..+...+.++..+..+.... ..+.. ...+..++..
T Consensus 141 ~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk-----~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G 215 (267)
T PF07672_consen 141 WIIPIFQILFVAGYFLGPFTIGLWNKTNYKRK-----PFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAG 215 (267)
T ss_pred hhhHHHHHHHHHHHhhhceeeccchhhhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence 11222222333344444455554332333 11111223334444444433211 22221 1111122222
Q ss_pred Hhhhccccccccccc---ccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhc
Q 013609 347 GFLALGRAGFAVNHM---DIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395 (439)
Q Consensus 347 ~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 395 (439)
.+.-...+....... +..|++.|...|+.-.++++.-.+.-.+...+.|
T Consensus 216 ~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i~~ 267 (267)
T PF07672_consen 216 FFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSVIAD 267 (267)
T ss_pred HHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222122222222222 3567888999999999988888777776665543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00025 Score=66.32 Aligned_cols=185 Identities=15% Similarity=0.137 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhh-ccccchhhhhHHHH
Q 013609 238 VWAIVVNNFTFHYALYVLMNWLPTYFEL-GLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLIT-KRILSVTRTRKFLN 315 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~ 315 (439)
.+...+..++....+..+..-.-.|+++ ..+-+.+..|+..+...++..++++..|+...|.+. |+ .+
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~----------Pl 105 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKK----------PL 105 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCccc----------CH
Confidence 3444444455544444444334445554 245566677999999999999999999999998885 33 57
Q ss_pred HHHHHHHHHHHhhhcc---cCChhHHHHHHHHHHHhhhcc---cccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHH
Q 013609 316 TVGFMVASIALMALPI---FRSSNGAIFCSSIALGFLALG---RAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVD 388 (439)
Q Consensus 316 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~ 388 (439)
+.+.+++.++.++... .++. ...+++++-.+.+.. ....-.+..+ ..+++|.++.+..+....+|.++||.
T Consensus 106 i~s~ii~~~g~llY~~l~~~~~~--~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~ 183 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVPNG--VKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT 183 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence 7788888887776632 2232 222222222222222 2233344444 34578899998888888888888887
Q ss_pred HHHHhhcccccccc--CCCCcccchhHHHHHHHHHHHHHHHHHHhccC
Q 013609 389 MTGKLLEAAKTTYS--DLSSPESWRAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 389 ~~g~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
+...+.....++.. +...-+.|+.+-++++++.++..+......||
T Consensus 184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 76655544322211 11233568888899999998888877776555
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0019 Score=60.91 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhh
Q 013609 97 NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLF 153 (439)
Q Consensus 97 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 153 (439)
.++..++.-++.|++.+.......++.+. +|++ .+..+..+.+++++++..+
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHH
Confidence 57777788888999999888888888774 5543 4556666666666665544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00034 Score=66.22 Aligned_cols=158 Identities=16% Similarity=0.256 Sum_probs=98.0
Q ss_pred HHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCC----
Q 013609 259 LPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRS---- 334 (439)
Q Consensus 259 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 334 (439)
...++++.+|+++.+...+.....+-. ...++.|.++|-+.-.. .+||+.+.++.++..+....+...+.
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G-----~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s 85 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFG-----YRRKPYMIIGWLLGAVSALVLALLPASESS 85 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccC-----CcchHHHHHHHHHHHHHHHHHHhcccccch
Confidence 445677779999998876655554433 34678889999875322 22456777777777555554444332
Q ss_pred hhHHHHHHH-HHHHhhhccccccccccccc---CCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccc
Q 013609 335 SNGAIFCSS-IALGFLALGRAGFAVNHMDI---APRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESW 410 (439)
Q Consensus 335 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~ 410 (439)
.......++ ...+.... -........|. .|+.+|...+.....+.+|+.++..+.|.+.+.. ++
T Consensus 86 ~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-----------~~ 153 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFA-DVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-----------GP 153 (433)
T ss_pred hhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-----------CC
Confidence 222222222 22222221 12222222222 3444899999999999999999999999999987 67
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccC
Q 013609 411 RAVFFIPGLLCILSSFVFLLFSTG 434 (439)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~ 434 (439)
+..|.+.+.+..+..+..+.+.++
T Consensus 154 ~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 154 QGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred eEEehHHHHHHHHHHHHHHHhhhh
Confidence 778888777766665555555443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00023 Score=66.25 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhhhcCC--cch------HHHHHHHHHHHhhhcccchhhHHHHhhhccCCc---ccchhhHHHhhhh
Q 013609 75 KVLLFSFVLWSSTCFWLKLD--PNN------VFILVVARLLVGVSQGFIFPSIHTVLAQWVPPH---ERSRSVSLTTSGM 143 (439)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~--~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 143 (439)
|+++++.+++.+|.++..++ +.+ .+.+.++-.+.++|.|+.-|...++.+|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56778888888888773332 212 367888899999999999999999999999865 4677888999999
Q ss_pred hHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHH
Q 013609 144 YLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLW 181 (439)
Q Consensus 144 ~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~ 181 (439)
++|..++..+.+++-++.+|.+.|.+.++..++..+..
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999887776655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.006 Score=55.70 Aligned_cols=124 Identities=9% Similarity=-0.008 Sum_probs=62.7
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCch---HHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGR---KVLLFSFV 82 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr---~~l~~~~~ 82 (439)
++.......++..+-....++.+..+.+...+++-.++. .......+.+...+...+.-.+--+...| ++......
T Consensus 15 ~~~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~ 93 (406)
T KOG1479|consen 15 GYNLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSL 93 (406)
T ss_pred ccccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555566777788888888887754444 33333344444444444333333333222 22111111
Q ss_pred HHHHHHhh--hcC-----Cc-chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcc
Q 013609 83 LWSSTCFW--LKL-----DP-NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHE 131 (439)
Q Consensus 83 ~~~~~~~~--~~~-----~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 131 (439)
...+.... .+. .+ ..+...++.-++.+.+.+......+...++ +|+|.
T Consensus 94 ~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~y 149 (406)
T KOG1479|consen 94 IAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEY 149 (406)
T ss_pred HHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHH
Confidence 11111111 111 11 056677777788888888777777777666 45443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0012 Score=45.64 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhh
Q 013609 249 HYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMA 328 (439)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (439)
..+-+.+...+|...+| .++|..+.+++.+.+.++..+|.+...++.++..+++ ....+.+...+....
T Consensus 5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~ 73 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR----------LLRAGLLLTVLSTAA 73 (85)
T ss_pred hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH----------HHHHHHHHHHHHHHH
Confidence 34556677788888777 7999999999999999999999999999888766666 788888888888888
Q ss_pred hcccCChhH
Q 013609 329 LPIFRSSNG 337 (439)
Q Consensus 329 ~~~~~~~~~ 337 (439)
+...++...
T Consensus 74 ma~~~~~~~ 82 (85)
T PF06779_consen 74 MALTHSFWL 82 (85)
T ss_pred HHHHhchHH
Confidence 877765543
|
Note that many members are hypothetical proteins. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=60.21 Aligned_cols=175 Identities=13% Similarity=-0.003 Sum_probs=107.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCc-hHHHHHHHHHHHHHHhh---h
Q 013609 16 ISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGG-RKVLLFSFVLWSSTCFW---L 91 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~---~ 91 (439)
+++.......+.....+......-|.+....|++...-.++.++++...|.+.||... |.++++......++... +
T Consensus 273 ~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~ 352 (480)
T KOG2563|consen 273 ICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTC 352 (480)
T ss_pred HHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444445554445556667789999999999999999999999999854 45555555554444211 1
Q ss_pred cCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccC---Cch-hH
Q 013609 92 KLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNG---PNS-VF 167 (439)
Q Consensus 92 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~---wr~-~f 167 (439)
..-+.+.+.+...-.+.|++.....|...-+-.|..-|..-+...|..+....+=..+-..+-+...+..+ |.. .-
T Consensus 353 t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (480)
T KOG2563|consen 353 TLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPAN 432 (480)
T ss_pred hccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccch
Confidence 11112445556666778888888999999998887655556677777777555555555555566666554 333 33
Q ss_pred HHHhHHHHHHHHHHhhhccCCCC
Q 013609 168 NAEAALGGMWSLLWFKYATDPPR 190 (439)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~ 190 (439)
+.......+..++..++.|+-.+
T Consensus 433 i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 433 IFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred hHhHHHHHHHHHHHhhhhhhHHh
Confidence 33333444444455555444333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.018 Score=53.15 Aligned_cols=164 Identities=12% Similarity=-0.008 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHh-hCCcccccchhhhhh-HHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 013609 254 VLMNWLPTYFELG-LQLSLQEMGSSKMMP-YLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPI 331 (439)
Q Consensus 254 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
....++..|+.+. .|++.+|...-..+. .=..+...+....+.|.++.|. +++.+.+...+...++.+
T Consensus 21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykp----------viil~~~~~i~t~~lll~ 90 (412)
T PF01770_consen 21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKP----------VIILQALSYIITWLLLLF 90 (412)
T ss_pred CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHHHHHHH
Confidence 3456777888776 889888875433333 3355566677788999998888 777777766666666666
Q ss_pred cCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccch
Q 013609 332 FRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWR 411 (439)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~ 411 (439)
.++....-..-++.......-..-....-..++|++.-++.+.......+|..++..++-.+..... .+|.
T Consensus 91 ~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~---------~sy~ 161 (412)
T PF01770_consen 91 GTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG---------VSYF 161 (412)
T ss_pred HCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCHH
Confidence 6555544444333322222222222333445677888888998889888888888888887776331 3677
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCc
Q 013609 412 AVFFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
....+......++.+..+++++.+|
T Consensus 162 ~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 162 QLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 7777777777777777777766543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.036 Score=43.95 Aligned_cols=108 Identities=15% Similarity=0.006 Sum_probs=70.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHH-HHHHHHhhhccccc
Q 013609 277 SKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFC-SSIALGFLALGRAG 355 (439)
Q Consensus 277 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 355 (439)
-.++......+..++.+.+.+++|.|+ .+.++.+...+-....... +.+..+.. .+.+.+. +.....
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~----------sm~lg~~~y~~y~~~~~~~-~~~~l~~~s~l~G~~~-a~lW~a 109 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKW----------SMILGSLGYAIYIASFFYP-NSYTLYPASALLGFGA-ALLWTA 109 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHH----------HHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhh-HHhhHh
Confidence 345666777888888999999999998 7777777776555544433 33333333 3333333 333344
Q ss_pred ccccccccC-CChhhHHHHHHHHHhhhhHHHHHHHHHHhhcc
Q 013609 356 FAVNHMDIA-PRYAGIVMGISNTAGTLAGIVGVDMTGKLLEA 396 (439)
Q Consensus 356 ~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 396 (439)
...+..+.+ ++.+++-.++...+.+.+..+|..+.-.+...
T Consensus 110 qg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~~ 151 (156)
T PF05978_consen 110 QGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQG 151 (156)
T ss_pred hhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444444 47899999999999999888888776555443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.024 Score=54.93 Aligned_cols=160 Identities=16% Similarity=0.224 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHH-HHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHH--HH-HHH-h
Q 013609 15 FISTCVCYIERVGFSIAYTAA-ADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVL--WS-STC-F 89 (439)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~--~~-~~~-~ 89 (439)
.+..++.+.....+-.+...+ ..-+|-+..+.+.+.+++.+|.++|+.+.+++.++--|+.. .+-..+ .+ ++. +
T Consensus 20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~l 98 (521)
T PRK03612 20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALI 98 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHH
Confidence 334444455544555544443 34568788889999999999999999999888744333322 111111 11 111 1
Q ss_pred ---hhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc-ccCCch
Q 013609 90 ---WLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK-YNGPNS 165 (439)
Q Consensus 90 ---~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~wr~ 165 (439)
..++.......+...-++.++..|+..|....+..+.. .++-++..|-......+|.++|.++.+++.- .+|-..
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~ 177 (521)
T PRK03612 99 LYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIR 177 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHH
Confidence 11111101122334445667888888888777776543 2345677888888999999999988877554 556444
Q ss_pred hHHHHhHHHHH
Q 013609 166 VFNAEAALGGM 176 (439)
Q Consensus 166 ~f~~~~~~~~~ 176 (439)
..++.+.+.++
T Consensus 178 t~~~~a~l~~~ 188 (521)
T PRK03612 178 TAALTGSLNLL 188 (521)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.044 Score=54.21 Aligned_cols=191 Identities=13% Similarity=0.082 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHH
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLN 315 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 315 (439)
+.+..+.....+......++....-.-++++++++..+.|++...+-++..+......+...|..|.+ ++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr----------~I 165 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPR----------WI 165 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccc----------ee
Confidence 44444333333333333355555555677789999999999999999999999998888888887777 67
Q ss_pred HHHHHHHHHHHhhhcccC-------------------C-----------------------------hhHHHHHHHHHHH
Q 013609 316 TVGFMVASIALMALPIFR-------------------S-----------------------------SNGAIFCSSIALG 347 (439)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~-------------------~-----------------------------~~~~~~~~~~~~~ 347 (439)
..+.++.+++.++....+ . ......+++++..
T Consensus 166 g~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~ 245 (735)
T KOG3626|consen 166 GIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQL 245 (735)
T ss_pred eechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHH
Confidence 777777777666654321 0 0012333333333
Q ss_pred hhhccc----ccccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccc-cc-------CCCCcccchhHH
Q 013609 348 FLALGR----AGFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTT-YS-------DLSSPESWRAVF 414 (439)
Q Consensus 348 ~~~~~~----~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~-~~-------~~~~~~~~~~~~ 414 (439)
+.+.+. +.-..++.|... ++.+...|+..++..+|=++|-.+.+.+...+..- .. |.-..+.|...|
T Consensus 246 l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGF 325 (735)
T KOG3626|consen 246 LLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGF 325 (735)
T ss_pred HhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHH
Confidence 333332 222455666554 67889999999999998888888888877655333 11 111335577788
Q ss_pred HHHHHHHHHHHHHHHHhccCCc
Q 013609 415 FIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
++++.+.+++.+.+++++|+.+
T Consensus 326 Li~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 326 LICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHHHhCcccCc
Confidence 8899999999999988887643
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.1 Score=50.67 Aligned_cols=149 Identities=13% Similarity=-0.046 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHH
Q 013609 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMV 321 (439)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 321 (439)
....++..++...+.......+...+|.+..+.+.+.+.+..+..+|+.+++++.++..++. . ..-+.++.+.
T Consensus 20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~------~-~~e~~i~l~~ 92 (521)
T PRK03612 20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF------V-AVELLLALLG 92 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH------H-HHHHHHHHHH
Confidence 33445556666666666666777668888888888888877777778777776653322221 0 0001111111
Q ss_pred HHHHHh---hhcccCChhHH-HHHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhc-c
Q 013609 322 ASIALM---ALPIFRSSNGA-IFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLE-A 396 (439)
Q Consensus 322 ~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~ 396 (439)
.....+ ...+....... ....++...+.+...|...-.......++.+...|-......+|+.+|+.+.+.+.- .
T Consensus 93 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~ 172 (521)
T PRK03612 93 GLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPR 172 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHh
Confidence 111111 11111001111 111111112222223333333333333345677888888999999999999888765 4
Q ss_pred c
Q 013609 397 A 397 (439)
Q Consensus 397 ~ 397 (439)
.
T Consensus 173 l 173 (521)
T PRK03612 173 L 173 (521)
T ss_pred c
Confidence 4
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.11 Score=46.28 Aligned_cols=152 Identities=21% Similarity=0.195 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCcc--cccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHh
Q 013609 250 YALYVLMNWLPTYFELGLQLSL--QEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALM 327 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (439)
..........+.+..+ .+.+. ...+.......+...++.+..|.+.||.|+|+ ....+......+..
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~----------~~~~~~~~~~~~~~ 84 (338)
T COG0477 16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRK----------VLIIGLLLFLLGTL 84 (338)
T ss_pred HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchH----------HHHHHHHHHHHHHH
Confidence 3334444556666655 44444 36778888888888888899999999998876 44444433233333
Q ss_pred hhcccCC--hhHHHHHHHHHHHhhhcccccccccccccCC--ChhhHHHHHHHH-HhhhhHHHHHHHHHHhhcccccccc
Q 013609 328 ALPIFRS--SNGAIFCSSIALGFLALGRAGFAVNHMDIAP--RYAGIVMGISNT-AGTLAGIVGVDMTGKLLEAAKTTYS 402 (439)
Q Consensus 328 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~-~~~~g~~i~~~~~g~l~~~~~~~~~ 402 (439)
......+ ...............+...+.......+..| ++|+...+.... ....+..++|.+.+.+.+. ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 160 (338)
T COG0477 85 LLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA--LL-- 160 (338)
T ss_pred HHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh--
Confidence 3333333 2222222222111222333444555555555 478888888888 5778888888777777665 11
Q ss_pred CCCCcccchhHHHHHHHHH
Q 013609 403 DLSSPESWRAVFFIPGLLC 421 (439)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~ 421 (439)
.+|+..+.......
T Consensus 161 -----~~~~~~~~~~~~~~ 174 (338)
T COG0477 161 -----WGWRAAFLLAALLG 174 (338)
T ss_pred -----cchHHHHHHHHHHH
Confidence 25676555554444
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.00055 Score=57.54 Aligned_cols=207 Identities=15% Similarity=0.150 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccc---------cccCchHHHHHHHHHH
Q 013609 14 TFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAA---------QKIGGRKVLLFSFVLW 84 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~---------dr~Grr~~l~~~~~~~ 84 (439)
-..+.+.+-......-..+-...++.+.++.+...++-+..+.-++..++.|... ||+|||+..-
T Consensus 22 yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~wh------ 95 (412)
T KOG4830|consen 22 YGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSWH------ 95 (412)
T ss_pred echhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeeee------
Confidence 3455666666666666666667788899998888888888888888888887554 6899987542
Q ss_pred HHHHhhhcCCc----------------c---hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhH
Q 013609 85 SSTCFWLKLDP----------------N---NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYL 145 (439)
Q Consensus 85 ~~~~~~~~~~~----------------~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 145 (439)
.+++++.+++- . |..++..+-.+.|++-+...-...+.
T Consensus 96 ~~gt~lVslSf~~ifg~a~iF~~~~~~s~vanlglyaialvVFgv~~A~~ke~tea~----------------------- 152 (412)
T KOG4830|consen 96 LIGTVLVSLSFPMIFGFAKIFLCKSTTSEVANLGLYAIALVVFGVGWASVKESTEAL----------------------- 152 (412)
T ss_pred ecccEEEEEechhhcCceeEEeeccHHHHHHHhHHHHHHhheeeeeeecccccHHHH-----------------------
Confidence 22222222221 0 22223333333333322211111000
Q ss_pred HHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhcccccccccc
Q 013609 146 GAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAA 225 (439)
Q Consensus 146 g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (439)
.|+.=|....+++......+.+.+| |+.. .+. ++.+..
T Consensus 153 -----------------~R~~~~~~v~lG~~~~~vF~~~TrE-P~~~---~~~---------------------~~s~~~ 190 (412)
T KOG4830|consen 153 -----------------IRLAGWLVVVLGITVAFVFYAFTRE-PTNS---FSS---------------------DASELV 190 (412)
T ss_pred -----------------HHHhhhheeeeceeEEEEEeecccC-cccc---cCc---------------------chhhhh
Confidence 1333333223332222222223233 2211 111 112334
Q ss_pred CchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHH
Q 013609 226 KIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNI 291 (439)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 291 (439)
+.+|..-+++-.+....+.+.+.-...+.-..|+|.|..+.++++.+..+++-.+..+++...+.+
T Consensus 191 Rm~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v 256 (412)
T KOG4830|consen 191 RMHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMV 256 (412)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhh
Confidence 556667788888888889999988888888999999988878877776666555555555544443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.61 Score=43.96 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHH
Q 013609 237 PVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNT 316 (439)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 316 (439)
..+.+....++.....-...+-.|.++.+.+.-+-.-.+.......+..++.+...|.+.||..|.+-.+... ..--
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l---~~Qn 79 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSL---VVQN 79 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHH---HHHH
Confidence 4566778888888888889999999999876555544555556667778888888999999988777111100 0111
Q ss_pred HHHHHHHHHHhhhc-ccCC----hhHHHH--HHHHHHHhh-hccccccc--------ccccccCCChhhHHHHHHHHHhh
Q 013609 317 VGFMVASIALMALP-IFRS----SNGAIF--CSSIALGFL-ALGRAGFA--------VNHMDIAPRYAGIVMGISNTAGT 380 (439)
Q Consensus 317 ~~~~~~~~~~~~~~-~~~~----~~~~~~--~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~ 380 (439)
.+..++...++... .... ...... ......+.. -....... ....+-.++.....++.+.-+-.
T Consensus 80 ~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL 159 (432)
T PF06963_consen 80 LSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDL 159 (432)
T ss_pred HHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHH
Confidence 12222222222211 1111 122111 111122211 11111111 11112244567777888888888
Q ss_pred hhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHH
Q 013609 381 LAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVF 428 (439)
Q Consensus 381 ~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (439)
+...++|.+.|.+.+.. ++.....+.++..+++..+=
T Consensus 160 ~ckllaPl~vG~l~t~~-----------s~~~~~~~i~~~N~~S~~vE 196 (432)
T PF06963_consen 160 FCKLLAPLFVGLLMTFA-----------SPVIAAIFIAGWNLASVFVE 196 (432)
T ss_pred HHHHHHHHHHHHHhhcc-----------CHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999977 67777777777777766543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.56 Score=41.65 Aligned_cols=67 Identities=19% Similarity=0.120 Sum_probs=51.6
Q ss_pred hhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhcc
Q 013609 59 CSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWV 127 (439)
Q Consensus 59 ~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 127 (439)
....+.+.+..++|-|+++.++...+...-...-. + .+..++-.-...|++.+..+..--+++++.-
T Consensus 73 ~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~-p-r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 73 DSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLE-P-RYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc-h-hHHhhccHHHhhccccccccccCcceecHHH
Confidence 34444448899999999999999888765554433 4 7899999999999999998877777766554
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.012 Score=54.22 Aligned_cols=150 Identities=10% Similarity=0.117 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHH
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLN 315 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 315 (439)
+.........+...+++..=..++|.|+++ .|.+.+-.+.+....-+.+++.+++.|..+||...|. .+||+.+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~-----GRRRPfI 105 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRY-----GRRRPFI 105 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceeccccccccccccccc-----ccccchH
Confidence 344555666677777888888999999998 8999998888888888899999999999999876555 4455677
Q ss_pred HHHHHHHHHHHhhhcccCCh-------------hHHHHHHHHHHHhhhcc----cccccccccccC-CChhhH-HHHHHH
Q 013609 316 TVGFMVASIALMALPIFRSS-------------NGAIFCSSIALGFLALG----RAGFAVNHMDIA-PRYAGI-VMGISN 376 (439)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~-~~g~~~ 376 (439)
..+....+++++++++.... ...+...++++...-.. ....-....+.. ++++.+ +++...
T Consensus 106 ~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~ 185 (498)
T KOG0637|consen 106 LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS 185 (498)
T ss_pred HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence 77777777777777665311 12233333333332221 112223333433 344444 888888
Q ss_pred HHhhhhHHHHHHHHH
Q 013609 377 TAGTLAGIVGVDMTG 391 (439)
Q Consensus 377 ~~~~~g~~i~~~~~g 391 (439)
.+..+|+.+|-.+.+
T Consensus 186 ~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 186 FFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHhcceeeeeccc
Confidence 888888888766554
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.27 Score=46.88 Aligned_cols=41 Identities=12% Similarity=-0.082 Sum_probs=34.9
Q ss_pred cccccccccCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhc
Q 013609 355 GFAVNHMDIAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLE 395 (439)
Q Consensus 355 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 395 (439)
..+...+|... ++..+-.++.....++|..+++.+..++.+
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777766 788999999999999999999999888875
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.1 Score=48.22 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=81.5
Q ss_pred CccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHH---HHHhhhcCCcchHHHHHHHHHHHhhhcccchhh
Q 013609 42 NQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWS---STCFWLKLDPNNVFILVVARLLVGVSQGFIFPS 118 (439)
Q Consensus 42 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 118 (439)
..++..+....|.+|-.++.--...+ |+-+-+++.+--.+.. +.....-+.+ +.|..++.-+..|+..|..+.-
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fip-si~ivf~lif~eGLlGGa~YVN 355 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIP-SIWIVFVLIFYEGLLGGASYVN 355 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHhhhHHHHH
Confidence 34566777788887777664433222 4433333322222222 2223334455 8899989999999999999999
Q ss_pred HHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhh
Q 013609 119 IHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLV 158 (439)
Q Consensus 119 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 158 (439)
+...+.|-.|+++|-.++|..+.+-++|..++..++-.+-
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998876553
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.0028 Score=57.16 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHh
Q 013609 106 LLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGM 151 (439)
Q Consensus 106 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 151 (439)
++.|++.+........+.+. +|++. +.....+.++++++..
T Consensus 5 ~~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s 45 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVS 45 (309)
T ss_dssp ----------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHH
Confidence 45677777777777777775 55543 3344445555555443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.0042 Score=60.33 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=0.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhh
Q 013609 250 YALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMAL 329 (439)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
....++....-.-++++++++..++|.+.+..-++.++..++..++.+|..|.+ .+..+.++.+++.+++
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrpr----------wig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPR----------WIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc----------eeeecHHHHHHHHHHH
Confidence 444555544444567779999999999999999999999999889888866666 7778888888877766
Q ss_pred cccC-----------C-----------------------------------hhHHHHHHHHHHHhhhcccc----ccccc
Q 013609 330 PIFR-----------S-----------------------------------SNGAIFCSSIALGFLALGRA----GFAVN 359 (439)
Q Consensus 330 ~~~~-----------~-----------------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~ 359 (439)
...+ . .......++++....+.... .-..+
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 5421 0 00012223333333333222 22345
Q ss_pred ccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccccccc-----------CCCCcccchhHHHHHHHHHHHHHHH
Q 013609 360 HMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYS-----------DLSSPESWRAVFFIPGLLCILSSFV 427 (439)
Q Consensus 360 ~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (439)
..| +++++.+...|+......+|-++|-.+.+...+.+..... |..-.+.|...|++.+.+.++..+.
T Consensus 166 iDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip 245 (539)
T PF03137_consen 166 IDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP 245 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 4457788888888888888888887777777654322110 1112245666777788888887777
Q ss_pred HHHhccC
Q 013609 428 FLLFSTG 434 (439)
Q Consensus 428 ~~~~~~~ 434 (439)
.+.++|+
T Consensus 246 l~~FPk~ 252 (539)
T PF03137_consen 246 LFFFPKK 252 (539)
T ss_dssp -------
T ss_pred HHcCCcc
Confidence 7777654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.15 Score=48.11 Aligned_cols=101 Identities=13% Similarity=0.250 Sum_probs=77.3
Q ss_pred hhhhhhcccccccc---cccCchHHHHHHHHHHHHHHhhhcCCcc-----------------hHHHHHHHHHHHhhhccc
Q 013609 55 YGYACSQVPGGWAA---QKIGGRKVLLFSFVLWSSTCFWLKLDPN-----------------NVFILVVARLLVGVSQGF 114 (439)
Q Consensus 55 ~~~~~~~~~~g~l~---dr~Grr~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~r~l~G~~~~~ 114 (439)
++..++..+.+.+. +|+||++.+.++..+..++.++.-.... ++...++.-++.|++.+.
T Consensus 290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~ 369 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDAC 369 (461)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHH
Confidence 34444455555555 4689999999999888888776644311 466778888999999999
Q ss_pred chhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhh
Q 013609 115 IFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPS 156 (439)
Q Consensus 115 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 156 (439)
.....+.++.+.+ +++|..+.++...-..++..++-...+.
T Consensus 370 ~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 370 FNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999 6889999999888888887776655443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.44 Score=44.38 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=58.6
Q ss_pred HHHHHHHhhhcccccccccccccC---CChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHH
Q 013609 341 CSSIALGFLALGRAGFAVNHMDIA---PRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIP 417 (439)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 417 (439)
+.++..|.++.=+.........+. ++++.+.........++|..+++.+.+++.++. +|...|.+.
T Consensus 40 L~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~-----------~~~~~f~i~ 108 (372)
T PF00854_consen 40 LALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY-----------GWFLGFGIP 108 (372)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS------------HHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhcccc-----------chhhhhhHH
Confidence 344444444433333333333333 346888889999999999999999999999888 899999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 013609 418 GLLCILSSFVFLLFST 433 (439)
Q Consensus 418 ~~~~~~~~~~~~~~~~ 433 (439)
++..+++.+.++.-++
T Consensus 109 ~~~~~~~~~~f~~~~~ 124 (372)
T PF00854_consen 109 AIGMLLALIVFLSGRK 124 (372)
T ss_dssp HHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999988887766543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.68 E-value=6.1 Score=36.68 Aligned_cols=64 Identities=9% Similarity=-0.104 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhh
Q 013609 235 NLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300 (439)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 300 (439)
+-.++..++........++.+.+-.+.|.++..+.++ +........+.+.+...+.-.+-.|..
T Consensus 17 ~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~ 80 (406)
T KOG1479|consen 17 NLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLN 80 (406)
T ss_pred ccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777888888887777766444444 334444444444444444444444433
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.57 E-value=6.1 Score=38.99 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHH
Q 013609 240 AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGF 319 (439)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 319 (439)
.....-.+-..+++++...+-.|+.+.++.+...+...............+++++++|.+--|. +.+.++.
T Consensus 41 ~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry---------~tI~~~s 111 (571)
T KOG1237|consen 41 FILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRY---------FTINIGS 111 (571)
T ss_pred HHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH---------HHHHHHH
Confidence 3444455666677777788888888888888877776666666777777888999999765544 2555555
Q ss_pred HHHHHHHhhhcccC--------------------Chh---HHHHHHHH---HHHhhhccccccccc-ccccC---C-C--
Q 013609 320 MVASIALMALPIFR--------------------SSN---GAIFCSSI---ALGFLALGRAGFAVN-HMDIA---P-R-- 366 (439)
Q Consensus 320 ~~~~~~~~~~~~~~--------------------~~~---~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~---~-~-- 366 (439)
++..+++.++.... .+. ..++...+ ..|.++. -+..... ....+ | +
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~-r~~~~~fGadQfd~~~~~~~~ 190 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGI-RPCLLAFGADQFDELDPVEVK 190 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCC-CCcchhhcccccCccCcchhh
Confidence 55555543332210 000 01111111 1111222 2222222 22233 3 2
Q ss_pred hhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 367 YAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 367 ~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
.+..-+.......+.|..++..+.-++-++. +|...|.+..+...++.++++..
T Consensus 191 ~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-----------~w~lgf~i~~~~~~lai~iF~~g 244 (571)
T KOG1237|consen 191 GIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-----------GWKLGFGIPTVLNALAILIFLPG 244 (571)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhhhcc-----------cceeeccHHHHHHHHHHHHHHcC
Confidence 3447777788888889999888888887776 89999999888888887776553
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.34 E-value=2 Score=37.21 Aligned_cols=135 Identities=15% Similarity=0.174 Sum_probs=83.9
Q ss_pred hhhhhhhhhhhhhhhcccccccccccCch--HHHHHHHHHHHHHHhhhc----CCc--chHHHHHHHHHHHhhhcccchh
Q 013609 46 KGTILSTFYYGYACSQVPGGWAAQKIGGR--KVLLFSFVLWSSTCFWLK----LDP--NNVFILVVARLLVGVSQGFIFP 117 (439)
Q Consensus 46 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~----~~~--~~~~~l~~~r~l~G~~~~~~~~ 117 (439)
-|.+.+.+++...+++-+..++..|-..| ..+.+..+...+...+.. .+| .+...=+++-.+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 48999999999999999888887765544 344444444333322221 222 1222334444555566788999
Q ss_pred hHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHH
Q 013609 118 SIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLL 180 (439)
Q Consensus 118 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~ 180 (439)
..+.+=+++.|+++|+..+.++..-.++-..++-.---.-....+=|..|-+..+...+..+.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence 999999999999999999998887665544433211000001234567787777666555443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.10 E-value=2.9 Score=38.25 Aligned_cols=64 Identities=6% Similarity=0.022 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHH-----Hhhhcc
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVAD-----HLITKR 303 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~ 303 (439)
+++..+...+..++....... -.|.+++. .|.|..+.+.......=- ---++...+.| |+||||
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~Grrk 99 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRK 99 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhcccc
Confidence 456677777777777765555 88988885 577776665543322111 11234455566 888888
|
|
| >PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.10 E-value=9.5 Score=33.02 Aligned_cols=25 Identities=16% Similarity=-0.092 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013609 242 VVNNFTFHYALYVLMNWLPTYFELG 266 (439)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (439)
.+.........++.+..=..|.++.
T Consensus 184 G~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 184 GIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred hHHHHHHHHHHHhcccchHHHHHhC
Confidence 3333444455566666666777774
|
The region concerned is approximately 280 residues long. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.13 E-value=3 Score=37.98 Aligned_cols=166 Identities=10% Similarity=-0.042 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCcc-chhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHH----
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAAADAAGVNQS-SKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWS---- 85 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---- 85 (439)
.+.+.+++++.....-+..........+++-+.- .++.-.-.-.....+..++.|...|+..|+|++...+.+--
T Consensus 29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~ 108 (503)
T KOG2601|consen 29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVI 108 (503)
T ss_pred eehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHH
Confidence 3456777888877777778777777777764322 22222223334456777888999999999999887655432
Q ss_pred --HHHhhhcCCcc-----hHHHHHHHHHHHh----hhcccchhhHHHHhhhcc----CCcccchhh---HHHhhhhhHHH
Q 013609 86 --STCFWLKLDPN-----NVFILVVARLLVG----VSQGFIFPSIHTVLAQWV----PPHERSRSV---SLTTSGMYLGA 147 (439)
Q Consensus 86 --~~~~~~~~~~~-----~~~~l~~~r~l~G----~~~~~~~~~~~~~i~~~~----~~~~r~~~~---~~~~~~~~~g~ 147 (439)
.+.+..-+..+ +++.+..+-++.- ++.=.........-.||. ..+.+.... +.....-..-.
T Consensus 109 vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn 188 (503)
T KOG2601|consen 109 VAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTN 188 (503)
T ss_pred HHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhh
Confidence 22222223221 4444444433332 221111111111223443 233344433 44444444556
Q ss_pred HHHhhhhhhhhcccCCchhHHHHhHHHHH
Q 013609 148 AMGMLFLPSLVKYNGPNSVFNAEAALGGM 176 (439)
Q Consensus 148 ~~g~~~~~~l~~~~~wr~~f~~~~~~~~~ 176 (439)
.+.|.+.|.+.+..+-|..-...++-+.+
T Consensus 189 ~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 189 LLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred chhhhhhcccceeechhhhhhhhHHHHHH
Confidence 78899999999888888755444444443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=85.68 E-value=5.7 Score=37.89 Aligned_cols=65 Identities=11% Similarity=0.199 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCcccccchhhhh--hHHHHHHHHH-HHHHHHHHhhhcc
Q 013609 239 WAIVVNNFTFHYALYVLMNWLPTYFEL-GLQLSLQEMGSSKMM--PYLNMFIFSN-IGGVVADHLITKR 303 (439)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~--~~~~~~~~~~-~~g~l~d~~~~~~ 303 (439)
..+.+.+++++........-.|..+++ ..+.|..+.+..... ..=.-++-++ +=....+|+||||
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRK 71 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRK 71 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcc
Confidence 345666777777766555678888876 235555555543222 1222333333 3345567788887
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter | Back alignment and domain information |
|---|
Probab=80.64 E-value=16 Score=35.78 Aligned_cols=32 Identities=28% Similarity=0.229 Sum_probs=16.6
Q ss_pred CcccccchhhhhhHHHHHHHHHHHHHHHHHhh
Q 013609 269 LSLQEMGSSKMMPYLNMFIFSNIGGVVADHLI 300 (439)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 300 (439)
.++..-|.+.....+..++.+.++|+.+.|+-
T Consensus 290 ~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~y 321 (521)
T PF02990_consen 290 LSPNNRGSLLTAAIILYALTSFIAGYVSARLY 321 (521)
T ss_pred ccccCcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45554555555555555555555555555443
|
Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 439 | ||||
| 1pw4_A | 451 | Crystal Structure Of The Glycerol-3-Phosphate Trans | 8e-05 |
| >pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter From E.Coli Length = 451 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 439 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 2e-54 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-05 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 2e-54
Identities = 70/436 (16%), Positives = 154/436 (35%), Gaps = 29/436 (6%)
Query: 7 RYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGW 66
R+ I + F Y+ R F++A + G ++ G LS Y S+ G
Sbjct: 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGS 84
Query: 67 AAQKIGGRKVLLFSFVLWSSTCFWL---KLDPNNVFILVVARLLVGVSQGFIFPSIHTVL 123
+ + R L +L ++ ++ +++ ++ V L G QG +P +
Sbjct: 85 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144
Query: 124 AQWVPPHERSRSVSLTTSGMYLGAAMGM-LFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182
W ER VS+ +G + LFL + +N ++ A + +L F
Sbjct: 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204
Query: 183 KYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242
D P + ++ P + + A +I + ++ N +W I
Sbjct: 205 AMMRDTP--QSCGLPPIEEYKNDYPDDYNE----KAEQELTAKQIFMQYVLPNKLLWYIA 258
Query: 243 VNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITK 302
+ N + Y +++W PTY + +L + + + + + G ++D +
Sbjct: 259 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG 318
Query: 303 RILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD 362
R + + + + + + + + C + + ++ ++
Sbjct: 319 N-----RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 373
Query: 363 IAPRYA-GIVMGISNTAGTLAG-IVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLL 420
+AP+ A G G + G L G + + G ++ W F +
Sbjct: 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-----------GWDGGFMVMIGG 422
Query: 421 CILSSFVFLLFSTGER 436
IL+ + ++ GE+
Sbjct: 423 SILAVILLIVVMIGEK 438
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 6e-05
Identities = 55/396 (13%), Positives = 103/396 (26%), Gaps = 129/396 (32%)
Query: 89 FW-LKLDPNNVFILVVARLLVGVSQ---GFIFPSIHTVLAQWVPPHERSRSVSLTTSGMY 144
FW L + V + + V + F+ I T Q P +R +Y
Sbjct: 68 FWTLLSKQEEM----VQKFVEEVLRINYKFLMSPIKTEQRQ---PSMMTRMYIEQRDRLY 120
Query: 145 LGAAMGMLFLPSLVKYNGP---------NSVFNAEAALG----GMWSLLWFKYATDPPRS 191
KYN ++ A G+
Sbjct: 121 NDN-------QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV--------------- 158
Query: 192 EHPKASAAGFGESLLP---MRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTF 248
G G++ + KV+ KI W + + N
Sbjct: 159 -------LGSGKTWVALDVCLSYKVQCKMDF------KIFW-----------LNLKNCNS 194
Query: 249 HYALYVLMNWL-----PTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGG---VVADHLI 300
+ ++ L P + S ++ + L + S +V ++
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 301 TK----------RILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLA 350
+IL TR ++ + + + + + S L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH----ISLDHHSMT--LTPDEVKSLLL 308
Query: 351 LGRAGFAVNH---------MDIAPRY-AGIVMGISNTAGTLAGI--VGVDMTGKLLEAAK 398
++ + PR + I I + T V D KL +
Sbjct: 309 K-----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD---KLTTIIE 360
Query: 399 TTYSDLSSPESWRAVF-----F-----IP-GLLCIL 423
++ + L P +R +F F IP LL ++
Sbjct: 361 SSLNVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 439 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.56 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.54 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.51 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.45 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.44 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.34 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.32 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=335.51 Aligned_cols=397 Identities=17% Similarity=0.226 Sum_probs=316.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWS 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 85 (439)
+++..+..++++.+...++...+.+..|.+.+|+ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3467788888999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcC----CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhccc
Q 013609 86 STCFWLKL----DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYN 161 (439)
Q Consensus 86 ~~~~~~~~----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 161 (439)
++.+++++ ++ |++.++++|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++.+.+..
T Consensus 104 ~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHCHHHHS-SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhccc-cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 86 99999999999999999999999999999999999999999999999999999999999988888
Q ss_pred C-CchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHH
Q 013609 162 G-PNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWA 240 (439)
Q Consensus 162 ~-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (439)
| ||+.|++.+++.++..++.++..||+|++...+.+++...+.. + .. +++.+++........++.+|+|.++.
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYP-D-DY----NEKAEQELTAKQIFMQYVLPNKLLWY 256 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------------CCTHHHHHHTSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccc-c-cc----hhhhhcccccccchHHHHHcCHHHHH
Confidence 8 9999999999888877777777788776543221111111000 0 00 00000011111112467889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHh--hhccccchhhhhHHHHHHH
Q 013609 241 IVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHL--ITKRILSVTRTRKFLNTVG 318 (439)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~ 318 (439)
..+..++.......+..+.|.|+++.+|+++.+.+.+.....++.+++.++.+++.||+ ++|+ ....+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~----------~~~~~ 326 (451)
T 1pw4_A 257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG----------ATGVF 326 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch----------hHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999 7777 55555
Q ss_pred HHHHH-HHHhhhcccC--ChhHHHHH-HHHHHHhhhcccccccccc-cccCCChhhHHHHHHHHHhhh-hHHHHHHHHHH
Q 013609 319 FMVAS-IALMALPIFR--SSNGAIFC-SSIALGFLALGRAGFAVNH-MDIAPRYAGIVMGISNTAGTL-AGIVGVDMTGK 392 (439)
Q Consensus 319 ~~~~~-~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~-g~~i~~~~~g~ 392 (439)
..+.. ++++.+...+ +.+..... .+.+.+..... +...... +..++++|+++.|+.+...++ |..++|.+.|.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 327 FMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHH-HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchH-HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444 5555555543 22222222 22222222222 2333344 445557899999999999999 99999999999
Q ss_pred hhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhc
Q 013609 393 LLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFS 432 (439)
Q Consensus 393 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (439)
+.|.. +++..|++.+++.+++.++.+...
T Consensus 406 l~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 406 TVDFF-----------GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHSS-----------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-----------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 799999998888888877766654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=329.12 Aligned_cols=380 Identities=13% Similarity=0.070 Sum_probs=309.6
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHH
Q 013609 5 PKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLW 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 84 (439)
++++..+..+++..+..+++....++..|.+.+++|.++.+.|++.+.+.+++.++.+++|+++||+|||+++.++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 45566777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh---cCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhh-cc
Q 013609 85 SSTCFWL---KLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLV-KY 160 (439)
Q Consensus 85 ~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~ 160 (439)
+++.+++ ++++ +++.++++|+++|++.+...+...++++|++|+|+|++++++.+.+.++|..+++.+++.+. +.
T Consensus 102 ~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 102 ALGAALFWPAAEIM-NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHhccccc-cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999 8887 99999999999999999999999999999999999999999999999999999999999998 55
Q ss_pred cC-------------------------CchhHHHHhHHHHHHHHHHhhh-ccCCCCCCCCCCCcccccCccCcccchhhh
Q 013609 161 NG-------------------------PNSVFNAEAALGGMWSLLWFKY-ATDPPRSEHPKASAAGFGESLLPMRDQKVK 214 (439)
Q Consensus 161 ~~-------------------------wr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (439)
.+ ||+.|++.+.+.++..++.++. .||++++++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------------------- 241 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD------------------- 241 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC-------------------
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-------------------
Confidence 54 9999988887776655544432 23322211000
Q ss_pred hccccccccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCcccccchhhhhhHHHHHHHHHHHH
Q 013609 215 VDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTY-FELGLQLSLQEMGSSKMMPYLNMFIFSNIGG 293 (439)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 293 (439)
+++++...++++++|+|.++...+..++..........+.|.| +++.+|+++.+++.......++.+++.++.+
T Consensus 242 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 242 -----AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp -----SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1112234566889999999999999999999899999999999 8887899999999999999999999999999
Q ss_pred HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCCChhhHHHH
Q 013609 294 VVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMG 373 (439)
Q Consensus 294 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 373 (439)
++.||+++|+ .+..+.++..++.+.....++........+.+.+..... +.......+..|++++.+.+
T Consensus 317 ~l~~r~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 385 (438)
T 3o7q_A 317 WLISRFAPHK----------VLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQY-PTIFSLGIKNLGQDTKYGSS 385 (438)
T ss_dssp HHHHHSCHHH----------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHH-HHHHHHHHSSCGGGHHHHHH
T ss_pred HHHHHhcchH----------HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH-HHHHHHHHhhccccccchhh
Confidence 9999999998 777777777777777776655544444444444433333 44444434444445888888
Q ss_pred HHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 374 ISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 374 ~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
+.. ...+++.++|.+.|.+.|.. ++++..|.+.+++.++..+..+..
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAA----------GNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHH----------TSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 777 77899999999999999998 238888887766655554443333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-40 Score=303.51 Aligned_cols=358 Identities=12% Similarity=0.084 Sum_probs=289.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhh
Q 013609 11 VILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFW 90 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 90 (439)
+..+++..++..++...+.+..|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 34567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhHHHH
Q 013609 91 LKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAE 170 (439)
Q Consensus 91 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~ 170 (439)
+++++ |++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+.+..+||+.|++.
T Consensus 82 ~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 82 AVTTS-SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHhc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 99997 99999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred hHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHHHHH
Q 013609 171 AALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFTFHY 250 (439)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (439)
+++.++..+...+..||++++++++ ++..+++++.+|+|+++...+..++...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETRPVDAPR---------------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLA 213 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCSTTTCCC---------------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcccCCCCccc---------------------------ccHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 8888777665556666665443111 1123345678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHh--h
Q 013609 251 ALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALM--A 328 (439)
Q Consensus 251 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 328 (439)
....+..+.|.|+++.+|.++.+.+.+.....++.+++..+.+++.||.+++. ...... ....+.. .
T Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~----------~~~~~~-~~~~~~~~~~ 282 (375)
T 2gfp_A 214 GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM----------WQSVIC-CLLAGLLMWI 282 (375)
T ss_dssp HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH----------HHHHHH-HHHTSSSSSH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH-HHHHHHHHHH
Confidence 99999999999999988999999999999999999999999999999887632 222211 1222222 1
Q ss_pred hccc--CChhHHHHH-HHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCC
Q 013609 329 LPIF--RSSNGAIFC-SSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLS 405 (439)
Q Consensus 329 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~ 405 (439)
.... ++.+..... .+.+.+. +...+.......+..||+|+++.|+.+...++|..++|.+.|.+.+..
T Consensus 283 ~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------- 353 (375)
T 2gfp_A 283 PDWFGVMNVWTLLVPAALFFFGA-GMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-------- 353 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH--------
T ss_pred HhhhccccHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Confidence 1111 122222222 2233333 334455555555655689999999999999999999999999998765
Q ss_pred CcccchhHHHHHHH
Q 013609 406 SPESWRAVFFIPGL 419 (439)
Q Consensus 406 ~~~~~~~~~~~~~~ 419 (439)
++...+.+.++
T Consensus 354 ---~~~~~~~~~~~ 364 (375)
T 2gfp_A 354 ---QGSLGLLMTLM 364 (375)
T ss_dssp ---HHHHHHHHHHH
T ss_pred ---cccHHHHHHHH
Confidence 67777666433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=302.89 Aligned_cols=411 Identities=14% Similarity=0.110 Sum_probs=286.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCC--------ccchhhhhhhhhhhhhhhcccccccccccCchHHHHH
Q 013609 8 YLIVILTFISTCVCYIERVGFSIAYTAAADAAGVN--------QSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLF 79 (439)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~ 79 (439)
+.+....+++.++.++|...++.++|.+.++++.+ ..+.|++.+++.+|..++++++|+++||+|||+++.+
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~ 90 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44445567788999999999999999999888542 3457899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC------------------CcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhh
Q 013609 80 SFVLWSSTCFWLKL------------------DPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTS 141 (439)
Q Consensus 80 ~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 141 (439)
+.+++.++++++++ ++ |+++++++|+++|++.|...+....+++|+.|+++|++..++.+.
T Consensus 91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~-~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG-YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence 99999999999884 65 899999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhhhhhcc--------cCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchh-
Q 013609 142 GMYLGAAMGMLFLPSLVKY--------NGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQK- 212 (439)
Q Consensus 142 ~~~~g~~~g~~~~~~l~~~--------~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 212 (439)
+..+|..+++.++..+... .+||..+.+..+..++.. ...+..||+|++...+.+.++..+...+...+.
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~ 248 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL 248 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence 9999999999888776542 347777776666655544 444577999988755555444332111111000
Q ss_pred ----hhhccccccccccCchHHhhhcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHH
Q 013609 213 ----VKVDNGGSAMKAAKIPWKRIVVNLPVWAI-VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFI 287 (439)
Q Consensus 213 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 287 (439)
..+.++..+.++.........+.++.... ....+.+....+.+..+.|.+.++ .+.+..+........++..++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 327 (491)
T 4gc0_A 249 ATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLT 327 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHH
Confidence 00000000011111111233334444433 333344445556666777777666 677777777777788899999
Q ss_pred HHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcc---cC-ChhHHHHHHHH-HHHhhhcccccccccccc
Q 013609 288 FSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPI---FR-SSNGAIFCSSI-ALGFLALGRAGFAVNHMD 362 (439)
Q Consensus 288 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 362 (439)
+.++.+++.||+|||+ ....+.....++++.+.. .. .....+...++ ..++.....+....+..|
T Consensus 328 ~~~~~~~l~dr~Grr~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 397 (491)
T 4gc0_A 328 FTVLAIMTVDKFGRKP----------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE 397 (491)
T ss_dssp HHHHHHHHHHHHCSHH----------HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcc----------hhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999998 666565555555444332 11 22222222222 222333333445567777
Q ss_pred cCC-ChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCc
Q 013609 363 IAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGER 436 (439)
Q Consensus 363 ~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (439)
..| +.|+++.|+.+..+++++.+++.+.+.+.+...... ..+....|++.+++++++.++.+++.+|+|
T Consensus 398 ~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-----~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 398 IFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-----HFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp SSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-----HHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 776 789999999999999999999998887765321000 013456788888888888877766655543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=287.30 Aligned_cols=406 Identities=14% Similarity=0.118 Sum_probs=278.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHH-HHHh-----hCCCccchhhhhhhhhhhhhhhcccccccccc-cCchHHHHHHH
Q 013609 9 LIVILTFISTCVCYIERVGFSIAYTA-AADA-----AGVNQSSKGTILSTFYYGYACSQVPGGWAAQK-IGGRKVLLFSF 81 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~ 81 (439)
..+..++...+...+......+..+. +.++ +|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 34455555666666666555555554 4444 99999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcc--cchhhHHHhhhhhHHHHHHhhhhhhhhc
Q 013609 82 VLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHE--RSRSVSLTTSGMYLGAAMGMLFLPSLVK 159 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 159 (439)
++.+++.+++++++ |++.++++|+++|++.+...+...++++|++|+++ |++++++.+.+.++|..++|.+++.+.+
T Consensus 93 ~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 93 VLIMLGHIVLALPF-GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp HHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999997 99999999999999999999999999999999988 7778888999999999999999999999
Q ss_pred ccCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccch--------------hhhhcccc-c----
Q 013609 160 YNGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQ--------------KVKVDNGG-S---- 220 (439)
Q Consensus 160 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~-~---- 220 (439)
..|||+.|++.++..++..+...+..|+..+++.++.+.++..++..+..+. ....+..+ +
T Consensus 172 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (491)
T 4aps_A 172 AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYIN 251 (491)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence 9999999999887776655555444333222211111100000000000000 00000000 0
Q ss_pred ----------------cccccCchHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHH
Q 013609 221 ----------------AMKAAKIPWKRIVVNLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLN 284 (439)
Q Consensus 221 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 284 (439)
..++...+..+..+....+...+..+.....+.....++|.|.++..+.+..+.+.......+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (491)
T 4aps_A 252 LLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLF 331 (491)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHH
Confidence 0000011101111223345555556666666677778899999988888878888999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccC---------ChhHHHH-HHHHHHHhhhcccc
Q 013609 285 MFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFR---------SSNGAIF-CSSIALGFLALGRA 354 (439)
Q Consensus 285 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~ 354 (439)
.+++.++.+++.||++||+. .+...+..+..+.++++..+.... +...... ..+.+.+..... +
T Consensus 332 ~~~~~~~~~~l~~r~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~-~ 405 (491)
T 4aps_A 332 IMLYTPFFAWLWTAWKKNQP-----SSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLIS-P 405 (491)
T ss_dssp HHHHHHHHHHHHHHTTTC--------CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTT-T
T ss_pred HHHHHHHHHHHHHHHhccCC-----CchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHh-H
Confidence 99999999999999999861 112234466666666666554421 2222222 223333333333 3
Q ss_pred cccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhcc
Q 013609 355 GFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 355 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
.......+ .|++.|+++.|+.+...++|..++|.+.+.+.+. ++...|.+.+++++++.+..+...+
T Consensus 406 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 406 VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK------------SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS------------STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 5557899999999999999999999999887764 4667787777777777666655443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=271.45 Aligned_cols=381 Identities=13% Similarity=0.116 Sum_probs=254.6
Q ss_pred HHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHh---h
Q 013609 15 FISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCF---W 90 (439)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~---~ 90 (439)
....+..........+.+|. +.+++|.|+.+.|++.+.+.+++.++++++|+++||+|||+++.++..+.+++.. .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~ 92 (417)
T 2cfq_A 13 GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI 92 (417)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555566666 4566999999999999999999999999999999999999999998887655321 1
Q ss_pred hcCCcchH-HHHHHHHHHHhhhcccchhhHHHHhhhccCC--cccchhhHHHhhhhhHHHHHHhhhhhhhhcccCCchhH
Q 013609 91 LKLDPNNV-FILVVARLLVGVSQGFIFPSIHTVLAQWVPP--HERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVF 167 (439)
Q Consensus 91 ~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~wr~~f 167 (439)
+.+++ .. ..+...+.+.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+.+ .+||+.|
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f 170 (417)
T 2cfq_A 93 FIFGP-LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVF 170 (417)
T ss_dssp HTHHH-HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHH
Confidence 12222 11 1234556666666555444444444444432 456778888888899999999999999887 6899999
Q ss_pred HHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHHHHHH
Q 013609 168 NAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVVNNFT 247 (439)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (439)
++.++..++..+..++..||++++. ++ ++..+ +++++....++++++|+|+++...+..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (417)
T 2cfq_A 171 WLGSGCALILAVLLFFAKTDAPSSA-TV---ANAVG---------------ANHSAFSLKLALELFRQPKLWFLSLYVIG 231 (417)
T ss_dssp TTTTTTTTTHHHHSCSSCCCCSCSS-CS---SSSSS---------------SCCCCCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccccc-cc---ccccc---------------cccccccHHHHHHHhcCCchhhHHHHHHH
Confidence 9887775554444433333332211 00 00000 00011112345678899999887776666
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC---cccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHH
Q 013609 248 FHYALYVLMNWLPTYFELGLQL---SLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASI 324 (439)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (439)
....+..+..++|.|+++.++. +..+.+.......++.+++.++.+++.||+++|+ .+..+..+.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~----------~l~~~~~~~~~ 301 (417)
T 2cfq_A 232 VSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN----------ALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH----------HHHHHHHHHHH
Confidence 6666666777889998775542 2344566677777888899999999999999998 66677777777
Q ss_pred HHhhhcccCChhHHHHHHHHHHHhhhcccccccccccccCC-ChhhHHHHHH-HHHhhhhHHHHHHHHHHhhcccccccc
Q 013609 325 ALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDIAP-RYAGIVMGIS-NTAGTLAGIVGVDMTGKLLEAAKTTYS 402 (439)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~-~~~~~~g~~i~~~~~g~l~~~~~~~~~ 402 (439)
..+.+...++.........+.........+....+..|..| +.|+++.+.. +...++|+.++|.+.|.+.|..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~----- 376 (417)
T 2cfq_A 302 RIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----- 376 (417)
T ss_dssp HHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-----
Confidence 66666555444433322222111111111222345555544 7899999994 8888899999999999999977
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 013609 403 DLSSPESWRAVFFIPGLLCILSSFVFLLFSTGERI 437 (439)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (439)
+++..|.+.+++.+++.++.+...+++|.
T Consensus 377 ------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 377 ------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred ------CcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 78889999888888887776665554443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=252.09 Aligned_cols=413 Identities=13% Similarity=0.091 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH-HHHhhC------CCccchhhhhhhhhhhhhhhccccccccccc-CchHHHHHHHHH
Q 013609 12 ILTFISTCVCYIERVGFSIAYTA-AADAAG------VNQSSKGTILSTFYYGYACSQVPGGWAAQKI-GGRKVLLFSFVL 83 (439)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~ 83 (439)
..+.+..++..+......+.++. +.+++| .+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~ 94 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34455556666666555566655 667899 9999999999999999999999999999999 999999999999
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHH---HhhhhhHHHHHHhhhhhhhhcc
Q 013609 84 WSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSL---TTSGMYLGAAMGMLFLPSLVKY 160 (439)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~ 160 (439)
.+++.+++++++.+++.+++.|+++|++.+...+...+++.|++|+++|++..+. .+...++|..++|.+++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998832799999999999999999999999999999999999876666 8999999999999999999988
Q ss_pred cCCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccC-------ccCcccchhh--h-----------hcc-cc
Q 013609 161 NGPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGE-------SLLPMRDQKV--K-----------VDN-GG 219 (439)
Q Consensus 161 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~-----------~~~-~~ 219 (439)
.+||+.|++.+++.++..+..++..++.++++.++.+..+..+ +.....+... . ... .+
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPT 254 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccch
Confidence 9999999998887766555444333322211111000000000 0000000000 0 000 00
Q ss_pred -------------ccccccCchHH------------hhhcchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhCCcc
Q 013609 220 -------------SAMKAAKIPWK------------RIVVNLPVWAIVVNNF---TFHYALYVLMNWLPTYFELGLQLSL 271 (439)
Q Consensus 220 -------------~~~~~~~~~~~------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~ 271 (439)
..+++...+++ +..+.++.+....... .....+......++.+..+ .+.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 333 (524)
T 2xut_A 255 LGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND-MVKPQ 333 (524)
T ss_dssp TCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH-SCCCS
T ss_pred hhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh-cCCCe
Confidence 00000000110 0111222222111111 1111111112223333332 22221
Q ss_pred -cccchhhhhhHHHHHHHHHHHHHHH----HHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccC---------ChhH
Q 013609 272 -QEMGSSKMMPYLNMFIFSNIGGVVA----DHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFR---------SSNG 337 (439)
Q Consensus 272 -~~~~~~~~~~~~~~~~~~~~~g~l~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 337 (439)
...+.+.....+..++...+.+++. ||.++|. .++..+..+.++.+++++.+.... +.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (524)
T 2xut_A 334 WFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL------TALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFW 407 (524)
T ss_dssp SSCHHHHHTTSGGGHHHHGGGTTTC------------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHH
T ss_pred eecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHH
Confidence 1345555555566666666665543 3333221 111245566666666666655431 2222
Q ss_pred HH-HHHHHHHHhhhcccccccccccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCcccc-hhHHH
Q 013609 338 AI-FCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESW-RAVFF 415 (439)
Q Consensus 338 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~-~~~~~ 415 (439)
.. ...+.+.+.....+.......+..|+++|++++|+.+...++|+.++|.+.|.+.+..+.+..+.+ ..+. ...|+
T Consensus 408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~ 486 (524)
T 2xut_A 408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQT-GMSVTAFQMF 486 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHH-HSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-cccccccHHH
Confidence 22 233333333333333344444455668999999999999999999999999999874310000000 0011 23366
Q ss_pred HHHHHHHHHHHHHHHhc
Q 013609 416 IPGLLCILSSFVFLLFS 432 (439)
Q Consensus 416 ~~~~~~~~~~~~~~~~~ 432 (439)
+.+++.+++.++.+...
T Consensus 487 ~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 487 FFAGFAILAAIVFALYA 503 (524)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777666655543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-15 Score=138.89 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHh-hCCCccchhhhhhhhhhhhhhhccccccccccc--CchHHHHHHHHHHH-
Q 013609 10 IVILTFISTCVCYIERVGFSIAYTAAADA-AGVNQSSKGTILSTFYYGYACSQVPGGWAAQKI--GGRKVLLFSFVLWS- 85 (439)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~- 85 (439)
.+....+..++............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 332 (451)
T 1pw4_A 253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 34455556666666666777788887766 899999999999999999999999999999999 99999988877766
Q ss_pred HHHhhhcCCcc-hHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhH-HHHHHhhhhhhhhcccCC
Q 013609 86 STCFWLKLDPN-NVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYL-GAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 86 ~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~w 163 (439)
++.++..+.++ +.+.+.+.-++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 77777777642 6788888889999998888899999999999999999999999999999 999999999999999999
Q ss_pred chhHHHHhHHHHHHHHHHhhhc
Q 013609 164 NSVFNAEAALGGMWSLLWFKYA 185 (439)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~ 185 (439)
+..|++.+++.++..++.++..
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877666555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=135.87 Aligned_cols=149 Identities=10% Similarity=0.016 Sum_probs=126.0
Q ss_pred ccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhhHHHH
Q 013609 43 QSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHTV 122 (439)
Q Consensus 43 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 122 (439)
..+.++..+...++..++.++.|+++||+|||+++..+..+.+++..+.++.+ +.+.+++...+.+++.+...+....+
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-SALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC-SHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888889999999999999999999999988888888888886 78888888888888877777778899
Q ss_pred hhhccCCcccchhhHH-HhhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccCCCCCC
Q 013609 123 LAQWVPPHERSRSVSL-TTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDPPRSE 192 (439)
Q Consensus 123 i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (439)
++|.+|++.|+++.+. .+....+|..++|.+++.+.+..|++..|.+.+++.++..++.++..||+++.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 9999999999999998 488889999999999999998888999999888888777666665666544443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-13 Score=128.70 Aligned_cols=175 Identities=13% Similarity=0.106 Sum_probs=141.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCcccccchhhhhhHHHHHHHHHHHHHHHHH-hhhccccchhh
Q 013609 236 LPVWAIVVNNFTFHYALYVLMNWLPTYFELG-----LQLSLQEMGSSKMMPYLNMFIFSNIGGVVADH-LITKRILSVTR 309 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~ 309 (439)
|.++......++....++....+++.|+++. +|.+..+.+++.+...++..++.++.|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 4567777788888888999999999999998 89999999999999999999999999999999 89999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCCh--hhHHHHHHHHHhhhhHHHH
Q 013609 310 TRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRY--AGIVMGISNTAGTLAGIVG 386 (439)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~g~~~~~~~~g~~i~ 386 (439)
.+..+.++..++.+.....++.+......++.....+...+.......| .++++ |+.+.++.+...++|..++
T Consensus 87 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 162 (491)
T 4aps_A 87 ----AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA 162 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence 8888888888888888887776655554444333333333444555555 45566 8888998999999999999
Q ss_pred HHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 387 VDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 387 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
|.+.+.+.+.. +|+..|++.++..+++.+.....
T Consensus 163 ~~~~~~l~~~~-----------g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 163 PLIVGAAQEAA-----------GYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHS-----------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhh-----------hHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987 89999999888777776666544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=122.85 Aligned_cols=183 Identities=13% Similarity=0.097 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHH
Q 013609 238 VWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTV 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 317 (439)
+....+..+.............|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+ .+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~----------~l~~ 96 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA----------GIIT 96 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH----------HHHH
Confidence 3445555566666666777778876555 9999999999999999999999999999999999999 8888
Q ss_pred HHHHHHHHHhhh---cccCChhHHHHHHHHHHHhhhccccccccccccc-CCChhhHHHHHHHHHhhhhHHHHHHHHHHh
Q 013609 318 GFMVASIALMAL---PIFRSSNGAIFCSSIALGFLALGRAGFAVNHMDI-APRYAGIVMGISNTAGTLAGIVGVDMTGKL 393 (439)
Q Consensus 318 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 393 (439)
+.++.+++.++. ...++.+..+...++.....+...+....+..|. ++|+|+++.++.+....+|..++|.+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777 6666666555544443333333334444555554 558999999999999999999999999999
Q ss_pred h-cccccccc------C--------CCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 394 L-EAAKTTYS------D--------LSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 394 ~-~~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
. +..+.... + .....+|+..|.+.++..++..+..+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 177 ILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp HHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 54410000 0 0000018888887777766665555544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=126.73 Aligned_cols=176 Identities=15% Similarity=0.076 Sum_probs=136.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CcccccchhhhhhHHHHHHHHHHHHHHHHHh-hhccccch
Q 013609 235 NLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQ------LSLQEMGSSKMMPYLNMFIFSNIGGVVADHL-ITKRILSV 307 (439)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~ 307 (439)
+|.++...+..++....++....+++.|+++.+| .++.+.+++.+...++..++.++.|+++||+ |||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~---- 86 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN---- 86 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----
Confidence 3556777788888888889999999999998889 9999999999999999999999999999999 9998
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcccC-ChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHH---HHHHhhhh
Q 013609 308 TRTRKFLNTVGFMVASIALMALPIFR-SSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGI---SNTAGTLA 382 (439)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~---~~~~~~~g 382 (439)
.+..+.++..++.++....+ +.+......++.....+...+.......+ .++++|++..+. .+...++|
T Consensus 87 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g 160 (524)
T 2xut_A 87 ------TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFG 160 (524)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHH
Confidence 78888888888887777776 55544444333332333333444444455 455788766655 89999999
Q ss_pred HHHHHHHHHHhhccccccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 383 GIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 383 ~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
..++|.+.+.+.+.. +|+..|.+.++..+++.+..+..
T Consensus 161 ~~~g~~~~~~l~~~~-----------g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 161 SFFASLSMPLLLKNF-----------GAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHTSTHHHHTS-----------CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhccc-----------cHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999876 89999998888877766665443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.9e-13 Score=121.33 Aligned_cols=167 Identities=14% Similarity=0.058 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHH
Q 013609 240 AIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGF 319 (439)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 319 (439)
...+..++.......+...+|.+.++ +|.|+.+.+++.+...++..++.++.|+++||+|||+ .+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~----------~~~~~~ 72 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP----------VILVGM 72 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC----------CCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch----------hHHHHH
Confidence 44555666677777777788877655 8999999999999999999999999999999999999 777777
Q ss_pred HHHHHHHhhhcccCChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhcccc
Q 013609 320 MVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAK 398 (439)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 398 (439)
.+..++.......++.+.......+.....+...+.......| .++|+|+++.+..+....+|..++|.+.+.+.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~- 151 (375)
T 2gfp_A 73 SIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW- 151 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-
Confidence 7777777777666555544444333333333333444444455 45689999999999999999999999999999877
Q ss_pred ccccCCCCcccchhHHHHHHHHHHHHHHHH
Q 013609 399 TTYSDLSSPESWRAVFFIPGLLCILSSFVF 428 (439)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (439)
+|+..+.+.++..++..+..
T Consensus 152 ----------~~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 152 ----------NWRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp ----------HHHHHHHHHHHHHHHHHCCC
T ss_pred ----------cHHHHHHHHHHHHHHHHHHH
Confidence 89999998888777665533
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.7e-12 Score=119.05 Aligned_cols=178 Identities=10% Similarity=0.072 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcC
Q 013609 14 TFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKL 93 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 93 (439)
.....+........+....|.+.++.+.+..+.........+...++.++.+.+.||+|||+.++.+.....++.+..+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~ 361 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 361 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence 33334444444455566677788888888777777777888889999999999999999999999888777766655432
Q ss_pred C----cchHHHHH-HHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhc------ccC
Q 013609 94 D----PNNVFILV-VARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVK------YNG 162 (439)
Q Consensus 94 ~----~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------~~~ 162 (439)
. .++...+. ..-+..+++.+ ..+....+.+|.+|.+.|++++|+......+|..+++.+.+.+.+ ..+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~ 440 (491)
T 4gc0_A 362 AFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH 440 (491)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred HHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 11222222 22222333333 457888999999999999999999999999999998887766543 356
Q ss_pred CchhHHHHhHHHHHHHHHHhhhccCCCCCC
Q 013609 163 PNSVFNAEAALGGMWSLLWFKYATDPPRSE 192 (439)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (439)
+...|++.++++++..+..+++.||++.+.
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred hhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 778899999999988888888999876543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 439 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-21 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 4e-05 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 93.6 bits (231), Expect = 2e-21
Identities = 73/435 (16%), Positives = 154/435 (35%), Gaps = 27/435 (6%)
Query: 7 RYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGW 66
R+ I + F Y+ R F++A + G ++ G LS Y S+ G
Sbjct: 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGS 81
Query: 67 AAQKIGGRKVLLFSFVLWSSTCFWLKLDP---NNVFILVVARLLVGVSQGFIFPSIHTVL 123
+ + R L +L ++ ++ P +++ ++ V L G QG +P +
Sbjct: 82 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141
Query: 124 AQWVPPHERSRSVSLTTSGMYLGAA-MGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWF 182
W ER VS+ +G +LFL + +N ++ A + +L F
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201
Query: 183 KYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIV 242
D P+S + ++ + + A +I + ++ N +W I
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ------ELTAKQIFMQYVLPNKLLWYIA 255
Query: 243 VNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITK 302
+ N + Y +++W PTY + +L + + + + + G ++D +
Sbjct: 256 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG 315
Query: 303 RILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHMD 362
R + + + + + + + + C + + ++ ++
Sbjct: 316 N-----RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 370
Query: 363 IAP-RYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLC 421
+AP + AG G + G L G V AA W F +
Sbjct: 371 LAPKKAAGTAAGFTGLFGYLGGSV----------AASAIVGYTVDFFGWDGGFMVMIGGS 420
Query: 422 ILSSFVFLLFSTGER 436
IL+ + ++ GE+
Sbjct: 421 ILAVILLIVVMIGEK 435
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 43.2 bits (100), Expect = 4e-05
Identities = 46/435 (10%), Positives = 96/435 (22%), Gaps = 31/435 (7%)
Query: 2 MNFPKRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQ 61
M + K + +I F D +++S G I + Q
Sbjct: 1 MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQ 60
Query: 62 VPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPSIHT 121
G + K+G RK LL+ F +L L+ + G
Sbjct: 61 PLFGLLSDKLGLRKYLLWIITGM-LVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFN 119
Query: 122 VLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLW 181
A V S + + ALG +
Sbjct: 120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW------------------ALGASIVGIM 161
Query: 182 FKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAI 241
F + D + ++ + L
Sbjct: 162 FTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPK 221
Query: 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLIT 301
+ + + + F + + + +
Sbjct: 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL 281
Query: 302 KRILSVTRTRKFLNTVGFMVASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVNHM 361
+ L V I + FL +G + +
Sbjct: 282 IINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341
Query: 362 DIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPESWRAVFFIPGLLC 421
++ A I + LA I + G + E+ ++ + + GL+
Sbjct: 342 EVRFS-ATIYLVCFCFFKQLAMIFMSVLAGNMYESI-----------GFQGAYLVLGLVA 389
Query: 422 ILSSFVFLLFSTGER 436
+ + + + +G
Sbjct: 390 LGFTLISVFTLSGPG 404
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 439 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.56 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.43 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-41 Score=321.66 Aligned_cols=401 Identities=16% Similarity=0.236 Sum_probs=305.1
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHH
Q 013609 6 KRYLIVILTFISTCVCYIERVGFSIAYTAAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWS 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 85 (439)
.+|.++..++++++..++++..++.+.|.+. |+|+|++|.|++.+++.+++.++++++|+++||+|||+++..+.++.+
T Consensus 22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~ 100 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 100 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 4688888888999999999999999999875 689999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCc---chHHHHHHHHHHHhhhcccchhhHHHHhhhccCCcccchhhHHHhhhhhHHHHHHhhhhhhhhcc-c
Q 013609 86 STCFWLKLDP---NNVFILVVARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLFLPSLVKY-N 161 (439)
Q Consensus 86 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~ 161 (439)
++.+++++++ ++++.+++.|++.|++.+...+...+++.|++|+|+|++++++.+.+..+|..+++.+++.+.+. .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 180 (447)
T d1pw4a_ 101 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180 (447)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh
Confidence 9999888763 26789999999999999999999999999999999999999999999999999999998877664 5
Q ss_pred CCchhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHH
Q 013609 162 GPNSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAI 241 (439)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (439)
+||+.|++.+.+.++..++.+...+|+|++......++...+...+.. ++.+++........++.+++|.++..
T Consensus 181 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (447)
T d1pw4a_ 181 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYN------EKAEQELTAKQIFMQYVLPNKLLWYI 254 (447)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------------CCTHHHHHHTSSCHHHHHH
T ss_pred cccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchh------hccccccchhhHHHHHHHcCchHHHH
Confidence 899999999999888888888888887766533222221111111100 01111222333445678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHH
Q 013609 242 VVNNFTFHYALYVLMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMV 321 (439)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 321 (439)
....++.....+....+.|.|+++.++.+..+.+.......+..+++.++.|++.||.++++ +.........+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~ 327 (447)
T d1pw4a_ 255 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN-------RGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC-------HHHHHHHHHHH
T ss_pred HHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc-------cccccchhHHH
Confidence 99999999999999999999999989999999999999999999999999999999999877 12222222222
Q ss_pred HHHHHhhhccc--CChhHHHHHHHHHHHhhhcccccccccccc-cCCChhhHHHHHHHHHhhhh-HHHHHHHHHHhhccc
Q 013609 322 ASIALMALPIF--RSSNGAIFCSSIALGFLALGRAGFAVNHMD-IAPRYAGIVMGISNTAGTLA-GIVGVDMTGKLLEAA 397 (439)
Q Consensus 322 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g-~~i~~~~~g~l~~~~ 397 (439)
........... .+........++.........+.......| .+++.|+++.|+.+.+.+++ ..++|.+.|.+.|..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~ 407 (447)
T d1pw4a_ 328 VTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 407 (447)
T ss_dssp HHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333222 233332222222222222222333444444 45588999999999998885 466899999999998
Q ss_pred cccccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 013609 398 KTTYSDLSSPESWRAVFFIPGLLCILSSFVFLLF 431 (439)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (439)
+++..+.+.+++.+++.++...+
T Consensus 408 -----------g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 408 -----------GWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp -----------CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------ChHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888777766665555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.2e-30 Score=242.26 Aligned_cols=385 Identities=12% Similarity=0.097 Sum_probs=268.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHH-HHHhhCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHh
Q 013609 11 VILTFISTCVCYIERVGFSIAYTA-AADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCF 89 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 89 (439)
.+.+.+..+...+......+.+|. +.+++|.|++|+|++.+++.+++.++++++|+++||+||||+++++..+..++..
T Consensus 9 ~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~ 88 (417)
T d1pv7a_ 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA 88 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 444556667777777788888887 5677999999999999999999999999999999999999999999999998888
Q ss_pred hhcCCcchHHH----HHHHHHHHhhhcccchhhHHHHhhhccCC--cccchhhHHHhhhhhHHHHHHhhhhhhhhcccCC
Q 013609 90 WLKLDPNNVFI----LVVARLLVGVSQGFIFPSIHTVLAQWVPP--HERSRSVSLTTSGMYLGAAMGMLFLPSLVKYNGP 163 (439)
Q Consensus 90 ~~~~~~~~~~~----l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 163 (439)
+..+.. +... .++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+ .+|
T Consensus 89 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 166 (417)
T d1pv7a_ 89 PFFIFI-FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INN 166 (417)
T ss_dssp HHHHHT-HHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-HCH
T ss_pred HHHHhh-hhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc-ccc
Confidence 887775 4443 34555555555555555555444444332 355667788888889999999999988876 566
Q ss_pred chhHHHHhHHHHHHHHHHhhhccCCCCCCCCCCCcccccCccCcccchhhhhccccccccccCchHHhhhcchhHHHHHH
Q 013609 164 NSVFNAEAALGGMWSLLWFKYATDPPRSEHPKASAAGFGESLLPMRDQKVKVDNGGSAMKAAKIPWKRIVVNLPVWAIVV 243 (439)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (439)
+..+........+..++..+..+|++++.+++.++++ .+++.......+..+++..+....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 227 (417)
T d1pv7a_ 167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA-------------------NHSAFSLKLALELFRQPKLWFLSL 227 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHS-------------------CCCCCCHHHHHHHTTSSHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHhcccccchhhhhhhhh-------------------hcccccccccccccccccccchhh
Confidence 6667666666666666666666666655433222111 111112222334455555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHH
Q 013609 244 NNFTFHYALYVLMNWLPTYFEL---GLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFM 320 (439)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 320 (439)
................+.+... ..+.+....+.......++..++..+.+++.||.++++ ....+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~----------~~~~~~~ 297 (417)
T d1pv7a_ 228 YVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN----------ALLLAGT 297 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH----------HHHHHHH
T ss_pred hhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccccc----------chhhhHH
Confidence 4444444444444444443332 12334555667777788889999999999999999998 8888888
Q ss_pred HHHHHHhhhcccCChhHHHHHHHHHHHhhhccccccccc-ccccCCChhhHHHHHHH-HHhhhhHHHHHHHHHHhhcccc
Q 013609 321 VASIALMALPIFRSSNGAIFCSSIALGFLALGRAGFAVN-HMDIAPRYAGIVMGISN-TAGTLAGIVGVDMTGKLLEAAK 398 (439)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~~~g~~i~~~~~g~l~~~~~ 398 (439)
+.++..+.+...++.+......++.....+...+..... .+..++|.|+++.|+.. ....+|..++|.+.|++.|..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~- 376 (417)
T d1pv7a_ 298 IMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI- 376 (417)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 888888888887777665555444333333333444444 44456689999999864 556799999999999999998
Q ss_pred ccccCCCCcccchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 013609 399 TTYSDLSSPESWRAVFFIPGLLCILSSFVFLLFSTGERI 437 (439)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (439)
|++.++++.+++.++..++..+..|+++.
T Consensus 377 ----------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 377 ----------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 89999999988888777777666655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.9e-15 Score=138.62 Aligned_cols=149 Identities=10% Similarity=0.027 Sum_probs=133.1
Q ss_pred hCCCccchhhhhhhhhhhhhhhcccccccccccCchHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhcccchhh
Q 013609 39 AGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRKVLLFSFVLWSSTCFWLKLDPNNVFILVVARLLVGVSQGFIFPS 118 (439)
Q Consensus 39 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 118 (439)
.+.+..+.+...+...++..++..+.+++.||+|+|+.+..+.++.+++.+...+.+ +.+.+++..++.|++.+...+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~ 332 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-SALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc-ccchhhHHHHHHHHHHHHHHHH
Confidence 334556678888889999999999999999999999999999999999999999997 8999999999999999999999
Q ss_pred HHHHhhhccCCcccchhhHHH-hhhhhHHHHHHhhhhhhhhcccCCchhHHHHhHHHHHHHHHHhhhccCC
Q 013609 119 IHTVLAQWVPPHERSRSVSLT-TSGMYLGAAMGMLFLPSLVKYNGPNSVFNAEAALGGMWSLLWFKYATDP 188 (439)
Q Consensus 119 ~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~ 188 (439)
..+++.|.+|+|+|++..+.. +....+|..++|.+.|.+.|..||+..|++.+++.++..++..+..+++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999985 5677899999999999999999999999999988887777666666443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1.2e-12 Score=121.29 Aligned_cols=157 Identities=14% Similarity=0.134 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhhCCcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHhhhcccC-
Q 013609 255 LMNWLPTYFELGLQLSLQEMGSSKMMPYLNMFIFSNIGGVVADHLITKRILSVTRTRKFLNTVGFMVASIALMALPIFR- 333 (439)
Q Consensus 255 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 333 (439)
+....| +++| +|+|..+.+++.+...++..++.++.|+++||+|||+ .+..+.++.+++.++....+
T Consensus 44 ~~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~----------~~~~~~~~~~~~~~~~~~~~~ 111 (447)
T d1pw4a_ 44 FALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV----------FLPAGLILAAAVMLFMGFVPW 111 (447)
T ss_dssp HHHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH----------HHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH----------HHHHHHHHHHHHHhhccccch
Confidence 344444 5555 7999999999999999999999999999999999999 88888888877776665442
Q ss_pred ---ChhHHHHHHHHHHHhhhccccccccc-ccccCCChhhHHHHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCccc
Q 013609 334 ---SSNGAIFCSSIALGFLALGRAGFAVN-HMDIAPRYAGIVMGISNTAGTLAGIVGVDMTGKLLEAAKTTYSDLSSPES 409 (439)
Q Consensus 334 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~ 409 (439)
+.......-.+.....+...+..... .+..++++|+++.|+.+....+|..++|.+.+.+.+.. ++
T Consensus 112 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~----------~~ 181 (447)
T d1pw4a_ 112 ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF----------ND 181 (447)
T ss_dssp HHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT----------CC
T ss_pred hhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh----------hc
Confidence 33333333333222223333344444 44456689999999999999999999999999888776 47
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcc
Q 013609 410 WRAVFFIPGLLCILSSFVFLLFST 433 (439)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ 433 (439)
|+..+++.+.+.++..++.+...+
T Consensus 182 w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 182 WHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp STTCTHHHHHHHHHHHHHHHHHCC
T ss_pred ccccchhhhhhHHHHHHHHHHhcc
Confidence 899888888777776666665544
|