Citrus Sinensis ID: 013701

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MEVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLNH
cccccHHHHHHHHHHHcccEEEEEcccccccccEEEEccHHHHHHHHHHHccccccEEEEcccccccEEEEEEEEcccccEEEcccccEEEEccEEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEccccEEEEEcccccccccccccccccccHHHHHHHHHHcccccccccccccEEEEEccccccccccHHHHHHHHHHHHcccccEEEEccccccccccccccEEEccccHHHHHHHHHHccccccccccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccEEEEccccccccccHHHHHHHccccccEEEEEEEccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccHHHHHHHHHHccccEEEEEccccccccccEEEccHHHHHHHHHHHccccccEEEEEEcccHEEEEEEEEEcccccEEEEEcEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEccccHHHccHHHHccccHHHHHHHHHcccccccccccccEEEEEEHccccccHHHHHHHHHHHHHHHcccccEEEEEcccHccccccEEEEEEEcccHHHHHHHHHHHHccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHccccEEEEEEcccccccHHHHHHHHccccccccEEcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
MEVNDLESAWRagkqfgyplmvkskrlaydgrgnavAKSEEELSSAITALggfdrglyvekwAPFVKELAVIVVRGrdksilcypvvetIHKEnichivkapaavpwkISELATDVAHKAVSSLEGAGIFAVELFWtnngqillnevaprphnsghhtiescyTSQFEQHMRAVvglplgdpsmktPAAIMYNLLGEAEGERGFYLAHQLIGkalsipgatvhwydkpemrqqrkmghiTIVGSSMGLVESRLNSLlkedssdcqfktvlprigiimgsdsdlpvMKDAAKILTMFSVPhevrivsahrtpdlMFSYASSAHERGIEIIIAGaggaahlpgmvaartplpvigvpvrasaldgLDSLLSIvqmprgvpvATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLNH
mevndlesawragkqfgyplmVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKlqkdgwesylnh
MEVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERgieiiiagaggaaHLPGMVAARTPLPVIGVPVRasaldgldsllsIVQMPRGVPvatvainnatnaGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLNH
*********WRAGKQFGYPLMVKSKRLAYDG************SSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEM***RKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQ****************************
**VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLN************KTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQY**************LQKDGWESYLN*
********AWRAGKQFGYPLMVKSKRLAYDGR*********ELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLNH
*EVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLNH
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLNH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query438 2.2.26 [Sep-21-2011]
P55195557 Phosphoribosylaminoimidaz N/A no 0.993 0.780 0.714 0.0
P15567552 Phosphoribosylaminoimidaz yes no 0.958 0.760 0.559 1e-132
P50504557 Phosphoribosylaminoimidaz N/A no 0.970 0.763 0.554 1e-129
Q92210568 Phosphoribosylaminoimidaz N/A no 0.984 0.758 0.531 1e-125
O74197570 Phosphoribosylaminoimidaz yes no 0.974 0.749 0.524 1e-125
P21264571 Phosphoribosylaminoimidaz yes no 0.965 0.740 0.522 1e-125
P0CQ36582 Phosphoribosylaminoimidaz yes no 0.984 0.740 0.501 1e-115
P0CQ37582 Phosphoribosylaminoimidaz N/A no 0.986 0.742 0.497 1e-115
P0C017582 Phosphoribosylaminoimidaz N/A no 0.986 0.742 0.497 1e-115
Q01930543 Phosphoribosylaminoimidaz N/A no 0.890 0.718 0.545 1e-114
>sp|P55195|PUR6_VIGAC Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment) OS=Vigna aconitifolia GN=PURKE PE=2 SV=1 Back     alignment and function desciption
 Score =  637 bits (1644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/438 (71%), Positives = 360/438 (82%), Gaps = 3/438 (0%)

Query: 1   MEVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVE 60
           M+++DL++  +         M+KS+RLAYDGRGN VAKSEEELSSA+ ALGGFDRGLY E
Sbjct: 122 MKIDDLKA--KKWDSLDIHFMIKSRRLAYDGRGNFVAKSEEELSSAVDALGGFDRGLYAE 179

Query: 61  KWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKA 120
           KWAPFVKELAVIV RGRD SI CYPVVE +   +ICHIVK+PA V WK  ELA +VA  A
Sbjct: 180 KWAPFVKELAVIVARGRDNSISCYPVVE-LFTGHICHIVKSPANVNWKTRELAIEVAFNA 238

Query: 121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLG 180
           V SLE  G+FAVELF T  G+ILLNEVAPRPHNSGHHTIESC+TSQFEQH+ AVVGLPLG
Sbjct: 239 VKSLEVPGVFAVELFLTKEGEILLNEVAPRPHNSGHHTIESCHTSQFEQHLPAVVGLPLG 298

Query: 181 DPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHIT 240
           DPSMKTPAAIMYN+LGE EGE GF LAHQL+ +A++IPGA+VHWYDKPEMR+QRKM HIT
Sbjct: 299 DPSMKTPAAIMYNILGEEEGEHGFQLAHQLMKRAMTIPGASVHWYDKPEMRKQRKMCHIT 358

Query: 241 IVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPH 300
           IVGSS+  +ES L  LL+      +       +G IMGSDSDLPVMK AA+++ MF VPH
Sbjct: 359 IVGSSLSSIESNLAILLEGKGLHDKTAVCSTLLGFIMGSDSDLPVMKSAAEMMEMFGVPH 418

Query: 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASA 360
           EVRIVSAHRTP+LMF YASSAHERG ++IIAGAGGAAHLPGMVA+ TPLPV+GVPVRAS 
Sbjct: 419 EVRIVSAHRTPELMFCYASSAHERGYQVIIAGAGGAAHLPGMVASLTPLPVVGVPVRAST 478

Query: 361 LDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDV 420
           LDGLDSLLSIVQMPRGVPVATVA+NNATNAGLLAVRMLG  + +L +RM QY ED ++ V
Sbjct: 479 LDGLDSLLSIVQMPRGVPVATVAVNNATNAGLLAVRMLGVANDNLLSRMSQYQEDQKEAV 538

Query: 421 LTKAEKLQKDGWESYLNH 438
           L + +KL+K GWESYL +
Sbjct: 539 LREGDKLEKHGWESYLKN 556

Vigna aconitifolia (taxid: 3918)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1
>sp|P15567|PUR6_SCHPO Phosphoribosylaminoimidazole carboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ade6 PE=3 SV=1 Back     alignment and function description
>sp|P50504|PUR6_SCHOC Phosphoribosylaminoimidazole carboxylase OS=Schwanniomyces occidentalis GN=ADE2 PE=3 SV=1 Back     alignment and function description
>sp|Q92210|PUR6_CANAL Phosphoribosylaminoimidazole carboxylase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ADE2 PE=3 SV=2 Back     alignment and function description
>sp|O74197|PUR6_CANGA Phosphoribosylaminoimidazole carboxylase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ADE2 PE=3 SV=2 Back     alignment and function description
>sp|P21264|PUR6_YEAST Phosphoribosylaminoimidazole carboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADE2 PE=1 SV=1 Back     alignment and function description
>sp|P0CQ36|PUR6_CRYNJ Phosphoribosylaminoimidazole carboxylase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ADE2 PE=3 SV=1 Back     alignment and function description
>sp|P0CQ37|PUR6_CRYNB Phosphoribosylaminoimidazole carboxylase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ADE2 PE=3 SV=1 Back     alignment and function description
>sp|P0C017|PUR6_CRYNH Phosphoribosylaminoimidazole carboxylase OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=ADE2 PE=2 SV=1 Back     alignment and function description
>sp|Q01930|PUR6_OGAME Phosphoribosylaminoimidazole carboxylase OS=Ogataea methanolica GN=ADE1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query438
255561879 629 phosphoribosylaminoimidazole carboxylase 0.988 0.688 0.820 0.0
359487998 634 PREDICTED: phosphoribosylaminoimidazole 0.995 0.687 0.839 0.0
296087911 591 unnamed protein product [Vitis vinifera] 0.995 0.737 0.839 0.0
147859592 604 hypothetical protein VITISV_024806 [Viti 0.981 0.711 0.826 0.0
224123484 605 predicted protein [Populus trichocarpa] 0.995 0.720 0.826 0.0
224116032 625 predicted protein [Populus trichocarpa] 0.981 0.688 0.753 0.0
42569706 642 phosphoribosylaminoimidazole carboxylase 0.993 0.677 0.760 0.0
37983592 621 phosphoribosylaminoimidazole carboxylase 0.995 0.702 0.787 0.0
13173434 623 phosphoribosylaminoimidazole carboxylase 0.995 0.699 0.787 0.0
3236251 645 putative phosphoribosylaminoimidazole ca 0.993 0.674 0.755 0.0
>gi|255561879|ref|XP_002521948.1| phosphoribosylaminoimidazole carboxylase atpase-subunit, putative [Ricinus communis] gi|223538752|gb|EEF40352.1| phosphoribosylaminoimidazole carboxylase atpase-subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/435 (82%), Positives = 403/435 (92%), Gaps = 2/435 (0%)

Query: 1   MEVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVE 60
           M+++DLE A RAG  +GYPLM+KS+RLAYDGRGNAVAK+EE+LSSA+TALGGF+RGLYVE
Sbjct: 197 MQIDDLEGAKRAGDLYGYPLMIKSRRLAYDGRGNAVAKTEEDLSSAVTALGGFERGLYVE 256

Query: 61  KWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKA 120
           KWAPF+KELAVIV RGRD SILCYPVVETIH+ENICHIVKAPA VPWKI +LATDVAHKA
Sbjct: 257 KWAPFIKELAVIVARGRDNSILCYPVVETIHRENICHIVKAPANVPWKIKKLATDVAHKA 316

Query: 121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLG 180
           VS LEGAG+FAVELF T++G ILLNEVAPRPHNSGHHTIESCYTSQFEQH+RAVVGLPLG
Sbjct: 317 VSLLEGAGVFAVELFLTSDGLILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVVGLPLG 376

Query: 181 DPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHIT 240
           DPSMKTPAAIMYNLLGE EGE GF+LAHQLIGKAL+IPGA+VHWYDKPEMR+QRKMGHIT
Sbjct: 377 DPSMKTPAAIMYNLLGEDEGEPGFHLAHQLIGKALNIPGASVHWYDKPEMRKQRKMGHIT 436

Query: 241 IVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPH 300
           IVG+S+G+VE++LNS+LKE+  D Q   V PR+GIIMGSDSDLPVMK+AA+IL MF VP+
Sbjct: 437 IVGASLGIVEAKLNSMLKEE-CDSQ-SAVAPRVGIIMGSDSDLPVMKEAARILNMFGVPN 494

Query: 301 EVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASA 360
           EVRI+SAHRTP++MFSYASSA +RG+++IIAGAGGAAHLPGMVA+ TPLPVIGVPVR S+
Sbjct: 495 EVRIISAHRTPEMMFSYASSARDRGVQLIIAGAGGAAHLPGMVASLTPLPVIGVPVRVSS 554

Query: 361 LDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDV 420
           LDG+DSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLG GD DL ARM QY ED RD+V
Sbjct: 555 LDGMDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGIGDPDLWARMTQYKEDTRDEV 614

Query: 421 LTKAEKLQKDGWESY 435
           L KA++LQ+DGWESY
Sbjct: 615 LKKADRLQRDGWESY 629

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359487998|ref|XP_002263206.2| PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087911|emb|CBI35194.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859592|emb|CAN83526.1| hypothetical protein VITISV_024806 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224123484|ref|XP_002319089.1| predicted protein [Populus trichocarpa] gi|222857465|gb|EEE95012.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224116032|ref|XP_002332031.1| predicted protein [Populus trichocarpa] gi|222875256|gb|EEF12387.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42569706|ref|NP_181305.2| phosphoribosylaminoimidazole carboxylase [Arabidopsis thaliana] gi|28973715|gb|AAO64174.1| putative phosphoribosylaminoimidazole carboxylase [Arabidopsis thaliana] gi|30793959|gb|AAP40431.1| putative phosphoribosylaminoimidazole carboxylase [Arabidopsis thaliana] gi|110737176|dbj|BAF00537.1| phosphoribosylaminoimidazole carboxylase like protein [Arabidopsis thaliana] gi|330254341|gb|AEC09435.1| phosphoribosylaminoimidazole carboxylase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|37983592|gb|AAR06291.1| phosphoribosylaminoimidazole carboxylase, partial [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|13173434|gb|AAK14408.1| phosphoribosylaminoimidazole carboxylase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|3236251|gb|AAC23639.1| putative phosphoribosylaminoimidazole carboxylase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query438
TAIR|locus:2040771642 AT2G37690 [Arabidopsis thalian 0.990 0.676 0.693 1.2e-163
POMBASE|SPCC1322.13552 ade6 "phosphoribosylaminoimida 0.958 0.760 0.495 4.2e-102
CGD|CAL0003241568 ADE2 [Candida albicans (taxid: 0.981 0.757 0.471 5.9e-96
UNIPROTKB|Q92210568 ADE2 "Phosphoribosylaminoimida 0.981 0.757 0.471 5.9e-96
SGD|S000005654571 ADE2 "Phosphoribosylaminoimida 0.970 0.744 0.454 1.3e-93
ASPGD|ASPL0000012782564 AN3626 [Emericella nidulans (t 0.956 0.742 0.394 1.5e-74
TAIR|locus:2051314162 AT2G05140 "AT2G05140" [Arabido 0.367 0.993 0.583 2.4e-44
TIGR_CMR|BA_0289383 BA_0289 "phosphoribosylaminoim 0.552 0.631 0.372 4.2e-40
UNIPROTKB|P96880174 purE "N5-carboxyaminoimidazole 0.363 0.913 0.509 6.5e-35
UNIPROTKB|P65898429 purK "N5-carboxyaminoimidazole 0.515 0.526 0.379 9.5e-34
TAIR|locus:2040771 AT2G37690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1593 (565.8 bits), Expect = 1.2e-163, P = 1.2e-163
 Identities = 303/437 (69%), Positives = 351/437 (80%)

Query:     1 MEVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVE 60
             ME++D+E A +AG+ FGYPLM+KSKRLAYDGRGNAVA +++ELSSA+TALGGF RGLY+E
Sbjct:   208 MEISDIEGARKAGELFGYPLMIKSKRLAYDGRGNAVANNQDELSSAVTALGGFSRGLYIE 267

Query:    61 KWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKA 120
             KWAPFVKELAVIV RGRD S++CYPVVETIH++NICHIVKAPA VPWKI++LATDVA KA
Sbjct:   268 KWAPFVKELAVIVARGRDGSMVCYPVVETIHRDNICHIVKAPADVPWKINKLATDVAQKA 327

Query:   121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLG 180
             V SLEGAG+FAVELF T + QILLNEVAPRPHNSGH TIE CYTSQFEQH+RAVVGLPLG
Sbjct:   328 VGSLEGAGVFAVELFLTEDSQILLNEVAPRPHNSGHQTIECCYTSQFEQHLRAVVGLPLG 387

Query:   181 DPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHIT 240
             DPSM+TPA+IMYN+LGE +GE GF LAH+LI +AL IPGA+VHWYDKPEMR+QRKMGHIT
Sbjct:   388 DPSMRTPASIMYNILGEDDGEAGFKLAHRLIARALCIPGASVHWYDKPEMRKQRKMGHIT 447

Query:   241 IVGSSMGLVESRLNSLLKEDSSDCQFKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPH 300
             +VG SMG++E RL  +L E S     +T  PR+ IIMGSD+DLPVMKDAAKIL +F V H
Sbjct:   448 LVGQSMGILEQRLQCILSEQSHQVH-ET--PRVAIIMGSDTDLPVMKDAAKILDLFGVTH 504

Query:   301 EVRIVSAHRTPDLMFSYASSAHERXXXXXXXXXXXXXHLPGMVAARTPLPVIGVPVRXXX 360
             EV+IVSAHRTP++M++YA+SAH R             HLPGMVA+ TPLPVIGVPVR   
Sbjct:   505 EVKIVSAHRTPEMMYTYATSAHSRGVQVIIAGAGGAAHLPGMVASLTPLPVIGVPVRATR 564

Query:   361 XXXXXXXXXIVQMPRGVPXXXXXXXXXXXXGLLAVRMLGFGDADLRARMQQYMEDMRDDV 420
                      IVQMPRGVP             LLAVRMLG  D DL +RM+QY EDMRD+ 
Sbjct:   565 LDGVDSLLSIVQMPRGVPVATVAINNATNAALLAVRMLGISDTDLVSRMRQYQEDMRDEN 624

Query:   421 LTKAEKLQKDGWESYLN 437
             L K EKL+ +GWESYLN
Sbjct:   625 LNKGEKLETEGWESYLN 641
GO:0004638 "phosphoribosylaminoimidazole carboxylase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA;ISS
GO:0016874 "ligase activity" evidence=IEA
GO:0034023 "5-(carboxyamino)imidazole ribonucleotide mutase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009555 "pollen development" evidence=IMP
GO:0009570 "chloroplast stroma" evidence=IDA
POMBASE|SPCC1322.13 ade6 "phosphoribosylaminoimidazole carboxylase Ade6" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0003241 ADE2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q92210 ADE2 "Phosphoribosylaminoimidazole carboxylase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000005654 ADE2 "Phosphoribosylaminoimidazole carboxylase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ASPGD|ASPL0000012782 AN3626 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2051314 AT2G05140 "AT2G05140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0289 BA_0289 "phosphoribosylaminoimidazole carboxylase, ATPase subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P96880 purE "N5-carboxyaminoimidazole ribonucleotide mutase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|P65898 purK "N5-carboxyaminoimidazole ribonucleotide synthase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0CQ36PUR6_CRYNJ4, ., 1, ., 1, ., 2, 10.50110.98400.7405yesno
O74197PUR6_CANGA4, ., 1, ., 1, ., 2, 10.52460.97480.7491yesno
P55195PUR6_VIGAC4, ., 1, ., 1, ., 2, 10.71460.99310.7809N/Ano
P15567PUR6_SCHPO4, ., 1, ., 1, ., 2, 10.55960.95890.7608yesno
P21264PUR6_YEAST4, ., 1, ., 1, ., 2, 10.52240.96570.7408yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.1.1.210.914
3rd Layer4.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
PLN02948577 PLN02948, PLN02948, phosphoribosylaminoimidazole c 0.0
PRK06019372 PRK06019, PRK06019, phosphoribosylaminoimidazole c 8e-95
TIGR01161352 TIGR01161, purK, phosphoribosylaminoimidazole carb 3e-93
COG0041162 COG0041, PurE, Phosphoribosylcarboxyaminoimidazole 2e-91
COG0026375 COG0026, PurK, Phosphoribosylaminoimidazole carbox 2e-91
pfam00731150 pfam00731, AIRC, AIR carboxylase 6e-90
TIGR01162156 TIGR01162, purE, phosphoribosylaminoimidazole carb 1e-84
smart01001152 smart01001, AIRC, AIR carboxylase 9e-79
pfam02222171 pfam02222, ATP-grasp, ATP-grasp domain 4e-71
PRK09288395 PRK09288, purT, phosphoribosylglycinamide formyltr 4e-27
COG0027394 COG0027, PurT, Formate-dependent phosphoribosylgly 3e-26
TIGR01142380 TIGR01142, purT, phosphoribosylglycinamide formylt 6e-26
TIGR01205315 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine l 6e-09
pfam07478201 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-t 1e-08
COG1691254 COG1691, COG1691, NCAIR mutase (PurE)-related prot 1e-08
COG1181317 COG1181, DdlA, D-alanine-D-alanine ligase and rela 4e-06
TIGR02144280 TIGR02144, LysX_arch, Lysine biosynthesis enzyme L 5e-04
PRK01966333 PRK01966, ddl, D-alanyl-alanine synthetase A; Revi 5e-04
PRK08591451 PRK08591, PRK08591, acetyl-CoA carboxylase biotin 6e-04
TIGR00768277 TIGR00768, rimK_fam, alpha-L-glutamate ligases, Ri 0.001
PRK14568343 PRK14568, vanB, D-alanine--D-lactate ligase; Provi 0.002
pfam02786211 pfam02786, CPSase_L_D2, Carbamoyl-phosphate syntha 0.002
>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase Back     alignment and domain information 
 Score =  838 bits (2167), Expect = 0.0
 Identities = 331/438 (75%), Positives = 377/438 (86%), Gaps = 1/438 (0%)

Query: 1   MEVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVE 60
           ME++DLESA +AG  FGYPLM+KS+RLAYDGRGNAVAK+EE+LSSA+ ALGGF+RGLY E
Sbjct: 140 MEIDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAE 199

Query: 61  KWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKA 120
           KWAPFVKELAV+V R RD S  CYPVVETIHK+NICH+V+APA VPWK+++LATDVA KA
Sbjct: 200 KWAPFVKELAVMVARSRDGSTRCYPVVETIHKDNICHVVEAPANVPWKVAKLATDVAEKA 259

Query: 121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLG 180
           V SLEGAG+F VELF   +GQILLNEVAPRPHNSGH+TIE+CYTSQFEQH+RAV+GLPLG
Sbjct: 260 VGSLEGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYTIEACYTSQFEQHLRAVLGLPLG 319

Query: 181 DPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHIT 240
           D SMK PAAIMYN+LGE EGE GF LAHQL+G+AL+IPGA+VHWY KPEMR+QRKMGHIT
Sbjct: 320 DTSMKVPAAIMYNILGEDEGEAGFRLAHQLMGRALNIPGASVHWYGKPEMRKQRKMGHIT 379

Query: 241 IVGSSMGLVESRLNSLLKEDSSDCQFKTVL-PRIGIIMGSDSDLPVMKDAAKILTMFSVP 299
           +VG S   VE+RL+ LL E+S+D        P +GIIMGSDSDLP MKDAA+IL  F VP
Sbjct: 380 VVGPSAAEVEARLDQLLAEESADPDALPKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVP 439

Query: 300 HEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRAS 359
           +EV IVSAHRTP+ MFSYA SAH RG+++IIAGAGGAAHLPGMVA+ TPLPVIGVPV+ S
Sbjct: 440 YEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTS 499

Query: 360 ALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDD 419
            LDGLDSLLSIVQMPRGVPVATVAI NATNAGLLAVRMLG  D DL  +M+ Y EDMRD 
Sbjct: 500 HLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGASDPDLLDKMEAYQEDMRDM 559

Query: 420 VLTKAEKLQKDGWESYLN 437
           VL KAEKL++ GWE YLN
Sbjct: 560 VLEKAEKLEELGWEEYLN 577

Length = 577
>gnl|CDD|235674 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>gnl|CDD|233295 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>gnl|CDD|223119 COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|223105 COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|144362 pfam00731, AIRC, AIR carboxylase Back     alignment and domain information
>gnl|CDD|130230 TIGR01162, purE, phosphoribosylaminoimidazole carboxylase, PurE protein Back     alignment and domain information
>gnl|CDD|214965 smart01001, AIRC, AIR carboxylase Back     alignment and domain information
>gnl|CDD|216935 pfam02222, ATP-grasp, ATP-grasp domain Back     alignment and domain information
>gnl|CDD|236454 PRK09288, purT, phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>gnl|CDD|223106 COG0027, PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>gnl|CDD|233310 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase Back     alignment and domain information
>gnl|CDD|203643 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus Back     alignment and domain information
>gnl|CDD|224605 COG1691, COG1691, NCAIR mutase (PurE)-related proteins [General function prediction only] Back     alignment and domain information
>gnl|CDD|224102 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX Back     alignment and domain information
>gnl|CDD|234993 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>gnl|CDD|184750 PRK14568, vanB, D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>gnl|CDD|190425 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 438
PLN02948577 phosphoribosylaminoimidazole carboxylase 100.0
COG0041162 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m 100.0
TIGR01162156 purE phosphoribosylaminoimidazole carboxylase, Pur 100.0
PF00731150 AIRC: AIR carboxylase; InterPro: IPR000031 Phospho 100.0
COG0026375 PurK Phosphoribosylaminoimidazole carboxylase (NCA 100.0
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 100.0
PLN027351102 carbamoyl-phosphate synthase 100.0
PRK128151068 carB carbamoyl phosphate synthase large subunit; R 100.0
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 100.0
TIGR013691050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 100.0
PRK052941066 carB carbamoyl phosphate synthase large subunit; R 100.0
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 100.0
COG0027394 PurT Formate-dependent phosphoribosylglycinamide f 100.0
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 100.0
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 100.0
KOG03701435 consensus Multifunctional pyrimidine synthesis pro 99.98
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 99.97
PRK05586447 biotin carboxylase; Validated 99.97
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 99.97
PRK08654499 pyruvate carboxylase subunit A; Validated 99.97
PRK07178472 pyruvate carboxylase subunit A; Validated 99.97
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 99.97
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 99.97
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 99.97
PRK08463478 acetyl-CoA carboxylase subunit A; Validated 99.96
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.96
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 99.96
KOG2835373 consensus Phosphoribosylamidoimidazole-succinocarb 99.96
PLN02735 1102 carbamoyl-phosphate synthase 99.96
PRK08462445 biotin carboxylase; Validated 99.96
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 99.96
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 99.95
KOG0238670 consensus 3-Methylcrotonyl-CoA carboxylase, biotin 99.95
PRK12999 1146 pyruvate carboxylase; Reviewed 99.95
COG0439449 AccC Biotin carboxylase [Lipid metabolism] 99.95
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 99.95
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 99.95
COG4770645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 99.95
PRK06395435 phosphoribosylamine--glycine ligase; Provisional 99.94
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 99.94
PLN02257434 phosphoribosylamine--glycine ligase 99.94
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 99.94
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 99.93
PRK07206416 hypothetical protein; Provisional 99.93
PRK02186 887 argininosuccinate lyase; Provisional 99.93
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 99.93
COG0458400 CarB Carbamoylphosphate synthase large subunit (sp 99.93
COG0151428 PurD Phosphoribosylamine-glycine ligase [Nucleotid 99.93
PRK06524493 biotin carboxylase-like protein; Validated 99.9
COG1691254 NCAIR mutase (PurE)-related proteins [General func 99.9
KOG0369 1176 consensus Pyruvate carboxylase [Energy production 99.89
PRK05784486 phosphoribosylamine--glycine ligase; Provisional 99.89
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 99.88
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 99.87
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 99.86
PRK14570364 D-alanyl-alanine synthetase A; Provisional 99.86
PRK14572347 D-alanyl-alanine synthetase A; Provisional 99.86
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 99.85
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 99.85
KOG0370 1435 consensus Multifunctional pyrimidine synthesis pro 99.85
KOG0368 2196 consensus Acetyl-CoA carboxylase [Lipid transport 99.84
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 99.84
PRK14569296 D-alanyl-alanine synthetase A; Provisional 99.84
PRK14571299 D-alanyl-alanine synthetase A; Provisional 99.83
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 99.83
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 99.82
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 99.82
KOG0237 788 consensus Glycinamide ribonucleotide synthetase (G 99.76
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 99.76
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 99.7
PRK06849389 hypothetical protein; Provisional 99.69
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 99.69
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 99.68
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 99.68
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 99.68
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 99.67
PRK10446300 ribosomal protein S6 modification protein; Provisi 99.63
COG2232389 Predicted ATP-dependent carboligase related to bio 99.61
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 99.54
PRK14016727 cyanophycin synthetase; Provisional 99.32
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 99.31
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 99.28
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 99.23
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 99.18
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 99.14
COG3919415 Predicted ATP-grasp enzyme [General function predi 99.1
COG1821307 Predicted ATP-utilizing enzyme (ATP-grasp superfam 99.1
PLN02941328 inositol-tetrakisphosphate 1-kinase 99.07
PRK05234142 mgsA methylglyoxal synthase; Validated 98.96
PRK12458338 glutathione synthetase; Provisional 98.95
cd00532112 MGS-like MGS-like domain. This domain composes the 98.87
cd01422115 MGS Methylglyoxal synthase catalyzes the enolizati 98.84
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 98.83
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 98.83
cd01424110 MGS_CPS_II Methylglyoxal synthase-like domain from 98.75
cd01423116 MGS_CPS_I_III Methylglyoxal synthase-like domain f 98.64
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 98.63
PRK05246316 glutathione synthetase; Provisional 98.62
TIGR01016386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 98.54
COG1759361 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu 98.45
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 98.39
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 98.34
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 98.29
smart0085190 MGS MGS-like domain. This domain composes the whol 98.01
PF0214295 MGS: MGS-like domain This is a subfamily of this f 97.96
PF05770307 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- 97.82
PF02750203 Synapsin_C: Synapsin, ATP binding domain; InterPro 97.65
PF03133292 TTL: Tubulin-tyrosine ligase family; InterPro: IPR 97.54
PRK14046392 malate--CoA ligase subunit beta; Provisional 97.39
PF13549222 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. 97.33
PF06973188 DUF1297: Domain of unknown function (DUF1297); Int 97.3
PLN02235423 ATP citrate (pro-S)-lyase 97.17
PF08442202 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 96.87
PLN00124422 succinyl-CoA ligase [GDP-forming] subunit beta; Pr 96.83
COG0045387 SucC Succinyl-CoA synthetase, beta subunit [Energy 96.75
PF14243130 DUF4343: Domain of unknown function (DUF4343) 96.67
PF14305239 ATPgrasp_TupA: TupA-like ATPgrasp 96.53
PF11379355 DUF3182: Protein of unknown function (DUF3182); In 96.35
cd08550 349 GlyDH-like Glycerol_dehydrogenase-like. Families o 95.53
cd08170 351 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox 95.45
PRK09423 366 gldA glycerol dehydrogenase; Provisional 94.5
cd08551 370 Fe-ADH iron-containing alcohol dehydrogenases (Fe- 94.2
cd08171 345 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol 94.02
PRK00843 350 egsA NAD(P)-dependent glycerol-1-phosphate dehydro 93.8
cd08195 345 DHQS Dehydroquinate synthase (DHQS) catalyzes the 93.74
KOG3895488 consensus Synaptic vesicle protein Synapsin [Signa 93.74
cd08549 332 G1PDH_related Glycerol-1-phosphate_dehydrogenase a 93.73
PF13685250 Fe-ADH_2: Iron-containing alcohol dehydrogenase; P 93.64
cd08175 348 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) c 93.55
cd08173 339 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro 93.51
cd01421187 IMPCH Inosine monophosphate cyclohydrolase domain. 93.22
cd08197 355 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) cataly 92.95
COG3199 355 Predicted inorganic polyphosphate/ATP-NAD kinase [ 92.78
TIGR01357 344 aroB 3-dehydroquinate synthase. This model represe 92.7
cd08183 374 Fe-ADH2 Iron-containing alcohol dehydrogenases-lik 92.67
cd08177 337 MAR Maleylacetate reductase is involved in many ar 92.54
cd08194 375 Fe-ADH6 Iron-containing alcohol dehydrogenases-lik 92.5
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 92.34
cd08193 376 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze 92.07
PRK00002 358 aroB 3-dehydroquinate synthase; Reviewed 92.01
cd08199 354 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi- 91.8
cd07766 332 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) 91.52
cd08182 367 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c 91.15
cd08192 370 Fe-ADH7 Iron-containing alcohol dehydrogenases-lik 91.13
cd08185 380 Fe-ADH1 Iron-containing alcohol dehydrogenases-lik 91.02
PF14403445 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 90.78
PF00465 366 Fe-ADH: Iron-containing alcohol dehydrogenase ; In 90.62
cd08187 382 BDH Butanol dehydrogenase catalyzes the conversion 90.47
cd08178 398 AAD_C C-terminal alcohol dehydrogenase domain of t 90.33
cd08189 374 Fe-ADH5 Iron-containing alcohol dehydrogenases-lik 90.08
PLN02834 433 3-dehydroquinate synthase 89.77
cd08176 377 LPO Lactadehyde:propanediol oxidoreductase (LPO) c 89.73
KOG2157497 consensus Predicted tubulin-tyrosine ligase [Postt 89.31
cd08186 383 Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ 89.12
KOG2156662 consensus Tubulin-tyrosine ligase-related protein 89.04
cd08191 386 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz 88.94
cd08172 347 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol 88.53
cd08179 375 NADPH_BDH NADPH-dependent butanol dehydrogenase in 88.05
PRK10586 362 putative oxidoreductase; Provisional 87.97
cd08181 357 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 87.94
COG0371 360 GldA Glycerol dehydrogenase and related enzymes [E 87.58
TIGR02638 379 lactal_redase lactaldehyde reductase. This clade o 87.38
PRK10624 382 L-1,2-propanediol oxidoreductase; Provisional 87.22
cd08169 344 DHQ-like Dehydroquinate synthase-like which includ 87.17
TIGR00355 511 purH phosphoribosylaminoimidazolecarboxamide formy 86.58
cd08174 331 G1PDH-like Glycerol-1-phosphate dehydrogenase-like 86.15
PRK09860 383 putative alcohol dehydrogenase; Provisional 85.71
cd08190 414 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv 85.06
PRK00881 513 purH bifunctional phosphoribosylaminoimidazolecarb 84.5
PRK14021 542 bifunctional shikimate kinase/3-dehydroquinate syn 84.44
cd08188 377 Fe-ADH4 Iron-containing alcohol dehydrogenases-lik 84.23
PRK15454 395 ethanol dehydrogenase EutG; Provisional 84.21
PRK10481224 hypothetical protein; Provisional 83.72
PLN02891 547 IMP cyclohydrolase 83.17
PRK01372 304 ddl D-alanine--D-alanine ligase; Reviewed 82.96
KOG2835373 consensus Phosphoribosylamidoimidazole-succinocarb 81.86
), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02843">PF0284393 GARS_C: Phosphoribosylglycinamide synthetase, C do 80.99
cd08180 332 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes 80.96
COG1609 333 PurR Transcriptional regulators [Transcription] 80.49
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information 
Probab=100.00  E-value=1.7e-85  Score=692.28  Aligned_cols=434  Identities=76%  Similarity=1.188  Sum_probs=393.0

Q ss_pred             ccCHHHHHHHHHhhCCcEEEEecCCCCCCcCcEEeCCHHHHHHHHHHhcCCCCcEEEeeccCCceeEEEEEEEecCCeEE
Q 013701            3 VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKWAPFVKELAVIVVRGRDKSIL   82 (438)
Q Consensus         3 v~s~ee~~~~~~~igyPvVvKP~~~g~~g~Gv~iv~~~eel~~~~~~~~~~~~~~lvEe~I~g~~E~sv~~~~~~~G~~~   82 (438)
                      +++.+++.++++++|||+||||..+||+|+|+++++|++|+.++++.+..++..++||+||++.+|+++.++++.+|++.
T Consensus       142 v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~~~EisV~v~r~~~G~i~  221 (577)
T PLN02948        142 IDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPFVKELAVMVARSRDGSTR  221 (577)
T ss_pred             eCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCCCeEEEEEEEECCCCCEE
Confidence            56889999999999999999998888789999999999999999998876556799999999889999999998889988


Q ss_pred             EEeeeeeEEecCeeeEEEcCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEEcCCCCCCCCcceeec
Q 013701           83 CYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKAVSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESC  162 (438)
Q Consensus        83 ~~~~~e~~~~~g~~~~~~~P~~l~~~~~~~i~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~  162 (438)
                      .+|..|+.+.++.+...+.|+.+++++++++++++.+++++|+++|++++|||++++|++||+|||||+|+++||+..++
T Consensus       222 ~~p~~E~~~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh~t~ea~  301 (577)
T PLN02948        222 CYPVVETIHKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYTIEAC  301 (577)
T ss_pred             EecCcccEEECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCceeeecc
Confidence            89998888888877777789999999999999999999999999999999999998899999999999999999999999


Q ss_pred             cCcHHHHHHHHHhCCCCCCCCCCCCceEEEEeccccccCCCccchhhhHHHHHcCCCcEEEecccccccCCceeEEEEEe
Q 013701          163 YTSQFEQHMRAVVGLPLGDPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHITIV  242 (438)
Q Consensus       163 ~~~~~~~~l~~~~G~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~i~~~~~~pg~~~~~~~~~~~~~g~~iG~Vi~~  242 (438)
                      ++|+|++|+|+++|+|++.+......++|+++++...+...+.....+++.+...|+|++++|++++.+.+|++|||+++
T Consensus       302 ~~s~fe~~vRa~lGlpl~~~~~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~~~~p~~~v~~ygk~~~r~~rkmGhV~~~  381 (577)
T PLN02948        302 YTSQFEQHLRAVLGLPLGDTSMKVPAAIMYNILGEDEGEAGFRLAHQLMGRALNIPGASVHWYGKPEMRKQRKMGHITVV  381 (577)
T ss_pred             cCCHHHHHHHHHcCCCCCCccccCCcEEEEEEeccccccccccchhhHHHHHhhCCCCEEEEecCCCCCCCCeeEEEEEe
Confidence            99999999999999999987665444789999986532111110011555666789999999999888899999999999


Q ss_pred             cCCHHHHHHHHHHHhhhccCccc-cCCCCCeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHH
Q 013701          243 GSSMGLVESRLNSLLKEDSSDCQ-FKTVLPRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSA  321 (438)
Q Consensus       243 G~~~~ea~~ka~~~~~~i~~~~~-~~~~~~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~  321 (438)
                      |+|.++++.+++.+++.+...+. .++..++|+|+|||+||+++++++++.|+++|++++++|+||||+|+++.+|++++
T Consensus       382 g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~  461 (577)
T PLN02948        382 GPSAAEVEARLDQLLAEESADPDALPKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSA  461 (577)
T ss_pred             cCCHHHHHHHHHHHHhhhccCCCCCCCCCCeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHH
Confidence            99999999999999886654321 22345789999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCeEEEEEcCCCCCchhhhhcCCCCCEEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCC
Q 013701          322 HERGIEIIIAGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFG  401 (438)
Q Consensus       322 ~~~g~~v~i~~ag~~~~l~~~i~~~~~~pVI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~  401 (438)
                      +++|++|||++|||++||||+++++|++||||||++++.++|+|+||||+|||+|+||+||+|||+.|||++|+|||+++
T Consensus       462 ~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~  541 (577)
T PLN02948        462 HSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGAS  541 (577)
T ss_pred             HHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 013701          402 DADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYL  436 (438)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
                      |++||+||++||+++.++|++++++|++.+|+.|+
T Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (577)
T PLN02948        542 DPDLLDKMEAYQEDMRDMVLEKAEKLEELGWEEYL  576 (577)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhc
Confidence            99999999999999999999999999887888885

>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein Back     alignment and domain information
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE Back     alignment and domain information
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only] Back     alignment and domain information
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>COG3919 Predicted ATP-grasp enzyme [General function prediction only] Back     alignment and domain information
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>PRK05234 mgsA methylglyoxal synthase; Validated Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>cd00532 MGS-like MGS-like domain Back     alignment and domain information
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP) Back     alignment and domain information
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>smart00851 MGS MGS-like domain Back     alignment and domain information
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine Back     alignment and domain information
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase Back     alignment and domain information
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) Back     alignment and domain information
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A Back     alignment and domain information
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH [] Back     alignment and domain information
>PLN02235 ATP citrate (pro-S)-lyase Back     alignment and domain information
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PF14243 DUF4343: Domain of unknown function (DUF4343) Back     alignment and domain information
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp Back     alignment and domain information
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria Back     alignment and domain information
>cd08550 GlyDH-like Glycerol_dehydrogenase-like Back     alignment and domain information
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation Back     alignment and domain information
>PRK09423 gldA glycerol dehydrogenase; Provisional Back     alignment and domain information
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like Back     alignment and domain information
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like Back     alignment and domain information
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis Back     alignment and domain information
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins Back     alignment and domain information
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C Back     alignment and domain information
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner Back     alignment and domain information
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme Back     alignment and domain information
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain Back     alignment and domain information
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics Back     alignment and domain information
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only] Back     alignment and domain information
>TIGR01357 aroB 3-dehydroquinate synthase Back     alignment and domain information
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes Back     alignment and domain information
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor Back     alignment and domain information
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed Back     alignment and domain information
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS) Back     alignment and domain information
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH) Back     alignment and domain information
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) Back     alignment and domain information
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway Back     alignment and domain information
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 Back     alignment and domain information
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1 Back     alignment and domain information
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process Back     alignment and domain information
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD) Back     alignment and domain information
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>PLN02834 3-dehydroquinate synthase Back     alignment and domain information
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria Back     alignment and domain information
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase Back     alignment and domain information
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate Back     alignment and domain information
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like Back     alignment and domain information
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria Back     alignment and domain information
>PRK10586 putative oxidoreductase; Provisional Back     alignment and domain information
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD) Back     alignment and domain information
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion] Back     alignment and domain information
>TIGR02638 lactal_redase lactaldehyde reductase Back     alignment and domain information
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional Back     alignment and domain information
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase Back     alignment and domain information
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Back     alignment and domain information
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like Back     alignment and domain information
>PRK09860 putative alcohol dehydrogenase; Provisional Back     alignment and domain information
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism Back     alignment and domain information
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional Back     alignment and domain information
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Back     alignment and domain information
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>PRK15454 ethanol dehydrogenase EutG; Provisional Back     alignment and domain information
>PRK10481 hypothetical protein; Provisional Back     alignment and domain information
>PLN02891 IMP cyclohydrolase Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism Back     alignment and domain information
>COG1609 PurR Transcriptional regulators [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
3ax6_A380 Crystal Structure Of N5-Carboxyaminoimidazole Ribon 7e-57
3k5i_A403 Crystal Structure Of N5-Carboxyaminoimidazole Synth 4e-54
3k5h_A403 Crystal Structure Of Carboxyaminoimidazole Ribonucl 5e-54
4dlk_A380 Crystal Structure Of Atp-ca++ Complex Of Purk: N5- 4e-43
3q2o_A389 Crystal Structure Of Purk: N5-Carboxyaminoimidazole 5e-43
3v4s_A387 Crystal Structure Of Adp-atp Complex Of Purk: N5-ca 5e-43
3aw8_A369 Crystal Structure Of N5-Carboxyaminoimidazole Ribon 3e-41
1o4v_A183 Crystal Structure Of The Catalytic Subunit Of A Pho 2e-38
4e4t_A419 Crystal Structure Of Phosphoribosylaminoimidazole C 5e-35
4izo_A419 Crystal Structure Of Kinase Phosphoribosylaminoimid 3e-34
3lp6_A174 Crystal Structure Of Rv3275c-E60a From Mycobacteriu 6e-33
2z04_B365 Crystal Structure Of Phosphoribosylaminoimidazole C 1e-31
3orq_A377 Crystal Structure Of N5-Carboxyaminoimidazole Synth 2e-30
1xmp_A170 Crystal Structure Of Pure (Ba0288) From Bacillus An 2e-25
4b4k_A181 Crystal Structure Of Bacillus Anthracis Pure Length 3e-25
3ors_A163 Crystal Structure Of N5-Carboxyaminoimidazole Ribon 2e-24
1b6r_A355 N5-Carboxyaminoimidazole Ribonucleotide Synthetase 1e-23
1b6s_A355 Structure Of N5-Carboxyaminoimidazole Ribonucleotid 1e-23
4grd_A173 Crystal Structure Of Phosphoribosylaminoimidazole C 2e-22
2nsl_A169 E. Coli Pure H45n Mutant Complexed With Cair Length 5e-22
2nsh_A169 E. Coli Pure H45q Mutant Complexed With Nitro-Air L 5e-22
2fw1_A183 Structure Of Pure (n5-carboxyaminoimidazole Ribonuc 1e-20
1u11_A182 Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutas 1e-20
2fwa_A183 Structure Of Pure (n5-carboxyaminoimidazole Ribonuc 5e-20
2fw6_A183 Structure Of Pure (N5-Carboxyaminoimidazole Ribonuc 5e-20
2ate_A169 Structure Of The Complex Of Pure With Nitroair Leng 5e-20
1d7a_A161 Crystal Structure Of E. Coli Pure-Mononucleotide Co 6e-20
1qcz_A169 Crystal Structure Of E. Coli Pure, An Unusual Mutas 6e-20
2fwi_A183 Structure Of Pure (n5-carboxyaminoimidazole Ribonuc 1e-19
2fwb_A183 Structure Of Pure (N5-Carboxyaminoimidazole Ribonuc 1e-19
2fw9_A183 Structure Of Pure (n5-carboxyaminoimidazole Ribonuc 1e-19
2fw8_A183 Structure Of Pure (N5-Carboxyaminoimidazole Ribonuc 2e-19
3oow_A166 Octameric Structure Of The Phosphoribosylaminoimida 8e-19
3opq_A163 Phosphoribosylaminoimidazole Carboxylase With Fruct 9e-19
3kuu_A174 Structure Of The Pure Phosphoribosylaminoimidazole 3e-18
2ywx_A157 Crystal Structure Of Phosphoribosylaminoimidazole C 6e-17
1eyz_A392 Structure Of Escherichia Coli Purt-Encoded Glycinam 2e-16
1kj8_A391 Crystal Structure Of Purt-Encoded Glycinamide Ribon 2e-16
2czg_A433 Crystal Structure Of Probable Phosphoribosylglycina 4e-15
3trh_A169 Structure Of A Phosphoribosylaminoimidazole Carboxy 2e-08
>pdb|3AX6|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermotoga Maritima Length = 380 Back     alignment and structure 
Iteration: 1

 Score =  218 bits (554), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 120/273 (43%), Positives = 165/273 (60%), Gaps = 24/273 (8%)
Query: 3   VNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVEKW 62
           V DLES  R   +FG+P++ K+++  YDGRG  + K+E++L +AI          Y+E++
Sbjct: 121 VKDLESDVR---EFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIKG------ETYLEEF 171
Query: 63  APFVKELAVIVVRGRDKSILCYPVVETIHKE--NICHIVKAPAAVPWKISELATDVAHKA 120
               KELAV V R     I CYPVVE    E  NIC  V APA +  K S++A ++A   
Sbjct: 172 VEIEKELAVXVARNEKGEIACYPVVEXYFDEDANICDTVIAPARIEEKYSKIAREIATSV 231
Query: 121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLG 180
           V +LEG GIF +E F T  G+IL+NE+APRPHNSGH+TIE+C TSQFEQH+RA+  LPLG
Sbjct: 232 VEALEGVGIFGIEXFLTKQGEILVNEIAPRPHNSGHYTIEACVTSQFEQHIRAIXNLPLG 291
Query: 181 DPSMKTPAAIMYNLLGEAEGERGFYLAHQLIG--KALSIPGATVHWYDKPEMRQQRKMGH 238
              +  P A+  NLL    GE G+Y    LIG  +AL+I G ++H+Y K E R  RK GH
Sbjct: 292 STELLIP-AVXVNLL----GEEGYYGKPALIGLEEALAIEGLSLHFYGKKETRPYRKXGH 346
Query: 239 ITIVGSSM------GLVESRLNSLLKEDSSDCQ 265
            T+V   +       L   ++  ++ E+ + CQ
Sbjct: 347 FTVVDRDVERALEKALRAKKILKVVSEEGAXCQ 379
>pdb|3K5I|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthase From Aspergillus Clavatus In Complex With Adp And 5- Aminoimadazole Ribonucleotide Length = 403 Back     alignment and structure
>pdb|3K5H|A Chain A, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide Synthase From Asperigillus Clavatus Complexed With Atp Length = 403 Back     alignment and structure
>pdb|4DLK|A Chain A, Crystal Structure Of Atp-ca++ Complex Of Purk: N5- Carboxyaminoimidazole Ribonucleotide Synthetase Length = 380 Back     alignment and structure
>pdb|3Q2O|A Chain A, Crystal Structure Of Purk: N5-Carboxyaminoimidazole Ribonucleotide Synthetase Length = 389 Back     alignment and structure
>pdb|3V4S|A Chain A, Crystal Structure Of Adp-atp Complex Of Purk: N5-carboxyaminoimidazole Ribonucleotide Synthetase Length = 387 Back     alignment and structure
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermus Thermophilus Hb8 Length = 369 Back     alignment and structure
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A Phosphoribosylaminoimidazole Mutase (Tm0446) From Thermotoga Maritima At 1.77 A Resolution Length = 183 Back     alignment and structure
>pdb|4E4T|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Carboxylase, Atpase Subunit From Burkholderia Ambifaria Length = 419 Back     alignment and structure
>pdb|4IZO|A Chain A, Crystal Structure Of Kinase Phosphoribosylaminoimidazole Carboxylase, Atpase Subunit From Burkholderia Thailandensis Length = 419 Back     alignment and structure
>pdb|3LP6|A Chain A, Crystal Structure Of Rv3275c-E60a From Mycobacterium Tubercu 1.7a Resolution Length = 174 Back     alignment and structure
>pdb|2Z04|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit From Aquifex Aeolicus Length = 365 Back     alignment and structure
>pdb|3ORQ|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase From Staphylococcus Aureus Complexed With Adp Length = 377 Back     alignment and structure
>pdb|1XMP|A Chain A, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis At 1.8 Resolution Length = 170 Back     alignment and structure
>pdb|4B4K|A Chain A, Crystal Structure Of Bacillus Anthracis Pure Length = 181 Back     alignment and structure
>pdb|3ORS|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Ribonucleotide Mutase From Staphylococcus Aureus Length = 163 Back     alignment and structure
>pdb|1B6R|A Chain A, N5-Carboxyaminoimidazole Ribonucleotide Synthetase From E. Coli Length = 355 Back     alignment and structure
>pdb|1B6S|A Chain A, Structure Of N5-Carboxyaminoimidazole Ribonucleotide Synthetase Length = 355 Back     alignment and structure
>pdb|4GRD|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit From Burkholderia Cenocepacia J2315 Length = 173 Back     alignment and structure
>pdb|2NSL|A Chain A, E. Coli Pure H45n Mutant Complexed With Cair Length = 169 Back     alignment and structure
>pdb|2NSH|A Chain A, E. Coli Pure H45q Mutant Complexed With Nitro-Air Length = 169 Back     alignment and structure
>pdb|2FW1|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide Mutase) From The Acidophilic Bacterium Acetobacter Aceti, At Ph 8.5 Length = 183 Back     alignment and structure
>pdb|1U11|A Chain A, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From The Acidophile Acetobacter Aceti Length = 182 Back     alignment and structure
>pdb|2FWA|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide Mutase) H89n From The Acidophilic Bacterium Acetobacter Aceti, At Ph 7 Length = 183 Back     alignment and structure
>pdb|2FW6|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) Mutant H59n From The Acidophilic Bacterium Acetobacter Aceti, At Ph 5.4 Length = 183 Back     alignment and structure
>pdb|2ATE|A Chain A, Structure Of The Complex Of Pure With Nitroair Length = 169 Back     alignment and structure
>pdb|1D7A|A Chain A, Crystal Structure Of E. Coli Pure-Mononucleotide Complex. Length = 161 Back     alignment and structure
>pdb|1QCZ|A Chain A, Crystal Structure Of E. Coli Pure, An Unusual Mutase That Catalyzes The Conversion Of N5-carboxyaminoimidazole Ribonucleotide (n5-cair) To 4-carboxyaminoimidazole Ribonucleotide (cair) In The Purine Biosynthetic Pathway Length = 169 Back     alignment and structure
>pdb|2FWI|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide Mutase) H59d, From The Acidophilic Bacterium Acetobacter Aceti, Complexed With 5-aminoimidazole Ribonucleotide (air) Length = 183 Back     alignment and structure
>pdb|2FWB|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) H89f From The Acidophilic Bacterium Acetobacter Aceti, At Ph 8 Length = 183 Back     alignment and structure
>pdb|2FW9|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide Mutase) H59f From The Acidophilic Bacterium Acetobacter Aceti, At Ph 8 Length = 183 Back     alignment and structure
>pdb|2FW8|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) H89g From The Acidophilic Bacterium Acetobacter Aceti, At Ph 8 Length = 183 Back     alignment and structure
>pdb|3OOW|A Chain A, Octameric Structure Of The Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit From Francisella Tularensis Subsp. Tularensis Schu S4. Length = 166 Back     alignment and structure
>pdb|3OPQ|A Chain A, Phosphoribosylaminoimidazole Carboxylase With Fructose-6-Phosphate Bound To The Central Channel Of The Octameric Protein Structure. Length = 163 Back     alignment and structure
>pdb|3KUU|A Chain A, Structure Of The Pure Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit From Yersinia Pestis Length = 174 Back     alignment and structure
>pdb|2YWX|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit From Methanocaldococcus Jannaschii Length = 157 Back     alignment and structure
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide Ribonucleotide Transformylase Complexed With Mg And Amppnp Length = 392 Back     alignment and structure
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide Ribonucleotide Transformylase In Complex With Mg-Atp And Gar Length = 391 Back     alignment and structure
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide Formyl Transferase (Ph0318) From Pyrococcus Horikoshii Ot3 Length = 433 Back     alignment and structure
>pdb|3TRH|A Chain A, Structure Of A Phosphoribosylaminoimidazole Carboxylase Catalytic Subunit (Pure) From Coxiella Burnetii Length = 169 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 1e-117
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 1e-117
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 1e-117
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 1e-115
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 1e-114
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 1e-111
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 1e-110
1o4v_A183 Phosphoribosylaminoimidazole mutase PURE; structur 1e-110
3lp6_A174 Phosphoribosylaminoimidazole carboxylase catalyti; 1e-107
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 1e-104
1xmp_A170 PURE, phosphoribosylaminoimidazole carboxylase; pu 1e-96
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 2e-96
3ors_A163 N5-carboxyaminoimidazole ribonucleotide mutase; is 3e-96
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 1e-95
3rg8_A159 Phosphoribosylaminoimidazole carboxylase, PURE PR; 6e-94
2ywx_A157 Phosphoribosylaminoimidazole carboxylase catalyti; 9e-94
3oow_A166 Phosphoribosylaminoimidazole carboxylase,catalyic; 3e-93
3kuu_A174 Phosphoribosylaminoimidazole carboxylase catalyti 2e-92
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 2e-91
1u11_A182 PURE (N5-carboxyaminoimidazole ribonucleotide MUT; 3e-90
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 5e-90
2h31_A425 Multifunctional protein ADE2; alpha-beta-alpha, li 2e-59
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 8e-09
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 7e-08
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 1e-07
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 2e-07
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 4e-07
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 7e-07
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 2e-06
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 2e-06
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 5e-06
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 1e-05
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 2e-05
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 3e-05
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 3e-05
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 5e-05
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 9e-05
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 2e-04
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 2e-04
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 3e-04
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 4e-04
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 5e-04
3ouz_A446 Biotin carboxylase; structural genomics, center fo 6e-04
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 7e-04
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 8e-04
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Length = 389 Back     alignment and structure
 Score =  347 bits (892), Expect = e-117
 Identities = 93/256 (36%), Positives = 138/256 (53%), Gaps = 11/256 (4%)

Query: 1   MEVNDLESAWRAGKQFGYPLMVKSKRLAYDGRGNAVAKSEEELSSAITALGGFDRGLYVE 60
             V + E    A  +  YP ++K+    YDG+G  V +SE ++  A            +E
Sbjct: 131 RLVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANA--AECILE 188

Query: 61  KWAPFVKELAVIVVRGRDKSILCYPVVETIHKENICHIVKAPAAVPWKISELATDVAHKA 120
           KW PF KE++VIV+R        +PV E IH  NI H    PA +  ++S+ A   A   
Sbjct: 189 KWVPFEKEVSVIVIRSVSGETKVFPVAENIHVNNILHESIVPARITEELSQKAIAYAKVL 248

Query: 121 VSSLEGAGIFAVELFWTNNGQILLNEVAPRPHNSGHHTIESCYTSQFEQHMRAVVGLPLG 180
              LE  G  AVE+F T +G+I +NE+APRPHNSGH+T ++C TSQF QH+RA+  LPLG
Sbjct: 249 ADELELVGTLAVEMFATADGEIYINELAPRPHNSGHYTQDACETSQFGQHIRAICNLPLG 308

Query: 181 DPSMKTPAAIMYNLLGEAEGERGFYLAHQLIGKALSIPGATVHWYDKPEMRQQRKMGHIT 240
           + ++  P  +M N+LGE            ++ +   + G  +H Y K E + QRKMGH+ 
Sbjct: 309 ETNLLKP-VVMVNILGE--------HIEGVLRQVNRLTGCYLHLYGKEEAKAQRKMGHVN 359

Query: 241 IVGSSMGLVESRLNSL 256
           I+  ++ +   +  SL
Sbjct: 360 ILNDNIEVALEKAKSL 375
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Length = 377 Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Length = 419 Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Length = 403 Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Length = 380 Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Length = 369 Back     alignment and structure
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Length = 183 Back     alignment and structure
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} Length = 174 Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Length = 355 Back     alignment and structure
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Length = 170 Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Length = 181 Back     alignment and structure
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} Length = 163 Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Length = 169 Back     alignment and structure
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} PDB: 3rgg_A* Length = 159 Back     alignment and structure
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Length = 157 Back     alignment and structure
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} PDB: 3opq_A* Length = 166 Back     alignment and structure
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Length = 174 Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Length = 433 Back     alignment and structure
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Length = 182 Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Length = 391 Back     alignment and structure
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Length = 425 Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Length = 474 Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Length = 343 Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Length = 346 Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A Length = 317 Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403 Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Length = 367 Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Length = 377 Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Length = 306 Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Length = 322 Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Length = 364 Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Length = 383 Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Length = 364 Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Length = 372 Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Length = 386 Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331 Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Length = 334 Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Length = 461 Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150 Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165 Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 451 Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Length = 446 Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Length = 451 Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 108 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query438
1o4v_A183 Phosphoribosylaminoimidazole mutase PURE; structur 100.0
3lp6_A174 Phosphoribosylaminoimidazole carboxylase catalyti; 100.0
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 100.0
3ors_A163 N5-carboxyaminoimidazole ribonucleotide mutase; is 100.0
1xmp_A170 PURE, phosphoribosylaminoimidazole carboxylase; pu 100.0
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 100.0
3kuu_A174 Phosphoribosylaminoimidazole carboxylase catalyti 100.0
1u11_A182 PURE (N5-carboxyaminoimidazole ribonucleotide MUT; 100.0
3oow_A166 Phosphoribosylaminoimidazole carboxylase,catalyic; 100.0
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 100.0
2ywx_A157 Phosphoribosylaminoimidazole carboxylase catalyti; 100.0
3rg8_A159 Phosphoribosylaminoimidazole carboxylase, PURE PR; 100.0
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 100.0
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 100.0
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 100.0
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 100.0
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 100.0
2h31_A425 Multifunctional protein ADE2; alpha-beta-alpha, li 100.0
1a9x_A1073 Carbamoyl phosphate synthetase (large chain); amid 100.0
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 100.0
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 100.0
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 100.0
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 100.0
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 100.0
3ouz_A446 Biotin carboxylase; structural genomics, center fo 99.97
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 99.97
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 99.97
3jrx_A587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 99.97
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 99.96
3glk_A540 Acetyl-COA carboxylase 2; ATP binding, alternative 99.96
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 99.96
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 99.96
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 99.96
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 99.96
3u9t_A675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 99.96
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 99.95
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 99.95
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 99.95
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 99.95
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 99.95
3n6r_A681 Propionyl-COA carboxylase, alpha subunit; protein 99.95
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 99.95
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 99.95
1w96_A554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 99.95
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 99.94
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 99.94
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 99.94
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 99.94
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 99.93
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 99.89
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 99.88
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 99.88
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 99.87
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 99.87
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 99.87
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 99.87
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 99.87
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 99.86
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 99.86
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 99.86
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 99.86
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 99.86
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 99.85
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 99.85
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 99.85
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 99.82
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 99.78
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 99.77
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 99.76
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 99.75
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 99.63
1wr2_A238 Hypothetical protein PH1789; structural genomics, 99.52
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 99.49
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 99.41
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 99.41
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 99.39
2yvq_A143 Carbamoyl-phosphate synthase; conserved hypothetic 99.35
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 99.3
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 99.29
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 99.27
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 99.18
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 99.14
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 99.09
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 98.95
1b93_A152 Protein (methylglyoxal synthase); glycolytic bypas 98.95
1vmd_A178 MGS, methylglyoxal synthase; TM1185, structural ge 98.91
2xw6_A134 MGS, methylglyoxal synthase; lyase; 1.08A {Thermus 98.79
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 98.37
3t7a_A330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 98.18
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 98.02
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 96.82
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 95.95
3uhj_A 387 Probable glycerol dehydrogenase; structural genomi 94.59
2q5c_A196 NTRC family transcriptional regulator; structural 94.09
1jq5_A 370 Glycerol dehydrogenase; oxidoreductase, NAD, glyce 93.79
3bfj_A 387 1,3-propanediol oxidoreductase; opportunistic path 93.17
3ox4_A 383 Alcohol dehydrogenase 2; iron, NAD, oxidoreductase 93.08
3ce9_A 354 Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin 92.93
3okf_A 390 3-dehydroquinate synthase; structural genomics, ce 92.45
1o2d_A 371 Alcohol dehydrogenase, iron-containing; TM0920, st 92.44
1ta9_A 450 Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa 92.17
3hl0_A 353 Maleylacetate reductase; structur genomics, PSI-2, 92.08
1sg6_A 393 Pentafunctional AROM polypeptide; shikimate pathwa 91.97
3jzd_A 358 Iron-containing alcohol dehydrogenase; YP_298327.1 91.61
1vlj_A 407 NADH-dependent butanol dehydrogenase; TM0820, stru 91.24
1rrm_A 386 Lactaldehyde reductase; structural genomics, dehyd 90.17
2pju_A225 Propionate catabolism operon regulatory protein; s 88.6
3qbe_A 368 3-dehydroquinate synthase; shikimate pathway, myco 87.59
1xah_A 354 Sadhqs, 3-dehydroquinate synthase; shikimate pathw 87.07
2gru_A 368 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2 86.69
1oj7_A 408 Hypothetical oxidoreductase YQHD; structural genom 85.57
1g8m_A 593 Aicar transformylase-IMP cyclohydrolase; homodimer 84.89
1ujn_A 348 Dehydroquinate synthase; riken structu genomics/pr 83.16
4ehi_A 534 Bifunctional purine biosynthesis protein PURH; str 82.33
1v95_A130 Nuclear receptor coactivator 5; coactivator indepe 81.24
3zzm_A 523 Bifunctional purine biosynthesis protein PURH; tra 80.34
3n6x_A474 Putative glutathionylspermidine synthase; domain o 80.09
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Back     alignment and structure
Probab=100.00  E-value=3.1e-51  Score=359.66  Aligned_cols=167  Identities=66%  Similarity=1.035  Sum_probs=163.3

Q ss_pred             CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCC
Q 013701          271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLP  350 (438)
Q Consensus       271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~p  350 (438)
                      +.|+|+|||+||++++++++..|++||++|+++|+|+||+|+++.+|+++++++|++|||++|||++|||+|++++|++|
T Consensus        14 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~P   93 (183)
T 1o4v_A           14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHLP   93 (183)
T ss_dssp             CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSC
T ss_pred             CeEEEEeccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhccCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013701          351 VIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKD  430 (438)
Q Consensus       351 VI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (438)
                      |||||++++.++|+|+||||+|||+|+||+||+|||++|||++|+|||+++|++||+||++||++++++|++++++|++.
T Consensus        94 VIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~Id~~~nAa~lAaqIla~~d~~l~~kL~~~r~~~~~~v~~~~~~l~~~  173 (183)
T 1o4v_A           94 VIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLEQI  173 (183)
T ss_dssp             EEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999988889999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhhhc
Q 013701          431 GWESYLN  437 (438)
Q Consensus       431 ~~~~~~~  437 (438)
                      ||+.|++
T Consensus       174 ~~~~~~~  180 (183)
T 1o4v_A          174 GYKEYLN  180 (183)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHh
Confidence            9999974
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0 Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Back     alignment and structure
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} Back     alignment and structure
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Back     alignment and structure
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Back     alignment and structure
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Back     alignment and structure
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A* Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Back     alignment and structure
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A* Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A Back     alignment and structure
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2 Back     alignment and structure
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Back     alignment and structure
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti} Back     alignment and structure
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Back     alignment and structure
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} Back     alignment and structure
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A* Back     alignment and structure
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Back     alignment and structure
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe} Back     alignment and structure
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} Back     alignment and structure
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A* Back     alignment and structure
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha} Back     alignment and structure
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2 Back     alignment and structure
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* Back     alignment and structure
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 Back     alignment and structure
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A Back     alignment and structure
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A* Back     alignment and structure
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A* Back     alignment and structure
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2 Back     alignment and structure
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A* Back     alignment and structure
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1 Back     alignment and structure
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp} Back     alignment and structure
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1 Back     alignment and structure
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A* Back     alignment and structure
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 438
d1o4va_169 c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoi 1e-66
d1qcza_163 c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoi 2e-54
d1xmpa_155 c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoi 2e-54
d1u11a_159 c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoi 1e-52
d3etja3198 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribo 1e-21
d1kjqa3206 d.142.1.2 (A:113-318) Glycinamide ribonucleotide t 6e-20
d1ulza3214 d.142.1.2 (A:115-328) Biotin carboxylase (BC), dom 8e-15
d3etja179 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribo 6e-13
d1a9xa5275 d.142.1.2 (A:128-402) Carbamoyl phosphate syntheta 4e-11
d1kjqa174 b.84.2.1 (A:319-392) Glycinamide ribonucleotide tr 1e-08
d1a9xa6259 d.142.1.2 (A:677-935) Carbamoyl phosphate syntheta 2e-08
d2j9ga3216 d.142.1.2 (A:115-330) Biotin carboxylase (BC), dom 1e-06
d2r7ka2238 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carbo 1e-06
d2r85a2235 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carbo 8e-05
d1gsoa3224 d.142.1.2 (A:104-327) Glycinamide ribonucleotide s 3e-04
d1uc8a2192 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme Ly 0.004
d1iowa2210 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain 0.004
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Length = 169 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Thermotoga maritima [TaxId: 2336]

 Score =  208 bits (531), Expect = 1e-66
 Identities = 110/167 (65%), Positives = 136/167 (81%)

Query: 271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIII 330
           PR+GIIMGSDSDLPVMK AA+IL  F + +E+ IVSAHRTPD MF YA +A ERGIE+II
Sbjct: 1   PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 60

Query: 331 AGAGGAAHLPGMVAARTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNA 390
           AGAGGAAHLPGMVA+ T LPVIGVPV+ S L+GLDSL SIVQMP GVPVATVAINNA NA
Sbjct: 61  AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNA 120

Query: 391 GLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKDGWESYLN 437
           G+LA  +LG    ++  ++++Y E M+ +VL KA++L++ G++ YLN
Sbjct: 121 GILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLEQIGYKEYLN 167
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Length = 163 Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Length = 155 Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Length = 159 Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Length = 198 Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 214 Back     information, alignment and structure
>d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]} Length = 79 Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 275 Back     information, alignment and structure
>d1kjqa1 b.84.2.1 (A:319-392) Glycinamide ribonucleotide transformylase PurT, C-domain {Escherichia coli [TaxId: 562]} Length = 74 Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 259 Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Length = 216 Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Length = 238 Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Length = 235 Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Length = 224 Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Length = 192 Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query438
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 100.0
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 100.0
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 100.0
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 100.0
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 100.0
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 99.98
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 99.96
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 99.96
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 99.95
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 99.95
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 99.94
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.9
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.9
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 99.86
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 99.86
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 99.84
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 99.84
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 99.81
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 99.7
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 99.59
d1a9xa2138 Carbamoyl phosphate synthetase, large subunit allo 99.21
d1vmda_156 Methylglyoxal synthase, MgsA {Thermotoga maritima 98.85
d1b93a_148 Methylglyoxal synthase, MgsA {Escherichia coli [Ta 98.8
d1kjqa174 Glycinamide ribonucleotide transformylase PurT, C- 98.75
d1wo8a1126 Methylglyoxal synthase, MgsA {Thermus thermophilus 98.66
d3etja179 N5-carboxyaminoimidazole ribonucleotide synthetase 98.65
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 98.45
d2pbza2213 5-formaminoimidazole-4-carboxamide ribonucleotide 97.42
d2nu7b2238 Succinyl-CoA synthetase, beta-chain, N-terminal do 97.21
d1eucb2246 Succinyl-CoA synthetase, beta-chain, N-terminal do 96.68
d1jq5a_ 366 Glycerol dehydrogenase {Bacillus stearothermophilu 94.57
d1o2da_ 359 Alcohol dehydrogenase TM0920 {Thermotoga maritima 92.33
d1vlja_ 398 NADH-dependent butanol dehydrogenase A (TM0820) {T 90.49
d1zcza1157 IMP cyclohydrolase domain of bifunctional purine b 89.0
d1jeoa_177 Probable 3-hexulose-6-phosphate isomerase MJ1247 { 87.58
d1g8ma1197 IMP cyclohydrolase domain of bifunctional purine b 87.33
d1rrma_ 385 Lactaldehyde reductase FucO {Escherichia coli [Tax 86.04
d2bona1 295 Lipid kinase YegS {Escherichia coli [TaxId: 562]} 85.73
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 85.45
d1vkza186 Glycinamide ribonucleotide synthetase (GAR-syn), C 83.5
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.3e-50  Score=348.32  Aligned_cols=167  Identities=66%  Similarity=1.035  Sum_probs=163.8

Q ss_pred             CeEEEEEecCCCHHHHHHHHHHHHHcCCcEEEEEEecCCChhHHHHHHHHHhhcCCeEEEEEcCCCCCchhhhhcCCCCC
Q 013701          271 PRIGIIMGSDSDLPVMKDAAKILTMFSVPHEVRIVSAHRTPDLMFSYASSAHERGIEIIIAGAGGAAHLPGMVAARTPLP  350 (438)
Q Consensus       271 ~~v~iv~gs~sD~~~~~~~~~~L~~~G~~~~~~v~s~h~~~~~~~~~~~~~~~~g~~v~i~~ag~~~~l~~~i~~~~~~p  350 (438)
                      ++|+|+|||+||+++++++++.|++||++++.+|.|+||+|+++.+|+++++++|++|+|++|||++||||+++++|++|
T Consensus         1 PkV~Ii~Gs~SD~~~~~~a~~~L~~~gi~~~~~v~saHr~p~rl~~~~~~~~~~~~~viIa~AG~aa~LpgvvA~~t~~P   80 (169)
T d1o4va_           1 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHLP   80 (169)
T ss_dssp             CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSC
T ss_pred             CeEEEEECcHhhHHHHHHHHHHHHHcCCcEEEEEeeeecCHHHHHHHHHHHHhcCCeEEEEeecCCcCchHHHHHhccee
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhHHHhhcCCCCCceEEEEeCCcchHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013701          351 VIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGFGDADLRARMQQYMEDMRDDVLTKAEKLQKD  430 (438)
Q Consensus       351 VI~~p~~~~~~~g~~~l~s~~~~~~gip~~tv~i~~~~~Aa~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (438)
                      |||||++++.++|+|+|||++|||+|+||+||+|||++|||++|+|||+++|++||+||++||++++++|++++++|++.
T Consensus        81 VIgvP~~~~~~~G~daLlS~lqmp~gvpVatV~Id~~~nAA~~A~~Il~l~d~~i~~kl~~~r~~~~~~v~~~~~~l~~~  160 (169)
T d1o4va_          81 VIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLEQI  160 (169)
T ss_dssp             EEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccccccCccHHHHHHhccCCccCCceeeecCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999988889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhc
Q 013701          431 GWESYLN  437 (438)
Q Consensus       431 ~~~~~~~  437 (438)
                      |++.|++
T Consensus       161 ~~~~y~~  167 (169)
T d1o4va_         161 GYKEYLN  167 (169)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHh
Confidence            9999985
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmda_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1b93a_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kjqa1 b.84.2.1 (A:319-392) Glycinamide ribonucleotide transformylase PurT, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wo8a1 c.24.1.2 (A:1-126) Methylglyoxal synthase, MgsA {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1vkza1 b.84.2.1 (A:314-399) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure