Citrus Sinensis ID: 013757

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
MAAANAGILLTLFGLASISPILKANTHDFDEVWQKRAENARRHALEAYHPNPEEVVSSFNKHVHMMFENGSSTRRYLRGRPYTGRCAATNPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTILSQGNRFLASNSHHSKEVTKRDSSPQSVWKTWNWRSEMDLMMNGAFFVESGSDVRNVNRQDVIPAKPGKFASQMTRFSGALNCYVNKPC
cccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccEEEEccccccccccccccHHHHHHHccccEEEEEEEcEEEEEcccEEEccccEEEEcccEEEEEEcccEEEEccccEEEEcEEEEEcccccccccccccccccccccccccEEEEEccccEEEEcccccccccccEEEEEccEEEEEEcEEEEccccccccccccccccccccEEEEEEEccccccccccccccccEEEEEcEEEEcccEEEEEcccccEEEEEcEEEEccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccHHccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEEEcccEEEEEccccccccEEEEEccccccccccccEEEEEEccccEEEEEcccEEcccEEEEEccEEccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEccccEEEcccEEEccccccccccHHHccccccHHHHHHHHHccccccccccccc
MAAANAGILLTLFGLasispilkanthdFDEVWQKRAENARRHAleayhpnpeevVSSFNKHVHMMFengsstrrylrgrpytgrcaatnpidqcwrcdrnwANNRKRLADCAqgfgrgtiggkngpfyvvtnpadddlvnpkpgtlrhAVIQERPLWITFAHDMVIRLSEELLitsdktidargsnvqiynGAQITMQFVKNIIIHGLhirktkagkggmirdsvshhgfrsssdgdgismfgashiwidhvsmsgcqdglidAVMGStaitvsnshfthQDHVMLlgasdghpqdsIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAiggsqhptilsqgnrflasnshhskevtkrdsspqsvwktWNWRSEMDLMMNGAffvesgsdvrnvnrqdvipakpgkfasqMTRFSgalncyvnkpc
MAAANAGILLTLFGLASISPILKANTHDFDEVWQKRAENARRHALEAYHPNPEEVVSSFNKHVHMMFEngsstrrylRGRPYTGrcaatnpidqcwrCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTILSQGNRFLASNSHHskevtkrdsspqsvwKTWNWRSEMDLMMNGAFFVESGSDVRNVNRQDVIpakpgkfasqmtrfsgalncyvnkpc
MAAANAGILLTLFGLASISPILKANTHDFDEVWQKRAENARRHALEAYHPNPEEVVSSFNKHVHMMFENGSSTRRYLRGRPYTGRCAATNPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTILSQGNRFLASNSHHSKEVTKRDSSPQSVWKTWNWRSEMDLMMNGAFFVESGSDVRNVNRQDVIPAKPGKFASQMTRFSGALNCYVNKPC
*****AGILLTLFGLASISPILKANTHDFDEVWQKRA********************SFNKHVHMMFENGSSTRRYLRGRPYTGRCAATNPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMI****************GISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTIL**************************VWKTWNWRSEMDLMMNGAFFVESGSDVRNVN***VI**********MTRFSGALNCYV****
****NAG*LLTLFGLASISPILKANTHDFDEVWQKRA**********YHPNPEEVVSSFNKHVHM********************CAATNPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTILSQGNRFLASNSHHSKEVTKRDSSPQSVWKTWNWRSEMDLMMNGAFFVESGSDVRNVNRQDVIPAKPGKFASQMTRFSGALNCYV**PC
MAAANAGILLTLFGLASISPILKANTHDFDEVWQKRAENARRHALEAYHPNPEEVVSSFNKHVHMMFENGSSTRRYLRGRPYTGRCAATNPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTILSQGNRFLASN*****************WKTWNWRSEMDLMMNGAFFVESGSDVRNVNRQDVIPAKPGKFASQMTRFSGALNCYVNKPC
MAAANAGILLTLFGLASISPILKANTHDFDEVWQKRAENARRHALEAYHPNPEEVVSSFNKHVHMMFENGSSTRRYLRGRPYTGRCAATNPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTILSQGNRFLASNSHHSKEVTKRDSSPQSVWKTWNWRSEMDLMMNGAFFVESGSDVRNVN*QDVIPAKP*K*ASQ******ALNCY*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAANAGILLTLFGLASISPILKANTHDFDEVWQKRAENARRHALEAYHPNPEEVVSSFNKHVHMMFENGSSTRRYLRGRPYTGRCAATNPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTILSQGNRFLASNSHHSKEVTKRDSSPQSVWKTWNWRSEMDLMMNGAFFVESGSDVRNVNRQDVIPAKPGKFASQMTRFSGALNCYVNKPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query437 2.2.26 [Sep-21-2011]
Q9SRH4475 Probable pectate lyase 7 yes no 1.0 0.92 0.553 1e-148
P40973434 Pectate lyase OS=Lilium l N/A no 0.967 0.974 0.608 1e-147
P15722449 Probable pectate lyase P5 N/A no 0.981 0.955 0.571 1e-146
O64510455 Probable pectate lyase 6 no no 0.981 0.942 0.535 1e-142
Q9M9S2459 Probable pectate lyase 3 no no 1.0 0.952 0.520 1e-139
Q9LFP5472 Probable pectate lyase 19 no no 1.0 0.925 0.529 1e-138
Q944R1470 Probable pectate lyase 15 no no 0.954 0.887 0.549 1e-133
Q9M8Z8416 Probable pectate lyase 8 no no 0.929 0.975 0.551 1e-128
Q9LJ42440 Probable pectate lyase 10 no no 0.864 0.859 0.574 1e-127
Q9LRM5452 Probable pectate lyase 9 no no 0.874 0.845 0.560 1e-127
>sp|Q9SRH4|PLY7_ARATH Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1 Back     alignment and function desciption
 Score =  526 bits (1355), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/475 (55%), Positives = 326/475 (68%), Gaps = 38/475 (8%)

Query: 1   MAAANAGILLTLFGLASISPILKANTHD-FDEVWQKRAENARRHALEAYHPNPEEVVSSF 59
           M  A    L+ +  +AS+ P ++AN  D  DE W  +A  AR+H L AYHP+P E+V  F
Sbjct: 1   METARLFKLVCVICIASLIPTIRANVADETDEYWVNKANEARKHTLMAYHPDPYEIVDHF 60

Query: 60  NKH------------------------VHMMFENGSSTRRYLRGR----------PYTGR 85
           ++                         + M+    +STRR L GR            TG 
Sbjct: 61  HERHYDNSTDVEGTEEEKAVASEEEDVIEMISSPTNSTRRSLTGRGKGKGKGKWSKLTGP 120

Query: 86  CAATNPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPG 145
           C A+NPID+CWRC  +WA  RK+L  C +GFG  T GGK G  YVVT+P DDD+VNP+PG
Sbjct: 121 CTASNPIDKCWRCQPDWARRRKKLVHCVRGFGYRTTGGKRGRIYVVTSPRDDDMVNPRPG 180

Query: 146 TLRHAVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQITMQFVKNII 205
           TLRHAVIQ+ PLWI F HDM IRLS+EL+ITSDKTIDARG+NV I  GA ITMQ+V NII
Sbjct: 181 TLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHIAYGAGITMQYVHNII 240

Query: 206 IHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDA 265
           IHGLH+       GG+IRDS++H G R  +DGDGIS+FGA++IW+DH+SMS CQDGLIDA
Sbjct: 241 IHGLHVHHIVKSSGGLIRDSINHFGHRGEADGDGISIFGATNIWLDHISMSKCQDGLIDA 300

Query: 266 VMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFA 325
           +MGSTAIT+SNSHFTH + VMLLGA + +  D  MQVTVA+NHFGK LVQRMPRVR+GF 
Sbjct: 301 IMGSTAITISNSHFTHHNDVMLLGAQNNNMDDKKMQVTVAYNHFGKGLVQRMPRVRWGFV 360

Query: 326 HVVNNDYTHWLMYAIGGSQHPTILSQGNRFLA-SNSHHSKEVTKRDSSPQSVWKTWNWRS 384
           HVVNNDYTHW +YAIGGSQ PTILS GNRF+A  +  H +EVTKRD + +S WK WNWRS
Sbjct: 361 HVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKQHYREVTKRDYASESEWKNWNWRS 420

Query: 385 EMDLMMNGAFFVESGSDVRNV--NRQDVIPAKPGKFASQMTRFSGALNCYVNKPC 437
           E D+ MN A+F +SG+       +RQ +I  K G   S++T+++GAL+C V K C
Sbjct: 421 EKDVFMNNAYFRQSGNPHFKCSHSRQQMIKPKNGMAVSKLTKYAGALDCRVGKAC 475

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|P40973|PLY_LILLO Pectate lyase OS=Lilium longiflorum PE=2 SV=1 Back     alignment and function description
>sp|P15722|PLY59_SOLLC Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1 Back     alignment and function description
>sp|O64510|PLY6_ARATH Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1 Back     alignment and function description
>sp|Q9M9S2|PLY3_ARATH Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFP5|PLY19_ARATH Probable pectate lyase 19 OS=Arabidopsis thaliana GN=At5g15110 PE=2 SV=1 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
449516840439 PREDICTED: pectate lyase-like [Cucumis s 0.977 0.972 0.694 1e-180
449469661434 PREDICTED: LOW QUALITY PROTEIN: probable 0.965 0.972 0.685 1e-176
224124024435 predicted protein [Populus trichocarpa] 0.995 1.0 0.656 1e-175
359491342434 PREDICTED: probable pectate lyase P59-li 0.977 0.983 0.655 1e-164
255558212440 Pectate lyase precursor, putative [Ricin 0.979 0.972 0.627 1e-162
357477447445 Pectate lyase [Medicago truncatula] gi|3 0.967 0.950 0.629 1e-160
449459456431 PREDICTED: probable pectate lyase 7-like 0.974 0.988 0.609 1e-158
224099737429 predicted protein [Populus trichocarpa] 0.965 0.983 0.612 1e-157
296082858468 unnamed protein product [Vitis vinifera] 0.956 0.893 0.611 1e-157
359488970439 PREDICTED: pectate lyase-like [Vitis vin 0.956 0.952 0.611 1e-157
>gi|449516840|ref|XP_004165454.1| PREDICTED: pectate lyase-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 298/429 (69%), Positives = 353/429 (82%), Gaps = 2/429 (0%)

Query: 9   LLTLFGLASISPILKANTHDFDEVWQKRAENARRHALEAYHPNPEEVVSSFNKHVHMMFE 68
           LL +FG   I P LKAN  DFDEVWQKRA  A++ + EAY P+PEE  ++FNK VH   +
Sbjct: 13  LLMIFGFVMIFPTLKANIADFDEVWQKRAIEAQKASFEAYEPHPEEETNNFNKQVHRSLD 72

Query: 69  NGSSTRRYLRGRPYTGRCAATNPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPF 128
            G++TRR+LR   YTG C ATNPID+CWRCDRNWA NRK+LADCA GFGR T GGK+G  
Sbjct: 73  GGNNTRRHLR--KYTGPCLATNPIDRCWRCDRNWARNRKKLADCALGFGRRTTGGKDGKI 130

Query: 129 YVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNV 188
           YVV + +D+DLVNPKPGTLRHAVIQERPLWI FAHDMVIRLSEEL++T DKT+D RG+NV
Sbjct: 131 YVVRDSSDNDLVNPKPGTLRHAVIQERPLWIIFAHDMVIRLSEELIVTDDKTLDGRGANV 190

Query: 189 QIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHI 248
            I NG QIT+QFVKNIIIH LHI   KAG GGMIRDSVSH+GFR+ SDGDGISMFGAS +
Sbjct: 191 HIANGGQITLQFVKNIIIHNLHIHDIKAGNGGMIRDSVSHYGFRTRSDGDGISMFGASRV 250

Query: 249 WIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNH 308
           WIDHVSMS CQDGLIDAVM STAIT+SN HFTH + V+LLGAS+G+  D IMQVT+AFNH
Sbjct: 251 WIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVILLGASNGYSNDQIMQVTLAFNH 310

Query: 309 FGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTILSQGNRFLASNSHHSKEVTK 368
           FGK LVQRMPR R+GF HVVNNDYTHWLMYAIGGS +PTI+SQGNRF+A  + + KEVTK
Sbjct: 311 FGKGLVQRMPRCRWGFIHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNCKEVTK 370

Query: 369 RDSSPQSVWKTWNWRSEMDLMMNGAFFVESGSDVRNVNRQDVIPAKPGKFASQMTRFSGA 428
           R  +P+S W++WNWRSE DLMMNGAFF++SG+ ++  +++DVI +KPG F +++TRF+G 
Sbjct: 371 RVYAPESEWRSWNWRSEGDLMMNGAFFIQSGNPIKRYSKKDVIHSKPGTFVTRLTRFAGP 430

Query: 429 LNCYVNKPC 437
           L C  N+PC
Sbjct: 431 LKCKKNQPC 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449469661|ref|XP_004152537.1| PREDICTED: LOW QUALITY PROTEIN: probable pectate lyase P59-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224124024|ref|XP_002330086.1| predicted protein [Populus trichocarpa] gi|222871220|gb|EEF08351.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359491342|ref|XP_002272638.2| PREDICTED: probable pectate lyase P59-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255558212|ref|XP_002520133.1| Pectate lyase precursor, putative [Ricinus communis] gi|223540625|gb|EEF42188.1| Pectate lyase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357477447|ref|XP_003609009.1| Pectate lyase [Medicago truncatula] gi|355510064|gb|AES91206.1| Pectate lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449459456|ref|XP_004147462.1| PREDICTED: probable pectate lyase 7-like [Cucumis sativus] gi|449509225|ref|XP_004163529.1| PREDICTED: probable pectate lyase 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224099737|ref|XP_002311599.1| predicted protein [Populus trichocarpa] gi|222851419|gb|EEE88966.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296082858|emb|CBI22159.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488970|ref|XP_002282500.2| PREDICTED: pectate lyase-like [Vitis vinifera] gi|147866287|emb|CAN79927.1| hypothetical protein VITISV_042447 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
TAIR|locus:2058842455 AT2G02720 [Arabidopsis thalian 0.990 0.951 0.538 1.3e-130
TAIR|locus:2012562459 AT59 [Arabidopsis thaliana (ta 1.0 0.952 0.527 4e-129
TAIR|locus:2100247475 AT3G01270 [Arabidopsis thalian 0.881 0.810 0.606 6.6e-129
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.954 0.887 0.549 1.3e-123
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.885 0.930 0.583 5.1e-122
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.885 0.928 0.578 3.2e-120
TAIR|locus:2093131440 AT3G24670 [Arabidopsis thalian 0.864 0.859 0.577 1.1e-119
TAIR|locus:2093761452 AT3G24230 [Arabidopsis thalian 0.874 0.845 0.568 1.3e-118
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.961 0.974 0.531 1.6e-118
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.869 0.931 0.568 2e-118
TAIR|locus:2058842 AT2G02720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
 Identities = 244/453 (53%), Positives = 318/453 (70%)

Query:     5 NAGILLTLF---GLASISPILKANTHDFDEVWQKRAENARRHALEAYHPNPEEVVSSFNK 61
             N G  + +F    L  + P ++A+  ++DE W +R  NA R  LE+Y PNPE V   FN 
Sbjct:     3 NLGSYVFVFVALSLTVVVPSVQAHIAEYDEYWTQRQTNALRETLESYDPNPENVTDHFNY 62

Query:    62 HVHMMFEN-G--SSTRRYLR----GRPYT---GRCAATNPIDQCWRCDRNWANNRKRLAD 111
             H  +  E  G  + TRR LR    G+  T   GR  + N ID+CWR D+NW  NRK+LAD
Sbjct:    63 HAALAMETTGIVNETRRDLRQVGRGKKTTRRGGRFESLNAIDKCWRGDKNWDKNRKKLAD 122

Query:   112 CAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIRLSE 171
             C  GFGR T GGKNGP YVVT+P+D+DL+ PKPGT+RHAV ++RPLWI FA  M+I+L +
Sbjct:   123 CVLGFGRKTTGGKNGPIYVVTDPSDNDLLKPKPGTIRHAVTRDRPLWIIFARSMIIKLQQ 182

Query:   172 ELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGF 231
             EL+IT+DKTID RG+ + I  GA +T+QFV+N+IIH +HI++ K G GG+I DS  H G 
Sbjct:   183 ELIITNDKTIDGRGAKIYITGGAGLTLQFVRNVIIHNIHIKQIKRGAGGLIIDSEQHFGL 242

Query:   232 RSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGAS 291
             R+ SDGDGI++FGA+++WIDHVSM+ C DG+IDA+MGSTAIT+SNSHFT  D VML G +
Sbjct:   243 RTVSDGDGINIFGATNVWIDHVSMTDCSDGMIDAIMGSTAITISNSHFTDHDEVMLFGGT 302

Query:   292 DGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTILSQ 351
             +    D  MQ+TVAFNHFGK+L QRMPRVRFG  HVVNNDYTHW MYAIGG+ +PTI+SQ
Sbjct:   303 NKDVIDKKMQITVAFNHFGKRLKQRMPRVRFGLVHVVNNDYTHWEMYAIGGNMNPTIISQ 362

Query:   352 GNRFLASNSHHSKEVTKRDSSPQSVWKTWNWRSEMDLMMNGAFFVESG-SDVRNVNRQDV 410
             GNRF+A     SK+VTKR+ +P   WK+WNW+SE D  +NGA+FV+SG ++  +   ++ 
Sbjct:   363 GNRFIAPPIEDSKQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNP 422

Query:   411 IPAK------PGKFASQMTRFSGALNCYVNKPC 437
             IP K      PG    ++T+ +G L C   K C
Sbjct:   423 IPRKFAIRPQPGTKVRRLTKDAGTLGCKPGKSC 455
GO:0005886 "plasma membrane" evidence=ISM
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=IEA;ISS
TAIR|locus:2012562 AT59 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100247 AT3G01270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P40972PLY_TOBAC4, ., 2, ., 2, ., 20.54340.83290.9168N/Ano
P40973PLY_LILLO4, ., 2, ., 2, ., 20.60830.96790.9746N/Ano
P15721PLY56_SOLLC4, ., 2, ., 2, ., 20.52710.83060.9120N/Ano
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.60620.80540.8778N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.53580.86490.9356N/Ano
P27761MPA13_AMBARNo assigned EC number0.52540.80320.8841N/Ano
P15722PLY59_SOLLC4, ., 2, ., 2, ., 20.57140.98160.9554N/Ano
P27759MPA11_AMBARNo assigned EC number0.50990.80090.8838N/Ano
Q9SRH4PLY7_ARATH4, ., 2, ., 2, ., 20.55361.00.92yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.976
4th Layer4.2.2.20.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01290005
hypothetical protein (435 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
smart00656190 smart00656, Amb_all, Amb_all domain 2e-75
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 2e-62
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 5e-28
pfam0443154 pfam04431, Pec_lyase_N, Pectate lyase, N terminus 7e-18
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  233 bits (596), Expect = 2e-75
 Identities = 97/207 (46%), Positives = 121/207 (58%), Gaps = 28/207 (13%)

Query: 164 DMVIRLS--EELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGM 221
           D+ I L     ++I S+KTID RGS V+I  G  +T++ V N+II  L I   K   G  
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEI-KGGGLTIKSVSNVIIRNLTIHDPKPVYG-- 57

Query: 222 IRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQ---------DGLIDAVMGSTAI 272
                        SDGD IS+ G+S++WIDHVS+SGC          DGLID   GST +
Sbjct: 58  -------------SDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 273 TVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDY 332
           T+SN++F +   VMLLG SD    D  M+VT+A N+FG  L QR PRVRFG+ HV NN Y
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGN-LRQRAPRVRFGYVHVYNNYY 163

Query: 333 THWLMYAIGGSQHPTILSQGNRFLASN 359
           T W  YAIGG    TILS+GN F A  
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|190986 pfam04431, Pec_lyase_N, Pectate lyase, N terminus Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 437
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 99.76
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.79
PLN02218431 polygalacturonase ADPG 98.25
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.13
PLN02188404 polygalacturonase/glycoside hydrolase family prote 98.08
PLN03003456 Probable polygalacturonase At3g15720 98.07
PLN02155394 polygalacturonase 98.06
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.97
PLN02793443 Probable polygalacturonase 97.97
PLN03010409 polygalacturonase 97.92
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.86
PLN02218431 polygalacturonase ADPG 97.8
PLN03003456 Probable polygalacturonase At3g15720 97.68
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.63
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.57
PLN02155394 polygalacturonase 97.56
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.53
PLN03010409 polygalacturonase 97.53
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.49
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.47
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.25
PLN02793443 Probable polygalacturonase 97.11
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.09
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.06
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.96
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.94
PLN02480343 Probable pectinesterase 96.72
PLN02197588 pectinesterase 96.53
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.3
smart00656190 Amb_all Amb_all domain. 96.15
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 95.95
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 95.76
PLN02176340 putative pectinesterase 95.51
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.29
PLN02682369 pectinesterase family protein 94.73
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.61
PLN02432293 putative pectinesterase 94.37
PLN02304379 probable pectinesterase 94.18
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.1
PLN02773317 pectinesterase 93.93
PLN02301548 pectinesterase/pectinesterase inhibitor 93.79
PLN02634359 probable pectinesterase 93.73
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.73
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.61
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.58
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 93.56
PLN02314586 pectinesterase 93.52
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.52
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.38
PLN02217670 probable pectinesterase/pectinesterase inhibitor 93.35
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.33
PLN02665366 pectinesterase family protein 93.3
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 93.27
PLN02916502 pectinesterase family protein 93.27
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 93.05
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 92.95
PLN02484587 probable pectinesterase/pectinesterase inhibitor 92.69
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 92.65
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 92.5
PLN02671359 pectinesterase 92.03
PLN02468565 putative pectinesterase/pectinesterase inhibitor 91.85
PLN02497331 probable pectinesterase 91.85
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 91.75
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 91.57
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 89.36
PRK10531422 acyl-CoA thioesterase; Provisional 87.93
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 86.01
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 85.97
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3e-56  Score=436.84  Aligned_cols=269  Identities=29%  Similarity=0.383  Sum_probs=218.6

Q ss_pred             CCCCCCCCcEEEecCCCCCCCCCCCCchHHHHhhcCCCeEEEEeeeeEEeeC------ceeEeccCceEEecCCcceEec
Q 013757          119 GTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIRLS------EELLITSDKTIDARGSNVQIYN  192 (437)
Q Consensus       119 ~ttGG~gG~vy~VT~~~d~~~~n~~pGtLR~av~~~~P~~IvF~~~g~I~L~------~~L~v~SnkTI~G~ga~i~I~~  192 (437)
                      +||||.||++++|++.+|          |...++..+|.++|.-+.|+|++.      .+|.+.|||||.|.|++.+|. 
T Consensus        47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~-  115 (345)
T COG3866          47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV-  115 (345)
T ss_pred             CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence            799999999999999999          788899999985555566999987      567889999999999999999 


Q ss_pred             CceEEEEeeeeEEEEccEEeeeecCCCCceecCCCCCCCccCCCCCceEe-eCCceEEEeeeeeec--------CCCCee
Q 013757          193 GAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISM-FGASHIWIDHVSMSG--------CQDGLI  263 (437)
Q Consensus       193 G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~~~~g~~~~sd~DaIsI-~gs~nVWIDHcS~s~--------~~Dgli  263 (437)
                      |.+|.|+.+.|||||||+|++...+                ....|+|+| .+++|||||||+|+.        ..||++
T Consensus       116 g~gl~i~~a~NVIirNltf~~~~~~----------------d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~  179 (345)
T COG3866         116 GGGLKIRDAGNVIIRNLTFEGFYQG----------------DPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV  179 (345)
T ss_pred             eceEEEEeCCcEEEEeeEEEeeccC----------------CCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence            9999999999999999999976421                112699999 689999999999999        689999


Q ss_pred             eeeeCCeeEEEecceeccCCeeeecCCCCCCC-CCCcceEEEEeeEEcCCCCCCCcccccceEEEEcceEeCccceEEec
Q 013757          264 DAVMGSTAITVSNSHFTHQDHVMLLGASDGHP-QDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGG  342 (437)
Q Consensus       264 Di~~gS~~ITISnn~f~~H~k~mLiG~sds~~-~d~~~~vTi~hN~F~~~~~~R~Pr~R~G~~HvvNN~y~nw~~yaigg  342 (437)
                      ||++++++||||||+|++|+|.+|+|.+|+.. +|++.+||+||||| +++.||+||+|||.+||+||||.....|+++.
T Consensus       180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~  258 (345)
T COG3866         180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI  258 (345)
T ss_pred             EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence            99999999999999999999999999999854 56899999999999 59999999999999999999999665444444


Q ss_pred             CCC--ceEEEEccEEecCCCCCccceeeecCCCCcccccceEecCCceEeecceEeecCCcc-----cc--CCCCCcccC
Q 013757          343 SQH--PTILSQGNRFLASNSHHSKEVTKRDSSPQSVWKTWNWRSEMDLMMNGAFFVESGSDV-----RN--VNRQDVIPA  413 (437)
Q Consensus       343 ~~~--~~I~~egN~F~ag~~~~~k~vt~r~~~~~~~~~~~~w~s~gd~~~nGa~f~~sG~~~-----~~--y~~~~~~~~  413 (437)
                      .++  ++|++|+|||+....+..---|++.        .++|..     -.|++|..++...     ..  +...++|++
T Consensus       259 ~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--------~GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Ytv  325 (345)
T COG3866         259 TIGTSAKIYVENNYFENGSEGLGFLDTKGT--------SGYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYTV  325 (345)
T ss_pred             eeccceEEEEecceeccCCCCceeeecCCc--------cceEEe-----ccCceecccCCcccccCCccCCCCCCccccc
Confidence            444  9999999999997544221111111        123331     2345554444332     11  556678899


Q ss_pred             CCcchHH-HHhcccCC
Q 013757          414 KPGKFAS-QMTRFSGA  428 (437)
Q Consensus       414 ~p~~~v~-~lt~~AG~  428 (437)
                      +|.+.|+ .+|++||+
T Consensus       326 d~~~dVks~Vt~yAGa  341 (345)
T COG3866         326 DPPEDVKSFVTNYAGA  341 (345)
T ss_pred             CChHHhhhhhhccccc
Confidence            9999997 69999995

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 3e-84
3zsc_A340 Catalytic Function And Substrate Recognition Of The 5e-19
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 2e-14
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 6e-14
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 1e-12
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 4e-12
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 6e-11
3krg_A399 Structural Insights Into Substrate Specificity And 8e-11
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 1e-10
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 4e-10
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 1e-07
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 1e-07
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 2e-06
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 2e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  309 bits (791), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 162/346 (46%), Positives = 214/346 (61%), Gaps = 8/346 (2%)
Query: 90  NPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRH 149
           NPID CWR D NW  NR +LADCA GFG  T+GGK G FY VT+  DD+ VNP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTS-TDDNPVNPTPGTLRY 60
Query: 150 AVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQ-ITMQFVKNIIIHG 208
              +E+ LWI F+ +M I+L   L +   KTID RG++V + NG   + M+ V ++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 209 LHIRKTKAGKGG--MIRDSVSHHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAV 266
           LHI        G  ++ +S+      +  DGD I+M   ++ WIDH S+S C DGLID  
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQ-DGDAITMRNVTNAWIDHNSLSDCSDGLIDVT 179
Query: 267 MGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAH 326
           +GST IT+SN+HF +   VMLLG  D +  D  M+VTVAFN FG    QRMPR R+G  H
Sbjct: 180 LGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH 239
Query: 327 VVNNDYTHWLMYAIGGSQHPTILSQGNRFLASNSHHSKEVTKR-DSSPQSVWKTWNWRSE 385
           V NN+Y  W +YAIGGS +PTILS+GN F A +  + KEVTKR      S    W WRS 
Sbjct: 240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRST 299
Query: 386 MDLMMNGAFFVESG-SDVRNV-NRQDVIPAKPGKFASQMTRFSGAL 429
            D  +NGA+FV SG ++  N+ N  +    + G  A Q+T+ +G +
Sbjct: 300 RDAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-126
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 8e-85
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 1e-76
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 1e-71
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 2e-71
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 2e-66
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 2e-60
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 2e-60
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 3e-60
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 2e-57
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 3e-50
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  367 bits (944), Expect = e-126
 Identities = 161/345 (46%), Positives = 207/345 (60%), Gaps = 6/345 (1%)

Query: 90  NPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRH 149
           NPID CWR D NW  NR +LADCA GFG  T+GGK G FY VT+  DD+ VNP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 150 AVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQI-YNGAQITMQFVKNIIIHG 208
              +E+ LWI F+ +M I+L   L +   KTID RG++V +   G  + M+ V ++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 209 LHIRKTKAGKGGMIRDSVSHHGFRS-SSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVM 267
           LHI        G +  S S       + DGD I+M   ++ WIDH S+S C DGLID  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 268 GSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHV 327
           GST IT+SN+HF +   VMLLG  D +  D  M+VTVAFN FG    QRMPR R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 328 VNNDYTHWLMYAIGGSQHPTILSQGNRFLASNSHHSKEVTKR-DSSPQSVWKTWNWRSEM 386
            NN+Y  W +YAIGGS +PTILS+GN F A +  + KEVTKR      S    W WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 387 DLMMNGAFFVESGSDV--RNVNRQDVIPAKPGKFASQMTRFSGAL 429
           D  +NGA+FV SG        N  +    + G  A Q+T+ +G +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.58
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.45
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.36
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.33
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.3
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.26
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.26
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.24
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.18
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.18
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.18
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.13
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.12
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.07
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 98.06
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 98.03
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.97
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.94
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.9
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.85
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.85
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.73
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.66
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.6
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.49
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.49
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.48
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.34
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.31
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.3
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.26
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.21
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.21
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.19
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.88
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.75
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.74
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 96.66
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.66
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.64
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.63
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.25
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.23
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.02
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 95.9
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.64
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.44
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.4
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 95.36
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.85
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 94.76
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.46
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 93.49
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 93.27
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 85.67
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 80.01
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=2.4e-103  Score=794.88  Aligned_cols=341  Identities=47%  Similarity=0.814  Sum_probs=325.2

Q ss_pred             CCCCccccccCcchhccccccccCCccccCCCCCCCCCcEEEecCCCCCCCCCCCCchHHHHhhcCCCeEEEEeeeeEEe
Q 013757           89 TNPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIR  168 (437)
Q Consensus        89 ~npid~cwr~~~~w~~~r~~la~~a~GFG~~ttGG~gG~vy~VT~~~d~~~~n~~pGtLR~av~~~~P~~IvF~~~g~I~  168 (437)
                      +||||+||||+|+|+.+||+|||||+|||++||||+||++|+||+++| ++++|+|||||+||++++||||||+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999876 6899999999999999999999999999999


Q ss_pred             eCceeEeccCceEEecCCcceEec-CceEEEEeeeeEEEEccEEeeeecCCCCce-ecCCCCCCCccCCCCCceEeeCCc
Q 013757          169 LSEELLITSDKTIDARGSNVQIYN-GAQITMQFVKNIIIHGLHIRKTKAGKGGMI-RDSVSHHGFRSSSDGDGISMFGAS  246 (437)
Q Consensus       169 L~~~L~v~SnkTI~G~ga~i~I~~-G~gI~i~~asNVIIrnL~I~~~~~g~gg~i-~ds~~~~g~~~~sd~DaIsI~gs~  246 (437)
                      |+++|.|.|||||+|||++++|.+ |.||+|++++|||||||+|+++.|..++.| +++++|+|.+..+++|+|+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999995 479999999999999999999988776767 899999999888999999999999


Q ss_pred             eEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEcCCCCCCCcccccceEE
Q 013757          247 HIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAH  326 (437)
Q Consensus       247 nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~~R~Pr~R~G~~H  326 (437)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|++..|+.|+||||||+|+.++.+||||+|+|++|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999998877888999999999955899999999999999


Q ss_pred             EEcceEeCccceEEecCCCceEEEEccEEecCCCCCccceeeecCCC-CcccccceEecCCceEeecceEeecCCccc-c
Q 013757          327 VVNNDYTHWLMYAIGGSQHPTILSQGNRFLASNSHHSKEVTKRDSSP-QSVWKTWNWRSEMDLMMNGAFFVESGSDVR-N  404 (437)
Q Consensus       327 vvNN~y~nw~~yaigg~~~~~I~~egN~F~ag~~~~~k~vt~r~~~~-~~~~~~~~w~s~gd~~~nGa~f~~sG~~~~-~  404 (437)
                      |+||||++|.+|++++++++++++|||||++++++..|++++|.+++ +.+|++|+|+++||+|+||++|.+||.... .
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~  319 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCC
Confidence            99999999999999999999999999999999999899999998876 678999999999999999999999997754 3


Q ss_pred             -CCCCCcccCCCcchHHHHhcccCCCC
Q 013757          405 -VNRQDVIPAKPGKFASQMTRFSGALN  430 (437)
Q Consensus       405 -y~~~~~~~~~p~~~v~~lt~~AG~l~  430 (437)
                       |+++++|+++|+++|++||++||||.
T Consensus       320 ~y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             CCCcccccccCCHHHHHHHhhhccCCC
Confidence             99999999999999999999999995
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 437
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-131
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-73
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 1e-59
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 8e-57
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 3e-50
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-35
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 8e-05
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  379 bits (973), Expect = e-131
 Identities = 162/345 (46%), Positives = 208/345 (60%), Gaps = 6/345 (1%)

Query: 90  NPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRH 149
           NPID CWR D NW  NR +LADCA GFG  T+GGK G FY VT+  DD+ VNP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 150 AVIQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYN-GAQITMQFVKNIIIHG 208
              +E+ LWI F+ +M I+L   L +   KTID RG++V + N G  + M+ V ++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 209 LHIRKTKAGKGGMIRDSVS-HHGFRSSSDGDGISMFGASHIWIDHVSMSGCQDGLIDAVM 267
           LHI        G +  S S       + DGD I+M   ++ WIDH S+S C DGLID  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 268 GSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHV 327
           GST IT+SN+HF +   VMLLG  D +  D  M+VTVAFN FG    QRMPR R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 328 VNNDYTHWLMYAIGGSQHPTILSQGNRFLASNSHHSKEVTKR-DSSPQSVWKTWNWRSEM 386
            NN+Y  W +YAIGGS +PTILS+GN F A +  + KEVTKR      S    W WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 387 DLMMNGAFFVESGSDVRN--VNRQDVIPAKPGKFASQMTRFSGAL 429
           D  +NGA+FV SG        N  +    + G  A Q+T+ +G +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.35
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.15
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.05
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 98.02
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.98
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.95
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.9
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.81
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.68
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.65
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.51
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.37
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.31
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.96
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.79
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.53
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.49
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.87
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 95.83
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.59
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.58
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.36
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.3
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.04
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 93.86
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 93.44
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 93.29
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 93.22
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=2e-96  Score=741.46  Aligned_cols=341  Identities=47%  Similarity=0.811  Sum_probs=311.5

Q ss_pred             CCCCccccccCcchhccccccccCCccccCCCCCCCCCcEEEecCCCCCCCCCCCCchHHHHhhcCCCeEEEEeeeeEEe
Q 013757           89 TNPIDQCWRCDRNWANNRKRLADCAQGFGRGTIGGKNGPFYVVTNPADDDLVNPKPGTLRHAVIQERPLWITFAHDMVIR  168 (437)
Q Consensus        89 ~npid~cwr~~~~w~~~r~~la~~a~GFG~~ttGG~gG~vy~VT~~~d~~~~n~~pGtLR~av~~~~P~~IvF~~~g~I~  168 (437)
                      .||||+||||+|||+++||+||+||+|||++||||+||+||+||+++| ++.+|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            399999999999999999999999999999999999999999999977 5788999999999999999999999999999


Q ss_pred             eCceeEeccCceEEecCCcceEec-CceEEEEeeeeEEEEccEEeeeecCCCCceecCC-CCCCCccCCCCCceEeeCCc
Q 013757          169 LSEELLITSDKTIDARGSNVQIYN-GAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSV-SHHGFRSSSDGDGISMFGAS  246 (437)
Q Consensus       169 L~~~L~v~SnkTI~G~ga~i~I~~-G~gI~i~~asNVIIrnL~I~~~~~g~gg~i~ds~-~~~g~~~~sd~DaIsI~gs~  246 (437)
                      |+++|.|+|||||+|||+.+.|.. |.+|.+..++|||||||+||++.++..+.+..++ .+.+....+++|+|+|.+++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            999999999999999999999883 4568999999999999999998776555443221 23334456889999999999


Q ss_pred             eEEEeeeeeecCCCCeeeeeeCCeeEEEecceeccCCeeeecCCCCCCCCCCcceEEEEeeEEcCCCCCCCcccccceEE
Q 013757          247 HIWIDHVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAH  326 (437)
Q Consensus       247 nVWIDHcS~s~~~DgliDi~~gS~~ITISnn~f~~H~k~mLiG~sds~~~d~~~~vTi~hN~F~~~~~~R~Pr~R~G~~H  326 (437)
                      |||||||+|+|+.||+||+++++++||||||+|++|.|+||+|+++....++.++||||||+|.++..+|+|++|+|++|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999988777788999999999987788899999999999


Q ss_pred             EEcceEeCccceEEecCCCceEEEEccEEecCCCCCccceeeecCCC-CcccccceEecCCceEeecceEeecCCccc-c
Q 013757          327 VVNNDYTHWLMYAIGGSQHPTILSQGNRFLASNSHHSKEVTKRDSSP-QSVWKTWNWRSEMDLMMNGAFFVESGSDVR-N  404 (437)
Q Consensus       327 vvNN~y~nw~~yaigg~~~~~I~~egN~F~ag~~~~~k~vt~r~~~~-~~~~~~~~w~s~gd~~~nGa~f~~sG~~~~-~  404 (437)
                      ++||||++|..|++++++++++++|||||++++.+..|+++++.... ..++++|.|++++|+++||++|.++|.... .
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~  319 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccc
Confidence            99999999999999999999999999999999999889999886543 446899999999999999999999987653 3


Q ss_pred             -CCCCCcccCCCcchHHHHhcccCCCC
Q 013757          405 -VNRQDVIPAKPGKFASQMTRFSGALN  430 (437)
Q Consensus       405 -y~~~~~~~~~p~~~v~~lt~~AG~l~  430 (437)
                       |.+++++++.|++.|++|+++||||+
T Consensus       320 ~~~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cccCccccccCCHHHHHhhhccCCCCC
Confidence             89999999999999999999999995
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure