Citrus Sinensis ID: 013779
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 436 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WWW9 | 558 | D-xylose-proton symporter | yes | no | 0.990 | 0.774 | 0.840 | 0.0 | |
| Q6AWX0 | 503 | D-xylose-proton symporter | no | no | 0.981 | 0.850 | 0.628 | 1e-149 | |
| Q8L6Z8 | 503 | D-xylose-proton symporter | no | no | 0.981 | 0.850 | 0.589 | 1e-140 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.910 | 0.868 | 0.361 | 8e-59 | |
| O52733 | 457 | D-xylose-proton symporter | yes | no | 0.919 | 0.877 | 0.334 | 2e-57 | |
| O34718 | 473 | Major myo-inositol transp | no | no | 0.940 | 0.866 | 0.326 | 5e-56 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.910 | 0.861 | 0.343 | 1e-54 | |
| P0AEP1 | 464 | Galactose-proton symporte | N/A | no | 0.926 | 0.870 | 0.327 | 1e-52 | |
| P0AEP2 | 464 | Galactose-proton symporte | yes | no | 0.926 | 0.870 | 0.327 | 1e-52 | |
| Q8VZR6 | 509 | Inositol transporter 1 OS | no | no | 0.853 | 0.730 | 0.357 | 2e-52 |
| >sp|Q0WWW9|XYLL3_ARATH D-xylose-proton symporter-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g59250 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/432 (84%), Positives = 392/432 (90%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 64
QSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+RELIIAAVLY LG+
Sbjct: 127 QSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGS 186
Query: 65 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
L T AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL
Sbjct: 187 LITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 246
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 184
G+ VGSFQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQGKG LQEYKE+
Sbjct: 247 GFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEK 306
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGPNLKA IGGGL
Sbjct: 307 AMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGL 366
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVAKVDDLGRRP
Sbjct: 367 VLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRP 426
Query: 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSEIFPLR
Sbjct: 427 LLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLR 486
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424
TRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF IA +++LF++ VPETKG
Sbjct: 487 TRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKG 546
Query: 425 LSLEEIESKILK 436
LSLEEIESKILK
Sbjct: 547 LSLEEIESKILK 558
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6AWX0|XYLL2_ARATH D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/431 (62%), Positives = 336/431 (77%), Gaps = 3/431 (0%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 64
QSP LSG +W+NLS+V +GLV SGSLYGAL GSI+ ++IAD +GR++ELI+AA+LY +GA
Sbjct: 76 QSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRKELILAALLYLVGA 135
Query: 65 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
L TA AP VL++GR++YG+ +GLAMH AP+YIAET PS IRG L+SLKE FIVLG++
Sbjct: 136 LVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPIRGQLVSLKEFFIVLGMVG 195
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 184
GY +GS +N GWRYMY S PLA++MGIGMW LP SPRWLLLR +QGKG+++ +E
Sbjct: 196 GYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRWLLLRVIQGKGNVENQREA 255
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
AI +L LR D +E Q+ + L L ++ E E +F E+FQG LKA IIGGGL
Sbjct: 256 AIKSLCCLRGPAFVDSAAE-QVNEILAEL--TFVGEDKEVTFGELFQGKCLKALIIGGGL 312
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYA ILQ+AGFSAA DATRVS+++G+ KL+MT +AV +D LGRRP
Sbjct: 313 VLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTGVAVVVIDRLGRRP 372
Query: 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LL+GGV G+ +SL LL +YY P+VAV ALLLYVGCYQ+SFGPI WLM+SEIFPL+
Sbjct: 373 LLLGGVGGMVVSLFLLGSYYLFFSASPVVAVVALLLYVGCYQLSFGPIGWLMISEIFPLK 432
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424
RGRG+SLAVL NFG+NA+VTFAFSPLKELLGA +F F I L+++FI VPETKG
Sbjct: 433 LRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFCGFGVICVLSLVFIFFIVPETKG 492
Query: 425 LSLEEIESKIL 435
L+LEEIE+K L
Sbjct: 493 LTLEEIEAKCL 503
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L6Z8|XYLL1_ARATH D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust.
Identities = 254/431 (58%), Positives = 325/431 (75%), Gaps = 3/431 (0%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 64
+SP LSG +W++LS+V +G++ SGSLYGAL+GSI+ +S+AD +GR++ELI+AA LY +GA
Sbjct: 76 KSPTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVADIIGRRKELILAAFLYLVGA 135
Query: 65 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
+ T AP +L++GR+ YG+GIGL MH AP+YIAET PSQIRG +ISLKE VLG++
Sbjct: 136 IVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQIRGRMISLKEFSTVLGMVG 195
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 184
GY +GS I + GWRYMY P ++MG GM LP SPRWLLLRA+QG+G+ + ++
Sbjct: 196 GYGIGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASPRWLLLRALQGQGNGENLQQA 255
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
AI +L +LR D +E Q+ + L L S E E +F E+F+G LKA I GGL
Sbjct: 256 AIRSLCRLRGSVIADSAAE-QVNEILAEL--SLVGEDKEATFGELFRGKCLKALTIAGGL 312
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYA ILQ+AGFSAAADATR+S+++G+ KLVMT ++V +D +GRRP
Sbjct: 313 VLFQQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLVMTGVSVIVIDRVGRRP 372
Query: 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LL+ GV G+ +SL LL +YY P VAV+ALLLYVGCYQ+SFGPI WLM+SEIFPL+
Sbjct: 373 LLLCGVSGMVISLFLLGSYYMFYKNVPAVAVAALLLYVGCYQLSFGPIGWLMISEIFPLK 432
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424
RGRGISLAVL NFG+NA+VTFAFSPLKELLGA +F F I +++ FI VPETKG
Sbjct: 433 LRGRGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVICVVSLFFIYYIVPETKG 492
Query: 425 LSLEEIESKIL 435
L+LEEIE+K L
Sbjct: 493 LTLEEIEAKCL 503
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (580), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 152/421 (36%), Positives = 229/421 (54%), Gaps = 24/421 (5%)
Query: 17 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL 76
L+A GLVVS L GA+LGS + D GRK+ ++ AA+L+ +G L A AP GV+
Sbjct: 40 LNAFTEGLVVSSLLVGAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVM 99
Query: 77 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 136
++ R++ GL +G + PLY++E P RG L SL +L I +GILL Y V +A
Sbjct: 100 VLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADA- 158
Query: 137 GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRP 196
WR+M GL+A +LL+ IG+ +P SPRWL +E K + I L KLR
Sbjct: 159 EAWRWMLGLAAVPSLLLLIGILFMPESPRWLFTNG-------EESKAKKI--LEKLR--- 206
Query: 197 PGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSV 256
G K +++I D +++ EG E+F A I G GL QQ G ++
Sbjct: 207 -GTKDIDQEIHDI------KEAEKQDEGGLKELFDPWVRPALIAGLGLAFLQQFIGTNTI 259
Query: 257 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 316
+YYA + GF +A +V IG ++MT +A+ +D +GR+PLL+ G G+ +S
Sbjct: 260 IYYAPKTFTNVGFGNSASILG-TVGIGTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVIS 318
Query: 317 LLLLSAYYKILGGFPLVA---VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA 373
L++L+ P + V L +++ + +S+GP+ W+M+ E+FPL RG G ++
Sbjct: 319 LIVLALVNLFFDNTPAASWTTVICLGVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVS 378
Query: 374 VLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESK 433
L IV+ + L E +G +FL++AAI +A LF+ V ETKG SLEEIE
Sbjct: 379 TLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIMAFLFVRFKVTETKGRSLEEIEQD 438
Query: 434 I 434
+
Sbjct: 439 L 439
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/422 (33%), Positives = 236/422 (55%), Gaps = 21/422 (4%)
Query: 16 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV 75
NL + Q G VVS L GA+LG+ ++ +D GR++ L+++A+++ +GAL +A++P
Sbjct: 39 NLGSWQQGWVVSAVLLGAILGAAIIGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWT 98
Query: 76 LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA 135
L++ R++ G+ +G A P Y+AE PS RGT+ SL +L ++ GILL Y
Sbjct: 99 LIISRIILGMAVGAASALIPTYLAELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGF 158
Query: 136 VGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRR 195
GWR+M G +A A L+ +G LP SPR+L+ G L E + + + K +
Sbjct: 159 YTGWRWMLGFAAIPAALLFLGGLILPESPRFLV-----KSGHLDEAR-HVLDTMNKHDQV 212
Query: 196 PPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPS 255
++++ Q +VS G + E+F + IIG GL +FQQ+ G +
Sbjct: 213 AVNKEINDIQESAKIVS-----------GGWSELFGKMVRPSLIIGIGLAIFQQVMGCNT 261
Query: 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 315
VLYYA I GF +A A + IG+F +++T IAVA +D + R+ ++ G G+ +
Sbjct: 262 VLYYAPTIFTDVGFGVSA-ALLAHIGIGIFNVIVTAIAVAIMDKIDRKKIVNIGAVGMGI 320
Query: 316 SLLLLSAYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL 372
SL ++S K GG +++V AL +Y+ + ++GP+ W+M+ E+FPL RG G S
Sbjct: 321 SLFVMSIGMKFSGGSQTAAIISVIALTVYIAFFSATWGPVMWVMIGEVFPLNIRGLGNSF 380
Query: 373 AVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIES 432
A + N+ +N IV+ F L + G ++F+ + + F ++ F+ + V ET+ SLE+IE+
Sbjct: 381 ASVINWTANMIVSLTFPSLLDFFGTGSLFIGYGILCFASIWFVQKKVFETRNRSLEDIEA 440
Query: 433 KI 434
+
Sbjct: 441 TL 442
|
Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Lactobacillus brevis (taxid: 1580) |
| >sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 142/435 (32%), Positives = 236/435 (54%), Gaps = 25/435 (5%)
Query: 7 PELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT 66
P + NL+A GLV S L+GA LG++ ++DF GR++ ++ AV++ + +
Sbjct: 37 PYMGEPDQLNLNAFTEGLVTSSLLFGAALGAVFGGRMSDFNGRRKNILFLAVIFFISTIG 96
Query: 67 TAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGY 126
+AP + V+++ R + G+ +G A P Y+AE P + RG +++ EL IV G LL +
Sbjct: 97 CTFAPNVTVMIISRFVLGIAVGGASVTVPAYLAEMSPVESRGRMVTQNELMIVSGQLLAF 156
Query: 127 FVGSFQINAVGG----WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYK 182
+ +G WR+M +++ AL + GM +P SPRWL+ KG K
Sbjct: 157 VFNAILGTTMGDNSHVWRFMLVIASLPALFLFFGMIRMPESPRWLV-----SKGR----K 207
Query: 183 EQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFI-IG 241
E A+ L K+R +K + ++++ + K EK+ L V P ++ + IG
Sbjct: 208 EDALRVLKKIR----DEKRAAAELQEIEFAFKKEDQLEKATFKDLSV---PWVRRIVFIG 260
Query: 242 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 301
G+ + QQITG S++YY IL+++GF A A ++ GV ++ T++ + + +G
Sbjct: 261 LGIAIVQQITGVNSIMYYGTEILRNSGFQTEA-ALIGNIANGVISVLATFVGIWLLGRVG 319
Query: 302 RRPLLIGGVCGIALSLLLLSAYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVS 358
RRP+L+ G+ G +LLL+ + +L G P V +S + ++ Q + P++WLM+S
Sbjct: 320 RRPMLMTGLIGTTTALLLIGIFSLVLEGSPALPYVVLSLTVTFLAFQQGAISPVTWLMLS 379
Query: 359 EIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRT 418
EIFPLR RG G+ + V + N V+F F L +G F +F + +VLF+ R
Sbjct: 380 EIFPLRLRGLGMGVTVFCLWMVNFAVSFTFPILLAAIGLSTTFFIFVGLGICSVLFVKRF 439
Query: 419 VPETKGLSLEEIESK 433
+PETKGLSLE++E
Sbjct: 440 LPETKGLSLEQLEEN 454
|
Major myo-inositol uptake transporter. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 229/422 (54%), Gaps = 25/422 (5%)
Query: 17 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL 76
L+ + GLVVS L GA+ GS L + +D GR++ + + ++++ +GAL A++ +G+L
Sbjct: 41 LTTLTEGLVVSMLLLGAIFGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGML 100
Query: 77 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 136
+ R++ GL +G + P+Y++E P++IRGTL ++ L IV GILL Y V ++
Sbjct: 101 IASRVILGLAVGGSTALVPVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYIV-NYLFTPF 159
Query: 137 GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRP 196
WR+M GL+A A+L+ IG+ +P SPRWL+ R GS +E RR
Sbjct: 160 EAWRWMVGLAAVPAVLLLIGIAFMPESPRWLVKR-----GSEEE------------ARRI 202
Query: 197 PGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPS 255
+ IE L +K ++K + L V + ++ +IG GL +FQQ G +
Sbjct: 203 MNITHDPKDIEMELAEMKQGEAEKKE--TTLGVLKAKWIRPMLLIGVGLAIFQQAVGINT 260
Query: 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 315
V+YYA I AG +A A ++ IG+ ++M A+ +D +GR+ LLI G GI L
Sbjct: 261 VIYYAPTIFTKAGLGTSASALG-TMGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITL 319
Query: 316 SLLLLSAYYKILG---GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL 372
SL LS LG + V L +Y+ YQ ++GP+ W+++ E+FP + RG
Sbjct: 320 SLAALSGVLLTLGLSASTAWMTVVFLGVYIVFYQATWGPVVWVLMPELFPSKARGAATGF 379
Query: 373 AVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIES 432
L +N IV+ F + +G +F++F+ I L+ F VPETKG SLEEIE+
Sbjct: 380 TTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVICLLSFFFAFYMVPETKGKSLEEIEA 439
Query: 433 KI 434
+
Sbjct: 440 SL 441
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P0AEP1|GALP_ECOLI Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 139/425 (32%), Positives = 233/425 (54%), Gaps = 21/425 (4%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
F +++ VVS ++GA +G++ ++ LGRK+ L+I A+L+ G+L +A AP +
Sbjct: 47 FQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVE 106
Query: 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 134
VL++ R+L GL +G+A + APLY++E P +IRG++IS+ +L I +GI LG ++ +
Sbjct: 107 VLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGI-LGAYLSDTAFS 165
Query: 135 AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRR 194
G WR+M G+ A+L+ IG++ LP SPRW + + A L +LR
Sbjct: 166 YTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWF---------AAKRRFVDAERVLLRLRD 216
Query: 195 RPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP 254
K +I ++L +S + K +F +A +G L + QQ TG
Sbjct: 217 TSAEAKRELDEIRESLQVKQSGWALFKENSNF--------RRAVFLGVLLQVMQQFTGMN 268
Query: 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 314
++YYA I + AG++ + +V++G+ ++ T+IA+ VD GR+P L G +A
Sbjct: 269 VIMYYAPKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMA 328
Query: 315 LSLLLLSAYYKILGGFP---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS 371
+ +L I P A++ LL+++ + +S GP+ W++ SEI PL+ R GI+
Sbjct: 329 AGMGVLGTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGIT 388
Query: 372 LAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIE 431
+ TN+ +N IV F + LG N F ++AA+ L +L + VPETK +SLE IE
Sbjct: 389 CSTATNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIE 448
Query: 432 SKILK 436
++K
Sbjct: 449 RNLMK 453
|
Uptake of galactose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Escherichia coli (strain K12) (taxid: 83333) |
| >sp|P0AEP2|GALP_ECOL6 Galactose-proton symporter OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=galP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 139/425 (32%), Positives = 233/425 (54%), Gaps = 21/425 (4%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
F +++ VVS ++GA +G++ ++ LGRK+ L+I A+L+ G+L +A AP +
Sbjct: 47 FQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVE 106
Query: 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 134
VL++ R+L GL +G+A + APLY++E P +IRG++IS+ +L I +GI LG ++ +
Sbjct: 107 VLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGI-LGAYLSDTAFS 165
Query: 135 AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRR 194
G WR+M G+ A+L+ IG++ LP SPRW + + A L +LR
Sbjct: 166 YTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWF---------AAKRRFVDAERVLLRLRD 216
Query: 195 RPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP 254
K +I ++L +S + K +F +A +G L + QQ TG
Sbjct: 217 TSAEAKRELDEIRESLQVKQSGWALFKENSNF--------RRAVFLGVLLQVMQQFTGMN 268
Query: 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 314
++YYA I + AG++ + +V++G+ ++ T+IA+ VD GR+P L G +A
Sbjct: 269 VIMYYAPKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMA 328
Query: 315 LSLLLLSAYYKILGGFP---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS 371
+ +L I P A++ LL+++ + +S GP+ W++ SEI PL+ R GI+
Sbjct: 329 AGMGVLGTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGIT 388
Query: 372 LAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIE 431
+ TN+ +N IV F + LG N F ++AA+ L +L + VPETK +SLE IE
Sbjct: 389 CSTATNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIE 448
Query: 432 SKILK 436
++K
Sbjct: 449 RNLMK 453
|
Uptake of galactose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) |
| >sp|Q8VZR6|INT1_ARATH Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 216/400 (54%), Gaps = 28/400 (7%)
Query: 43 IADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETC 102
I D+ GRK+ + A V++A GA+ A AP VL+ GRLL GLG+G+A AP+YIAE
Sbjct: 94 INDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEAS 153
Query: 103 PSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 162
PS++RG L+S L I G L Y V S G WR+M G+S A++ I M +P
Sbjct: 154 PSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSGVPAVIQFILMLFMPE 213
Query: 163 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKS 222
SPRWL ++ K +AI L + ++ED + L ++ +EK
Sbjct: 214 SPRWLFMK---------NRKAEAIQVLAR--------TYDISRLEDEIDHLSAAEEEEKQ 256
Query: 223 EGS---FLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRV 278
+L+VF+ L+ AF+ G GL FQQ TG +V+YY+ I+Q AGF + A +
Sbjct: 257 RKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFL 316
Query: 279 SVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS-AYYKIL------GGFP 331
S+++ T + + +D GR+ L + + G+ +SLL+LS +++K G +
Sbjct: 317 SLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYG 376
Query: 332 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 391
+AV L LY+ + GP+ W + SEI+P + RG ++ N+ SN IV F +
Sbjct: 377 WLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTI 436
Query: 392 KELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIE 431
E G FL+ A IA LAV+F++ VPET+GL+ E+E
Sbjct: 437 AEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVE 476
|
Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 436 | ||||||
| 356542274 | 560 | PREDICTED: D-xylose-proton symporter-lik | 0.990 | 0.771 | 0.837 | 0.0 | |
| 356538970 | 552 | PREDICTED: D-xylose-proton symporter-lik | 0.990 | 0.782 | 0.835 | 0.0 | |
| 388498682 | 563 | unknown [Lotus japonicus] | 0.990 | 0.767 | 0.833 | 0.0 | |
| 110740547 | 558 | D-xylose-H+ symporter - like protein [Ar | 0.990 | 0.774 | 0.840 | 0.0 | |
| 42568650 | 558 | D-xylose-proton symporter-like 3 [Arabid | 0.990 | 0.774 | 0.840 | 0.0 | |
| 297796853 | 559 | hypothetical protein ARALYDRAFT_919128 [ | 0.990 | 0.772 | 0.840 | 0.0 | |
| 449455084 | 585 | PREDICTED: D-xylose-proton symporter-lik | 0.990 | 0.738 | 0.847 | 0.0 | |
| 77999788 | 552 | putative sugar transporter [Nicotiana la | 0.990 | 0.782 | 0.837 | 0.0 | |
| 222424010 | 415 | AT5G59250 [Arabidopsis thaliana] | 0.951 | 1.0 | 0.838 | 0.0 | |
| 255558992 | 505 | sugar transporter, putative [Ricinus com | 0.990 | 0.855 | 0.879 | 0.0 |
| >gi|356542274|ref|XP_003539594.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/432 (83%), Positives = 402/432 (93%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 64
QSPELSG +WFNLSA+QLGLVVSGSLYGALLGS++ ++IADFLGRK++LI AA+LY G
Sbjct: 129 QSPELSGISWFNLSAIQLGLVVSGSLYGALLGSLVAFAIADFLGRKKQLITAALLYLFGG 188
Query: 65 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
+ TAYAP LGVLL GRL+YGLGIGLAMHGAPLYIAETCPSQIRGTL+SLKELFIVLGILL
Sbjct: 189 VITAYAPELGVLLAGRLIYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILL 248
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 184
GYFVGSF I VGGWR+MYG SAP+A+LMG+GMW+LP SPRWLLLRAVQGKGS Q+ KEQ
Sbjct: 249 GYFVGSFLIETVGGWRFMYGFSAPVAVLMGLGMWTLPNSPRWLLLRAVQGKGSFQDLKEQ 308
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
AI++L KLR RPPGDK SE+QIE+TLVSLKS Y D++SEG+FLEVFQGPNLKAFIIGGGL
Sbjct: 309 AIASLSKLRGRPPGDKESEKQIEETLVSLKSVYADQESEGNFLEVFQGPNLKAFIIGGGL 368
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYAGPILQSAGFSAA+DAT+VSVVIG+FKL+MTWIAV KVDDLGRRP
Sbjct: 369 VLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLGRRP 428
Query: 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LLIGGV GIALSL+LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSE+FPLR
Sbjct: 429 LLIGGVSGIALSLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEVFPLR 488
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424
TRG+GISLAVLTNF SNA+VTFAFSPLKE LGAEN+FLLF AIA L++LFI+ +VPETKG
Sbjct: 489 TRGKGISLAVLTNFASNAVVTFAFSPLKEFLGAENLFLLFGAIATLSLLFIIFSVPETKG 548
Query: 425 LSLEEIESKILK 436
+SLE+IESKILK
Sbjct: 549 MSLEDIESKILK 560
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538970|ref|XP_003537973.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/432 (83%), Positives = 400/432 (92%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 64
QSPELSG +WF LSA+QLGLVVSGSLYGALLGS++ ++IADFLGRK++LI AA+LY G
Sbjct: 121 QSPELSGISWFKLSAIQLGLVVSGSLYGALLGSLVAFAIADFLGRKKQLITAALLYLFGG 180
Query: 65 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
+ TAYAP LGVLL GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL+SLKELFIVLGILL
Sbjct: 181 VITAYAPELGVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILL 240
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 184
GYFVGSF I VGGWR+MYG SAP+A+LMG+GM +LP SPRWLLLRAVQGKGS Q+ KE+
Sbjct: 241 GYFVGSFLIETVGGWRFMYGFSAPVAVLMGLGMLTLPNSPRWLLLRAVQGKGSFQDLKEK 300
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
AI +L KLR RPPGDK SERQ+E+TLVSLKS+Y D++SEG+FLEVFQGPNLKAFIIGGGL
Sbjct: 301 AIFSLSKLRGRPPGDKESERQVEETLVSLKSAYADKESEGNFLEVFQGPNLKAFIIGGGL 360
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYAGPILQSAGFSAA+DAT+VSVVIG+FKL+MTWIAV KVDDLGRRP
Sbjct: 361 VLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLGRRP 420
Query: 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LLIGGV GIALSL+LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSE+FPLR
Sbjct: 421 LLIGGVSGIALSLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEVFPLR 480
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424
TRG+GISLAVLTNF SNA+VTFAFSPLKE LGAEN+FLLF AIA L++LFI+ +VPETKG
Sbjct: 481 TRGKGISLAVLTNFASNAVVTFAFSPLKEFLGAENLFLLFGAIAILSLLFIIFSVPETKG 540
Query: 425 LSLEEIESKILK 436
LSLE+IESKILK
Sbjct: 541 LSLEDIESKILK 552
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388498682|gb|AFK37407.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/432 (83%), Positives = 398/432 (92%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 64
QSPELSG TWFNLS++QLGLVVSGSLYGALLGSIL +++ADFLGRKR+LI+AA+LY LG
Sbjct: 132 QSPELSGITWFNLSSIQLGLVVSGSLYGALLGSILAFAVADFLGRKRQLIVAALLYILGG 191
Query: 65 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
TA AP L VLL GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL+SLKELFIVLGIL
Sbjct: 192 AITAAAPELNVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILG 251
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 184
GYFVGSFQI++VGGWR+MYG SAP+A+LMG+GMW+LP SPRWLLL+AVQGKGS Q+ KE+
Sbjct: 252 GYFVGSFQISSVGGWRFMYGFSAPVAVLMGLGMWTLPASPRWLLLKAVQGKGSFQDLKEK 311
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
AI +L KLR RPPGDK SERQIE+TLVSLKS+Y D++SEG+FLEVFQGPNLKAFIIGGGL
Sbjct: 312 AIFSLSKLRGRPPGDKESERQIEETLVSLKSAYKDQESEGNFLEVFQGPNLKAFIIGGGL 371
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYAG ILQSAGFSAA+DAT+VSVVIG+FKL MTW+AV KVDDLGRRP
Sbjct: 372 VLFQQITGQPSVLYYAGSILQSAGFSAASDATKVSVVIGLFKLQMTWVAVLKVDDLGRRP 431
Query: 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LLI GV GI LSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSE FP+R
Sbjct: 432 LLIAGVSGIGLSLGLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSETFPIR 491
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424
TRGRGISLAVLTNF SNA+VTFAFSPLKELLGAEN+FLLF AI+ +A+LF++ +VPETKG
Sbjct: 492 TRGRGISLAVLTNFASNAVVTFAFSPLKELLGAENLFLLFGAISLVALLFVIFSVPETKG 551
Query: 425 LSLEEIESKILK 436
LSLEEIESKILK
Sbjct: 552 LSLEEIESKILK 563
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740547|dbj|BAE98379.1| D-xylose-H+ symporter - like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/432 (84%), Positives = 392/432 (90%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 64
QSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+RELIIAAVLY LG+
Sbjct: 127 QSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGS 186
Query: 65 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
L T AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL
Sbjct: 187 LITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 246
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 184
G+ VGSFQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQGKG LQEYKE+
Sbjct: 247 GFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEK 306
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGPNLKA IGGGL
Sbjct: 307 AMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGL 366
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVAKVDDLGRRP
Sbjct: 367 VLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRP 426
Query: 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSEIFPLR
Sbjct: 427 LLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLR 486
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424
TRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF IA +++LF++ VPETKG
Sbjct: 487 TRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKG 546
Query: 425 LSLEEIESKILK 436
LSLEEIESKILK
Sbjct: 547 LSLEEIESKILK 558
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42568650|ref|NP_200733.2| D-xylose-proton symporter-like 3 [Arabidopsis thaliana] gi|117940085|sp|Q0WWW9.2|XYLL3_ARATH RecName: Full=D-xylose-proton symporter-like 3, chloroplastic; Flags: Precursor gi|9759246|dbj|BAB09770.1| sugar transporter-like protein [Arabidopsis thaliana] gi|51536478|gb|AAU05477.1| At5g59250 [Arabidopsis thaliana] gi|56381949|gb|AAV85693.1| At5g59250 [Arabidopsis thaliana] gi|332009779|gb|AED97162.1| D-xylose-proton symporter-like 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/432 (84%), Positives = 392/432 (90%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 64
QSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+RELIIAAVLY LG+
Sbjct: 127 QSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGS 186
Query: 65 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
L T AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL
Sbjct: 187 LITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 246
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 184
G+ VGSFQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQGKG LQEYKE+
Sbjct: 247 GFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEK 306
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGPNLKA IGGGL
Sbjct: 307 AMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGL 366
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVAKVDDLGRRP
Sbjct: 367 VLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRP 426
Query: 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSEIFPLR
Sbjct: 427 LLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLR 486
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424
TRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF IA +++LF++ VPETKG
Sbjct: 487 TRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKG 546
Query: 425 LSLEEIESKILK 436
LSLEEIESKILK
Sbjct: 547 LSLEEIESKILK 558
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796853|ref|XP_002866311.1| hypothetical protein ARALYDRAFT_919128 [Arabidopsis lyrata subsp. lyrata] gi|297312146|gb|EFH42570.1| hypothetical protein ARALYDRAFT_919128 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/432 (84%), Positives = 392/432 (90%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 64
QSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+RELIIAAVLY LG+
Sbjct: 128 QSPVLSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGS 187
Query: 65 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
L T AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL
Sbjct: 188 LITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 247
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 184
G+ VGSFQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQGKG LQEYKE+
Sbjct: 248 GFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEK 307
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGPNLKA IGGGL
Sbjct: 308 AMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGL 367
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVAKVDDLGRRP
Sbjct: 368 VLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRP 427
Query: 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSEIFPLR
Sbjct: 428 LLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLR 487
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424
TRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF IA +++LF++ VPETKG
Sbjct: 488 TRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKG 547
Query: 425 LSLEEIESKILK 436
LSLEEIESKILK
Sbjct: 548 LSLEEIESKILK 559
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455084|ref|XP_004145283.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Cucumis sativus] gi|449470902|ref|XP_004153144.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/432 (84%), Positives = 402/432 (93%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 64
QSPELSGT+WFNLSAVQLGLVVSGSLYGALLGS+LVY IADFLGR+RELIIAA LYA+G+
Sbjct: 154 QSPELSGTSWFNLSAVQLGLVVSGSLYGALLGSLLVYPIADFLGRRRELIIAAGLYAIGS 213
Query: 65 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
LTTAY+P LG LL GRLLYGLGIGLAMHGAPLYIAETCPS+IRGTL+SLKELFIVLGIL+
Sbjct: 214 LTTAYSPDLGFLLAGRLLYGLGIGLAMHGAPLYIAETCPSKIRGTLVSLKELFIVLGILM 273
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 184
GY GS QINAVGGWRYMYGLSAP+A +MG+GMW LPPSPRWLLLRA QGK Q+ KE+
Sbjct: 274 GYLFGSLQINAVGGWRYMYGLSAPVAFMMGLGMWLLPPSPRWLLLRAAQGKAPSQDSKEE 333
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
AI+AL KLR RPPGDK+SE+QIE+T +SLKS+Y++++SEGS EV QGP+LKAFIIGGGL
Sbjct: 334 AIAALSKLRGRPPGDKVSEKQIEETFLSLKSAYSEQESEGSIWEVLQGPSLKAFIIGGGL 393
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYAGPILQ+AGF+AA DATRVSVVIGVFKL+MTW+AV KVDDLGRRP
Sbjct: 394 VLFQQITGQPSVLYYAGPILQNAGFAAATDATRVSVVIGVFKLLMTWVAVLKVDDLGRRP 453
Query: 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LLIGGV GIALSLLLLSAYYK LGGFP+VAV ALLLYVGCYQISFGPISWLMVSEIFPLR
Sbjct: 454 LLIGGVSGIALSLLLLSAYYKFLGGFPIVAVGALLLYVGCYQISFGPISWLMVSEIFPLR 513
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424
TRG+GISLAVLTNFGSNAIVTFAFSPLKELLGAEN+FLLF AIA L++LF+V VPETKG
Sbjct: 514 TRGKGISLAVLTNFGSNAIVTFAFSPLKELLGAENLFLLFGAIALLSLLFVVLKVPETKG 573
Query: 425 LSLEEIESKILK 436
LSLE+IESKILK
Sbjct: 574 LSLEDIESKILK 585
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|77999788|gb|ABB17074.1| putative sugar transporter [Nicotiana langsdorffii x Nicotiana sanderae] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/432 (83%), Positives = 397/432 (91%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 64
QS ELSGTTW+N SAVQLGLVVSGSLYGAL GSIL Y ADFLGR+RELIIAA+LYA G
Sbjct: 121 QSAELSGTTWYNFSAVQLGLVVSGSLYGALFGSILAYPFADFLGRRRELIIAALLYAAGG 180
Query: 65 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
TAYAPGLG LL+GRL+YGLGIGLAMHGAPLYIAETCP QIRGTL+SLKEL IVLGILL
Sbjct: 181 SLTAYAPGLGALLLGRLVYGLGIGLAMHGAPLYIAETCPPQIRGTLVSLKELAIVLGILL 240
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 184
GYFVGS++IN VGGWRYM+GLSAP+ALLMG+GMWSLPPSPRWLLLRA+Q KG LQEYKE+
Sbjct: 241 GYFVGSYEINVVGGWRYMFGLSAPIALLMGLGMWSLPPSPRWLLLRAIQSKGPLQEYKEK 300
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
A+ AL KLR RP GDK+SE+QIEDT++SLK++Y+DE++EG+FLEVFQGP+LKAFIIGGGL
Sbjct: 301 AMGALSKLRGRPAGDKVSEKQIEDTIISLKTAYSDEEAEGNFLEVFQGPSLKAFIIGGGL 360
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYAG ILQSAGFSAAADA RVSVVIG+FK +MT +AV K DDLGRRP
Sbjct: 361 VLFQQITGQPSVLYYAGSILQSAGFSAAADAARVSVVIGIFKSLMTAVAVLKADDLGRRP 420
Query: 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LLIGGV GIALSL LLSAYYK LG FP VAV+ALLLYVGCYQISFGPISWLMVSEIFPLR
Sbjct: 421 LLIGGVSGIALSLFLLSAYYKFLGSFPFVAVAALLLYVGCYQISFGPISWLMVSEIFPLR 480
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424
TRG+GISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF AIA L++LF+V +VPETKG
Sbjct: 481 TRGKGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGAIALLSLLFVVTSVPETKG 540
Query: 425 LSLEEIESKILK 436
LSLEEIESKILK
Sbjct: 541 LSLEEIESKILK 552
|
Source: Nicotiana langsdorffii x Nicotiana sanderae Species: Nicotiana langsdorffii x Nicotiana sanderae Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222424010|dbj|BAH19966.1| AT5G59250 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/415 (83%), Positives = 378/415 (91%)
Query: 22 LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81
LGLVVSGSLYGALLGSI VY +ADFLGR+RELIIAAVLY LG+L T AP L +LLVGRL
Sbjct: 1 LGLVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGSLITGCAPDLNILLVGRL 60
Query: 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY 141
LYG GIGLAMHGAPLYIAETCPS+IRGTLISLKELFIVLGILLG+ VGSFQI+ VGGWRY
Sbjct: 61 LYGFGIGLAMHGAPLYIAETCPSRIRGTLISLKELFIVLGILLGFSVGSFQIDVVGGWRY 120
Query: 142 MYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKL 201
MYG P+ALLMG+GMWSLP SPRWLLLRAVQGKG LQEYKE+A+ AL KLR RPPGDK+
Sbjct: 121 MYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEKAMLALSKLRGRPPGDKI 180
Query: 202 SERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAG 261
SE+ ++D +S+K++Y DEKS G+FLEVFQGPNLKA IGGGLVLFQQITGQPSVLYYAG
Sbjct: 181 SEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGLVLFQQITGQPSVLYYAG 240
Query: 262 PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 321
ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVAKVDDLGRRPLLIGGV GIALSL LLS
Sbjct: 241 SILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRPLLIGGVSGIALSLFLLS 300
Query: 322 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 381
AYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN
Sbjct: 301 AYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 360
Query: 382 AIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK 436
AIVTFAFSPLKE LGAEN+FLLF IA +++LF++ VPETKGLSLEEIESKILK
Sbjct: 361 AIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKGLSLEEIESKILK 415
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558992|ref|XP_002520519.1| sugar transporter, putative [Ricinus communis] gi|223540361|gb|EEF41932.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/432 (87%), Positives = 408/432 (94%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 64
QSPELSGTTWFNLSA+QLGLVVSGSLYGALLGS+LVY IADFLGR+RELIIAAVLY LG
Sbjct: 74 QSPELSGTTWFNLSAIQLGLVVSGSLYGALLGSLLVYPIADFLGRRRELIIAAVLYMLGG 133
Query: 65 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
L TAYAP LG+LL GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGIL+
Sbjct: 134 LITAYAPSLGILLGGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILM 193
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 184
GYFVGSF+I+AVGGWRYMYGL AP+AL+MG+GM SLPPSPRWLLLRAVQG+ SLQEYKE+
Sbjct: 194 GYFVGSFEISAVGGWRYMYGLGAPIALIMGLGMLSLPPSPRWLLLRAVQGRASLQEYKEK 253
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
A+ AL KLR RP GDK SE+QIEDTLVSLKS+Y++E+SEGS LEVFQGP+LKAFIIGGGL
Sbjct: 254 AVLALSKLRGRPLGDKESEKQIEDTLVSLKSAYSEEESEGSILEVFQGPSLKAFIIGGGL 313
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSV+IG+FKLVMTWIAV KVDDLGRRP
Sbjct: 314 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVIIGLFKLVMTWIAVLKVDDLGRRP 373
Query: 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LLIGGV GIALSL LLSAYYK+LGGFP+VAV+ALLLYVG YQISFGPISWLMVSEIFPLR
Sbjct: 374 LLIGGVGGIALSLFLLSAYYKVLGGFPVVAVAALLLYVGSYQISFGPISWLMVSEIFPLR 433
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424
TRG+GISLAVLTNFGSNAIVTFAFSPLKELLGAEN+FLLF AIA LA+LF + VPETKG
Sbjct: 434 TRGKGISLAVLTNFGSNAIVTFAFSPLKELLGAENLFLLFGAIALLALLFAIVYVPETKG 493
Query: 425 LSLEEIESKILK 436
LSLEEIESKILK
Sbjct: 494 LSLEEIESKILK 505
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 436 | ||||||
| TAIR|locus:2168494 | 558 | AT5G59250 [Arabidopsis thalian | 0.990 | 0.774 | 0.701 | 6e-151 | |
| TAIR|locus:2148201 | 503 | AT5G17010 [Arabidopsis thalian | 0.988 | 0.856 | 0.527 | 1.5e-108 | |
| TAIR|locus:2097780 | 503 | VGT1 "vacuolar glucose transpo | 0.981 | 0.850 | 0.496 | 1.1e-101 | |
| TIGR_CMR|CBU_0347 | 463 | CBU_0347 "d-xylose-proton symp | 0.917 | 0.863 | 0.330 | 9.8e-48 | |
| UNIPROTKB|F1MIV2 | 621 | SLC2A12 "Solute carrier family | 0.612 | 0.429 | 0.333 | 2.5e-41 | |
| UNIPROTKB|F1P4J7 | 561 | SLC2A12 "Uncharacterized prote | 0.626 | 0.486 | 0.314 | 2.8e-41 | |
| UNIPROTKB|Q5J316 | 621 | SLC2A12 "Solute carrier family | 0.612 | 0.429 | 0.326 | 7e-41 | |
| UNIPROTKB|Q8TD20 | 617 | SLC2A12 "Solute carrier family | 0.637 | 0.450 | 0.321 | 1.2e-40 | |
| MGI|MGI:3052471 | 622 | Slc2a12 "solute carrier family | 0.637 | 0.446 | 0.327 | 1.2e-39 | |
| RGD|1310175 | 621 | Slc2a12 "solute carrier family | 0.637 | 0.447 | 0.327 | 1.5e-39 |
| TAIR|locus:2168494 AT5G59250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
Identities = 303/432 (70%), Positives = 324/432 (75%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXX 64
QSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+RELII
Sbjct: 127 QSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGS 186
Query: 65 XXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL
Sbjct: 187 LITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 246
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQ 184
G+ VGSFQI+ VGGWRYMYG P+ALLMG+GM AVQGKG LQEYKE+
Sbjct: 247 GFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGKGQLQEYKEK 306
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGPNLKA IGGGL
Sbjct: 307 AMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNLKALTIGGGL 366
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVAKVDDLGRRP
Sbjct: 367 VLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRP 426
Query: 305 LLIGGVCXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LLIGGV GFPLVAV ALLLYVGCYQISFGPISWLMVSEIFPLR
Sbjct: 427 LLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLR 486
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENXXXXXXXXXXXXXXXXXRTVPETKG 424
TRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN VPETKG
Sbjct: 487 TRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKG 546
Query: 425 LSLEEIESKILK 436
LSLEEIESKILK
Sbjct: 547 LSLEEIESKILK 558
|
|
| TAIR|locus:2148201 AT5G17010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 229/434 (52%), Positives = 279/434 (64%)
Query: 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXX 61
I QSP LSG +W+NLS+V +GLV SGSLYGAL GSI+ ++IAD +GR++ELI+
Sbjct: 73 ISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRKELILAALLYL 132
Query: 62 XXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLG 121
AMH AP+YIAET PS IRG L+SLKE FIVLG
Sbjct: 133 VGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPIRGQLVSLKEFFIVLG 192
Query: 122 ILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEY 181
++ GY +GS +N GWRYMY S PLA++MGIGM +QGKG+++
Sbjct: 193 MVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRWLLLRVIQGKGNVENQ 252
Query: 182 KEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 241
+E AI +L LR D +E Q+ + L L ++ E E +F E+FQG LKA IIG
Sbjct: 253 REAAIKSLCCLRGPAFVDSAAE-QVNEILAEL--TFVGEDKEVTFGELFQGKCLKALIIG 309
Query: 242 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 301
GGLVLFQQITGQPSVLYYA ILQ+AGFSAA DATRVS+++G+ KL+MT +AV +D LG
Sbjct: 310 GGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTGVAVVVIDRLG 369
Query: 302 RRPLLIGGVCXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF 361
RRPLL+GGV P+VAV ALLLYVGCYQ+SFGPI WLM+SEIF
Sbjct: 370 RRPLLLGGVGGMVVSLFLLGSYYLFFSASPVVAVVALLLYVGCYQLSFGPIGWLMISEIF 429
Query: 362 PLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENXXXXXXXXXXXXXXXXXRTVPE 421
PL+ RGRG+SLAVL NFG+NA+VTFAFSPLKELLGA VPE
Sbjct: 430 PLKLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFCGFGVICVLSLVFIFFIVPE 489
Query: 422 TKGLSLEEIESKIL 435
TKGL+LEEIE+K L
Sbjct: 490 TKGLTLEEIEAKCL 503
|
|
| TAIR|locus:2097780 VGT1 "vacuolar glucose transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
Identities = 214/431 (49%), Positives = 271/431 (62%)
Query: 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXX 64
+SP LSG +W++LS+V +G++ SGSLYGAL+GSI+ +S+AD +GR++ELI+
Sbjct: 76 KSPTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVADIIGRRKELILAAFLYLVGA 135
Query: 65 XXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 124
MH AP+YIAET PSQIRG +ISLKE VLG++
Sbjct: 136 IVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQIRGRMISLKEFSTVLGMVG 195
Query: 125 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQ 184
GY +GS I + GWRYMY P ++MG GM A+QG+G+ + ++
Sbjct: 196 GYGIGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASPRWLLLRALQGQGNGENLQQA 255
Query: 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244
AI +L +LR D +E Q+ + L L S E E +F E+F+G LKA I GGL
Sbjct: 256 AIRSLCRLRGSVIADSAAE-QVNEILAEL--SLVGEDKEATFGELFRGKCLKALTIAGGL 312
Query: 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304
VLFQQITGQPSVLYYA ILQ+AGFSAAADATR+S+++G+ KLVMT ++V +D +GRRP
Sbjct: 313 VLFQQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLVMTGVSVIVIDRVGRRP 372
Query: 305 LLIGGVCXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 364
LL+ GV P VAV+ALLLYVGCYQ+SFGPI WLM+SEIFPL+
Sbjct: 373 LLLCGVSGMVISLFLLGSYYMFYKNVPAVAVAALLLYVGCYQLSFGPIGWLMISEIFPLK 432
Query: 365 TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENXXXXXXXXXXXXXXXXXRTVPETKG 424
RGRGISLAVL NFG+NA+VTFAFSPLKELLGA VPETKG
Sbjct: 433 LRGRGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVICVVSLFFIYYIVPETKG 492
Query: 425 LSLEEIESKIL 435
L+LEEIE+K L
Sbjct: 493 LTLEEIEAKCL 503
|
|
| TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 140/424 (33%), Positives = 201/424 (47%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXX 74
F+LS G VVS L GA LG++ +AD++GRKR LII
Sbjct: 49 FHLSPQMNGFVVSAVLIGAFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSIS 108
Query: 75 XXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 134
A + APLYI+E P RG L+SL +L + +GI L Y V +
Sbjct: 109 WLVIGRIIVGIAIGIASYSAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVV-DYYFA 167
Query: 135 AVGGWRYMYGLSA-PLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLR 193
WR M+ P ALL+ +GM + +G ++E+A+ L KLR
Sbjct: 168 RHDAWRSMFAAGVIPAALLL-LGMIVLPYSPRW-----IFSRG----HEEKALWILRKLR 217
Query: 194 RRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 253
P +E+++E SL+ D ++ F ++ + P L I GL +FQQ+TG
Sbjct: 218 GHGPH---AEQELEHIRASLQQQKGDWRT--LFSKIIR-PTL---FIAIGLAVFQQVTGI 268
Query: 254 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL---IGGV 310
+VLYYA IL+ GF A+ A ++ IG +++T I++ +D LGRRPLL +G +
Sbjct: 269 NTVLYYAPTILKMTGFQASQTAILATMGIGAVLVIITIISLPLIDSLGRRPLLFIGVGAM 328
Query: 311 CXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 370
+A +LL+++ + IS GPI WLM SEIFPLR RG G
Sbjct: 329 TVSLLVLSWSFKVHGHMDYMRWIAFGSLLVFISGFSISLGPIMWLMFSEIFPLRVRGLGA 388
Query: 371 SLAVLTNFGSNAIVTFAFSPLKELLGAENXXXXXXXXXXXXXXXXXRTVPETKGLSLEEI 430
S+ TN+ SN +VT F L E LG +VPETKG++LE+I
Sbjct: 389 SIGACTNWASNWLVTITFLTLIEYLGPSGTFFIYFIISVITLIFIYTSVPETKGVTLEQI 448
Query: 431 ESKI 434
E +
Sbjct: 449 EENL 452
|
|
| UNIPROTKB|F1MIV2 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 96/288 (33%), Positives = 134/288 (46%)
Query: 24 LVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXX 83
+VVS L GALL S++ + D GR+ +I+
Sbjct: 85 MVVSSLLIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTLIGGRIAI 144
Query: 84 XXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 143
+ +YIAE P RG L+SL EL IV+GIL Y N GW+YM+
Sbjct: 145 GVFISLSSTATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANISHGWKYMF 204
Query: 144 GLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 203
GL PL +L I M KG ++E A LGKLR +S+
Sbjct: 205 GLVIPLGVLQAIAMYFLPPSPRFLVM-----KG----HEEAASKVLGKLRA------ISD 249
Query: 204 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAG 261
E T++ KSS DE + SF ++F+ N++ I IG LV F QITGQP++L+YA
Sbjct: 250 TTEELTVI--KSSLKDEY-QYSFWDLFRSKDNMRTRIMIGLMLVFFVQITGQPNILFYAS 306
Query: 262 PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IG 308
+L+S GF + A+ S +GV K++ T A VD +G + L IG
Sbjct: 307 TVLKSVGFQSNEAASLASTGVGVVKVISTIPATLLVDQVGSKTFLCIG 354
|
|
| UNIPROTKB|F1P4J7 SLC2A12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
Identities = 93/296 (31%), Positives = 134/296 (45%)
Query: 17 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXX 76
LS + +VVS L+GAL S+ + D GR+ +II
Sbjct: 44 LSCKEQEIVVSSLLFGALFASLTGGFLIDRFGRRFAIIIASSLLVMGSLILLPHESYGIL 103
Query: 77 XXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 136
+ +YIAE P RG L+SL EL IV+GIL Y + ++ +V
Sbjct: 104 IVGRIAIGISISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAY-ISNYAFASV 162
Query: 137 G-GWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRR 195
GW+YM+GL PL L I M ++ E A L +LR
Sbjct: 163 SHGWKYMFGLVIPLGALQAIAMYFLPPSPRFLV---------MKNNDEAARKILERLRET 213
Query: 196 PPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN-LKA-FIIGGGLVLFQQITGQ 253
D E L +KSS DE + SF+++F+ N ++A ++G LV F Q TGQ
Sbjct: 214 --SDATKE------LTVIKSSLKDEH-QYSFVDLFRSKNNMRARMLVGLTLVFFVQTTGQ 264
Query: 254 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IG 308
P++L+YA +L+S GF + A+ S +GV K+V T A VD +G + L IG
Sbjct: 265 PNILFYASTVLKSVGFQSNEAASLASTGVGVVKVVSTVPATVFVDKVGSKTFLCIG 320
|
|
| UNIPROTKB|Q5J316 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 7.0e-41, Sum P(2) = 7.0e-41
Identities = 94/288 (32%), Positives = 131/288 (45%)
Query: 24 LVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXX 83
+VVS L GALL S++ + D GR+ +I+
Sbjct: 85 MVVSSLLIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTLIGGRIAI 144
Query: 84 XXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 143
+ +YIAE P RG L+SL EL IV+GIL Y N GW+YM+
Sbjct: 145 GVFISLSSTATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANISHGWKYMF 204
Query: 144 GLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 203
GL PL +L I M KG ++E A LGKLR +
Sbjct: 205 GLVIPLGVLQAIAMYFLPPSPRFLVM-----KG----HEEAASKVLGKLR--------AV 247
Query: 204 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAG 261
+ L +KSS DE + SF ++F+ N++ I IG LV F QITGQP++L+YA
Sbjct: 248 LDTTEELTVIKSSLKDEY-QYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILFYAS 306
Query: 262 PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IG 308
+L+S GF + A+ S +GV K++ T A VD +G + L IG
Sbjct: 307 TVLKSVGFQSNEAASLASTGVGVVKVISTIPATLLVDQVGSKTFLCIG 354
|
|
| UNIPROTKB|Q8TD20 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 96/299 (32%), Positives = 134/299 (44%)
Query: 13 TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXX 72
T LS + +VVS + GALL S+ + D GR+ +I+
Sbjct: 70 TLLALSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLS 129
Query: 73 XXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 132
+ +YIAE P RG L+SL EL IV+GIL Y
Sbjct: 130 YTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYISNYAF 189
Query: 133 INAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKL 192
N GW+YM+GL PL +L I M +G S LG+L
Sbjct: 190 ANVFHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVMKGQEGAAS---------KVLGRL 240
Query: 193 RRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP-NLKAFI-IGGGLVLFQQI 250
R LS+ E T++ KSS DE + SF ++F+ N++ I IG LV F QI
Sbjct: 241 RA------LSDTTEELTVI--KSSLKDEY-QYSFWDLFRSKDNMRTRIMIGLTLVFFVQI 291
Query: 251 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IG 308
TGQP++L+YA +L+S GF + A+ S +GV K++ T A VD +G + L IG
Sbjct: 292 TGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVISTIPATLLVDHVGSKTFLCIG 350
|
|
| MGI|MGI:3052471 Slc2a12 "solute carrier family 2 (facilitated glucose transporter), member 12" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 98/299 (32%), Positives = 133/299 (44%)
Query: 13 TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXX 72
T L+ + +VVS L GA L S+ + D GR+ +I+
Sbjct: 74 TLLALTCHEQEMVVSSLLIGAFLASLTGGVLIDRYGRRLAIILSSCLLGLGSLVLIMSLS 133
Query: 73 XXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 132
+ +YIAE P RG L+SL EL IV GIL Y
Sbjct: 134 YTLLIMGRVAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVTGILFAYISNYAF 193
Query: 133 INAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKL 192
N GW+YM+GL PL +L I M KG QE E A L KL
Sbjct: 194 ANISNGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KG--QE--ESAGKVLRKL 244
Query: 193 RRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP-NLKA-FIIGGGLVLFQQI 250
R +S+ E TL+ KSS DE + SF ++F+ N++ +IG LV F Q
Sbjct: 245 R------VISDTTEELTLI--KSSLKDEY-QYSFWDLFRSKDNMRTRILIGLTLVFFVQT 295
Query: 251 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IG 308
TGQP++L+YA +L+S GF + A+ S +GV K+V T A VD +G + L IG
Sbjct: 296 TGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVVSTIPATLLVDHIGSKTFLCIG 354
|
|
| RGD|1310175 Slc2a12 "solute carrier family 2 (facilitated glucose transporter), member 12" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 98/299 (32%), Positives = 133/299 (44%)
Query: 13 TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXX 72
T L+ + +VVS L GA L S+ + D GR+ +I+
Sbjct: 74 TLLALTCHEQEMVVSSLLIGAFLASLTGGVLIDRYGRRLTIILSSCLLGLGSLVLILSLS 133
Query: 73 XXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 132
+ +YIAE P RG L+SL EL IV GIL Y
Sbjct: 134 YTLLITGRVAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVTGILFAYISNYAF 193
Query: 133 INAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKL 192
N GW+YM+GL PL +L I M KG QE E A L KL
Sbjct: 194 ANISNGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KG--QE--EAAGKVLRKL 244
Query: 193 RRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP-NLKA-FIIGGGLVLFQQI 250
R +S+ E TL+ KSS DE + SF ++F+ N++ +IG LV F Q
Sbjct: 245 R------VISDTAEELTLI--KSSLKDEY-QYSFWDLFRSKDNMRTRILIGLTLVFFVQT 295
Query: 251 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IG 308
TGQP++L+YA +L+S GF + A+ S +GV K+V T A VD +G + L IG
Sbjct: 296 TGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVVSTIPATLLVDHVGSKTFLCIG 354
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WWW9 | XYLL3_ARATH | No assigned EC number | 0.8402 | 0.9908 | 0.7741 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3610 | 0.9105 | 0.8687 | yes | no |
| O52733 | XYLT_LACBR | No assigned EC number | 0.3341 | 0.9197 | 0.8774 | yes | no |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3270 | 0.9266 | 0.8706 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | AT5G59250 | sugar transporter family protein; sugar transporter family protein; FUNCTIONS IN- carbohydrate transmembrane transporter activity, sugar-hydrogen symporter activity; INVOLVED IN- transport, transmembrane transport; LOCATED IN- chloroplast, membrane, chloroplast envelope; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Sugar transporter, conserved site (InterPro-IPR005829), General substrate transporter (InterPro-IPR005828), Sugar/inositol transporter (InterPro-IPR003663), Major facilitator superfamily, general substrate transporter (In [...] (558 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT2G42770 | peroxisomal membrane 22 kDa family protein; peroxisomal membrane 22 kDa family protein; FUNCTIO [...] (232 aa) | • | • | 0.844 | ||||||
 | CSP41A | CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding; Encod [...] (406 aa) | • | 0.815 | |||||||
 | CRB | CRB (CHLOROPLAST RNA BINDING); binding / catalytic/ coenzyme binding; Encodes CHLOROPLAST RNA B [...] (378 aa) | • | 0.808 | |||||||
 | AT1G75690 | chaperone protein dnaJ-related; chaperone protein dnaJ-related; FUNCTIONS IN- unfolded protein [...] (154 aa) | • | 0.786 | |||||||
 | AT3G48420 | haloacid dehalogenase-like hydrolase family protein; haloacid dehalogenase-like hydrolase famil [...] (319 aa) | • | 0.784 | |||||||
 | AT1G74730 | unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (198 aa) | • | 0.784 | |||||||
 | AT2G26900 | bile acid-sodium symporter family protein; bile acid-sodium symporter family protein; FUNCTIONS [...] (409 aa) | • | • | 0.777 | ||||||
 | AT3G10060 | immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative; immunophilin, [...] (230 aa) | • | 0.760 | |||||||
 | APE2 | APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2); antiporter/ triose-phosphate transmembra [...] (415 aa) | • | • | 0.756 | ||||||
 | CYP38 | CYP38 (cyclophilin 38); peptidyl-prolyl cis-trans isomerase; Encodes a chloroplast cyclophilin [...] (437 aa) | • | 0.754 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 436 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-78 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 4e-76 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 8e-64 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-21 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-17 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-16 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-13 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 1e-12 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 5e-12 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 2e-10 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 4e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-09 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-08 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 7e-08 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 1e-07 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 6e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-05 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 1e-04 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 2e-04 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 0.001 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.001 | |
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 0.002 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 249 bits (639), Expect = 2e-78
Identities = 148/423 (34%), Positives = 239/423 (56%), Gaps = 27/423 (6%)
Query: 17 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG--LG 74
S V GL+VS G L+GS+ + D GRK+ L+I VL+ +GAL +A G
Sbjct: 43 ASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFY 102
Query: 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF--Q 132
+L+VGR++ GLG+G P+YI+E P ++RG L SL +L I GIL+ +G +
Sbjct: 103 MLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNK 162
Query: 133 INAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKL 192
+ GWR GL A+L+ IG+ LP SPRWL+L+ E+A + L KL
Sbjct: 163 YSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGK---------LEEARAVLAKL 213
Query: 193 RRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQIT 251
R ++ +D+L + E + S+LE+F+G ++ ++G L +FQQ+T
Sbjct: 214 -RGVSDVDQEIQEEKDSLE-----RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLT 267
Query: 252 GQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 311
G ++ YY+ I ++ G S D+ V++++GV V T+IA+ VD GRRPLL+ G
Sbjct: 268 GINAIFYYSPTIFETLGLS---DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAA 324
Query: 312 GIALSLLLLSAYYKILGGFP---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 368
G+A+ L+L + +VA+ +LL++ + + +GP+ W++VSE+FPL R +
Sbjct: 325 GMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPK 384
Query: 369 GISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLE 428
+++A N+ +N ++ F F + +G +FL+FA + L +LF+ VPETKG +LE
Sbjct: 385 AMAIATAANWLANFLIGFLFPIITGAIGG-YVFLVFAGLLVLFILFVFFFVPETKGRTLE 443
Query: 429 EIE 431
EI+
Sbjct: 444 EID 446
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 244 bits (626), Expect = 4e-76
Identities = 150/432 (34%), Positives = 236/432 (54%), Gaps = 30/432 (6%)
Query: 14 WFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-- 71
+ S+ GLVVS L G +G++ ++D GRK+ L+I A+L+ +GA+ A
Sbjct: 65 SDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA 124
Query: 72 -GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 130
+ +L+VGR+L G+G+G+A P+Y++E P +RG L SL +L I GIL+ Y GS
Sbjct: 125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGS 184
Query: 131 --FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISA 188
+N GWR GL A L+ +G++ LP SPRWL+ +G+ E+A +
Sbjct: 185 GKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVG---KGR------VEEARKS 235
Query: 189 LGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK-----SEGSFLEVFQGPNLKAFIIGGG 243
L +LR G ++++ D L + + EK S GS + + F+ G
Sbjct: 236 LARLR----GTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFL-GVV 290
Query: 244 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR 303
L FQQ TG +++YY+ I ++AG S A VS+++G T++A+ VD GRR
Sbjct: 291 LQWFQQFTGINAIMYYSPTIFENAGVSTD-HAFLVSIIVGAVNFAFTFVAIFLVDRFGRR 349
Query: 304 PLLIGGVCGIALSLLLLSAYYKILGGFPL-----VAVSALLLYVGCYQISFGPISWLMVS 358
PLL+ G G+A+ L +L VA+ +LL++ + + +GP+ W++VS
Sbjct: 350 PLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVS 409
Query: 359 EIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRT 418
EIFPL R +GIS+AV N+ +N IV F F + E +G +F+ F + L ++F+
Sbjct: 410 EIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFF 469
Query: 419 VPETKGLSLEEI 430
+PETKG +LEEI
Sbjct: 470 LPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 8e-64
Identities = 142/447 (31%), Positives = 233/447 (52%), Gaps = 55/447 (12%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
+ + LG V+ +L G ++G L ++ GR+ L IAAVL+ + AL +A+ P G
Sbjct: 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAW-PEFG 108
Query: 75 VLLVG-------------RLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG 121
+G R++ G+G+GLA +P+YIAE P+ IRG L+S + I+ G
Sbjct: 109 FTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG 168
Query: 122 ILLGYFVGSFQINAVG-------GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQG 174
L+ YFV F + GWRYM+ A ALL + ++ +P +PR+L+ R Q
Sbjct: 169 QLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQ- 227
Query: 175 KGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 234
EQA L K+ G+ L+ + +++ +K S + G L +F
Sbjct: 228 --------EQAEGILRKIM----GNTLATQALQE----IKHSLDHGRKTGGKLLMF---G 268
Query: 235 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRV-SVVIGVFKLVMTWIA 293
+ +IG L +FQQ G VLYYA I ++ G A+ D + ++++GV L T +A
Sbjct: 269 VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLG--ASTDIALLQTIIVGVINLTFTVLA 326
Query: 294 VAKVDDLGRRPLLIGGVCGIALSLLLLS--AYYKILGGFPLVAVSALLLYVGCYQISFGP 351
+ VD GR+PL I G G+A+ + L Y + G +VA+ ++L YV + +S+GP
Sbjct: 327 IMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG---IVALLSMLFYVAAFAMSWGP 383
Query: 352 ISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF------LLFA 405
+ W+++SEIFP RG+ +++AV + +N V++ F + + F ++
Sbjct: 384 VCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG 443
Query: 406 AIAFLAVLFIVRTVPETKGLSLEEIES 432
+ LA LF+ + VPETKG +LEE+E+
Sbjct: 444 CMGVLAALFMWKFVPETKGKTLEEMEA 470
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 2e-21
Identities = 114/436 (26%), Positives = 190/436 (43%), Gaps = 67/436 (15%)
Query: 13 TWFNL---SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY 69
T ++L A ++ L S G LLGS + ++D GRK+ L+++ ++ A+ + TA+
Sbjct: 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF 176
Query: 70 APGLGVLLVGRLLYGLGI-GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV 128
+P V LV RLL G+GI G+ + L E P + R + +L ++F LG++L V
Sbjct: 177 SPNYTVFLVFRLLVGMGIGGIWVQAVVLN-TEFLPKKQRAIVGTLIQVFFSLGLVLLPLV 235
Query: 129 GSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISA 188
F + WR++ + L + W +P SPRWL+ QG+ E+A+
Sbjct: 236 AYF----IPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLIS---QGRI------EEALKI 282
Query: 189 LGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA---------FI 239
L ++ + G KL E +SL+ + K + SFL++F+ PNL+ F
Sbjct: 283 LQRIAKI-NGKKLP---AEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT 338
Query: 240 IG---GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAK 296
GLVL G G I S + + +T +
Sbjct: 339 TAFSYYGLVLDLGNLG--------GNIYLDLFISGLVE------LPAKL---ITLLL--- 378
Query: 297 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLM 356
+D LGRR + + ++LLLL + + + +L +F + +L
Sbjct: 379 IDRLGRRYTMAASLLLAGVALLLL---LFVPVDLYFLRTALAVLGKFGITSAFQMV-YLY 434
Query: 357 VSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 415
+E++P R G+ + + GS SP LG + +FL LA+L
Sbjct: 435 TAELYPTVVRNLGVGVCSTMARVGS------IISPFLVYLGEKWLFLPLVLFGGLALLAG 488
Query: 416 VRTV--PETKGLSLEE 429
+ T+ PETKG+ L E
Sbjct: 489 ILTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 83/367 (22%), Positives = 138/367 (37%), Gaps = 40/367 (10%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
+ L VQLG + S L G G++ +AD +GR+R L+ + +L+++ L A A +
Sbjct: 47 WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVT 106
Query: 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 134
LL+ R L GLG+G M ++E P + RGT + L +G +G F+ + I
Sbjct: 107 QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI- 165
Query: 135 AVGGWRYMYGLSAPLALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLR 193
V GWR ++ + LL+ + + LP S +L+ + + + + A
Sbjct: 166 PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK--RPETVRRIVNAIAPQM----- 218
Query: 194 RRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 253
+ L E T F +FQG + ++ L +
Sbjct: 219 QAEAQSALPE-----------QKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVG-- 265
Query: 254 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVM---TWIAVAKVDDLGRRPLLIGGV 310
+Y+ L + + +F + I D LG R
Sbjct: 266 ---VYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVT----- 317
Query: 311 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQI-SFGPISWLMVS--EIFPLRTRG 367
LLLL A + +L G L + + LLL G S L +P R
Sbjct: 318 ----ALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRA 373
Query: 368 RGISLAV 374
G+ A+
Sbjct: 374 TGVGWAI 380
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 60/155 (38%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
LSA Q GL+VS G LGS+L ++D GR+R L++ +L+ALG+L A+A L
Sbjct: 29 LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLW 88
Query: 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 134
+LLVGR L GLG G A IAE P + RG + L LG LLG +G +
Sbjct: 89 LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL-LA 147
Query: 135 AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL 169
GWR+++ + A L LL+ + + L L L
Sbjct: 148 ESLGWRWLFLILAILGLLLALLLLFLLRLLLLLAL 182
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 4e-13
Identities = 80/369 (21%), Positives = 133/369 (36%), Gaps = 51/369 (13%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
+S ++GL+++ G L L ++D GR+R L+I +L+ALG L +A L
Sbjct: 27 LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLW 86
Query: 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 134
+LLV R+L GLG G A IA+ P + RG + L LG LG +G +
Sbjct: 87 LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL-LA 145
Query: 135 AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRR 194
++ GWR + + A LALL + L
Sbjct: 146 SLFGWRAAFLILAILALLAAV--------------------------------LAALLLP 173
Query: 195 RPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP 254
RPP + + E+ L ++ + + L
Sbjct: 174 RPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLL--------------ALLLFGFAFF 219
Query: 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 314
++L Y + G SA + + + + + D LGRR L+ + +
Sbjct: 220 ALLTYLPLYQEVLGLSALLAGLLLGLAGLLG-AIGRLLLGRLSDRLGRRRRLLLALLLLI 278
Query: 315 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 374
L+ L L+ + + + LL +G P +VS++ P RG L
Sbjct: 279 LAALGLAL---LSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYN 335
Query: 375 LTNFGSNAI 383
A+
Sbjct: 336 TAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 10/158 (6%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
F L Q+G S + G L G++L +AD +GRKR LI++ L+ L +L TA A
Sbjct: 45 FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFP 104
Query: 75 VLLVGRLLYGLGIGLAMHGAPLYIA---ETCPSQIRGTLISLKELFIVLGILLGYFVGSF 131
LLV RLL G+G+G A+ P IA E ++RGT +SL + G L +G
Sbjct: 105 SLLVARLLTGVGLGGAL---PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL 161
Query: 132 QINAVGGWRYMY--GLSAPLALLMGIGMWSLPPSPRWL 167
WR+++ G PL L+ + W LP S +
Sbjct: 162 AAGD-AAWRHIFYVGGVGPLLLVPLLMRW-LPESRAFA 197
|
Length = 406 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-12
Identities = 96/396 (24%), Positives = 150/396 (37%), Gaps = 71/396 (17%)
Query: 35 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLG 86
LG+I+ D +GRK+ L+I ++ +G L P +LL+ RL+ G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 87 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GW 139
+G GA LY+AE P RG S +++ +G+LL +G GW
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 140 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGD 199
R + +SA L L IG++ LRR
Sbjct: 170 RIPFLVSAVLVL---IGLY---------------------------------LRRN---- 189
Query: 200 KLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYY 259
+E+T V K+ +K G E + K F++G GLV+ T Y
Sbjct: 190 ------LEETPVFEKAQEKHKKKRGPIAETLTK-HRKPFLLGLGLVIATTTTFYLITTYL 242
Query: 260 AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP-LLIGGVCGIALSLL 318
+ Q+ G SA A V ++ + + ++ A D +GRRP L+I V L++
Sbjct: 243 PTYLTQTLGLSAN-SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVP 301
Query: 319 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL----AV 374
LL A + G + +L + GP+ + E+FP R G SL A
Sbjct: 302 LLMAL--LDSGSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLAYNLAG 358
Query: 375 LTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFL 410
G + A + A +L A+ L
Sbjct: 359 AIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIGL 394
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 108/464 (23%), Positives = 168/464 (36%), Gaps = 79/464 (17%)
Query: 23 GLVVSGSLYGALLGSILVYSIADFLGRKR----ELIIAAVLYALGALTTAYAPG--LGVL 76
V + G L G + +AD LGRKR ELII + L+ +P + L
Sbjct: 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATL 118
Query: 77 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV-------- 128
R G+GIG + + +E + RG +++ GIL G V
Sbjct: 119 CFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGF 178
Query: 129 --------------GSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL---RA 171
GS WR + G A ALL ++P +PR+
Sbjct: 179 KHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDV 238
Query: 172 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ 231
Q + + I A D++ E+ V S F F+
Sbjct: 239 EQAASDMSAVLQVKIEA--------EPDEV-EKASTAVEVPKASWS------DFFTHFFK 283
Query: 232 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADAT---RVSVVIGVFKLV 288
+ K ++G F V IL + G+S A V L+
Sbjct: 284 WRHGKH-LLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLI 342
Query: 289 MT--------WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLL 340
+ W+ V VD +GR+P+ + G + + +L Y L +A+ L
Sbjct: 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQ 402
Query: 341 YVGCYQISFGP--ISWLMVSEIFPLRTRG--RGISLAVLTNFGSNAIVTFAFSPLKE--- 393
+ +FGP ++++ E+FP R R GIS A G+ I F F L +
Sbjct: 403 FFA----NFGPNATTFIVPGEVFPTRYRSTAHGIS-AASGKAGA-IIGQFGFLYLAQHGD 456
Query: 394 -------LLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 430
+ ++ +FA FL +LF + +PETKG SLEE+
Sbjct: 457 PTKGYPTGIWMGHVLEIFALFMFLGILFTL-LIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 93/406 (22%), Positives = 158/406 (38%), Gaps = 69/406 (16%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
+S G +++ G LG+ L+ + L R+R L+ L+ + L +A AP
Sbjct: 43 LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFA 102
Query: 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 134
VLL+ R L GL G+ A A P RG ++L + L +LG +G+F +
Sbjct: 103 VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF-LG 161
Query: 135 AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRR 194
+ GWR + A LALL + + W LL + GSL + L +
Sbjct: 162 QLFGWRATFLAIAVLALLALLLL--------WKLLPPSEISGSLPGPLRTLLRLLRRPG- 212
Query: 195 RPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP 254
++ G L F +TG
Sbjct: 213 --------------------------------------------VLLGLLATFLFMTGHF 228
Query: 255 SVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 313
++ Y P L+S AGFS +A + V + G+ + + ++ D G R LI + +
Sbjct: 229 ALYTYIRPFLESVAGFSVSA-VSLVLLAFGIAGFIGNLL-GGRLADRGPRRALIAALLLL 286
Query: 314 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA 373
AL+LL L+ G P +A++ L L + +F P + + + L ++ +
Sbjct: 287 ALALLALT----FTGASPALALALLFL----WGFAFSPALQGLQTRLARLAPDAADLAGS 338
Query: 374 VLT---NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIV 416
+ N G A+ + + LG + AA+ LA+L +
Sbjct: 339 LNVAAFNLG-IALGAALGGLVLDALGYAATGWVGAALLLLALLLAL 383
|
Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 5/179 (2%)
Query: 239 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD 298
++ L F G +L Y LQ +AA+A + + G+ ++ + D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 299 DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVS 358
LGRR LL+ +A LLL A L + + + P + S
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF-----PALLTLAS 291
Query: 359 EIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR 417
E+ P RG L A+ L + G +FL+ AA+A LA L ++
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
F L+ V ++S +L G+++ D GR+ ++ + VL++ G L +APG
Sbjct: 42 FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYI 101
Query: 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 134
+ + RL+ G+G+G + Y+ E+ P +R ++ G +G V + +
Sbjct: 102 TMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASG----LLISGYAVGAVVAAQVYS 157
Query: 135 AVG-----GWRYMYGLSAPLALLMGIGMWSLPPSPRW 166
V GWR ++ +S + ++P + W
Sbjct: 158 LVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDW 194
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-08
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Query: 23 GLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82
GL+++G G L+ S L + D GRK L++ ++ L A + + VL++ R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 142
G G A+ IA+ P + RG + L I LG LLG +G + GWR
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGV-LAQFLGWRAP 119
Query: 143 YGLSAPLALLMGIGMWSLPP 162
+ A LAL I + L P
Sbjct: 120 FLFLAILALAAFILLAFLLP 139
|
Length = 141 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 7e-08
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 10 SGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY 69
SG V LG++V +G L AD LGRK+ L+I + A +++
Sbjct: 202 SGKGMLG-LIVYLGMMVGAFFWGGL---------ADKLGRKQCLLICLSVNGFFAFFSSF 251
Query: 70 APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG-------- 121
G G L RLL G GIG A+ Y AE + RG +S +F ++G
Sbjct: 252 VQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311
Query: 122 -ILLGYFVGSFQINAV---GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLL 168
++ ++ SFQ+ + WR + A + + +P SPR+ L
Sbjct: 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL 362
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
LSA Q G V S +G ++G + D G ++ L + V++ + A+A
Sbjct: 24 LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV 83
Query: 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG-ILLGYFVGSFQI 133
L + R+L G G L +A P+ R T +S+ LG I+ G VG I
Sbjct: 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI 143
Query: 134 NAVGGWRYMYGLSAPLALLMGI 155
+ W++ + + L ++ G+
Sbjct: 144 HF--SWQWAFIIEGVLGIIWGV 163
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
F L+ VQ ++S + G +L+ ++ D GR+ ++I+ VL+++G L +APG
Sbjct: 50 FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYW 109
Query: 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR----GTLISLKELFIVLGILLGYFVGS 130
L + RL+ G+G+ + Y+ E+ P +R G LIS +G ++ V S
Sbjct: 110 TLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLIS----GFSIGAVVAAQVYS 165
Query: 131 FQINAVGGWRYMY 143
+ V GWR ++
Sbjct: 166 L-VVPVWGWRALF 177
|
Length = 496 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRE-LIIAAVLYALGALTTAYAPGL 73
LSA + GL++S G +LG++L ++D LGR+R L+I +L ALG L A AP L
Sbjct: 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265
Query: 74 GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI 133
+LLV LL G G+G A +E P + RGT L F LG LG + +
Sbjct: 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL-L 324
Query: 134 NAVGGWRYMYGLSAPLALLMGIGMWSLP 161
GG+ ++ + A LALL + + LP
Sbjct: 325 LDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 108/420 (25%), Positives = 169/420 (40%), Gaps = 92/420 (21%)
Query: 35 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV--------LLVGRLLYGLG 86
+G L IAD GRK+ ++I+ + G+L A PG LL+ RL GL
Sbjct: 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLS 137
Query: 87 IGLAMHGAPLYIAETCPSQIRG--------TLISLKELFIVLGILLGYFVGSFQINAVGG 138
+G + Y++E +G TLI + L +++ ++L + ++ G
Sbjct: 138 VGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELRE-WG 196
Query: 139 WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPG 198
WR + L A LA++ L LR L E +Q AL + G
Sbjct: 197 WRIPFALGAVLAVVA-------------LWLRR-----QLDETSQQETRAL-----KEAG 233
Query: 199 DKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLY 258
SLK + + ++ F+ V F G L + T Y
Sbjct: 234 -------------SLKGLWRNRRA---FIMVL------GFTAAGSLCFYTFTT------Y 265
Query: 259 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR-PLLIGGVCGIALSL 317
++ +AG A + ++ + VF L+ I A D +GRR +L G ++
Sbjct: 266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIG-ALSDKIGRRTSMLCFGSLAALFTV 324
Query: 318 LLLSAYYKI---LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP--LRTRGRGISL 372
+LSA + F LV + LL V Y IS ++ +E+FP +R G G+S
Sbjct: 325 PILSALQNVSSPYAAFGLVMCA--LLIVSFYT----SISGILKAEMFPAQVRALGVGLSY 378
Query: 373 AVLTN-FGSNAIVTFAFSPLKELLGAENIFL----LFAAIAFLAVLFIVRTVPETKGLSL 427
AV FG +A + LK +G E F L A +AFL L + R + KG+ L
Sbjct: 379 AVANALFGGSA--EYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLMLHR---KGKGMRL 432
|
Length = 432 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL- 73
F+L+ + L+ G + S+ + LG K +++ +LYA+GA A
Sbjct: 43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102
Query: 74 --GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 131
G LV + GIGL A Y+ + ++L + F LG +LG +GS
Sbjct: 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSS 162
Query: 132 QI 133
I
Sbjct: 163 LI 164
|
Length = 422 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 35 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG---LGVL-----LVGRLLYGLG 86
LG+I++ + D +GR++ LI+ + A G L A+ PG +G+ L+GRLL G
Sbjct: 71 LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFS 130
Query: 87 IGLAMHGAPLYIAETCPSQIRGTLISL----KELFIVLGILLGYFVGSF----QINAVGG 138
G+ + G +Y+AE +G S +++ +V LLGY + + Q+ G
Sbjct: 131 AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAE-WG 189
Query: 139 WR 140
WR
Sbjct: 190 WR 191
|
Length = 434 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 4/180 (2%)
Query: 17 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL 76
L+ ++ + + + G G L +AD GRK ++ + V Y++G + A G+ +L
Sbjct: 50 LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109
Query: 77 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLIS-LKELFIVLGILLGYFVGSFQINA 135
+ R + G+G+ A Y E+ P ++ + L F + I+ YF+ SF
Sbjct: 110 TLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA--E 167
Query: 136 VGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR-AVQGKGSLQEYKEQAISALGKLRR 194
GWR + + LL+ P S W + + +GK S + ++S G R
Sbjct: 168 AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNR 227
|
Length = 426 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
F S GL++S YG ++ I V +A K + I L ++ ++ +A G G
Sbjct: 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130
Query: 75 VLLV--GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 132
+ LV R++ GL G I + P + R L+ + G LG F+
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM----STSGFQLGTFI---- 182
Query: 133 INAVGGWRYMYGLSAP 148
+ GW P
Sbjct: 183 FLPISGWLCESWGGWP 198
|
[Transport and binding proteins, Anions]. Length = 465 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 436 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.98 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.98 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.98 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.98 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.97 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.93 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.92 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.91 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.9 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.9 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.89 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.88 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.88 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.87 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.87 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.86 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.84 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.82 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.81 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.79 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.74 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.71 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.69 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.67 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.65 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.61 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.6 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.59 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.59 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.56 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.55 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.53 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.53 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.52 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.51 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.51 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.5 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.5 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.49 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.49 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.49 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.49 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.48 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.48 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.48 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.47 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.47 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.46 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.46 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.45 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.45 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.44 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.43 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.43 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.43 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.42 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.42 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.42 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.42 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.42 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.42 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.41 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.41 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.41 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.41 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.4 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.4 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.4 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.4 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.4 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.39 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.39 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.37 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.37 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.36 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.35 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.35 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.35 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.34 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.34 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.34 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.33 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.33 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.32 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.31 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.31 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.31 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.31 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.3 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.29 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.29 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.29 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.28 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.27 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.27 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.27 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.27 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.25 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.22 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.21 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.2 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.19 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.19 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.17 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.17 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.16 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.16 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.16 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.15 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.15 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.14 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.14 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.12 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.12 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.11 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.11 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.1 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.1 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.1 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.07 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.05 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.04 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.03 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.03 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.02 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.02 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.02 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.01 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.01 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.01 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.94 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.93 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.93 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.92 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.89 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.88 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.86 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.85 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.83 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.83 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.82 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.82 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.8 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.8 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.75 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.75 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.74 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.74 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.72 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.71 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.66 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.65 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.6 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.59 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.58 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.58 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.57 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.51 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.49 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.38 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.32 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.27 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.27 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.26 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.25 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.22 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.22 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.18 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.99 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.83 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.79 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.73 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.68 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.65 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.35 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.33 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.29 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.22 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.07 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.07 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.8 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.76 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.75 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.29 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.0 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.95 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.81 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.79 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.71 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.41 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 94.95 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 93.95 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 93.76 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.55 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 90.63 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 89.96 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 87.71 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 86.28 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 86.23 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 84.4 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 82.18 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 81.5 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 80.71 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=323.88 Aligned_cols=402 Identities=32% Similarity=0.544 Sum_probs=345.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHhhhhhhhhhhhhhH
Q 013779 21 QLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY---APGLGVLLVGRLLYGLGIGLAMHGAPLY 97 (436)
Q Consensus 21 ~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 97 (436)
..+.+.+++.+|.++|++..|+++||+|||..+.++.++..++.+++.+ .+++..++++|++.|+..|.......-+
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmy 140 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMY 140 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3577788999999999999999999999999999998888888777665 4689999999999999999999999999
Q ss_pred hhhcCcccchhhHHHHHHHHHHHHHHHHHHHhh-ccccccccchHHHhhhhHHHHHHHHHHhcCCCChHHHHHHhhcCcC
Q 013779 98 IAETCPSQIRGTLISLKELFIVLGILLGYFVGS-FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKG 176 (436)
Q Consensus 98 i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~ 176 (436)
+.|..|++.||......+.+..+|..++..++. .+......|++.+.+..+++++..+...++||||||+..+
T Consensus 141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~------ 214 (485)
T KOG0569|consen 141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIK------ 214 (485)
T ss_pred HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH------
Confidence 999999999999999999999999999977764 3444444799999999999999999999999999999975
Q ss_pred ccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchh-HHHHHHHHHHHHHHhChhh
Q 013779 177 SLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPS 255 (436)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 255 (436)
+++.++|++.++.+++.+++++..+.+.++.. +++..++++.+++++++++..| ...+.+.+....++.+.+.
T Consensus 215 --k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~----~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~a 288 (485)
T KOG0569|consen 215 --KGDEEEARKALKFYRGKEDVEAEIEEMLREIE----EEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINA 288 (485)
T ss_pred --cCCHHHHHHHHHHHhCCCcchhHHHHHHHHHH----HhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcce
Confidence 67889999999999988765544433332222 2222334667899999998776 4666777888889999999
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCC-c---
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF-P--- 331 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 331 (436)
+.+|...++++.|++. .++.+.....+...++.++++.++.||.|||++++.+..++.+..+++.......+.. .
T Consensus 289 i~~Yst~i~~~aG~~~-~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (485)
T KOG0569|consen 289 IFFYSTSIFKTAGFTP-EEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLS 367 (485)
T ss_pred eHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999987 7888999999999999999999999999999999999999988888877665543333 2
Q ss_pred hHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHH
Q 013779 332 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLA 411 (436)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 411 (436)
+..+...+.+...++.+.+|+.+-+.+|++|++.|+.+.++...+.++..++-...+.++.+..|. ..|+.+.+.+++.
T Consensus 368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~ 446 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIF 446 (485)
T ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 234566777778888999999999999999999999999999999999999999999999999997 8888999999999
Q ss_pred HhheeEecccCCCCCHHHHHhhhhC
Q 013779 412 VLFIVRTVPETKGLSLEEIESKILK 436 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (436)
.+..++.+||||+|+.+|+.++.+|
T Consensus 447 ~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 447 LIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHHHHhCcccCCCCHHHHHHHHHh
Confidence 9999999999999999998877653
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=329.11 Aligned_cols=405 Identities=20% Similarity=0.231 Sum_probs=300.7
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+++++|.+.++ +|++..+.+++.+++.++.+++++++|+++||+|||+++++++++.+++.++++++++++.++++|+
T Consensus 186 is~ilp~i~~~--~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~ 263 (742)
T TIGR01299 186 VGFVLPSAEKD--LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRL 263 (742)
T ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45678888888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccc------------cccchHHHhhhhHH
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA------------VGGWRYMYGLSAPL 149 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~------------~~~w~~~f~~~~~~ 149 (436)
+.|++.++..+...+++.|++|+++|++.+++...+..+|.++++.++..+... ..+||+.+++.+++
T Consensus 264 l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp 343 (742)
T TIGR01299 264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFP 343 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877554421 12799999999888
Q ss_pred HHHHHHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCc-chhhhHH--HHHH--hhh---hcccccc
Q 013779 150 ALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDK-LSERQIE--DTLV--SLK---SSYTDEK 221 (436)
Q Consensus 150 ~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~---~~~~~~~ 221 (436)
+++.++..+++||||+|+.. +++.+++.+.+++++..+.... .+..... .... ... +..+.+.
T Consensus 344 ~ll~ll~~~~lPESPrwL~~---------~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (742)
T TIGR01299 344 CVFAIGALTFMPESPRFFLE---------NGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTG 414 (742)
T ss_pred HHHHHHHHHHcCCCHHHHHH---------CCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhccccccc
Confidence 88887777889999999986 4556777777777776553321 1111100 0000 000 0000000
Q ss_pred ----------------ccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhc------------------
Q 013779 222 ----------------SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA------------------ 267 (436)
Q Consensus 222 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 267 (436)
...+++++++.+ +++..+...+.++.....++.+..|.|.++++.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~ 493 (742)
T TIGR01299 415 TWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVA 493 (742)
T ss_pred chhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchh
Confidence 001345566554 454555555666776777788999999876441
Q ss_pred ------------------------CC---------C-----------c--------------------------------
Q 013779 268 ------------------------GF---------S-----------A-------------------------------- 271 (436)
Q Consensus 268 ------------------------~~---------~-----------~-------------------------------- 271 (436)
|+ + .
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 573 (742)
T TIGR01299 494 HFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQN 573 (742)
T ss_pred ccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhh
Confidence 00 0 0
Q ss_pred --------------------chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCc
Q 013779 272 --------------------AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP 331 (436)
Q Consensus 272 --------------------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (436)
.........+..++.+++.++.++++||+|||+++..+.++.+++.+++... .+.
T Consensus 574 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-----~s~ 648 (742)
T TIGR01299 574 CSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG-----NSE 648 (742)
T ss_pred ccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-----ccH
Confidence 0012344566678899999999999999999999888888777777665532 122
Q ss_pred hHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHH
Q 013779 332 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLA 411 (436)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 411 (436)
...+...++. +++.....+....+++|.+|++.|++++|+.+....+|++++|.+.+.+.+. +...+|++.+++.+++
T Consensus 649 ~~ll~~~~l~-g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 649 SAMIALLCLF-GGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACG 726 (742)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 2233333333 3333334456668999999999999999999999999999999999988775 4556777777777776
Q ss_pred HhheeEecccCCCCC
Q 013779 412 VLFIVRTVPETKGLS 426 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~ 426 (436)
+++.+ ++||++++.
T Consensus 727 ~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 727 GLLAL-KLPDTRGQV 740 (742)
T ss_pred HHHHH-hCCCCcccc
Confidence 66544 458887654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=321.04 Aligned_cols=400 Identities=23% Similarity=0.288 Sum_probs=282.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchh------HHHHHHHHHHHhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG------LGVLLVGRLLYGLGIG 88 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~ 88 (436)
.+.++.+.+++.+.+.++..++++++|+++||+|||+++.++.++..++.++++++++ ++.++++|+++|++.|
T Consensus 51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence 3567778899999999999999999999999999999999999999999999888765 7899999999999999
Q ss_pred hhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccc----------------------ccccchHHHhhh
Q 013779 89 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN----------------------AVGGWRYMYGLS 146 (436)
Q Consensus 89 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~----------------------~~~~w~~~f~~~ 146 (436)
...+....+++|++|+++|++++++.+....+|..+++.++..+.. ...+||++|.+.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~ 210 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG 210 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence 9999999999999999999999999999999999999988765431 012799999999
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccc
Q 013779 147 APLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF 226 (436)
Q Consensus 147 ~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (436)
++++++..+..+++||||||+..|++ +++++.+...+.+..+..++. ++.++ .+++ ++..+.++
T Consensus 211 ~ip~~i~~~~~~~lpESpr~l~~~~~--------~~~~a~~~~~~~~~~~~~~~~--~~~~~----~~~~--~~~~~~~~ 274 (502)
T TIGR00887 211 AVPALLALYFRLTIPETPRYTADVAK--------DVEQAASDMSAVLQVKIEAEP--DEVEK----ASTA--VEVPKASW 274 (502)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHhCc--------chHHHHHHHHHHhccccccCc--ccccc----hhcc--ccchhhhH
Confidence 88888887778899999999986422 112333444433332211111 01000 0000 01112346
Q ss_pred hhhccCC---chhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhh-----------HHHHHHHHHHHHHHHHH
Q 013779 227 LEVFQGP---NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADA-----------TRVSVVIGVFKLVMTWI 292 (436)
Q Consensus 227 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 292 (436)
+++++++ +.++..+.....++.....++....|.|.++++.|.+..... ........++.+++.++
T Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 354 (502)
T TIGR00887 275 SDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWV 354 (502)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6776532 222333332233333322333456678888888877642110 11233444566778899
Q ss_pred HHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHH
Q 013779 293 AVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL 372 (436)
Q Consensus 293 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 372 (436)
.+++.||+|||+.+..+..+..++..++...... ......+.........+..+..+..+.+..|.+|++.|+++.|+
T Consensus 355 ~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~ 432 (502)
T TIGR00887 355 TVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH--LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGI 432 (502)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHH
Confidence 9999999999998887777766666555543211 11111122222222233445566777889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHh----------CcchhHHHHHHHHHHHHhheeEecccCCCCCHHHHHhh
Q 013779 373 AVLTNFGSNAIVTFAFSPLKELL----------GAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESK 433 (436)
Q Consensus 373 ~~~~~~~g~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (436)
.+.+++++++++|.+.+.+.+.. ++...+.+++++.+++.+.. ++.||+++++.+|+++|
T Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 433 SAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSGE 502 (502)
T ss_pred HHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhCC
Confidence 99999999999999999998843 34567788887777776644 56799999988877654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=316.08 Aligned_cols=398 Identities=33% Similarity=0.572 Sum_probs=287.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc------------hhHHHHHHHHHH
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA------------PGLGVLLVGRLL 82 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l 82 (436)
++.++.+.+++.+.+.++..++++++|+++||+||||++.++.++.+++.++++++ +.++.++++|++
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 129 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999988877753 235678899999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccc--------cccccchHHHhhhhHHHHHHH
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGWRYMYGLSAPLALLMG 154 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~--------~~~~~w~~~f~~~~~~~~~~~ 154 (436)
+|++.|...+...++++|++|+++|++++++.+.+..+|.++++.++..+. +.. +||+.|++.+++.++..
T Consensus 130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~ 208 (479)
T PRK10077 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD-GWRYMFASEAIPALLFL 208 (479)
T ss_pred HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC-ChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988766443 233 89999999888888777
Q ss_pred HHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCc
Q 013779 155 IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 234 (436)
Q Consensus 155 ~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (436)
+..+++||+|+|+..+ ++.+++++..++..+.++. ....++..+..++ ++.. .+..+. ..
T Consensus 209 ~~~~~l~~s~~~l~~~---------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~---~~~~~~-~~ 268 (479)
T PRK10077 209 MLLYFVPETPRYLMSR---------GKQEQAEGILRKIMGNTLA----TQALQEIKHSLDH---GRKT---GGKLLM-FG 268 (479)
T ss_pred HHHHcCCCCcHHHHHc---------CCHHHHHHHHHHHcCChhH----HHHHHHHHHHHHH---hhhh---hhhhcc-hh
Confidence 6677899999886542 2233333333333221110 0011111000000 0000 011111 11
Q ss_pred hhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHH
Q 013779 235 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 314 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 314 (436)
............+....+++...+|.|.+.++.+.+. ..........++..+++.++.+++.||++||+.+..+..+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~ 347 (479)
T PRK10077 269 VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST-DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMA 347 (479)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHH
Confidence 1122222233344444455566778898888888776 456667777888899999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHH--
Q 013779 315 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-- 392 (436)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~-- 392 (436)
++.+.+..... ............+.+..++.....|..+.+++|.+|+++|+++.|+.+..++++..+++.+++.+.
T Consensus 348 v~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~ 426 (479)
T PRK10077 348 IGMFSLGTAFY-TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKN 426 (479)
T ss_pred HHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 77766653321 111222233333444444444556777899999999999999999999999999999887776544
Q ss_pred ----HHhCcchhHHHHHHHHHHHHhheeEecccCCCCCHHHHHhhhh
Q 013779 393 ----ELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKIL 435 (436)
Q Consensus 393 ----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (436)
+..++...|++.+++++++.++.+.+.+|+++++.+|.+++.+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 427 SWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473 (479)
T ss_pred cchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence 5677888888888887877777777788999888888776654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=309.84 Aligned_cols=411 Identities=35% Similarity=0.601 Sum_probs=300.7
Q ss_pred ccccCcccCccccccc--------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc---h
Q 013779 3 IAQSPELSGTTWFNLS--------AVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA---P 71 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s--------~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~ 71 (436)
.+..|.+..+ ++.+ ..+.+++.+++.++..++++++|+++||+|||+++..+.+++.++.+++.+. .
T Consensus 48 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 125 (481)
T TIGR00879 48 GGALALPAFE--FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFAL 125 (481)
T ss_pred hhhhhcHHHH--HhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4556777766 4454 8999999999999999999999999999999999999999999999988553 4
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHh---hccccccccchHHHhhhhH
Q 013779 72 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG---SFQINAVGGWRYMYGLSAP 148 (436)
Q Consensus 72 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~---~~l~~~~~~w~~~f~~~~~ 148 (436)
+++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..+++.++ ....+.. +||+.|++.++
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~w~~~f~~~~~ 204 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTL-GWRIPLGLQLI 204 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCc-cHHHHHHHHHH
Confidence 5668999999999999999999999999999999999999999999999999999998 6655555 99999999777
Q ss_pred HHHHHHHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchh
Q 013779 149 LALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLE 228 (436)
Q Consensus 149 ~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (436)
..++..+..+++||+|+++..++ +.++..+..++.+..++.+....+..+..... .+ .+.+..+..+.+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 273 (481)
T TIGR00879 205 PAGLLFLGLFFLPESPRWLVGKG---------RVEEARKSLARLRGTSGEDKELLDELELIDIK-RS-IEKRSVQPSWGS 273 (481)
T ss_pred HHHHHHHHHhcCCCChHHHHHcC---------ChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH-HH-HHHhhccccHHH
Confidence 77776667778999998765421 11222222222222221111111100000000 00 001111111333
Q ss_pred hccCC--chhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEe
Q 013779 229 VFQGP--NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 306 (436)
Q Consensus 229 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 306 (436)
.++.. ..+.......+..+..........++.|.+.++.|.+. ...+.......++.+++.++.+++.||++||+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 352 (481)
T TIGR00879 274 LFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST-DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL 352 (481)
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 33322 23444444555555555555667788898888888887 7788888888899999999999999999999988
Q ss_pred ehhhHHHHHHHHHHHHHHHHHcCC-----chHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHH
Q 013779 307 IGGVCGIALSLLLLSAYYKILGGF-----PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 381 (436)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 381 (436)
..+..+.+++.+.+.......... ....+....++.++++.+..+....+..|.+|++.|+++.++.+...++++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~ 432 (481)
T TIGR00879 353 LIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLAN 432 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHH
Confidence 887777666665554321111111 333344444555556666667777888999999999999999999999999
Q ss_pred HHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhheeEecccCCCCCHH
Q 013779 382 AIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLE 428 (436)
Q Consensus 382 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (436)
+++|.+.+.+.+..++...|++.+++++++.++.+.+.+|+++++.+
T Consensus 433 ~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 433 FIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 99999999999999999999999988888888777777877766543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=310.13 Aligned_cols=392 Identities=26% Similarity=0.341 Sum_probs=288.2
Q ss_pred cccCcccCccccccc---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 013779 4 AQSPELSGTTWFNLS---AVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGR 80 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s---~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 80 (436)
+..|.+.+| +|++ +.+.++..+++.++..+++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|
T Consensus 110 ~~~~~i~~e--~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r 187 (505)
T TIGR00898 110 TFSSTIVTE--WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR 187 (505)
T ss_pred cccccEEEE--ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 567888888 9999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcC
Q 013779 81 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 160 (436)
Q Consensus 81 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 160 (436)
++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+. +||+.|++.+++.++..+..+++
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999987653 59999999999888887777889
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
||+|+|+..+ ++.+++.+..++..+.+......+.. +...+ ++.++++++.++++++++|.++...+
T Consensus 264 ~esp~~l~~~---------~~~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (505)
T TIGR00898 264 PESPRWLISQ---------GRIEEALKILQRIAKINGKKLPAEVL-SLSLE---KDLSSSKKQYSFLDLFRTPNLRKTTL 330 (505)
T ss_pred CCChHHHHHC---------CCHHHHHHHHHHHHHHcCCCCCHHHH-hhhhh---hhhhhccCCCcHHHHhCChHHHHHHH
Confidence 9999998763 33444444444443333222111110 00000 00011122356788999998887776
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 320 (436)
...+.++.....+..... +..+.+.+ ........++..+++.++.+++.||+|||+.+..+..+.+++.+++
T Consensus 331 ~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~ 402 (505)
T TIGR00898 331 CLMMLWFTTAFSYYGLVL----DLGNLGGN----IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLL 402 (505)
T ss_pred HHHHHHHHHHHHHHHHhc----cccccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 655555544322222222 22333332 3344556677888999999999999999999888877777766655
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchh
Q 013779 321 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENI 400 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 400 (436)
... .....+......++...+.. ...+..+.+..|.+|++.|+++.|+.++...+|+.++|.+.+ + +..++..+
T Consensus 403 ~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~ 476 (505)
T TIGR00898 403 LFV---PVDLYFLRTALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLP 476 (505)
T ss_pred HHc---CCCchHHHHHHHHHHHHHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhH
Confidence 432 11111222222222222222 333455688999999999999999999999999999999988 4 44556677
Q ss_pred HHHHHHHHHHHHhheeEecccCCCCCHHH
Q 013779 401 FLLFAAIAFLAVLFIVRTVPETKGLSLEE 429 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (436)
+.+++++.++++++. .++||+++++.+|
T Consensus 477 ~~~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 477 LVLFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred HHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 777777777776654 4568888766543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=297.95 Aligned_cols=403 Identities=40% Similarity=0.627 Sum_probs=328.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhhHhh
Q 013779 20 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 99 (436)
Q Consensus 20 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 99 (436)
.+.+++.+...++..++++++|+++|++|||+.++++.+++.++.+++++++|++.++++|+++|+|.|+.......+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCChHHHHHHhhcCcCccc
Q 013779 100 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQ 179 (436)
Q Consensus 100 ~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~ 179 (436)
|..|++.||...+..+....+|..++..++....+...+||..+.+..+++++..+..+++||||+|+.+ +
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~---------~ 239 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIE---------K 239 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH---------c
Confidence 9999999999999999999999999977766654331289999999999999988888899999999997 6
Q ss_pred hHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhc
Q 013779 180 EYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYY 259 (436)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (436)
++.+++++.+.++++.++.+.. .+.+....+...+......+..+.++++....++..++..+..+.+..+++...+|
T Consensus 240 g~~~~a~~~l~~l~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y 317 (513)
T KOG0254|consen 240 GRLEEAKRSLKRLRGLSPEDVE--VELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYY 317 (513)
T ss_pred CChHHHHHHHHHHhCCCCcchH--HHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEee
Confidence 7788888888888884422221 11111111111111111112245666665566678888999999999999999999
Q ss_pred hHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcC-------Cch
Q 013779 260 AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG-------FPL 332 (436)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 332 (436)
.+.+++..+...+. .......++..+++..++..+.||+|||+.++.+...+.++.+++......... ..+
T Consensus 318 ~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
T KOG0254|consen 318 STTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGW 395 (513)
T ss_pred hHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhH
Confidence 99999999988633 666777778888888999999999999999999999999999888876554322 245
Q ss_pred HHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHH
Q 013779 333 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV 412 (436)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 412 (436)
..+...+++...+..+..|+.|.+.+|.+|.+.|+.+.++....++..+.+-...+....+..+....|..++.++.+..
T Consensus 396 ~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~ 475 (513)
T KOG0254|consen 396 LAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSL 475 (513)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 66677778888889999999999999999999999999999999999988877777777666553456666666666666
Q ss_pred h-heeEecccCCCCCHHHHHhhhh
Q 013779 413 L-FIVRTVPETKGLSLEEIESKIL 435 (436)
Q Consensus 413 ~-~~~~~~~~~~~~~~~~~~~~~~ 435 (436)
. ..+...||+++++.+|+++..+
T Consensus 476 ~~fv~~~~pETkg~sleei~~~~~ 499 (513)
T KOG0254|consen 476 IIFVFFFVPETKGLTLEEINELFE 499 (513)
T ss_pred HHHheEEcccCCCCcHHHHHHHHH
Confidence 6 6788899999999999877543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=287.82 Aligned_cols=381 Identities=17% Similarity=0.148 Sum_probs=290.1
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
....|++.+| .++|.+|+|++.+++.+.+.++.++.|.++||.++|+.+.+++++.++.+++++++++.+.+.++.++
T Consensus 49 ~~a~p~l~e~--~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~l 126 (448)
T COG2271 49 NLAMPALIED--GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVL 126 (448)
T ss_pred hhccHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4578999998 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHh--hccccccccchHHHhhhhHHHHHHHHHH-hc
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG--SFQINAVGGWRYMYGLSAPLALLMGIGM-WS 159 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~--~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~ 159 (436)
.|..+|..+|.+...+..|++++|||+..++++.+.++|..+.|++. +++..+. +||..|++.++++++..++. +.
T Consensus 127 ng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~-~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 127 NGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-GWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred HHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 8877777 99999999999999886655 46
Q ss_pred CCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHH
Q 013779 160 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFI 239 (436)
Q Consensus 160 ~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (436)
.+|+|+- ...++.++..+++.+.. ++.++.+.......-.+.+++||..|.+.
T Consensus 206 ~rd~Pqs--------------------------~GLP~ie~~~~d~~e~~-~~~~~~~~ls~~~i~~~YVL~Nk~iW~la 258 (448)
T COG2271 206 LRDRPQS--------------------------EGLPPIEEYRGDPLEIY-EEEKENEGLTAWQIFVKYVLKNKLIWLLA 258 (448)
T ss_pred hCCCccc--------------------------cCCCCHHHhhcCchhhh-hhhccCCCccHHHHHHHHHHcChHHHHHH
Confidence 7777741 00000000000000000 00000000111122345678899888888
Q ss_pred HHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc--CCccEeehhhHHHHHHH
Q 013779 240 IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL--GRRPLLIGGVCGIALSL 317 (436)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~ 317 (436)
++..+....-. .+..|.|.|+.|...-+...+....+.+-.++++|.++.|+++||+ |||........+.....
T Consensus 259 ~a~vfvYivR~----gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~ 334 (448)
T COG2271 259 LANVFVYVVRY----GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITAS 334 (448)
T ss_pred HHHHHHHHHHH----HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 77666666554 5889999999885554448899999999999999999999999996 45544433322222222
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHH-HHHHHHHhhHHHHHHhC
Q 013779 318 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG-SNAIVTFAFSPLKELLG 396 (436)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~g 396 (436)
+.... ..++.+......++...|+.-.+..-+.-....|..|++..|++.|+...++++ |...+....|++.|.+|
T Consensus 335 ~~~~w---~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g 411 (448)
T COG2271 335 LVLYW---LAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG 411 (448)
T ss_pred HHHHH---cCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence 22221 122233444445555555554444445556788999999999999999999999 88899999999999999
Q ss_pred cchhHHHHHHHHHHHHhheeEecc
Q 013779 397 AENIFLLFAAIAFLAVLFIVRTVP 420 (436)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~ 420 (436)
|...|.+..+.++++.+++....+
T Consensus 412 W~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 412 WDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHh
Confidence 999999988888888776554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=281.08 Aligned_cols=353 Identities=25% Similarity=0.282 Sum_probs=281.5
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
...++|++.+| ||+|..+.|++.|.|.+++.+++++...+.||+.||++++..+.++.++++++++++||+.++++|+
T Consensus 32 ~~gLLp~iA~d--l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~ 109 (394)
T COG2814 32 PVGLLPPIAAD--LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109 (394)
T ss_pred HHhchHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 35689999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~ 160 (436)
+.|+..|..++...++..+..|+++|++++++...+..++.++|.+++.++.+.. |||..|++.+.++++..+..+ .+
T Consensus 110 ~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-GWR~~F~~ia~l~ll~~~~~~~~l 188 (394)
T COG2814 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GWRATFLAIAVLALLALLLLWKLL 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999988 999999999999998866554 67
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
| |+ +.+.+.+.+..+..+++|+|..+...+
T Consensus 189 P--~~------------------------------------------------~~~~~~~~~~~~~~~~l~~p~v~~~l~ 218 (394)
T COG2814 189 P--PS------------------------------------------------EISGSLPGPLRTLLRLLRRPGVLLGLL 218 (394)
T ss_pred C--Cc------------------------------------------------cCCCCCCcchhHHHHHhcCchHHHHHH
Confidence 7 21 000011112223567788888877765
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 319 (436)
...+....+ +....|...++++ .|++. ...++....++++.++|+.++|++.|| +.|+.+.....+.++..+.
T Consensus 219 ~t~l~~~g~----F~~ftYi~P~L~~v~g~s~-~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~ 292 (394)
T COG2814 219 ATFLFMTGH----FALYTYIRPFLESVAGFSV-SAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLA 292 (394)
T ss_pred HHHHHHcch----hhhHHhHHHHHHHccCCCH-hHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHH
Confidence 554444443 3455566666666 55555 889999999999999999999999999 8888877777777776666
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcch
Q 013779 320 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAEN 399 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 399 (436)
+.... ++.+..+....+ .+..............++.. ++.+..+.+++....++|...|..+.|.+.|+.|+..
T Consensus 293 l~~~~----~~~~~~~~~~~~-wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~ 366 (394)
T COG2814 293 LTFTG----ASPALALALLFL-WGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAA 366 (394)
T ss_pred HHHhc----chHHHHHHHHHH-HHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 55432 233333333333 22222222222224444533 4889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhheeEec
Q 013779 400 IFLLFAAIAFLAVLFIVRTV 419 (436)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~ 419 (436)
..+..+.+.+++..+.....
T Consensus 367 ~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 367 TGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877654433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=287.40 Aligned_cols=358 Identities=16% Similarity=0.106 Sum_probs=267.9
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+++.+|.+++| +|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.+++.|+
T Consensus 28 ~~~~lp~i~~~--~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 28 VGPLLPQLRQA--SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred cchhHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 56889999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 161 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 161 (436)
++|++.+...+....++.|++| ++|+++++++..+...|..+++.+++++.+...+||+.+.+.++..++.....+...
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS 184 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999996 789999999999999999999999998877654899988776665544433332221
Q ss_pred C-ChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 162 P-SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 162 e-s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
+ .|+ ++ + ++ +...++.+++++.+...+
T Consensus 185 ~~~~~---------------------------------~~--------------~--~~---~~~~~~~l~~~~~~~l~~ 212 (393)
T PRK09705 185 AREVA---------------------------------SS--------------H--KT---TTTPVRVVFTPRAWTLGV 212 (393)
T ss_pred cCCCc---------------------------------cc--------------c--CC---CcCCcccccCHhHHHHHH
Confidence 1 110 00 0 00 001233455565554443
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 320 (436)
...+... .+.....|.|.++++.+.+. .+.+.......++.++++++.+++.||.+||+....+..+..++...+
T Consensus 213 ~~~~~~~----~~~~~~~~lp~~l~~~g~s~-~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~ 287 (393)
T PRK09705 213 YFGLING----GYASLIAWLPAFYIEIGASA-QYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF 287 (393)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 3322222 33356678888888887776 778889999999999999999999999999988877766665555443
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccC-CccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC-cc
Q 013779 321 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF-PLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AE 398 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~ 398 (436)
... +.+... .. ..+. +.......|.......+.. |++.+++..|+.+...+++..++|.+.|++.|..| +.
T Consensus 288 ~~~----~~~~~~-~~-~~l~-g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 360 (393)
T PRK09705 288 IWL----PLQLPV-LW-AMVC-GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYL 360 (393)
T ss_pred HHc----cchHHH-HH-HHHH-HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 321 111111 11 1122 2222223334444555555 46789999999999999999999999999999987 66
Q ss_pred hhHHHHHHHHHHHHhheeEecccCCCCC
Q 013779 399 NIFLLFAAIAFLAVLFIVRTVPETKGLS 426 (436)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (436)
..|.+.++++++..+......+|++++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 361 MDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccch
Confidence 7777777777766666666677776553
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=288.58 Aligned_cols=349 Identities=19% Similarity=0.191 Sum_probs=265.2
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 83 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 83 (436)
+.+|.+.+| +|.|+++.|++.+.+.+++.+++++.|+++||+||||++..+.++.+++++.+++++|++.+++.|+++
T Consensus 30 ~~~~~l~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~ 107 (390)
T PRK03545 30 GLLSDIAQS--FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGI 107 (390)
T ss_pred cchHHHHhH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 567889888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cCCC
Q 013779 84 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPP 162 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~e 162 (436)
|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+.+.. +||+.|++.++++++..+..+ .+||
T Consensus 108 G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~~~~l~~~~~~~~~~~ 186 (390)
T PRK03545 108 AFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTFLAIGGGALITLLLLIKLLPL 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999988777 999999999888777654443 4555
Q ss_pred ChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHH
Q 013779 163 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG 242 (436)
Q Consensus 163 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (436)
+|+ + ++++..+.++.+|+|.++......
T Consensus 187 ~~~-------------~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 214 (390)
T PRK03545 187 LPS-------------E---------------------------------------HSGSLKSLPLLFRRPALVSLYLLT 214 (390)
T ss_pred CCC-------------C---------------------------------------CcchHHHHHHHHhCcHHHHHHHHH
Confidence 331 0 000001234577777766544433
Q ss_pred HHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHH
Q 013779 243 GLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 321 (436)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 321 (436)
.+...... ....+.+.++++ .+.+. .+.+.......++.+++.++.+++.||+++|+. ..+..+...+...+.
T Consensus 215 ~~~~~~~~----~~~~~~~~~l~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~ 288 (390)
T PRK03545 215 VVVVTAHF----TAYSYIEPFVQQVAGLSE-NFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLL 288 (390)
T ss_pred HHHHHHHH----HHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHH
Confidence 33222222 233455555655 56665 678888888889999999999999999987754 334333333333222
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhH
Q 013779 322 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF 401 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 401 (436)
.. .++.+... ...+..+.......+.......+..| +.|++++|+.+...++|..+||.+.|.+.|..|++..+
T Consensus 289 ~~----~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~ 362 (390)
T PRK03545 289 PA----ANSEWHLS-VLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIG 362 (390)
T ss_pred HH----hchHHHHH-HHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHH
Confidence 11 12222222 23333333333334444466777766 68899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhheeEec
Q 013779 402 LLFAAIAFLAVLFIVRTV 419 (436)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~ 419 (436)
+..+.+.+++.++.....
T Consensus 363 ~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 363 YVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999888888777654443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=294.95 Aligned_cols=375 Identities=18% Similarity=0.198 Sum_probs=248.8
Q ss_pred ccccCcccCccccccchhH----HHH--HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHH-
Q 013779 3 IAQSPELSGTTWFNLSAVQ----LGL--VVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV- 75 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~----~g~--~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~- 75 (436)
+...|.+.++ |+.+.++ .+. +.++..+++.+++++.|+++||+|||+++.+++++++++++++++++|++.
T Consensus 36 ~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~ 113 (490)
T PRK10642 36 GFVAYALGKV--FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATI 113 (490)
T ss_pred HHHHHHHHHh--hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 4556777776 6543322 222 257888999999999999999999999999999999999999999999874
Q ss_pred -------HHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccc--------cccccch
Q 013779 76 -------LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGWR 140 (436)
Q Consensus 76 -------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~--------~~~~~w~ 140 (436)
++++|+++|++.|+..+...+++.|++|+++|+++.++...+..+|..+++.+...+. ... |||
T Consensus 114 g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~-gWR 192 (490)
T PRK10642 114 GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDW-GWR 192 (490)
T ss_pred HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCc-cHH
Confidence 8999999999999999999999999999999999999999988888888886654432 134 999
Q ss_pred HHHhhhhHHHHHHHHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccc
Q 013779 141 YMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 220 (436)
Q Consensus 141 ~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (436)
+.|++.++++++..++...+||+|+|...++.. ++. +. + . ..+
T Consensus 193 ~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~---------~~~----------~~-~----------------~-~~~ 235 (490)
T PRK10642 193 IPFFIALPLGIIGLYLRHALEETPAFQQHVDKL---------EQG----------DR-E----------------G-LQD 235 (490)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhh---------hhh----------cc-c----------------c-ccc
Confidence 999998777666555566789999875321100 000 00 0 0 000
Q ss_pred cccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013779 221 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 299 (436)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 299 (436)
.++.++++++++ +.+........ .+.....+.....|.|.++++ .+.+. ...........++.+++.++.|+++||
T Consensus 236 ~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr 312 (490)
T PRK10642 236 GPKVSFKEIATK-HWRSLLTCIGL-VIATNVTYYMLLTYMPSYLSHNLHYSE-DHGVLIIIAIMIGMLFVQPVMGLLSDR 312 (490)
T ss_pred cccCCHHHHHHH-hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234555553 22222222222 222223334566788888855 56665 556666777778889999999999999
Q ss_pred cCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHH
Q 013779 300 LGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG 379 (436)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 379 (436)
+|||+.+..+..+..+....+.... ...+.........+...+.+.. .+....+..|.+|++.|+++.|+.+.....
T Consensus 313 ~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~-~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~ 389 (490)
T PRK10642 313 FGRRPFVILGSVALFVLAIPAFILI--NSNVIGLIFAGLLMLAVILNCF-TGVMASTLPAMFPTHIRYSALAAAFNISVL 389 (490)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCccchHHHHHHHHHHHH
Confidence 9999977666544333222211111 1112222222222222222222 223346777899999999999987666777
Q ss_pred HHHHHHHhhHHHHHHhC-cchhHHHHHHHHHHHHhheeEecccCCC
Q 013779 380 SNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVRTVPETKG 424 (436)
Q Consensus 380 g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (436)
++.++|.+.+++.+..+ +..++....+..+++.+.. ++.||+++
T Consensus 390 ~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~ 434 (490)
T PRK10642 390 VAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETAN 434 (490)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccC
Confidence 78899999999988765 4555555555555444433 33466543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=291.18 Aligned_cols=374 Identities=17% Similarity=0.182 Sum_probs=266.4
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
.+.+|.+.++ +|+|+.+.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|++
T Consensus 38 ~~~~~~i~~~--~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 115 (426)
T PRK12307 38 FYIMYLIKAD--LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFI 115 (426)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4567888877 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCC
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 162 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e 162 (436)
+|++.+...+....++.|++|+++|+++.++...+.++|.++++.+.+.+.+.. +||+.|++..+..++........||
T Consensus 116 ~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-~w~~~f~i~~~~~~~~~~~~~~~p~ 194 (426)
T PRK12307 116 VGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-GWRAAFFVGLLPVLLVIYIRARAPE 194 (426)
T ss_pred HHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-CHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999998887777 9999998865444433333334566
Q ss_pred ChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHH
Q 013779 163 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG 242 (436)
Q Consensus 163 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (436)
++++...+ .+.+++ + ++...+..+.+++++++++.++......
T Consensus 195 ~~~~~~~~---------------------~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (426)
T PRK12307 195 SKEWEEAK---------------------LSGKGK-H---------------SQSAWSVFSLSMKGLFNRAQFPLTLCVF 237 (426)
T ss_pred ChHHHHhh---------------------hhcccc-c---------------cccchhhhhHHHHHHHhhchHHHHHHHH
Confidence 55421100 000000 0 0000001112456777877766544333
Q ss_pred HHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHH
Q 013779 243 GLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSA 322 (436)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 322 (436)
.... ........+..+.|.++++.+.+. ...+.......++.+++.++.+++.||++||+....+..+..+....+..
T Consensus 238 ~~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 315 (426)
T PRK12307 238 IVLF-SIFGANWPIFGLLPTYLAGEGFDT-GVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFR 315 (426)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 2222 222222235567788888887765 67778888888999999999999999999998877666655544433322
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHH
Q 013779 323 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFL 402 (436)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~ 402 (436)
. .......+.......+....+..+....++.|.+|++.|+++.|+.+....+++.++|.+.|.+.+..|+....+
T Consensus 316 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 316 I----PQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALT 391 (426)
T ss_pred H----ccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 1 112222222222222222223334445778899999999999999999999999999999999999988654433
Q ss_pred H-HHHHHHHHHhheeEecccC
Q 013779 403 L-FAAIAFLAVLFIVRTVPET 422 (436)
Q Consensus 403 ~-~~~~~~~~~~~~~~~~~~~ 422 (436)
+ .+..+..+........+++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~ 412 (426)
T PRK12307 392 FIVAFWTATILLIIGLSIPDR 412 (426)
T ss_pred HHHHHHHHHHHhhccccCChh
Confidence 3 3333333333333334443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=283.18 Aligned_cols=347 Identities=18% Similarity=0.086 Sum_probs=246.9
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+++.+|.+++| +|+|+.|.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......++++.+++.|+
T Consensus 10 ~~~~lp~i~~~--~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 87 (368)
T TIGR00903 10 FSPVLSLVAED--IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQL 87 (368)
T ss_pred HHhhHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 56889999998 9999999999999999999999999999999999998876655555444333333479999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHH-HhcC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG-MWSL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~-~~~~ 160 (436)
++|++.+. .+.....++|++|+++|++++++.+.+.++|.++++++++++.+.. +||+.|++.++++++..+. .+++
T Consensus 88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~~f~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-GLQLLIIPIAAVAAAGIILVLAAL 165 (368)
T ss_pred HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999986 5566666799999999999999999999999999999999988877 9999999988887776554 4578
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
||+|++.. +..+ . ++ ..+++++++|+|.++...+
T Consensus 166 p~~p~~~~----------------------------~~~~--~---~~-------------~~~~~~~ll~~~~~~~~~~ 199 (368)
T TIGR00903 166 PALPFQAA----------------------------EGFG--F---KD-------------AVKEFGALAGRKDLWIIGA 199 (368)
T ss_pred CCCCCCCC----------------------------CCcc--h---HH-------------HHHHHHHHHcChhHHHHHH
Confidence 88875200 0000 0 00 0012567888888877665
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc---cEeeh-hhHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR---PLLIG-GVCGIALS 316 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~ 316 (436)
..++..... ..+..|.|.++++.+++. ..+.......+.+.++ .++++||..|| +.... .....++.
T Consensus 200 ~~~~~~~~~----~~~~~wlp~~L~~~g~s~--~~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~ 270 (368)
T TIGR00903 200 ILGFGVALF----DNLAIWLEAALRPAGLED--IAGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAF 270 (368)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHCCCCh--HHHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 544444433 357789999998877664 3555555555555544 46777877554 22221 22222222
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC
Q 013779 317 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 396 (436)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 396 (436)
...+.. ..+....+. .....+.+.....+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. |
T Consensus 271 ~~~~~~-----~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~ 342 (368)
T TIGR00903 271 FLALAF-----ELNRLALFA-FIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S 342 (368)
T ss_pred HHHHHH-----ccccHHHHH-HHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C
Confidence 222211 112222222 22222233333334566889999999999999999999999999999999988774 6
Q ss_pred cchhHHHHHHHHHHHHhhe
Q 013779 397 AENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~ 415 (436)
....|..+++..+++++..
T Consensus 343 ~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 343 AEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677888888877777654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=291.47 Aligned_cols=380 Identities=14% Similarity=0.119 Sum_probs=267.4
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
++.+|.+.++ +|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++
T Consensus 43 ~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 120 (434)
T PRK11663 43 NAAMPEMLAD--LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVL 120 (434)
T ss_pred HHhhHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5678899888 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHH-HHhcCC
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLP 161 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~ 161 (436)
.|++.|...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+.+.. +||+.|++.+++.++..+ ..++++
T Consensus 121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~f~~~~i~~~~~~~~~~~~~~ 199 (434)
T PRK11663 121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-GWRYGMMIAGIIAIVVGLFLCWRLR 199 (434)
T ss_pred HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999988877 999999998887765543 345678
Q ss_pred CChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccc-hhhccCCchhHHHH
Q 013779 162 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF-LEVFQGPNLKAFII 240 (436)
Q Consensus 162 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 240 (436)
|+|++... +.. + ++..+ ..+...+ +++ ++.+.+..+ ...++++.++...+
T Consensus 200 ~~p~~~~~---~~~----~------------------~~~~~-~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 250 (434)
T PRK11663 200 DKPQAMGL---PSV----G------------------EWRHD-ALELAQQ--QEG-AGLSRKEILTKYVLLNPYIWLLSF 250 (434)
T ss_pred CCHhhcCC---CCc----c------------------ccccc-ccccchh--ccc-cCCChhhhHHHHHhcChHHHHHHH
Confidence 87652100 000 0 00000 0000000 000 000000011 12456676665544
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcC--CccEeehh-hHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG--RRPLLIGG-VCGIALS 316 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~-~~~~~~~ 316 (436)
........ +..+..|.|.++++ .|.+. .+.+.......++..+++++.|+++||+. +|+..... .....+.
T Consensus 251 ~~~~~~~~----~~~~~~~~p~~l~~~~g~s~-~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~ 325 (434)
T PRK11663 251 SYVLVYVV----RAAINDWGNLYMSETLGVDL-VTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS 325 (434)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence 33333322 23466688888854 57766 67788888889999999999999999983 33332211 1111111
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC
Q 013779 317 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 396 (436)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 396 (436)
...+... . ..............+...............|.+|++.|+++.|+.++..++|.+++|.+.|.+.|..|
T Consensus 326 ~~~~~~~---~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g 401 (434)
T PRK11663 326 VGSLWLM---P-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH 401 (434)
T ss_pred HHHHHHc---c-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc
Confidence 1111111 1 11222222222222222222222233566899999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhheeEecccCC
Q 013779 397 AENIFLLFAAIAFLAVLFIVRTVPETK 423 (436)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (436)
+...|...+++.+++++..+...++++
T Consensus 402 ~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 402 WTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999998888887765544444443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=284.43 Aligned_cols=374 Identities=18% Similarity=0.211 Sum_probs=258.1
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
++...|.+++| +|+|+++.|++.+++.+++.+++++.|+++||+|||+++..++++++++++++++++|++.+++.|+
T Consensus 27 ~~~~~~~l~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 104 (412)
T TIGR02332 27 IGFAGLTMGKD--LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRI 104 (412)
T ss_pred HHHHHHhhHhh--cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34567888888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccc-----cccchHHHhhhhHHHHHHHH-
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA-----VGGWRYMYGLSAPLALLMGI- 155 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~-----~~~w~~~f~~~~~~~~~~~~- 155 (436)
++|++.+...|....++.|++|+++|++++++++.+.++|.++++++++++.+. ..+||+.|++.++++++..+
T Consensus 105 l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~ 184 (412)
T TIGR02332 105 LVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVM 184 (412)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887532 12899999998888776654
Q ss_pred HHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCch
Q 013779 156 GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 235 (436)
Q Consensus 156 ~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (436)
..+++||+|+. +....++ +.+...+..+.+....+.++.+. + .+....+..+++++ ++.+
T Consensus 185 ~~~~~~~~p~~--------~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~-~~~~ 244 (412)
T TIGR02332 185 TWFWLDDSPDK--------AKWLDEE--DKKALKEMIDNDQLTLEQPEGAF-------A--HAAMPQRSMLREIF-TPAI 244 (412)
T ss_pred HhhccCCCccc--------CCCCCHH--HHHHHHHHHHhcccccccccccc-------c--cccccHHHHHHHhc-ChHH
Confidence 44577888741 0000010 10001111110000000000000 0 00000011233333 3444
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHhc--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEee-hhhHH
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSA--GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI-GGVCG 312 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~ 312 (436)
+...+ ..+.....+..+..|.|.++++. +.+. .+.+.......++.+++.++.++++||+++|+... .....
T Consensus 245 ~~~~~----~~~~~~~~~~~~~~~~p~~l~~~~~~~s~-~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~ 319 (412)
T TIGR02332 245 MLYTL----AYFCLTNTLSAINIWTPQILQSFNQGSSN-IMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLF 319 (412)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCcH-HHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHH
Confidence 43332 22333333445778999999885 3444 67788889999999999999999999999876532 22222
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHH
Q 013779 313 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 392 (436)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 392 (436)
..++. .+.. ........+...... +.......+..+....|.+|+++|+++.|+.+...++|++++|.+.|.+.
T Consensus 320 ~~~~~-~~~~----~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~ 393 (412)
T TIGR02332 320 AAAGW-LLAS----ATDHNLIQLLGIIMA-SMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK 393 (412)
T ss_pred HHHHH-HHHH----hcCCHHHHHHHHHHH-HHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence 22222 2111 112222222111111 11111222334455677889999999999999999999999999999999
Q ss_pred HHhC-cchhHHHHHHHH
Q 013779 393 ELLG-AENIFLLFAAIA 408 (436)
Q Consensus 393 ~~~g-~~~~~~~~~~~~ 408 (436)
|..| |...+...+++.
T Consensus 394 ~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 394 DATGSFNSGLWFVAALL 410 (412)
T ss_pred ccCCCCchhHHHHHHHH
Confidence 9886 877777666543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=296.77 Aligned_cols=376 Identities=17% Similarity=0.114 Sum_probs=262.5
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc-----chhHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----APGLGVL 76 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l 76 (436)
+++..|.+.+| +|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++.++ +++++.+
T Consensus 48 ~~~~~~~i~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (467)
T PRK09556 48 FKAAQNDMIST--YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLM 125 (467)
T ss_pred hhhhhHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 45678999988 9999999999999999999999999999999999999998888888777766554 6899999
Q ss_pred HHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccc--ccchHHHhhhhHHHHHHH
Q 013779 77 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV--GGWRYMYGLSAPLALLMG 154 (436)
Q Consensus 77 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~--~~w~~~f~~~~~~~~~~~ 154 (436)
++.|+++|++.+...|...+++.||+|+++|++++++...+.++|.++++++..++.... .+||..|.+.++++++..
T Consensus 126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~ 205 (467)
T PRK09556 126 IALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIG 205 (467)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887655432 269999998888877765
Q ss_pred HHHh-cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhcccccccccc-chhhccC
Q 013779 155 IGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS-FLEVFQG 232 (436)
Q Consensus 155 ~~~~-~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 232 (436)
+..+ +.+++|+.. ...+. ++ . .++ +..+ + + +..+ .++...... .++.+|+
T Consensus 206 i~~~~~~~~~p~~~---------~~~~~-~~---~---~~~-~~~~-----~--~---~~~~-~~~~~~~~~~~~~~l~~ 257 (467)
T PRK09556 206 FIGLRYGSDSPEEL---------GWGKA-EE---I---FGE-PISE-----E--D---KETE-STDMTKWQIFVEYVLKN 257 (467)
T ss_pred HHHHHhCCCChhhc---------CCCCh-hh---c---ccC-ccch-----h--h---hccc-cccCcHHHHHHHHHHcC
Confidence 5444 456665310 00000 00 0 000 0000 0 0 0000 000000011 1236778
Q ss_pred CchhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhH
Q 013779 233 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 311 (436)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 311 (436)
+.++...+...+.... +.....|.|.++++ .|.+. .+.+.......++.+++.++.|+++||++||+.......
T Consensus 258 ~~~~~~~~~~~~~~~~----~~~~~~~~p~yl~~~~g~s~-~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~ 332 (467)
T PRK09556 258 PVIWLLCFANIFLYIV----RIGIDNWSPVYAFQELGFSK-EDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIA 332 (467)
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 7777655444333332 23467788988865 66666 677888888889999999999999999999987655443
Q ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHH-HHHHHHHhhHH
Q 013779 312 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG-SNAIVTFAFSP 390 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~ 390 (436)
...++...+... . ..+........+..+....+..........|.+|++.+|++.|+.+..+++ |.+++|.+.|.
T Consensus 333 ~~~~~~~~~~~~---~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~ 408 (467)
T PRK09556 333 LALIIFTLGVYQ---H-ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGM 408 (467)
T ss_pred HHHHHHHHHHHH---h-cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence 333322221111 1 222222222222222222222212225566999999999999999999997 77999999999
Q ss_pred HHH------------HhCcchhHHHHHHHHHHHHhhee
Q 013779 391 LKE------------LLGAENIFLLFAAIAFLAVLFIV 416 (436)
Q Consensus 391 ~~~------------~~g~~~~~~~~~~~~~~~~~~~~ 416 (436)
+.| ..||+..|++..++.+++.+...
T Consensus 409 i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 409 IADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 999 57799999888877777765444
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=286.21 Aligned_cols=378 Identities=19% Similarity=0.209 Sum_probs=273.6
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+++..|.+.++ +|.|+.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++..+++++++++.+++.|+
T Consensus 13 ~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (399)
T TIGR00893 13 LSFAAPMLQED--LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRV 90 (399)
T ss_pred hhHhHHHHHHh--hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 45667888887 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~ 160 (436)
+.|++.+...+...+++.|++|+++|++++++.+...++|.++++.+++.+.+.. +||+.|++.+++.++..+..+ ..
T Consensus 91 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 169 (399)
T TIGR00893 91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEGVLGIIWGVLWLKFI 169 (399)
T ss_pred HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHhhhee
Confidence 9999999999999999999999999999999999999999999999999888877 899999998888777655544 45
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
||+|+. .+...++++. ...+..+. +.+++++++..+.+.++.+++|+++...+
T Consensus 170 ~~~~~~---------~~~~~~~~~~-~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (399)
T TIGR00893 170 PDPPQK---------AKWLTEEEKY-IVVGGLLA-----------------EQQGKGPSTPKKYQIKELLKDRRVWGLAL 222 (399)
T ss_pred cCCCCc---------cccCCHHHHh-hcchhhcc-----------------ccccccccCCCccchHHHhcCHHHHHHHH
Confidence 665430 0000000000 00000000 00001111223345667788877666555
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhh-HHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV-CGIALSLL 318 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~-~~~~~~~~ 318 (436)
...+..... .....+.|.++++ .+.+. .+.+.......++.+++.++.+++.||++||+...... ....++..
T Consensus 223 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (399)
T TIGR00893 223 GQFLVNIGL----GFFLTWFPTYLVQERGLSI-LEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGL 297 (399)
T ss_pred HHHHHHhHH----HHHHHHHHHHHHHHhcccH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 444443333 3466677777765 45554 67888888899999999999999999999986322211 11111111
Q ss_pred HHHHHHHHHc-CCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC-
Q 013779 319 LLSAYYKILG-GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG- 396 (436)
Q Consensus 319 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g- 396 (436)
.......... ........... ..++...+..+..+++..|.+|++.|+++.|+.+.+.++|..++|.+.|.+.+..|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~ 376 (399)
T TIGR00893 298 VLSLLMFATNYVNIPYAALALV-ALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGS 376 (399)
T ss_pred HHHHHHHHhccchhHHHHHHHH-HHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCc
Confidence 1111111111 11222222222 22233333566777999999999999999999999999999999999999999988
Q ss_pred cchhHHHHHHHHHHHHhhe
Q 013779 397 AENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~ 415 (436)
+...+...+++.+++.+..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 377 FAGALMVVAALALIGALSY 395 (399)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8888888887777665543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=280.37 Aligned_cols=353 Identities=17% Similarity=0.054 Sum_probs=266.3
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
.++..|.+.++ +|+|+++.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+
T Consensus 22 ~~~~~~~~~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (377)
T TIGR00890 22 WTLLAPPLGRY--FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYG 99 (377)
T ss_pred hhhHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999988 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~ 160 (436)
+.|++.+...+.....+.|++| ++|+++.++...+.++|..+++++.+.+.+.. +||+.|++.++++++..+..+ ++
T Consensus 100 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 100 LASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE-GVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHhe
Confidence 9999999888888888999986 67999999999999999988777776666666 899999999988887765554 44
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
+|+|+. + .+++ + +.++++.+.++.+|++.++...+
T Consensus 178 ~~~~~~----------------~----------~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~~ 212 (377)
T TIGR00890 178 GYPPGQ----------------L----------IKTN-I------------------EVSVKDYTVWEMLRTPQFWVLYL 212 (377)
T ss_pred ecCchh----------------c----------cccC-c------------------ccchhhhhHHHHHcCccHHHHHH
Confidence 443210 0 0000 0 00001112345677777665554
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 320 (436)
......+.. .....+.+.+.++.+.+. .+.+.......+..++++++.+++.||++||+.+..+.....++...+
T Consensus 213 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 287 (377)
T TIGR00890 213 SFFLNAVSG----LLLIGLYKPYGQSLGLSD-GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAM 287 (377)
T ss_pred HHHHHhHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 433333222 123344555667777665 677888888999999999999999999999998887777766666554
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchh
Q 013779 321 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENI 400 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 400 (436)
... +..............+.......+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..||+..
T Consensus 288 ~~~----~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 363 (377)
T TIGR00890 288 LFI----PMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYT 363 (377)
T ss_pred HHc----ccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhH
Confidence 432 1111211211122222222233334457888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 013779 401 FLLFAAIAFLAV 412 (436)
Q Consensus 401 ~~~~~~~~~~~~ 412 (436)
|.+.+++.+++.
T Consensus 364 f~~~~~~~~~~~ 375 (377)
T TIGR00890 364 FIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHhc
Confidence 988887776654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=332.32 Aligned_cols=397 Identities=34% Similarity=0.583 Sum_probs=310.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch---hHHHHHHHHHHHhhhhhhhhhhh
Q 013779 18 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP---GLGVLLVGRLLYGLGIGLAMHGA 94 (436)
Q Consensus 18 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~ 94 (436)
++.+.+++.+...+|..+|+++.|.++||+|||+.+.++.++..+++++.++++ +++.+.++|+++|++.|...+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 446789999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccc--ccchHHHhhhhHHHHHHHHHHhcCCCChHHHHHHhh
Q 013779 95 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV--GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAV 172 (436)
Q Consensus 95 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~--~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~ 172 (436)
..++.|..|+++|++..++.+.+..+|.+++..++....... .+||..+.+..+++++..+..+++||||+|+.+
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~--- 200 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLS--- 200 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecc---
Confidence 999999999999999999999999999999998876653332 159999999999998887878899999999987
Q ss_pred cCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCc-hhHHHHHHHHHHHHHHh
Q 013779 173 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN-LKAFIIGGGLVLFQQIT 251 (436)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (436)
+++.+++++..++.++.+..+++.+++.++ .++.++.+.+++++++++. .++......+..+....
T Consensus 201 ------~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (451)
T PF00083_consen 201 ------KGRDEEAEKVLRKLRGKEIEDEEIEEIKAE-------KKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFS 267 (451)
T ss_pred ------cccccccccccccccccccccccccccccc-------cccccccceeeeecccccccccccccccccccccccc
Confidence 445556666666654442222211111111 1111111256778888765 34455555566666666
Q ss_pred ChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHH-HHHHHHcC-
Q 013779 252 GQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS-AYYKILGG- 329 (436)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 329 (436)
+.....+|.+.+.++.+.++. ........+...++.+++.++.||+|||+.+..+..+++++...+. ......+.
T Consensus 268 g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 344 (451)
T PF00083_consen 268 GINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSS 344 (451)
T ss_pred ccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 666777888888888877763 3344455566777788888999999999999988888777777664 11111111
Q ss_pred --CchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHH
Q 013779 330 --FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI 407 (436)
Q Consensus 330 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 407 (436)
.....+....+....+..+..+..+.+..|.+|++.|+++.|+....+++++++++.+...+.+..+....+.+.+++
T Consensus 345 ~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~ 424 (451)
T PF00083_consen 345 SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGV 424 (451)
T ss_pred cccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHH
Confidence 133334444445556666777888899999999999999999999999999999999999888888756778888888
Q ss_pred HHHHHhheeEecccCCCCCHHHHHhh
Q 013779 408 AFLAVLFIVRTVPETKGLSLEEIESK 433 (436)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (436)
+++..++.+.+.||+++++.+|++++
T Consensus 425 ~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 425 CLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred HHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 88888888999999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=282.44 Aligned_cols=354 Identities=23% Similarity=0.259 Sum_probs=260.2
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
++..|.+.+| +|.|+++.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++
T Consensus 35 ~~~~~~~~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (406)
T PRK11551 35 GVAAPRMAQE--FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112 (406)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4567888887 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHH-HhcCC
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG-MWSLP 161 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~-~~~~~ 161 (436)
+|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+.. +||+.|++.++..++..+. ..++|
T Consensus 113 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (406)
T PRK11551 113 TGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA-AWRHIFYVGGVGPLLLVPLLMRWLP 191 (406)
T ss_pred HHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998877766 8999999987766655443 45678
Q ss_pred CChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCC---chhHH
Q 013779 162 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP---NLKAF 238 (436)
Q Consensus 162 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 238 (436)
|+|++...+ + + ++ +.+ ...+..++++ ..+..
T Consensus 192 ~~~~~~~~~-----------------------~-~--~~-~~~-------------------~~~~~~~~~~~~~~~~~~ 225 (406)
T PRK11551 192 ESRAFAQAA-----------------------G-A--GK-QRA-------------------PVLRALFGEGRATATLLL 225 (406)
T ss_pred CChhHHhcc-----------------------C-c--ch-hhh-------------------hhHHHHhhhhhhhHHHHH
Confidence 877532110 0 0 00 000 0000111111 11112
Q ss_pred HHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHH
Q 013779 239 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 318 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 318 (436)
...... ..........|.|.++++.|.+. .+.+.......++.+++.++.+++.||+++|+.+........++..
T Consensus 226 ~~~~~~----~~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 300 (406)
T PRK11551 226 WISYFF----TLIVLYFLLNWLPSLLVGQGLSR-SQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLA 300 (406)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHhCCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 211111 11222345667888888888776 6788888888999999999999999999999887765554444433
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCc-
Q 013779 319 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGA- 397 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~- 397 (436)
.+... .+.+. .....+..+....+..+...++..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..+.
T Consensus 301 ~~~~~-----~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~ 374 (406)
T PRK11551 301 ALAAA-----PSFAG-MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRST 374 (406)
T ss_pred HHHhc-----CcHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCch
Confidence 33221 22222 222233333333334455668889999999999999999999999999999999999987553
Q ss_pred chhHHHHHHHHHHHHhhee
Q 013779 398 ENIFLLFAAIAFLAVLFIV 416 (436)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ 416 (436)
...+.....+.+++.++.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 375 VGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=276.31 Aligned_cols=355 Identities=21% Similarity=0.238 Sum_probs=236.5
Q ss_pred ccccCcccCccccc---cchhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHH--
Q 013779 3 IAQSPELSGTTWFN---LSAVQLGL---VVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG-- 74 (436)
Q Consensus 3 ~~~~p~i~~~~~~~---~s~~~~g~---~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-- 74 (436)
+...|.+.+| ++ .+..+.+. ..+...++..++++++|+++||+||||++..+.++++++++++++++++.
T Consensus 42 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (432)
T PRK10406 42 SFCSLYFAHI--FFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETI 119 (432)
T ss_pred HHHHHHHHHH--hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhH
Confidence 4456677766 63 45555444 44455556669999999999999999999999999999999999988764
Q ss_pred ------HHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccc--------cccccch
Q 013779 75 ------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGWR 140 (436)
Q Consensus 75 ------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~--------~~~~~w~ 140 (436)
.++++|+++|++.|+.+|...+++.|++|+++|+++.++.+.+...|.++++.+...+. +.. |||
T Consensus 120 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-gWr 198 (432)
T PRK10406 120 GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREW-GWR 198 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-chH
Confidence 68999999999999999999999999999999999999999888888888887655432 134 999
Q ss_pred HHHhhhhHHHHHHHHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccc
Q 013779 141 YMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 220 (436)
Q Consensus 141 ~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (436)
++|++.++++++.......+||+|++..+ ++
T Consensus 199 ~~F~i~~~~~ll~~~~~~~~~e~~~~~~~-------------------------------------------------~~ 229 (432)
T PRK10406 199 IPFALGAVLAVVALWLRRQLDETSQQETR-------------------------------------------------AL 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHh-------------------------------------------------hh
Confidence 99999888877765555567776642000 00
Q ss_pred cccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013779 221 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 299 (436)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 299 (436)
++..++++++|+++.+...+...+ .....+.....|.|.++++ .+.+. .+.+.......+...++..+.|+++||
T Consensus 230 ~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~lp~~l~~~~g~s~-~~~~~~~~i~~~~~~i~~~~~G~l~Dr 305 (432)
T PRK10406 230 KEAGSLKGLWRNRRAFIMVLGFTA---AGSLCFYTFTTYMQKYLVNTAGMHA-NVASGIMTAALFVFMLIQPLIGALSDK 305 (432)
T ss_pred cccccHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001235566776655443332221 1112223466788888865 56665 567777777777788888999999999
Q ss_pred cCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHH
Q 013779 300 LGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG 379 (436)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 379 (436)
++||+.+.....+..+....+..... ..++....+....+.....+ ...+..+.+.+|.+|++.|+++.|+.+..++.
T Consensus 306 ~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~ 383 (432)
T PRK10406 306 IGRRTSMLCFGSLAALFTVPILSALQ-NVSSPYAAFGLVMCALLIVS-FYTSISGILKAEMFPAQVRALGVGLSYAVANA 383 (432)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCccchhhhHHHHHHHH
Confidence 99998765544433322221111111 11122222211211111111 12234557889999999999999999887665
Q ss_pred -HHHHHHHhhHHHHHHhC-cchhHHHHHHHHHHHHhhee
Q 013779 380 -SNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIV 416 (436)
Q Consensus 380 -g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 416 (436)
.+...|.+.+ +.+..| +...++..++..+++.+..+
T Consensus 384 ~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 384 LFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 3445777777 445556 44455555555555554433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=275.16 Aligned_cols=367 Identities=17% Similarity=0.209 Sum_probs=255.3
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
++++.|.++++ +|+|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+
T Consensus 31 ~~~~~~~l~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (405)
T TIGR00891 31 VALVLAEVAGE--FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARL 108 (405)
T ss_pred HHHHHHHHHHH--hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 35677888887 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccc-cchHHHhhhhHHHHHHHHHHhcC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMWSL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-~w~~~f~~~~~~~~~~~~~~~~~ 160 (436)
+.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.+++.+.+... +||+.|++.++..++..+....+
T Consensus 109 l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 188 (405)
T TIGR00891 109 VIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNI 188 (405)
T ss_pred HHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988776651 49999998777666666666678
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
||++++...++ ++++..+..++..+.++.. ... .++.....++.. ++.+....
T Consensus 189 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~~~~~--~~~~~~~~ 241 (405)
T TIGR00891 189 PEAEDWKEKHA---------GKALVRTMVDILYGGEHRI---ANI-------------VMTLAAAMVQSA--GKRWPTFV 241 (405)
T ss_pred CCChhHHHHhh---------hhhhhhhHHHHHhccchhh---hhh-------------hhhhhHHhhhhh--hhhhHHHH
Confidence 88775432110 0000000000000000000 000 000000011111 11111111
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 319 (436)
..................+.|.++++ .+.+. .+.+.......++.+++.++.+++.||++||+.+..+.....+....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 320 (405)
T TIGR00891 242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSP-HTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIP 320 (405)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 11111111111112344556666654 56665 77888888899999999999999999999999877666544332222
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC-cc
Q 013779 320 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AE 398 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~ 398 (436)
... . ......+.......+.......+....++.|.+|+++|+++.|+.+...+++..++|.+.|.+.|..| |.
T Consensus 321 ~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~ 395 (405)
T TIGR00891 321 VFA----I-GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYG 395 (405)
T ss_pred HHH----h-CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 211 1 12222222222222333333444556788999999999999999999999999999999999999998 65
Q ss_pred hhHHH
Q 013779 399 NIFLL 403 (436)
Q Consensus 399 ~~~~~ 403 (436)
..+..
T Consensus 396 ~~~~~ 400 (405)
T TIGR00891 396 TALAS 400 (405)
T ss_pred hhHHh
Confidence 55443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=272.65 Aligned_cols=375 Identities=15% Similarity=0.120 Sum_probs=251.0
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc----hhHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA----PGLGVLLV 78 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~ 78 (436)
++.+|.+.++ |+|+++.|+..+.+.+++++++++.|+++||+|||+++..+.++.+++.+++++. .+++.+++
T Consensus 49 ~~~~p~l~~~---g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 125 (452)
T PRK11273 49 ALAMPYLVEQ---GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 125 (452)
T ss_pred HHhhHHHHHc---CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHH
Confidence 3567777642 8999999999999999999999999999999999999999999999999888775 37888999
Q ss_pred HHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHH-HHHHHhhccccccccchHHHhhhhHHHHHHHH-H
Q 013779 79 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGIL-LGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-G 156 (436)
Q Consensus 79 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~-~ 156 (436)
.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+++++..+.... +||+.|++.++++++..+ .
T Consensus 126 ~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-gw~~~f~i~~~~~~~~~~l~ 204 (452)
T PRK11273 126 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN-DWHAALYMPAFAAILVALFA 204 (452)
T ss_pred HHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888999999999999999999999999874 4555443333333 899999998887776544 4
Q ss_pred HhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhcccccccccc-chhhccCCch
Q 013779 157 MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS-FLEVFQGPNL 235 (436)
Q Consensus 157 ~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 235 (436)
.+++||+|+... .++. ++.+ ++.+.+. .+++.++.+.+.. .+.++|++.+
T Consensus 205 ~~~~~~~~~~~~---------~~~~-~~~~-------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 255 (452)
T PRK11273 205 FAMMRDTPQSCG---------LPPI-EEYK-------NDYPDDY------------NEKHEQELTAKQIFMQYVLPNKLL 255 (452)
T ss_pred HHHccCCHhhcC---------CCCh-hhhh-------hcccccc------------ccccCCCccHHHHHHHHHHcChHH
Confidence 456788765200 0000 0000 0000000 0000000000011 1235677777
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcC--CccEeehh-hH
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG--RRPLLIGG-VC 311 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~-~~ 311 (436)
+...+...+...... ....|.|.++++ .+++. .+.+.......++.+++.++.|+++||++ ||+..... ..
T Consensus 256 ~~~~l~~~~~~~~~~----~~~~~~P~~l~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~ 330 (452)
T PRK11273 256 WYIAIANVFVYLLRY----GILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 330 (452)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 766554444443332 456788998877 46665 67777788888999999999999999984 34322211 11
Q ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHH-HHHhhHH
Q 013779 312 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI-VTFAFSP 390 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~~~ 390 (436)
+..++...+.. ....+........ ...+.......+....+..|.+|++.||++.|+.+...++|+.+ +|.+.|.
T Consensus 331 l~~~~~~~~~~---~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~ 406 (452)
T PRK11273 331 LVTIATIVYWL---NPAGNPTVDMACM-IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 406 (452)
T ss_pred HHHHHHHHHHH---hcccChHHHHHHH-HHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Confidence 11222211111 1111222222222 22222111212222345678999999999999999998888765 7999999
Q ss_pred HHHHhCcchhHHHHHHHHHHHHhheeEec
Q 013779 391 LKELLGAENIFLLFAAIAFLAVLFIVRTV 419 (436)
Q Consensus 391 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 419 (436)
+.|..|++..|++.+++++++.+....+.
T Consensus 407 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 407 TVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888777766554433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=280.46 Aligned_cols=372 Identities=16% Similarity=0.111 Sum_probs=277.3
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhc-----cchhHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA-----YAPGLGVLL 77 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~l~ 77 (436)
.+.+|.+.++ ++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+ ..++++.++
T Consensus 37 ~~~~~~~~~~--~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (417)
T PRK10489 37 GVAVPVQIQM--MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIY 114 (417)
T ss_pred HHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 4567777777 888999999999999999999999999999999999999888887777665543 256789999
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH
Q 013779 78 VGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 157 (436)
Q Consensus 78 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~ 157 (436)
+.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+.. +|++.|++.++..++..+..
T Consensus 115 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 115 LLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-GVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHH
Confidence 99999999999888999999999999999999999999999999999999999988776 89999998887777766666
Q ss_pred hcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhH
Q 013779 158 WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA 237 (436)
Q Consensus 158 ~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (436)
+.+||+++. + .+ ++. . .++....++..+++|.++.
T Consensus 194 ~~l~~~~~~-------------~--------------~~--~~~---~-------------~~~~~~~~~~~~~~~~~~~ 228 (417)
T PRK10489 194 LRLPALPPP-------------P--------------QP--REH---P-------------LRSLLAGFRFLLASPVVGG 228 (417)
T ss_pred HhCCCCCCC-------------C--------------cc--ccc---c-------------hHHHHHHHHHHHcChHHHH
Confidence 667764320 0 00 000 0 0000112344566666554
Q ss_pred HHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHH
Q 013779 238 FIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 316 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 316 (436)
..+...+... ......+.|.+.++ .+.+. ...+.......++.+++.++.+++.||.++++.+..+..+..++
T Consensus 229 ~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~ 302 (417)
T PRK10489 229 IALLGGLLTM-----ASAVRVLYPALADEVWQMGA-AQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLA 302 (417)
T ss_pred HHHHHHHHHH-----HHhHHHhhHHHHHhccCCCh-hHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHH
Confidence 4433222211 12345577888887 66665 67888888899999999999999999877776666666555555
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC
Q 013779 317 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 396 (436)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 396 (436)
..++.. ..+........+..+.......+...+++.|..|++.||+++|+.+...++|..++|.+.|.+.+..|
T Consensus 303 ~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g 376 (417)
T PRK10489 303 VGLFGL------MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT 376 (417)
T ss_pred HHHHHc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence 444332 12222222222233333333334555788899999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhheeEecccCCCCCHHHHHhhh
Q 013779 397 AENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 434 (436)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (436)
+...+...+++.++..++.....++.|+++.+|.+++.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 377 PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 88888888877777666666677888888777777654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=267.40 Aligned_cols=343 Identities=19% Similarity=0.230 Sum_probs=254.2
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 83 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 83 (436)
+.+|.+.+| +|.|+++.|+..+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+++
T Consensus 41 ~~l~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 118 (394)
T PRK10213 41 SLLTPMAQD--LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACL 118 (394)
T ss_pred hhHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 467888888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cCCC
Q 013779 84 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPP 162 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~e 162 (436)
|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+.+.. +||+.|++.++++++..+... ..||
T Consensus 119 G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 119 GLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GWRNVFNAAAVMGVLCIFWIIKSLPS 197 (394)
T ss_pred HHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999998887 999999998877766544333 3555
Q ss_pred ChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHH
Q 013779 163 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG 242 (436)
Q Consensus 163 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (436)
+|+. +++...+.++.+|+|.++...+..
T Consensus 198 ~~~~----------------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~ 225 (394)
T PRK10213 198 LPGE----------------------------------------------------PSHQKQNTFRLLQRPGVMAGMIAI 225 (394)
T ss_pred CCcc----------------------------------------------------cccchhHHHHHhcCHHHHHHHHHH
Confidence 3310 000001234566777766554433
Q ss_pred HHHHHHHHhChhhHHhc-hHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHH
Q 013779 243 GLVLFQQITGQPSVLYY-AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 321 (436)
Q Consensus 243 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 321 (436)
.+...... ....+ .|.+.++.|.+. ...+......+++.+++.++.+++.||.+ |+.+.....+..+...++.
T Consensus 226 ~~~~~~~~----~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~ 299 (394)
T PRK10213 226 FMSFAGQF----AFFTYIRPVYMNLAGFGV-DGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLT 299 (394)
T ss_pred HHHHHHHH----HHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHH
Confidence 33332222 23334 466777778776 67788888888999999999999999954 4443333333233322222
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhH
Q 013779 322 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF 401 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 401 (436)
.. .++.+.......+. +.......+...+.+.+..| +++++..+......++|..+||.+.|.+.|..|+...+
T Consensus 300 ~~----~~~~~~~~~~~~l~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~ 373 (394)
T PRK10213 300 LW----GSDKIVATGVAIIW-GLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPL 373 (394)
T ss_pred HH----hhhHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHH
Confidence 21 12233333333333 33333344444456777777 55667778888888999999999999999999988877
Q ss_pred HHHHHHHHHHHh
Q 013779 402 LLFAAIAFLAVL 413 (436)
Q Consensus 402 ~~~~~~~~~~~~ 413 (436)
...+.+..+..+
T Consensus 374 ~~~~~~~~~~~~ 385 (394)
T PRK10213 374 MLSGTLMLLTAL 385 (394)
T ss_pred HHHHHHHHHHHH
Confidence 777666555544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=269.26 Aligned_cols=354 Identities=17% Similarity=0.167 Sum_probs=237.9
Q ss_pred ccchhHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHH--------HHHHHHHH
Q 013779 16 NLSAVQLGLVV-----SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG--------VLLVGRLL 82 (436)
Q Consensus 16 ~~s~~~~g~~~-----s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l 82 (436)
+.++. .+++. ++..++..+++++.|+++||+|||+++..+.+++++++++++++++++ .++++|++
T Consensus 56 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 134 (438)
T PRK09952 56 QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAI 134 (438)
T ss_pred CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 55655 45543 355677889999999999999999999999999999999999999987 58899999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccc--------ccccchHHHhhhhHHHHHHH
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN--------AVGGWRYMYGLSAPLALLMG 154 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~--------~~~~w~~~f~~~~~~~~~~~ 154 (436)
+|++.|...+....++.|++|+++|++..+..+.+..+|.+++..+...+.. .. +||++|++.+++.++..
T Consensus 135 ~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~-gWr~~f~~~~~~~l~~~ 213 (438)
T PRK09952 135 QGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSW-GWRIPFLFSIVLVLIAL 213 (438)
T ss_pred HHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhcc-ChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877665432 34 99999999888776655
Q ss_pred HHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCc
Q 013779 155 IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 234 (436)
Q Consensus 155 ~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (436)
......||+|+|...++++ + +.+++....+.++++++
T Consensus 214 ~l~~~~~es~~~~~~~~~~----------------------------------------~---~~~~~~~~~~~l~~~~~ 250 (438)
T PRK09952 214 WVRNGMEESAEFEQQQHEQ----------------------------------------A---AAKKRIPVIEALLRHPG 250 (438)
T ss_pred HHHHhCCCChhHHHHHhhc----------------------------------------c---cccccCCHHHHHHHchH
Confidence 5555678888653221000 0 00000001112444554
Q ss_pred hhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHH
Q 013779 235 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 313 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 313 (436)
.+....... +...........|.|.++++ .+.+. ..........++..+++.++.|+++||++||+.+..+..+.
T Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~~~y~~~~~g~s~-~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~ 326 (438)
T PRK09952 251 AFLKIIALR---LCELLTMYIVTAFALNYSTQNLGLPR-ELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIG 326 (438)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 443322111 11122223455677777654 55554 33444455566777888899999999999999877665544
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHH-HHHHHHHHHhhHHHH
Q 013779 314 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN-FGSNAIVTFAFSPLK 392 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~~~~~~~~~~ 392 (436)
.++...+.... ...+....+....+..+.......+..+++..|.+|++.|+++.|+.+... .+++.++|.+.+.+.
T Consensus 327 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~ 404 (438)
T PRK09952 327 TLSAFPFFMAL--EAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALV 404 (438)
T ss_pred HHHHHHHHHHH--HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332222111 112222222222222222222233455688999999999999999976664 488999999999998
Q ss_pred HHhC--cchhHHHHHHHHHHHHhheeEeccc
Q 013779 393 ELLG--AENIFLLFAAIAFLAVLFIVRTVPE 421 (436)
Q Consensus 393 ~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (436)
+..+ |...+...+++.+++.+..+ ..++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~ 434 (438)
T PRK09952 405 TYFGGSWHSVAIYLLAGCLISAMTAL-LMKD 434 (438)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHH-Hccc
Confidence 8653 66667766666666655443 3344
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=268.57 Aligned_cols=348 Identities=15% Similarity=0.171 Sum_probs=252.0
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+.+.+|.+++| +|.|.++.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.+++++++|++.+++.|+
T Consensus 22 ~~~~l~~~~~~--~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~ 99 (382)
T PRK10091 22 IMGVLTELAHD--VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRL 99 (382)
T ss_pred HHhChHHHHHH--cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 35778999988 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-hcC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~ 160 (436)
++|++.+...+....++.|++|+++|++++++...+..+|..+++++++.+.+.. +||+.|++.++..++..+.. +.+
T Consensus 100 l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~l 178 (382)
T PRK10091 100 VSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-SWRYTFLLIAVFNIAVLASIYFWV 178 (382)
T ss_pred HHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-cHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999988988999999999999999999999999999999999999988877 99999999888777665433 456
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
||.++ + ++ . +. + ...+.+|++..+....
T Consensus 179 p~~~~-------------~----------------~~-~-----~~----------------~-~~~~~~~~~~~~~~~~ 206 (382)
T PRK10091 179 PDIRD-------------E----------------AK-G-----GL----------------R-EQFHFLRSPAPWLIFA 206 (382)
T ss_pred CCCCc-------------c----------------cc-c-----CH----------------H-HHHHHhcChHHHHHHH
Confidence 66431 0 00 0 00 0 0012345554444332
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 319 (436)
...+.... ......|.+.++++ .|.++ .+.+.......++.+++.++.+++.||+++|+.+..+..+..++.++
T Consensus 207 ~~~~~~~~----~~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~ 281 (382)
T PRK10091 207 ATMFGNAG----VFAWFSYIKPYMMFISGFSE-TSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLM 281 (382)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHH
Confidence 22221111 11233344555554 66665 78888899999999999999999999999999888777666666544
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH-hCcc
Q 013779 320 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGAE 398 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~g~~ 398 (436)
+.... +..+.......+...+......+.......+..|++.++.+ ..+...++|..+||.+.|.+.|. .+|+
T Consensus 282 ~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~ 355 (382)
T PRK10091 282 LFFFG----GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYN 355 (382)
T ss_pred HHHHH----hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcc
Confidence 43221 12222222222222222222222332344455455555544 34667889999999999999996 5788
Q ss_pred hhHHHHHHHHHHHHhhe
Q 013779 399 NIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 399 ~~~~~~~~~~~~~~~~~ 415 (436)
..+...+++..+.....
T Consensus 356 ~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 356 YVALPAALLSFAAMSSL 372 (382)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 88887766666555433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=273.86 Aligned_cols=367 Identities=15% Similarity=0.109 Sum_probs=256.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHhhhhhhhh
Q 013779 14 WFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA--PGLGVLLVGRLLYGLGIGLAM 91 (436)
Q Consensus 14 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~ 91 (436)
+++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 489999999999999999999999999999999999999999999999998887554 568899999999999999999
Q ss_pred hhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cCCCChHHHHHH
Q 013779 92 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPSPRWLLLR 170 (436)
Q Consensus 92 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~es~~~l~~~ 170 (436)
|....++.|++|+++|++++++...+..+|.++++++++.+.+...+||+.|++.++++++..+.++ +.+|+|+.
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~---- 225 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI---- 225 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc----
Confidence 9999999999999999999999999999999999999999887623899999999998887766555 45565531
Q ss_pred hhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHHHHH
Q 013779 171 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 250 (436)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (436)
+. ..+ +++.+. .+ +..+++.++++.+..++++++++..+...+..+....
T Consensus 226 ----~~-~~~-~~~~~~-i~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 275 (465)
T TIGR00894 226 ----HP-CIS-KFEKKY-IN--------------------SSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFW--- 275 (465)
T ss_pred ----CC-CCC-HHHHHH-HH--------------------hhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHH---
Confidence 00 000 000000 00 0000000111123357788888877766644433333
Q ss_pred hChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehh---hHHHHHHH---HHHHHH
Q 013779 251 TGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGG---VCGIALSL---LLLSAY 323 (436)
Q Consensus 251 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~---~~~~~~~~---~~~~~~ 323 (436)
....+..|.|.++++ .+.+. .+.+.......++.+++.++.|+++||+++|+..... .....++. ......
T Consensus 276 -~~~~~~~~lp~~l~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (465)
T TIGR00894 276 -LYTILPTYLPTFISWVLRVSG-KENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYA 353 (465)
T ss_pred -HHHHHHHHHHHHHHHHhCcCh-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577788988866 56665 7888888888999999999999999998655432211 11111111 111111
Q ss_pred HHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHh---Ccchh
Q 013779 324 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL---GAENI 400 (436)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~---g~~~~ 400 (436)
...........+....+. +.......+..+....|..| +.+|.+.|+.+..+.+++.++|.+.|.+.+.. +|...
T Consensus 354 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~ 431 (465)
T TIGR00894 354 LPYLSAAFYLTIIILTLA-NAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIV 431 (465)
T ss_pred HHHcCCchHHHHHHHHHH-HHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHH
Confidence 111111222222222222 22222222333345567766 58999999999999999999999999887653 36778
Q ss_pred HHHHHHHHHHHHhheeEe
Q 013779 401 FLLFAAIAFLAVLFIVRT 418 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~ 418 (436)
|.+.++..+++.++....
T Consensus 432 f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 432 FLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHHHHHHHHHHHHHeeee
Confidence 888888888877655443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=271.09 Aligned_cols=341 Identities=21% Similarity=0.286 Sum_probs=225.7
Q ss_pred cccccCcccCccccccchhHHHHHH-HHH-----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHH-
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVV-SGS-----LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG- 74 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~-s~~-----~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~- 74 (436)
+++..|.+.+| ++.++.+.+.+. +.. .++..+++++.|+++||+||||.++.+.+++++++++++++++++
T Consensus 34 ~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~ 111 (434)
T PRK15075 34 FGFYATAIAKT--FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYAT 111 (434)
T ss_pred HHHHHHHHHHH--hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45677888888 899888765443 332 233357899999999999999999999999999999999999987
Q ss_pred -------HHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccc--------cccccc
Q 013779 75 -------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGW 139 (436)
Q Consensus 75 -------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~--------~~~~~w 139 (436)
.++++|+++|++.+...+....++.|++|+++|++++++...+.++|..+++.+++.+. +.. ||
T Consensus 112 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~-gW 190 (434)
T PRK15075 112 IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEW-GW 190 (434)
T ss_pred HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-ch
Confidence 46899999999999999999999999999999999999999988888888887777652 344 99
Q ss_pred hHHHhhhhHHHHHHHHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhcccc
Q 013779 140 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 219 (436)
Q Consensus 140 ~~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (436)
|++|++......+........||++++... ++ +
T Consensus 191 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~--------------------------------------------~~---~ 223 (434)
T PRK15075 191 RIPFLIGCLIVPFIFLIRRSLEETEEFLAR--------------------------------------------KH---R 223 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHh--------------------------------------------hh---c
Confidence 999997554432222222233333211000 00 0
Q ss_pred ccccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013779 220 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVD 298 (436)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 298 (436)
.+.+..+++..++++.+ ... ....+.....+.....|.|.++++ .|.+. .+.++......++.+++.++.|+++|
T Consensus 224 ~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~D 299 (434)
T PRK15075 224 PSMREIFRSLAANWRIV--LAG-MLMVAMTTVSFYLITVYTPTFGKTVLHLSA-ADSLLVTLCVGVSNFIWLPIGGALSD 299 (434)
T ss_pred cccccHHHHHHHhHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111222222222 111 122222233344577889999877 57765 56777788888899999999999999
Q ss_pred hcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHH
Q 013779 299 DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF 378 (436)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 378 (436)
|++||+....+..+..+........ .................+.......+..+.+..|.+|++.|+++.++.+....
T Consensus 300 r~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~ 377 (434)
T PRK15075 300 RIGRRPVLIAFTVLAILTAYPALSW--LVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLAT 377 (434)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHH--HHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHH
Confidence 9999987765544332221111111 11122221121111111122223334445778999999999999999765554
Q ss_pred -HHHHHHHHhhHHHHHHhCcc
Q 013779 379 -GSNAIVTFAFSPLKELLGAE 398 (436)
Q Consensus 379 -~g~~~~~~~~~~~~~~~g~~ 398 (436)
+++.++|.+.|.+.|..|+.
T Consensus 378 ~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 378 AIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHhhhHHHHHHHHHHhcCCc
Confidence 45788999999999998853
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=242.64 Aligned_cols=400 Identities=19% Similarity=0.226 Sum_probs=294.8
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 83 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 83 (436)
-+.|.+... .|.+..|..++......|..+++..+|.++|++|||+.+.+..+..++...+.+.++|+..+.+.|.+.
T Consensus 99 ~i~~~l~~~--w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~ 176 (528)
T KOG0253|consen 99 LILPALDEV--WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALW 176 (528)
T ss_pred HHHHHHHhh--hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHH
Confidence 456667766 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCC
Q 013779 84 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS 163 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es 163 (436)
|+|.|+ .|...++-.|..|..+|...+-.. +.+.+|.++...++....... ||||.....+.+..+.+...+++|||
T Consensus 177 ~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~-gwr~~l~~~~~pl~~~a~f~~w~~ES 253 (528)
T KOG0253|consen 177 GFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF-GWRYLLFTSSTPLMFAARFLVWVYES 253 (528)
T ss_pred hccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHhHHHHHHHHHhhcccC
Confidence 999998 899999999999999998877777 999999999999998888888 99999888888888888888899999
Q ss_pred hHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcch------h-hhHHHHHHh--hhhccccccccccchhhccCCc
Q 013779 164 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLS------E-RQIEDTLVS--LKSSYTDEKSEGSFLEVFQGPN 234 (436)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 234 (436)
|||+.. +++++++.+.++++.+.|...-.. . ++.+++... ..+....++...+..+++. |.
T Consensus 254 pRf~~~---------~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~ 323 (528)
T KOG0253|consen 254 PRFYLA---------KGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PK 323 (528)
T ss_pred cchhhh---------cCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hH
Confidence 999887 566777777777665544332111 1 111111111 1111122334445566665 33
Q ss_pred hhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcC--------------------CCcchhhHHHHHHHHHHHHHHHHHHH
Q 013779 235 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAG--------------------FSAAADATRVSVVIGVFKLVMTWIAV 294 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~g 294 (436)
+++..+.....++.+-..++........+.+... .+. .....-..+.......|.++.+
T Consensus 324 lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~-~~dYrdllitslaefPGlLIt~ 402 (528)
T KOG0253|consen 324 LRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSV-AKDYRDLLITSLAEFPGLLITG 402 (528)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccc-hhHHHHHHHHHHhhCCchhHHH
Confidence 4443333333343333222233333332222211 111 2334455667788999999999
Q ss_pred HHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHH
Q 013779 295 AKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 374 (436)
Q Consensus 295 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 374 (436)
++.||+|||+.+...+++++++.+++... ..........+....+...++. ..+.|..|++|+..|+++.|.++
T Consensus 403 ~iverlGRKkTMal~l~~f~iflfll~~c-----~~rn~~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcS 476 (528)
T KOG0253|consen 403 VIVERLGRKKTMALSLILFGIFLFLLTTC-----KTRNAYTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCS 476 (528)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhh
Confidence 99999999999988888877776665532 2333334444455555555665 55699999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhheeEecccCCCCCH
Q 013779 375 LTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSL 427 (436)
Q Consensus 375 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (436)
.+..+|+++.|.+. +........+..+.+.+++++++...++--|+|+|+.
T Consensus 477 smaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 477 SMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 99999999999987 4444455567778888888888877777778887753
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=264.33 Aligned_cols=344 Identities=18% Similarity=0.144 Sum_probs=245.0
Q ss_pred ccccCc-ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh---cc-----chhH
Q 013779 3 IAQSPE-LSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AY-----APGL 73 (436)
Q Consensus 3 ~~~~p~-i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~-----~~~~ 73 (436)
.|.+|. +++| +|.|+.+.|++.+++.+++.++++++|+++||+||||++..+.+...++.+.. +. .+++
T Consensus 35 ~p~l~~~l~~~--lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (392)
T PRK12382 35 LPVIPLFVHHD--LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKF 112 (392)
T ss_pred hhhhhHHHHHh--cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHH
Confidence 456665 4566 99999999999999999999999999999999999999999888777665432 22 3578
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHH
Q 013779 74 GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 153 (436)
Q Consensus 74 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~ 153 (436)
+.+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+.+.|..++|++++.+.+.. +||..+.+..+..++.
T Consensus 113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~ 191 (392)
T PRK12382 113 ALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF-GFAALALTTMVLPLLA 191 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888777 9998877655544433
Q ss_pred HHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCC
Q 013779 154 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 233 (436)
Q Consensus 154 ~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (436)
.......||+++ ++ + ++.+.++..|
T Consensus 192 ~~~~~~~~~~~~-----------------------------~~--~----------------------~~~~~~~~~~-- 216 (392)
T PRK12382 192 WAFNGTVRKVPA-----------------------------HA--G----------------------ERPSLWSVVG-- 216 (392)
T ss_pred HHHHHhccCCCC-----------------------------Cc--c----------------------cCchHHHHHH--
Confidence 322222222110 00 0 0000111111
Q ss_pred chhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHH
Q 013779 234 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 313 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 313 (436)
..+...+...+... .......+.+.++++.+.+ ..+.......++.+++.++.+++.||+++|+.+..+..+.
T Consensus 217 ~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~ 289 (392)
T PRK12382 217 LIWKPGLGLALQGV----GFAVIGTFVSLYFASKGWA---MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVE 289 (392)
T ss_pred HHHHhHHHHHHHHH----HHhHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHH
Confidence 01111111111111 1123455666777776654 3455566677788899999999999999999988877776
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH
Q 013779 314 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 393 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 393 (436)
.++..++... ++.+.......+...+. ....+.......|..|+++|+++.|+.+....+|..++|.+.|.+.|
T Consensus 290 ~~~~~~~~~~-----~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 290 TVGLLLLWLA-----PTAWVALAGAALTGAGC-SLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred HHHHHHHHHc-----ccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665544321 22232222232322222 22334444667788899999999999999999999999999999999
Q ss_pred HhCcchhHHHHHHHHHHHHhheeE
Q 013779 394 LLGAENIFLLFAAIAFLAVLFIVR 417 (436)
Q Consensus 394 ~~g~~~~~~~~~~~~~~~~~~~~~ 417 (436)
..||+..|...+++.+++.++...
T Consensus 364 ~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 364 SFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999988888777665543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=269.83 Aligned_cols=344 Identities=22% Similarity=0.182 Sum_probs=246.7
Q ss_pred ccccCc-ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc--------hhH
Q 013779 3 IAQSPE-LSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA--------PGL 73 (436)
Q Consensus 3 ~~~~p~-i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~ 73 (436)
.+.+|. +.++ +|.|+.+.|++.+++.+++.+++++.|+++||+||||++..+.++.+++.+.+.++ .++
T Consensus 35 ~~~l~~~i~~~--~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (399)
T PRK05122 35 LAVLPGYVHDQ--LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSL 112 (399)
T ss_pred HHHHHHHHHHh--cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHH
Confidence 456665 4566 89999999999999999999999999999999999999999999888877665543 257
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHH
Q 013779 74 GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 153 (436)
Q Consensus 74 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~ 153 (436)
+.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+.+.. +||..+++..+..++.
T Consensus 113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~~~~~~~~~~~~ 191 (399)
T PRK05122 113 LLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG-GLAGLGLLIMLLALLG 191 (399)
T ss_pred HHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999988877 9999988776665544
Q ss_pred HHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCC
Q 013779 154 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 233 (436)
Q Consensus 154 ~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (436)
.+.....|++++ + + +++.++++.+++
T Consensus 192 ~~~~~~~~~~~~-------------~-------------------~---------------------~~~~~~~~~~~~- 217 (399)
T PRK05122 192 LLLARPRPAVPP-------------V-------------------K---------------------GERLPFRRVLGR- 217 (399)
T ss_pred HHHHhcCCCCCC-------------C-------------------C---------------------ccchhHHHHHHH-
Confidence 333332232110 0 0 000011111111
Q ss_pred chhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHH
Q 013779 234 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 313 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 313 (436)
.+.......+..+. +.....+.+.++++.+.+ ..+.......++.+++.++.+++.||+++|+.+..+..+.
T Consensus 218 -~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 289 (399)
T PRK05122 218 -VWPYGMGLALASIG----FGTIATFITLYYAARGWD---GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVE 289 (399)
T ss_pred -HHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccc---cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11111111111111 123445666667666553 3455566777888999999999999999998877776666
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH
Q 013779 314 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 393 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 393 (436)
.++...+... ++.+..+....+...+.+ ...+.......|..|+++|+++.|+.+....+|..++|.+.|.+.+
T Consensus 290 ~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 363 (399)
T PRK05122 290 ILGLLLLWLA-----PSPWMALIGAALTGFGFS-LVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS 363 (399)
T ss_pred HHHHHHHHHh-----ccHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544321 222333322222322222 2333444566788899999999999999999999999999999999
Q ss_pred HhCcchhHHHHHHHHHHHHhheeE
Q 013779 394 LLGAENIFLLFAAIAFLAVLFIVR 417 (436)
Q Consensus 394 ~~g~~~~~~~~~~~~~~~~~~~~~ 417 (436)
..|++..++..+++.+++.++...
T Consensus 364 ~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 364 WFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888887777665443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=260.93 Aligned_cols=343 Identities=16% Similarity=0.157 Sum_probs=252.7
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+.+.+|.+.++ +|.|+.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|+
T Consensus 25 ~~~~lp~~~~~--~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (381)
T PRK03633 25 LNTLVPLWLAQ--EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRF 102 (381)
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45788999988 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~ 160 (436)
++|++.+...|...+.+.+..++++|++++++...+.++|..+|+.+++.+.+.. .|+..+. .+..........+ ..
T Consensus 103 l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 180 (381)
T PRK03633 103 VAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL-MSVLPWV-TGLVLAAILPLLFTRI 180 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cchHHHH-HHHHHHHHHHHHHhcc
Confidence 9999999999988888889999999999999999999999999999999887653 2333322 2222211111111 11
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
+|+++ ++++..+.++.+|++.++....
T Consensus 181 ~~~~~-----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 207 (381)
T PRK03633 181 LNQQA-----------------------------------------------------ENHDSTSIWPMLKLRQARLGVN 207 (381)
T ss_pred cCCCC-----------------------------------------------------CCCCCCCHHHHHHhcchHHHHH
Confidence 11000 0000113345667776664332
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 320 (436)
......... .....+.|.++++.+.+. ...+.......++.+++.+..+++.||+++|+.+..+.....++...+
T Consensus 208 ~~~~~~~~~----~~~~~~lp~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 282 (381)
T PRK03633 208 GCIISGIVL----GSLYGLMPLYLNHQGMSD-ASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM 282 (381)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 222222211 234456788888877776 677888888889999999999999999999988777766665554433
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchh
Q 013779 321 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENI 400 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 400 (436)
.. ... ......+. +.......|...+...|..|+++++...+..+...++|..++|.+.|.+.|..|+...
T Consensus 283 ~~-------~~~-~~~~~~l~-g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~ 353 (381)
T PRK03633 283 LS-------QAA-MAPALFIL-GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLL 353 (381)
T ss_pred hh-------hHH-HHHHHHHH-HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 21 111 11112222 2222334466667788888888888888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhe
Q 013779 401 FLLFAAIAFLAVLFI 415 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~ 415 (436)
|.+.+.+.++..+..
T Consensus 354 f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 354 FIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888777665543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=265.01 Aligned_cols=365 Identities=21% Similarity=0.234 Sum_probs=275.5
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHHhhhhhhhh
Q 013779 14 WFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAM 91 (436)
Q Consensus 14 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 91 (436)
++++|+.|.+++.+.+..|+.+++++.|+++||+|.|+++..+.++.++++++.+.+. +++.+++.|++||++.|..+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence 4899999999999999999999999999999999999999999999999999999875 45688999999999999999
Q ss_pred hhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cCCCChHHHHHH
Q 013779 92 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPSPRWLLLR 170 (436)
Q Consensus 92 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~es~~~l~~~ 170 (436)
|+...+.++|.|++||++..++...+..+|.+++.+++|.+.+...||+++|++.+..+++..++++ +..|+|..
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---- 222 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---- 222 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc----
Confidence 9999999999999999999999999999999999999999999844999999999999999877775 55566640
Q ss_pred hhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHHHHH
Q 013779 171 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 250 (436)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (436)
+...+++|.+...+...++..+++.+.+++++++++.+|...++.+ ...
T Consensus 223 ---------------------------h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f----~~~ 271 (466)
T KOG2532|consen 223 ---------------------------HPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAF----GGN 271 (466)
T ss_pred ---------------------------CCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHH----HHH
Confidence 1111122222222221222222225778999999998887775444 444
Q ss_pred hChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcc---------EeehhhHHHHHHHHHH
Q 013779 251 TGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP---------LLIGGVCGIALSLLLL 320 (436)
Q Consensus 251 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~---------~~~~~~~~~~~~~~~~ 320 (436)
.+...+..|.|.|+++ ++++. .+.|++.++..+...+..+++|.++||+.+|. .-.++....+++++.+
T Consensus 272 ~~~~~l~~y~PtY~~~VL~f~v-~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l 350 (466)
T KOG2532|consen 272 WGFYLLLTYLPTYLKEVLGFDV-RETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVL 350 (466)
T ss_pred HHHHHHHHHhhHHHHHHhCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHee
Confidence 4445688999999998 45554 89999999999999999999999999987641 1122333333333333
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH---HhCc
Q 013779 321 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---LLGA 397 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~g~ 397 (436)
... .....+..+.++.+..+..+.... -.+.-..+..| ++.+..+|+.+.+..+.+.++|.+.|.+.. ...|
T Consensus 351 ~~~---~~~~~~~a~~~l~~~~~~~g~~~~-Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW 425 (466)
T KOG2532|consen 351 AFT---SDEHRLLAVILLTIAIGLSGFNIS-GFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEW 425 (466)
T ss_pred eec---CCCcchHHHHHHHHHHHHcccchh-hhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHH
Confidence 322 112232333333333333322222 22233334344 889999999999999999999999999983 3469
Q ss_pred chhHHHHHHHHHHHHhheeEec
Q 013779 398 ENIFLLFAAIAFLAVLFIVRTV 419 (436)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~ 419 (436)
+.+|++.+++.+++.++..++-
T Consensus 426 ~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 426 RIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHhchheeEee
Confidence 9999999999999987655553
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=263.99 Aligned_cols=351 Identities=14% Similarity=0.156 Sum_probs=256.0
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+++.+|++.++ +|+|+++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.++++++++++.+++.|+
T Consensus 26 ~g~~~~~i~~~--~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 103 (394)
T PRK03699 26 TGMVMGPIAEY--FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMF 103 (394)
T ss_pred HhhhhHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 45678999988 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 161 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 161 (436)
++|++.+...+...+++.|++|+++|+++++..+...++|..++|.+.+.+.....+||+.|.+.+++.++..+..++ .
T Consensus 104 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~ 182 (394)
T PRK03699 104 VLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-S 182 (394)
T ss_pred HHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-c
Confidence 999999999999999999999999999999999999999999999988876654339999999988877666544432 2
Q ss_pred CChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHH
Q 013779 162 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 241 (436)
Q Consensus 162 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (436)
+.|+. + ++++ + + +++. .++. .++.++...+.
T Consensus 183 ~~p~~------------~--------------~~~~-~--------------~---~~~~----~~~~-~~~~~~~~~~~ 213 (394)
T PRK03699 183 EFPAL------------G--------------KHAP-K--------------A---DKPV----AKEK-WGIGVLFLAIA 213 (394)
T ss_pred CCccc------------c--------------ccCc-c--------------c---cCcc----cccc-CChHHHHHHHH
Confidence 21210 0 0000 0 0 0000 0000 12333333322
Q ss_pred HHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHH
Q 013779 242 GGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 320 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 320 (436)
..+... .......|.|.++++ .+.+. .+.+.......++..+++++.+++.||+++|+.+.....+..+...++
T Consensus 214 ~~~~~~----~~~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 288 (394)
T PRK03699 214 ALLYIL----AQLTFISWVPEYAQKKFGMSL-EDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF 288 (394)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHcCCCh-HHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 222222 223466788998865 56665 778888888889999999999999999999988766555544433332
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchh
Q 013779 321 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENI 400 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 400 (436)
.. .++........ +..+.......+...+...|..| +.++...+......++|..++|.+.|.+.+..|++..
T Consensus 289 ~~-----~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~ 361 (394)
T PRK03699 289 VN-----TDDPSHLLYAI-LGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAA 361 (394)
T ss_pred HH-----cCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhh
Confidence 21 12222222222 22333233333444456667655 4567788888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhee
Q 013779 401 FLLFAAIAFLAVLFIV 416 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~~ 416 (436)
++..+++.+++.+.+.
T Consensus 362 ~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 362 LLTANGLYAVVFVMCI 377 (394)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 8888887777765443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=269.16 Aligned_cols=376 Identities=15% Similarity=0.087 Sum_probs=261.5
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
++..+|.+.+| +|.+.++.+|+.+.+.++...+.+++|+++||+|||+++..+.++++++++++++++|++.++++|+
T Consensus 25 v~~a~p~i~~~--l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~ 102 (495)
T PRK14995 25 LHVAAPTLSMT--LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRA 102 (495)
T ss_pred HHHHHHHHHHH--hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45678999988 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcC-cccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-hc
Q 013779 82 LYGLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WS 159 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~ 159 (436)
++|++.+...|.....+.+++ |+++|++++++.....++|..+||.+++++.+.. +||+.|++...++++..++. ++
T Consensus 103 l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-gwr~~f~i~~~~~~~~~~l~~~~ 181 (495)
T PRK14995 103 LLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF-YWGSVFLINVPIVLVVMGLTARY 181 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998888887765 6799999999999999999999999999999887 99999999887777665444 45
Q ss_pred CCCChHHHHHHhhcCcCccchHHHHHHHH---HhhhhcCCCCCcchhhhHHH-------HHHhhhhccccccccccchhh
Q 013779 160 LPPSPRWLLLRAVQGKGSLQEYKEQAISA---LGKLRRRPPGDKLSERQIED-------TLVSLKSSYTDEKSEGSFLEV 229 (436)
Q Consensus 160 ~~es~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 229 (436)
+||+++. ..++.+..+........ .................... ...-...+ .+.+++.-..++
T Consensus 182 l~~~~~~-----~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e-~~~~~p~~~~~l 255 (495)
T PRK14995 182 VPRQAGR-----RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQ-LAASRPMIDMRL 255 (495)
T ss_pred CCCCCCC-----CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH-hcCCCCCcCHHH
Confidence 6775420 00111111100000000 00011111111111000000 00000000 111112222467
Q ss_pred ccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeeh
Q 013779 230 FQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 308 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 308 (436)
+|++.+....+..+...... ....++.|.+++. .|.++ .+++....+..++..++.++.|++.||+++|+.+..
T Consensus 256 f~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lq~v~g~s~-~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 330 (495)
T PRK14995 256 FTHRIILSGVVMAMTAMITL----VGFELLMAQELQFVHGLSP-LEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATG 330 (495)
T ss_pred hCCcccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 88887665544333333322 2455677888877 45555 899999999999999999999999999999988777
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhh
Q 013779 309 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 388 (436)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 388 (436)
+..+..++...+.... ...+.+.......+.+.+.+... +.......+..|+++++.+.++.++.+++|+.+|+.+.
T Consensus 331 g~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~ 407 (495)
T PRK14995 331 GMALSALSFYGLAMTD--FSTQQWQAWGLMALLGFSAASAL-LASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF 407 (495)
T ss_pred HHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 7666666555443221 11222222333333333333333 33346667788999999999999999999999999999
Q ss_pred HHHHHH
Q 013779 389 SPLKEL 394 (436)
Q Consensus 389 ~~~~~~ 394 (436)
|.+.+.
T Consensus 408 g~i~~~ 413 (495)
T PRK14995 408 GLLLSR 413 (495)
T ss_pred HHHHHH
Confidence 988764
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=260.83 Aligned_cols=357 Identities=15% Similarity=0.123 Sum_probs=256.9
Q ss_pred cccccCcccC-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc-----hhHHH
Q 013779 2 IIAQSPELSG-TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-----PGLGV 75 (436)
Q Consensus 2 ~~~~~p~i~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~ 75 (436)
.+++.|.+.+ | +|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.+++++++ ++++.
T Consensus 53 ~~~l~~~~~~~~--~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~ 130 (462)
T PRK15034 53 FSAVTVNLNKIG--FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGI 130 (462)
T ss_pred HHHHHHHhhhhh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHH
Confidence 4566777766 5 99999999999999999999999999999999999999999999999999999986 89999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccc-----cc------------ccc
Q 013779 76 LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-----NA------------VGG 138 (436)
Q Consensus 76 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~-----~~------------~~~ 138 (436)
+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+. .. ..+
T Consensus 131 lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~ 209 (462)
T PRK15034 131 FIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMS 209 (462)
T ss_pred HHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHH
Confidence 99999999998 7788999999999999999999999997777777776665554322 11 115
Q ss_pred chHHHhhhhHHHHHHHHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccc
Q 013779 139 WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT 218 (436)
Q Consensus 139 w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
||.+.++..++.++..+..++..|+++ +
T Consensus 210 ~~~~~~~~~~~~iv~~i~~~~~~~~~~----------------------------------------------------~ 237 (462)
T PRK15034 210 LANAAWIWVPLLAIATIAAWSGMNDIA----------------------------------------------------S 237 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcc----------------------------------------------------c
Confidence 888888888877776655554322211 0
Q ss_pred cccccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013779 219 DEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD 298 (436)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 298 (436)
++.+..+..+.+|+|+.|.+.+.+... +.++..+.++.|.+.++. ++. ...........+...+.++++|+++|
T Consensus 238 ~~~~~~~~~~vlk~~~~Wllslly~~t----FG~fvg~s~~lp~~~~~~-~~~-~~~l~~~~l~~l~~~l~rplgG~LAD 311 (462)
T PRK15034 238 SRASIADQLPVLQRLHLWLLSLLYLAT----FGSFIGFSAGFAMLAKTQ-FPD-VNILRLAFFGPFIGAIARSVGGAISD 311 (462)
T ss_pred cccCHHHHHHHhCCCchhHHHHHHHHH----HHHHHHHHHHHHHHHHHH-cCh-HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 011122355688999888777554333 333445777888887763 222 23333344556788889999999999
Q ss_pred hcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH-HHHHHHHHHHhhcccccccchhccccCCc--------------
Q 013779 299 DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA-VSALLLYVGCYQISFGPISWLMVSEIFPL-------------- 363 (436)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------- 363 (436)
|+|+++++.++...+.++...+..........+... ...++......+.+.. ..+.++.+.+|+
T Consensus 312 RiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~ 390 (462)
T PRK15034 312 KFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDE 390 (462)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchh
Confidence 999999998888766666544333221100112222 2222222223333333 334667777764
Q ss_pred -------cccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC-cchhHHHHHHHHHHHHhheeEecc
Q 013779 364 -------RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVRTVP 420 (436)
Q Consensus 364 -------~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 420 (436)
++.|.+.|+....+.+|+++.|.++|...+..| +...|+.+.+..+++..+.+..+.
T Consensus 391 ~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 391 QAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 156788999999999999999999999998877 667788888888888887766543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=269.71 Aligned_cols=362 Identities=18% Similarity=0.133 Sum_probs=255.3
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
++..|.+.++ +|.|+.+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++
T Consensus 15 ~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (379)
T TIGR00881 15 ALAMPYLVEE--IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWAL 92 (379)
T ss_pred hhhhHHHHHH--hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4667888887 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHH-HHhhccccccccchHHHhhhhHHHHHHHHH-HhcC
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGY-FVGSFQINAVGGWRYMYGLSAPLALLMGIG-MWSL 160 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~-~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~-~~~~ 160 (436)
.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .++..+.+.. +||+.|++.+++.++..+. .++.
T Consensus 93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-SWHWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999999999999 4666655555 9999999988877765444 4456
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
+|+|+... . ++ .+ +.++ ++ .+.+ +.+++++.+..+...+++++++.++...+
T Consensus 172 ~~~~~~~~------~---~~-~~----------~~~~-~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (379)
T TIGR00881 172 RDSPQSCG------L---PP-AE----------EMPN-EE-PDGD------AEKKEEELTKKQIFLQYVLLNKVLWYISL 223 (379)
T ss_pred CCCccccc------c---Cc-cc----------cCcc-cc-cccc------cccccccccchHHHHHHHHhcchHHHHHH
Confidence 76653100 0 00 00 0000 00 0000 00000011112223456778887776655
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 319 (436)
...+..... .....+.|.++++ .+.+. .+.+.......++.+++.++.+++.||..+++...............
T Consensus 224 ~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 298 (379)
T TIGR00881 224 GYVFVYVVR----TGILDWSPLYLTQEKGFSK-EKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVS 298 (379)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 544444333 2356677777765 56665 77888888999999999999999999865443333222222221111
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcch
Q 013779 320 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAEN 399 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 399 (436)
+..... ................+....+..+....+..|.+|++.|+++.|+.+....+|..++|.+.|.+.|..||+.
T Consensus 299 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 299 LLVYWL-NPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred HHHHhc-CcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccc
Confidence 111110 0011222222222233333333334445678899999999999999999999999999999999999999876
Q ss_pred hH
Q 013779 400 IF 401 (436)
Q Consensus 400 ~~ 401 (436)
.|
T Consensus 378 ~f 379 (379)
T TIGR00881 378 AF 379 (379)
T ss_pred cC
Confidence 53
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=272.01 Aligned_cols=386 Identities=17% Similarity=0.207 Sum_probs=258.3
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
++.+|.+.++ +|+|+.+.+++.+.+.+++.++.++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++
T Consensus 40 ~~~~~~i~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 117 (496)
T PRK03893 40 TLVLTEVQGE--FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLV 117 (496)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4567888887 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCC
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 162 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e 162 (436)
.|++.+...+....++.|++|+++|++++++...+.++|..+++.+++.+.+.. +||+.|++..+..++..+.....||
T Consensus 118 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~p~ 196 (496)
T PRK03893 118 IGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW-GWRALFFIGILPIIFALWLRKNLPE 196 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999988877 9999998865555444444456787
Q ss_pred ChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHH-Hhhhhccccccccccch--------------
Q 013779 163 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL-VSLKSSYTDEKSEGSFL-------------- 227 (436)
Q Consensus 163 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------- 227 (436)
++++...++.++ ..++ ..+.....+. . .......... ......... .....+.
T Consensus 197 ~~~~~~~~~~~~------~~~~---~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 264 (496)
T PRK03893 197 AEDWKEKHAGKA------PVRT---MVDILYRGEH-R-IINILLTLAAAAALWFCFAG-NLQNAAIVAVLGLLCAAIFIS 264 (496)
T ss_pred chhhhhhccccc------cchh---HHHHHhcchh-H-HHHHHHHHHHHHHHHHHHHh-hhcchhHHHHHHHHHHHHHHH
Confidence 765422110000 0000 0000000000 0 0000000000 000000000 0000000
Q ss_pred -hhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHH-hcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccE
Q 013779 228 -EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 305 (436)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 305 (436)
....++..+..........+...........+.|.+++ +.|.+. .+.+.......++.+++.++.+++.||++||+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~-~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~ 343 (496)
T PRK03893 265 FMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDP-HTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKA 343 (496)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 00000011111111111122222222234567888885 667776 788899999999999999999999999999988
Q ss_pred eehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHH
Q 013779 306 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 385 (436)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 385 (436)
+..+..+..+..+.+... ...............++.+.+..+....++.|.+|+++|++++|+.+....+|+.++|
T Consensus 344 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp 419 (496)
T PRK03893 344 YVCSLLISQLLIIPVFAI----GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAP 419 (496)
T ss_pred HHHHHHHHHHHHHHHhhc----cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHH
Confidence 776655444433322211 1122222222222222233333445557888999999999999999999999999999
Q ss_pred HhhHHHHHHhCcchhHHHHHHHH
Q 013779 386 FAFSPLKELLGAENIFLLFAAIA 408 (436)
Q Consensus 386 ~~~~~~~~~~g~~~~~~~~~~~~ 408 (436)
.+.|.+.|..|+...+...+...
T Consensus 420 ~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 420 ILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHhccCChHHHHHHHHHHH
Confidence 99999999999887775555433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=267.20 Aligned_cols=396 Identities=21% Similarity=0.226 Sum_probs=292.0
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhh
Q 013779 13 TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 92 (436)
Q Consensus 13 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 92 (436)
++++.+.....+..+++++|.++|++++|+++||+|||++++.++++..++.++.++++|++.+++.|++.|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCChHHHHHHhh
Q 013779 93 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAV 172 (436)
Q Consensus 93 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~ 172 (436)
....++.|++++++|+.+..+ ......+..++++.++++.. +||+.+++..+++++.++..++.||||||+..
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~--- 263 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLS--- 263 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHH---
Confidence 999999999999999999999 77777777778888777665 89999999999999887777777899999997
Q ss_pred cCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHHHHHhC
Q 013779 173 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITG 252 (436)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (436)
+++.+++.+.+++..+.++.........+.............+++..+.++++.|+++...+...+.++.....
T Consensus 264 ------~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 337 (521)
T KOG0255|consen 264 ------KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLV 337 (521)
T ss_pred ------cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHH
Confidence 45556677776666554422222222222221111112222234456889999987776666555555433222
Q ss_pred hhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCc-
Q 013779 253 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP- 331 (436)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 331 (436)
+..... .....| ..........+..........+...|+.|||.....+..+..++++...+... ...
T Consensus 338 y~gl~~----~~~~lg----~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 406 (521)
T KOG0255|consen 338 YYGLSL----NVSGLG----GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD---DLGG 406 (521)
T ss_pred HHhhhh----hhhhcC----chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc---cchh
Confidence 222211 122222 24555666666688888888899999999999999988888888888776532 122
Q ss_pred hHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHH
Q 013779 332 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLA 411 (436)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 411 (436)
+.......+..++.+.++... +.+..|++|+..|..+.+..+....++++++|.+...... ......+..++....+.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~ 484 (521)
T KOG0255|consen 407 WLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLL 484 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHH
Confidence 233444444444555555544 6899999999999999999999999999999987654444 33333444456666666
Q ss_pred HhheeEecccCCCCCHHHHHhhh
Q 013779 412 VLFIVRTVPETKGLSLEEIESKI 434 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~ 434 (436)
+.+...+.||++++...+..++.
T Consensus 485 ~~~~~~~lpet~~~~l~~t~~~~ 507 (521)
T KOG0255|consen 485 GLLSLLLLPETKGKPLPGTLLDA 507 (521)
T ss_pred HHHHHhcCcccCCCCCchhHHHH
Confidence 66666788999888766554443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=263.25 Aligned_cols=339 Identities=15% Similarity=0.103 Sum_probs=256.4
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch-----hHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-----GLGVLL 77 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~ 77 (436)
.+.+|.+..+ ++.++.+.+++.+++.++..+++++.|+++||+||||++..+.++.+++.++..+.+ +++.++
T Consensus 19 ~~~~~~~~~~--~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
T TIGR00900 19 QVALPLYVLA--GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVY 96 (365)
T ss_pred HHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 3556777777 899999999999999999999999999999999999999999999999988888877 999999
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH
Q 013779 78 VGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 157 (436)
Q Consensus 78 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~ 157 (436)
+.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+.. +||+.|++.++..++..+..
T Consensus 97 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 97 VLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988877 99999998877766655444
Q ss_pred hcC--CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCch
Q 013779 158 WSL--PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 235 (436)
Q Consensus 158 ~~~--~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (436)
+.+ ||+++ ++ +++.+++. .++....+++++|+|.+
T Consensus 176 ~~~~~~~~~~-------------~~-----------------~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 212 (365)
T TIGR00900 176 VSVRIPELAA-------------SE-----------------IQALSNAV-------------LRDTREGIKFVLKNPLL 212 (365)
T ss_pred HhcccccCCC-------------cc-----------------ccccchhH-------------HHHHHhHHHHHHcCcHH
Confidence 433 22111 00 00000000 00011234566778877
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHH
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 314 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 314 (436)
+...+...+....... ....+.|.+.++ .+.+. .+.+.......++.+++.++.+++.||.+||+....+..+.+
T Consensus 213 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 213 RTLLLLALLFNLVFAP---AIVALFPYVQSKYLGRGS-THYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIG 288 (365)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHhHHHHHHHhCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 7665544444433321 222566777776 56665 778888888999999999999999999999988776655555
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 013779 315 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 394 (436)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 394 (436)
++...+... .++........+..+.......+...++..|..|+++|+++.|+.+...+++..++|.+.|.+.|.
T Consensus 289 ~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 289 LAILVVGLT-----PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHhh-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444332 111222333333333433444556668899999999999999999999999999999999999987
Q ss_pred hC
Q 013779 395 LG 396 (436)
Q Consensus 395 ~g 396 (436)
.|
T Consensus 364 ~g 365 (365)
T TIGR00900 364 LG 365 (365)
T ss_pred cC
Confidence 54
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=261.88 Aligned_cols=346 Identities=18% Similarity=0.136 Sum_probs=252.1
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+.|.+|.+.++ +|.|+.+.++..+.+.+++.+++++.|+++||+||||++..+..+.+++.+++.++++++.+++.|+
T Consensus 32 ~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (406)
T PRK15402 32 IQPGMLAVVED--FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRF 109 (406)
T ss_pred HhcchHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 35677888887 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-hcC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~ 160 (436)
++|++.+...+...+.+.|++|+++|.++.++......+|..++|.+++.+.+.. +||+.|++.++..++..+.. +..
T Consensus 110 l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-~w~~~~~~~~~~~~~~~~~~~~~~ 188 (406)
T PRK15402 110 LQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL-PWRGMFVLFAALAALSFFGLWRAM 188 (406)
T ss_pred HHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999888999999999999999999999999989999999999999888876 99999999888877765544 356
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
||+++. ++ ++.+ .++...++++++++|.++...+
T Consensus 189 ~~~~~~-------------~~-----------------~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 222 (406)
T PRK15402 189 PETAGR-------------VG-----------------EKLS----------------LKELGRDYKLVLKNRRFVAGAL 222 (406)
T ss_pred CCCCcc-------------cc-----------------cccc----------------HHHHHHHHHHHHcCcHHHHHHH
Confidence 664320 00 0000 0001113456778887776555
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 319 (436)
...+...... ....+.|.++++ .+.++ .+.+.......++.+++.++.+++.||+++|+....+.....++...
T Consensus 223 ~~~~~~~~~~----~~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~ 297 (406)
T PRK15402 223 ALGLVSLPLL----AWIALSPVILISGEQLSS-YEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLL 297 (406)
T ss_pred HHHHHHHHHH----HHHHHhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4443333222 233445666544 56665 66777777777788999999999999999999887777666666555
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcch
Q 013779 320 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAEN 399 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 399 (436)
+...........++......+...+.+.. .+......... +++++|++.+..+..+.++..+|+.+.+.+.+..++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~-~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 298 AALATVISSHAYLWLTAGLSLYAFGIGLA-NAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL 375 (406)
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHHHHH-hhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence 54432111112222222233332222222 22332333333 45889999999999999999999999999988777544
Q ss_pred hHHH
Q 013779 400 IFLL 403 (436)
Q Consensus 400 ~~~~ 403 (436)
....
T Consensus 376 ~~~~ 379 (406)
T PRK15402 376 FNLF 379 (406)
T ss_pred HHHH
Confidence 3333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=265.10 Aligned_cols=383 Identities=15% Similarity=0.133 Sum_probs=258.5
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc----hhHHHHHHH
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA----PGLGVLLVG 79 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~ 79 (436)
...|.++ + +|+|+++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.+++++. ++++.+.+.
T Consensus 48 ~~~p~~~-~--~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (438)
T TIGR00712 48 LAMPYLV-E--QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVL 124 (438)
T ss_pred hhhHHHH-H--cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 3456665 3 59999999999999999999999999999999999999999999999998887764 467788899
Q ss_pred HHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHH-HHh
Q 013779 80 RLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMW 158 (436)
Q Consensus 80 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~-~~~ 158 (436)
|++.|++.+...+.....+.|++|+++|++++++.+.+.++|..+++.+.+.......+||..|++.++++++..+ ..+
T Consensus 125 ~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 125 LFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred HHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887765444323899999998888777644 445
Q ss_pred cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHH
Q 013779 159 SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAF 238 (436)
Q Consensus 159 ~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (436)
++||+|+.... ++ .++ .+.+.+.+. . + +++.+.+.++...+.++|++.++..
T Consensus 205 ~~~~~~~~~~~---------~~-~~~-------~~~~~~~~~--~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (438)
T TIGR00712 205 MMRDTPQSCGL---------PP-IEE-------YRNDYPDDY--N-E--------KAEQELTAKEIFMQYVLPNKLLWYI 256 (438)
T ss_pred hccCCHHhcCC---------CC-chh-------ccccccccc--c-c--------ccccccchHHHHHHHHccCchHHHH
Confidence 67887642100 00 000 000000000 0 0 0000000000011246778877766
Q ss_pred HHHHHHHHHHHHhChhhHHhchHHHHHhc-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHH
Q 013779 239 IIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 317 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 317 (436)
.+...+..... .....|.|.++++. +.+. .+.+.......+..+++.++.+++.||+++++....+........
T Consensus 257 ~~~~~~~~~~~----~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 331 (438)
T TIGR00712 257 AIANVFVYLLR----YGVLDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVT 331 (438)
T ss_pred HHHHHHHHHHH----HHHHHhHHHHHHHccCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 55443333322 24667889988874 6565 677888888889999999999999999965543333332222221
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHH-HHHHHhhHHHHHHhC
Q 013779 318 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN-AIVTFAFSPLKELLG 396 (436)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~~~~~~~~g 396 (436)
....... ..............+..+....+..........|.+|++.|+++.|+.+...++++ .++|.+.|.+.|..|
T Consensus 332 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g 410 (438)
T TIGR00712 332 IAVIVYW-MNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 410 (438)
T ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc
Confidence 1111111 11111222221122222221112111222456789999999999999999888875 689999999999999
Q ss_pred cchhHHHHHHHHHHHHhheeEecccCC
Q 013779 397 AENIFLLFAAIAFLAVLFIVRTVPETK 423 (436)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (436)
+...+.+..++.+++.+......+|+|
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 411 WDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999998888877777776666566554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=263.99 Aligned_cols=376 Identities=19% Similarity=0.187 Sum_probs=261.6
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
.+.+|.+.++ +|.|+.+.+++.+.+.++..++.+++|+++||+|||+++..+..+.+++.+++.++++++.+++.|++
T Consensus 30 ~~~~p~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 107 (471)
T PRK10504 30 NTALPSMAQS--LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVL 107 (471)
T ss_pred HHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4568888887 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cCC
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLP 161 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~ 161 (436)
+|++.+...|...+++.|++|+++|+++.++.....++|..++|.+++.+.+.. +||+.|++......+..+... ..|
T Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 108 QGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999988877 999999998877666655443 344
Q ss_pred CChHHHHHHhhcCcCccchHHHHHHHHHh--h-hhcCCCCCcchhhhHHHH--------HHhhhhccccccccccchhhc
Q 013779 162 PSPRWLLLRAVQGKGSLQEYKEQAISALG--K-LRRRPPGDKLSERQIEDT--------LVSLKSSYTDEKSEGSFLEVF 230 (436)
Q Consensus 162 es~~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 230 (436)
+++. .+.+.+............. . ..+.+..... ....... .....++.+.+++.. ..+++
T Consensus 187 ~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 258 (471)
T PRK10504 187 NYTM------QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLS-PLAIAGLVAVGVVALLLYLLHARNNNRALF-SLKLF 258 (471)
T ss_pred Cccc------cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcc-hHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-CHHHh
Confidence 4321 0001110000000000000 0 0111110110 0000000 000000001111111 23478
Q ss_pred cCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehh
Q 013779 231 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGG 309 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 309 (436)
|+++++......++..+.. .....+.|++++. .+.+. ...++......++.+++.++.+++.||+++|+.+..+
T Consensus 259 ~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~ 333 (471)
T PRK10504 259 RTRTFSLGLAGSFAGRIGS----GMLPFMTPVFLQIGLGFSP-FHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVAT 333 (471)
T ss_pred cccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 8888777665444444332 2355667777775 56655 7888888888888888889999999999999998877
Q ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHH-HHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhh
Q 013779 310 VCGIALSLLLLSAYYKILGGFPLVAVS-ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 388 (436)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 388 (436)
..+..+...++.... ...+..... ...+...+.+... +.......+..|++.++.++|+.++...+|..+++.+.
T Consensus 334 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 409 (471)
T PRK10504 334 TLGLALVSLLFMLVA---LLGWYYLLPFVLFLQGMVNSTRF-SSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA 409 (471)
T ss_pred HHHHHHHHHHHHhcc---ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 776666655544321 112222222 2222222222222 33447777888999999999999999999999999999
Q ss_pred HHHHHHhCcc
Q 013779 389 SPLKELLGAE 398 (436)
Q Consensus 389 ~~~~~~~g~~ 398 (436)
|.+.+..|+.
T Consensus 410 g~ll~~~g~~ 419 (471)
T PRK10504 410 GLLLGLFGQQ 419 (471)
T ss_pred HHHHHHhhhh
Confidence 9998887753
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=254.97 Aligned_cols=349 Identities=17% Similarity=0.131 Sum_probs=249.7
Q ss_pred ccccCc-ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHhccchhHHHHHHHH
Q 013779 3 IAQSPE-LSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII-AAVLYALGALTTAYAPGLGVLLVGR 80 (436)
Q Consensus 3 ~~~~p~-i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~r 80 (436)
.|.+|. ++++ +|.|+.+.|++.+++.+...+.+++.|+++||+||||.++. +..+..++.++++++++++.+++.|
T Consensus 17 ~~~l~~~l~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (375)
T TIGR00899 17 FPTLSLFLSEE--VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLG 94 (375)
T ss_pred hhHHHHHHHcc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 345554 5566 99999999999999999999999999999999999987654 5666677788888999999999999
Q ss_pred HHHhhhhhhhhhhhhhHhhhcCcccchhhH--HHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-
Q 013779 81 LLYGLGIGLAMHGAPLYIAETCPSQIRGTL--ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM- 157 (436)
Q Consensus 81 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~- 157 (436)
++.|.+.+...|...++..|+.|+++|++. .+....+.++|.++++.+++.+.+.. +||+.|++.+++.++..+..
T Consensus 95 ~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~f~~~~~~~~~~~~~~~ 173 (375)
T TIGR00899 95 VLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTVMFLTAALAFVLCGVLVW 173 (375)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHH
Confidence 999988888889888999999887777654 67888889999999999999988877 99999999988877665554
Q ss_pred hcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhH
Q 013779 158 WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA 237 (436)
Q Consensus 158 ~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (436)
+++||+|++.. + ++++.+.++.+++++++.
T Consensus 174 ~~~~~~~~~~~----------------------------~----------------------~~~~~~~~~~~~~~~~~~ 203 (375)
T TIGR00899 174 LFLPSYPRGAP----------------------------G----------------------ALTRLEVRGLLASRDTRL 203 (375)
T ss_pred HhCCCcccCcc----------------------------c----------------------ccCcchhhhhhcCcchHH
Confidence 45777653100 0 000001223455666665
Q ss_pred HHHHHHHHHHHHHhChhhHHhchHHHHH-hcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHH
Q 013779 238 FIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 316 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 316 (436)
......+...... ....+.|.+++ +.+.+. .+.+..........+++.++.+++.||++||+.+..+.....+.
T Consensus 204 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~ 278 (375)
T TIGR00899 204 LFVACTLMWGCNI----LYIINMPLLIIHELGLPD-KLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAF 278 (375)
T ss_pred HHHHHHHHHHHHH----HHHhhhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 4443333332221 23345566654 456665 66777777777777888899999999999999876665544433
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC
Q 013779 317 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 396 (436)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 396 (436)
...+... ++.+.......+...+.+ ...+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..|
T Consensus 279 ~~~~~~~-----~~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g 351 (375)
T TIGR00899 279 YTGLAAD-----NSLWALLMLQLLNAIFIG-ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS 351 (375)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3222211 122222222222222222 2334555777888775 56799999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhee
Q 013779 397 AENIFLLFAAIAFLAVLFIV 416 (436)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~ 416 (436)
++..+...+++.+++.++..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 352 YHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred chhHHHHHHHHHHHHHHHHh
Confidence 99999988888877766543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=256.93 Aligned_cols=353 Identities=18% Similarity=0.164 Sum_probs=247.0
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+.|.+|++.++ +|.+.++.++..+++.+++.++++++|+++||+|||+++..+.++++++++++.++++++.++++|+
T Consensus 35 ~~p~l~~i~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~ 112 (413)
T PRK15403 35 IQPGIINVVRD--FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARF 112 (413)
T ss_pred hccCHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46778888888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHH-HhcC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG-MWSL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~-~~~~ 160 (436)
++|++.+...+....++.|++|+++|++++++...+..+|..+||.+++.+.+.. +||+.|++.++..++..+. .+.+
T Consensus 113 l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-gw~~~f~~~~~~~~i~~~~~~~~l 191 (413)
T PRK15403 113 IQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-HWKVLFAIIAVMGLIAFVGLLLAM 191 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999998777778888999999999999999999999999999999999888776 9999999998887776654 3457
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
||+++. + + ++. +.+....++++++|||.++...+
T Consensus 192 p~~~~~-------------~----------------~-~~~----------------~~~~~~~~~~~ll~~~~~~~~~l 225 (413)
T PRK15403 192 PETVKR-------------G----------------A-VPF----------------SAKSVLRDFRNVFRNRLFLTGAA 225 (413)
T ss_pred CCCccc-------------c----------------C-CCC----------------ChHHHHHHHHHHHcCHHHHHHHH
Confidence 775420 0 0 000 00001123567788888877665
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHhc-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 319 (436)
...+..... .....+.|.++++. +.+. .+.++.......+.+++..+.+++.++..+++..........++..+
T Consensus 226 ~~~~~~~~~----~~~~~~~P~~l~~~~g~s~-~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l 300 (413)
T PRK15403 226 TLSLSYIPM----MSWVAVSPVILIDAGGMTT-SQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLAL 300 (413)
T ss_pred HHHHHHHHH----HHHHHhChHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 544433332 23555678788775 5554 77788877777888888888877765544444432222222333222
Q ss_pred HHHHHHHHcCCchH-HHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcc
Q 013779 320 LSAYYKILGGFPLV-AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAE 398 (436)
Q Consensus 320 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~ 398 (436)
+....... .+.+. .+....++..+.+... |......-+. ....+|++.++.+.....+...++...+++.+. +..
T Consensus 301 ~~~~~~~~-~~~~~~~~~~~~l~~~G~~~~~-p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~ 376 (413)
T PRK15403 301 LIVGNLLW-PHVWLWSVLGTSLYAFGIGLIF-PTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGR 376 (413)
T ss_pred HHHHHHHc-cccHHHHHHHHHHHHHHHHHHh-HHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 22111011 12222 2223333333333222 2332211111 223479999999999999999999998888776 556
Q ss_pred hhHHHHHHHHHHHH
Q 013779 399 NIFLLFAAIAFLAV 412 (436)
Q Consensus 399 ~~~~~~~~~~~~~~ 412 (436)
..+...+++..+..
T Consensus 377 ~~~~~~~~~~~~~~ 390 (413)
T PRK15403 377 LPFHLLAVVAGVIV 390 (413)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666655554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=258.47 Aligned_cols=360 Identities=22% Similarity=0.283 Sum_probs=251.2
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
++..|.+.++ +|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+.++.+++.+++.++++++.+++.|++
T Consensus 37 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (398)
T TIGR00895 37 GFAAPAISAE--WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFL 114 (398)
T ss_pred HhhHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 4567888888 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHH-HHHhcCC
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG-IGMWSLP 161 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~ 161 (436)
.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+.. +||+.|++.++..++.. +...++|
T Consensus 115 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 193 (398)
T TIGR00895 115 AGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWRSLFYVGGIAPLLLLLLLMRFLP 193 (398)
T ss_pred HhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-cceeehhhhhhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999988877 99999999876555544 4445788
Q ss_pred CChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHH
Q 013779 162 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 241 (436)
Q Consensus 162 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (436)
|++++...+ +.++..+..++.......+..++ . .+++.+++..+...+.+++++..+....
T Consensus 194 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 254 (398)
T TIGR00895 194 ESIDFLVSK----------RPETVRRIVNAIAPQMQAEAQSA--L------PEQKATQGTKRSVFKALFQGKTARITVL- 254 (398)
T ss_pred CCChHHHhc----------CHHHHHHHHHHHHHhcccccccc--c------cccccccchhhHHHHHHhcchhHHHHHH-
Confidence 887654332 01111111111111100000000 0 0000000011111222333332222222
Q ss_pred HHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHH
Q 013779 242 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 321 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 321 (436)
..+..+...........+.|.+.++.+.+. .+.+.......++.+++.++.+++.||+++|+... ...+..+....+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~ 332 (398)
T TIGR00895 255 LWLLYFMLLVGVYFLTNWLPKLMVELGFSL-SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVG 332 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHH
Confidence 112222222333456667787777788776 67888888899999999999999999999884332 3333332222222
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHH
Q 013779 322 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 391 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 391 (436)
.. ..+........++. +.......+...++..|.+|+++|+++.|+.+....+|..++|.+.|.+
T Consensus 333 ~~----~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 333 ST----LFSPTLLLLLGAIA-GFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HH----hhCHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 11 12233333333333 3333334456668999999999999999999999999999999998865
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=256.76 Aligned_cols=336 Identities=17% Similarity=0.215 Sum_probs=249.7
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+.|.+|.+.++ +|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+
T Consensus 24 ~~~~~p~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (385)
T TIGR00710 24 YLPAFPEIAAD--LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRF 101 (385)
T ss_pred hcccHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 45778888888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-hcC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~ 160 (436)
+.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+.. +||+.|++.++..++..+.. +..
T Consensus 102 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 180 (385)
T TIGR00710 102 VQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-SWHAIFAFLSLAGILLSALIFFIL 180 (385)
T ss_pred HHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999888877 99999999888777665544 345
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
||+++. + ++. +.++....+++.+|+++++...+
T Consensus 181 ~~~~~~-------------~------------------~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 213 (385)
T TIGR00710 181 PETLPY-------------E------------------ARI----------------QISTYFETFLLLLKSKMFWGYAL 213 (385)
T ss_pred CCCCCC-------------c------------------ccC----------------CHHHHHHHHHHHHcCchhHHHHH
Confidence 664320 0 000 00000112455677777766554
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHH-hcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 319 (436)
...+..... .....+.|.+++ +.+.++ .+.+.......++.+++.++.+++.||+++|+.+..+..+..++..+
T Consensus 214 ~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (385)
T TIGR00710 214 IYGASFGGF----FAFFSGAPFVYIDIMGVSP-SVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVL 288 (385)
T ss_pred HHHHHHHHH----HHHHHcChHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 433333322 234556677665 466665 77888888889999999999999999999999887776666665555
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 013779 320 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 394 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 394 (436)
+..... ................+.......+.......|..| +.++++.++.+...+.++.+.+.+.+...+.
T Consensus 289 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 289 LEITAI-LGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred HHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 443221 111222222222222323223333445566777766 6789999999988877666766667744443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=268.05 Aligned_cols=374 Identities=13% Similarity=0.117 Sum_probs=257.0
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHH-HH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLV-GR 80 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r 80 (436)
++...|.+.++ +|.|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .|
T Consensus 38 ~~~~~~~i~~~--~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (455)
T TIGR00892 38 VTVFFKELQQI--FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAG 115 (455)
T ss_pred hhhhHHHHHHH--hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34567788887 9999999999999999999999999999999999999999999999999999999999998865 57
Q ss_pred HHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcC
Q 013779 81 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 160 (436)
Q Consensus 81 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 160 (436)
+++|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|++++.+.+.. |||+.|++.+++.++..+..+++
T Consensus 116 ~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 116 FITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999877778888899995 78999999999999999999999999988877 99999999998877665544433
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
.+.++. +. .+..++ . +..++ +...+ +.+ .+...++..+....+++++|+++....
T Consensus 194 ~~~~~~--------~~--~~~~~~-~------~~~~~-~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (455)
T TIGR00892 194 RPVGPS--------QR--VSKSKS-K------EGLPP-DGSTK-KLS------KKSTAEKINRFLDFSLFTHRGFLVYLS 248 (455)
T ss_pred CCCCcc--------cc--cccccc-c------ccCCC-CCccc-ccc------ccchhhhhhhhcchHHhcCchHHHHHH
Confidence 221110 00 000000 0 00000 00000 000 000000000111124677887775554
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc--CCccEeehhhHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL--GRRPLLIGGVCGIALSLL 318 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~ 318 (436)
...+..+.. .....+.|.+.++.+.+. .+.+...+..+++.++++++.+++.||. ++|+...........+..
T Consensus 249 ~~~l~~~~~----~~~~~~l~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~ 323 (455)
T TIGR00892 249 GNVIMFLGF----FAPIIFLVPYAKDKGVDE-YEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLT 323 (455)
T ss_pred HHHHHHHHc----cchHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHH
Confidence 433333322 235567777888887776 7888899999999999999999999974 233333222222211111
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC-c
Q 013779 319 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-A 397 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~ 397 (436)
.+... . .++.+. +....+..+.......+...+...|.+|+++++++.|+.+...++|..++|.+.|.+.+..| |
T Consensus 324 ~ll~~--~-~~~~~~-~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~ 399 (455)
T TIGR00892 324 HLLCA--L-AGDYTG-LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNY 399 (455)
T ss_pred HHHHH--H-hchHHH-HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCc
Confidence 11111 1 122232 23333333333334445556888899999999999999999999999999999999999875 8
Q ss_pred chhHHHHHHHHHHHHh
Q 013779 398 ENIFLLFAAIAFLAVL 413 (436)
Q Consensus 398 ~~~~~~~~~~~~~~~~ 413 (436)
...|++.+++.+++.+
T Consensus 400 ~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 400 KYIFYASGSIVVSAGL 415 (455)
T ss_pred chHHHHhhHHHHHHHH
Confidence 8888887776666554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=254.70 Aligned_cols=357 Identities=15% Similarity=0.149 Sum_probs=247.9
Q ss_pred ccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh---cc-chhHHHHHHHH
Q 013779 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AY-APGLGVLLVGR 80 (436)
Q Consensus 5 ~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~-~~~~~~l~~~r 80 (436)
.+|.+.+| +|.|+++.|++.+.+.++..+++++.|+++||+||||++..+.++.+++++++ +. .++++.+++.|
T Consensus 35 ~~~~~~~~--~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (402)
T TIGR00897 35 WLSPFLKA--LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFY 112 (402)
T ss_pred hHHHHHHH--hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH
Confidence 34555566 89999999999999999999999999999999999999999999999887655 23 35788999999
Q ss_pred HHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHH-HHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-h
Q 013779 81 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGI-LLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-W 158 (436)
Q Consensus 81 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~ 158 (436)
+++|++.+...+...+.+.+++|+++|++++|+.+.+.++|. ++++++++.+.+.. ||+..++.......+..+.. +
T Consensus 113 ~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~ 191 (402)
T TIGR00897 113 GIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-GEMNTLWSALAFVLTGGVIALF 191 (402)
T ss_pred HHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHh
Confidence 999999988888888889999999999999999999999997 68999998888776 76655554433333332222 2
Q ss_pred cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHH
Q 013779 159 SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAF 238 (436)
Q Consensus 159 ~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (436)
+.+|.++ .++++ ++ . +.++....+++++|+|+++..
T Consensus 192 ~~~~~~~--------------~~~~~--------------~~---~-------------~~~~~~~~~~~~~~~~~~~~~ 227 (402)
T TIGR00897 192 SNKDIFT--------------PQHMQ--------------TR---E-------------KFSELGKAATILFTNPNVLLG 227 (402)
T ss_pred ccCCCCC--------------ccccc--------------CC---c-------------chhhHHHHHHHHHcChhHHHH
Confidence 3333211 00000 00 0 000001124467788877655
Q ss_pred HHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeeh-hhHHHHHHH
Q 013779 239 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG-GVCGIALSL 317 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-~~~~~~~~~ 317 (436)
.+...+... .......|.|.++++.+.+. .+.+.......++..++.+..|+++||++||+.... +.....+..
T Consensus 228 ~~~~~~~~~----~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~ 302 (402)
T TIGR00897 228 GMVRIINTI----GLFGFAVFLPMFVAELGFST-SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFT 302 (402)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 544333322 23346678899998888876 667777788889999999999999999998886532 222223322
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCc
Q 013779 318 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGA 397 (436)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~ 397 (436)
..+..... ...+.........+..+.......+.. ....|..| ++|+++.|+.+...+++..++|.+.|.+.+..|+
T Consensus 303 ~~l~~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~ 379 (402)
T TIGR00897 303 LALYYIPQ-HFGHSFAVALIIAIALGIFLAGYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGA 379 (402)
T ss_pred HHHHHHHH-ccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 22221111 011122222222222232222333433 45567644 6899999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhee
Q 013779 398 ENIFLLFAAIAFLAVLFIV 416 (436)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ 416 (436)
...+++.+++.+++.++..
T Consensus 380 ~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 380 IGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999988888777665443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=264.98 Aligned_cols=362 Identities=13% Similarity=0.107 Sum_probs=239.9
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
++.+|.+.++ +|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|++
T Consensus 56 ~~~~~~l~~~--~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l 133 (476)
T PLN00028 56 APLLPIIRDN--LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFF 133 (476)
T ss_pred HHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4667888888 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccc----c----cccchHHHhhhhHHHHHHH
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN----A----VGGWRYMYGLSAPLALLMG 154 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~----~----~~~w~~~f~~~~~~~~~~~ 154 (436)
.|++.+... ....++.|++|+++|++++++.....++|..+++.+.+.+.. . ..+||+.|++.++++++..
T Consensus 134 ~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~ 212 (476)
T PLN00028 134 IGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMG 212 (476)
T ss_pred HHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Confidence 999988654 456688999999999999999988777777777665544321 1 1289999999998888776
Q ss_pred HHHhcCCCC-hHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCC
Q 013779 155 IGMWSLPPS-PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 233 (436)
Q Consensus 155 ~~~~~~~es-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (436)
+..++++++ |+ ++.++. +++ .+.++++....+++.++++
T Consensus 213 l~~~~~~~~~p~--------------~~~~~~-------~~~-------------------~~~~~~~~~~~~~~~~~~~ 252 (476)
T PLN00028 213 ILVLTLGQDLPD--------------GNYREL-------KKS-------------------GTMPKDSFSKVLRYGVTNY 252 (476)
T ss_pred HHHHHHcCcCCC--------------CchhhH-------Hhc-------------------CccccccHHHHHHHHHcCc
Confidence 655554432 21 000000 000 0000000112345567777
Q ss_pred chhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEe----eh
Q 013779 234 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL----IG 308 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~----~~ 308 (436)
+.+...+......... .....+.|.++.+ .|.+. .+++.......++.++++++.|+++||++||+.. ..
T Consensus 253 ~~~~~~~~~~~~~~~~----~~~~~~~p~~l~~~~g~s~-~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~ 327 (476)
T PLN00028 253 RTWILALTYGYSFGVE----LTMDNIIAEYFYDRFGLSL-ETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWA 327 (476)
T ss_pred hhHHHHHHHHHHHHHH----HHHHhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHH
Confidence 7665554433322222 2345567777655 57776 7788889999999999999999999999876321 11
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhh
Q 013779 309 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 388 (436)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 388 (436)
......+..+...... ...+....+....++..+... ..+..+++..+..| +.+|++.|+.+..+.+|+.++|.+.
T Consensus 328 ~~~~~~l~~i~~~~~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~ 403 (476)
T PLN00028 328 LWIVQTLGGVFCIWLG--RANSLGAAIVVMILFSIFVQA-ACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLF 403 (476)
T ss_pred HHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHH-hhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHH
Confidence 1111111111111111 011222222222222222222 22234466667644 7899999999887777777777665
Q ss_pred HHHHHHhCcchhHHHHHHHHHHHHhheeE
Q 013779 389 SPLKELLGAENIFLLFAAIAFLAVLFIVR 417 (436)
Q Consensus 389 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 417 (436)
+ ..+..+|...|.+.+++.+++.++.++
T Consensus 404 ~-~~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 404 F-TGSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred H-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 4 112335778888888777777665543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=255.60 Aligned_cols=336 Identities=19% Similarity=0.189 Sum_probs=247.8
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+.|..|++.++ +|.|+++.++..+++.++..++++++|+++||+|||+++..+..+.+++.+++.++++++.+++.|+
T Consensus 25 ~~p~~~~i~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (401)
T PRK11043 25 YLPAFKAIQAD--LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRF 102 (401)
T ss_pred HHhhHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34667778877 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 161 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 161 (436)
++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+.+.. +||+.|++.++..++..+..++++
T Consensus 103 l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 181 (401)
T PRK11043 103 VQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-GWQAIFATLFAITLLLILPTLRLK 181 (401)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999998888888899999999999999999999999999999999999988877 999999998888877766665555
Q ss_pred CChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHH
Q 013779 162 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 241 (436)
Q Consensus 162 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (436)
|+++. ++ +++++.++++++|+++++...+.
T Consensus 182 ~~~~~-------------~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 211 (401)
T PRK11043 182 PSKKA-------------RK-------------------------------------QSQDALTFKQLLKSKTYLGNVLI 211 (401)
T ss_pred CCCCc-------------cc-------------------------------------cchHHHHHHHHHcChhHHHHHHH
Confidence 54320 00 00011234566677766544433
Q ss_pred HHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHH
Q 013779 242 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 321 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 321 (436)
....... +.....+.|.++++.+.+. .+.+.......++.+++.+..+++.||+++|+..........++...+.
T Consensus 212 ~~~~~~~----~~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~ 286 (401)
T PRK11043 212 FAACSAA----FFAWLTGSPFILEQMGYSP-ADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIW 286 (401)
T ss_pred HHHHHHH----HHHHHHHhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 1234556788888887766 6778777777888899999999999999998876555544444433332
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCc
Q 013779 322 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGA 397 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~ 397 (436)
..........+..+....+. +.......+.......|..| ++++++.|+.+..+..++..++.+.|.+.+....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 360 (401)
T PRK11043 287 LASLLSHPSLVPLLIPFCVM-AAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLL 360 (401)
T ss_pred HHHHhccCcHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChh
Confidence 22111112222222222222 23233334444456666666 6799999999999999999999999988775433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=263.12 Aligned_cols=377 Identities=18% Similarity=0.225 Sum_probs=264.9
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+.+.+|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+
T Consensus 21 ~~~~~p~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (485)
T TIGR00711 21 VNVAIPTIAGD--LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRV 98 (485)
T ss_pred HHHHHHHHHHh--cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 35678899988 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-hcC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~ 160 (436)
++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++++.+.. +||+.|++.+.++++..+.. +..
T Consensus 99 ~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~ 177 (485)
T TIGR00711 99 IQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-HWRWIFLINVPIGIIVVVVAFFIL 177 (485)
T ss_pred HHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-CceehhhhhhHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999988877 99999999888877665544 355
Q ss_pred CCChHHHHHHhhcCcCccchHHHHH--HHHH-hhhhcCCCCCcchhhhHHHHH--------Hhhhhccccccccccchhh
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQA--ISAL-GKLRRRPPGDKLSERQIEDTL--------VSLKSSYTDEKSEGSFLEV 229 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 229 (436)
||+++ +.+++.+..+..-.. .... ......++.++.++.+..... .....+. .++++....++
T Consensus 178 ~~~~~-----~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 251 (485)
T TIGR00711 178 PRDKP-----AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL-TDDNPLVDLRL 251 (485)
T ss_pred CCccc-----cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH-cCCCCccCHHH
Confidence 65432 000010000000000 0000 011111111111111110000 0000000 11111122457
Q ss_pred ccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeeh
Q 013779 230 FQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 308 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 308 (436)
+++++++...+...+..+... ...++.|.++++ .+.++ .+.+.......++.+++.++.+++.||++||+.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 326 (485)
T TIGR00711 252 FKYRNFTIGCVYMSLLGLGLY----GSFYLLPLYLQQVLGYTA-LQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTI 326 (485)
T ss_pred HcCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 788877766554444444332 355677888877 46555 788999999999999999999999999999998877
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHh
Q 013779 309 GVCGIALSLLLLSAYYKILGGFPL-VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 387 (436)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 387 (436)
+..+.+++...+.... ..+.+. .......+...+.+....+.. ....+..|+++++++.|+.+..+.+|+.+++.+
T Consensus 327 g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i 403 (485)
T TIGR00711 327 GLILYAVGFYWRAFTF--TPDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTAL 403 (485)
T ss_pred HHHHHHHHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7776666655544211 112222 222222333333333333333 555677799999999999999999999999999
Q ss_pred hHHHHHHh
Q 013779 388 FSPLKELL 395 (436)
Q Consensus 388 ~~~~~~~~ 395 (436)
.+.+.++.
T Consensus 404 ~g~~~~~~ 411 (485)
T TIGR00711 404 ITTILTNR 411 (485)
T ss_pred HHHHHHHH
Confidence 99988753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=257.90 Aligned_cols=357 Identities=18% Similarity=0.146 Sum_probs=254.7
Q ss_pred cccccCcccCccccccchhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQ-----LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL 76 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~-----~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l 76 (436)
..+.+|.+.++ +|.+..+ .|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.+.++++.+
T Consensus 33 ~~~~l~~~~~~--~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (408)
T PRK09874 33 VMPFLPLYVEQ--LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQF 110 (408)
T ss_pred hhhhHHHHHHH--hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34677888877 8888654 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHH
Q 013779 77 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG 156 (436)
Q Consensus 77 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~ 156 (436)
++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|.+++|.+++.+.+.. +||+.|++.++..++..+.
T Consensus 111 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 188 (408)
T PRK09874 111 LILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY-GLRPVFFITASVLFLCFLV 188 (408)
T ss_pred HHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHH
Confidence 999999999865 56778888999999999999999999999999999999999988877 9999999988877766554
Q ss_pred H-hcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCch
Q 013779 157 M-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 235 (436)
Q Consensus 157 ~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (436)
. ++++|+++. .+++ + . . +..+..+.+++++.
T Consensus 189 ~~~~~~~~~~~-------------~~~~-------------------~-~-~--------------~~~~~~~~~~~~~~ 220 (408)
T PRK09874 189 TLFCIRENFQP-------------VSKK-------------------E-M-L--------------HMREVVTSLKNPKL 220 (408)
T ss_pred HHHHhccCccc-------------ccch-------------------h-h-h--------------HHHHHHHhCcCCch
Confidence 4 345553210 0000 0 0 0 00011223455544
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcch---hhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHH
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAA---DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 312 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 312 (436)
+.......+.... .......+.+.+..+.+.+... ..+......+++.+++.+..+++.||++||+.+..+...
T Consensus 221 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 297 (408)
T PRK09874 221 VLSLFVTTLIIQV---ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIF 297 (408)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4322221111111 1112334455555554333211 234555666778888899999999999999988777665
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHH
Q 013779 313 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 392 (436)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 392 (436)
..++.+..... ++.+... ...+..+.......+...+...+..|++.+++.+++.+....+|..++|.+.|.+.
T Consensus 298 ~~~~~~~~~~~-----~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~ 371 (408)
T PRK09874 298 SVLLLIPMSFV-----QTPLQLG-ILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS 371 (408)
T ss_pred HHHHHHHHHHh-----ccHHHHH-HHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH
Confidence 55544433321 2223222 22233333333344455567778889899999999999999999999999999999
Q ss_pred HHhCcchhHHHHHHHHHHHHhheeEec
Q 013779 393 ELLGAENIFLLFAAIAFLAVLFIVRTV 419 (436)
Q Consensus 393 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ 419 (436)
+..|++..|.+.+++.+++.++.+...
T Consensus 372 ~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 372 ANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888777654433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=253.67 Aligned_cols=337 Identities=18% Similarity=0.206 Sum_probs=239.7
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
.+.+|.+.++ +|.|+.+.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++..++..+++++.+++.|++
T Consensus 23 ~~~lp~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 100 (392)
T PRK10473 23 LVGLPRIAAD--LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFL 100 (392)
T ss_pred hhhHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4678888888 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-hcCC
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLP 161 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~ 161 (436)
+|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+.+.. +||+.|++.++.+++..+.. +.+|
T Consensus 101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-g~~~~~~~~~~~~~i~~~~~~~~~~ 179 (392)
T PRK10473 101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-PWQSLFYTMAAMGILVLLLSLFILK 179 (392)
T ss_pred HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999998877776 99999999888777665543 4566
Q ss_pred CChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHH
Q 013779 162 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 241 (436)
Q Consensus 162 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (436)
|+++. + ++ + ++...+..++.+++++++...+.
T Consensus 180 ~~~~~--------~--------------------~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 211 (392)
T PRK10473 180 ETRPA--------R--------------------AP-A-------------------ASSKPRENSESLLNRFFLSRLVI 211 (392)
T ss_pred CCCCc--------c--------------------cC-C-------------------ccchHHHHHHHHhCHHHHHHHHH
Confidence 64320 0 00 0 00000112344566655543333
Q ss_pred HHHHHHHHHhChhhHHhchHHHHH-hcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHH
Q 013779 242 GGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLL 320 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 320 (436)
..+...... ....+.|.+++ +.|.+. .+.+.......++.+++.++.+++.||+++|+.+..+..+..++...+
T Consensus 212 ~~~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 286 (392)
T PRK10473 212 TTLSVTVIL----TFVNTSPVLLMEQMGFSR-GEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITL 286 (392)
T ss_pred HHHHHHHHH----HHHHhCHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 222222211 23344555554 457665 677888888899999999999999999999998887777666665555
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchh
Q 013779 321 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENI 400 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 400 (436)
.... ..........+...+.+..... ....+..|.++|+ |..+....++..+++.+.+.+.+..|+...
T Consensus 287 ~~~~-----~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~ 355 (392)
T PRK10473 287 ALSP-----SHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAW 355 (392)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 4321 1122222222222222222221 2334444544443 444455567777788888888888887654
Q ss_pred HHHHHH
Q 013779 401 FLLFAA 406 (436)
Q Consensus 401 ~~~~~~ 406 (436)
....+.
T Consensus 356 ~~~~~~ 361 (392)
T PRK10473 356 NMLIGI 361 (392)
T ss_pred HHHHHH
Confidence 444444
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=243.69 Aligned_cols=359 Identities=19% Similarity=0.220 Sum_probs=282.4
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhH---HHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL---GVLLV 78 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~---~~l~~ 78 (436)
.+++.|.+.+| +|+|++|.+++.++..+...+..++.|.+.||||.|++..+++++..+-++..+++.+. +.+++
T Consensus 33 ~s~l~~~i~~~--~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~ 110 (417)
T COG2223 33 FSPLGVFIKSD--FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLV 110 (417)
T ss_pred HHHHHhhhccc--cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence 46777888877 99999999999999999999999999999999999999999999999999999987654 59999
Q ss_pred HHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccccc---chHHHhhhhHHHHHHHH
Q 013779 79 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG---WRYMYGLSAPLALLMGI 155 (436)
Q Consensus 79 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~---w~~~f~~~~~~~~~~~~ 155 (436)
.+++.|++.+ .+....+.+++|+|||++|.++|+.. ..|+|..+...++..+.... + ||....+..+..++..+
T Consensus 111 ~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-g~~~w~~~~~i~~~~l~v~~v 187 (417)
T COG2223 111 IGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-GFLAWRNVAGIYVVALAIAAV 187 (417)
T ss_pred HHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH
Confidence 9999999854 78889999999999999999999999 99999999999998888777 6 99998888888777655
Q ss_pred HHh-cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhcccccccc-ccchhhccCC
Q 013779 156 GMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE-GSFLEVFQGP 233 (436)
Q Consensus 156 ~~~-~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 233 (436)
..+ .+.|.|... ...++.. ...+.+.+++
T Consensus 188 ~~~~~~~d~p~~r-------------------------------------------------~~~~~~~~~~~~~v~~~~ 218 (417)
T COG2223 188 LAWLGMNDVPEHR-------------------------------------------------ASVKPQLPAQLKAVFSNK 218 (417)
T ss_pred HHHHHhCCChhhh-------------------------------------------------ccccccchhHHHHHhcCc
Confidence 554 555544310 0011111 3466778888
Q ss_pred chhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHH
Q 013779 234 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 312 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 312 (436)
+.|.+.+.+.. .+.++..+..++|.++++ ++.++ .+++.........+.+.++++|+++||+|.+|++...+..
T Consensus 219 ~~W~lsllY~~----tFG~Fvgfs~~l~~~~~~~fg~~~-~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~ 293 (417)
T COG2223 219 DTWLLSLLYFA----TFGGFVGFSAYLPMYLVTQFGLSP-VTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVG 293 (417)
T ss_pred chHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHH
Confidence 88877754444 444445688889988877 45554 7888999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHH
Q 013779 313 IALSLLLLSAYYKILG--GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 390 (436)
Q Consensus 313 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 390 (436)
++++............ .+....+........+.+.+.. ..+.++..++| ++.|.+.|+...++.+|++.-|...+.
T Consensus 294 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~ 371 (417)
T COG2223 294 MALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNG-SVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGV 371 (417)
T ss_pred HHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcc-hheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHH
Confidence 8888877765432111 1222333333333333344433 44578888887 577899999999999999999999999
Q ss_pred HHHHhC-cchhHHHHHHHHHHHHhheeEeccc
Q 013779 391 LKELLG-AENIFLLFAAIAFLAVLFIVRTVPE 421 (436)
Q Consensus 391 ~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (436)
..+..| +...|+.+..+.+++.++.+....+
T Consensus 372 ~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 372 SLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 7788999988888888766554433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=251.80 Aligned_cols=351 Identities=23% Similarity=0.243 Sum_probs=239.8
Q ss_pred cccCcccCccccccchhHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHH----
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSG-----SLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG---- 74 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---- 74 (436)
+..|.+.++...+.++.+.+.+.+. ..++..+++++.|+++||+||||++..+.++.+++.++++++++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGI 93 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHH
Confidence 3445555553334666777665554 3334457899999999999999999999999999999999998875
Q ss_pred ----HHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccc--------cccccchHH
Q 013779 75 ----VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGWRYM 142 (436)
Q Consensus 75 ----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~--------~~~~~w~~~ 142 (436)
.+++.|+++|++.+...+...+++.|++|+++|++..++.+.+..+|.++++.++..+. +.. +||+.
T Consensus 94 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~-~w~~~ 172 (394)
T TIGR00883 94 WAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEW-GWRIP 172 (394)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhcc-chHHH
Confidence 58899999999999999999999999999999999999999999999999998876543 233 89999
Q ss_pred HhhhhHHHHHHHHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccc
Q 013779 143 YGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKS 222 (436)
Q Consensus 143 f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (436)
|++.+++.++........||+|++...+ .++++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~ 206 (394)
T TIGR00883 173 FLVSAVLVLIGLYLRRNLEETPVFEKAQ----------------------------------------------EKHKKK 206 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHH----------------------------------------------hccccc
Confidence 9988777666655555667765421100 000111
Q ss_pred cccchhhccCCc--hhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013779 223 EGSFLEVFQGPN--LKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 299 (436)
Q Consensus 223 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 299 (436)
+.+.++.+++++ ++..... .+...........+.|.+.++ .+.+. .+.+.......+...++.++.+++.||
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr 281 (394)
T TIGR00883 207 RGPIRETLTKHRKPFLLGLGL----VIATTTTFYLITTYLPTYLTQTLGLSA-NSALLVLMLSLILFFITIPLSGALSDR 281 (394)
T ss_pred cCCHHHHHHhchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444555544 2222222 222222233456677888744 56655 677888888889999999999999999
Q ss_pred cCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHH-HHHHH
Q 013779 300 LGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNF 378 (436)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~ 378 (436)
++||+.+.....+..+......... ....+...........+.......+...++..|.+|++.|+++.++. +....
T Consensus 282 ~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 359 (394)
T TIGR00883 282 IGRRPVLIIFTVLAALLAVPLLMAL--LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGA 359 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHH--hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHH
Confidence 9999876644443333221111111 11222222222223333333334445568899999999999999985 44566
Q ss_pred HHHHHHHHhhHHHHHHhC-cchhHHHHHHHH
Q 013779 379 GSNAIVTFAFSPLKELLG-AENIFLLFAAIA 408 (436)
Q Consensus 379 ~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~ 408 (436)
+|..++|.+.|.+.+..| +...++....+.
T Consensus 360 ~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 360 IFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 788899999999999988 655555544443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=248.17 Aligned_cols=398 Identities=22% Similarity=0.300 Sum_probs=288.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch-------hHHHHHHHHHHHhhhhhh
Q 013779 17 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-------GLGVLLVGRLLYGLGIGL 89 (436)
Q Consensus 17 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~ 89 (436)
.++.-.+.+..+..+|.++||++.|++.||+|||+++...+++..+++++++++. -.+++...|++.|+|.|+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG 160 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG 160 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence 5677889999999999999999999999999999999999999999999888753 257899999999999999
Q ss_pred hhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccc----cc----------ccchHHHhhhhHHHHHHHH
Q 013779 90 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN----AV----------GGWRYMYGLSAPLALLMGI 155 (436)
Q Consensus 90 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~----~~----------~~w~~~f~~~~~~~~~~~~ 155 (436)
.+|.+.+..+|...++.||...+...+..+.|...|.+++-.+.. .. .-||..|.+..+++++...
T Consensus 161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly 240 (538)
T KOG0252|consen 161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY 240 (538)
T ss_pred CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888888887777776655431 11 1499999999999999999
Q ss_pred HHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCch
Q 013779 156 GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 235 (436)
Q Consensus 156 ~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (436)
..+.+|||++|..... ++.+++.+..++..+ .+.++..+........++....+...+..+ .
T Consensus 241 ~Rl~M~Et~~Y~al~~--------~~~~~a~~d~~k~~~---------~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-h 302 (538)
T KOG0252|consen 241 FRLKMPETARYTALVS--------KKLKQAAGDMKKVLS---------VDIEAESTAESDVPPPSNSFGLFSRLFLRW-H 302 (538)
T ss_pred hhhcCCcchhHHHHhh--------cCHhhhhhccccccc---------cccchhhccccCCCCcccccchHHHHHHHH-H
Confidence 9999999999753221 111111111111100 011111100000011111111233333333 2
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhH-------HH-HHHHHHHHHHHHHHHHHHHhhcCCccEee
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADAT-------RV-SVVIGVFKLVMTWIAVAKVDDLGRRPLLI 307 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 307 (436)
-+.++..+..++..-..++....+...++++.+..+..+.. .. ..+...+.+.|..+...++|++||+++.+
T Consensus 303 g~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~ 382 (538)
T KOG0252|consen 303 GKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQL 382 (538)
T ss_pred HHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHH
Confidence 24566677777777777777888888888887776533322 11 22222333446677778899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHh
Q 013779 308 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 387 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 387 (436)
.++.++.+..+.+........ +.....++..+...+...+.+.....+.+|.+|.+.|++..|+...++..|+.++...
T Consensus 383 ~GF~~~~i~~~~~~~~y~~~~-~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~ 461 (538)
T KOG0252|consen 383 MGFFIMTIFFFVIAGPYNQLE-NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFG 461 (538)
T ss_pred hhHHHHHHHHHHHcCCccccc-ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHH
Confidence 999999998888776443111 2222333344444555666676777899999999999999999999999999999999
Q ss_pred hHHHHH-----HhCcchhHHHHHHHHHHHHhheeEecccCCCCCHHHHHhhh
Q 013779 388 FSPLKE-----LLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 434 (436)
Q Consensus 388 ~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (436)
+.++.+ ..|.+..++++++++.++.+.. +++||+++++.+|++++.
T Consensus 462 F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 462 FLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEISNEE 512 (538)
T ss_pred hhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccCHHHhcChh
Confidence 999999 7889999999999999887755 456799999998886554
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=250.08 Aligned_cols=330 Identities=20% Similarity=0.271 Sum_probs=237.1
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+.|.+|.+.++ +|+|+++.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+
T Consensus 10 ~~p~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 87 (377)
T PRK11102 10 YLPALPVIAAD--FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRF 87 (377)
T ss_pred HhccHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 46888999988 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-hcC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~ 160 (436)
++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+.. +||+.|++.+++.++..+.. +++
T Consensus 88 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 166 (377)
T PRK11102 88 LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALAAILAAALVFFFI 166 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999988876 99999999888877765443 466
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
||+++. + ++ ++. + .++...++++.++++..+...+
T Consensus 167 ~~~~~~-------------~--------------~~--~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~ 201 (377)
T PRK11102 167 PETLPK-------------E--------------RR--QPF---H-------------LRTTIRNFASLFRHKRVLGYML 201 (377)
T ss_pred CccCcc-------------c--------------cc--CCC---C-------------hHHHHHHHHHHHcChHHHHHHH
Confidence 664320 0 00 000 0 0000112345667766554443
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 319 (436)
...+... .......+.|.++.+ .+.++ .+.+.......++.+++.++.+++.||+++|+.+..+.....+....
T Consensus 202 ~~~~~~~----~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~ 276 (377)
T PRK11102 202 ASGFSFA----GMFSFLTAGPFVYIELNGVSP-QNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIW 276 (377)
T ss_pred HHHHHHH----HHHHHHHcCHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 3322222 222344455655544 56665 78888999999999999999999999999999887776654443333
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHH-HHHHHHHHh
Q 013779 320 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF-GSNAIVTFA 387 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~ 387 (436)
+..... .+...+..........+.... ..+.......|..| +.++++.++.+.... ++..+++.+
T Consensus 277 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 277 LVVSAL-LDLGFWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHH-HhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 111122222222222222222 22233355677766 889999998877643 444555544
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=252.25 Aligned_cols=355 Identities=15% Similarity=0.054 Sum_probs=246.9
Q ss_pred cCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhh
Q 013779 6 SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGL 85 (436)
Q Consensus 6 ~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 85 (436)
+|.+.+| +|.++.+.+++.+.+.+++.+.++++|+++||+||||++.++.++.+++++++.+..+. ++.|+++|+
T Consensus 26 ~~~~~~~--~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~ 100 (393)
T PRK11195 26 AIALLKE--LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGI 100 (393)
T ss_pred HHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3445556 89999999999999999999999999999999999999999999999998887776664 788999999
Q ss_pred hhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCChH
Q 013779 86 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPR 165 (436)
Q Consensus 86 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~~ 165 (436)
+.+...|+..+++.|++|+++|++++++.+....+|.++||.+++++.+. .|+..+.+.+...++..+..+.+||+|+
T Consensus 101 ~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 178 (393)
T PRK11195 101 GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCALIYLLAALFNLFIPRLGA 178 (393)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999999999999999999999998875 5888877776665555555567777653
Q ss_pred HHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHH
Q 013779 166 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 245 (436)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (436)
.. +. .+.+ .....++ . ....+.++++|.++.......+.
T Consensus 179 ~~-------~~-------------------~~~~--~~~~~~~----~---------~~~~~~l~~~~~~~~~~~~~~~~ 217 (393)
T PRK11195 179 RR-------PG-------------------QSWN--PIALLRD----F---------FHACRVLWRDKLGRFSLAGTTLF 217 (393)
T ss_pred cc-------cc-------------------cCCC--HHHHHHH----H---------HHHHHHHHhCchhHHHHHHHHHH
Confidence 10 00 0000 0000000 0 01124566777666544333332
Q ss_pred HHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHH
Q 013779 246 LFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY 324 (436)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (436)
+.... ...+..+.++++ .+.++ .+.+......+++.+++.++.+++.||.++++....+. ..++....+..
T Consensus 218 ~~~~~----~~~~~~~~~~~~~lg~s~-~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~-- 289 (393)
T PRK11195 218 WGAGA----TLRFLVLAWAPVALGITL-NQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMAL-- 289 (393)
T ss_pred HHHHH----HHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHH--
Confidence 22221 233344455554 45555 78899999999999999999999999988887665553 22222222221
Q ss_pred HHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccc-cchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHH
Q 013779 325 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT-RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 403 (436)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 403 (436)
.++.+.......+.+.+.+... +...+..++..|++. +|++.++.+..++++..++..+.+.+ +..|.+..+.+
T Consensus 290 ---~~~~~~~~~~~~~~G~~~g~~~-~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 364 (393)
T PRK11195 290 ---QHSLLPAYPLLILIGALGGFFV-VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVI 364 (393)
T ss_pred ---HhHHHHHHHHHHHHHHhhhhhh-hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHH
Confidence 1222222222223323333333 334466777756554 79999999999999999999998844 77888777777
Q ss_pred HHHHHHHHHhheeEeccc
Q 013779 404 FAAIAFLAVLFIVRTVPE 421 (436)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~ 421 (436)
.+...+++..+.+.++.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK11195 365 VGFGLLVALAMALLWRWH 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666555444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=245.60 Aligned_cols=329 Identities=33% Similarity=0.424 Sum_probs=272.6
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
.+..|.+.++ +|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+.+.+.++++.+++.|++
T Consensus 19 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (352)
T cd06174 19 SPALPLLAED--LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFL 96 (352)
T ss_pred HhhHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4566777777 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCC
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 162 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e 162 (436)
.|++.+...+...+++.|++|+|+|++.+++.+...++|..+++.+++.+.+.. +||+.+++.++..++..+...+++
T Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 174 (352)
T cd06174 97 LGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-GWRWLFLILAILGLLLALLLLFLL- 174 (352)
T ss_pred HHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999999988877 899999998888777666554321
Q ss_pred ChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHH
Q 013779 163 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG 242 (436)
Q Consensus 163 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (436)
|.++...+.
T Consensus 175 ----------------------------------------------------------------------~~~~~~~~~- 183 (352)
T cd06174 175 ----------------------------------------------------------------------RLLLLLALA- 183 (352)
T ss_pred ----------------------------------------------------------------------HHHHHHHHH-
Confidence 122323322
Q ss_pred HHHHHHHHhChhhHHhchHHHHHhc-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-EeehhhHHHHHHHHHH
Q 013779 243 GLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP-LLIGGVCGIALSLLLL 320 (436)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~ 320 (436)
.+...........+.|.+.++. +.++ .+.+.......++..++.++.+++.||++||+ .+..+..+..++...+
T Consensus 184 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (352)
T cd06174 184 ---FFLLSFGYYGLLTYLPLYLQEVLGLSA-AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL 259 (352)
T ss_pred ---HHHHHhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2223333345667788888776 5555 78899999999999999999999999999998 7777777777766665
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchh
Q 013779 321 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENI 400 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 400 (436)
... ++ ...........+.......+....+..|..|+++|++..|+.+....++..++|.+.+.+.+..+++..
T Consensus 260 ~~~-----~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~ 333 (352)
T cd06174 260 ALA-----PS-LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGV 333 (352)
T ss_pred HHh-----cc-HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchH
Confidence 532 22 333333444444444555667779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhee
Q 013779 401 FLLFAAIAFLAVLFIV 416 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~~ 416 (436)
+.+.+++.+++.++..
T Consensus 334 ~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 334 FLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHhe
Confidence 9999988888776544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=251.21 Aligned_cols=333 Identities=28% Similarity=0.379 Sum_probs=245.7
Q ss_pred ccccC-cccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 3 IAQSP-ELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 3 ~~~~p-~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
.+.+| .+.++ +|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++++++.+++.|+
T Consensus 16 ~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (352)
T PF07690_consen 16 SPALPLYLAEE--LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARF 93 (352)
T ss_dssp HHHHH-HHHCC--STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcc
Confidence 45667 67777 9999999999999999999999999999999999999999999999999777667678889999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-hcC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~ 160 (436)
+.|++.+...+...+++.|++|+++|++++++.+...++|.++++.+++.+.+.. +||+.|++.+++.++..++. ++.
T Consensus 94 l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 94 LLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-GWRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-HHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-ccccccccccchhhhhhhhHhhhh
Confidence 9999999999999999999999999999999999999999999999999988777 89999999999988886643 445
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccc-cchhhccCCchhHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEG-SFLEVFQGPNLKAFI 239 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 239 (436)
+++|+.. .+++++ +++ .+.+++.. .++.+.+++.++...
T Consensus 173 ~~~~~~~---------------------------~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 212 (352)
T PF07690_consen 173 PEPPPPR---------------------------ERESPK--ESE-----------SKKPKPLKPGFKSLFKNPVLWILL 212 (352)
T ss_dssp ---STTT---------------------------T--SST--TTT-------------HHHCCCH-CTHHHHHHCCHHHH
T ss_pred hhccccc---------------------------cccccc--ccc-----------cccccccccccccccccchhhhhh
Confidence 4443200 000000 000 00111111 356666766665333
Q ss_pred HHHHHHHHHHHhChhhHHhchHHH-HHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHH
Q 013779 240 IGGGLVLFQQITGQPSVLYYAGPI-LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 318 (436)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 318 (436)
.......+.. .....+.|.+ .++.+.+...+.+.......+...++.++.+++.||+++|+..........+...
T Consensus 213 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 288 (352)
T PF07690_consen 213 IAFFLFFFVF----SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGAL 288 (352)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHH----HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 3333332222 2366777777 4556666226888888999999999999999999999998777766666665555
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHH
Q 013779 319 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 385 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 385 (436)
.+...... ++....+....+ .+.......+....+..|..|++++|++.|+.+...+++..++|
T Consensus 289 ~~~~~~~~--~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 289 GLLLLPFS--SSPVWLIIALFL-IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHCCSHHH--CHHHHHHHHHHH-HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 54433221 122333333333 33334444566678999999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=248.68 Aligned_cols=341 Identities=17% Similarity=0.168 Sum_probs=245.2
Q ss_pred ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhh
Q 013779 9 LSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIG 88 (436)
Q Consensus 9 i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 88 (436)
++++ +|+|..+.|+..+...++..+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+
T Consensus 37 ~~~~--~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~ 114 (400)
T PRK11646 37 FVDQ--LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGT 114 (400)
T ss_pred HHHH--hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4555 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-hcCCCChHHH
Q 013779 89 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWL 167 (436)
Q Consensus 89 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~es~~~l 167 (436)
...|...+++.|++|+++|++++++.....++|..+||.+++.+. .. +||+.|++.++..++..+.. ++.||.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-- 190 (400)
T PRK11646 115 LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGAVLFVLAAAFNAWLLPAYKL-- 190 (400)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHhCCcccc--
Confidence 899999999999999999999999999999999999999999988 45 99999999887776654433 34444110
Q ss_pred HHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHH
Q 013779 168 LLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLF 247 (436)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (436)
+ + . +++.+.++++++++++++...+.......
T Consensus 191 ------------~---------------~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (400)
T PRK11646 191 ------------S---------------T--V-------------------RTPVREGMTRVLRDKRFVTYVLTLTGYYM 222 (400)
T ss_pred ------------c---------------c--c-------------------chhhHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 0 0 0 00011134566777766644433222222
Q ss_pred HHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh-hcCCccEeehhhHHHHHHHHHHHHHHHH
Q 013779 248 QQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD-DLGRRPLLIGGVCGIALSLLLLSAYYKI 326 (436)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (436)
.. .....+.|.+.++.+.++ .+.+.......+....+....+++.| |++.++.+..+..+..++...+...
T Consensus 223 ~~----~~~~~~~p~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~--- 294 (400)
T PRK11646 223 LA----VQVMLMLPIMVNDIAGSP-SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV--- 294 (400)
T ss_pred HH----HHHHHhhhhhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---
Confidence 11 123456788888876655 67777777776666655555556555 4555555555555555554443321
Q ss_pred HcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC----cchhHH
Q 013779 327 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG----AENIFL 402 (436)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g----~~~~~~ 402 (436)
++.+.......+...+ .....|...++..|..|+++||+++|+.+....+|..++|.+.|.+.|..+ ....+.
T Consensus 295 --~~~~~~~~~~~l~~~g-~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~ 371 (400)
T PRK11646 295 --SNLQQLFTLICLFYIG-SIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWM 371 (400)
T ss_pred --hhHHHHHHHHHHHHHH-HHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHH
Confidence 1222222222222222 223345555888899999999999999999999999999999999998853 345555
Q ss_pred HHHHHHHHHHhh
Q 013779 403 LFAAIAFLAVLF 414 (436)
Q Consensus 403 ~~~~~~~~~~~~ 414 (436)
..+.+.+++.+.
T Consensus 372 ~~~~~~~~~~~~ 383 (400)
T PRK11646 372 MLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=242.62 Aligned_cols=330 Identities=19% Similarity=0.142 Sum_probs=240.2
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
++|.+|.+.+| +|.|+++.|++.+.+.++..+++++.|+++||+||||++.++.++..++.+.+ ..++++.+++.|+
T Consensus 19 ~~~~lp~l~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 19 VGPLLPQIRSA--LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred CcccHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 57889999998 99999999999999999999999999999999999999999999888888877 7789999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccc-cchHHHhhhhHHHHHHHHHHhcC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMWSL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-~w~~~f~~~~~~~~~~~~~~~~~ 160 (436)
+.|++.+...+....++.|++| ++|++++++.+.+.++|..+++.+++.+.+... +||+.|.+.++..++... .++
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~ 172 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWI 172 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHh
Confidence 9999999888888889999886 689999999999999999999999888776542 499998877665443322 223
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
|++++ +++ ++++..+...++++|+|..+...+
T Consensus 173 ~~~~~-----------------------------~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 204 (355)
T TIGR00896 173 PQVRR-----------------------------RVA-------------------ANQTTTRLTPVRIWRSPLAWQVTV 204 (355)
T ss_pred hhhcc-----------------------------ccC-------------------CCCCCCCCCCchhhcCHhHHHHHH
Confidence 33211 000 000001123455677777665544
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcC-CccEeehhhHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG-RRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~ 319 (436)
...+..... .....|.|.++++.+.+. .+.+...+...++.++++++.+++.||++ ||+.+..+..+.+++.+.
T Consensus 205 ~~~~~~~~~----~~~~~~lp~~~~~~g~~~-~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 279 (355)
T TIGR00896 205 FFGLQSGLY----YSLIGWLPAILISHGASA-ATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCG 279 (355)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence 333322222 245668888888887766 78888999999999999999999999995 455555555555555544
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccc-cCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCc
Q 013779 320 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSE-IFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGA 397 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~ 397 (436)
+.... .. .... ...+. +.......+...+...+ ..+++.++...++.+...+++..++|.+.|.+.|..|.
T Consensus 280 ~~~~~----~~-~~~~-~~~l~-g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 280 LLFAP----MH-GLWA-WALVL-GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHhh----hh-HHHH-HHHHH-HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 43221 11 1111 12222 33333333444344443 33456778999999999999999999999999998873
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=246.20 Aligned_cols=346 Identities=18% Similarity=0.179 Sum_probs=240.7
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 83 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 83 (436)
-+.+++++. ||+++++.|++.+.+.+.+.+.+|++|+++|||.||+++.+|..+|.++.++++++..||++.++|.+.
T Consensus 54 gv~~~v~~~--fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~v 131 (493)
T KOG1330|consen 54 GVLKEVQTY--FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFV 131 (493)
T ss_pred hhhHHHHHh--cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667766 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cCCC
Q 013779 84 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPP 162 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~e 162 (436)
|+|.+...|..+++++|.+|+++|++++++++.+.++|..+|.+.+..+.+....|||.|+..++++++..++.+ +.+|
T Consensus 132 GiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 132 GIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred ccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999888774599999999999999877765 5555
Q ss_pred ChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHH
Q 013779 163 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG 242 (436)
Q Consensus 163 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (436)
.+|- ..++ .++++ +.........++.+.+.|++.+....+.+
T Consensus 212 P~rg--------------a~~~-------~~~~~-----------------~~~~~~ts~~kDl~~l~~~~v~v~~sl~~ 253 (493)
T KOG1330|consen 212 PERG--------------ARDE-------VDGEN-----------------KMVKPFTSVWKDLKVLAKIKVFVLSSLGI 253 (493)
T ss_pred cccc--------------cccc-------cccCC-----------------cCCCCccchHHHHHHHHccCceeeehHHH
Confidence 4320 0000 00000 00001112223344455656555545444
Q ss_pred HHHHHHHHhChhhHHhchHHHH----HhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC----ccEeehhhHHHH
Q 013779 243 GLVLFQQITGQPSVLYYAGPIL----QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR----RPLLIGGVCGIA 314 (436)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~----~~~~~~~~~~~~ 314 (436)
....+...+ +.+|.|.+. +-.+++. ....++..+...++.+|.+++|.++||+.| ..........++
T Consensus 254 ~a~~fv~Gs----~sww~p~~~~~~~~~~~~~~-~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~ 328 (493)
T KOG1330|consen 254 IAAQFVIGS----LSWWAPAFIYYSYELIGFDH-NATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAA 328 (493)
T ss_pred HHHHHhccc----cchhhhhHHHHHHHHhCCcc-ccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHh
Confidence 444444333 444444433 3345454 566777888889999999999999999433 122222222222
Q ss_pred HHHHH----HHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHH-HHHHHHHHhhH
Q 013779 315 LSLLL----LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF-GSNAIVTFAFS 389 (436)
Q Consensus 315 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~~ 389 (436)
.+... +....... .......+.++++.-...........-+..|++|++.|.++.++...+.. .|.+.+|.+.|
T Consensus 329 ~g~~~s~~~L~~~~~~~-~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivG 407 (493)
T KOG1330|consen 329 LGAPLSIPFLFLFPAFT-SSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVG 407 (493)
T ss_pred hhhhHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceeh
Confidence 22211 11111111 12222222222222222222223334677889999999999999877744 45556666999
Q ss_pred HHHHHh
Q 013779 390 PLKELL 395 (436)
Q Consensus 390 ~~~~~~ 395 (436)
.+.|..
T Consensus 408 ilsd~l 413 (493)
T KOG1330|consen 408 ILSDKL 413 (493)
T ss_pred hHHHHh
Confidence 998864
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=247.85 Aligned_cols=345 Identities=16% Similarity=0.159 Sum_probs=250.4
Q ss_pred cccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhh
Q 013779 8 ELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 87 (436)
Q Consensus 8 ~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 87 (436)
.++++ +|+|+.+.|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++.+++++++.+++.|++.|.+.
T Consensus 33 ~l~~~--~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 110 (395)
T PRK10054 33 YLSRQ--YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAY 110 (395)
T ss_pred HHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455 8999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-hcCCCChHH
Q 013779 88 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRW 166 (436)
Q Consensus 88 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~es~~~ 166 (436)
+...+...++..|..|+++|++++++.....++|.+++|.+++++.+ . +||..|++.++..++..+.. +++||+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~f~~~~~~~~i~~i~~~~~~~~~~~- 187 (395)
T PRK10054 111 SVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLPFWLAAICSAFPLVFIQIWVQRSEK- 187 (395)
T ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence 88888899999999999999999999999999999999999998775 4 89999998887777664443 34554321
Q ss_pred HHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHH
Q 013779 167 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 246 (436)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (436)
++ ++ + + ++..+.++.+|+|+++...+...+..
T Consensus 188 ------------~~------------------~~--~-~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (395)
T PRK10054 188 ------------AI------------------AT--E-T---------------GSVWSPSVLLQDKALLWFTCSGFLAS 219 (395)
T ss_pred ------------cc------------------cc--c-h---------------hhhhhhhhhccCceehHHHHHHHHHH
Confidence 00 00 0 0 00011245677888776665544444
Q ss_pred HHHHhChhhHHhchHHHHH---hcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHH
Q 013779 247 FQQITGQPSVLYYAGPILQ---SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 323 (436)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (436)
+.... ...+.+.+.. +.+.+. ...+.......+.........+++.||.++|+.+..+..+..++...+...
T Consensus 220 ~~~~~----~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 294 (395)
T PRK10054 220 FVSGA----FASCISQYVMVVADSDFAE-KVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS 294 (395)
T ss_pred HHHHH----hhhhHHHHHHHhcccchHH-HHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc
Confidence 43322 2223333332 233333 345666666666667777888899999999988777766666655544321
Q ss_pred HHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHH
Q 013779 324 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 403 (436)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 403 (436)
.++...........+.......|.....+.+..|++.++++.+..+ ...+|..+||.+.|.+.|..|+...+++
T Consensus 295 -----~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~ 368 (395)
T PRK10054 295 -----GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVI 368 (395)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHH
Confidence 1222222222233333333444566678889999999999988755 6778999999999999999998888888
Q ss_pred HHHHHHHHHhhee
Q 013779 404 FAAIAFLAVLFIV 416 (436)
Q Consensus 404 ~~~~~~~~~~~~~ 416 (436)
.+.+..++.++..
T Consensus 369 ~~~~~~~~~~~~~ 381 (395)
T PRK10054 369 LALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666655443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-31 Score=242.55 Aligned_cols=345 Identities=17% Similarity=0.126 Sum_probs=250.0
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc---chhHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY---APGLGVLLV 78 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~ 78 (436)
..|.+|.++++ +|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++.. .++++.+++
T Consensus 22 ~~~l~~~~~~~--~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~ 99 (410)
T TIGR00885 22 TNPMVPQFQQA--FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLV 99 (410)
T ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 35788999888 9999999999999999999999999999999999999999999999999988644 468999999
Q ss_pred HHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccc----------------------
Q 013779 79 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV---------------------- 136 (436)
Q Consensus 79 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~---------------------- 136 (436)
.|++.|+|.|...+..++++.+..|+++|++.+++.+...++|..+++.+++.+....
T Consensus 100 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (410)
T TIGR00885 100 GLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKH 179 (410)
T ss_pred HHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988764221
Q ss_pred ---ccchHHHhhhhHHHHHHHHHHhc--CCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHH
Q 013779 137 ---GGWRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 211 (436)
Q Consensus 137 ---~~w~~~f~~~~~~~~~~~~~~~~--~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (436)
.+||++|++.+++.++..+...+ .||.++ ++
T Consensus 180 ~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~---------------------------------~~----------- 215 (410)
T TIGR00885 180 SDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH---------------------------------SD----------- 215 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---------------------------------cc-----------
Confidence 15999999988877766544432 232110 00
Q ss_pred hhhhccccccccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCC-cchhhHHHHHHHHHHHHHHH
Q 013779 212 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFS-AAADATRVSVVIGVFKLVMT 290 (436)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 290 (436)
+ ++.....+.++++|+|.++...+..++....+. ....|.+.+.++.+.. +................+|+
T Consensus 216 ---~--~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~----~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR 286 (410)
T TIGR00885 216 ---A--KQISFSASLSRLARIRHYREGVIAQFFYVGVQI----MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISR 286 (410)
T ss_pred ---c--ccccchhhHHHHHhChhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 000011133456777877766655555444443 3456677777664322 21333445555567789999
Q ss_pred HHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhh
Q 013779 291 WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 370 (436)
Q Consensus 291 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 370 (436)
++++++.||+++|+.+.+...+..+..++... .+.......+.+...+.+..+ |..++...+..+++.+..+.
T Consensus 287 ~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~------~~~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~ 359 (410)
T TIGR00885 287 FIGTWLISYLAAHKVLMAYAIIGMALCLGSIF------AGGHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAA 359 (410)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH------cCChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHH
Confidence 99999999999999877666666655555443 122233344444444444444 67778888888877665555
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHh------CcchhHHHHHHHHHH
Q 013779 371 SLAVLTNFGSNAIVTFAFSPLKELL------GAENIFLLFAAIAFL 410 (436)
Q Consensus 371 g~~~~~~~~g~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~ 410 (436)
++.... +|+.+.|.+.|.+.|.. +.+..|++...+.+.
T Consensus 360 ~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 360 GLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred HHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 555543 99999999999999964 366666654444433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-31 Score=243.55 Aligned_cols=350 Identities=17% Similarity=0.136 Sum_probs=245.1
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh---ccchhHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYAPGLGVLLV 78 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~ 78 (436)
..+.+|+++++ +|+|+.+.|++.+.+.+++.+++++.|++.||+||||++..+.++++++++++ .++++++.+++
T Consensus 45 ~~~~~p~i~~~--~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~ 122 (438)
T PRK10133 45 NDILLPQFQQA--FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 35678999877 99999999999999999999999999999999999999999999999999875 46889999999
Q ss_pred HHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccc-c-----------------c----
Q 013779 79 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN-A-----------------V---- 136 (436)
Q Consensus 79 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~-~-----------------~---- 136 (436)
+|+++|++.+...+..++++.|+.++++|.+.+++.+....+|..+++.+++.+.. . .
T Consensus 123 ~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~ 202 (438)
T PRK10133 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKH 202 (438)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHH
Confidence 99999999999999999999998877777778999999999999999998765430 0 0
Q ss_pred ---ccchHHHhhhhHHHH-HHHHH-HhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHH
Q 013779 137 ---GGWRYMYGLSAPLAL-LMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 211 (436)
Q Consensus 137 ---~~w~~~f~~~~~~~~-~~~~~-~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (436)
.+||++|+....+.. +..+. ....||.+. ++
T Consensus 203 ~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~---------------------------------~~----------- 238 (438)
T PRK10133 203 SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS---------------------------------DN----------- 238 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---------------------------------cc-----------
Confidence 156667764333333 32222 223343211 00
Q ss_pred hhhhccccccccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHH-Hh-cCCCcchhhHHHHHHHHHHHHHH
Q 013779 212 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QS-AGFSAAADATRVSVVIGVFKLVM 289 (436)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 289 (436)
+++.+..+...+.++++++|.++...+..++...... ....|.+.++ ++ .+.++ .+.+.......++.+++
T Consensus 239 --~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~l~~~~~g~s~-~~ag~~~~~~~~~~~vG 311 (438)
T PRK10133 239 --HSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT----ACWSYLIRYAVEEIPGMTA-GFAANYLTGTMVCFFIG 311 (438)
T ss_pred --cccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHH
Confidence 0000000111234567888887765544433333222 2344556554 44 56665 88899999999999999
Q ss_pred HHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchh
Q 013779 290 TWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRG 369 (436)
Q Consensus 290 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 369 (436)
+++.+++.||+++|+++..+..+..+.+...... ... ..+..+.+. +.......|..++...|..|+ +.+++
T Consensus 312 ~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~l~-glg~~~i~P~~~s~a~~~~~~-~~~~a 383 (438)
T PRK10133 312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----GGH-VGLIALTLC-SAFMSIQYPTIFSLGIKNLGQ-DTKYG 383 (438)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----CCh-HHHHHHHHH-HHHHHHHHHHHHHHHHcccch-hhccc
Confidence 9999999999999998777765555444333221 121 222233333 333344455666888888774 46778
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHhC-cchhHHHHHHHHHHHHh
Q 013779 370 ISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVL 413 (436)
Q Consensus 370 ~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~ 413 (436)
.++.. ...+|+.++|.+.|.+.|..| .+..|++...+.+....
T Consensus 384 s~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 384 SSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred hhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 88776 455788999999999999887 66777655555444433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=245.94 Aligned_cols=359 Identities=14% Similarity=0.063 Sum_probs=250.5
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHH-HHHHHHHHHHHHHHhccc---hhH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKRE-LIIAAVLYALGALTTAYA---PGL 73 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~ 73 (436)
++.+|...++ .|.+.+++|.. +.....+ ++.+++|+++||+ ||||. +..+.+..+++..++++. +++
T Consensus 32 ~~~l~~~l~~--~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l 107 (491)
T PRK11010 32 SGTLQAWMTV--ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQL 107 (491)
T ss_pred HHHHHHHHHh--CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchH
Confidence 3456777776 78999999997 4444444 6899999999999 99985 667888777777777664 478
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHH
Q 013779 74 GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 153 (436)
Q Consensus 74 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~ 153 (436)
+.+.+.+++.|++.+...+...+++.|++|++||+++.++...+..+|.++++.++.++.+...|||..|++.++..++.
T Consensus 108 ~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~ 187 (491)
T PRK11010 108 RWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPC 187 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999998873239999999998887777
Q ss_pred HHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCC
Q 013779 154 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 233 (436)
Q Consensus 154 ~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (436)
.+..+++||+++.. ++++ .. ++....++++.++++
T Consensus 188 ~l~~~~~~e~~~~~----------------------------~~~~-----~~------------~~~~~~~l~~~~~~~ 222 (491)
T PRK11010 188 IIATLLAPEPTDTI----------------------------PVPK-----TL------------EQAVVAPLRDFFGRN 222 (491)
T ss_pred HHHHHhcCCCcccc----------------------------cccc-----ch------------hhhHHHHHHHHHcCc
Confidence 66656677754200 0000 00 000011345566666
Q ss_pred chhHHHHHHHHHHHHHHhChhhHHhchHHHH-HhcCCCcchhhHHHH-HHHHHHHHHHHHHHHHHHhhcCCccEeehhhH
Q 013779 234 NLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVS-VVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 311 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 311 (436)
+.+.......+...... ....+.+.++ ++.|.+. .+.+... ....++.+++.+++|++.||+++|+.+..+..
T Consensus 223 ~~~~~ll~~~l~~~~~~----~~~~~~~~~l~~~~G~s~-~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~ 297 (491)
T PRK11010 223 NAWLILLLIVLYKLGDA----FAMSLTTTFLIRGVGFDA-GEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGI 297 (491)
T ss_pred CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 65554443333322221 2333445554 5577776 6777776 45567999999999999999999887665554
Q ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHH
Q 013779 312 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 391 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 391 (436)
+.++....+..... ..++.+.......+...+.+.... ..+++..+..|++.+++..|+.+....+|..+++.+.|.+
T Consensus 298 l~~l~~l~~~~l~~-~~~~~~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l 375 (491)
T PRK11010 298 LQGVSNAGYWLLSI-TDKNLYSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWF 375 (491)
T ss_pred HHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443332221111 111222222122222222222222 3347778888989999999999999999999999999999
Q ss_pred HHHhCcchhHHHHHHHHHHHHhheeE
Q 013779 392 KELLGAENIFLLFAAIAFLAVLFIVR 417 (436)
Q Consensus 392 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 417 (436)
.|..||...|.+.+++.+++.++...
T Consensus 376 ~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 376 VEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999898888888887665543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=239.03 Aligned_cols=346 Identities=15% Similarity=0.112 Sum_probs=253.9
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHHhccchhHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL----IIAAVLYALGALTTAYAPGLGVLLV 78 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (436)
.|.+|.+.+| +|.|.+++|++.+.+.+...++++++|+++||+|||+.. ..+..+..+ ..+..+++++.+++
T Consensus 24 ~p~l~~~l~~--~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~ 99 (382)
T TIGR00902 24 LPFFPAWLKG--IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFI 99 (382)
T ss_pred HHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHH
Confidence 4677888887 999999999999999999999999999999999985433 233222222 24456789999999
Q ss_pred HHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh
Q 013779 79 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 158 (436)
Q Consensus 79 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~ 158 (436)
.|+++|.+.+...|...++..++ +++|++..+....+.++|.+++|++++.+.+.. |||..|++.....++..+ .+
T Consensus 100 ~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~~~f~~~~~~~~~~~~-~~ 175 (382)
T TIGR00902 100 AIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQNILAILTAGLAFMLI-GF 175 (382)
T ss_pred HHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHHHHHHHHHHHHH-HH
Confidence 99999999988899998887764 478899999999999999999999999999887 999999887655333332 33
Q ss_pred cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHH
Q 013779 159 SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAF 238 (436)
Q Consensus 159 ~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (436)
.++|+++ + +++ ++ ++++++..+.++++|+|+++..
T Consensus 176 ~~~~~~~-------------~------------------~~~-~~-------------~~~~~~~~~~~~~l~~~~~~~~ 210 (382)
T TIGR00902 176 LIKPTIP-------------P------------------KDA-IP-------------EDESQGDSAFIALLKNPMNLRF 210 (382)
T ss_pred HcCCCCC-------------C------------------Ccc-cc-------------ccccccchhHHHHHcChHHHHH
Confidence 3333321 0 000 00 0000112235678899888777
Q ss_pred HHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHH
Q 013779 239 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 318 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 318 (436)
.+...+...... ....+.|.++++.|.+. ...+.......+..+++..+.+++.||+++|+.+..+.....+...
T Consensus 211 l~~~~l~~~~~~----~~~~~~~~~l~~~g~s~-~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~ 285 (382)
T TIGR00902 211 LAAVCLIQGAHA----AYYGFSAIYWQAAGISA-SATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWA 285 (382)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 665555444332 35557788888888877 7788888888899999999999999999999998888888888776
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHH-HHHHHHHHHHHhhHHHHHHhCc
Q 013779 319 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL-TNFGSNAIVTFAFSPLKELLGA 397 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~g~ 397 (436)
.+... ++.+..+....+-...++. ..+....++++. |+++++++.++.+. ...+|..++|.+.|.+.|..|+
T Consensus 286 ~~~~~-----~~~~~~~~~q~l~g~~~~~-~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~ 358 (382)
T TIGR00902 286 IIGAI-----EAFPLIFLLQILHCGTFAV-CHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA 358 (382)
T ss_pred HHHhH-----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 66532 2333334344444444443 334455788887 98999999999874 5678999999999999999986
Q ss_pred chhHHHHHHHHHHHHhh
Q 013779 398 ENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 398 ~~~~~~~~~~~~~~~~~ 414 (436)
..|...+++.+++.++
T Consensus 359 -~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 359 -GTFVFMAIIAAAAFFL 374 (382)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 6677777777765443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=242.00 Aligned_cols=361 Identities=14% Similarity=0.089 Sum_probs=249.0
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR-KRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
++..+.+.++ +|+|.+|+|++.+++.++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+++.|+
T Consensus 23 ~~l~~~l~~~--~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00889 23 VTLGSYMSKT--LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLL 100 (418)
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4556667676 89999999999999999999999999999999965 77888888888888888889999999999999
Q ss_pred HHhhhhhhhhhhhhhHhh--------hcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHH
Q 013779 82 LYGLGIGLAMHGAPLYIA--------ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 153 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~ 153 (436)
+.|++.+...+...++.. |......|.+..| .+|.+++|.+++.+.... .|+ +|++.++..++.
T Consensus 101 l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~-~~~-~f~~~~~~~~~~ 172 (418)
T TIGR00889 101 ANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL-SNI-QLYITAGSSALL 172 (418)
T ss_pred HHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc-hhH-HHHHHHHHHHHH
Confidence 999988877777666542 2222334445444 468888888888763222 454 455666655555
Q ss_pred HHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCC
Q 013779 154 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 233 (436)
Q Consensus 154 ~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (436)
.+..+++||+|+- + ++ ++. + .++..+.+.++++|+|
T Consensus 173 ~~~~~~~~e~~~~-------------~---------------~~-~~~---~------------~~~~~~~~~~~~~k~~ 208 (418)
T TIGR00889 173 GVFALTLPDIPVA-------------K---------------ST-AKM---S------------IKVMLGLDAFILFKNK 208 (418)
T ss_pred HHHHhcCCCCCCC-------------c---------------cc-ccc---C------------HHHHhhhhHHHHhcCC
Confidence 5555677876530 0 00 000 0 0000011234577888
Q ss_pred chhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCc-------chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEe
Q 013779 234 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSA-------AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 306 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 306 (436)
+++...+..++...... ....+.+.++++.+.++ ....+...+...+..+++.+..+++.||+++|+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l 284 (418)
T TIGR00889 209 RMAIFFFFSMLLGAPLQ----ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVM 284 (418)
T ss_pred CeeeHHHHHHHHHhHHH----HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 77666555444433221 23355566677766442 14568888888899999999999999999999998
Q ss_pred ehhhHHHHHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHH-HHHHHHHHH
Q 013779 307 IGGVCGIALSLLLLSAYYKILGGFP--LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNAI 383 (436)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~ 383 (436)
..+..+..++..++... .... ...+....+..+.......+....++.|.+|++.|+++.|+.+ ....+|..+
T Consensus 285 ~~~~~~~~v~~~l~~~~----~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i 360 (418)
T TIGR00889 285 LLSLVAWALRFGFFAYG----DPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL 360 (418)
T ss_pred HHHHHHHHHHHHHHHHc----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 88887777765554431 1111 1222222222332222334454578899999999999999997 567899999
Q ss_pred HHHhhHHHHHHh------CcchhHHHHHHHHHHHHhheeEecccCCCC
Q 013779 384 VTFAFSPLKELL------GAENIFLLFAAIAFLAVLFIVRTVPETKGL 425 (436)
Q Consensus 384 ~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (436)
+|.+.|.+.|.. ||+..|.+.+++.+++.++.+++.+|++++
T Consensus 361 Gp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 361 GYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999985 477888888888888777777777766544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-30 Score=235.32 Aligned_cols=345 Identities=15% Similarity=0.100 Sum_probs=227.3
Q ss_pred cccCc-ccCccccccchhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHhccchhHHHHHHHH
Q 013779 4 AQSPE-LSGTTWFNLSAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKREL-IIAAVLYALGALTTAYAPGLGVLLVGR 80 (436)
Q Consensus 4 ~~~p~-i~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r 80 (436)
|.+|. +.++ +|.|++++|++.+...+ +..++.+++|+ +||+||||.+ ..+.++.+++..+.+++++++.+++.+
T Consensus 36 p~~~~~l~~~--~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (393)
T PRK15011 36 PTLSIFLTDE--VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVG 112 (393)
T ss_pred HHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444 4555 99999999999876655 56666655666 9999999875 456666678888888899999887666
Q ss_pred HHHhhhhhhhhhhhhhHhhhcCcccch--hhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-
Q 013779 81 LLYGLGIGLAMHGAPLYIAETCPSQIR--GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM- 157 (436)
Q Consensus 81 ~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~- 157 (436)
.+.|...+...|...++..|+.++++| +...++.+.+.++|.+++|++++.+.+.. |||..|++.++.+++..+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 113 VFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-SFTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHH
Confidence 655555567788888888888876655 34568889999999999999999988877 99999999988777765554
Q ss_pred hcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCC-chh
Q 013779 158 WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP-NLK 236 (436)
Q Consensus 158 ~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 236 (436)
+++||+++- + +. .. + +.+ . ..+++ ..+
T Consensus 192 ~~~~~~~~~-------------~---------------~~-~~--------------~--~~~----~---~~~~~~~~~ 219 (393)
T PRK15011 192 LFLPSMRKE-------------L---------------PL-AT--------------G--TLE----A---PRRNRRDTL 219 (393)
T ss_pred hhcCccCCC-------------C---------------cc-cc--------------c--ccc----c---cccccccHH
Confidence 456765420 0 00 00 0 000 0 00111 112
Q ss_pred HHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHH
Q 013779 237 AFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 315 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 315 (436)
........... .......+.|.++++ .+.+. .+.+.......+..+++.++.|+++||++||+.+..+.....+
T Consensus 220 ~~~~~~~~~~~----~~~~~~~~~p~~l~~~~~~~~-~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 294 (393)
T PRK15011 220 LLFVICTLMWG----TNSLYIINMPLFIINELHLPE-KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVC 294 (393)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 22111111111 122344567777754 56665 6677777777778888999999999999999876555444333
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHh
Q 013779 316 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 395 (436)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 395 (436)
....+. . . ++.+..+....+.....+.. .+....+..|..| ++++++.++.+...++|..++|.+.|.+.|..
T Consensus 295 ~~~~~~-~---~-~~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~ 367 (393)
T PRK15011 295 FYAGML-M---A-HSPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW 367 (393)
T ss_pred HHHHHH-H---H-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 322211 1 1 22222222222221222211 1223356778888 46999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHhhee
Q 013779 396 GAENIFLLFAAIAFLAVLFIV 416 (436)
Q Consensus 396 g~~~~~~~~~~~~~~~~~~~~ 416 (436)
|++..+...+++.+++.+..+
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 368 NYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 998888887777777665443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=238.36 Aligned_cols=331 Identities=18% Similarity=0.167 Sum_probs=226.6
Q ss_pred cccccCc-ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch-hHHHHHHH
Q 013779 2 IIAQSPE-LSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-GLGVLLVG 79 (436)
Q Consensus 2 ~~~~~p~-i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~ 79 (436)
+++.+|. ++++ +|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+.++.++.+++.+++++++ +++.+++.
T Consensus 20 ~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (366)
T TIGR00886 20 FSPLAVQMIKDD--LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLL 97 (366)
T ss_pred hHHhhhHHHHHH--hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4677885 7777 999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccc---------cccchHHH-hhhhHH
Q 013779 80 RLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---------VGGWRYMY-GLSAPL 149 (436)
Q Consensus 80 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~---------~~~w~~~f-~~~~~~ 149 (436)
|+++|++.+ ..+...+++.|++|+++|+++.++.....++|..+++.+++.+... ..+||+.| +..++.
T Consensus 98 ~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~ 176 (366)
T TIGR00886 98 RLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGI 176 (366)
T ss_pred HHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence 999999966 4566788999999999999999999988888888777776655431 12799999 444544
Q ss_pred HHHHH-HHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchh
Q 013779 150 ALLMG-IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLE 228 (436)
Q Consensus 150 ~~~~~-~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (436)
..+.. +...+.+|+|+. +++++ +. +.+.. .+. .+++.....++
T Consensus 177 ~~~~~~~~~~~~~~~~~~-------------~~~~~-~~-----~~~~~-~~~----------------~~~~~~~~~~~ 220 (366)
T TIGR00886 177 LLLPALLIFFVGADTPPG-------------KPATG-KL-----SFKGA-RWS----------------VGTGALGDQLK 220 (366)
T ss_pred HHHHHHHHHHhcccCCcc-------------cccch-hc-----ccccc-ccc----------------ccchhHHHHHH
Confidence 44443 333456665530 00000 00 00000 000 00000013455
Q ss_pred hccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEee
Q 013779 229 VFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI 307 (436)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 307 (436)
.+++++++...+......... .....+.|.++++ .+.+. .+.+.......+..++++++.+++.||+++|+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~ 295 (366)
T TIGR00886 221 VFRDRHTWILALLYSVTFGSF----LGVSSIFAMFFKDQFGLSK-VTAGAYASLGGLLGSLARPLGGAISDRLGGARKLL 295 (366)
T ss_pred HHhccchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHhhccchHHHhhccchhHH
Confidence 677777666554443333322 2355667777765 46665 67888888888999999999999999999998777
Q ss_pred hhhHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHH
Q 013779 308 GGVCGIALSLLLLSAYYKILGG-FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 380 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 380 (436)
.+......+..++.... ..+ +...............+... +..+....+..| +++|++.|+.+..+++|
T Consensus 296 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 296 MSFLGVAMGAFLVVLGL--VSPLSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 66655555444443221 001 12222222222222333333 345577888877 78999999998887765
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=236.88 Aligned_cols=332 Identities=15% Similarity=0.140 Sum_probs=237.5
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+.|.+|.+.++ +|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+..+.+++.+++.++++++.+++.|+
T Consensus 27 ~~p~~~~i~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (394)
T PRK11652 27 YVPAIADMARD--LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASA 104 (394)
T ss_pred HhccHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 34677888888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHH-HhcC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG-MWSL 160 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~-~~~~ 160 (436)
+.|++.+...+....+..|.+++++++++.++...+..+|..++|.+++.+.+.. +||+.|++.++..++..+. .++.
T Consensus 105 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~ 183 (394)
T PRK11652 105 IQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGAGVTFSMARWM 183 (394)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999888888889999999999999999999999999999999999988776 9999999988776655443 3456
Q ss_pred CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHH
Q 013779 161 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 161 ~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
||+++. ++ + +++.+..+++.+|+|+++...+
T Consensus 184 ~~~~~~-------------~~------------------~------------------~~~~~~~~~~~~~~~~~~~~~~ 214 (394)
T PRK11652 184 PETRPA-------------DA------------------R------------------RTRVLASYRTLLSNRRFNCYLL 214 (394)
T ss_pred CccCcc-------------cc------------------c------------------hhHHHHHHHHHHcChHHHHHHH
Confidence 765420 00 0 0001123445667776665444
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 319 (436)
........ ......+.+.++++ .+.+. .+.+.......++.+++..+.+++.||.+++.. .......+....
T Consensus 215 ~~~~~~~~----~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 287 (394)
T PRK11652 215 MLIGTLAG----IAVFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLL 287 (394)
T ss_pred HHHHHHHH----HHHHHHhChHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 33222221 12234455556666 56665 677887778888888899999999999873322 222222222222
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 013779 320 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 394 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 394 (436)
+.........+.+.......+...+.+ ...|...++..|.+| ++++++.++.+....+|..+++.+.+.+.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 288 MWIPGWFGVMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 111110011122222333333333333 334555577778877 6789999999999999999999988877554
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=241.46 Aligned_cols=353 Identities=20% Similarity=0.210 Sum_probs=242.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhh
Q 013779 14 WFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 93 (436)
Q Consensus 14 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 93 (436)
|.+....+.|.+.++++++++++++++|.|.||++..+.+....+.+++-.++....+|++.+++.|++.|+.++..+|.
T Consensus 75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~ 154 (495)
T KOG2533|consen 75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPG 154 (495)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchH
Confidence 38999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred hhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccc-----ccccchHHHhhhhHHHHHHHHHH-hcCCCChHHH
Q 013779 94 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN-----AVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWL 167 (436)
Q Consensus 94 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~-----~~~~w~~~f~~~~~~~~~~~~~~-~~~~es~~~l 167 (436)
...+++.|+.++||++.++++.+..++|.++|++++..+.+ ...||||.|++.++++++..++. +++|+.|.
T Consensus 155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~-- 232 (495)
T KOG2533|consen 155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS-- 232 (495)
T ss_pred HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh--
Confidence 99999999999999999999999999999999999988532 12299999999999999887655 57899885
Q ss_pred HHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHH
Q 013779 168 LLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLF 247 (436)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (436)
+.+..++.|+... .++.+..+ ....+++.++..+++.+++|..|...+..++...
T Consensus 233 -------~~~fl~~~ek~~~-~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~l 287 (495)
T KOG2533|consen 233 -------KAWFLTDEEKELV-VERLRESP-----------------SGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKL 287 (495)
T ss_pred -------hccccchHHHHHH-HHHHHhcc-----------------CCCcccccCHHHHHHHHhchhHHHHHHHHHHHhh
Confidence 0011111111100 11111111 1111122455678899999998888765554444
Q ss_pred HHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc----CCccEeehhhHHHHHHHHHHHH
Q 013779 248 QQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL----GRRPLLIGGVCGIALSLLLLSA 322 (436)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----~~~~~~~~~~~~~~~~~~~~~~ 322 (436)
..+.+.+|+|.++++ .+++. .++..+..+..++++++.+++|+++||. .+|........+..........
T Consensus 288 ----v~~~~~~~lpl~l~~~~~~s~-~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~ 362 (495)
T KOG2533|consen 288 ----VNYGFSYWLPLYLKSNGGYSE-LQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLL 362 (495)
T ss_pred ----ccccHHHHHHHHHHcCCCcCh-HHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344688999999998 34555 7899999999999999999999999995 3443333333333332212111
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccc-cchhhHHHHHHHHHHHHHHHHhhHHH-HHHhCcchh
Q 013779 323 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT-RGRGISLAVLTNFGSNAIVTFAFSPL-KELLGAENI 400 (436)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~~~~-~~~~g~~~~ 400 (436)
. ...... ....++..........+......++....+. +-+..+........++.++|.+.... ...+++...
T Consensus 363 ~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~ 437 (495)
T KOG2533|consen 363 A----AAVLPG-AYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAV 437 (495)
T ss_pred h----hccchH-HhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhH
Confidence 1 111111 1111122112122223344455555544444 34444444545555555555554333 334567777
Q ss_pred HHH
Q 013779 401 FLL 403 (436)
Q Consensus 401 ~~~ 403 (436)
|..
T Consensus 438 f~~ 440 (495)
T KOG2533|consen 438 FYM 440 (495)
T ss_pred HHH
Confidence 733
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=234.41 Aligned_cols=346 Identities=16% Similarity=0.108 Sum_probs=243.9
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHhccchhHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK----RELIIAAVLYALGALTTAYAPGLGVLL 77 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~l~ 77 (436)
+.|.+|.+.+| +|.|.+++|++.+++.++..++++++|+++||+||| +.+.+..... .......+++++.++
T Consensus 23 ~~p~l~~~l~~--~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ 98 (382)
T PRK11128 23 FLPFWSVWLKG--QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLF 98 (382)
T ss_pred HhhhHHHHHHh--cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHH
Confidence 35677788887 899999999999999999999999999999999984 3333332222 223344568899999
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH
Q 013779 78 VGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 157 (436)
Q Consensus 78 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~ 157 (436)
+.|++.|++.+...|...++..++ +++|+++.+......++|..+||++++++.+.. |||..|++.++..++..+..
T Consensus 99 i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f~~~~~~~~~~~~~~ 175 (382)
T PRK11128 99 VAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAILWILTAGVASMLLGQ 175 (382)
T ss_pred HHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888876 456888889999999999999999999998887 99999988776555444433
Q ss_pred hcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhH
Q 013779 158 WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA 237 (436)
Q Consensus 158 ~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (436)
.+.||+++ + ++ ++++.++...++++++|+|.++.
T Consensus 176 ~~~~~~~~-------------~-------------------~~--------------~~~~~~~~~~~~~~i~~~~~~~~ 209 (382)
T PRK11128 176 LLRPTIMP-------------Q-------------------GE--------------SRQQESAGWPAWKALLKEPTVWR 209 (382)
T ss_pred HccCCCCC-------------c-------------------cc--------------cccccccccchHHHHHcChhHHH
Confidence 44444211 0 00 00000011235678899998887
Q ss_pred HHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHH
Q 013779 238 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 317 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 317 (436)
..+..++...... ....+.|.+.++.|.+. .+.+.......+..++..++.+++.||+++|+.+..+....++..
T Consensus 210 ~~~~~~l~~~~~~----~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~ 284 (382)
T PRK11128 210 FLLCVSLLQGSHA----AYYGFSAIYWQAAGYSA-STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRW 284 (382)
T ss_pred HHHHHHHHHHHhH----hHHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 6655444443322 24455677777877776 677888888888999999999999999999999887777766665
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHH-HHHHHHHHHHhhHHHHHHhC
Q 013779 318 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELLG 396 (436)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~g 396 (436)
..+... ++.+..+...++...+... ..+....+..+. +++++++..++.+.. ...|..++|.+.|.+.|..|
T Consensus 285 ~~~~~~-----~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g 357 (382)
T PRK11128 285 GLMGST-----TALPWLIVIQILHCGTFTV-CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG 357 (382)
T ss_pred HHHHhh-----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 544321 2333333333333333333 334444666676 556678888887644 56677899999999999998
Q ss_pred cchhHHHHHHHHHHHHh
Q 013779 397 AENIFLLFAAIAFLAVL 413 (436)
Q Consensus 397 ~~~~~~~~~~~~~~~~~ 413 (436)
+ ..++..+++.+++..
T Consensus 358 ~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 358 A-GVFWVMALVALPALF 373 (382)
T ss_pred H-HHHHHHHHHHHHHHH
Confidence 6 566666666555443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=238.20 Aligned_cols=352 Identities=16% Similarity=0.091 Sum_probs=224.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhc---cch-----hHHHHHHHHHHHhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---YAP-----GLGVLLVGRLLYGLG 86 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r~l~G~~ 86 (436)
+|+|+.+.|++.+.+.++..++++++|+++||+||||++.++..+.+++..... .++ .+....+.+++.|.+
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999999999887666554433221 111 111122333444443
Q ss_pred hhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCChHH
Q 013779 87 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRW 166 (436)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~~~ 166 (436)
.....+....+..+ . ++++++.++......++|..++|++++.+.+. +|+..|++.++++++..+..++.+++++
T Consensus 121 ~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~- 195 (420)
T PRK09528 121 FLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQINFWLGSGSALILLVLLFFAKPDAP- 195 (420)
T ss_pred hccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchHhHHHHHHHHHHHHHHHhccccccc-
Confidence 33333333333322 2 34567788899999999999999999988764 8999999988887776666555433221
Q ss_pred HHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHH
Q 013779 167 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 246 (436)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (436)
++ .+.. +++ ++++++.+.+..++.+|+|.++...+......
T Consensus 196 ------------~~-~~~~--------~~~------------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~ 236 (420)
T PRK09528 196 ------------ST-AKVA--------NAL------------------GANASAVSLKDALALLKLPKFWFLVLYVIGVA 236 (420)
T ss_pred ------------ch-hhhc--------cch------------------hcccccccHHHHHHHccCCCeEeehHHHHHHH
Confidence 00 0000 000 00000111122445677887765544332222
Q ss_pred HHHHhChhhHHhchHHHHHh----cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHH
Q 013779 247 FQQITGQPSVLYYAGPILQS----AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSA 322 (436)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 322 (436)
.... ....+.|.++.+ .+.+. ...+.......+...++.++.+++.||+++|+.+..+..+..+...++..
T Consensus 237 ~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~ 311 (420)
T PRK09528 237 CFYD----VFDQQFPNFFASFFATPEQGT-RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF 311 (420)
T ss_pred HHHH----HHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh
Confidence 2221 122233333332 23333 56678888888888999999999999999999887777776666555443
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHH-HHHHHHHHHHHHHHhhHHHHHHhCcchhH
Q 013779 323 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL-AVLTNFGSNAIVTFAFSPLKELLGAENIF 401 (436)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 401 (436)
. ++.+..+... ...+.......+....+..|.+|++.+++..+. .++...+|..++|.+.|.+.|..|++..|
T Consensus 312 ~-----~~~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f 385 (420)
T PRK09528 312 A-----TGPLEVSILK-LLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTY 385 (420)
T ss_pred c-----ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHH
Confidence 1 2333333222 222222222223334677888899999988766 57778899999999999999999999999
Q ss_pred HHHHHHHHHHHhheeEeccc
Q 013779 402 LLFAAIAFLAVLFIVRTVPE 421 (436)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~ 421 (436)
...+++.++..++.....++
T Consensus 386 ~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 386 LILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 98888877766655544444
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=231.94 Aligned_cols=354 Identities=18% Similarity=0.089 Sum_probs=243.1
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhH-HHHHHHHHHHHHHHHhccc---hhHH
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKR-ELIIAAVLYALGALTTAYA---PGLG 74 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~ 74 (436)
..+|.+-++ -|+|.+++|++..+... .+..+++|+++||+ |||| ++.++.++.+++..++++. .+++
T Consensus 20 ~~~~~~l~~--~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~ 95 (402)
T PRK11902 20 GTLQAWMTV--EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALW 95 (402)
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHH
Confidence 456777777 79999999999777775 69999999999999 8876 7888888888888777776 3578
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHH
Q 013779 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 154 (436)
Q Consensus 75 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~ 154 (436)
.+++..++.++..+...++..+++.|++|+|||+++.++...+.++|.++++.++..+.+...|||..|++.++..++..
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~ 175 (402)
T PRK11902 96 PLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGA 175 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999999999999998887753389999999888877665
Q ss_pred HHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCc
Q 013779 155 IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 234 (436)
Q Consensus 155 ~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (436)
+..++.||+++. ++ +++ +. +++...++++++|+|.
T Consensus 176 l~~~~~~e~~~~-------------~~----------------~~~----~~------------~~~~~~~~~~l~~~~~ 210 (402)
T PRK11902 176 LTTLWAPEPEVP-------------AR----------------PPR----SL------------GEAVVGPLRDFFSRRG 210 (402)
T ss_pred HHHHhcCCCccc-------------cc----------------ccc----hh------------HHHHHHHHHHHHhCcC
Confidence 555566665320 00 000 00 0001123567788888
Q ss_pred hhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHH-HHHHHHHHHHHHHHhhcCCccEeehhhHHH
Q 013779 235 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG-VFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 313 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 313 (436)
++...+...+....... ......+.+.++.|.+. .+.+......+ ++.+++.++.+++.||+++|+.+..+..+.
T Consensus 211 ~~~~l~~~~l~~~~~~~---~~~~~~~~l~~~~G~~~-~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~ 286 (402)
T PRK11902 211 AWALLLLIVLYKLGDAF---AGSLSTTFLIRGAGFSA-GEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQ 286 (402)
T ss_pred HHHHHHHHHHHHhHHHH---HHHHHHHHHHHhcCCCH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 77666544444332221 11222334455577765 66777765544 568899999999999999998766555554
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHH---HHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHH
Q 013779 314 ALSLLLLSAYYKILGGFPLVAVSALL---LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 390 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 390 (436)
.+..+.+..... ..++.+....... +..+............++.+.+|.+. .++.+....++...++.+.|.
T Consensus 287 ~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~ 361 (402)
T PRK11902 287 AVSNLGYWVLAV-TPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGY 361 (402)
T ss_pred HHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 444333322111 1122222222221 12222222333344466677666544 455555666777767778999
Q ss_pred HHHHhCcchhHHHHHHHHHHHHhhe
Q 013779 391 LKELLGAENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 391 ~~~~~g~~~~~~~~~~~~~~~~~~~ 415 (436)
+.|..|+...|...+.+.+++.++.
T Consensus 362 l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 362 LVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888887776654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=227.28 Aligned_cols=354 Identities=14% Similarity=0.084 Sum_probs=236.9
Q ss_pred cccCccc-CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh---ccc-----hhHH
Q 013779 4 AQSPELS-GTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYA-----PGLG 74 (436)
Q Consensus 4 ~~~p~i~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-----~~~~ 74 (436)
|.+|... ++ +|.|+.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++.... .+. +.+.
T Consensus 23 ~~~~~~~~~~--~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (396)
T TIGR00882 23 PFFPIWLHDV--NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILV 100 (396)
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444443 34 89999999999999999999999999999999999999988776665544322 122 1234
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHH
Q 013779 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 154 (436)
Q Consensus 75 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~ 154 (436)
.+.+.|++.|++.+...+....+..|.. +++++..+......++|.+++|.+++.+.+ . +||..|++.+.+.++..
T Consensus 101 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~-~~~~~f~~~~~~~~~~~ 176 (396)
T TIGR00882 101 GAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-I-DPQIVFWLGSGFALILM 176 (396)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-c-CchHHHHHHHHHHHHHH
Confidence 5667789999998888888888877743 334567778888889999999999998765 3 89999999988888776
Q ss_pred HHHhc-CCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCC
Q 013779 155 IGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 233 (436)
Q Consensus 155 ~~~~~-~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (436)
+..+. .||+|+. ++..+ . .+.++++.+..+.++++|+|
T Consensus 177 ~~~~~~~~~~~~~----------------~~~~~-------~------------------~~~~~~~~~~~~~~~~l~~~ 215 (396)
T TIGR00882 177 LLLMFAKPKAPSS----------------ATVAN-------A------------------LGANASAFSLKLALELFRQR 215 (396)
T ss_pred HHHHHhCCCCchh----------------hhhhc-------c------------------cccccCCCCHHHHHHHHcCC
Confidence 55544 3333210 00000 0 00000111122456788888
Q ss_pred chhHHHHHHHHHHHHHHhChhhHHhchHHHHHhc----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehh
Q 013779 234 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA----GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGG 309 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 309 (436)
+++...+......... .....+.+.++++. +.+. ...+.......+...++....+++.||+++|+.+..+
T Consensus 216 ~~~~~~l~~~~~~~~~----~~~~~~~~~y~~~~~~~~~~~~-~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~ 290 (396)
T TIGR00882 216 KFWMFVLYVVGVACVY----DVFDQQFANFFTSFFATPQQGT-RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIA 290 (396)
T ss_pred cHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 7765544333222222 12323445555443 2232 4567778888888888999999999999999998877
Q ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHH-HHHHHHHHHHHHHHhh
Q 013779 310 VCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL-AVLTNFGSNAIVTFAF 388 (436)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~ 388 (436)
..+.++....... ..+.+.......+ .+............+..+..|++.++++.+. .+....+|+.+++.+.
T Consensus 291 ~~l~~l~~~~~~~-----~~~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~ 364 (396)
T TIGR00882 291 GTIMSVRIIGSSF-----ATTALEVVILKML-HAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLA 364 (396)
T ss_pred HHHHHHHHHHHHh-----cCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhH
Confidence 7766665554332 1233333333222 2222212222233456677788888887776 5778999999999999
Q ss_pred HHHHHHhCcchhHHHHHHHHHHHHhhe
Q 013779 389 SPLKELLGAENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 389 ~~~~~~~g~~~~~~~~~~~~~~~~~~~ 415 (436)
|++.|..|++.+|.+.+++.++..++.
T Consensus 365 G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 365 GNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888887776543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=221.24 Aligned_cols=352 Identities=14% Similarity=0.084 Sum_probs=260.3
Q ss_pred cCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhh
Q 013779 10 SGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGL 89 (436)
Q Consensus 10 ~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 89 (436)
+++++.+-+++++|++.+...+.+.+.+++.|.+.||+|+|-.+++|++....+++++++..+++.++++|.+||+|.+.
T Consensus 96 ~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~ 175 (464)
T KOG3764|consen 96 AEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAF 175 (464)
T ss_pred hhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHH
Confidence 34445778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHhhhcCcc-cchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCChHHHH
Q 013779 90 AMHGAPLYIAETCPS-QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLL 168 (436)
Q Consensus 90 ~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~ 168 (436)
..++..++++|.+|+ +||++++|+...+.++|.++||++|+.+.+.. |.+.+|++.++++++-..+.+++-|..+
T Consensus 176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPFlVL~~v~Lld~~L~l~vi~p~~--- 251 (464)
T KOG3764|consen 176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPFLVLAIVLLLDGALQLLVIEPTE--- 251 (464)
T ss_pred HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcHHHHHHHHHHHHHHHHheeCccc---
Confidence 999999999999986 45799999999999999999999999999988 9999999999999998777665433211
Q ss_pred HHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHHH
Q 013779 169 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 248 (436)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (436)
.+++++.+..++++++++|..+............
T Consensus 252 ----------------------------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~ 285 (464)
T KOG3764|consen 252 ----------------------------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSS 285 (464)
T ss_pred ----------------------------------------------cCccccccCccHHHHHhCchHhhhhcchhhccch
Confidence 0011233445688899999776555443333332
Q ss_pred HHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHc
Q 013779 249 QITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG 328 (436)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (436)
.. ...--++.++.+.-..+..+.++......+...++..+.|.+.||++..+.+.....+..++........ ...
T Consensus 286 la----fLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~-~~~ 360 (464)
T KOG3764|consen 286 LA----FLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPF-ATS 360 (464)
T ss_pred HH----HhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHh-hhh
Confidence 21 2223334445554445545889999999999999999999999999954443332222222222211111 000
Q ss_pred CC-chHHHHHHHHHHHHhhcccccccchhccccCCcc---ccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHH
Q 013779 329 GF-PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLF 404 (436)
Q Consensus 329 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~ 404 (436)
.. -+.....+.+..+.......|.. .+..|.-..+ ..|...++......+|.++||.+.|.+.+..|+.+...+.
T Consensus 361 ~~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii 439 (464)
T KOG3764|consen 361 IAQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII 439 (464)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence 11 12222233333333444445555 3444433334 6789999999999999999999999999999999988888
Q ss_pred HHHHHHHHhheeE
Q 013779 405 AAIAFLAVLFIVR 417 (436)
Q Consensus 405 ~~~~~~~~~~~~~ 417 (436)
+...++.+-++.+
T Consensus 440 g~~n~iyapvl~l 452 (464)
T KOG3764|consen 440 GILNLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777655433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-28 Score=250.52 Aligned_cols=339 Identities=16% Similarity=0.031 Sum_probs=238.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhh
Q 013779 20 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII---AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPL 96 (436)
Q Consensus 20 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 96 (436)
...++..+++.+++.++++++|+++||+|||+++.. ..+...+..+.....++++.++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 457888999999999999999999999999997533 22333333333334589999999999999999999999999
Q ss_pred HhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCChHHHHHHhhcCcC
Q 013779 97 YIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKG 176 (436)
Q Consensus 97 ~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~ 176 (436)
++.|++++++|++++++.+++.++|.++||++++++.... +|++.|+..++..++..++.+++|+++.- +
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~- 201 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG-NFVILVALLMGIAVLGWLASLFIPKTGNA--------A- 201 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHhhCCCCCCC--------C-
Confidence 9999999999999999999999999999999999998877 99999966655556555555667664320 0
Q ss_pred ccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHHHHHhChhhH
Q 013779 177 SLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSV 256 (436)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (436)
+ .... .... .+.....++.+.+++.++...+...+.++... .+
T Consensus 202 -------------------~-~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 244 (1140)
T PRK06814 202 -------------------P-DLKI-DRNI------------IRSTITLLKYAKADKRIWLAILGISWFWLVGA----VV 244 (1140)
T ss_pred -------------------C-CCee-ccch------------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH----HH
Confidence 0 0000 0000 00011235667788887776665555444332 35
Q ss_pred HhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHH-----------
Q 013779 257 LYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY----------- 324 (436)
Q Consensus 257 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 324 (436)
..+.|.++++ .+.+. ...+.+.+..+++.+++.++.+++.|+..+++.+..+.++.+++.+.+....
T Consensus 245 ~~~~p~~~~~~~g~~~-~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (1140)
T PRK06814 245 LSQLPLLAKETLGGDE-NVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK 323 (1140)
T ss_pred HHHhHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence 5577888876 45554 7889999999999999999999999888777766666555555444333210
Q ss_pred ----HHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH-hCcch
Q 013779 325 ----KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGAEN 399 (436)
Q Consensus 325 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~g~~~ 399 (436)
.....+.+...+..+++ +.......+...+++++..|++.+|+++|+.++..+++..+++.+.+.+.+. .++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~ 402 (1140)
T PRK06814 324 SILVFLSKRHGWRILIDLFGL-AAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPW 402 (1140)
T ss_pred chhhhhcccccHHHHHHHHHH-HHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 00012223333333333 3333344444568899999999999999999999999999999999988753 34444
Q ss_pred hHHHHHHH
Q 013779 400 IFLLFAAI 407 (436)
Q Consensus 400 ~~~~~~~~ 407 (436)
.+++.+.+
T Consensus 403 ~~~~~~~~ 410 (1140)
T PRK06814 403 IILFIALA 410 (1140)
T ss_pred HHHHHHHH
Confidence 45444443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=222.81 Aligned_cols=322 Identities=15% Similarity=0.010 Sum_probs=223.5
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHH-HHHHHHHHHHHHHHhccc---hh
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKRE-LIIAAVLYALGALTTAYA---PG 72 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~ 72 (436)
+++.+|.+.+| +|+|.+|+|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++....++. .+
T Consensus 7 ~~~~~~~~~~~--~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 7 VGNTLPYWLRS--KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred HHhHHHHHHHH--cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 45678889888 89999999999766 555555 99999999998 89987 567788888887777776 46
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccccc--------chHHHh
Q 013779 73 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG--------WRYMYG 144 (436)
Q Consensus 73 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~--------w~~~f~ 144 (436)
.+.+....++.+++.+...++..+++.|++|+|+|+++.++...+.++|.++++.+++.+.+.. + ||..|+
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-g~~~~~~~~wr~~f~ 161 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE-FANTGLITLWGYIFF 161 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccHHHHH
Confidence 6778888888999999999999999999999999999999999999999999999998887766 6 999999
Q ss_pred hhhHHHHHHHHHHhc-CCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhcccccccc
Q 013779 145 LSAPLALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE 223 (436)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (436)
+.++..++..+..++ .||+++. ++ + ++++ +++.+
T Consensus 162 i~ai~~l~~~~~~~~~~~e~~~~----------------------------~~--~--~~~~-------------~~~~~ 196 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEPQED----------------------------AS--V--PKPL-------------TQAVL 196 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCcc----------------------------cc--c--chhH-------------HHHHH
Confidence 998877776555443 4553210 00 0 0000 00001
Q ss_pred ccchhhccCCc---hhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHH-HHHHHHHHHHHHHHhh
Q 013779 224 GSFLEVFQGPN---LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG-VFKLVMTWIAVAKVDD 299 (436)
Q Consensus 224 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~ 299 (436)
..++++++++. .+...+...+..+ .+.....+.|.++++.|.+. .+.+......+ +..+++.++++++.||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~g~~~-~~~g~~~~~~~~~~~~~g~~~~g~l~~r 271 (356)
T TIGR00901 197 KPIREFFQRKNMIQALLLLLLIVLYKL----GDSAATVLTTLFLLDMGFSK-EEIALVAKINGLLGAILGGLIGGIIMQP 271 (356)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCH-HHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 13445566665 3333322222222 22345567777888777776 66666666554 5778999999999999
Q ss_pred cCCccEeehhhHHHHHHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHH
Q 013779 300 LGRRPLLIGGVCGIALSLLLLSAYYKILGG-----FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 374 (436)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 374 (436)
+++|+.+..+..+.++....+......... +....+....+..+.......+...++..|.+|+++||+.+|+.+
T Consensus 272 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 351 (356)
T TIGR00901 272 LNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLS 351 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 999988777776666655444332110000 122223333333333333444566699999999999999999988
Q ss_pred HHHH
Q 013779 375 LTNF 378 (436)
Q Consensus 375 ~~~~ 378 (436)
...+
T Consensus 352 ~~~~ 355 (356)
T TIGR00901 352 SLSA 355 (356)
T ss_pred HHHh
Confidence 7654
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=206.32 Aligned_cols=348 Identities=19% Similarity=0.210 Sum_probs=266.4
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhc---cchhHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---YAPGLGVLLV 78 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~ 78 (436)
..+.+|++++. |++|..|.+++..+++.++.+.+++.|++.+|+|+|+.++.+..++++++.+.. ...++..+++
T Consensus 32 ~diLip~l~~~--f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~ 109 (422)
T COG0738 32 NDILIPHLKEV--FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV 109 (422)
T ss_pred chhhHHHHHHH--hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 45788999988 999999999999999999999999999999999999999999999999999984 5678999999
Q ss_pred HHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccc------------------cccch
Q 013779 79 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA------------------VGGWR 140 (436)
Q Consensus 79 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~------------------~~~w~ 140 (436)
+-++.|.|.+...++.++++....++++..+.+++.+...++|.+++|++++.++.+ ...||
T Consensus 110 ~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~ 189 (422)
T COG0738 110 ALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQ 189 (422)
T ss_pred HHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999998999999999999999999999999988763 11588
Q ss_pred HHHhhhhHHHHHHHHHHhc--CCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccc
Q 013779 141 YMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT 218 (436)
Q Consensus 141 ~~f~~~~~~~~~~~~~~~~--~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
++|...+...++..+.... .|+.+. .++++
T Consensus 190 ~pYl~~~~~lvll~v~~~~~k~p~~~~------------------------------------------------~~~~~ 221 (422)
T COG0738 190 FPYLILAGLLVLLAVLILLSKLPDLQV------------------------------------------------AAPSL 221 (422)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCcCCc------------------------------------------------ccccc
Confidence 8888888777776665543 333211 00001
Q ss_pred cccccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013779 219 DEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD 298 (436)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 298 (436)
.+.++....+++++|+++...++.+++...... .-.|.+.++.+....+..++....+....+.++|++++.++..
T Consensus 222 ~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva----~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~ 297 (422)
T COG0738 222 GASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVA----IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMS 297 (422)
T ss_pred cccccchHHHHHhChHHHHHHHHHHHHHhHHHH----HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112567889999998888777777766654 6667777788744334488999999999999999999999999
Q ss_pred hcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHH
Q 013779 299 DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF 378 (436)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 378 (436)
|+...|.+.+...+..+.++..... +..+.+... ...+.+.....|..++...+..| ++...+.+ ......
T Consensus 298 ~~~~~k~Laf~a~~~ill~~~~~l~------~g~v~~~~l-~~ig~F~simfPTIfslal~~l~-~~ts~~s~-~l~mai 368 (422)
T COG0738 298 RIKPEKYLAFYALIAILLLLAVALI------GGVVALYAL-FLIGLFNSIMFPTIFSLALKNLG-EHTSVGSG-LLVMAI 368 (422)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHh------cChHHHHHH-HHHHHHhHHHHHHHHHHHHhccC-ccccccce-eeeehe
Confidence 9999988776655444444443332 223333333 33444455556677788888888 44444433 344567
Q ss_pred HHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHH
Q 013779 379 GSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV 412 (436)
Q Consensus 379 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 412 (436)
.|+++.|.+.|++.|..|....+.....+|.+..
T Consensus 369 vGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 369 VGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred ecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 8889999999999999997776664555544443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=229.99 Aligned_cols=337 Identities=15% Similarity=0.106 Sum_probs=233.3
Q ss_pred ccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhH-HHHHHHHHHHHHHHHhccchh------H
Q 013779 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGRKR-ELIIAAVLYALGALTTAYAPG------L 73 (436)
Q Consensus 5 ~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~ 73 (436)
..+.+.++ +|+|+.++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++...++ .
T Consensus 22 l~~~~~~~--~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 22 LLFFYTDV--LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHc--cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 34555556 89999999999999999999999999999997 78755 677788888888887776653 4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhhhcC-cccchhhHHHHHHHHHHHHHHHHHHHhhcccc------ccccchHHHhhh
Q 013779 74 GVLLVGRLLYGLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQIN------AVGGWRYMYGLS 146 (436)
Q Consensus 74 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~------~~~~w~~~f~~~ 146 (436)
..+++.+++.+++.+...+...++..|.. +++||++..++.+.+..+|..+++.+.+.+.. ...+||+.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~ 179 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL 179 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 57778888999998888888888888887 46899999999999999988877766554432 122899999999
Q ss_pred hHHHHHHHHHH-hcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhcccccccccc
Q 013779 147 APLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS 225 (436)
Q Consensus 147 ~~~~~~~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (436)
++++++..+.. +..+|+++. .++ +++++.+.++.
T Consensus 180 ~~l~~~~~~~~~~~~~e~~~~----------------------------~~~-----------------~~~~~~~~~~~ 214 (437)
T TIGR00792 180 ALIGVVSLIICFFGTKERYSE----------------------------IPK-----------------NIEKKLSLKQI 214 (437)
T ss_pred HHHHHHHHHHHHcCCEecCCC----------------------------CCc-----------------ccccCCCHHHH
Confidence 88887776554 455553210 000 00000011224
Q ss_pred chhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccE
Q 013779 226 FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 305 (436)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 305 (436)
+++++++|.++...+...+....... ...+.+.+.+....+. ...+.......++.+++.++.+++.||+++|+.
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~ 289 (437)
T TIGR00792 215 FKALFKNDQLLILCLAYLFYNLAFNI----KNGVQVYYFTYVLGDP-ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKIL 289 (437)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHH----HcchhheeEeeecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 56678888877666555444443322 2223333343322222 456667777789999999999999999999998
Q ss_pred eehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCC-------ccccchhhHHHHHHHH
Q 013779 306 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNF 378 (436)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~ 378 (436)
+..+..+.+++...+... .++.+... ......+.......+..+++.+|..| ++.+|.+.|+.+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 364 (437)
T TIGR00792 290 FAGGILLMVLGYLIFFFA----GSNLPLIL-VLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRK 364 (437)
T ss_pred HHHHHHHHHHHHHHHHHc----chhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHH
Confidence 888777666665554331 11222222 22223333333334556677777654 4567999999999999
Q ss_pred HHHHHHHHhhHHHHHHhCcc
Q 013779 379 GSNAIVTFAFSPLKELLGAE 398 (436)
Q Consensus 379 ~g~~~~~~~~~~~~~~~g~~ 398 (436)
+|..+++.+.|.+.+..|+.
T Consensus 365 ~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 365 LGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999988764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=233.47 Aligned_cols=396 Identities=17% Similarity=0.153 Sum_probs=280.9
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHH-HHH
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVG-RLL 82 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l 82 (436)
...++++++ |+-+.++++|+.++......+..++.+.+.||+|.|++.+.|.++.+++.++.++++++|.+++. -++
T Consensus 67 v~~~~~~~~--f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi 144 (509)
T KOG2504|consen 67 LLFEELMDY--FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVI 144 (509)
T ss_pred hhHHHHHHH--hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345667777 99999999999999999999999999999999999999999999999999999999999877765 588
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCC
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 162 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e 162 (436)
.|+|.|..+......+..|| +|+|+.+.|+...+.++|.++-|.+...+.+.. |||+.+++.+.+.+-..+....+.|
T Consensus 145 ~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~-G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 145 GGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY-GWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999888 588999999999999999999999999999998 9999999988888766665554433
Q ss_pred -ChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhh----hHHHHHHhhhhcccc-ccccccc---hhhccCC
Q 013779 163 -SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSER----QIEDTLVSLKSSYTD-EKSEGSF---LEVFQGP 233 (436)
Q Consensus 163 -s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~ 233 (436)
+++....+..+.+ +..++.+......+........... .......+.+++.+. ..+.... .++++++
T Consensus 223 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~ 298 (509)
T KOG2504|consen 223 LSPPKKPNEEKDLR----NSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDP 298 (509)
T ss_pred CCcCCCchhhhhhc----cccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCc
Confidence 3221000000000 0000000000000000000000000 000000111111110 1111222 5788888
Q ss_pred chhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHH
Q 013779 234 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 313 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 313 (436)
.++.+.+...+..+. +.....++|.+.++.+.+. .+.+.+.+..++..++++++.|+++|+...++.......+.
T Consensus 299 ~fl~~~~~~~~~~~g----~~~p~~~l~~~~~~~g~~~-~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll 373 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLG----FNVPFVYLPSYAKSLGLSS-NDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLL 373 (509)
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcCCCh-hhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHH
Confidence 777666555444443 4457788899999988887 88999999999999999999999999988555444433333
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH
Q 013779 314 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 393 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 393 (436)
..+...+... .......+...+++.+.....+..+....+.|+.+.++-..+.|+...+..++..+||++.|.+.|
T Consensus 374 ~~gl~~~~~p----~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d 449 (509)
T KOG2504|consen 374 IAGLARLFLP----FATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYD 449 (509)
T ss_pred HHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeee
Confidence 3333322221 123445555555555665556666665688899999999999999999999999999999999999
Q ss_pred HhC-cchhHHHHHHHHHHHHhhee
Q 013779 394 LLG-AENIFLLFAAIAFLAVLFIV 416 (436)
Q Consensus 394 ~~g-~~~~~~~~~~~~~~~~~~~~ 416 (436)
..| |...|...+.+.++++.+..
T Consensus 450 ~tg~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 450 ITGNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred ccCCeeeehhhcChHHHHHHHHHH
Confidence 998 88889988888888775443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-28 Score=225.24 Aligned_cols=345 Identities=21% Similarity=0.202 Sum_probs=256.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----APGLGVLLVGRLLYGLGIGL 89 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~ 89 (436)
..-|+...+++.++..+...+.++++|.++||++|||+++.+.++.++..+..++ ..+.+.+++.-++.|++.+.
T Consensus 40 lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~ 119 (524)
T PF05977_consen 40 LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAF 119 (524)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999998887766554443 24788999999999999999
Q ss_pred hhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCChHHHHH
Q 013779 90 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL 169 (436)
Q Consensus 90 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~ 169 (436)
..|+..+++.|..|+++..++.++.+...++..++||.++|.++... |-.+.|.+.++..++........++.++
T Consensus 120 ~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~-G~~~~f~inalsfl~~i~~l~~~~~~~~---- 194 (524)
T PF05977_consen 120 FNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF-GAAAAFLINALSFLISILALLRWKPPPP---- 194 (524)
T ss_pred HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcccccc----
Confidence 99999999999999999999999999999999999999999988877 8888998887766665444443332111
Q ss_pred HhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHHHH
Q 013779 170 RAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQ 249 (436)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (436)
.++.+.+ .-.+.-+..++.+.++|..+..++...+..+..
T Consensus 195 ----------------------------~~~~~~e------------~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~ 234 (524)
T PF05977_consen 195 ----------------------------PSSLPRE------------RFFSALREGLRYVRSSPPLRSVLLRSFLFNLFA 234 (524)
T ss_pred ----------------------------ccccchh------------hhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 0000000 000111223455556666665544333333222
Q ss_pred HhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHc
Q 013779 250 ITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG 328 (436)
Q Consensus 250 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (436)
..+...+|.+.++ .+.++ ...|++.+..+++.++|.++.+++.+|+++++.+..+.+..+++.+.+...
T Consensus 235 ----~a~~aLlPl~a~~~l~~~a-~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~----- 304 (524)
T PF05977_consen 235 ----SAVWALLPLFARDVLGGGA-SGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS----- 304 (524)
T ss_pred ----hHHHHhhhHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-----
Confidence 1233456777765 45544 788999999999999999999999999999888887777777766665542
Q ss_pred CCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHH
Q 013779 329 GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIA 408 (436)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 408 (436)
.+.+.... .++..|...........+..++..|++.||+++++.++....+..+|..+.|.+.+..|....+.+.++..
T Consensus 305 ~~~~~~~~-~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~l 383 (524)
T PF05977_consen 305 PSFWLALI-ALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAAL 383 (524)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 22333333 33333444444444555888999999999999999999999999999999999999999888887777666
Q ss_pred HHHHhhe
Q 013779 409 FLAVLFI 415 (436)
Q Consensus 409 ~~~~~~~ 415 (436)
+++.++.
T Consensus 384 ll~~~~~ 390 (524)
T PF05977_consen 384 LLSALIA 390 (524)
T ss_pred HHHHHHH
Confidence 5555543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-27 Score=197.75 Aligned_cols=347 Identities=22% Similarity=0.215 Sum_probs=268.3
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
++|+++++.+| +|+|.+..|++.++..+...+.+++..+++.|+|.+|.+..++++.+++.++-... +.+.++.+-.
T Consensus 31 vgPLL~~Ir~~--~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~ 107 (395)
T COG2807 31 VGPLLDEIRQD--LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTL 107 (395)
T ss_pred hhhhHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 57899999998 99999999999999999999999999999999999999999999999999999887 8889999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 161 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 161 (436)
+.|.+.+......+.++-+.|| |+-+..++++....++|..+++.+...+.++..+||....+-+.++++.++.++.-
T Consensus 108 l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq- 185 (395)
T COG2807 108 LAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ- 185 (395)
T ss_pred HHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh-
Confidence 9999999999999999999996 67899999999999999999999998888776679999999999999887776532
Q ss_pred CChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHH
Q 013779 162 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 241 (436)
Q Consensus 162 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (436)
..|. +....+.+..+...++|+|.-|...+.
T Consensus 186 -~~r~------------------------------------------------~~~~~~~~~~~~~~vw~~~~aW~vtLf 216 (395)
T COG2807 186 -ALRE------------------------------------------------QAASIATKLVSVRKVWRSPLAWQVTLF 216 (395)
T ss_pred -cccc------------------------------------------------cccccccccccccccccCchhHHHHHH
Confidence 1110 000122222334568899988888765
Q ss_pred HHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCccEeehhhHHHHHHHHHH
Q 013779 242 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLL 320 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~ 320 (436)
+.+..+.+ +....|+|.++.+.|.+. ++++.+.+...+..++.++..+.+.+|. ++|+.......++.++.+.+
T Consensus 217 mGlqS~~~----Y~~~~WLP~ili~~G~sa-~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~ 291 (395)
T COG2807 217 MGLQSLLY----YIVIGWLPAILIDRGLSA-AEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGL 291 (395)
T ss_pred HHhhHHHH----HHHHHHHHHHHHHcCCCH-HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 55555544 458889999999999998 8999999999999999999999999975 44555555555555555555
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccc-cCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC-cc
Q 013779 321 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSE-IFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AE 398 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~ 398 (436)
.+.. .+..+.. .+ ..+....+..|+....+.+ ...++..+.-.|+.+.++++-.+.||.++|.+.|..| |.
T Consensus 292 ~~~P---~~~~~lw---~~-llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~ 364 (395)
T COG2807 292 LLAP---GQLPILW---AL-LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWS 364 (395)
T ss_pred HHhh---hhHHHHH---HH-HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChH
Confidence 4321 1222222 12 2222223333444444444 3345667788899999999999999999999999988 55
Q ss_pred hhHHHHHHHHHHHHhh
Q 013779 399 NIFLLFAAIAFLAVLF 414 (436)
Q Consensus 399 ~~~~~~~~~~~~~~~~ 414 (436)
..+.......++..+.
T Consensus 365 ~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 365 APLVLLALATLLMLIF 380 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555544443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=250.31 Aligned_cols=339 Identities=17% Similarity=0.062 Sum_probs=233.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHhhhhhhhhhhh
Q 013779 18 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---YAPGLGVLLVGRLLYGLGIGLAMHGA 94 (436)
Q Consensus 18 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~ 94 (436)
+....+++.+++.+++.++++++|+++||+|||++++++.++..+..++.. ..++++.++++|+++|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 345579999999999999999999999999999999998877665555443 45789999999999999999999999
Q ss_pred hhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccc--------cccchHHHhhhhHHH-HHHHHHHhcCCCChH
Q 013779 95 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA--------VGGWRYMYGLSAPLA-LLMGIGMWSLPPSPR 165 (436)
Q Consensus 95 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~--------~~~w~~~f~~~~~~~-~~~~~~~~~~~es~~ 165 (436)
.+++.|++|+++|++++++...+.++|.++|+++++++.+. ..+|++.+.+..+.. ++..+..+.+||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 99999999999999999999999999999999999998765 224555544443333 333444456777653
Q ss_pred HHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHH
Q 013779 166 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 245 (436)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (436)
.... .+ +..... ..+.....++.+++++.++...+...+.
T Consensus 205 ~~~~------------~~------------~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (1146)
T PRK08633 205 AAPE------------VF------------DKKKYL----------------FPKLLWRNLKLLRSDRVLWLAIIGLSYF 244 (1146)
T ss_pred CCcc------------cc------------cccccc----------------cHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1000 00 000000 0000112355667777777655544444
Q ss_pred HHHHHhChhhHHhchHHHHHh-cCCCcch-hhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHH
Q 013779 246 LFQQITGQPSVLYYAGPILQS-AGFSAAA-DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 323 (436)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (436)
.+... ....+.|.++++ .+.+. . ..+++.....++.+++.++.+++.||+++++.+.++.++.+++.+++...
T Consensus 245 ~~~~~----~~~~~~~~~~~~~~g~s~-~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1146)
T PRK08633 245 WFISQ----LAQANFPAYAKEVLGLDN-TFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA 319 (1146)
T ss_pred HHHHH----HHHHhhHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh
Confidence 43332 244455666654 56665 5 78888899999999999999999999999888777776666655554432
Q ss_pred HHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC--cchhH
Q 013779 324 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--AENIF 401 (436)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g--~~~~~ 401 (436)
.+.+..++..++. +.......+...+++.+..|++.||+++|+.+++.+++..+++.+.+.+.. .+ +...+
T Consensus 320 -----~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~ 392 (1146)
T PRK08633 320 -----PSLASVLVLFFLF-GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLF 392 (1146)
T ss_pred -----hhHHHHHHHHHHH-HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHH
Confidence 1222233333333 333333334455888899999999999999999999998887776655543 33 33344
Q ss_pred HHHHHHH
Q 013779 402 LLFAAIA 408 (436)
Q Consensus 402 ~~~~~~~ 408 (436)
++.+.+.
T Consensus 393 ~~~~~~~ 399 (1146)
T PRK08633 393 YLIALVT 399 (1146)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=212.92 Aligned_cols=355 Identities=15% Similarity=0.022 Sum_probs=237.1
Q ss_pred ccccCcccCccccccchhHHHHH--HHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHH-HHHHHHHhc---cchh-HH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLV--VSGSLYGALLGSILVY-SIADFLGRKRELIIAAVL-YALGALTTA---YAPG-LG 74 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~--~s~~~~~~~i~~~~~g-~l~dr~Grr~~l~~~~~~-~~~~~~~~~---~~~~-~~ 74 (436)
.|.+|.+.+| .|.|.+++|++ .+++.+...+.+++++ +..||+||||..++.+.+ .+.+....+ ...+ ..
T Consensus 21 ~p~lp~~l~~--~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (390)
T TIGR02718 21 MDALPTLLRE--DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAG 98 (390)
T ss_pred HHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHH
Confidence 4678888888 89999999997 4677888888888884 479999999987555432 221222222 2322 33
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHH
Q 013779 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 154 (436)
Q Consensus 75 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~ 154 (436)
.++...++.++..+...+...++..|..++++++...+....+..+|.++|+...+++.+.. |||..|++.++..++..
T Consensus 99 ~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~-gw~~~f~~~a~l~~~~~ 177 (390)
T TIGR02718 99 WAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF-GQRPAFLLVACVPLASL 177 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 44555666777788888888888899998888899999999999999999999888888877 99999999998887766
Q ss_pred HHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCc
Q 013779 155 IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 234 (436)
Q Consensus 155 ~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (436)
+..++++|+++ + + ++ +++++..+.++.+|+|.
T Consensus 178 ~~~~~~~~~~~-------------~---------------~---~~-----------------~~~~~~~~~~~~l~~~~ 209 (390)
T TIGR02718 178 VCVLWLKDRAV-------------A---------------S---PE-----------------APLARRASLFRFFRRPL 209 (390)
T ss_pred HHHHHcCCCCc-------------C---------------c---cc-----------------cchhhHHHHHHHHcCcC
Confidence 65555544321 0 0 00 00001123567788887
Q ss_pred hhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHH-HHHHHHHHHHHHHhhcCCccEeehhhHHH
Q 013779 235 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGV-FKLVMTWIAVAKVDDLGRRPLLIGGVCGI 313 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 313 (436)
.+......++...... ....+.+.++++.|.+. .+.+......+. ..+++.++.|++.||+++|+.+..+..+.
T Consensus 210 ~~~~~~~~~l~~~~~~----~~~~~~~~~l~~~G~s~-~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~ 284 (390)
T TIGR02718 210 AWSLLALALLSAMTAV----SGFGLSKLYLVDAGWPL-EWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA 284 (390)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhhHHHHhcCCCH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7665554444433332 24446677788888877 677777776654 66777899999999999999887666554
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHH-HhhcccccccchhccccCCc-cccchhhHHHHHHHHHHHHHHHHhhHHH
Q 013779 314 ALSLLLLSAYYKILGGFPLVAVSALLLYVG-CYQISFGPISWLMVSEIFPL-RTRGRGISLAVLTNFGSNAIVTFAFSPL 391 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 391 (436)
.+...................+.......+ ..+... +...+...+..++ +.+++.+++.+...++|..++|.+.|.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l 363 (390)
T TIGR02718 285 GSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYL 363 (390)
T ss_pred HHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222221110000111111122222211 122222 2333444455555 8899999999999999999999999999
Q ss_pred HHHhCcchhHHHHHHHHHHHHhh
Q 013779 392 KELLGAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 392 ~~~~g~~~~~~~~~~~~~~~~~~ 414 (436)
.|..|+...|...+++.+++..+
T Consensus 364 ~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 364 TDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHccHHHHHHHHHHHHHHHHH
Confidence 99999988888887777666543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=221.45 Aligned_cols=394 Identities=11% Similarity=0.067 Sum_probs=238.4
Q ss_pred CcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHhccchhHHH-HHHHHHHHh
Q 013779 7 PELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGV-LLVGRLLYG 84 (436)
Q Consensus 7 p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G 84 (436)
..+.++ +|.+.++.+++.+.+.....+..+++|+++|| +||||++.++.++++++++.++++++... ++++|+++|
T Consensus 39 ~yl~~~--lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ 116 (489)
T PRK10207 39 VFFVKQ--LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIA 116 (489)
T ss_pred HHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 344555 99999999999999999999999999999999 99999999999999999999999876444 558999999
Q ss_pred hhhhhhhhhhhhHhhhcCccc--chhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCC
Q 013779 85 LGIGLAMHGAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 162 (436)
Q Consensus 85 ~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e 162 (436)
+|.|...|...+++.|.+|++ +|++++++++.+.++|..+||.+++++.++. |||+.|++.++..++..+.....++
T Consensus 117 ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~~F~i~~i~~~~~~~~~~~~~~ 195 (489)
T PRK10207 117 VGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSVTYNLCGAGLIIALLVYFACRG 195 (489)
T ss_pred hccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHcch
Confidence 999999999999999999876 4577999999999999999999999999888 9999999965533333333333332
Q ss_pred ChHHHHHHhhcCcCccchHHHHHHH---------HHhhhhcCCCCCcchhhhHHH--HHHhhhhccccccccccchhhcc
Q 013779 163 SPRWLLLRAVQGKGSLQEYKEQAIS---------ALGKLRRRPPGDKLSERQIED--TLVSLKSSYTDEKSEGSFLEVFQ 231 (436)
Q Consensus 163 s~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 231 (436)
..+ .++.+.+....+....... ......+. .+........ ......--.++.+. .+.+|
T Consensus 196 ~~~---~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~f~~~~~~~----~~~~r 265 (489)
T PRK10207 196 MVK---DIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHN---VEVANLVLIVLSIVVTIIFFREAFKL----DKTGR 265 (489)
T ss_pred hhc---ccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcC----CHHHH
Confidence 111 0000000000000000000 00000000 0000000000 00000000000000 13444
Q ss_pred CCchhHHHHH--HHHHHHHHHhChhhHHhchHHHHHh-cCCC---cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccE
Q 013779 232 GPNLKAFIIG--GGLVLFQQITGQPSVLYYAGPILQS-AGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 305 (436)
Q Consensus 232 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 305 (436)
++.+....+. ..+.+.... ...+..+.+.++ ...+ -......+.....+..++..++.+++.||+++|+.
T Consensus 266 ~r~~~~~~l~~~~~~f~~~~~----q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~ 341 (489)
T PRK10207 266 NKMFVAFVLMLEAVVFYILYA----QMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGK 341 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4433322211 112222222 222333444442 2211 00133445555556677788888999999998874
Q ss_pred -------eehhhHHHHHHHHHHHHHHH-HH---cCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHH
Q 013779 306 -------LIGGVCGIALSLLLLSAYYK-IL---GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 374 (436)
Q Consensus 306 -------~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 374 (436)
+.+++.+.+++++.+..... .. ...+.+.++...++.+.......|...+++.+..|++.++.++|+.+
T Consensus 342 ~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~ 421 (489)
T PRK10207 342 DLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWF 421 (489)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHH
Confidence 55666666666544321111 11 11223334444455555566666776788889999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHH----------HhCcchhHHHHHHHHHHHHhheeE
Q 013779 375 LTNFGSNAIVTFAFSPLKE----------LLGAENIFLLFAAIAFLAVLFIVR 417 (436)
Q Consensus 375 ~~~~~g~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~ 417 (436)
...++|+.++..+...... ...+...|...++..+++.++.+.
T Consensus 422 l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 422 LTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred HHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887754421 111345666666666666554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=215.08 Aligned_cols=391 Identities=12% Similarity=0.043 Sum_probs=243.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 93 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 93 (436)
+|+|..+.|++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.+.+.|++.|++.|...|.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcCcccc---hhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCChHHHHHH
Q 013779 94 APLYIAETCPSQI---RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 170 (436)
Q Consensus 94 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~~ 170 (436)
..++++|++|+++ |++++++.+.+.++|.++||.+++++.+.. +||+.|++.++..++..+..++.++..+ +
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~~f~~~~~~~~~~~l~~~~~~~~~~----~ 197 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHVGFNLAAVGMVIGLLTFFAGRHMLR----D 197 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHcccccc----c
Confidence 9999999998754 888999999999999999999999988877 8999999987655554443333322110 0
Q ss_pred hhcCcCccchH-HHHHHHH----------HhhhhcCCCCCcchhhhHHH--HHHhhhhccccccccccchhhccCC--ch
Q 013779 171 AVQGKGSLQEY-KEQAISA----------LGKLRRRPPGDKLSERQIED--TLVSLKSSYTDEKSEGSFLEVFQGP--NL 235 (436)
Q Consensus 171 ~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 235 (436)
..+++...+++ .+..... ........+... .+.-... ............++ ...+.-|++ .+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 274 (475)
T TIGR00924 198 IGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVI-ANILLMTVTLAVIIFFFRLAFKP--RLDAVARNKMYAY 274 (475)
T ss_pred CCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHhHHHHH
Confidence 00000000000 0000000 000000000000 0000000 00000000000000 011111111 11
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCC---cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----cEe
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR-----PLL 306 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-----~~~ 306 (436)
..+.+...+.+..+ .......+.+.++ .+.+ .....+.+.+...+..++..++..++-.|..|| ...
T Consensus 275 l~l~~~~~~~~~~~----~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~ 350 (475)
T TIGR00924 275 IVLFLEAVVFWVLY----AQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPL 350 (475)
T ss_pred HHHHHHHHHHHHHH----HHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHH
Confidence 22222222222222 2223333433333 2211 112366777777777777776655443444332 222
Q ss_pred --ehhhHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHH
Q 013779 307 --IGGVCGIALSLLLLSAYYKILG---GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 381 (436)
Q Consensus 307 --~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 381 (436)
.++.++.++++..+.......+ ..+.+.++...++.+.......|...++..+..|++.||+++|+......+|.
T Consensus 351 k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~ 430 (475)
T TIGR00924 351 KFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGS 430 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655543211111 22444455555566666777778888999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhheeE
Q 013779 382 AIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR 417 (436)
Q Consensus 382 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 417 (436)
.+++.+.....+..++...|...++++++..++.++
T Consensus 431 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 431 LLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 999998887777767777777777777666665544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=212.25 Aligned_cols=360 Identities=14% Similarity=0.154 Sum_probs=233.6
Q ss_pred ccccCcccCccccccchhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQ-LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+.+.|.+.+| +|+|++| .|.+.+++..++++++++.|+++||+|.|+++.++++.+++.++++++++++..+.+.|+
T Consensus 46 s~a~p~L~~e--lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ 123 (511)
T TIGR00806 46 SFITPYLLTV--LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEV 123 (511)
T ss_pred HHHHHHHHHH--cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888887 9999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHh---hhhHHHHHHHHHHh
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYG---LSAPLALLMGIGMW 158 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~---~~~~~~~~~~~~~~ 158 (436)
+.|+++|... +...++..|+|++||+++.++..++..+|.+++++++++ +... |||+-+. +......+..++.+
T Consensus 124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~-gWr~y~~Ln~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTL-GWISYSTLNIISLVFMTFSVFLAL 200 (511)
T ss_pred HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-CchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999 4455 8987543 33333344455667
Q ss_pred cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHH
Q 013779 159 SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAF 238 (436)
Q Consensus 159 ~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (436)
++|..+|-+.-++.+.. + +. ...+.+..++++. .... +. .+......-..-...+++..+++.....
T Consensus 201 ~LP~~~~sl~f~~~~~~-----~-~~---~~~~~~~~~~~~~-~~~~-~~--~~~~~~~~~~~l~~~~~~~y~n~~vl~W 267 (511)
T TIGR00806 201 FLKRPKRSLFFNRLEDV-----R-GA---LPCELDQMVPGPG-GKLE-DY--LGTCRDSFLVRMLSELVTIYRNPQLLLW 267 (511)
T ss_pred hCCCCchhhhhcccccc-----c-cc---cccccccCCCCCc-cccc-hh--hhhhhhHHHHHHHHHHHHHhcCcchhhh
Confidence 88865553332210000 0 00 0000000000000 0000 00 0000000001112234455666655443
Q ss_pred HHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHH
Q 013779 239 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 318 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 318 (436)
.+ .+.....++.-+..|...+.++...+.+...|..-++..+.+.+..+..|++-.+..+..-+.++.....-+.+
T Consensus 268 Sl----Wwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gl 343 (511)
T TIGR00806 268 SL----WWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGL 343 (511)
T ss_pred hH----HHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHH
Confidence 32 22333334445667777777776543323566677777777888888888885544332233333332222222
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhh
Q 013779 319 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 388 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 388 (436)
++... ..++.+.......++...+..... +...-+++....+.-|..+|+++++.-+-..+-..+.
T Consensus 344 l~~m~---~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 344 VFWMS---QSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred hhhhh---cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 22211 124556666677777777766554 3335556666777789999998877666655544433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=196.88 Aligned_cols=340 Identities=19% Similarity=0.130 Sum_probs=211.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhh
Q 013779 16 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 95 (436)
Q Consensus 16 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 95 (436)
+.+....|.+.+.+++...+.++.+|.++||+|||+++.+|.+..++...+.+.+.|+..+.++|++.|+..| ......
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence 3466778999999999999999999999999999999999999999999999999999777788999999988 667888
Q ss_pred hHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccc-ccchHHHhh----hhHHHHH-HHHHHhcCCCChHHHHH
Q 013779 96 LYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-GGWRYMYGL----SAPLALL-MGIGMWSLPPSPRWLLL 169 (436)
Q Consensus 96 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~-~~w~~~f~~----~~~~~~~-~~~~~~~~~es~~~l~~ 169 (436)
++++|.+++|+|+++++......++|.++||.+|+++.... ..=+.+|.. ..+.... .....+++||+-+. +
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~--r 220 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPL--R 220 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccc--h
Confidence 99999999999999999999999999999999999988711 011222222 2222222 33445688998320 0
Q ss_pred HhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhH---HHHHHHHHH
Q 013779 170 RAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA---FIIGGGLVL 246 (436)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 246 (436)
|+. +.+....++ .+...+. .+..+..-....||+.... ..-.+.+..
T Consensus 221 k~~----~~~~~~~~~---------------------~~~~~~~-----~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~ 270 (451)
T KOG2615|consen 221 KRN----DEHSTLQEA---------------------ADDRLAL-----LKFARIFKVAALRNPPLLDFISVLRIFGLHY 270 (451)
T ss_pred hhc----ccccchhhh---------------------hhhhhhh-----cchhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence 000 000000000 0000000 0000000111223332221 111122222
Q ss_pred HHHHhChhhHHhchHHHH-HhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcC--CccEeehhhHHHHHHHHHHHHH
Q 013779 247 FQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG--RRPLLIGGVCGIALSLLLLSAY 323 (436)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~ 323 (436)
+.+...+....++.+.+. ...++++ .+.|.+.+..++.+.+......+..||.. .+..+...+.++.-..+++..
T Consensus 271 ~ly~~l~s~~~~t~~~l~~~rfg~ss-~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~- 348 (451)
T KOG2615|consen 271 FLYLELFSGLENTVLFLTHGRFGYSS-MQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL- 348 (451)
T ss_pred HHHHHHHHHHHhhHHHhhcCccCCCh-hhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc-
Confidence 222222223443433332 4467777 67777777777777666666555556544 222333333333322222221
Q ss_pred HHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHh
Q 013779 324 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 395 (436)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 395 (436)
...+........+.......... ....++....|+++||+.+|+....+.++-++||.+.|.+..+.
T Consensus 349 ----~~~~~~l~~~s~l~sf~~A~~vt-~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 349 ----ARTPVVLYLGSTLKSFSTASVVT-CLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred ----cccchhhhHHHHHHHHHHHHhhH-HHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 12233333334444433333333 34488889999999999999999999999999999998776543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=222.88 Aligned_cols=286 Identities=19% Similarity=0.227 Sum_probs=206.3
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch----------
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP---------- 71 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---------- 71 (436)
+..++|.++++ |+++..+.|++.+.+.++++++.++.|+++||+||||++.++.++++++++++++.+
T Consensus 52 ~~~~l~~iek~--F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~ 129 (633)
T TIGR00805 52 VNSSLTTIERR--FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYST 129 (633)
T ss_pred HHhhchhhhhh--hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence 45678999998 999999999999999999999999999999999999999999999999999987753
Q ss_pred -----------------------------------------hHHHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhH
Q 013779 72 -----------------------------------------GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL 110 (436)
Q Consensus 72 -----------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 110 (436)
.+..++++|+++|+|.+..++...+++.|++|+++|+++
T Consensus 130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~ 209 (633)
T TIGR00805 130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY 209 (633)
T ss_pred cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence 255788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccc---------------------cchHHHhhhhHHHHHHHHHHhcCCCChHHHHH
Q 013779 111 ISLKELFIVLGILLGYFVGSFQINAVG---------------------GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL 169 (436)
Q Consensus 111 ~~~~~~~~~~G~~l~~~l~~~l~~~~~---------------------~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~ 169 (436)
++++..+..+|..+|+++++++.+.+. +||..|++.+++.++..+.++++|++.+.
T Consensus 210 ~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~--- 286 (633)
T TIGR00805 210 IGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPK--- 286 (633)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC---
Confidence 999999999999999999998775321 37778998888888877666667664210
Q ss_pred HhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHHHH
Q 013779 170 RAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQ 249 (436)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (436)
+.. +.+.+..++. .....++..+ .+ .....++.....++++++|.++...+...+.....
T Consensus 287 -----~~~-~~~~~~~~~~--~~~~~~~~~~---~~---------~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~ 346 (633)
T TIGR00805 287 -----EGK-RVNVDVHETE--KLEKSEDKSR---KK---------NSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAF 346 (633)
T ss_pred -----ccc-ccchhhhhhh--cccccccccc---hh---------hhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 000 0000000000 0000000000 00 00000111234677899998877666555544443
Q ss_pred HhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHH-HHHHHHHHHHHHHhhcCC--ccEeehhhHHHHHHH
Q 013779 250 ITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGV-FKLVMTWIAVAKVDDLGR--RPLLIGGVCGIALSL 317 (436)
Q Consensus 250 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~ 317 (436)
..+..|.|.++++ .+.+. .+++.+.....+ +.+++.+++|+++||++. |+.+.++.....++.
T Consensus 347 ----~~~~~~lP~yl~~~~g~s~-~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 347 ----NGYITFLPKYLENQYGISS-AEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred ----HHHHHHHHHHHHHHcCCcH-HHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 3577788988876 56655 777777776665 568899999999999885 455555554444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=199.75 Aligned_cols=399 Identities=15% Similarity=0.101 Sum_probs=246.5
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc------hhHHHHH
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA------PGLGVLL 77 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~l~ 77 (436)
...|+++++ +|+|.+|++++.+.. .....++++.|+++||+|||+++.++.+++++++++++++ ++++.+.
T Consensus 48 v~s~~L~~~--lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~ 124 (591)
T PTZ00207 48 LISGAMQAR--YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS 124 (591)
T ss_pred HHHHHHHHH--hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 455778777 999999999999874 4556788899999999999999999999999999999987 6899999
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH
Q 013779 78 VGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 157 (436)
Q Consensus 78 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~ 157 (436)
+.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++.+.+...+.. . +|+..|++.+++.++..++.
T Consensus 125 l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~-~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 125 VYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D-NTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999996 789999999999999999764444443333 2 78888888888877765544
Q ss_pred h-c--CCCChHHHHHHhhcCcCccc-----------------h----------------------------HHHHHH-HH
Q 013779 158 W-S--LPPSPRWLLLRAVQGKGSLQ-----------------E----------------------------YKEQAI-SA 188 (436)
Q Consensus 158 ~-~--~~es~~~l~~~~~~~~~~~~-----------------~----------------------------~~~~~~-~~ 188 (436)
+ + .||.|+|...+++.++.+.+ . +..... ..
T Consensus 202 ~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~ 281 (591)
T PTZ00207 202 IVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAV 281 (591)
T ss_pred HhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3 3 45555543211100000000 0 000000 00
Q ss_pred --H-------------hhhhcCCCCCcchh---hhHHH--HHHhhhhc------c-ccccccccchhhccCCchhHHHHH
Q 013779 189 --L-------------GKLRRRPPGDKLSE---RQIED--TLVSLKSS------Y-TDEKSEGSFLEVFQGPNLKAFIIG 241 (436)
Q Consensus 189 --~-------------~~~~~~~~~~~~~~---~~~~~--~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~ 241 (436)
. +..+..+++++.+. +..+. +....+.+ + ...+...++++.+++..+|.+++.
T Consensus 282 v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~ 361 (591)
T PTZ00207 282 TVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWS 361 (591)
T ss_pred HHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHH
Confidence 0 00000000000000 00000 00000000 0 001112377788888888887765
Q ss_pred HHHHHHHHHhChhhHHhchHHHHHhc-CCCcchh-hHHHHHHHHHHHHHHHHHHHHHHhhcCCcc----Eee-hhhH---
Q 013779 242 GGLVLFQQITGQPSVLYYAGPILQSA-GFSAAAD-ATRVSVVIGVFKLVMTWIAVAKVDDLGRRP----LLI-GGVC--- 311 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~----~~~-~~~~--- 311 (436)
+++..... ..+...+.++.+.. |.....+ ...+.++.++++.+|++..|.+.....+|+ +-. ..+.
T Consensus 362 ~~cg~g~g----l~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~ 437 (591)
T PTZ00207 362 IFCCVGAH----FVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPS 437 (591)
T ss_pred HHHhhCch----heeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 54444433 34666777778887 6533232 233778888999999999998873322222 211 1111
Q ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHH-HHhhHH
Q 013779 312 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV-TFAFSP 390 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~-~~~~~~ 390 (436)
.+.++.+++... .......+...+.+.+++.. .++....++|+|. ++-|+-.-+.....-+|+.+. ..++|.
T Consensus 438 ~~~~~~lll~~~-----~p~~~L~~~~~lvg~~~G~~-~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~ 510 (591)
T PTZ00207 438 VCIITMLTLFLT-----LPKAALPLPYFIAAFANGFM-AATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGE 510 (591)
T ss_pred HHHHHHHHHHHH-----CCccHhHHHHHHHHHHhhHh-HHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence 122222222221 11123333344444444443 4455588999999 888888887777777777765 567787
Q ss_pred HHHHh----------C---cchhHHHHHHHHHHHHhheeEec
Q 013779 391 LKELL----------G---AENIFLLFAAIAFLAVLFIVRTV 419 (436)
Q Consensus 391 ~~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~ 419 (436)
++|.- | ++.+|++.+++++++.+......
T Consensus 511 ~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 511 WYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred HHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 77642 1 46688888888888877654443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=189.78 Aligned_cols=361 Identities=19% Similarity=0.177 Sum_probs=249.3
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-RKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
|.+|..-++ .|.|..|+|.+.+...+...++++++|.++||++ +||++.+..++.++........++++.+++..++
T Consensus 23 p~~~~~L~~--~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l 100 (400)
T PF03825_consen 23 PYLPLYLES--RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLL 100 (400)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344555555 7899999999999999999999999999999986 5778888888888877777788899999988888
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHH-hhcccccc--ccchHHHhhhhHHHHHHHHHHhc
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV-GSFQINAV--GGWRYMYGLSAPLALLMGIGMWS 159 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~l~~~~--~~w~~~f~~~~~~~~~~~~~~~~ 159 (436)
..+......|...++..+... ++++-.|-.-...++|.+++... +..+.... .+....+++.+..+++.....+.
T Consensus 101 ~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~ 178 (400)
T PF03825_consen 101 FSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF 178 (400)
T ss_pred HHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 888888888999998888775 33344556666677777766443 22222211 12334566666666555555566
Q ss_pred CCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHH
Q 013779 160 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFI 239 (436)
Q Consensus 160 ~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (436)
+|+.|+. + ..++..++....+..+++|+|++....
T Consensus 179 lp~~~~~-------------~--------------------------------~~~~~~~~~~~~~~~~llk~~~~~~Fl 213 (400)
T PF03825_consen 179 LPKTPPK-------------R--------------------------------SAKESVKKLLGLDALKLLKNPRFLVFL 213 (400)
T ss_pred CCCCccc-------------c--------------------------------ccCCCcccccchHHHHHhcCccHHHHH
Confidence 7776520 0 000001111222345789999888776
Q ss_pred HHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHH
Q 013779 240 IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 319 (436)
+..++...... ....|.+.++++.|..+....+...++..+.+++.-...+++.+|+|.++++.++....++-..+
T Consensus 214 l~~~l~~~~~~----~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l 289 (400)
T PF03825_consen 214 LAAFLIGISHA----AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLL 289 (400)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 65555554443 46667788899988433256777778888999999999999999999999999999998888877
Q ss_pred HHHHHHHHcCCchHHHHHHH----HHHHHhhcccccccchhccccCCccccchhhHHHHHH-HHHHHHHHHHhhHHHHHH
Q 013779 320 LSAYYKILGGFPLVAVSALL----LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKEL 394 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~ 394 (436)
+.... ++.+....... +-+..++... .....++.+..|++.|+++.++.+.. ..+|..+|..+.|++.|.
T Consensus 290 ~a~~~----~~~~~~~~~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~ 364 (400)
T PF03825_consen 290 YAYFS----DPWPFIVALQLLGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA 364 (400)
T ss_pred HHHhc----CCcHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 76531 22222222222 1233333333 34448899999999999999998876 678999999999999999
Q ss_pred hCcchh------HHHHHHHHHHHHhheeEecccC
Q 013779 395 LGAENI------FLLFAAIAFLAVLFIVRTVPET 422 (436)
Q Consensus 395 ~g~~~~------~~~~~~~~~~~~~~~~~~~~~~ 422 (436)
.|.+.. +.+.+++.++..++.+++.||+
T Consensus 365 ~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 365 FGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 886543 4444454445444444444544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=200.96 Aligned_cols=333 Identities=14% Similarity=0.046 Sum_probs=218.0
Q ss_pred CcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhh-HHHHHHHHHHHHHHHHhccchh------HHH
Q 013779 7 PELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGRK-RELIIAAVLYALGALTTAYAPG------LGV 75 (436)
Q Consensus 7 p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~ 75 (436)
+.+.++ +|+|..++|.+.++..+..++..|+.|+++|| +||| +.++.+.+..+++..+....++ +..
T Consensus 34 ~~~t~~--~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 34 YFYTDV--FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHHh--cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 344445 89999999999999999999999999999998 7875 5566777777777765544432 456
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHhhhcC-cccchhhHHHHHHHHHHHHHHHHHHHhhccccc------cccchHHHhhhhH
Q 013779 76 LLVGRLLYGLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQINA------VGGWRYMYGLSAP 148 (436)
Q Consensus 76 l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~------~~~w~~~f~~~~~ 148 (436)
+++...+.+.+.........++..|+. +++||.+..++...+..+|..+++.+...+... ..+|+..+.+.++
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i 191 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 666677777777777778888999988 468899998998888888888877654333211 1278888888887
Q ss_pred HHHHHHHHHh-cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccch
Q 013779 149 LALLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 227 (436)
Q Consensus 149 ~~~~~~~~~~-~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (436)
++++..+..+ ..+|.++ ++ ++++.+...+.+
T Consensus 192 i~~v~~~~~~~~~~e~~~------------------------------~~------------------~~~~~~~~~~~~ 223 (444)
T PRK09669 192 LGVVLFFCCFFMTKERYT------------------------------PE------------------VDNSSSVWKDLK 223 (444)
T ss_pred HHHHHHHHHhCCeEEecC------------------------------CC------------------CcCCCCHHHHHH
Confidence 7776655443 3333210 00 000111223466
Q ss_pred hhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEee
Q 013779 228 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI 307 (436)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 307 (436)
+++||+.++.......+............ +++.+...... ...+.......+..+++.++.+++.||+++|+.+.
T Consensus 224 ~~~~n~~~~~l~~~~~~~~~~~~~~~~~~----~y~~~~~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~ 298 (444)
T PRK09669 224 LLLGNSQWRIMFIFNVVLLTAVVTRGGAT----LYYVNYVLLRP-DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFK 298 (444)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHhhhh----heeeeeecCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 77889888876655444433332211112 22222222222 34445555566778888899999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCC-------ccccchhhHHHHHHHHHH
Q 013779 308 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGS 380 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g 380 (436)
.+..+..+....+... . .++...+....+..+.......+..+++++|..+ ++..|..+|..+....+|
T Consensus 299 ~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg 374 (444)
T PRK09669 299 WTIVAFVILSALIFFI---P-PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLG 374 (444)
T ss_pred HHHHHHHHHHHHHHHh---C-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHH
Confidence 7765554433322221 1 2222222333333344444555677788888765 334567788999999999
Q ss_pred HHHHHHhhHHHHHHhCcc
Q 013779 381 NAIVTFAFSPLKELLGAE 398 (436)
Q Consensus 381 ~~~~~~~~~~~~~~~g~~ 398 (436)
..+++.+.|.+.+..|+.
T Consensus 375 ~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 375 LAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999988873
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=201.46 Aligned_cols=391 Identities=13% Similarity=0.096 Sum_probs=223.7
Q ss_pred cccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHhh
Q 013779 8 ELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGL 85 (436)
Q Consensus 8 ~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~ 85 (436)
.+.++ +|+|+.+.+++.+.+........+++|+++|| +|||+++..+.++.+++..++++++ +.+.+.+.|+++|+
T Consensus 47 yl~~~--lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gi 124 (500)
T PRK09584 47 YLVKQ--LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAV 124 (500)
T ss_pred HHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33455 89999999999988887777777899999999 5999999999999999999998874 56677889999999
Q ss_pred hhhhhhhhhhhHhhhcCcccc--hhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh----c
Q 013779 86 GIGLAMHGAPLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW----S 159 (436)
Q Consensus 86 ~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~----~ 159 (436)
+.|...+...+++.|++|+++ |..++++++.+.++|..+||.+++++.+.. |||+.|++.++..++..+... .
T Consensus 125 g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-g~~~~F~i~~i~~~i~~i~~~~~~~~ 203 (500)
T PRK09584 125 GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-GWSVAFALSVVGMLITVVNFAFCQRW 203 (500)
T ss_pred hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999998643 456889999999999999999999998877 999999998765444433222 2
Q ss_pred CCCChHHHHHHhhcCcCccchHHHHHHH--------HHhhhhcCCCCCcchhhhHHHH-HHhhhhccccccccccchhhc
Q 013779 160 LPPSPRWLLLRAVQGKGSLQEYKEQAIS--------ALGKLRRRPPGDKLSERQIEDT-LVSLKSSYTDEKSEGSFLEVF 230 (436)
Q Consensus 160 ~~es~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 230 (436)
++|.++ +.+.+..+..+.... ........++ +......... .......... . ....+.-
T Consensus 204 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~ 271 (500)
T PRK09584 204 VKQYGS-------KPDFEPINYRKLLLTIVGVVALIAIATWLLHNQ--EIARMALGVVALGIVVIFGKE-A--FAMKGAA 271 (500)
T ss_pred hccCCC-------CCCccccchhhHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHH-H--hhcCHHH
Confidence 222110 000000000000000 0000000000 0000000000 0000000000 0 0000011
Q ss_pred cCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cC---CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcC----C
Q 013779 231 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AG---FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG----R 302 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~----~ 302 (436)
|++ ...... .++.....+..+.-...+...+..+ .. ..-......+.+...+..++..++..++-+|.+ .
T Consensus 272 ~~~-~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~ 349 (500)
T PRK09584 272 RRK-MIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPM 349 (500)
T ss_pred HHH-HHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCc
Confidence 111 111111 1111111111111112222211111 10 111123556666777666666666644444444 4
Q ss_pred ccEeehhhHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHH
Q 013779 303 RPLLIGGVCGIALSLLLLSAYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG 379 (436)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 379 (436)
.+.+.+++.+.++++..+.......+. .+.+......+..+.......|...+++.+..|++.||+++|+......+
T Consensus 350 ~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~ 429 (500)
T PRK09584 350 PHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAG 429 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 455667777777777776554321111 11234445555556667777888889999999999999999988766667
Q ss_pred HHHHHHHhhHHHH----------HHhCcchhHHHHHHHHHHHHhhe
Q 013779 380 SNAIVTFAFSPLK----------ELLGAENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 380 g~~~~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~ 415 (436)
|..++..+.+... ...++...|...++..++.+++.
T Consensus 430 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~ 475 (500)
T PRK09584 430 AALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM 475 (500)
T ss_pred HHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7666666554221 11125566776776655444433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=186.02 Aligned_cols=374 Identities=15% Similarity=0.159 Sum_probs=242.9
Q ss_pred CcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHH-HHHHHHHHHHHhccchhHH-------
Q 013779 7 PELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKRELII-AAVLYALGALTTAYAPGLG------- 74 (436)
Q Consensus 7 p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~~~~~~------- 74 (436)
+.+.++ +|.++.+.+++..+..+...+.+++.|+++| |+||||.+++ +.....++..+++++++.+
T Consensus 28 ~~yl~~--lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~ 105 (477)
T TIGR01301 28 TPYVQE--LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNL 105 (477)
T ss_pred HHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccc
Confidence 334455 8999999999999999999999999999999 5999999877 4666667777777766643
Q ss_pred ----------HHHHHHHHHhhhhhhhhhhhhhHhhhcCcccch--hhHHHHHHHHHHHHHHHHHHHhhcc--cccc----
Q 013779 75 ----------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR--GTLISLKELFIVLGILLGYFVGSFQ--INAV---- 136 (436)
Q Consensus 75 ----------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~l~~~l~~~l--~~~~---- 136 (436)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++|+.+++.. .+..
T Consensus 106 ~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~ 185 (477)
T TIGR01301 106 DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTK 185 (477)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccc
Confidence 223333344557777888899999999998765 5799999999999999999998864 1110
Q ss_pred --------ccchHHHhhhhHHHHHHHHHH-hcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHH
Q 013779 137 --------GGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIE 207 (436)
Q Consensus 137 --------~~w~~~f~~~~~~~~~~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (436)
.+.|..|++.++..++..+.. +..+|.|... + ++.+++ +.++.
T Consensus 186 ~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~-------~---~~~~~~------~~~~~------------ 237 (477)
T TIGR01301 186 TEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG-------S---DDFINS------EAAPP------------ 237 (477)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc-------c---ccchhh------hcccc------------
Confidence 156889999888777765554 5677765200 0 000000 00000
Q ss_pred HHHHhhhhccccccccccchhhc----cC-CchhHHHHHHHHHHHHHHhChhhHHhchHHHHHh--cCCCcc-----hh-
Q 013779 208 DTLVSLKSSYTDEKSEGSFLEVF----QG-PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS--AGFSAA-----AD- 274 (436)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~- 274 (436)
++.+....+++++ +- +..+.+.+..++.++.++. +..|.+.++.+ ++.++. ++
T Consensus 238 ----------~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~----~~~y~T~~vg~~v~~~~~~~~~~y~~g 303 (477)
T TIGR01301 238 ----------SKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFP----FILFDTDWMGREVYGGSVNQGAKYDDG 303 (477)
T ss_pred ----------cccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH----HHHhccHHHHHHHcCCCCcchhHHHHH
Confidence 0000001112222 22 3455666655555555543 55555555543 222111 01
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhhcCC-ccEeehhhHHHHHHHHHHHHHHHHHcCC-c--------------hHHH
Q 013779 275 ---ATRVSVVIGVFKLVMTWIAVAKVDDLGR-RPLLIGGVCGIALSLLLLSAYYKILGGF-P--------------LVAV 335 (436)
Q Consensus 275 ---~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~ 335 (436)
..+......+...+.+++..++.+|+|+ |+....+.++.++++....+.....++. . ....
T Consensus 304 vr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (477)
T TIGR01301 304 VRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASA 383 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHH
Confidence 2344455556666777888899999985 5666777777777766665433211100 0 1333
Q ss_pred HHHHHHHHHhhcccccccchhccccCCc--cccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC--cchhHHHHHHHHHHH
Q 013779 336 SALLLYVGCYQISFGPISWLMVSEIFPL--RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--AENIFLLFAAIAFLA 411 (436)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~ 411 (436)
...+...|........++++++++..|+ +..|..+|+.|.+..+...+.....|.+.+..| ....+.+.++..+++
T Consensus 384 l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~a 463 (477)
T TIGR01301 384 LIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVS 463 (477)
T ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHH
Confidence 3333444444445556888999999885 455999999999999999999988888777776 445677777888888
Q ss_pred HhheeEecccCCC
Q 013779 412 VLFIVRTVPETKG 424 (436)
Q Consensus 412 ~~~~~~~~~~~~~ 424 (436)
+++..+.+|+.+.
T Consensus 464 a~~~~~~~~~~~~ 476 (477)
T TIGR01301 464 GLLALILLPRPRV 476 (477)
T ss_pred HHHHHHhCCCCCC
Confidence 8877777777653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-22 Score=183.33 Aligned_cols=368 Identities=15% Similarity=0.136 Sum_probs=226.0
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 83 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 83 (436)
.++|.+.+| +|- .....|+.+.+.++.++..++.|.++|.||||..++.+.++..+|++.++-++|...++++..+.
T Consensus 65 ~~l~~I~~d--iG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~ 141 (599)
T PF06609_consen 65 SILPYINAD--IGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY 141 (599)
T ss_pred HHHHHHHHh--cCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence 455677777 775 47788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH--hcCC
Q 013779 84 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM--WSLP 161 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~--~~~~ 161 (436)
|+|.|.... ....++|..|.|.|.....+.....-.....++.++..+.... +|||.|++.++...+.++.. ++.|
T Consensus 142 GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~-~WRw~~~~~~i~~~i~~vl~~~fY~P 219 (599)
T PF06609_consen 142 GVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS-GWRWIFYIFIIWSGIALVLIFFFYFP 219 (599)
T ss_pred HHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC-CcchHHHHHHHHHHHHHHHHHHHhCC
Confidence 999876654 5556899999999988877776665555566777777665555 99999999888776655443 2344
Q ss_pred CChHHHHHHhhcCcCccchHHHHHHHHHhhh------------------hcCCCCCcchhhhHHHHHHh--------hhh
Q 013779 162 PSPRWLLLRAVQGKGSLQEYKEQAISALGKL------------------RRRPPGDKLSERQIEDTLVS--------LKS 215 (436)
Q Consensus 162 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~--------~~~ 215 (436)
++.+ .. +++...+.+ ..+.++.+ ......++.+..-....... .-+
T Consensus 220 P~~~--~~-----~~~~~s~~~-~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE 291 (599)
T PF06609_consen 220 PPRA--QL-----HGRKLSKRE-QLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWE 291 (599)
T ss_pred Cchh--hh-----ccccCcHHH-HHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhh
Confidence 3321 11 000011111 11111111 11111223322221111100 001
Q ss_pred ccccccccccchhhccCCchh-HHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcc--hhhHHHHHHHHHHHHHHHH
Q 013779 216 SYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAA--ADATRVSVVIGVFKLVMTW 291 (436)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~ 291 (436)
.....+++.-..+++|+++.. ..++..++.... +.....+.|..... ++.+.. ...++.....+.+..++.+
T Consensus 292 ~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~----~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~ 367 (599)
T PF06609_consen 292 WFGAPKDPLFPHRLFKDRRGFAALLVISFISGMN----FFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAV 367 (599)
T ss_pred hhccCCCCcCCHHHhccchHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHH
Confidence 011112233345677775322 222222222211 22333344444333 333221 2467777888888889999
Q ss_pred HHHHHHhhcCCccEe-ehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhh
Q 013779 292 IAVAKVDDLGRRPLL-IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 370 (436)
Q Consensus 292 ~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 370 (436)
+.+.+..+.+|-|.. +++..++.+++..+... ..++....+....+...+.+.... ......+-..|++.-|++.
T Consensus 368 i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~---~~~n~~~~i~~~~l~g~giG~~~~-~~~~~~ql~~p~~~ig~a~ 443 (599)
T PF06609_consen 368 ILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV---RPDNKNAAIAFLVLAGFGIGGILV-PAIVIAQLIVPDEDIGTAT 443 (599)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc---cCCCcchHHHHHHHHHHhHHHHHH-HHHHeeEeeeCchHHHHHH
Confidence 999999888876654 34444444433333322 112222222223233223333333 3335666678999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 013779 371 SLAVLTNFGSNAIVTFAFSPLK 392 (436)
Q Consensus 371 g~~~~~~~~g~~~~~~~~~~~~ 392 (436)
|+..+++.+|+.++..++..+.
T Consensus 444 gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 444 GLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999998886654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-23 Score=192.67 Aligned_cols=367 Identities=14% Similarity=0.006 Sum_probs=239.0
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHH-HHHHHHhccchhHHH-H
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-----RKRELIIAAVLY-ALGALTTAYAPGLGV-L 76 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~-~~~~~~~~~~~~~~~-l 76 (436)
.+.|.+.++ +|+|.++++...++..+...+-.+ +|.++||++ ||+.++++.++. .++....+..++... .
T Consensus 47 ~~~~~l~~~--lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~ 123 (468)
T TIGR00788 47 PLSPMLTDD--LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVA 123 (468)
T ss_pred hhhHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 345566666 999999999999999999999666 999999998 777777777776 344444454455444 4
Q ss_pred HHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHH---HHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHH
Q 013779 77 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLI---SLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 153 (436)
Q Consensus 77 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~ 153 (436)
.+.+++.+++.+...++..++..|..+ +++.... ++.....++|.++|+.+++.+.+.. +||..|++.+...++.
T Consensus 124 ~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~-~~~~~f~~~a~l~ll~ 201 (468)
T TIGR00788 124 AAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT-LTRILFLITAALLLLQ 201 (468)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHH
Confidence 448899999999999999999999998 5554433 3333445589999999999988877 9999999988888777
Q ss_pred HHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCC
Q 013779 154 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 233 (436)
Q Consensus 154 ~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (436)
.+..++++|++... +. +..+++ . ... ........+ ..++...+.++.+++|
T Consensus 202 ~~~~~~~~E~~~~~-------~~--~~~~~~-~--------~~~-~~~~~~~~~----------~~~~~~~~l~~~l~~~ 252 (468)
T TIGR00788 202 LFVSNLSKERRAFV-------RP--RIGTYL-E--------MNM-ALLTLGVLA----------NVKVQILGLRGAIQLL 252 (468)
T ss_pred HHHHHhcccccccc-------cc--cccccc-h--------hhh-hhhhhhHHH----------HHHHHHHHHHHHHhcH
Confidence 66666777753100 00 000000 0 000 000000000 0001111244456667
Q ss_pred chhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHH
Q 013779 234 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 313 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 313 (436)
..+...+..++.+. ...+. ....+. ...+..|.++ ...+......+++.+++..+.+++.+|++.|+.+..+..+.
T Consensus 253 ~i~~~l~fifl~~~-~~~~~-~~~~f~-~~~~~lG~s~-~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~ 328 (468)
T TIGR00788 253 EIAKPLIFIFLSYA-NLPGA-SGSVFC-ATTQCLPGGP-SFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLY 328 (468)
T ss_pred HHHHHHHHHHHHHh-hcCCC-CceeEE-EEcccCCCCc-chhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 66654443333111 11111 111111 1123467776 88999999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhh
Q 013779 314 ALSLLLLSAYYKILG-----GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 388 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 388 (436)
+++...........+ .+.+.......+...+.+....+.. .++.+..|++.+|+.+++.+.+.++|..+++.+.
T Consensus 329 ~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~g 407 (468)
T TIGR00788 329 TLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFL-VLLARLCPSGCESSVFALLASILHLGSSVSGFLG 407 (468)
T ss_pred HHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHH-HHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 766544321100000 1122233333344444555555554 8889999999999999999999999999999999
Q ss_pred HHHHHHhC-----cchhHHHHHHHHH
Q 013779 389 SPLKELLG-----AENIFLLFAAIAF 409 (436)
Q Consensus 389 ~~~~~~~g-----~~~~~~~~~~~~~ 409 (436)
+.+.+..| ++..+....+..+
T Consensus 408 g~l~~~~g~~~~~~~~~~~~i~i~~~ 433 (468)
T TIGR00788 408 VLLMETIGITCDNSNNLWLLILGHSL 433 (468)
T ss_pred HHHHHHcCCCcccccchHHHHHHHHH
Confidence 99999988 6666655444433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=189.77 Aligned_cols=334 Identities=14% Similarity=0.034 Sum_probs=214.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhh-hHHHHHHHHHHHHHHHHhccch------hHHHHHHHHHHH
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGR-KRELIIAAVLYALGALTTAYAP------GLGVLLVGRLLY 83 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~ 83 (436)
+|+++.++|.+..+..+..++..|+.|.++| |+|| |+.++++.+..+++..++...+ .+..+++...+.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999 6799 5567778888888766664433 134566667777
Q ss_pred hhhhhhhhhhhhhHhhhcC-cccchhhHHHHHHHHHHHHHHHHHHHhhcccc------ccccchHHHhhhhHHHHHHHHH
Q 013779 84 GLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQIN------AVGGWRYMYGLSAPLALLMGIG 156 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~------~~~~w~~~f~~~~~~~~~~~~~ 156 (436)
+++.....+...++..|.. +++||.+..++...+.++|..+.+.+...+.. ...+|+....+.+++.++..+.
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999998 58999999999777777776666554433211 1115777777776666655444
Q ss_pred Hh-cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCch
Q 013779 157 MW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 235 (436)
Q Consensus 157 ~~-~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (436)
.+ ..+|.++. +..+ .+++++.+.+..++.+++|+.+
T Consensus 197 ~~~~~~e~~~~------------------------------~~~~-------------~~~~~~~~~~~~~~~~~~n~~~ 233 (473)
T PRK10429 197 TLRNVHEVYSS------------------------------DNQV-------------SAEGSHLTLKDIVALIYKNDQL 233 (473)
T ss_pred HHcCceecCCc------------------------------cccc-------------cccccCCCHHHHHHHHhcCHHH
Confidence 33 35553210 0000 0000011112234456677776
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHH
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 315 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 315 (436)
+..+....+...... ....+.+++.+....+. ...+.......+..+++.++.+++.||+|+|+.+..+..+..+
T Consensus 234 ~~ll~~~~~~~~~~~----~~~~~~~y~~~y~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 234 SCLLGMALAYNIASN----IINGFAIYYFTYVIGDA-DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHH----HHhhheeeEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 666554444443332 22233333444433333 4556666666788899999999999999999998777766555
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCC-------ccccchhhHHHHHHHHHHHHHHHHhh
Q 013779 316 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF 388 (436)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~ 388 (436)
+.+.+.........+.+..+... +..+.......+..+++.+|..+ .+..|..+|..+....++..+++.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~i~~-~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~ 387 (473)
T PRK10429 309 SCGVLLLMGLAAPHNALLIVIAG-ILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFI 387 (473)
T ss_pred HHHHHHHHhccCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44443321111112222222222 22333333344555678888755 34456688999999999999999999
Q ss_pred HHHHHHhCc
Q 013779 389 SPLKELLGA 397 (436)
Q Consensus 389 ~~~~~~~g~ 397 (436)
|.+.+..|+
T Consensus 388 g~~l~~~Gy 396 (473)
T PRK10429 388 GVVLGLIGY 396 (473)
T ss_pred HHHHHHcCC
Confidence 999988876
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=179.59 Aligned_cols=387 Identities=13% Similarity=0.057 Sum_probs=219.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHhhhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMH 92 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~ 92 (436)
+|+++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++.+++.++++..+ +...+.+...+.+++.|...+
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~ 119 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS 119 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence 899999999999999999999999999999999 999999999999999987776543 223344444555566777778
Q ss_pred hhhhHhhhcCccc--chhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCChHHHHHH
Q 013779 93 GAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 170 (436)
Q Consensus 93 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~~ 170 (436)
...++++|.+|++ +|..++++.+.+.++|..++|.+.+++.+.. |||+.|.+.++..++..+..+...+. +...
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F~iaaigm~l~li~~~~~~~~---l~~~ 195 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGFGLAAVGMIAGLVIFLCGNRH---FTHT 195 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHhhhh---hccC
Confidence 8888999999875 6899999999999999999999999988877 99999998766444433333221110 0000
Q ss_pred hhcCcCccchHHHHHHH------HHh----hhhcCCCCCcchhhhHHH-HHHhhh-hccccccccccchhhccCC--chh
Q 013779 171 AVQGKGSLQEYKEQAIS------ALG----KLRRRPPGDKLSERQIED-TLVSLK-SSYTDEKSEGSFLEVFQGP--NLK 236 (436)
Q Consensus 171 ~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~ 236 (436)
...++...+++ +.... ... ......-.+......... ...... --.....+ .+-.+ |++ ...
T Consensus 196 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e--r~r~~~~~ 271 (493)
T PRK15462 196 RGVNKKVLRAT-NFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKA-ENQKQ--RKELGLIV 271 (493)
T ss_pred CCCCCCCchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHH--HhhHHHHH
Confidence 00000000000 00000 000 000000000000000000 000000 00000000 00000 111 011
Q ss_pred HHHHHHHHHHHHHHhChhhHHhchHHHHHh--cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC--cc-----Eee
Q 013779 237 AFIIGGGLVLFQQITGQPSVLYYAGPILQS--AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR--RP-----LLI 307 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~-----~~~ 307 (436)
.+.+...+.+..+......+..|.....+. .|+. ....+..+...+..++.+++..++-.|..+ |. -..
T Consensus 272 ~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~--ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa 349 (493)
T PRK15462 272 TLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT--VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFA 349 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee--eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHH
Confidence 122222222222222222333333222211 1222 346777788888777777777666555532 21 144
Q ss_pred hhhHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHH-HHHHHH
Q 013779 308 GGVCGIALSLLLLSAYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN-FGSNAI 383 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~ 383 (436)
.++.+++++++.+.......++ .+..+++...++........+|+..+.++++.|++.+|..+|+..... .+|..+
T Consensus 350 ~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~ 429 (493)
T PRK15462 350 LGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYL 429 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777666543332221 234445555566677788899999999999999999999999986533 455555
Q ss_pred HHHhhHHHHHH------------hCcchhHHHHHHHHHHH
Q 013779 384 VTFAFSPLKEL------------LGAENIFLLFAAIAFLA 411 (436)
Q Consensus 384 ~~~~~~~~~~~------------~g~~~~~~~~~~~~~~~ 411 (436)
+..+.+...+. ..+...|...+...+++
T Consensus 430 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 430 AGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 55554433210 12334666666666555
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-23 Score=183.66 Aligned_cols=354 Identities=15% Similarity=0.135 Sum_probs=229.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HHH-HHhccc----hhH-HHHHHHHHHHhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA--LGA-LTTAYA----PGL-GVLLVGRLLYGLG 86 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~--~~~-~~~~~~----~~~-~~l~~~r~l~G~~ 86 (436)
.|+|.+|+|.+.++..+...+.+|+.|.++||.|.||-++....... .+. +...+. .|+ ...+++-...|+.
T Consensus 38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~ 117 (412)
T PF01306_consen 38 AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLV 117 (412)
T ss_dssp H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999997776554433222 122 222222 232 2344444556666
Q ss_pred hhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcC-CCChH
Q 013779 87 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-PPSPR 165 (436)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~-~es~~ 165 (436)
.....|+..+++.++. ++.+.=.|-.-.+.++|.+++..++|.+.+. +-+..|++....+++..++.+.. |+.++
T Consensus 118 f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~~~~~~~~ 193 (412)
T PF01306_consen 118 FNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLLLKPDVPP 193 (412)
T ss_dssp TTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSS---SSS
T ss_pred HcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHHcCCcCch
Confidence 6667777777776654 3445566777788999999999999988764 55778888776666655554443 33221
Q ss_pred HHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHH
Q 013779 166 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 245 (436)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (436)
.. + ..+ .++.++++.+.+...+++|+|++|.+.+.....
T Consensus 194 ~~----------------------------~-~~~------------~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~ 232 (412)
T PF01306_consen 194 QA----------------------------E-VAD------------ALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGV 232 (412)
T ss_dssp SS------------------------------SST------------TSSS------HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hh----------------------------h-hhc------------ccccCCCCCcHHHHHHHhcchhHHHHHHHHHHH
Confidence 00 0 000 000000111122356788999888766544443
Q ss_pred HHHHHhChhhHHhchHHHHHhc----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHH
Q 013779 246 LFQQITGQPSVLYYAGPILQSA----GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 321 (436)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 321 (436)
...+. ......+.+.... +.++ ...|.+.+..-+..++.-.+.+++.+|+|.|+.++++..++.+-.....
T Consensus 233 ~~~Y~----vfdqqf~~y~~~~f~~~~~g~-~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~ 307 (412)
T PF01306_consen 233 AAIYD----VFDQQFPIYFASFFQSAGQGN-QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG 307 (412)
T ss_dssp HHHHH----HHHHHHHHHHHHTSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHhcccccCh-hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh
Confidence 33332 2322234444432 2233 4578888888899999999999999999999999999999888877776
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHH-HHHHHHHHHHHHHhhHHHHHHhCcchh
Q 013779 322 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKELLGAENI 400 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~g~~~~ 400 (436)
.. ++++.....-.+-..-+.....+. .-++++.+|++..++...+. +...+++..+.+.+.|.+.|+.|++..
T Consensus 308 ~~-----~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~t 381 (412)
T PF01306_consen 308 FA-----TNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHT 381 (412)
T ss_dssp T-------SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh-----cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHH
Confidence 53 344444444444433333333333 48899999999999998885 566899999999999999999999999
Q ss_pred HHHHHHHHHHHHhheeEecccCCC
Q 013779 401 FLLFAAIAFLAVLFIVRTVPETKG 424 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~ 424 (436)
+++.+.+.+...++..+.++++++
T Consensus 382 ylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 382 YLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHHHHheeeecCCCc
Confidence 999998888777777666665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-22 Score=184.22 Aligned_cols=336 Identities=19% Similarity=0.207 Sum_probs=246.2
Q ss_pred cCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHH-HHHHHHHHHHHHHHhccc-h-------h
Q 013779 6 SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKRE-LIIAAVLYALGALTTAYA-P-------G 72 (436)
Q Consensus 6 ~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~-~-------~ 72 (436)
.+.+.+. +|+++...|.+..+..+..++..|+.|.++| |+||||. ++++.+..+++..++... + .
T Consensus 25 ~~f~~~~--~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 25 LYFYTDV--LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHH--cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 4445555 7999999999999999999999999999999 8998765 556888888888887765 4 2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhhhcCc-ccchhhHHHHHHHHHHHHHHHHHHHhhccccccc------cchHHHhh
Q 013779 73 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVG------GWRYMYGL 145 (436)
Q Consensus 73 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~------~w~~~f~~ 145 (436)
...+.+..++..++.........++..|..+ ++||.+..++...+..+|..+...+.+.+.+... +|++..++
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 3345777777799999999999999999997 5789999999999999999877777666553322 69999888
Q ss_pred hhHHHHHHHHHHh-cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccc
Q 013779 146 SAPLALLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEG 224 (436)
Q Consensus 146 ~~~~~~~~~~~~~-~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (436)
.+++.++..+... ..+|+++ +.++++++.+-++
T Consensus 183 ~~iv~~v~~~i~~~~~ke~~~----------------------------------------------~~~~~~~~~~~~~ 216 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKERSV----------------------------------------------EVTEQEKKISLRD 216 (428)
T ss_pred HHHHHHHHhhhhhheeeeccc----------------------------------------------ccccccccccccc
Confidence 8888877765554 4555111 0011112233445
Q ss_pred cchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 013779 225 SFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 304 (436)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 304 (436)
.+++++|||.++.......+..+.... .....+++.+..-.++ ...+.......+..+++.++.++++||+|+|+
T Consensus 217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~----~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~ 291 (428)
T PF13347_consen 217 SLRSLFRNRPFRILLLAFFLQWLAFAL----MNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK 291 (428)
T ss_pred chhhhcccchHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee
Confidence 678889999888877766666555543 3333444455433333 45667777888899999999999999999999
Q ss_pred EeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCc-------cccchhhHHHHHHH
Q 013779 305 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL-------RTRGRGISLAVLTN 377 (436)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~ 377 (436)
.+..+..+.+++.+.+..... .+.+..+ ......+..........+++.+|..+. +..|...|+.+...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~ 367 (428)
T PF13347_consen 292 VYIIGLLLAALGFLLLFFLGP---GSPWLVL-ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFI 367 (428)
T ss_pred ehhhhHHHHHHHHHHHHHHHh---hhHHHHH-HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhh
Confidence 999999888887777665421 2333333 344444444445556777888888763 44688899999999
Q ss_pred HHHHHHHHHhhHHHHHHhCcc
Q 013779 378 FGSNAIVTFAFSPLKELLGAE 398 (436)
Q Consensus 378 ~~g~~~~~~~~~~~~~~~g~~ 398 (436)
.++..+++.+.+.+.+..|+.
T Consensus 368 k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 368 KIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999998887754
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-19 Score=166.56 Aligned_cols=352 Identities=16% Similarity=0.150 Sum_probs=240.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHhccc--hhHHHHHHHHHHHhhhhhhhhhhhhh
Q 013779 20 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII-AAVLYALGALTTAYA--PGLGVLLVGRLLYGLGIGLAMHGAPL 96 (436)
Q Consensus 20 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~ 96 (436)
+..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++.++.+. .+++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999998776554 555555666666653 34555556666667778888889999
Q ss_pred HhhhcCcccch--------------------------hhHHHHHHHHHHHHHHHHHHHhhccccccc-------cchHHH
Q 013779 97 YIAETCPSQIR--------------------------GTLISLKELFIVLGILLGYFVGSFQINAVG-------GWRYMY 143 (436)
Q Consensus 97 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-------~w~~~f 143 (436)
++.|..+++++ ++..+.-.....+|.++.-.+.-.+..... +-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999998888 899999888888998887776655432221 358888
Q ss_pred hhhhHHHHHHHHH-HhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccc
Q 013779 144 GLSAPLALLMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKS 222 (436)
Q Consensus 144 ~~~~~~~~~~~~~-~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (436)
.+.++.-++..+. .+++||.|+- +. .+...+..... -++-
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~--------~~-~~~~~~~~~~g------------------------------~~~l 270 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGP--------RP-LPSGSSYLRFG------------------------------FKRL 270 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCC--------CC-CCcchhHHHHH------------------------------HHHH
Confidence 8888776666544 4567775530 00 00000000000 0111
Q ss_pred cccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHH-hcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013779 223 EGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 301 (436)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 301 (436)
...++++.|.|+....+++.++.. .+...+......+.+ +.+++. .+...+.....+.+++|+++.+++.||+|
T Consensus 271 ~~t~k~~~~~~~~~~fLia~~l~~----dg~~ti~~~~~i~a~~~lg~s~-~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g 345 (477)
T PF11700_consen 271 WRTFKEIRKLRQLFLFLIAYFLYS----DGVNTIISFAGIYATEVLGMST-TQLIVFGLVVQIVAIIGALLFGWLQDRFG 345 (477)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 123445555565555554444433 344455556666665 578877 77888888888999999999999999999
Q ss_pred Cc--cEeehhhHHHHHHHHHHHH--HHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHH
Q 013779 302 RR--PLLIGGVCGIALSLLLLSA--YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN 377 (436)
Q Consensus 302 ~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 377 (436)
.| +.+........+..+.... ..........+-+..+.+..+.......+...++.+|+.|+++.+..+|+....+
T Consensus 346 ~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~g 425 (477)
T PF11700_consen 346 PKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITG 425 (477)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 99 6666555444332222111 0000011222334444455566666777788899999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhC-cchhHHHHHHHHHHHHhhe
Q 013779 378 FGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 378 ~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 415 (436)
...+.+||.++|.+.+..| .+..+....++.+++.++.
T Consensus 426 k~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 426 KASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 7778887777777777655
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=174.67 Aligned_cols=325 Identities=13% Similarity=0.048 Sum_probs=208.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHH-HHHHHHHHHHHHHHhccchh------HHHHHHHHHHH
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGRKRE-LIIAAVLYALGALTTAYAPG------LGVLLVGRLLY 83 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~-l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 83 (436)
+|+++..+|.+..+.-+.-++..|+.|.++|| +||||. ++++.+..+++..++-..++ ...+.+...+.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 79999999999999999999999999999995 798754 55677788877776654442 44566677777
Q ss_pred hhhhhhhhhhhhhHhhhcCc-ccchhhHHHHHHHHHHHHHHHHHHHhhcccccc------ccchHHHhhhhHHHHHHHHH
Q 013779 84 GLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAV------GGWRYMYGLSAPLALLMGIG 156 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~------~~w~~~f~~~~~~~~~~~~~ 156 (436)
.++.........++..|..+ ++||++..++...+..+|..+++.+...+.... .+|+....+.+++.++...+
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999987 799999999999999999888877654433221 16777777777766665544
Q ss_pred Hh-cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCch
Q 013779 157 MW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 235 (436)
Q Consensus 157 ~~-~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (436)
.+ ..+|.++ ++ .++.+.+..++.+++|+.+
T Consensus 200 ~~~~~kE~~~------------------------------~~-------------------~~~~~~~~~l~~~~~Nk~~ 230 (460)
T PRK11462 200 CFFTTKERVE------------------------------AP-------------------PTTTSMREDLRDIWQNDQW 230 (460)
T ss_pred HHhcceeccC------------------------------CC-------------------ccCCCHHHHHHHHhCChHH
Confidence 43 3333211 00 0000112245667788877
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHH
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 315 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 315 (436)
+.+.....+.............+|.. ....+. ...+.......+..+++.++++++.||+++|+....+.....+
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~y~~~----y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 231 RIVGLLTIFNILAVCVRGGAMMYYVT----WILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAV 305 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhh----hhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 76654443443333222222233322 222222 3445566677788899999999999999998876544443333
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCC-------ccccchhhHHHHHHHHHHHHHHHHhh
Q 013779 316 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF 388 (436)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~ 388 (436)
....+... ...+........++ .+.......+..+++.+|..+ .+..|..++.......+|..+++.+.
T Consensus 306 ~~~~~~~~---~~~~~~~~~~~~~l-~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~ 381 (460)
T PRK11462 306 ISLAMFFV---PMQASITMFVFIFV-IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALI 381 (460)
T ss_pred HHHHHHHh---chhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211 11112222222222 233333344555667777644 23335555777788999999999999
Q ss_pred HHHHHHhCc
Q 013779 389 SPLKELLGA 397 (436)
Q Consensus 389 ~~~~~~~g~ 397 (436)
|.+.+..|+
T Consensus 382 g~iL~~~Gy 390 (460)
T PRK11462 382 GWMLAYGGY 390 (460)
T ss_pred HHHHHHcCC
Confidence 999887776
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=177.69 Aligned_cols=332 Identities=13% Similarity=0.016 Sum_probs=201.8
Q ss_pred CcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHH-HHHHHHHHHHHHHh-cc----ch--hHH
Q 013779 7 PELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL----GRKREL-IIAAVLYALGALTT-AY----AP--GLG 74 (436)
Q Consensus 7 p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~-~~----~~--~~~ 74 (436)
+.+.+. +|++..++|.+.+...+..++..++.|+++||. ||||.. .++.+...+...+. .. .+ ...
T Consensus 33 ~y~~~~--~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (448)
T PRK09848 33 SYYTDV--AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV 110 (448)
T ss_pred HHHHHH--cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence 445444 799999999999999999999999999999986 777754 55555454444443 11 11 233
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhhcCc-ccchhhHHHHHHHHH-----HHHHHHHHHHhhccccccc-cchHHHhhhh
Q 013779 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFI-----VLGILLGYFVGSFQINAVG-GWRYMYGLSA 147 (436)
Q Consensus 75 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~-----~~G~~l~~~l~~~l~~~~~-~w~~~f~~~~ 147 (436)
.++....+.+++.+...+...++..+..+ ++||.+..++...+. .++..++|.+++....... +|.....+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~ 190 (448)
T PRK09848 111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLA 190 (448)
T ss_pred HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 44555677788888888888887777664 467888877665443 3555666666554321110 1221122223
Q ss_pred HHHHHHHHHH-hcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccc
Q 013779 148 PLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF 226 (436)
Q Consensus 148 ~~~~~~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (436)
+++++..+.. ...+|+++ ++.++...+..+
T Consensus 191 v~~~~~~~~~~~~~~e~~~-------------------------------------------------~~~~~~~~~~~~ 221 (448)
T PRK09848 191 IAGMVLYFICFKSTRENVV-------------------------------------------------RIVAQPSLKISL 221 (448)
T ss_pred HHHHHHHHHHHcCcEeccC-------------------------------------------------CCccCCCHHHHH
Confidence 3333322222 23444221 000001112236
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEe
Q 013779 227 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 306 (436)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 306 (436)
++++|||.++...+...+....... .....|++.++....++...++......++.+++.++.+++.||+++|+.+
T Consensus 222 ~~l~~n~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~ 297 (448)
T PRK09848 222 QTLKRNRPLFMLCIGALCVLISTFA----VSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTF 297 (448)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHHH----HhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 6788999887766555554443332 333445555553333323444444444567788899999999999999999
Q ss_pred ehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCcc-------ccchhhHHHHHHHHH
Q 013779 307 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR-------TRGRGISLAVLTNFG 379 (436)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~ 379 (436)
..+..+..++...+... +..+.+.........+.......+..+++.+|..|.+ .+|...|+.+....+
T Consensus 298 ~~g~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl 373 (448)
T PRK09848 298 LIGALLGTCGYLLFFWV----SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC 373 (448)
T ss_pred HHHHHHHHHHHHHHHHc----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH
Confidence 88887777766555421 1122222222222233333334455567777776543 468999999999999
Q ss_pred HHHHHHHhhHHHHHHhCc
Q 013779 380 SNAIVTFAFSPLKELLGA 397 (436)
Q Consensus 380 g~~~~~~~~~~~~~~~g~ 397 (436)
|..+++.+.+.+.+..|+
T Consensus 374 g~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 374 GQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999888776
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-20 Score=163.61 Aligned_cols=279 Identities=17% Similarity=0.112 Sum_probs=189.4
Q ss_pred cchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccc------------
Q 013779 69 YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV------------ 136 (436)
Q Consensus 69 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~------------ 136 (436)
...+|+.++++-++.|.|.+...+..++++++..++|++.+.+++.+...++|..++|.+++.+....
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999776321
Q ss_pred ---ccchHHHhhhhHHHHHHHHHHhc--CCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHH
Q 013779 137 ---GGWRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 211 (436)
Q Consensus 137 ---~~w~~~f~~~~~~~~~~~~~~~~--~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (436)
.+|+++|++.+.+.++..+.+.+ +||..+ ++ ++ +
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-------------~~------------------~~-------~--- 124 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-------------AD------------------VA-------R--- 124 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-------------cc------------------cc-------c---
Confidence 27999999776665555444433 344210 00 00 0
Q ss_pred hhhhccccccccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhc---CCCcchhhHHHHHHHHHHHHH
Q 013779 212 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA---GFSAAADATRVSVVIGVFKLV 288 (436)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 288 (436)
.. .+++ ...++.+++|..+...+.. +.+.........|.+.|+++. +.+. .+.+...+.+..+.++
T Consensus 125 --~~-~~~~---~~~~~~~~~~~~~l~~~~~----f~yvg~e~~~~~w~~~yl~~~~~~g~s~-~~a~~~~s~~~~~~~i 193 (310)
T TIGR01272 125 --VS-SGDT---TQKTSAFQFTHLVLGALGI----FVYVGAEVSAGSFLVNFLSDPHALGLPE-DQAAHFTAYTWGGAMV 193 (310)
T ss_pred --cc-cccc---cchhhHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHHH
Confidence 00 0000 0112345555555433333 333333345777888888653 5555 7888899999999999
Q ss_pred HHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccch
Q 013779 289 MTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 368 (436)
Q Consensus 289 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 368 (436)
|+++.+++.||+++|+.+..+..+..++..+... .+.........+. +.+.....|...+...+..|+ +.++
T Consensus 194 Gr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~------~~~~~~~~~~~l~-g~~~s~i~P~~~s~a~~~~~~-~~~~ 265 (310)
T TIGR01272 194 GRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL------THGYVAMWFVLAL-GLFNSIMFPTIFSLALNALGR-HTSQ 265 (310)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhh-hhhh
Confidence 9999999999999999877666655555433322 1122222233333 333334445555777777674 4566
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHH
Q 013779 369 GISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIA 408 (436)
Q Consensus 369 ~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 408 (436)
+.++. ....+|+.+.|.+.|.+.|..|.+.++++...+.
T Consensus 266 asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 266 GSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred hHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 77774 5678999999999999999999888776544433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=162.10 Aligned_cols=331 Identities=21% Similarity=0.171 Sum_probs=235.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhH-HHHHHHHHHHHHHHHhccchh------HHHHHHHHHH
Q 013779 14 WFNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKR-ELIIAAVLYALGALTTAYAPG------LGVLLVGRLL 82 (436)
Q Consensus 14 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l 82 (436)
.+|+++..+|.+..+.-+--++..|+.|.+.| |+|||| .++++.+-.++.+.++-.+++ ....++...+
T Consensus 42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l 121 (467)
T COG2211 42 VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYML 121 (467)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHH
Confidence 38999999999999999999999999999999 588765 566788888888888877763 5567777888
Q ss_pred HhhhhhhhhhhhhhHhhhcCc-ccchhhHHHHHHHHHHHHHHHHHHHhhccccc------cccchHHHhhhhHHHHHHHH
Q 013779 83 YGLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINA------VGGWRYMYGLSAPLALLMGI 155 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~------~~~w~~~f~~~~~~~~~~~~ 155 (436)
.+++.........++..|..+ ++||.+..++...+.++|.++...+...+... ..||+....+.++++.+..+
T Consensus 122 ~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l 201 (467)
T COG2211 122 LGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLL 201 (467)
T ss_pred HHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999885 68999999999999999977766665544421 22788888888877777665
Q ss_pred HHhc-CCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCc
Q 013779 156 GMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 234 (436)
Q Consensus 156 ~~~~-~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (436)
..++ ..|.+. +.. ..++..+++.+..+..+++|+.
T Consensus 202 ~~~~~v~ER~~----------------------------~~~----------------~~~~~~~~~~~~~~~~~~~Nrp 237 (467)
T COG2211 202 FCFFNVKERVV----------------------------ETQ----------------PTKTGVKLKLKDSFLLIFKNRP 237 (467)
T ss_pred HHHHHhhcccC----------------------------ccc----------------cCcccccccHHHHHHHHHccch
Confidence 5543 444221 000 0000011222233456788888
Q ss_pred hhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHH
Q 013779 235 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 313 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 313 (436)
++...+...+.............+| .+. .+..+ ..............+++.++..++.+|+|+|++...+..+.
T Consensus 238 ~~~~l~~~l~~~~~~~i~~s~~~yy----~~y~lg~~~-l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~ 312 (467)
T COG2211 238 LLLLLLMNLLLFIAFNIRGSIMVYY----VTYVLGDPE-LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLL 312 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhee----EEEEcCChH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHH
Confidence 8877765544444443322233333 333 23333 45566666777777777999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCC-------ccccchhhHHHHHHHHHHHHHHHH
Q 013779 314 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTF 386 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~ 386 (436)
+++..++.+.. .+....+++..+..+.......++.|++.+|..+ .+..|...|...++..+|.+++..
T Consensus 313 ~i~~~~~~f~~----~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~ 388 (467)
T COG2211 313 AVGYLLLYFTP----AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF 388 (467)
T ss_pred HHHHHHHHhhc----CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 88877776542 2333333344344444455566788999998744 345688889999999999999999
Q ss_pred hhHHHHHHhCc
Q 013779 387 AFSPLKELLGA 397 (436)
Q Consensus 387 ~~~~~~~~~g~ 397 (436)
+.|+..+..|+
T Consensus 389 ~~g~~L~~~Gy 399 (467)
T COG2211 389 IPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHcCC
Confidence 99999988875
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-17 Score=146.09 Aligned_cols=353 Identities=17% Similarity=0.181 Sum_probs=241.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHHHhccchh---HHHHHHHHHHHhhhhhhhhhh
Q 013779 18 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI-IAAVLYALGALTTAYAPG---LGVLLVGRLLYGLGIGLAMHG 93 (436)
Q Consensus 18 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~ 93 (436)
+.+..+...++..+..++.+|+.|.++|+.|+||... ....+..++..+..+.++ ++..++...+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 3467789999999999999999999999999776544 455555555566666544 556667788888998999999
Q ss_pred hhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHh--hcccc---------------ccccchHHHhhhhHHHHHHHHH
Q 013779 94 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG--SFQIN---------------AVGGWRYMYGLSAPLALLMGIG 156 (436)
Q Consensus 94 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~--~~l~~---------------~~~~w~~~f~~~~~~~~~~~~~ 156 (436)
..+++.+..++++-++..+.-.....+|..+.-+.. ..... ....-|..+.+.++--++..+.
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999998888888877777777766655442 11111 1114577777777776666554
Q ss_pred Hh-cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCch
Q 013779 157 MW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 235 (436)
Q Consensus 157 ~~-~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (436)
.+ ..++.++- .+.+.+...+ .-++.+.+++++.++++.
T Consensus 216 m~~~v~~~~~~--------------------------------~~~~~~~l~~---------g~k~L~~t~k~i~~~~~i 254 (438)
T COG2270 216 MILNVHDAEKI--------------------------------SSPPPTALRN---------GFKELKSTFKEIRGRKNL 254 (438)
T ss_pred HHhcccccccc--------------------------------cccchHHHHH---------HHHHHHHHHHHHhcccch
Confidence 44 44443320 0000000000 011223356677777776
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHH-hcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHH
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 314 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 314 (436)
.+++++.++..- +.+.+..+...+-. +.|.++ .+..+......+.+++++++.|++.||++.|+++..++.+..
T Consensus 255 ~~FLiA~~~~~D----Gv~til~~~~~fg~~~~gls~-~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~ 329 (438)
T COG2270 255 VLFLIARFFYID----GVNTILAMGGVFGAADLGLSS-TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS 329 (438)
T ss_pred HHHHHHHHHHHh----hHHHHHHHHHHHHHHHcCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence 666655544433 33456666666666 677777 888888999999999999999999999999999888887776
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 013779 315 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 394 (436)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 394 (436)
+..+..... . .......+.+..+.+.........++..+.+|+++.++.+|+++..+...+.++|..++.+.+.
T Consensus 330 ~~~~~~~~~-----~-~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i 403 (438)
T COG2270 330 IAALYLIFL-----E-GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI 403 (438)
T ss_pred HHHHHHHHc-----c-ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence 665554432 1 2223333334444444555667789999999999999999999999999999999999999998
Q ss_pred hCc-chhHHHHHHHHHHHHhheeEecccCC
Q 013779 395 LGA-ENIFLLFAAIAFLAVLFIVRTVPETK 423 (436)
Q Consensus 395 ~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (436)
+|. +..+....++..++.++ +...|+.+
T Consensus 404 Tg~~r~g~~~i~vll~iGl~~-L~~v~~~~ 432 (438)
T COG2270 404 TGSSRAGVLSIIVLLLIGLLL-LLRVKVPG 432 (438)
T ss_pred hcchhhHHHHHHHHHHhhHhh-EEeecCCC
Confidence 884 44555555555555554 44455443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-20 Score=152.30 Aligned_cols=360 Identities=16% Similarity=0.119 Sum_probs=220.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTA---YAPGLGVLLVGRLLYGLGIGLA 90 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~ 90 (436)
.+++.++..++.+.|.....+..+++|++.|| +|-|..-++-++...++.+..+ ..+.+|.+.++|++.|+|.-..
T Consensus 74 ~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESl 153 (459)
T KOG4686|consen 74 SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESL 153 (459)
T ss_pred cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhh
Confidence 77888899999999999999999999999995 6877766665555666766654 4688999999999999998888
Q ss_pred hhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCChHHHHHH
Q 013779 91 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 170 (436)
Q Consensus 91 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~~ 170 (436)
-++-+++..-|+..||.+.++|+......+|..+-..+.+++.++. +- ++-...-..+...+.+-...-...+...
T Consensus 154 AVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~-~~---~~~~~ghT~LG~~l~~~~~tc~~slica 229 (459)
T KOG4686|consen 154 AVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM-GR---MFPGVGHTLLGLWLCFEVKTCKQSLICA 229 (459)
T ss_pred hhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH-HH---hcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999888777777766543 11 1100011111111110000000000000
Q ss_pred hhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHHHHH
Q 013779 171 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 250 (436)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (436)
... .-.+++++.++++-+... .+..+..-..-+ .|.+|.+.+.+.+.....+
T Consensus 230 --l~l---g~~D~rAerilh~e~g~~----------------------Ge~pkLtdv~~f-~ppfw~~~iicv~yyva~f 281 (459)
T KOG4686|consen 230 --LSL---GLSDDRAERILHLEEGFL----------------------GEEPKLTDVNTF-YPPFWVLVIICVLYYVAWF 281 (459)
T ss_pred --HHh---hhhhhHHHHHHhhhcCcc----------------------cCCccccccccc-CccHHHHHHHHHHHHHHHH
Confidence 000 000111222221111100 000000001112 2456666655555554443
Q ss_pred hChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcC
Q 013779 251 TGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG 329 (436)
Q Consensus 251 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (436)
. +....|.++++ .|+++ ..++.+.+.......+..++.|.++||.|++-..+.+..+..+..-....+.. .
T Consensus 282 P----Fi~lg~~fF~~rfGlS~-~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~---l 353 (459)
T KOG4686|consen 282 P----FITLGPMFFQKRFGLSA-VSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF---L 353 (459)
T ss_pred H----HhhhhHHHHHHhhCCCh-hhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh---c
Confidence 2 33445555554 78877 66666666666777788899999999999998877665554444333332221 2
Q ss_pred CchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC-cc---hhHHHHH
Q 013779 330 FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AE---NIFLLFA 405 (436)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~---~~~~~~~ 405 (436)
+++.....+-+.... .....|..++.+.|.++-|++.|.++.+.++|-++.|.+.|.+.|..| +. ..|+...
T Consensus 354 sPy~~m~~lGLsysl----lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~ 429 (459)
T KOG4686|consen 354 SPYTSMTFLGLSYSL----LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG 429 (459)
T ss_pred cHHHHHHHHhhhHHH----HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence 333332222222111 122345667778899999999999999999999999999999998776 32 2344444
Q ss_pred HHHHHHHhheeEe
Q 013779 406 AIAFLAVLFIVRT 418 (436)
Q Consensus 406 ~~~~~~~~~~~~~ 418 (436)
.+.+....+.+.+
T Consensus 430 ~~aL~svgil~~~ 442 (459)
T KOG4686|consen 430 LMALTSVGILFYL 442 (459)
T ss_pred HHHHHHHHHHhhe
Confidence 4555444444433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=154.80 Aligned_cols=398 Identities=15% Similarity=0.101 Sum_probs=251.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHHhhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAM 91 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 91 (436)
+|+++++..-+.+.|..-.-+..+++|+++||+ |+||++..+.++..++.++.+.+. +...++++-.+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 669999999999999999999999999999996 999999999999999999999984 78899999999999999999
Q ss_pred hhhhhHhhhcCcc--cchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCChHHHHH
Q 013779 92 HGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL 169 (436)
Q Consensus 92 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~ 169 (436)
+...+++.|.+|+ .+|...++++.++.++|..++|++.+++.+.. ||+..|-..++-....++..+..+..- ..
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-g~~~gF~~aavGm~~gl~~f~~~~r~~---~~ 211 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-GWHVGFGLAAVGMIIGLVIFLLGRRHV---KG 211 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHccchh---cC
Confidence 9999999999975 34778899999999999999999999999888 999999998887777666554433211 00
Q ss_pred HhhcCcCccchHHHHH---HHHHhhhhcCCCCCcchhhhHHHHHHhh--hhcc----ccccccccchhhccCCchhHHHH
Q 013779 170 RAVQGKGSLQEYKEQA---ISALGKLRRRPPGDKLSERQIEDTLVSL--KSSY----TDEKSEGSFLEVFQGPNLKAFII 240 (436)
Q Consensus 170 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 240 (436)
...+.+.......+.. .......-...--.....+......... ..+. +..+.++...+--|-....++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl 291 (498)
T COG3104 212 IGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFL 291 (498)
T ss_pred CCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHH
Confidence 0000000000000000 0000000000000000000000000000 0000 00000000000001111223444
Q ss_pred HHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc--cE-----eehhhHHH
Q 013779 241 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR--PL-----LIGGVCGI 313 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~-----~~~~~~~~ 313 (436)
...+.+..+....+.+..|.....++..+.-.....+..+...+..++..++..++..|.+++ .. ..+++.++
T Consensus 292 ~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~ 371 (498)
T COG3104 292 FAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHH
Confidence 444555555555555666655544433121224667788888888888888877777774443 11 23455566
Q ss_pred HHHHHHHHHHHHHHc----CCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhH
Q 013779 314 ALSLLLLSAYYKILG----GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 389 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 389 (436)
..+++.+........ ..+.++++...++........+|+..+++....|+...+..++........+..++..+.+
T Consensus 372 g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 372 GLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 666665554422111 2345555566666677788889999999999999999999999988888888777777666
Q ss_pred H------HHHHhCcchhHHHHHHHHHHHHhhee
Q 013779 390 P------LKELLGAENIFLLFAAIAFLAVLFIV 416 (436)
Q Consensus 390 ~------~~~~~g~~~~~~~~~~~~~~~~~~~~ 416 (436)
. ..+.......|+..+...++......
T Consensus 452 ~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~ 484 (498)
T COG3104 452 LTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL 484 (498)
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 2 33444455677777777666655443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=146.16 Aligned_cols=359 Identities=16% Similarity=0.128 Sum_probs=245.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc------hhHH--HHHHHHHHHhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA------PGLG--VLLVGRLLYGLG 86 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l~G~~ 86 (436)
+| |.+..-|+.-+|++.+....+++-|+.||+|-|....++.++.+++..+-..+ +.++ ....+..+.+.+
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~A 153 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAA 153 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHh
Confidence 55 66677799999999999999999999999999999999999999999887664 3455 777888999998
Q ss_pred hhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccc-----ccchH--HHhhhhHHHHHHHHHH-h
Q 013779 87 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-----GGWRY--MYGLSAPLALLMGIGM-W 158 (436)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~-----~~w~~--~f~~~~~~~~~~~~~~-~ 158 (436)
+-........+..-|++++||..+..+-.++..+|.++|.++...+.... ..|.. .|+....++.+.+.+. +
T Consensus 154 q~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~ 233 (480)
T KOG2563|consen 154 QPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLF 233 (480)
T ss_pred hhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887888899999999999999999999999999999998887654 15655 3554444444433332 2
Q ss_pred cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHH
Q 013779 159 SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAF 238 (436)
Q Consensus 159 ~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (436)
..+|.|+.-. ... +...++..-..+.++.++++++...
T Consensus 234 ~~~~~P~tPp-----------------------------------s~s-------~~~~~~~~f~~si~~~~~n~~F~il 271 (480)
T KOG2563|consen 234 VFTKKPPTPP-----------------------------------SAS-------QAALQDASFPKSIKSCFKNRQFIIL 271 (480)
T ss_pred hcCCCCCCCC-----------------------------------chh-------HhhhhcCcHHHHHHHHHcCccHHHH
Confidence 3333332000 000 0000011234467888999988777
Q ss_pred HHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccE-eehhhHHHHHHH
Q 013779 239 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL-LIGGVCGIALSL 317 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-~~~~~~~~~~~~ 317 (436)
.+++........ .....+...+...+++. ..+|.......++++++..+.|.+.||.+.-+. .........++.
T Consensus 272 ~~~ygi~~g~F~----~l~~~l~~~l~~sgY~~-~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~ 346 (480)
T KOG2563|consen 272 AICYGIGLGLFN----SLSTLLNLALCPSGYEG-VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT 346 (480)
T ss_pred HHHHhhhHHHHH----HHHHHhhhccccccCCc-cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 765555544433 23333332334455555 688999999999999999999999999876444 333333333332
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC-
Q 013779 318 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG- 396 (436)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g- 396 (436)
..+. .... .....+++...+...+.++.+..|+..-+..|..-+..-++..|+.+..+++-+.+-..+.+...+..+
T Consensus 347 ~~l~-~~t~-~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~ 424 (480)
T KOG2563|consen 347 LMLL-TCTL-FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGP 424 (480)
T ss_pred HHHH-Hhhc-cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCC
Confidence 2222 1111 122334444555566677778888888888887666778899999999999999999999998888777
Q ss_pred ---cchhHHHHHHHHHHHHhheeEecccCC
Q 013779 397 ---AENIFLLFAAIAFLAVLFIVRTVPETK 423 (436)
Q Consensus 397 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (436)
+...-+.....+.+...+..++.++.+
T Consensus 425 ~~~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 425 PGNTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred CCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 444444455555555554444444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-15 Score=132.21 Aligned_cols=348 Identities=17% Similarity=0.144 Sum_probs=228.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHH-HHHHHHHHHHHHHhccc-----h-------h--H-
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-----RKREL-IIAAVLYALGALTTAYA-----P-------G--L- 73 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l-~~~~~~~~~~~~~~~~~-----~-------~--~- 73 (436)
++++..-.+.+.++..+... ..+.+|+.+|+.+ ||..+ ..|..+...+..+.+++ . + .
T Consensus 10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g 88 (403)
T PF03209_consen 10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG 88 (403)
T ss_pred hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence 89999999999998887765 6899999999998 77654 44666666665555442 2 1 1
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHH-
Q 013779 74 -GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL- 151 (436)
Q Consensus 74 -~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~- 151 (436)
....+.-.+.|+|.+...++..+++.|..|+|+|+++.++.....-+|.+++..+.+.+.+.+..-|..-.+.+...+
T Consensus 89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~ 168 (403)
T PF03209_consen 89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIA 168 (403)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 244556678899999999999999999999999999999999999999999999999888776444444443333222
Q ss_pred -HHHHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhc
Q 013779 152 -LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 230 (436)
Q Consensus 152 -~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (436)
+..++..+=.|.+. .+. . ..+++++..-...++++.
T Consensus 169 ~~l~~ia~wg~E~r~-----------------------------~~~-~-------------~~~~~~~~~f~~a~~~~~ 205 (403)
T PF03209_consen 169 LLLNLIALWGQEPRR-----------------------------SRR-A-------------AAAERPRPPFREAWRQVW 205 (403)
T ss_pred HHHHHHHHHhcccCC-----------------------------ccc-c-------------cCCCCCCccHHHHHHHHH
Confidence 22222222222111 000 0 000111222234567777
Q ss_pred cCCchhHHHHHHHHHHHHHHhChhhHHhchHHHH-HhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh-hcCCccEeeh
Q 013779 231 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD-DLGRRPLLIG 308 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~ 308 (436)
.+|+.++++...++..+..+. ....+-+|- +-.|.+. .+...++...+.+.+++-.+.+++.. |.++++...+
T Consensus 206 ~~~~a~~f~~fl~l~t~a~~~----QD~iLEPygg~Vfgmsv-~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~ 280 (403)
T PF03209_consen 206 ASPQARRFFVFLFLGTLAFFM----QDVILEPYGGEVFGMSV-GETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAAL 280 (403)
T ss_pred hCCChhHHHHHHHHHHHHHHh----hHHHcCCchhHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 888888877766666555433 221221222 3356665 78889999999999999999998776 5666776667
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhh
Q 013779 309 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 388 (436)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 388 (436)
+...+.+++.++..... ..+.+.......++ +.....+..-..+...+..++++.|..+|.....+.+...++..+.
T Consensus 281 G~~~~~~~f~lii~a~~--~~~~~~~~~~~~l~-G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~G 357 (403)
T PF03209_consen 281 GCLLGALAFALIILAGP--LGSPWLFRPGVFLL-GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLG 357 (403)
T ss_pred HHHHHHHHHHHHHHHHh--cccchHHHHHHHHH-HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666654432 12333333333333 3333333333446667787889999999999999999999999988
Q ss_pred HHHHHHh----------CcchhHHHHHHHHHHHHhh
Q 013779 389 SPLKELL----------GAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 389 ~~~~~~~----------g~~~~~~~~~~~~~~~~~~ 414 (436)
|.+.|.. +|..+|.+-++..+++..+
T Consensus 358 G~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 358 GALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 8887642 2344555555555555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=150.92 Aligned_cols=183 Identities=14% Similarity=0.085 Sum_probs=139.8
Q ss_pred cCccc-CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---hccchhHHHHHHHHH
Q 013779 6 SPELS-GTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT---TAYAPGLGVLLVGRL 81 (436)
Q Consensus 6 ~p~i~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~ 81 (436)
+|.+. ++ +|.+..+.++..+...++..++.+..|+++||+|||+.+..+.++..++... ...+++...++++|+
T Consensus 273 ~p~~l~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (490)
T PRK10642 273 MPSYLSHN--LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLL 350 (490)
T ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44444 34 7888888888888899999999999999999999999988877654433322 223456778888999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 161 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 161 (436)
+.|++.+........++.|.+|++.|+++++.......++..++|.+.+++.+...+|+.++++..+++++..+..+++|
T Consensus 351 ~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~p 430 (490)
T PRK10642 351 MLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMK 430 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 99988777777788888999999999999998555566667788888888776553688887777777777777777789
Q ss_pred CChHHHHHHhhcCcCccchHHHHHHHHHhhhhc
Q 013779 162 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRR 194 (436)
Q Consensus 162 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (436)
|+|+|+..+ ..+.+++.||+++.+++++.
T Consensus 431 es~~~~~~~----~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 431 ETANRPLKG----ATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cccCCCCCC----ccccccchhhHHHHhhcccc
Confidence 999976542 12335677888888888873
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-18 Score=161.79 Aligned_cols=369 Identities=19% Similarity=0.210 Sum_probs=3.0
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch-----------
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----------- 71 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----------- 71 (436)
...+..+++. |+++.++.|++.+.+-++..+..++..++.+|..|-|++-+|.++.+++++++++-+
T Consensus 23 ~~~lttiErR--F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~ 100 (539)
T PF03137_consen 23 NSSLTTIERR--FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEA 100 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccc
Confidence 4567788888 999999999999999999999999999999999999999999999999998877510
Q ss_pred ---------------------------------------hHHHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHH
Q 013779 72 ---------------------------------------GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLIS 112 (436)
Q Consensus 72 ---------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 112 (436)
-+..++++.++.|+|.+..++...+|+-|..++++-+.++|
T Consensus 101 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiG 180 (539)
T PF03137_consen 101 SNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIG 180 (539)
T ss_dssp ---------------------------------------------------SSS--------------------------
T ss_pred cccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchh
Confidence 03478899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc---------------------ccchHHHhhhhHHHHHHHHHHhcCCCChHHHHHHh
Q 013779 113 LKELFIVLGILLGYFVGSFQINAV---------------------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA 171 (436)
Q Consensus 113 ~~~~~~~~G~~l~~~l~~~l~~~~---------------------~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~ 171 (436)
+..+...+|.++|.++++.....+ +.|..-|++.+.+.++..+..+.+|++-+-.
T Consensus 181 i~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~---- 256 (539)
T PF03137_consen 181 ILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT---- 256 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc----
Confidence 999999999999999998876321 1365667777777777777777777642200
Q ss_pred hcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHHHHHh
Q 013779 172 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQIT 251 (436)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (436)
++..++.+. ++.+.++. + .++.++..+........+.-....+++++||.+....++.....+
T Consensus 257 -------~~~~~~~~~--~~~~~~~~-~---~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~---- 319 (539)
T PF03137_consen 257 -------SERQEEKES--SERKEEDS-D---KDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF---- 319 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------ccccchhhh--hhcchhhh-h---hhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH----
Confidence 000000000 00000000 0 000000000000011123334567788888877665554444333
Q ss_pred ChhhHHhchHHHHHh-cCCCcchhhHHHHHHHH-HHHHHHHHHHHHHHhhcCC--ccEeehhhHHHHHHHHHHHHHH---
Q 013779 252 GQPSVLYYAGPILQS-AGFSAAADATRVSVVIG-VFKLVMTWIAVAKVDDLGR--RPLLIGGVCGIALSLLLLSAYY--- 324 (436)
Q Consensus 252 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~~~~~~--- 324 (436)
....+..|.|-|++. .+.++ ..+.++..... .+..+|.+++|++.+|++- |+..........+..+......
T Consensus 320 ~~~G~~tF~pKylE~QF~~sa-s~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~ 398 (539)
T PF03137_consen 320 IVSGFATFLPKYLESQFGLSA-SQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLG 398 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCH-HHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeec
Confidence 334578888988877 45444 55555554443 3677888999999998754 4444333333333222211000
Q ss_pred -----------HH-------H-------------------------cC--Cch-HHHHHHHHHHHHhhcccccccchhcc
Q 013779 325 -----------KI-------L-------------------------GG--FPL-VAVSALLLYVGCYQISFGPISWLMVS 358 (436)
Q Consensus 325 -----------~~-------~-------------------------~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (436)
.. . .+ ... ..+...++..........|.. ..+-
T Consensus 399 C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~-~i~L 477 (539)
T PF03137_consen 399 CPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST-LITL 477 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh-eeee
Confidence 00 0 00 011 112222222233334444554 5556
Q ss_pred ccCCccccchhhHHHHHH-HHHHHHHHHHhhHHHHHHhC
Q 013779 359 EIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELLG 396 (436)
Q Consensus 359 ~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~g 396 (436)
+.+|+++|+.+.|+...+ +-+|.+-+|+++|.+.|..-
T Consensus 478 R~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC 516 (539)
T PF03137_consen 478 RCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC 516 (539)
T ss_dssp ---------------------------------------
T ss_pred ccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence 788999999999998776 56677889999999998753
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=122.32 Aligned_cols=136 Identities=31% Similarity=0.446 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcCccc
Q 013779 26 VSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ 105 (436)
Q Consensus 26 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 105 (436)
.+.+.++..++.++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+...+++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567888999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cCCC
Q 013779 106 IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPP 162 (436)
Q Consensus 106 ~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~e 162 (436)
+|++..++.+....+|..+++.+++.+.+.. +|++.+++.+...++..+..+ ..||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999988776 899999998887777665554 4444
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=135.62 Aligned_cols=364 Identities=16% Similarity=0.168 Sum_probs=213.8
Q ss_pred CcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHh-cc---ch-hHHHHHHHH
Q 013779 7 PELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR-KRELIIAAVLYALGALTT-AY---AP-GLGVLLVGR 80 (436)
Q Consensus 7 p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~-~~---~~-~~~~l~~~r 80 (436)
|.+++ -|.+.+.+..|++.++..++.+++++..|+...|.+. |+.++.+.++..+++++. +. .+ ..+.++++|
T Consensus 59 pYl~~-lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R 137 (488)
T KOG2325|consen 59 PYLQK-LDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVAR 137 (488)
T ss_pred hhhhh-cCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 44444 3378889999999999999999999999999999997 888999999999999887 33 23 678999999
Q ss_pred HHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccc------------ccchHHHhhhhH
Q 013779 81 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV------------GGWRYMYGLSAP 148 (436)
Q Consensus 81 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~------------~~w~~~f~~~~~ 148 (436)
++.|+|.+ ......+|+++....++|.++++....+..+|.++||.++..+..-. +-+..+-|+.++
T Consensus 138 ~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i 216 (488)
T KOG2325|consen 138 ILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAI 216 (488)
T ss_pred HHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHH
Confidence 99999977 56778889999888899999999999988899988888876654211 012345677777
Q ss_pred HHHHHHHHH-hcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccch
Q 013779 149 LALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 227 (436)
Q Consensus 149 ~~~~~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (436)
+.++..+.. +++.|.++- ..+++..++ ++ +..+.++.+..
T Consensus 217 ~~i~~~v~i~~~f~E~~~~----------------------------~~~~~~~~~---~~---~~~~~~~~~~~----- 257 (488)
T KOG2325|consen 217 LWIIYIVIILFFFKEVYRG----------------------------IIDKKKRSV---EE---EKSDIEKVKKP----- 257 (488)
T ss_pred HHHHHHHHHHhheeecccC----------------------------ccccccccc---hh---hccchhhhccC-----
Confidence 777765554 456665430 000000000 00 00000000001
Q ss_pred hhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchh---hHHHHHHHHHHHHHHHHHHHHHH-hhcCCc
Q 013779 228 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAAD---ATRVSVVIGVFKLVMTWIAVAKV-DDLGRR 303 (436)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~-d~~~~~ 303 (436)
+......+.+........+.....-..+.+..+...+...... .+...+..++..+...+...... .++.+|
T Consensus 258 ----~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r 333 (488)
T KOG2325|consen 258 ----KLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKR 333 (488)
T ss_pred ----ChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 1111222222222222222222222334444444455544333 33333333343333333333332 233445
Q ss_pred cEeehhhHHHHHHHHHHHHHHHHHc-------------------------CCchHH-HHHHHHHHHHhhcccccccchhc
Q 013779 304 PLLIGGVCGIALSLLLLSAYYKILG-------------------------GFPLVA-VSALLLYVGCYQISFGPISWLMV 357 (436)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 357 (436)
+.+..+.+....+..+......... ..+... +....+..+...........+.-
T Consensus 334 ~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tly 413 (488)
T KOG2325|consen 334 RIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLY 413 (488)
T ss_pred eeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHH
Confidence 5555554443333333221110000 000111 11111111111111112233677
Q ss_pred cccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhhe
Q 013779 358 SEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 358 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 415 (436)
+|...++.++++.++.......+..++|.+........|+++.+.+.++..++...+.
T Consensus 414 SkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 414 SKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW 471 (488)
T ss_pred HHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999888877766666555443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=135.97 Aligned_cols=269 Identities=20% Similarity=0.291 Sum_probs=191.5
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc-------------
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA------------- 70 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------- 70 (436)
..+-.+++. |+++.++.|++.+.+-++..+...+..+..-|..|-|++-+|+++.+++++++++-
T Consensus 118 s~IttiErR--F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~ 195 (735)
T KOG3626|consen 118 SVITTIERR--FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEV 195 (735)
T ss_pred hhhhhhhhh--cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhh
Confidence 345567777 99999999999999999999999999999999999999999999999999998762
Q ss_pred -------h---------------------------h----H-HHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHH
Q 013779 71 -------P---------------------------G----L-GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLI 111 (436)
Q Consensus 71 -------~---------------------------~----~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 111 (436)
+ + + ..++++.++.|+|....++...+|+-|...+++-+..+
T Consensus 196 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYl 275 (735)
T KOG3626|consen 196 IKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYL 275 (735)
T ss_pred hhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHH
Confidence 0 0 2 26778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc------------------ccchHHHhhhhHHHHHHHHHHhcCCCChHHHHHHhhc
Q 013779 112 SLKELFIVLGILLGYFVGSFQINAV------------------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 173 (436)
Q Consensus 112 ~~~~~~~~~G~~l~~~l~~~l~~~~------------------~~w~~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~ 173 (436)
|+..+...+|.++|.++++++...+ +.|..-|++.+.+.++..+.++++|.+.+
T Consensus 276 gi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp-------- 347 (735)
T KOG3626|consen 276 GILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP-------- 347 (735)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc--------
Confidence 9999999999999999999875321 14667788888888888888888887542
Q ss_pred CcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHHHHHhCh
Q 013779 174 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 253 (436)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (436)
+..++...+..+..+.+++..+. +.+. ..+-++-....+++++||.+...+++. ......+
T Consensus 348 -----~~~~~~~~~~~~~~k~~~~~~~~-~~~~---------~~~ikdfp~s~~~ll~N~if~~~~l~~----~~~~~~~ 408 (735)
T KOG3626|consen 348 -----KSQKRKRARDLHVLKTESGGAKS-DKTF---------GKKIKDFPKSIKRLLSNPIFMLVVLAS----VIESLAI 408 (735)
T ss_pred -----cccccchhhhhcccccccccccC-Ccch---------hhhHHHHHHHHHHHhcCchHHHHHHHH----HHHHHHH
Confidence 00000000000000000000000 0000 001112234577888888766555443 3444444
Q ss_pred hhHHhchHHHHHh-cCCCcchhhHHHHHHHHH-HHHHHHHHHHHHHhhcCC
Q 013779 254 PSVLYYAGPILQS-AGFSAAADATRVSVVIGV-FKLVMTWIAVAKVDDLGR 302 (436)
Q Consensus 254 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~ 302 (436)
..+..|+|-|++. ++.+. ..+..+.....+ +..+|.+++|++.+|+..
T Consensus 409 ~G~~tFlPKyLE~Qfg~sa-s~An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 409 TGYITFLPKYLETQFGISA-SLANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred hhHHHhhHHHHHHHcCCCH-HHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 5688899999977 55554 666666644444 556778889999998754
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=133.60 Aligned_cols=353 Identities=18% Similarity=0.115 Sum_probs=214.2
Q ss_pred ccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHhccc----hhHHH
Q 013779 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-----RKRELIIAAVLYALGALTTAYA----PGLGV 75 (436)
Q Consensus 5 ~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~~----~~~~~ 75 (436)
..|.+.++ +|+++++.....+...+...+ -++.|.++|.+- ||+-++++.++..++.+.++.. .+...
T Consensus 12 ~~~~l~~~--l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 12 IYPFLKDD--LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHH--cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 44566666 999999999998888887655 566899999763 5555666777775555555442 35667
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHhhhcCc--ccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHH
Q 013779 76 LLVGRLLYGLGIGLAMHGAPLYIAETCP--SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 153 (436)
Q Consensus 76 l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~ 153 (436)
..++-++..+|.+.......+++.|... +++|+...+.......+|.+++..++|.+.+.. ++|..|.+.+++..+.
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~~~~l~ 167 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAALPLLM 167 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHHHHHHH
Confidence 7778888999999999999999999873 344788888888999999999999999988887 8999999888777776
Q ss_pred HHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCC
Q 013779 154 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 233 (436)
Q Consensus 154 ~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (436)
.+..+++.|+.+ .+.++ +. ....++ + . +.... ..++.....++.++.+
T Consensus 168 ~~~~~~~~~e~~--------------~~~~~--~~-~~~~~~-~-~---~~~~~----------~~~~~~~~l~~~~~~~ 215 (433)
T PF03092_consen 168 LIVALFLLEERK--------------VRPAD--EV-FSFGKE-E-V---PCLFG----------SFREQLSELWRALQQR 215 (433)
T ss_pred HHHHHHhhhhcc--------------ccccc--hh-hccccc-c-c---chhhH----------HHHHHHHHHHHHHhhh
Confidence 555544433210 00000 00 000000 0 0 00000 0111122345566666
Q ss_pred chhHHHH-HHHHHHHHHHhChhh-HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhH
Q 013779 234 NLKAFII-GGGLVLFQQITGQPS-VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 311 (436)
Q Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 311 (436)
..+...+ ..++..+.... ... ..++........++++ ...+.+..+..++.+++..+..+...+..-|+++....+
T Consensus 216 ~i~~~~~~~~~~~~~~~~~-~~a~~fy~~~~~~~gp~fs~-~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~ 293 (433)
T PF03092_consen 216 AIWQPILFFIFFFNLPPSI-SSASSFYFQTDALGGPHFSP-SFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTL 293 (433)
T ss_pred HHHHHHHHHHHHHHhccCC-CCccEEEEEeccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5554443 22222221111 111 1222211111112444 555666666667777777777666555555665544444
Q ss_pred HHHHHHHHHHHHH-----HHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHH
Q 013779 312 GIALSLLLLSAYY-----KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 386 (436)
Q Consensus 312 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 386 (436)
...+..+.-.... ...-++.+..+.-..+........+.|.. ...+|+.|+...|+.+++...+.++|..++..
T Consensus 294 ~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~ 372 (433)
T PF03092_consen 294 VSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSST 372 (433)
T ss_pred HHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3333222111000 00001123333334444445555566665 78899999999999999999999999999999
Q ss_pred hhHHHHHHhC
Q 013779 387 AFSPLKELLG 396 (436)
Q Consensus 387 ~~~~~~~~~g 396 (436)
+...+.+..+
T Consensus 373 lg~~l~~~~~ 382 (433)
T PF03092_consen 373 LGAFLMELFG 382 (433)
T ss_pred HHHHHHHHcC
Confidence 9988887766
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=139.50 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhc
Q 013779 22 LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET 101 (436)
Q Consensus 22 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 101 (436)
..+...+..++..++.++.|+++||+|||+++.++.++.+++.++.++.++...+++.+++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778899999999999999999999999999999999999999988888888889999998888999999999999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCCh
Q 013779 102 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 164 (436)
Q Consensus 102 ~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~ 164 (436)
+|.++|++++|+..+...+|.+++|.+++.+... +...+|++.+++.++..++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999887654 456788888888777777777788864
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-13 Score=124.45 Aligned_cols=317 Identities=18% Similarity=0.202 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhh--hhhhhhhhhhHhhhcCccc
Q 013779 28 GSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG--IGLAMHGAPLYIAETCPSQ 105 (436)
Q Consensus 28 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~ 105 (436)
...+...+.++..|.++||+|||..+.+..+...+..+...+.. +|.++ +.|+. .+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 34678889999999999999999999999998888888777765 44333 44433 3445667788899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-hcCCCChHHHHHHhhcCcCccchHHHH
Q 013779 106 IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQ 184 (436)
Q Consensus 106 ~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~es~~~l~~~~~~~~~~~~~~~~~ 184 (436)
+|....++.......+..++|.+++.+.+.. +.-..|.+..+..++..+.. .++||+-.- ++.++
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~-------------~~~~~ 210 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIALVFLIAAASGILSLLYMLLFLPESLQE-------------KERSD 210 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhhccccccCc-------------ccccc
Confidence 9999999999999999999999999988876 88888999888888776654 578886420 00000
Q ss_pred HHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHHHHHHhChh-hHHhchHHH
Q 013779 185 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP-SVLYYAGPI 263 (436)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 263 (436)
...+...... ... .+..+........-.++....+.....+.......+.. ...+ +
T Consensus 211 -----~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~----y 267 (463)
T KOG2816|consen 211 -----ATLRELTPGS-LDS-------------SHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLL----Y 267 (463)
T ss_pred -----ccccccCCCc-ccc-------------hhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEE----E
Confidence 0000000000 000 00000001111111122222222222222222222111 1112 2
Q ss_pred HHh-cCCCcchhhHHHHHHHHHHHHHHHHHHH-HHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 013779 264 LQS-AGFSAAADATRVSVVIGVFKLVMTWIAV-AKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLY 341 (436)
Q Consensus 264 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (436)
++. .+.+. .+.+.+.+.......++.++.. .+...++.|+....++..-.+......+. +..|.........
T Consensus 268 l~~~f~w~~-~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-----~~~w~~~~~~v~~ 341 (463)
T KOG2816|consen 268 LKAKFGWNK-KEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-----TETWMMFAAGVVV 341 (463)
T ss_pred EeeecCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-----ccchhhhHHHHHH
Confidence 333 45655 6777777777777888877766 67777888887777777777776666653 2333333322222
Q ss_pred HHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 013779 342 VGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 394 (436)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 394 (436)
.......|...+..+...+++++|+++++...+..+.+.++|.+.+.+...
T Consensus 342 --~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 342 --ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred --HhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 233445566678888899999999999999999999999999999988654
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-13 Score=115.78 Aligned_cols=233 Identities=15% Similarity=0.165 Sum_probs=157.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 94 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 94 (436)
+|.+..|++.+........++..++.|.++||+|||+.-+..+++.+++++. -..++++.++++|++.|++....+.+-
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAF 142 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999864 455899999999999999999999888
Q ss_pred hhHh-hhc----CcccchhhHHHHHH-HHHHHHHHHHHHHhhccccccc-cchHHHhhhhHHHHHHHHHHh-cCCCChHH
Q 013779 95 PLYI-AET----CPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMW-SLPPSPRW 166 (436)
Q Consensus 95 ~~~i-~~~----~~~~~r~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~-~w~~~f~~~~~~~~~~~~~~~-~~~es~~~ 166 (436)
-++. .|. +|++..+.-++... ...++-.+.+.+++.++.+... |-..+|.......++..++.. ..+|...
T Consensus 143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg- 221 (354)
T PF05631_consen 143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG- 221 (354)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC-
Confidence 8865 443 23333334344333 2334445666666666665441 347788888877777655544 3444221
Q ss_pred HHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHHHH
Q 013779 167 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 246 (436)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (436)
+++ +..+ ..+.-+..++.+.+||+.+.+-+ ...
T Consensus 222 ----------------------------~~~----~~~~------------~~~~~~~a~~~i~~d~ril~LG~---~qs 254 (354)
T PF05631_consen 222 ----------------------------DTS----SSSS------------LSGSFREAWRAILSDPRILLLGL---IQS 254 (354)
T ss_pred ----------------------------Ccc----cccc------------hHHHHHHHHHHHHcCchhHHHHH---HHH
Confidence 000 0000 00111123455667776654444 333
Q ss_pred HHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013779 247 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 299 (436)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 299 (436)
+.....+..+..|.|.+- ..+.....|++.+.+.++.++|+.+..++..+
T Consensus 255 lFE~smy~FVflWtPaL~---~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 255 LFEGSMYLFVFLWTPALD---PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHHHheeeeeceec---CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444445667888765 22222468999999999999999988766554
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-13 Score=117.65 Aligned_cols=354 Identities=14% Similarity=0.133 Sum_probs=218.0
Q ss_pred ccCcccCccccccchhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 013779 5 QSPELSGTTWFNLSAVQLG-LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 83 (436)
Q Consensus 5 ~~p~i~~~~~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 83 (436)
+.|.+.+ .|.|++..|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+..++.
T Consensus 26 l~~yL~~-~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~y 104 (412)
T PF01770_consen 26 LTPYLTG-PDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFY 104 (412)
T ss_pred chHHHcC-CccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 3444544 33688988875 566677778889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccc-ccchHHHhhhhHHHHHHHHHHhcCCC
Q 013779 84 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSLPP 162 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~e 162 (436)
|++.+ ...+..+++-...|+++..++.+...+..-+|..++.++|-.+.... .+.+...++......+..+..+++|.
T Consensus 105 g~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 105 GLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99987 47788889988899999999999999999999999999998877632 25566666666555566666677777
Q ss_pred ChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhcccc-------ccccccchhhccCCch
Q 013779 163 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD-------EKSEGSFLEVFQGPNL 235 (436)
Q Consensus 163 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 235 (436)
.++-..-++...... ...+.+.++.++..++ + . ..+..++..+ ..-...+++..++|..
T Consensus 184 ~~~S~~f~r~~~~~~----------~~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~l 249 (412)
T PF01770_consen 184 PKRSLFFHRKPPAEQ----------DANESESDKMNESPES-S--S-STEKSPSTESSSRKSVLRLLWKDFKSCYSNPRL 249 (412)
T ss_pred CCcccceeccCcccc----------cccccccccccccccc-c--c-ccccCcccccchHHHHHHHHHHHHHHHhcCchH
Confidence 654222211110000 0000000000000000 0 0 0000000000 1112345556677765
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHhc--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHH
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSA--GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 313 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 313 (436)
+... +.+.....++..+..|...+.++. ..+.....|.+-+...+.+.++.+..|++..+..+..-+..+....
T Consensus 250 l~WS----lWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~ 325 (412)
T PF01770_consen 250 LLWS----LWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSL 325 (412)
T ss_pred HHHH----HHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHH
Confidence 5444 333333334445667777777766 1222245677777777888888888888855555544333333322
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHH
Q 013779 314 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNA 382 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 382 (436)
..+..++... ..++.+.......++.+.+..... +...-++.....+.-|..+|+.+++..+-..
T Consensus 326 l~a~~L~lm~---~t~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQt 390 (412)
T PF01770_consen 326 LQAGLLFLMS---FTGNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQT 390 (412)
T ss_pred HHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHHH
Confidence 2222222221 113455556666666666655444 3334444555667778888887765544433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=126.88 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=124.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 94 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 94 (436)
+|.++.+.+++.+...+...++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.+++.+...+..
T Consensus 247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~ 326 (393)
T PRK15011 247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG 326 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999988888888999999999999999998887776666555555556788888889999988888777777
Q ss_pred hhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCC
Q 013779 95 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 162 (436)
Q Consensus 95 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e 162 (436)
..+..|.+| ++|+++.++.+...++|..+++.+++.+.+.. +|+..|++.+++.++..+..++.||
T Consensus 327 ~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 327 MLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888899887 46999999999999999999999999998877 9999999988888887777766654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-13 Score=120.68 Aligned_cols=178 Identities=20% Similarity=0.173 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHH
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 315 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 315 (436)
+...+...+..|...+......-.+|++-++.+.+. ..++...+.+..+..++.++...+.||++||++++..+.++.+
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~-~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSE-GAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 334444555666665566667788899999999988 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHh
Q 013779 316 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 395 (436)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 395 (436)
+.++..+. .++..+...=+..+..-..+.++..+...++.|+++|+++.++......+...+|.++..++-|..
T Consensus 91 ~n~l~alA------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~ 164 (394)
T COG2814 91 SNLLSALA------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF 164 (394)
T ss_pred HHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 88887763 344444444445555555566677789999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHhheeEecc
Q 013779 396 GAENIFLLFAAIAFLAVLFIVRTVP 420 (436)
Q Consensus 396 g~~~~~~~~~~~~~~~~~~~~~~~~ 420 (436)
||+..|+..+.+.+++.+..+..+|
T Consensus 165 GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 165 GWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999888877777
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=126.44 Aligned_cols=147 Identities=18% Similarity=0.294 Sum_probs=125.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHHHhhhhhhhhhh
Q 013779 18 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----GLGVLLVGRLLYGLGIGLAMHG 93 (436)
Q Consensus 18 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~ 93 (436)
+.++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346779999999999999999999999999999999999999988876666532 3467788899999999988899
Q ss_pred hhhHhhhcCcccchhhHHHHHH-HHHHHHHHHHHHHhhcccccc-----ccchHHHhhhhHHHHHHHHHH-hcCCCCh
Q 013779 94 APLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAV-----GGWRYMYGLSAPLALLMGIGM-WSLPPSP 164 (436)
Q Consensus 94 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~-----~~w~~~f~~~~~~~~~~~~~~-~~~~es~ 164 (436)
...++.|++|+++|+++.++.+ ...++|.++||++++.+.+.. .||+..|.+.+++.++..++. ++++|+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999997 678999999999999988763 169999999888877765554 4566653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=124.63 Aligned_cols=153 Identities=35% Similarity=0.479 Sum_probs=139.2
Q ss_pred cCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHh
Q 013779 6 SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKR-ELIIAAVLYALGALTTAYAPGLGVLLVGRLLYG 84 (436)
Q Consensus 6 ~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 84 (436)
.|.+.++ .+|.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+.....++.+.+.+..++.|
T Consensus 198 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g 276 (352)
T cd06174 198 LPLYLQE-VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLG 276 (352)
T ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444443 24889999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcC
Q 013779 85 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 160 (436)
Q Consensus 85 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 160 (436)
++.+...+...+++.|..|+++|++.+++.+...++|..+++.+.+.+.+.. +|+..+++.+++.++..+..+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 277 FGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcchHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999999999999999999999999999999998877 99999999999888877665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-13 Score=124.47 Aligned_cols=179 Identities=14% Similarity=0.043 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHH
Q 013779 238 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 317 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 317 (436)
.....++.++.............|.+.++.+.+. .+.++..+...++..++.++.|++.||+|||+.+..+..+..++.
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 87 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSA-TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS 87 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 3333444444444444455666676677888876 889999999999999999999999999999999888888777777
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH----
Q 013779 318 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---- 393 (436)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---- 393 (436)
...... ++ ...+...-.+.+.......|....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+
T Consensus 88 ~~~~~~-----~~-~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 88 TATMFA-----TG-PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHh-----cC-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 666542 22 33333333444444444556666788999999999999999999999999999999998874
Q ss_pred --HhCcchhHHHHHHHHHHHHhheeEecccCC
Q 013779 394 --LLGAENIFLLFAAIAFLAVLFIVRTVPETK 423 (436)
Q Consensus 394 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (436)
..||+..|.+.++..++..++.+++.||++
T Consensus 162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 368999999988777766555556666654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=125.16 Aligned_cols=163 Identities=20% Similarity=0.090 Sum_probs=124.8
Q ss_pred hhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchH
Q 013779 254 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 333 (436)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (436)
.......|.+.++.+.++ .+.++......++..++.++.|++.||+|||+.+..+..+..++....... + +..
T Consensus 22 ~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~ 94 (385)
T TIGR00710 22 DMYLPAFPEIAADLSTPA-SIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-----N-NIE 94 (385)
T ss_pred HHhcccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----c-cHH
Confidence 344556677788888877 788999999999999999999999999999999988887777766665432 2 222
Q ss_pred HHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHh
Q 013779 334 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 413 (436)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 413 (436)
.+....+..+.......+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+++.+++.++..+
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 33333333333333344555688899999999999999999999999999999999999999999999888877776666
Q ss_pred heeEecccCC
Q 013779 414 FIVRTVPETK 423 (436)
Q Consensus 414 ~~~~~~~~~~ 423 (436)
......||++
T Consensus 175 ~~~~~~~~~~ 184 (385)
T TIGR00710 175 LIFFILPETL 184 (385)
T ss_pred HHHHhCCCCC
Confidence 5555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-13 Score=123.63 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=122.6
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (436)
.....|.+.++.+.+. .+.++..+...++..++.+..|++.||+|||+.+..+..+..++....... + +...+
T Consensus 28 ~~~~~~~l~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~~l 100 (390)
T PRK03545 28 PVGLLSDIAQSFHMQT-AQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----W-NFTVL 100 (390)
T ss_pred HHcchHHHHhHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----c-cHHHH
Confidence 3345688888888877 788999999988999999999999999999999998888877776665542 2 23333
Q ss_pred HHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhhe
Q 013779 336 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 415 (436)
...-+..+.......+...+++.|.+|+++|+++.|+......+|..++|.+.+.+.+..||+..|++.+++.++..+..
T Consensus 101 ~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 101 LISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344455567889999999999999999999999999999999999999999999999888777665544
Q ss_pred eEeccc
Q 013779 416 VRTVPE 421 (436)
Q Consensus 416 ~~~~~~ 421 (436)
....|+
T Consensus 181 ~~~~~~ 186 (390)
T PRK03545 181 IKLLPL 186 (390)
T ss_pred HHhCCC
Confidence 444444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-13 Score=125.84 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=128.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhh
Q 013779 16 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 95 (436)
Q Consensus 16 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 95 (436)
+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999988998999999999999999999888888888
Q ss_pred hHhhhcCcccchhhHHHH-HHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cCCCC
Q 013779 96 LYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPS 163 (436)
Q Consensus 96 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~es 163 (436)
.++.|.+|++.|+...+. ++....+|.++++.+.+++.+.. |||..|.+.+++.++..++.+ ..+++
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999988877655 67778899999999999999987 899999998888776654443 44443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=126.00 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=123.7
Q ss_pred hhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCch
Q 013779 253 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 332 (436)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (436)
......+.|.+.++.+.+. .+.++......++..++.++.|+++||++||+.+..+..+..++..+.... . +.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~-~~ 105 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDP-VQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA-----T-NV 105 (398)
T ss_pred HHHHHhhHHHHhhccCCCH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc-----c-ch
Confidence 3445667788888888876 788889999999999999999999999999999888877777766555432 2 23
Q ss_pred HHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHH
Q 013779 333 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV 412 (436)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 412 (436)
..+....+..+.......+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..+.+.+++..+..
T Consensus 106 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 185 (398)
T TIGR00895 106 TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185 (398)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHH
Confidence 33333333444444445566678999999999999999999999999999999999999999999998888766655555
Q ss_pred hheeEecccC
Q 013779 413 LFIVRTVPET 422 (436)
Q Consensus 413 ~~~~~~~~~~ 422 (436)
++.....+++
T Consensus 186 ~~~~~~~~~~ 195 (398)
T TIGR00895 186 LLLMRFLPES 195 (398)
T ss_pred HHHHHhCCCC
Confidence 5444445543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-13 Score=125.12 Aligned_cols=153 Identities=23% Similarity=0.197 Sum_probs=130.2
Q ss_pred cCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhh
Q 013779 6 SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGL 85 (436)
Q Consensus 6 ~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 85 (436)
.|.+.++ .|.++.+.+...+...++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+..++.|+
T Consensus 243 ~p~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (406)
T PRK11551 243 LPSLLVG--QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGL 320 (406)
T ss_pred HHHHHHh--CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4556666 78999999999999999999999999999999999999988777777777777777788888888889999
Q ss_pred hhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcC
Q 013779 86 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 160 (436)
Q Consensus 86 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 160 (436)
+.+...+...+++.|.+|+++|++..++.+....+|..++|.+++.+.+...+|...++......++..+..+++
T Consensus 321 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 321 FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999999999999999988875467777776666666555555544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-13 Score=126.24 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=118.5
Q ss_pred hHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
....+.|.+.++.+.+. .+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++.... + +...
T Consensus 41 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~~ 113 (434)
T PRK11663 41 SFNAAMPEMLADLGLSR-SDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-----S-SLWA 113 (434)
T ss_pred hHHHhhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----h-HHHH
Confidence 45677888889988886 788999999999999999999999999999999988888877777655542 1 2222
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHh
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 413 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 413 (436)
+....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|.+.+++.++..+
T Consensus 114 l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 114 FALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 2222222233223334455588899999999999999999999999999999999999999999999888776655443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-13 Score=122.51 Aligned_cols=160 Identities=21% Similarity=0.200 Sum_probs=122.8
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (436)
.....|.+.++.+.++ .+.+...+...++..++.++.|++.||+|||+.+..+..+.+++.+..... + +...+
T Consensus 39 ~~~~l~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~-~~~~l 111 (394)
T PRK10213 39 PVSLLTPMAQDLGISE-GVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-----N-SFSLL 111 (394)
T ss_pred HHhhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----C-hHHHH
Confidence 3345677788888877 788888888999999999999999999999999999888888776665432 2 23333
Q ss_pred HHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhhe
Q 013779 336 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 415 (436)
...-+..+.......+....++.|.+|+++|+++.++......++..++|.+.+.+.+..||+..|++.+++.+++.+..
T Consensus 112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~ 191 (394)
T PRK10213 112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWI 191 (394)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445566668889999999999999999999999999999999999999999999988877666655443
Q ss_pred eEecccC
Q 013779 416 VRTVPET 422 (436)
Q Consensus 416 ~~~~~~~ 422 (436)
....|++
T Consensus 192 ~~~~p~~ 198 (394)
T PRK10213 192 IKSLPSL 198 (394)
T ss_pred HHHCCCC
Confidence 3334443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=125.71 Aligned_cols=142 Identities=21% Similarity=0.221 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhhHhh
Q 013779 20 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 99 (436)
Q Consensus 20 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 99 (436)
++.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 328 (399)
T PRK05122 249 DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAV 328 (399)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999998888888888888888888889999999999988888888888
Q ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCC
Q 013779 100 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 162 (436)
Q Consensus 100 ~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e 162 (436)
|..|+++|+++.++.+....+|..+++.+.+.+.+.. ||+..|++.+...++..+..+++++
T Consensus 329 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 329 KRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999988877 8999999988888877666555544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.7e-13 Score=121.57 Aligned_cols=158 Identities=12% Similarity=0.040 Sum_probs=116.1
Q ss_pred hHHhchHHHHH-hcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchH
Q 013779 255 SVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 333 (436)
Q Consensus 255 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (436)
....+.|.+++ +.|.+. .+.++..+...+..++..++.|+++||+|||+.+..+.....++...+... ++.+.
T Consensus 25 ~~~~~l~~~l~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-----~~~~~ 98 (395)
T PRK10054 25 ATLPFMTIYLSRQYSLSV-DLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-----NNVTL 98 (395)
T ss_pred HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----hHHHH
Confidence 45556666665 567776 889999999999999999999999999999999888877776666555432 12222
Q ss_pred HHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHh
Q 013779 334 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 413 (436)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 413 (436)
.+....+. +.......+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .||+..|...+++.++..+
T Consensus 99 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i 176 (395)
T PRK10054 99 VVLFFALI-NCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLV 176 (395)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHH
Confidence 22222222 222223445566888899999999999999999999999999999998875 6899999988877776655
Q ss_pred heeEecc
Q 013779 414 FIVRTVP 420 (436)
Q Consensus 414 ~~~~~~~ 420 (436)
+..+..+
T Consensus 177 ~~~~~~~ 183 (395)
T PRK10054 177 FIQIWVQ 183 (395)
T ss_pred HHHHHHh
Confidence 4433333
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=124.91 Aligned_cols=144 Identities=18% Similarity=0.189 Sum_probs=124.9
Q ss_pred CcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhH--HHHHHHHHHHh
Q 013779 7 PELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL--GVLLVGRLLYG 84 (436)
Q Consensus 7 p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G 84 (436)
|.+.++ +|.++.+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++. ..+....++.|
T Consensus 229 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 229 KPYGQS--LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 334455 78899999999999999999999999999999999999999999888888877776643 34556678888
Q ss_pred hhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHH
Q 013779 85 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 153 (436)
Q Consensus 85 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~ 153 (436)
++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.. ||++.|++.+++.++.
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GFEYTFIVTGAFALTS 374 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHh
Confidence 8888888888889999999999999999999999999999999999988877 8999999888776654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.3e-13 Score=122.56 Aligned_cols=160 Identities=17% Similarity=0.118 Sum_probs=125.4
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (436)
+....|.+.++.+.+. .+.++..+...++..++.++.|++.||+|||+.+..+..+..++....... . +...+
T Consensus 13 ~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~~~ 85 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSA-AQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----G-AYVSL 85 (399)
T ss_pred hhHhHHHHHHhhCCCh-hhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----c-CHHHH
Confidence 4556677777888876 788999999999999999999999999999999998888777776665542 2 33333
Q ss_pred HHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhhe
Q 013779 336 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 415 (436)
.......+.......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..|...+++.++..+..
T Consensus 86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (399)
T TIGR00893 86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLW 165 (399)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Confidence 33333444444445566668999999999999999999999999999999999999999999999998888777766655
Q ss_pred eEecccC
Q 013779 416 VRTVPET 422 (436)
Q Consensus 416 ~~~~~~~ 422 (436)
....+++
T Consensus 166 ~~~~~~~ 172 (399)
T TIGR00893 166 LKFIPDP 172 (399)
T ss_pred hheecCC
Confidence 5545443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=120.56 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=126.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 94 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 94 (436)
+|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+......+.++.+.+.+.+++.|++.+...+..
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 309 (375)
T TIGR00899 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG 309 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999888888888899999999999999999988877766666666667788888889999999999888888
Q ss_pred hhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCC
Q 013779 95 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 162 (436)
Q Consensus 95 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e 162 (436)
..++.|..|+ +++++.++.+...++|..++|.+++.+.+.. +|+..|++.++..++..+...+++|
T Consensus 310 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 310 MLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW-SYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHheecC
Confidence 8999998865 5679999999999999999999999988877 8999999998888877776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=120.81 Aligned_cols=184 Identities=15% Similarity=0.023 Sum_probs=130.1
Q ss_pred chhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccE
Q 013779 226 FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 305 (436)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 305 (436)
++.+.+++.++...+...+..+... ......|.+.++.+.+. .+.++......++..++.++.|+++||++||+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~-~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~ 84 (417)
T PRK10489 10 LSLLKTHPAFRAVFIARFISIFGLG----LLGVAVPVQIQMMTGST-LQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL 84 (417)
T ss_pred HHHHHhCCChhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE
Confidence 3445567777766655444444332 45666777788877765 789999999999999999999999999999999
Q ss_pred eehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHH
Q 013779 306 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 385 (436)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 385 (436)
+..+..+.+++...+...... ..+....+....+..+.......+....++.|..|+++|+++.++.+....+|..++|
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 163 (417)
T PRK10489 85 ILLARGTCGLGFIGLALNAFL-PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP 163 (417)
T ss_pred EEehHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH
Confidence 998877766665554322111 1222333333333333322223344457788999999999999999999999999999
Q ss_pred HhhHHHHHHhCcchhHHHHHHHHHHHHhhe
Q 013779 386 FAFSPLKELLGAENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 386 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 415 (436)
.+.+.+.+..+|++.+++.++..+++.++.
T Consensus 164 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 164 ALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999998899888887776666555443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.3e-13 Score=125.60 Aligned_cols=148 Identities=14% Similarity=0.164 Sum_probs=123.9
Q ss_pred cCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHH--HHHHHHHHHHHHhccchhHHHHHHHHH
Q 013779 6 SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF--LGRKRELI--IAAVLYALGALTTAYAPGLGVLLVGRL 81 (436)
Q Consensus 6 ~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr--~Grr~~l~--~~~~~~~~~~~~~~~~~~~~~l~~~r~ 81 (436)
+|.+.++ +|.+..+.+++.+...++..++.++.|+++|| +++|+... .+.++.+++.+++...++++.+++.++
T Consensus 264 l~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~ 341 (455)
T TIGR00892 264 LVPYAKD--KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCI 341 (455)
T ss_pred HHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 3555555 79999999999999999999999999999997 33444333 344444555666677788999999999
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHH
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 155 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~ 155 (436)
+.|++.+...+...+++.|.+|++++++..++.+...++|.++||.+++.+.+...+|+..|++.++..++..+
T Consensus 342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988765699999998887666544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.3e-13 Score=115.76 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=136.2
Q ss_pred hHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
.+..-.|.+.++.+++. .+.+.+.+.+.+..-++.++.|.++||.+.|+.+..++++.++..+++... +....
T Consensus 47 nF~~a~p~l~e~~~lsk-~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs------~s~~~ 119 (448)
T COG2271 47 NFNLAMPALIEDGGLSK-TQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS------PSLFL 119 (448)
T ss_pred hHhhccHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh------hHHHH
Confidence 35566688888887776 899999999999999999999999999999999999999999999998864 24455
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhh--HHHHHHhCcchhHHHHHHHHHHHH
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF--SPLKELLGAENIFLLFAAIAFLAV 412 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~ 412 (436)
+.++....+.+...-.|.....+..-+|+++||+..++.|+..++|+.+.|.+. +.+.++.+|+..|++-++++++.+
T Consensus 120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiva 199 (448)
T COG2271 120 FAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA 199 (448)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 555666666665555555558888899999999999999999999999999999 888888899999999999999888
Q ss_pred hheeEecccC
Q 013779 413 LFIVRTVPET 422 (436)
Q Consensus 413 ~~~~~~~~~~ 422 (436)
++.++..+++
T Consensus 200 l~~~~~~rd~ 209 (448)
T COG2271 200 LILLFLLRDR 209 (448)
T ss_pred HHHHHHhCCC
Confidence 8777666554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=121.12 Aligned_cols=170 Identities=16% Similarity=0.073 Sum_probs=125.1
Q ss_pred HHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHH
Q 013779 247 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKI 326 (436)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (436)
.....+........|.+.++.+.+. .+.+...+...++..++.++.|+++||+|||+.+..+.....++.......
T Consensus 13 ~~~~~~~~~~~~~lp~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~--- 88 (392)
T PRK10473 13 LLYPAGIDMYLVGLPRIAADLNASE-AQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA--- 88 (392)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh---
Confidence 3333344455667888888888876 778888899999999999999999999999999888877777766655431
Q ss_pred HcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHH
Q 013779 327 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAA 406 (436)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 406 (436)
++.+..+. .....+.......+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..+++.++
T Consensus 89 --~~~~~~~~-~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~ 165 (392)
T PRK10473 89 --ETSSLFLA-GRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAA 165 (392)
T ss_pred --CcHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHH
Confidence 22222222 222333333333445568889999999999999999999999999999999888888899998888887
Q ss_pred HHHHHHhheeEecccCC
Q 013779 407 IAFLAVLFIVRTVPETK 423 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~~ 423 (436)
+.++..++.....+|++
T Consensus 166 ~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 166 MGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77766665544455543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=121.98 Aligned_cols=150 Identities=17% Similarity=0.070 Sum_probs=115.2
Q ss_pred cCcc-cCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH--HhccchhHHHHHHHHHH
Q 013779 6 SPEL-SGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGAL--TTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 6 ~p~i-~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~r~l 82 (436)
+|.+ +++ +|.|..+.++..+...++..++.+++|+++||+|||+.+.....+..++.. .....++.+...+.+++
T Consensus 281 ~p~yl~~~--~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (467)
T PRK09556 281 SPVYAFQE--LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA 358 (467)
T ss_pred HHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4543 345 899999999999999999999999999999999999887665444443332 22334566677788888
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHH-HHHHHHHHhhcccc------------ccccchHHHhhhhHH
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQIN------------AVGGWRYMYGLSAPL 149 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~l~~~l~~~l~~------------~~~~w~~~f~~~~~~ 149 (436)
.|++.............|.+|+++|+.+.|+.+...++ |..++|.+.|.+.+ .. +|+..|++..+.
T Consensus 359 ~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~-~~~~~f~~~~~~ 437 (467)
T PRK09556 359 LGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT-GWAGTFAALDIA 437 (467)
T ss_pred HHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccccc-ChHHHHHHHHHH
Confidence 88654434334446677999999999999999988886 77999999999888 34 799999988777
Q ss_pred HHHHHHHHh
Q 013779 150 ALLMGIGMW 158 (436)
Q Consensus 150 ~~~~~~~~~ 158 (436)
.++..+..+
T Consensus 438 ~~~~~~~~~ 446 (467)
T PRK09556 438 AIGCICLMA 446 (467)
T ss_pred HHHHHHHHH
Confidence 776655544
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.7e-13 Score=127.23 Aligned_cols=169 Identities=18% Similarity=0.144 Sum_probs=130.1
Q ss_pred HHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHH
Q 013779 247 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKI 326 (436)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (436)
+.............|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 12 ~~~~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--- 87 (485)
T TIGR00711 12 FMAVLDSTIVNVAIPTIAGDLGSSL-SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--- 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCh-hhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc---
Confidence 3333333456677888888888876 788899999999999999999999999999999988888877776665532
Q ss_pred HcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHH
Q 013779 327 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAA 406 (436)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 406 (436)
.+...+.......+.......+...+++.|.+|+++|+++.++......+|..++|.+.+.+.+..||++.|++.+.
T Consensus 88 ---~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~ 164 (485)
T TIGR00711 88 ---PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVP 164 (485)
T ss_pred ---CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhH
Confidence 23333334444444444455566678999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHhheeEecccC
Q 013779 407 IAFLAVLFIVRTVPET 422 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~ 422 (436)
+.++..++..+..+++
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 165 IGIIVVVVAFFILPRD 180 (485)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 7666655444444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-12 Score=118.50 Aligned_cols=179 Identities=13% Similarity=0.068 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHH
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 315 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 315 (436)
++......+..+.............|.+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTT-VDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA 89 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444444444444456667777778888877 7889999999999999999999999999999998888777777
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHh
Q 013779 316 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 395 (436)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 395 (436)
+.+..... + +...+....+..+.......+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..
T Consensus 90 ~~~~~~~~-----~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 163 (405)
T TIGR00891 90 GTLACGFA-----P-GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW 163 (405)
T ss_pred HHHHHHHh-----c-cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66655432 2 23333333344444444444556688899999999999999999999999999999999988877
Q ss_pred C--cchhHHHHHHHHHHHHhheeEecccC
Q 013779 396 G--AENIFLLFAAIAFLAVLFIVRTVPET 422 (436)
Q Consensus 396 g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (436)
+ |+..|.+.++..++... .....||+
T Consensus 164 ~~~w~~~f~~~~~~~~~~~~-~~~~~~~~ 191 (405)
T TIGR00891 164 GDGWRALFFISILPIIFALW-LRKNIPEA 191 (405)
T ss_pred CccHHHHHHHHHHHHHHHHH-HHHhCCCC
Confidence 6 88888765554444333 23334543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.8e-13 Score=122.17 Aligned_cols=137 Identities=21% Similarity=0.204 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhh
Q 013779 21 QLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAE 100 (436)
Q Consensus 21 ~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 100 (436)
+.++..+.+.++..+++++.|++.||+||||.+..+..+.+++.++..+.++.+.+.+.+++.|++.+...+...+.+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 329 (392)
T PRK12382 250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK 329 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35666777888889999999999999999999999999998888888888888888899999999999888888888999
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh
Q 013779 101 TCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 158 (436)
Q Consensus 101 ~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~ 158 (436)
.+|+++|+++.++.+....+|..++|.+.+.+.+.. ||+..|.+.+.+.++..+..+
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 330 RVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887 999999998888777665554
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-13 Score=120.27 Aligned_cols=152 Identities=20% Similarity=0.169 Sum_probs=120.8
Q ss_pred HHhchH-HHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 256 VLYYAG-PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 256 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
.....| .+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.....+. ++.+ .
T Consensus 15 ~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~-~ 87 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSP-SQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----SNFW-L 87 (352)
T ss_dssp HHHHHH-HHHCCSTTTS-HCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----CCHH-H
T ss_pred HHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----hhHH-H
Confidence 444556 5556677776 789999999999999999999999999999998888888888874443321 2333 4
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhh
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 414 (436)
+....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..|++.+++.++..++
T Consensus 88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 44444455555455566777899999999999999999999999999999999999998889999999999988888764
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=118.98 Aligned_cols=162 Identities=14% Similarity=0.037 Sum_probs=123.3
Q ss_pred hHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
......|.+.++.|.+. .+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.++.... ++ ...
T Consensus 21 ~~~~~l~~~~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-----~~-~~~ 93 (382)
T PRK10091 21 GIMGVLTELAHDVGISI-PAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-----SS-YLM 93 (382)
T ss_pred HHHhChHHHHHHcCCCH-HHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-----Cc-HHH
Confidence 45567788888888876 778999999999999999999999999999999998888888777665532 23 333
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhh
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 414 (436)
+...-.+.+.......+.......|.+|+++|+++.+.......++..++|.+.+.+.+..||+..|.+.+++.++..+.
T Consensus 94 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 94 LAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334445678888998999999999998899999999999999999899999999888877666554
Q ss_pred eeEecccCC
Q 013779 415 IVRTVPETK 423 (436)
Q Consensus 415 ~~~~~~~~~ 423 (436)
.....|+.+
T Consensus 174 ~~~~lp~~~ 182 (382)
T PRK10091 174 IYFWVPDIR 182 (382)
T ss_pred HHHhCCCCC
Confidence 444455543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=123.34 Aligned_cols=178 Identities=15% Similarity=0.060 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHH
Q 013779 238 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 317 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 317 (436)
.+....+..+....-.+.+..-.|.+.++.+.+. .+.++....+.++.....+..|+++||+|||+.+..+..+..++.
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~-~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~ 85 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASG-NELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLAS 85 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3444444444444444567777899888888776 678889889999999999999999999999999999988888887
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhcccc-CCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC
Q 013779 318 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI-FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 396 (436)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 396 (436)
+..... ++.+. +...-.+.+.......+.....+.+. .|+++|+++.|+......+|..++|.+.+.+.+..|
T Consensus 86 ~~~~~a-----~~~~~-li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 86 LAAAFS-----PTASW-LIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHHc-----CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 776542 23333 33332333333333444443445454 477899999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhheeEecccC
Q 013779 397 AENIFLLFAAIAFLAVLFIVRTVPET 422 (436)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (436)
|++.|++...+.++..++.....|+.
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999988777776665555555554
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-12 Score=117.96 Aligned_cols=159 Identities=18% Similarity=0.055 Sum_probs=120.5
Q ss_pred hHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
......|.+..+.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+..++.......... +..+...
T Consensus 17 ~~~~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 94 (365)
T TIGR00900 17 ITQVALPLYVLAGTGSA-SVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL-GGLNIWQ 94 (365)
T ss_pred HHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc-CCCcHHH
Confidence 34455666777777766 788999999999999999999999999999999888877777666655543211 1113333
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhh
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 414 (436)
+.......+.......+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..++..++..+++.+.
T Consensus 95 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 95 VYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333344444444556667899999999999999999999999999999999999999999999988877766655443
Q ss_pred e
Q 013779 415 I 415 (436)
Q Consensus 415 ~ 415 (436)
.
T Consensus 175 ~ 175 (365)
T TIGR00900 175 I 175 (365)
T ss_pred H
Confidence 3
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-12 Score=118.26 Aligned_cols=149 Identities=14% Similarity=0.131 Sum_probs=124.3
Q ss_pred cCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhh
Q 013779 6 SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGL 85 (436)
Q Consensus 6 ~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 85 (436)
+|.+.++ .|.+.++.++..+...++..+++++.|++.||+|+|+++..+..+.+++.+... . .......+++.|+
T Consensus 223 lp~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~ 297 (381)
T PRK03633 223 MPLYLNH--QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA 297 (381)
T ss_pred HHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence 4666665 689999999999999999999999999999999999999888888777665543 2 2344457788888
Q ss_pred hhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcC
Q 013779 86 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 160 (436)
Q Consensus 86 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 160 (436)
+.....|...+.+.|..|+++++...+......++|.++||.+++++.++. +|++.|++.+.+.++..+..++.
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHhc
Confidence 877888999999999998888888888888899999999999999998887 89999999888887666555543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-12 Score=117.08 Aligned_cols=155 Identities=11% Similarity=0.071 Sum_probs=114.5
Q ss_pred hhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCch
Q 013779 253 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 332 (436)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (436)
........|.+.++.+.+. .+.+...+...++..++.++.|++.||+|||+.+..+..+..++..+.... + +.
T Consensus 23 ~~~~g~~~~~i~~~~~~s~-~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~-----~-~~ 95 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNLPV-SSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS-----H-SL 95 (394)
T ss_pred HHHHhhhhHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-----c-hH
Confidence 3445566788888888876 788888899999999999999999999999999888777777666655432 2 22
Q ss_pred HHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH-HhCcchhHHHHHHHHHHH
Q 013779 333 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-LLGAENIFLLFAAIAFLA 411 (436)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~ 411 (436)
..+.......+.......+....++.|.+|+++|+.+.+..+....+++.++|.+.+.+.+ ..||+..|...+++.++.
T Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~ 175 (394)
T PRK03699 96 ALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAI 175 (394)
T ss_pred HHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 2232232333333333334455788899999999999999888888899999999888765 568999998877776655
Q ss_pred Hhh
Q 013779 412 VLF 414 (436)
Q Consensus 412 ~~~ 414 (436)
.++
T Consensus 176 ~~~ 178 (394)
T PRK03699 176 FIL 178 (394)
T ss_pred HHH
Confidence 443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-12 Score=118.33 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=119.0
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (436)
...-+|.+.++.+.+. ...+...+.+.++..++.++.|+++||+|||+++..+..+..++...... .++...+
T Consensus 35 ~~p~l~~i~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~------a~~~~~l 107 (413)
T PRK15403 35 IQPGIINVVRDFNADV-SLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF------TTSMTQF 107 (413)
T ss_pred hccCHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH------cCCHHHH
Confidence 3334455667777766 77888888888999999999999999999999988887777766655543 1233233
Q ss_pred HHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhhe
Q 013779 336 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 415 (436)
...-+..+.......+....+..|.+|+++++++.++.+....++..++|.+.+.+.+..||+..|++.+++.+++.+..
T Consensus 108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 33333333332233344557788999999999999999999999999999999999988899999999888877776554
Q ss_pred eEecccCC
Q 013779 416 VRTVPETK 423 (436)
Q Consensus 416 ~~~~~~~~ 423 (436)
.+..||++
T Consensus 188 ~~~lp~~~ 195 (413)
T PRK15403 188 LLAMPETV 195 (413)
T ss_pred HHhCCCCc
Confidence 44456643
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-12 Score=121.03 Aligned_cols=168 Identities=18% Similarity=0.126 Sum_probs=124.5
Q ss_pred HHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHH
Q 013779 247 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKI 326 (436)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (436)
+...........+.|.+.++.|.+. .+.++......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 20 ~~~~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--- 95 (471)
T PRK10504 20 FMQSLDTTIVNTALPSMAQSLGESP-LHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--- 95 (471)
T ss_pred HHHHHhHHHHHHHHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh---
Confidence 3333333456678899999988887 677888888888889999999999999999999887776666665543321
Q ss_pred HcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHH
Q 013779 327 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAA 406 (436)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 406 (436)
. +...+.......+.......|...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||++.|.+...
T Consensus 96 --~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~ 172 (471)
T PRK10504 96 --G-TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIP 172 (471)
T ss_pred --C-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHH
Confidence 2 2223333333444444444556668889999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHhheeEeccc
Q 013779 407 IAFLAVLFIVRTVPE 421 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~ 421 (436)
+..++.+......++
T Consensus 173 ~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 173 VGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHhCCC
Confidence 666665544443333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-12 Score=116.97 Aligned_cols=147 Identities=14% Similarity=0.032 Sum_probs=130.9
Q ss_pred CcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhh
Q 013779 7 PELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 86 (436)
Q Consensus 7 p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 86 (436)
|...+| +|.++.+.|.+.+...++..++.++.+++.||+|+|+.+.++.+..++..++.+++++.+.+++.++++|+.
T Consensus 229 ~~~l~~--~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~ 306 (382)
T TIGR00902 229 AIYWQA--AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGT 306 (382)
T ss_pred HHHHHH--CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 444455 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHhhhcCcccchhhHHHHHH-HHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh
Q 013779 87 IGLAMHGAPLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 158 (436)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~ 158 (436)
.+...+....++.+. |+++|++..++++ ...++|.++++.++|++.+.. ++ ..|++.+.++++..++..
T Consensus 307 ~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 307 FAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-GA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999998 9999999999976 578899999999999999988 76 667777777776554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=117.91 Aligned_cols=182 Identities=18% Similarity=0.173 Sum_probs=128.6
Q ss_pred hhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHH
Q 013779 235 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 314 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 314 (436)
.+...+...+..+........+....|.+.++.+.+. .+.+.......++..++.++.|+++||+|||+.+..+.....
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 89 (406)
T PRK15402 11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGA-EWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFI 89 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3444444444444444334445555677778888876 778888889999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 013779 315 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 394 (436)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 394 (436)
++....... ++.+. +.......+.......+.....+.|.+|+++|+++.++......++..++|.+.+.+.+.
T Consensus 90 ~~~~~~~~~-----~~~~~-l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 163 (406)
T PRK15402 90 LTCLAILLA-----QSIEQ-FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV 163 (406)
T ss_pred HHHHHHHHH-----ccHHH-HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666654432 22222 222333333333333445567788999999999999998888888999999999999998
Q ss_pred hCcchhHHHHHHHHHHHHhheeEecccCC
Q 013779 395 LGAENIFLLFAAIAFLAVLFIVRTVPETK 423 (436)
Q Consensus 395 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (436)
.+|+..+++.+++.+++.+..+...||++
T Consensus 164 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 164 LPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 89999998888877776655444455543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.6e-12 Score=118.86 Aligned_cols=156 Identities=10% Similarity=0.014 Sum_probs=109.3
Q ss_pred hHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
....+.|.+.++.+.+. .+.+.......++..++.++.|+++||+|||+.+..+.....++.++.... .+...
T Consensus 54 ~~~~~~~~l~~~~gls~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~s~~~- 126 (476)
T PLN00028 54 AAAPLLPIIRDNLNLTK-SDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-----SSATG- 126 (476)
T ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----cCHHH-
Confidence 45556777888888876 677888888888899999999999999999998877776666665544432 22222
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH---------HhCcchhHHHHH
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---------LLGAENIFLLFA 405 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---------~~g~~~~~~~~~ 405 (436)
+....+..+.......+ ...++.|.+|+++|+++.|+.+...++|..+++.+.+.+.+ ..||+..|.+.+
T Consensus 127 l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g 205 (476)
T PLN00028 127 FIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG 205 (476)
T ss_pred HHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 22222233332323333 33567899999999999999988888888888776655432 247999999888
Q ss_pred HHHHHHHhheeEe
Q 013779 406 AIAFLAVLFIVRT 418 (436)
Q Consensus 406 ~~~~~~~~~~~~~ 418 (436)
++.++..++..++
T Consensus 206 ~l~l~~~l~~~~~ 218 (476)
T PLN00028 206 LLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHH
Confidence 8777665544433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.7e-13 Score=126.27 Aligned_cols=145 Identities=13% Similarity=0.053 Sum_probs=114.6
Q ss_pred ccCcccC-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHH
Q 013779 5 QSPELSG-TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA--PGLGVLLVGRL 81 (436)
Q Consensus 5 ~~p~i~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~ 81 (436)
.+|.+.+ + +|.+..+.+++.+...++..++.++.|+++||+|||+++..+..+..+..+..... .+.+.+.+..+
T Consensus 297 ~lp~~l~~~--~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (496)
T PRK03893 297 LLPTYLKTD--LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF 374 (496)
T ss_pred HHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3455553 5 89999999999999999999999999999999999999888877766665544332 34444555555
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHH
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL 152 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~ 152 (436)
+.+.......+...+++.|.+|+++|++++++......+|..+||.+++.+.+.. ||+..+...+....+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~-g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL-DLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHH
Confidence 5554444455677788999999999999999999999999999999999999887 899887665544433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.6e-12 Score=118.96 Aligned_cols=155 Identities=17% Similarity=0.089 Sum_probs=117.7
Q ss_pred ChhhHHhchHHHHHh---cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEeehhhHHHHHHHHHHHHHHHHH
Q 013779 252 GQPSVLYYAGPILQS---AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKIL 327 (436)
Q Consensus 252 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (436)
+++....++|.++++ .|.+. .+.+.......+...++.+++|+++|| +|||+.+..+..+.+++..++...
T Consensus 25 ~~~~~~~~L~~yl~~~~~lg~s~-~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~---- 99 (475)
T TIGR00924 25 SYYGMQGILAVYLVQQAGLGFSQ-EQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS---- 99 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc----
Confidence 344566778888765 56665 789999999999999999999999999 899999999998888877766542
Q ss_pred cCCchHHHHHHHHHHHHhhcccccccchhccccCCccc---cchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHH
Q 013779 328 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT---RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLF 404 (436)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~ 404 (436)
++.+.... ...+.+.......|...++++|.+|+++ |+++.++.+...++|..++|.+.+.+.+..||+..|...
T Consensus 100 -~~~~~~~~-~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 100 -IYPDLIFY-GLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred -ccHhHHHH-HHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 22222222 2223333334445566688888888654 888999999999999999999999999999999999887
Q ss_pred HHHHHHHHh
Q 013779 405 AAIAFLAVL 413 (436)
Q Consensus 405 ~~~~~~~~~ 413 (436)
++..+++.+
T Consensus 178 ~~~~~~~~l 186 (475)
T TIGR00924 178 AVGMVIGLL 186 (475)
T ss_pred HHHHHHHHH
Confidence 765555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-12 Score=116.72 Aligned_cols=160 Identities=15% Similarity=0.105 Sum_probs=117.6
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (436)
.....|.+.++.+.++ .+.++......++..++.++.|+++||+|||+.+..+.....++.+..... + +...+
T Consensus 27 ~~p~~~~i~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~-~~~~l 99 (394)
T PRK11652 27 YVPAIADMARDLNVRE-GAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----H-SLTVL 99 (394)
T ss_pred HhccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----c-cHHHH
Confidence 4445677788888887 788999999999999999999999999999999888877776666554431 2 22223
Q ss_pred HHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhhe
Q 013779 336 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 415 (436)
....+..+.......+....+..|.+++++++.+.+..+....++..++|.+.+.+.+..||+..|.+.++..++..+..
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 100 IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 33333333332233344556777888888999999999999999999999999999998899999988777666554444
Q ss_pred eEecccC
Q 013779 416 VRTVPET 422 (436)
Q Consensus 416 ~~~~~~~ 422 (436)
....||+
T Consensus 180 ~~~~~~~ 186 (394)
T PRK11652 180 ARWMPET 186 (394)
T ss_pred HHhCCcc
Confidence 4445554
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=119.08 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=122.5
Q ss_pred hHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
......|.+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++.... . +...
T Consensus 13 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~~ 85 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSK-TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----T-SLWV 85 (379)
T ss_pred hhhhhhHHHHHHhCCCH-hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----h-hHHH
Confidence 45556677777788877 788999999999999999999999999999999998888887777766543 2 2333
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHH-HhhHHHHHHhCcchhHHHHHHHHHHHHh
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT-FAFSPLKELLGAENIFLLFAAIAFLAVL 413 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 413 (436)
+....+..+.......+...+++.|.+|+++|+++.++.+....+|..++| .+.+.+.+..+|+..|++.+++.++..+
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSL 165 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 333334444444455566778999999999999999999999999999999 4666666778899988888877766655
Q ss_pred heeEeccc
Q 013779 414 FIVRTVPE 421 (436)
Q Consensus 414 ~~~~~~~~ 421 (436)
+.....++
T Consensus 166 ~~~~~~~~ 173 (379)
T TIGR00881 166 ICFLLLRD 173 (379)
T ss_pred HHheeeCC
Confidence 55555544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-13 Score=118.14 Aligned_cols=183 Identities=14% Similarity=0.071 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHH
Q 013779 239 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 318 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 318 (436)
.....+....+..--+.+..-.+..-+..+.++ ...+++...+.+...+.+++.|++.||++|++++..+..+..++.+
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~-s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~ 113 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISD-SELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVF 113 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCc-hhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHH
Confidence 333344444444433444444455445566666 7889999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC-c
Q 013779 319 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-A 397 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~ 397 (436)
.-... ...+.+.++=.+.+.....+.|+..++++|.+|.++|++++++.+.+...|..+|-.+.+.+.+..+ |
T Consensus 114 ~~~fs------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 114 ASGFS------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHH------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 77653 3455555566666777778889999999999999999999999999999999988888888887777 9
Q ss_pred chhHHHHHHHHHHHHhheeEecccCCCCCHH
Q 013779 398 ENIFLLFAAIAFLAVLFIVRTVPETKGLSLE 428 (436)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (436)
++.|...+++.++.+++..++.+|.+++..+
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCccccccc
Confidence 9999999999999998888887776654333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-12 Score=118.83 Aligned_cols=137 Identities=21% Similarity=0.298 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhh
Q 013779 21 QLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAE 100 (436)
Q Consensus 21 ~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 100 (436)
..+.+.+...++..++.+..|+++||+|||+.+..+....+++.+...+.++.+.+.+.+++.|++.+...|...+.+.+
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 35666777788889999999999999999999999988888888877777888899999999999999999999999999
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh
Q 013779 101 TCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 158 (436)
Q Consensus 101 ~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~ 158 (436)
..|+++|++.+++.+....+|..+||.+++.+.+.. +|+..|++.+++.++..+..+
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887 899999999888887766554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=114.93 Aligned_cols=158 Identities=17% Similarity=0.130 Sum_probs=117.9
Q ss_pred HHhchHHHH-HhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 256 VLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 256 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
...+.+.++ ++.+.+. .+.++......+...+..++.|+++||++||+.+..+..+..++....... ++.+..
T Consensus 29 ~~~~~~~~~~~~~g~s~-~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-----~~~~~l 102 (400)
T PRK11646 29 VFPLISIRFVDQLGWAA-VMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-----HEPWLL 102 (400)
T ss_pred HHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-----ccHHHH
Confidence 444555555 5567776 889999999889999999999999999999999988888888877766532 223333
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhh
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 414 (436)
.......+.......|...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+. ..||+..|++.+.+.++..++
T Consensus 103 -~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 103 -WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 333333333333444555678889999999999999999999999999999999998 678999888887776665544
Q ss_pred eeEeccc
Q 013779 415 IVRTVPE 421 (436)
Q Consensus 415 ~~~~~~~ 421 (436)
.....++
T Consensus 181 ~~~~~~~ 187 (400)
T PRK11646 181 NAWLLPA 187 (400)
T ss_pred HHHhCCc
Confidence 3333444
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=114.73 Aligned_cols=156 Identities=16% Similarity=0.065 Sum_probs=113.6
Q ss_pred hhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCccEeehhhHHHHHHHHHHHHHHHHHcCC
Q 013779 253 QPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKILGGF 330 (436)
Q Consensus 253 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (436)
++....++|.++.+ .|.+. .+++...........++.+++|+++||+ |||+.+..+..+..++.+++... ...
T Consensus 25 ~Yg~~~~L~~yL~~~lgls~-~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----~~~ 99 (493)
T PRK15462 25 FYGMRALLILYLTNQLKYDD-NHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----EIH 99 (493)
T ss_pred HHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----hcc
Confidence 34466677877765 57766 7788888888888899999999999998 99999988888888776654421 111
Q ss_pred chHHHHHHHHHHHHhhcccccccchhccccCCcc--ccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHH
Q 013779 331 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR--TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIA 408 (436)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 408 (436)
.........+...+ .....+...+++.|.+|++ .|.++.++.+...++|+.++|.+.+++.+..||+..|...++..
T Consensus 100 ~~~~~l~l~li~iG-~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm 178 (493)
T PRK15462 100 PSFLYLSLAIIVCG-YGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM 178 (493)
T ss_pred hhHHHHHHHHHHHh-cccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 12222222222222 2233344558899999976 69999999999999999999999999999999999998876655
Q ss_pred HHHHhh
Q 013779 409 FLAVLF 414 (436)
Q Consensus 409 ~~~~~~ 414 (436)
+++.+.
T Consensus 179 ~l~li~ 184 (493)
T PRK15462 179 IAGLVI 184 (493)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-12 Score=116.55 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=122.8
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (436)
.....|.+.++.+.++ .+.+...+...++..++.++.|++.||+|||+.+..+..+..++....... ++.+ .+
T Consensus 10 ~~p~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----~~~~-~~ 82 (377)
T PRK11102 10 YLPALPVIAADFGVSA-GSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----QTID-QL 82 (377)
T ss_pred HhccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----ccHH-HH
Confidence 4456677788888876 788999999999999999999999999999999888888777777666532 2222 23
Q ss_pred HHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhhe
Q 013779 336 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 415 (436)
.......+.......+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..|++.+.+.++..++.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 33333333333344455568889999999999999999999999999999999999999999999988887777765554
Q ss_pred eEecccC
Q 013779 416 VRTVPET 422 (436)
Q Consensus 416 ~~~~~~~ 422 (436)
....+|+
T Consensus 163 ~~~~~~~ 169 (377)
T PRK11102 163 FFFIPET 169 (377)
T ss_pred HHhCCcc
Confidence 4445543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.6e-12 Score=113.96 Aligned_cols=160 Identities=14% Similarity=0.040 Sum_probs=114.8
Q ss_pred hHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
.+....|.+.++.+.+. .+.++..+.+.++..++.+..|+++||+|||+.+.........+. .... . ..+...
T Consensus 9 ~~~~~lp~i~~~~~~s~-~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~----~-~~~~~~ 81 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSK-EELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLL----D-PFNYEW 81 (368)
T ss_pred HHHhhHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHH----H-hccHHH
Confidence 35567788888888887 788999999999999999999999999998886543333332221 1111 1 112333
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhh
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 414 (436)
+...-+..+...... +.......|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..|.+.+++.++..++
T Consensus 82 l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 82 LLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 333333333322222 2333556888999999999999999999999999999999999999999999988887777666
Q ss_pred eeEecccC
Q 013779 415 IVRTVPET 422 (436)
Q Consensus 415 ~~~~~~~~ 422 (436)
.+...||.
T Consensus 161 ~~~~lp~~ 168 (368)
T TIGR00903 161 VLAALPAL 168 (368)
T ss_pred HHHHcCCC
Confidence 66666664
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-11 Score=112.71 Aligned_cols=152 Identities=19% Similarity=0.105 Sum_probs=111.9
Q ss_pred chHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 013779 259 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL 338 (436)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (436)
..|.+.++.+.++ .+.+...+...++..++.++.|+++||++||+.+..+..+..++.+..... + +...+...
T Consensus 28 ~~~~i~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~~l~~~ 100 (401)
T PRK11043 28 AFKAIQADLQTSA-SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----E-SAAQLLVL 100 (401)
T ss_pred hHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----c-CHHHHHHH
Confidence 3455567778776 789999999999999999999999999999999888777766665554431 2 22222222
Q ss_pred HHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhheeE
Q 013779 339 LLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR 417 (436)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 417 (436)
.+..+.......+...++..|.+|+++++...+..+....++..++|.+.+.+.+..||+..+++.+++.++..+....
T Consensus 101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 101 RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 2232222222233444677899998889999999888889999999999999999999999998887777766554433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=114.91 Aligned_cols=150 Identities=12% Similarity=0.043 Sum_probs=104.4
Q ss_pred hHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
....+.+.+.++.+.+. .+.+...+...++..++.++.|++.||+|||+.+..+..+..++........ ....++..
T Consensus 31 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~ 107 (402)
T TIGR00897 31 LEQGWLSPFLKALGLSP-QQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFG--LGHANYPL 107 (402)
T ss_pred hHHHhHHHHHHHhCCCH-HHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh--ccCccHHH
Confidence 34456777788888876 8899999999999999999999999999999999888887777655432211 01122322
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHH-HHHHHhhHHHHHHhCcchhHHHHHHH
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN-AIVTFAFSPLKELLGAENIFLLFAAI 407 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 407 (436)
+.......+.......+.......+.+|+++|++++|+.+....+|. ..+|.+.+.+.+..|+...++....+
T Consensus 108 l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 108 ILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 22222222222222223334566788899999999999999999886 57888888888888865554444333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=116.15 Aligned_cols=147 Identities=13% Similarity=0.100 Sum_probs=113.0
Q ss_pred hhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchH
Q 013779 254 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 333 (436)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (436)
....+..|.+.++.+.++ .+.++......++..++.++.|+++||+|||+.+..+.....++....... + +..
T Consensus 35 ~~~~~~~~~i~~~~~~s~-~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~-~~~ 107 (426)
T PRK12307 35 MLIFYIMYLIKADLGLTD-MEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-----S-GVI 107 (426)
T ss_pred HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----h-HHH
Confidence 344556666777888876 788899999999999999999999999999999999888888877665542 1 222
Q ss_pred HHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHH
Q 013779 334 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI 407 (436)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 407 (436)
.+...-...+.......+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|+..|++....
T Consensus 108 ~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 108 MLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 23333333333333444555688899999999999999999999999999999998888888999988775433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=116.44 Aligned_cols=162 Identities=15% Similarity=0.071 Sum_probs=113.0
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (436)
.....|.+. +.+.+. .+.++......++..++.++.|+++||+|||+.+..+..+.+++.+....... ...+...+
T Consensus 46 ~~~~~p~~~-~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 121 (438)
T TIGR00712 46 FALAMPYLV-EQGFSK-GELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW--ATSSIAIM 121 (438)
T ss_pred HHhhhHHHH-HcCCCH-hHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc--ccchHHHH
Confidence 344556554 457766 78899999999999999999999999999999888877777776655443210 01122222
Q ss_pred HHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH-HhCcchhHHHHHHHHHHHHhh
Q 013779 336 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-LLGAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 414 (436)
.......+.......+.....+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..+|+..|++.+++.++..+.
T Consensus 122 ~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 122 FVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2222233333333334444777899999999999999999999999999888776554 468999999888877776554
Q ss_pred eeEeccc
Q 013779 415 IVRTVPE 421 (436)
Q Consensus 415 ~~~~~~~ 421 (436)
.+++.+|
T Consensus 202 ~~~~~~~ 208 (438)
T TIGR00712 202 AFAMMRD 208 (438)
T ss_pred HHHhccC
Confidence 4444444
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=116.97 Aligned_cols=156 Identities=20% Similarity=0.176 Sum_probs=116.0
Q ss_pred cCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch--h-H-HHHHHHHH
Q 013779 6 SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--G-L-GVLLVGRL 81 (436)
Q Consensus 6 ~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~-~-~~l~~~r~ 81 (436)
.|.+.++ +|.+..+.++......+...++.++.|+++||+|||+.++.+..+.+++.++++... + . .....+.+
T Consensus 294 ~p~i~~~--~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~ 371 (479)
T PRK10077 294 APEIFKT--LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 371 (479)
T ss_pred HHHHHHH--cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 3666666 788877777887888889999999999999999999999999998888877765431 1 1 12233344
Q ss_pred HHhhhhhh-hhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcc------ccccccchHHHhhhhHHHHHHH
Q 013779 82 LYGLGIGL-AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ------INAVGGWRYMYGLSAPLALLMG 154 (436)
Q Consensus 82 l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l------~~~~~~w~~~f~~~~~~~~~~~ 154 (436)
+.+.+.+. ..|....++.|.+|+++|++++++......+|.++++.+.+.+ .+.. +|++.|++.++.+++..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 450 (479)
T PRK10077 372 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF-HNGFSYWIYGCMGVLAA 450 (479)
T ss_pred HHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc-cCccHHHHHHHHHHHHH
Confidence 44444443 3367788999999999999999999999999998886665433 3444 88889998888777766
Q ss_pred HHHh-cCCCCh
Q 013779 155 IGMW-SLPPSP 164 (436)
Q Consensus 155 ~~~~-~~~es~ 164 (436)
+..+ +.||+.
T Consensus 451 ~~~~~~~~e~~ 461 (479)
T PRK10077 451 LFMWKFVPETK 461 (479)
T ss_pred HHHHhccccCC
Confidence 6554 556653
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=115.87 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=109.4
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (436)
+....|.+.++ +.+. .+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+.+..... .......+
T Consensus 48 ~~~~~p~l~~~-g~s~-~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~ 123 (452)
T PRK11273 48 FALAMPYLVEQ-GFSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW--ATSSIAVM 123 (452)
T ss_pred HHHhhHHHHHc-CCCH-HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc--ccccHHHH
Confidence 34556766655 7776 78999999999999999999999999999999988888777777665554211 01122223
Q ss_pred HHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHH-HHHhhHHHHHHhCcchhHHHHHHHHHHHHhh
Q 013779 336 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI-VTFAFSPLKELLGAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 414 (436)
.......+.......+.....+.|.+|+++|++++|+.+....+|+.+ +|.+...+....||+..|++.+++.++..++
T Consensus 124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 333233333333333433466778899999999999998888888654 4443333334458888998887776665554
Q ss_pred eeEeccc
Q 013779 415 IVRTVPE 421 (436)
Q Consensus 415 ~~~~~~~ 421 (436)
..++.||
T Consensus 204 ~~~~~~~ 210 (452)
T PRK11273 204 AFAMMRD 210 (452)
T ss_pred HHHHccC
Confidence 4444444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=110.07 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=120.6
Q ss_pred CcccCccccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh---ccc-hhHHHHHHHHH
Q 013779 7 PELSGTTWFNLSAVQLGLVVS-GSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYA-PGLGVLLVGRL 81 (436)
Q Consensus 7 p~i~~~~~~~~s~~~~g~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~ 81 (436)
|.+.++ +|.|.++.++... ...++..++.+++|+++||+|+|+.+.++.++.+++.+.. +.. ++.+.+...-+
T Consensus 247 ~~l~~~--~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~ 324 (491)
T PRK11010 247 TFLIRG--VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF 324 (491)
T ss_pred HHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 334445 8999999999984 6678999999999999999999998877666555544322 233 45555556667
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCC
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 161 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 161 (436)
++.+..+...+...++..+..+++.+++..++.+...++|..+++.+.|.+.+.. ||+..|.+.++.+++..+...+++
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666666777888899999999999999999999999999999999999887 999999999888888766665554
Q ss_pred C
Q 013779 162 P 162 (436)
Q Consensus 162 e 162 (436)
+
T Consensus 404 ~ 404 (491)
T PRK11010 404 Q 404 (491)
T ss_pred h
Confidence 3
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.4e-11 Score=109.91 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=121.7
Q ss_pred CCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhH
Q 013779 232 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 311 (436)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 311 (436)
+|+++.+.++.++..+... ......+...++.+.+. ...++....+.+...+..++.|+++||++||+++..+..
T Consensus 2 ~~~f~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~-~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~ 76 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADN----ALLFAAIALLKELHYPD-WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANG 76 (393)
T ss_pred CCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHH
Confidence 3456666655555544332 23333444567777665 678888999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHH
Q 013779 312 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 391 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 391 (436)
+..++.+.+.... + . + ..-+..+.......|...+++.|.+|+++|++++|+.+....++..+||.+.|.+
T Consensus 77 ~~~~~~~~~~~~~-----~-~--~-~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 77 IKLLGCLLMLFGI-----H-P--L-LAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL 147 (393)
T ss_pred HHHHHHHHHHHHH-----H-H--H-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777665544321 1 1 1 2223344555566677779999999999999999999999999999999999999
Q ss_pred HHHhCcchhHHHHHHHHHHHHhheeEeccc
Q 013779 392 KELLGAENIFLLFAAIAFLAVLFIVRTVPE 421 (436)
Q Consensus 392 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (436)
.+.. +...+.+.+.+.+++.+ .....||
T Consensus 148 ~~~~-~~~~~~i~~~~~~~~~~-~~~~l~~ 175 (393)
T PRK11195 148 ADPH-AEAALAVCALIYLLAAL-FNLFIPR 175 (393)
T ss_pred HHHH-HHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 8864 55555555544443333 2234444
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=112.46 Aligned_cols=149 Identities=13% Similarity=0.055 Sum_probs=113.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY----APGLGVLLVGRLLYGLGIGLA 90 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~ 90 (436)
+|.+..+...+.....+...++.++.|+++||+|||+++..+.++..++.+.... .++.+.+++..++.|++.+..
T Consensus 281 ~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (438)
T PRK09952 281 LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMV 360 (438)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 7888877666666677778889999999999999999988887766554433322 223455555667778888888
Q ss_pred hhhhhhHhhhcCcccchhhHHHHHHH-HHHHHHHHHHHHhhcccccc-ccchHHHhhhhHHHHHHHHHHhcCCCC
Q 013779 91 MHGAPLYIAETCPSQIRGTLISLKEL-FIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSLPPS 163 (436)
Q Consensus 91 ~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~l~~~l~~~l~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~es 163 (436)
.+...+++.|.+|.+.|+...++... +..+|..++|.+.+++.+.. .+|+..+...++..++..+..+.++|+
T Consensus 361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 88889999999999999888888544 45589999999999987743 258888888877777776666666664
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-11 Score=112.83 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=104.8
Q ss_pred hhHHhchHHHH-HhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEeehhhHHHHHHHHHHHHHHHHHcCCc
Q 013779 254 PSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGGFP 331 (436)
Q Consensus 254 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (436)
+....+.+.++ ++.|.+. .+.+..............+++|+++|| +|||+.+..+..+..++..++... .+.
T Consensus 38 y~~~~~l~~yl~~~lg~s~-~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~-----~~~ 111 (500)
T PRK09584 38 YGLQGIMAVYLVKQLGMSE-ADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS-----GHD 111 (500)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-----ccc
Confidence 34556677776 5577765 555565555555555556789999999 599999998888888776665532 112
Q ss_pred hHHHHHHHHHHHHhhcccccccchhccccCCccc--cchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHH
Q 013779 332 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAF 409 (436)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 409 (436)
...+.......+.......+...++..|.+|++. +..+.++.+...++|..++|.+.+++.+..||+..|.+.++...
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~ 191 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGML 191 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 2222222222333333344555578899988653 44678888999999999999999999999999999988776544
Q ss_pred HHH
Q 013779 410 LAV 412 (436)
Q Consensus 410 ~~~ 412 (436)
++.
T Consensus 192 i~~ 194 (500)
T PRK09584 192 ITV 194 (500)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-11 Score=108.81 Aligned_cols=152 Identities=21% Similarity=0.170 Sum_probs=108.0
Q ss_pred hhHHhchHH-HHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCch
Q 013779 254 PSVLYYAGP-ILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 332 (436)
Q Consensus 254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (436)
.....+.|. +.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+..+..++.+..... ..+.
T Consensus 18 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-----~~~~ 91 (366)
T TIGR00886 18 FAFSPLAVQMIKDDLGLST-AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-----VQSY 91 (366)
T ss_pred HHhHHhhhHHHHHHhCCCH-HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----hhhH
Confidence 346667775 556778876 788999999999999999999999999999999988888888777666542 1022
Q ss_pred HHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH----------hCcchhH-
Q 013779 333 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL----------LGAENIF- 401 (436)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~----------~g~~~~~- 401 (436)
..+....+..+....... ....++.|.+|+++|+++.++.....++|..+++.+.+.+.+. .+|++.+
T Consensus 92 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~ 170 (366)
T TIGR00886 92 SVLLLLRLFIGIAGGSFA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV 170 (366)
T ss_pred HHHHHHHHHHHHhchhhH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhH
Confidence 222223333333333333 3457889999999999999999988888888888877766653 3688887
Q ss_pred HHHHHHHHHHH
Q 013779 402 LLFAAIAFLAV 412 (436)
Q Consensus 402 ~~~~~~~~~~~ 412 (436)
...+.+..+..
T Consensus 171 ~~~~~~~~~~~ 181 (366)
T TIGR00886 171 IVPAGILLLPA 181 (366)
T ss_pred HHHHHHHHHHH
Confidence 43344443333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=117.61 Aligned_cols=156 Identities=17% Similarity=0.065 Sum_probs=121.7
Q ss_pred cCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc-----ch------hHH
Q 013779 6 SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----AP------GLG 74 (436)
Q Consensus 6 ~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~------~~~ 74 (436)
.|.+.++ +|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++ .+ +..
T Consensus 307 ~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (481)
T TIGR00879 307 SPTIFEN--AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNV 384 (481)
T ss_pred HHHHHHH--cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Confidence 4555555 7888888999999999999999999999999999999999988888877776652 11 223
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHH
Q 013779 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 154 (436)
Q Consensus 75 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~ 154 (436)
.+....++.+.......+....++.|.+|+++|++++++.....++|.++++.+.+.+.+.. +|++.|++.++++++..
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~ 463 (481)
T TIGR00879 385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-GVGGVFIFFGGLNVLGL 463 (481)
T ss_pred HHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccceehhHHHHHHHHH
Confidence 33333333333333344666777899999999999999999999999999999999888876 89999999888888776
Q ss_pred HHHh-cCCCCh
Q 013779 155 IGMW-SLPPSP 164 (436)
Q Consensus 155 ~~~~-~~~es~ 164 (436)
+..+ +.||++
T Consensus 464 i~~~~~~~~~~ 474 (481)
T TIGR00879 464 IFVYFFLPETK 474 (481)
T ss_pred HHHheecccCC
Confidence 6654 456543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=111.94 Aligned_cols=155 Identities=20% Similarity=0.196 Sum_probs=122.8
Q ss_pred cCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHh
Q 013779 6 SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-APGLGVLLVGRLLYG 84 (436)
Q Consensus 6 ~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G 84 (436)
+|.+.++ +|.+..+.|...+.+.++..++.+..|++.||+|||+.+..+..+..++..+... .++...+ .-++.|
T Consensus 228 lp~~l~~--~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g 303 (393)
T PRK09705 228 LPAFYIE--IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCG 303 (393)
T ss_pred HHHHHHH--cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHH
Confidence 4555555 7999999999999999999999999999999999999998888877777665543 3332222 234668
Q ss_pred hhhhhhhhhhhhHhhhcCc-ccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH-hcCCC
Q 013779 85 LGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPP 162 (436)
Q Consensus 85 ~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~e 162 (436)
++.+...|.......+..+ +++|++..++.+....++..++|.+.+++.+..++|+..|++..+.+++..+.. .+.||
T Consensus 304 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 304 LGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888888877777777775 578999999999999999999999999999887568888888877777665544 46666
Q ss_pred Ch
Q 013779 163 SP 164 (436)
Q Consensus 163 s~ 164 (436)
++
T Consensus 384 ~~ 385 (393)
T PRK09705 384 RF 385 (393)
T ss_pred cc
Confidence 54
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=114.17 Aligned_cols=149 Identities=13% Similarity=-0.026 Sum_probs=114.8
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 013779 267 AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQ 346 (436)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (436)
.+.+. .+.+.+.+.+.++..++.++.|++.||+|+|+.+..+..+..++.++..... ......+...-+..+...
T Consensus 71 ~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~~~G~~~ 145 (465)
T TIGR00894 71 FKWSG-ALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA----GGGIALVVFCRVIQGLAQ 145 (465)
T ss_pred CCCCH-HHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHhc
Confidence 44554 6788899999999999999999999999999998888877776655543221 122333444444555555
Q ss_pred cccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHh-CcchhHHHHHHHHHHHHhheeEecc
Q 013779 347 ISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL-GAENIFLLFAAIAFLAVLFIVRTVP 420 (436)
Q Consensus 347 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 420 (436)
....|....++.|.+|+++|+++.|+.+....+|..+++.+.+.+.+.. ||+..|.+.++..++..++.+...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhc
Confidence 5666677789999999999999999999999999999999999999884 9999999888877666554444343
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=99.35 Aligned_cols=316 Identities=16% Similarity=0.146 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcCccc
Q 013779 26 VSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ 105 (436)
Q Consensus 26 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 105 (436)
.++-+....+..++.+.+.|+.|+|..+.++...+..-.+..-+ +|-+.++..-.+.|+|.+..+..-..+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77788888999999999999999999999999998877666655 56778889999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhccccccc-------cch-HHH----------hhhhHH---HHHHHHHHhcCCCCh
Q 013779 106 IRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GWR-YMY----------GLSAPL---ALLMGIGMWSLPPSP 164 (436)
Q Consensus 106 ~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-------~w~-~~f----------~~~~~~---~~~~~~~~~~~~es~ 164 (436)
.+.+-.++..+....+.++|......+..... +-+ ..+ .+.+++ ..+..+...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 99999999999999999998776554332110 111 111 111111 111111111222110
Q ss_pred HHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHHHH
Q 013779 165 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 244 (436)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (436)
. . .+. +. . + ....+.-....+++++++...+......
T Consensus 215 ~-~---------------~~~---------------------~~----~-~-~~~~~~l~~~~~l~~~~~ml~L~~~f~~ 251 (461)
T KOG3098|consen 215 V-V---------------NCK---------------------SS----S-E-TSFSELLKLTFKLLKTPKMLLLFPFFFY 251 (461)
T ss_pred h-h---------------hhh---------------------hh----c-c-ccHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence 0 0 000 00 0 0 0001111123345566655544443333
Q ss_pred HHHHHHhChhhHHhchHHHH--HhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh---cCCccEeehhhHHHHHHHHH
Q 013779 245 VLFQQITGQPSVLYYAGPIL--QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD---LGRRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~ 319 (436)
..+.... ....|...+. ...+.++....+......+.+.++++...+.+.+| +|+++++..+..+..+..++
T Consensus 252 tG~~~Sf---~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~l 328 (461)
T KOG3098|consen 252 TGLETSF---WISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLL 328 (461)
T ss_pred HHHHHHH---HHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHH
Confidence 3332221 1111211111 13344443556667777788888888888888766 57788888777777776666
Q ss_pred HHHHHHHHcC------------CchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHh
Q 013779 320 LSAYYKILGG------------FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 387 (436)
Q Consensus 320 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 387 (436)
.........+ ........+.+..|.....+....+.++.+.+| +.|..+.++.-.-..++..++-..
T Consensus 329 i~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 329 IHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhh
Confidence 5543321110 112334444455555566666666788888885 788888888887777777665554
Q ss_pred hH
Q 013779 388 FS 389 (436)
Q Consensus 388 ~~ 389 (436)
..
T Consensus 408 ~~ 409 (461)
T KOG3098|consen 408 SP 409 (461)
T ss_pred hh
Confidence 44
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-10 Score=103.33 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=130.0
Q ss_pred hhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEee
Q 013779 228 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI 307 (436)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 307 (436)
+++.++....+++...+..+... .+.+++--++++.+..+ ...|......-.+.++..++.+++.+|+|+-+++.
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~----lv~tFLfWHled~~~~~-~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~ 440 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVG----LVFTFLFWHLEDLGGIK-TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMY 440 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHH----HHHHHHHHHHhhcCCcc-eeeeehhhhhccchHHHHHHHHHHHHHhcccceee
Confidence 45666655544433333333322 33444444677777555 66777788888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHH-HHHHHHHHHH
Q 013779 308 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTF 386 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~ 386 (436)
.++.+..+-++.+... .++|..+.+-.+-.......+..+. +|++...|++.++++.++.... ..+|-.+|++
T Consensus 441 lgLa~~~~Rf~~~S~L-----~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl 514 (618)
T KOG3762|consen 441 LGLACNVGRFLYYSYL-----QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL 514 (618)
T ss_pred ehhhHHHHHHHHHHHh-----cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhh
Confidence 9998888887776653 5666666655555555555555444 8999999999999999998766 5678889999
Q ss_pred hhHHHHHHhCcchhHHHHHHHHHHHHhh
Q 013779 387 AFSPLKELLGAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 387 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 414 (436)
+.|.+.+.+|.+..|.++++.+++..++
T Consensus 515 IGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 515 IGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred hhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 9999999999988998888777766554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.4e-11 Score=111.43 Aligned_cols=152 Identities=14% Similarity=0.055 Sum_probs=110.5
Q ss_pred hhHHhchHHHHH-hcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEeehhhHHHHHHHHHHHHHHHHHcCCc
Q 013779 254 PSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGGFP 331 (436)
Q Consensus 254 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (436)
+....+++.+++ +.+.+. .+.......+.....+..+++|+++|| +||||++..+..+..++.+.+... .+.
T Consensus 31 y~~~~~l~~yl~~~lg~~~-~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~-----~~~ 104 (489)
T PRK10207 31 YGVQGILAVFFVKQLGFSQ-EQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS-----LLK 104 (489)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh-----ccc
Confidence 345555555554 467665 667777777777777778899999999 999999999999998888776642 111
Q ss_pred hHHHHHHHHHHHHhhcccccccchhccccCCccc--cchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHH
Q 013779 332 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAF 409 (436)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 409 (436)
...+.......+.......|...+++.|.+|++. |+.++++.+...++|..++|.+.+++.+..||++.|++.++...
T Consensus 105 ~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~ 184 (489)
T PRK10207 105 PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI 184 (489)
T ss_pred hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 2222222233344444455566689999998774 57789999999999999999999999999999999988654443
Q ss_pred HH
Q 013779 410 LA 411 (436)
Q Consensus 410 ~~ 411 (436)
++
T Consensus 185 ~~ 186 (489)
T PRK10207 185 IA 186 (489)
T ss_pred HH
Confidence 33
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-11 Score=108.83 Aligned_cols=146 Identities=17% Similarity=0.051 Sum_probs=123.4
Q ss_pred CcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhh
Q 013779 7 PELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 86 (436)
Q Consensus 7 p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 86 (436)
|.+.+| .|.+..+.|...+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+..++.+.+++..++.|++
T Consensus 229 ~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 229 AIYWQA--AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHH--CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334445 799999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred hhhhhhhhhhHhhhcCcccchhhHHHHHH-HHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH
Q 013779 87 IGLAMHGAPLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 157 (436)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~ 157 (436)
.+...+....++.+. +++++++..+... ...++|..+||.++|.+.+.. ++ ..|+..+.+.++.++..
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~-g~-~~~~~~~~~~~~~~~~~ 375 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL-GA-GVFWVMALVALPALFIR 375 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHH
Confidence 999999999998886 5667788888876 556788899999999999887 76 46666666665544433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-11 Score=112.93 Aligned_cols=152 Identities=23% Similarity=0.334 Sum_probs=137.2
Q ss_pred cccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 013779 4 AQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 83 (436)
Q Consensus 4 ~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 83 (436)
.++|.+.+ +.+|.++...|++.+++.+|..++++..+++.+|+++++.+..+.++++++.+..+++++.+...+..++.
T Consensus 239 aLlPl~a~-~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~ 317 (524)
T PF05977_consen 239 ALLPLFAR-DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA 317 (524)
T ss_pred HhhhHHHH-HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 35677765 34899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH
Q 013779 84 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 157 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~ 157 (436)
|++.....+...+.+.+..|++.|||+++++.+....+..+|..+.|.+.+.. |-+..+.+.++..++..++.
T Consensus 318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~-g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF-GVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888 89988888776655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=108.85 Aligned_cols=149 Identities=20% Similarity=0.185 Sum_probs=133.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHhcc--------chhHHHHHHHHHHH
Q 013779 14 WFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK--RELIIAAVLYALGALTTAY--------APGLGVLLVGRLLY 83 (436)
Q Consensus 14 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~ 83 (436)
.+|++..+...+.-+..+..+++++++|++.||+|.| +++..+++++.+..+...+ .++.+.+.+.-++.
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~ 390 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLI 390 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999 8988888888665555444 56788899999999
Q ss_pred hhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCC
Q 013779 84 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 162 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e 162 (436)
|+..|...+...++.+|..|+++.+..+|++....-....+||++.+.+.+...+-|+.+....++.++..++.+++++
T Consensus 391 G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 391 GLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999998887756899999888888888777777655
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=107.27 Aligned_cols=163 Identities=12% Similarity=0.082 Sum_probs=106.9
Q ss_pred HHhchHHHHH-hcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 256 VLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 256 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
.....+.+-+ +.+.+. .+.+++.+...+...+.++..|++.||+|.|++...+..+..+..+......+.. .++...
T Consensus 53 ~~~l~~~~~~~~~~ls~-~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~-~~s~~~ 130 (462)
T PRK15034 53 FSAVTVNLNKIGFNFTT-DQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP-NTPFGI 130 (462)
T ss_pred HHHHHHHhhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc-CCCHHH
Confidence 3333444444 577877 7889999989999999999999999999999999888888777666555421111 123333
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHH-----HHhC-------------
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-----ELLG------------- 396 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~-----~~~g------------- 396 (436)
+.....+.+..+..+ +.....+++.+|+++||++.|+....+++|..+++.+.+.+. +..|
T Consensus 131 lli~r~l~Gigg~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~ 209 (462)
T PRK15034 131 FIVIALLCGFAGANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMS 209 (462)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHH
Confidence 433333444333333 445578899999999999999997777777776666555433 3222
Q ss_pred cchhHHHHHHHHHHHHhheeEeccc
Q 013779 397 AENIFLLFAAIAFLAVLFIVRTVPE 421 (436)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (436)
++.+.++...+.++..++.++..++
T Consensus 210 ~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 210 LANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4444555566555555555544444
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-11 Score=111.50 Aligned_cols=144 Identities=27% Similarity=0.211 Sum_probs=114.4
Q ss_pred cCccc-CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH--HHhcc--chhHHHHHHHH
Q 013779 6 SPELS-GTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA--LTTAY--APGLGVLLVGR 80 (436)
Q Consensus 6 ~p~i~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~r 80 (436)
+|.+. ++ +|.++.+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. ....+ .++.+.+....
T Consensus 242 ~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (394)
T TIGR00883 242 LPTYLTQT--LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLV 319 (394)
T ss_pred HHHHHHHh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 44444 34 78999999999999999999999999999999999998775554443333 12222 34677777888
Q ss_pred HHHhhhhhhhhhhhhhHhhhcCcccchhhHHHH-HHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHH
Q 013779 81 LLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL 151 (436)
Q Consensus 81 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~ 151 (436)
++.|++.+...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+.+..+.|+..++.....++
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 320 LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 999999988999999999999999999999998 45666789999999999998887338888777665544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-11 Score=94.84 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhcccc
Q 013779 281 VIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI 360 (436)
Q Consensus 281 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (436)
...++.+++.++.+++.||++||+.+..+.....++....... ++.+. ........+.......+....+..|.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----SNITV-LIIARFLQGFGAAFALVAGAALIADI 79 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----ccHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3457788899999999999999998887777666665554431 22222 22333333333334445666888999
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhheeEeccc
Q 013779 361 FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 421 (436)
Q Consensus 361 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (436)
+|+++|+++.++.+....++..++|.+.+.+.+..+|+..+.+.+.+.+++.+......||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999998888888888887777776655554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=105.25 Aligned_cols=156 Identities=15% Similarity=0.026 Sum_probs=114.5
Q ss_pred hHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
......|.+.++.+.+. .+.+++.+...++..++.+..+++.||+|||+.+..+..+.+++..+...... ..++..
T Consensus 21 ~~~~l~~~~~~~~~~s~-~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~---~~~~~~ 96 (410)
T TIGR00885 21 ITNPMVPQFQQAFTLTA-FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE---IMNYTL 96 (410)
T ss_pred hHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---hccHHH
Confidence 34466687878888876 78999999999999999999999999999999999999888888766543211 122333
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH---------------------
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE--------------------- 393 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~--------------------- 393 (436)
+....+..+.......+....++.+..|++++++..++.+....+|..++|.+.+.+..
T Consensus 97 ~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (410)
T TIGR00885 97 FLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSA 176 (410)
T ss_pred HHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHH
Confidence 33333333333333333444777788898999999999999999999999999887742
Q ss_pred -----HhCcchhHHHHHHHHHHHHhh
Q 013779 394 -----LLGAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 394 -----~~g~~~~~~~~~~~~~~~~~~ 414 (436)
..+|+.+|++.+++.++..++
T Consensus 177 ~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 177 IKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245888888887766655443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-10 Score=104.51 Aligned_cols=147 Identities=17% Similarity=0.036 Sum_probs=114.6
Q ss_pred CcccCccccccchhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc------chhHHHHHHH
Q 013779 7 PELSGTTWFNLSAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY------APGLGVLLVG 79 (436)
Q Consensus 7 p~i~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~ 79 (436)
|.+.+| .|.+++++|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++...+...
T Consensus 232 ~~~l~~--~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 232 KLYLVD--AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred hHHHHh--cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 444455 79999999999988764 66778999999999999999988877665333322211 2334445555
Q ss_pred HHHHhhhhhhhhhhhhhHhhhcCcc-cchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHH
Q 013779 80 RLLYGLGIGLAMHGAPLYIAETCPS-QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG 156 (436)
Q Consensus 80 r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~ 156 (436)
..+.+++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+.+.. |++..|++.+++.++..+.
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHH
Confidence 6667777888888888888787776 88999999999999999999999999998877 8999999888777665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=100.86 Aligned_cols=160 Identities=14% Similarity=0.067 Sum_probs=123.8
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (436)
.....+.+-++.++++ .+.+++.++..+.+.+.++..|.+.||+|.|++...+..+..+-.+.+.+... ....+.+
T Consensus 33 ~s~l~~~i~~~~~LS~-~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~---~~~~~~l 108 (417)
T COG2223 33 FSPLGVFIKSDFGLSE-GQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT---YPSTWQL 108 (417)
T ss_pred HHHHHhhhccccCCCH-HHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc---CCchHHH
Confidence 4444445557788887 89999999999999999999999999999999999998888887777765432 2222334
Q ss_pred HHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC---cchhHHHHHHHHHHHH
Q 013779 336 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG---AENIFLLFAAIAFLAV 412 (436)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~ 412 (436)
+.+.++.+..+..+. ....++++.+|+|++|.+.|+.. .+++|..+...+.+.+....| |+.+..+.....++..
T Consensus 109 l~~gll~G~~GasFa-v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~ 186 (417)
T COG2223 109 LVIGLLLGLAGASFA-VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAA 186 (417)
T ss_pred HHHHHHHhcccceeh-cccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 44588999999999999999998 999999999999999999998 8888777777777776
Q ss_pred hheeEeccc
Q 013779 413 LFIVRTVPE 421 (436)
Q Consensus 413 ~~~~~~~~~ 421 (436)
+..++..++
T Consensus 187 v~~~~~~~d 195 (417)
T COG2223 187 VLAWLGMND 195 (417)
T ss_pred HHHHHHhCC
Confidence 666655543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=102.19 Aligned_cols=150 Identities=23% Similarity=0.201 Sum_probs=135.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhh
Q 013779 14 WFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 93 (436)
Q Consensus 14 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 93 (436)
++|++..++.++.-...+..+++++++|+|.||+|.|+++..++++..+.++..-+...-..+.++-.+.|.+.|+.+..
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~ 361 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQAS 361 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHH
Confidence 49999999999999999999999999999999999999999999999999988888777777778888999999999999
Q ss_pred hhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCC
Q 013779 94 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS 163 (436)
Q Consensus 94 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es 163 (436)
+.++..+..|++|-++.+|+++.....+..+||.+.+.+.+...+-|..+....++..+..+..+.+|+.
T Consensus 362 SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 362 SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999999999999999999999988777678888887777777777777777654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-10 Score=109.21 Aligned_cols=175 Identities=14% Similarity=0.003 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHH
Q 013779 240 IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 319 (436)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 319 (436)
+...+..+...........-++.+-++.+.++ .+.+++.+...++..++.++.+++.||.+||+.+.++.++++++.++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss-~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll 114 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLST-SSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL 114 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCC-CcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence 33333444443333345556677777788877 78899999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHc---------------------------------------------CCchHHHHHHHHHHHHhhcccccccc
Q 013779 320 LSAYYKILG---------------------------------------------GFPLVAVSALLLYVGCYQISFGPISW 354 (436)
Q Consensus 320 ~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (436)
..+.....+ ...+..+++.-++.|.......+...
T Consensus 115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~ 194 (633)
T TIGR00805 115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI 194 (633)
T ss_pred HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence 765321100 00123333444555555555666777
Q ss_pred hhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHh---------------------C-cchhHHHHHHHHHHHH
Q 013779 355 LMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL---------------------G-AENIFLLFAAIAFLAV 412 (436)
Q Consensus 355 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~---------------------g-~~~~~~~~~~~~~~~~ 412 (436)
+++.|.+|+++|+.+.|+.+....+|..+|+.+.+.+.+.+ | |+..|++.+++.++.+
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~ 274 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS 274 (633)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887643 1 4556777776666655
Q ss_pred hhe
Q 013779 413 LFI 415 (436)
Q Consensus 413 ~~~ 415 (436)
+..
T Consensus 275 v~l 277 (633)
T TIGR00805 275 IPF 277 (633)
T ss_pred HHH
Confidence 443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-10 Score=104.49 Aligned_cols=141 Identities=14% Similarity=0.190 Sum_probs=121.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhh
Q 013779 16 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 95 (436)
Q Consensus 16 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 95 (436)
+.+..+.|.+.+...+...++.+..|++.||+|||+.+.++.++.++...+...+++.+.+++.++++|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999998888878888999999999999998877666667
Q ss_pred hHhhhcCcccchhhHHHH-HHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHH
Q 013779 96 LYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 157 (436)
Q Consensus 96 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~ 157 (436)
.+..+..+++.++...+. .+....+|..+++.+++++.+.. ||+..|.+.++..++..+..
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHHHHHHHHHHHHHHHHHH
Confidence 777887887777776665 67889999999999999999987 99999999888877765543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.8e-08 Score=88.24 Aligned_cols=330 Identities=15% Similarity=0.023 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc--------ch----h---HHHHHHHHHHHhhhhhh
Q 013779 25 VVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY--------AP----G---LGVLLVGRLLYGLGIGL 89 (436)
Q Consensus 25 ~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--------~~----~---~~~l~~~r~l~G~~~~~ 89 (436)
..-.-.+..++.++..|...||..|.++...+.+..-++..+... .+ + ...+++.-.+.|.-.-.
T Consensus 43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L 122 (432)
T PF06963_consen 43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL 122 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 333445567788899999999999999877765554333322211 11 1 12222222222222221
Q ss_pred hhhh-hhhHhhhcC------cccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcC--
Q 013779 90 AMHG-APLYIAETC------PSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-- 160 (436)
Q Consensus 90 ~~~~-~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~-- 160 (436)
...+ ..+.=.||. +++++.+.++...-.--+.-+++|++.|.+.... +.+....+.+...++..+.-+++
T Consensus 123 as~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~-s~~~~~~~i~~~N~~S~~vEy~~l~ 201 (432)
T PF06963_consen 123 ASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA-SPVIAAIFIAGWNLASVFVEYFLLA 201 (432)
T ss_pred HHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111223443 3556677778888888889999999999988866 77777666666665554432211
Q ss_pred ---CCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhh-------HHHHHHhhhhccccccccccchhhc
Q 013779 161 ---PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQ-------IEDTLVSLKSSYTDEKSEGSFLEVF 230 (436)
Q Consensus 161 ---~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (436)
...|. ++..++.++.++.++.+ ......... ..-++...+++.-+
T Consensus 202 ~VY~~~P~-----------------------L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~w~~Y~ 256 (432)
T PF06963_consen 202 RVYNSVPA-----------------------LAVKKRSSESESSSDEESSSESSSDPSILKRLW--NPLRTIIRGWRTYF 256 (432)
T ss_pred HHHHhChH-----------------------hcCCCCCccccccccccccccccchhhHHHHHH--HHHHHHhccHHHHH
Confidence 11111 00000000000000000 000000000 00112234566667
Q ss_pred cCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhh
Q 013779 231 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 310 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 310 (436)
+++.+..-+ +..+.++...+ +......|+.+.|.++ ...+..-....+.++.+.+..+++.+|+|..|.-.++.
T Consensus 257 ~q~vflas~-alalLY~TVLs----f~~lmt~yl~~~G~s~-~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l 330 (432)
T PF06963_consen 257 RQPVFLASF-ALALLYFTVLS----FGGLMTAYLKSQGYSP-SVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSL 330 (432)
T ss_pred hCHHHHHHH-HHHHHHHHHhc----CcHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 766554433 23333333322 2233444577778887 78888999999999999999999999999988887777
Q ss_pred HHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHH---hhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHH
Q 013779 311 CGIALSLLLLSAYYKILGGF-PLVAVSALLLYVGC---YQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 386 (436)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 386 (436)
.....+..+.......+... .......++..... +--++-.....+.+|..|+++||+..|+-+..+++...+.-.
T Consensus 331 ~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 331 WWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 66555544444333222222 11111111111111 111222233467889999999999999999888887655433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.9e-10 Score=117.46 Aligned_cols=184 Identities=14% Similarity=0.001 Sum_probs=118.9
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccE
Q 013779 227 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 305 (436)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 305 (436)
.++++++++++++...++..+........+..+..+.+.. .+.+.....++..+...+..++..+++|+++||++||++
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 3467778888777666666554332222222222222222 222222346777778888889999999999999999997
Q ss_pred eehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHH
Q 013779 306 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 385 (436)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 385 (436)
+........+.......... ......++...++.+.....+.|...+++.+.+|+++++.++|+.++...+|..+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~---~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp 161 (1140)
T PRK06814 85 AKILKFAEIGIAALAIYGFH---LNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGT 161 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHH
Confidence 54322222221111111111 123344444555555556667788889999999999999999999999999999999
Q ss_pred HhhHHHHHHhCcchhHHHHHHHHHHHHh
Q 013779 386 FAFSPLKELLGAENIFLLFAAIAFLAVL 413 (436)
Q Consensus 386 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 413 (436)
.+.|.+.+..+|...|....++.+++.+
T Consensus 162 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~ 189 (1140)
T PRK06814 162 IIGGLATISGNFVILVALLMGIAVLGWL 189 (1140)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 9999999999988887444444444333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-09 Score=102.13 Aligned_cols=158 Identities=15% Similarity=0.086 Sum_probs=101.8
Q ss_pred hhHHhchHHHHHhcC---CCcchh---hHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHH
Q 013779 254 PSVLYYAGPILQSAG---FSAAAD---ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL 327 (436)
Q Consensus 254 ~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (436)
..+....|.+.++.+ .+. .+ .+.......++..++.++.|+++||+|||+.+..+.....++.+.........
T Consensus 39 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 117 (432)
T PRK10406 39 YVYSFCSLYFAHIFFPSGNTT-TQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYE 117 (432)
T ss_pred HHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCch
Confidence 345555566666654 222 22 23334444566669999999999999999999999888888777765421000
Q ss_pred c--CCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHH--------HHhCc
Q 013779 328 G--GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK--------ELLGA 397 (436)
Q Consensus 328 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~--------~~~g~ 397 (436)
. ......+...-+..+.......+...+++.|.+|+++|+.+.++.+.....|..+++.+...+. +..||
T Consensus 118 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 197 (432)
T PRK10406 118 TIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW 197 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence 0 0001123333334444444455666799999999999999999887777777777766544433 25689
Q ss_pred chhHHHHHHHHHHHH
Q 013779 398 ENIFLLFAAIAFLAV 412 (436)
Q Consensus 398 ~~~~~~~~~~~~~~~ 412 (436)
+..|.+.++..++..
T Consensus 198 r~~F~i~~~~~ll~~ 212 (432)
T PRK10406 198 RIPFALGAVLAVVAL 212 (432)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988776665543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=102.36 Aligned_cols=119 Identities=22% Similarity=0.284 Sum_probs=103.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHhhhhhhhhhhhhh
Q 013779 18 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-PGLGVLLVGRLLYGLGIGLAMHGAPL 96 (436)
Q Consensus 18 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 96 (436)
++.+.+++.+...++..++.+++++++||+|||+++..+.++.+++.++..+. ++.+.+.+..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888999999999999999999999999999988888887776664 46677788889999999999999999
Q ss_pred HhhhcCc-------ccchhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 013779 97 YIAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQINAV 136 (436)
Q Consensus 97 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~ 136 (436)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998865 456799999999999999999999999887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=8e-10 Score=105.72 Aligned_cols=149 Identities=14% Similarity=-0.017 Sum_probs=103.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccc
Q 013779 273 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 352 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (436)
.+.+.+.....++.+++.++.++++||+|||+.+..+..+..++..+...............+...-+..+.......+.
T Consensus 56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 135 (502)
T TIGR00887 56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPL 135 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHH
Confidence 45678888899999999999999999999999998887777776665543210000001223333333444444444556
Q ss_pred cchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH-----------------------HhCcchhHHHHHHHHH
Q 013779 353 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-----------------------LLGAENIFLLFAAIAF 409 (436)
Q Consensus 353 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~-----------------------~~g~~~~~~~~~~~~~ 409 (436)
...++.|.+|++.|+++.++.+....+|..+++.+...+.. ..+|+..+.+.++..+
T Consensus 136 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~ 215 (502)
T TIGR00887 136 SAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL 215 (502)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHH
Confidence 66999999999999999999999999999888887765532 1268888866665555
Q ss_pred HHHhheeEecccC
Q 013779 410 LAVLFIVRTVPET 422 (436)
Q Consensus 410 ~~~~~~~~~~~~~ 422 (436)
+..+ ..++.||+
T Consensus 216 i~~~-~~~~lpES 227 (502)
T TIGR00887 216 LALY-FRLTIPET 227 (502)
T ss_pred HHHH-HHHhCCCC
Confidence 4443 33456765
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.4e-10 Score=106.76 Aligned_cols=135 Identities=22% Similarity=0.169 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhH--HHHHHHHHHHhhhhhhhhhhhhhHhhhcCcc
Q 013779 27 SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL--GVLLVGRLLYGLGIGLAMHGAPLYIAETCPS 104 (436)
Q Consensus 27 s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 104 (436)
....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+....+..|.+|+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 34456677888999999999999999999999998888877776543 5555666777777777888889999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCCh
Q 013779 105 QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 164 (436)
Q Consensus 105 ~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~ 164 (436)
+.|++++|+.+....+|.+++|.+.+ +.+ . ++..++++.+...++..+..+++||+.
T Consensus 442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 442 VVRNLGVGVCSTMARVGSIISPFLVY-LGE-K-WLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-H-HHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999988 333 3 677888888888888877777888864
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=101.61 Aligned_cols=137 Identities=12% Similarity=-0.042 Sum_probs=99.8
Q ss_pred ChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCc
Q 013779 252 GQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP 331 (436)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (436)
.......+.|.+.++.+.++ .+.++......++..++.++.|++.||+|||+.+..+..+.+++.++...... .++
T Consensus 41 ~~~~~~~~~p~i~~~~~~s~-~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~---a~~ 116 (438)
T PRK10133 41 ANNLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---IMN 116 (438)
T ss_pred HHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh---cCC
Confidence 33456677888877788876 89999999999999999999999999999999999999888888766532111 223
Q ss_pred hHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHH
Q 013779 332 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 392 (436)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 392 (436)
...+....+..+.......+....++.|..|+++|+..+++.+....+|..++|.+.+.+.
T Consensus 117 ~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444567778766666666789999999999999998876544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=101.71 Aligned_cols=171 Identities=18% Similarity=0.140 Sum_probs=119.9
Q ss_pred HHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc-----CCcc-EeehhhHHHHHHHH
Q 013779 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-----GRRP-LLIGGVCGIALSLL 318 (436)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~-~~~~~~~~~~~~~~ 318 (436)
..+.+...+.....-+|.++++.|.+. .+.+++...... .+..++.|+++||+ |||| .+..+....+++..
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~-~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDI-QTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 344444445566777899999999988 788877666554 68889999999999 7776 56666666666555
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH-hCc
Q 013779 319 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGA 397 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~g~ 397 (436)
.+... ......+.+....+..+.......+...+++.|..|+++|+++.++......+|..+++.+.+.+.+. .||
T Consensus 84 ~l~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw 160 (402)
T PRK11902 84 AMAFC---PPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW 160 (402)
T ss_pred HHHhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence 54432 11122333333323333444455566678999999999999999999998899999999999988885 489
Q ss_pred chhHHHHHHHHHHHHhheeEecccC
Q 013779 398 ENIFLLFAAIAFLAVLFIVRTVPET 422 (436)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (436)
+..|++.+++.++..+.. ...+|+
T Consensus 161 ~~~f~i~a~~~l~~~l~~-~~~~e~ 184 (402)
T PRK11902 161 GNTYLLMAGLMLAGALTT-LWAPEP 184 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 999998888776655433 334443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-10 Score=101.91 Aligned_cols=161 Identities=17% Similarity=0.065 Sum_probs=109.5
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc-----CCccEe-ehhhHHHHHHHHHHHHHHHHHcC
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-----GRRPLL-IGGVCGIALSLLLLSAYYKILGG 329 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 329 (436)
...-.|.+.++.|.+. .+.+..... .+...+ .++.|+++||+ ||||.+ ..+....++....+.... +.
T Consensus 7 ~~~~~~~~~~~~g~s~-~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---~~ 80 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSL-KTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---PS 80 (356)
T ss_pred HHhHHHHHHHHcCCCH-HHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---cc
Confidence 4445677889998887 677777544 333343 88999999997 788864 445555555444443211 11
Q ss_pred CchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC--------cchhH
Q 013779 330 FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--------AENIF 401 (436)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g--------~~~~~ 401 (436)
.....+....+..+.......+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..| |+..|
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f 160 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF 160 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence 2222222332233333344455566889999999999999999999999999999999999988888 99999
Q ss_pred HHHHHHHHHHHhheeEecccC
Q 013779 402 LLFAAIAFLAVLFIVRTVPET 422 (436)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~ 422 (436)
++.+++.++..+...+..||+
T Consensus 161 ~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 161 FWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCC
Confidence 888887777665444344554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=91.65 Aligned_cols=155 Identities=21% Similarity=0.154 Sum_probs=121.7
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc-------hhHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-------PGLGV 75 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~ 75 (436)
+..-|++++. +|+|.+|.+.+.+...+|..+ .++.|.+.||+|++.++.+|.+...++..+...+ .++|.
T Consensus 22 s~yS~~Lk~~--l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~ 98 (250)
T PF06813_consen 22 SAYSPQLKSR--LGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWL 98 (250)
T ss_pred hhhhHHHHHH--hCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHH
Confidence 4556788888 999999999999999999987 5888999999999999999999999998776542 46788
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHH
Q 013779 76 LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 155 (436)
Q Consensus 76 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~ 155 (436)
+.+..++.|.+.+....+......+.|| ++||++.|+.-...+++..+-..+...+.+.. .-+..++....+.++..+
T Consensus 99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~-~~~fll~la~~~~~v~l~ 176 (250)
T PF06813_consen 99 MCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD-PSSFLLFLAVLPAVVCLV 176 (250)
T ss_pred HHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHH
Confidence 8888899999888777777777778887 68999999999999999888777766555543 344454444445555555
Q ss_pred HHhcCCC
Q 013779 156 GMWSLPP 162 (436)
Q Consensus 156 ~~~~~~e 162 (436)
..+++++
T Consensus 177 ~~~~vr~ 183 (250)
T PF06813_consen 177 AMFFVRP 183 (250)
T ss_pred Hhhheec
Confidence 5555443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-08 Score=95.80 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=120.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHhccch--------hHHHHHHHHHHHhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAP--------GLGVLLVGRLLYGL 85 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~--------~~~~l~~~r~l~G~ 85 (436)
+|.++++...+...+....-+..+++|+++|+ +||++.+.++.++..++..+.+++. .....+++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999995 6999999999999999988877642 12346678888999
Q ss_pred hhhhhhhhhhhHhhhcCccc---chhhHHHHHHHHHHHHHHHHHHHhhcccccc------ccchHHHhhhhHHHHHHHHH
Q 013779 86 GIGLAMHGAPLYIAETCPSQ---IRGTLISLKELFIVLGILLGYFVGSFQINAV------GGWRYMYGLSAPLALLMGIG 156 (436)
Q Consensus 86 ~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~------~~w~~~f~~~~~~~~~~~~~ 156 (436)
|.|+.-|...+...|.++++ +|...+.++..+.++|..+++.+.+++.+.. .+|...|.+.++..++..++
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999754 3677899999999999999999888775321 26999999988888777655
Q ss_pred Hh
Q 013779 157 MW 158 (436)
Q Consensus 157 ~~ 158 (436)
..
T Consensus 178 f~ 179 (654)
T TIGR00926 178 FM 179 (654)
T ss_pred HH
Confidence 44
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=101.59 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=104.5
Q ss_pred hHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 255 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
.+..+.+.+.++.+.+. .+.+.+...... .....++.|++.||+|+|+++.++..+..++.++........-..+.+.
T Consensus 45 ~fsv~s~~L~~~lgls~-~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~ 122 (591)
T PTZ00207 45 AFNLISGAMQARYNLTQ-RDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR 122 (591)
T ss_pred HHHHHHHHHHHHhCcCH-HHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH
Confidence 45677788888888887 566666555333 3345667899999999999999999999998887765321000122333
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhh
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 414 (436)
+.+.....+.......+.....+.+.+| ++||++.|+......+|+++.+.+...+.. .+++..|++.+++.++..++
T Consensus 123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 123 LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence 3333333333332233333456677887 789999999999999999865555554443 34666777777776666555
Q ss_pred eeEecc
Q 013779 415 IVRTVP 420 (436)
Q Consensus 415 ~~~~~~ 420 (436)
...+.+
T Consensus 201 ~~~~vr 206 (591)
T PTZ00207 201 AIVFMR 206 (591)
T ss_pred HHhhee
Confidence 444443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.9e-10 Score=106.28 Aligned_cols=178 Identities=17% Similarity=0.103 Sum_probs=114.8
Q ss_pred cCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhh
Q 013779 231 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 310 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 310 (436)
+++++...+...++..............-++.+.++.|.++ ...++.....+...+..++.|+++|.+|||...+.+.
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~--~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~ 115 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSD--NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGS 115 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCc--cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Confidence 33444444433334333332222222334466667777764 7778888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHH
Q 013779 311 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 390 (436)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 390 (436)
++..++.++.... ++....+....+...+ .+........++|..|.+.|..+.++.....-.....+|.+...
T Consensus 116 ~l~vvG~Iv~atA-----~~~~~~iag~~l~Gvg--aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~ 188 (599)
T PF06609_consen 116 LLGVVGSIVCATA-----QNMNTFIAGMVLYGVG--AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQL 188 (599)
T ss_pred HHHHhHHHHhhcC-----CcHHHHHHHHHHHHHh--hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHH
Confidence 9988888877632 2223333333333322 23333444568999999999887776654444444456666655
Q ss_pred HHHHhCcchhHHHHHHHHHHHHhheeE
Q 013779 391 LKELLGAENIFLLFAAIAFLAVLFIVR 417 (436)
Q Consensus 391 ~~~~~g~~~~~~~~~~~~~~~~~~~~~ 417 (436)
+....+|++.|++..+...++.+...+
T Consensus 189 ~~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 189 FAAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred hccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 555668999999988877776654433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-09 Score=101.27 Aligned_cols=163 Identities=17% Similarity=-0.030 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCCccEeehhhHHH
Q 013779 239 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVI-----GVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 313 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 313 (436)
.....+..+........+....|.+.++.+.++.+...+..+.. .+...++.++.|++.||+|||+.+..+..+.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~ 96 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM 96 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 33344444444444456777888888888776633333332221 2223467889999999999999999888888
Q ss_pred HHHHHHHHHHHHHHcCCchH-------HHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHH
Q 013779 314 ALSLLLLSAYYKILGGFPLV-------AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 386 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 386 (436)
.++..+.... ++... .+...-+..+.......+....+..|.+|+++|+++.++.+...++|..+++.
T Consensus 97 ~~~~~l~~~~-----~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~ 171 (434)
T PRK15075 97 ASGTLLIAFV-----PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL 171 (434)
T ss_pred HHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 7777766542 11110 11222223333333333444588999999999999999998888888777777
Q ss_pred hhHHH--------HHHhCcchhHHHHHH
Q 013779 387 AFSPL--------KELLGAENIFLLFAA 406 (436)
Q Consensus 387 ~~~~~--------~~~~g~~~~~~~~~~ 406 (436)
+.+.+ .+..||+..|++...
T Consensus 172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 172 LGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 66655 246789988876443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-09 Score=112.80 Aligned_cols=161 Identities=13% Similarity=0.023 Sum_probs=108.1
Q ss_pred hhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEe
Q 013779 228 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSA-AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 306 (436)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 306 (436)
..++++.++.++...++..+..... .....+....+.+.+. ....++..+.+.++..++.+++|+++||+|||+++
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l 80 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGH---KILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI 80 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHH---HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH
Confidence 3456666666665554444433221 1222233333333332 13357777888888999999999999999999998
Q ss_pred ehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHH
Q 013779 307 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 386 (436)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 386 (436)
..+..+..+..++...... ......+.+..++.+.......+...+++.|.+|+++|++++|+.+....+|..+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~ 157 (1146)
T PRK08633 81 RIVKLFEVGLTLLIVLAYY---LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTA 157 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHH
Confidence 8777665555444333221 1223344444444555555666777789999999999999999999999999999999
Q ss_pred hhHHHHHH
Q 013779 387 AFSPLKEL 394 (436)
Q Consensus 387 ~~~~~~~~ 394 (436)
+.+.+.+.
T Consensus 158 l~~~l~~~ 165 (1146)
T PRK08633 158 LFSFLFES 165 (1146)
T ss_pred HHHHHHHh
Confidence 99998876
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=100.32 Aligned_cols=134 Identities=20% Similarity=0.204 Sum_probs=106.8
Q ss_pred ccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 013779 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 83 (436)
Q Consensus 5 ~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 83 (436)
.+|.+.++ .|.+..+.+.+.+...++..++.++.|++.||+ +||+.+..+..+.+++.+.+.+.++.+... .-++.
T Consensus 219 ~lp~~~~~--~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 295 (355)
T TIGR00896 219 WLPAILIS--HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVL 295 (355)
T ss_pred HHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Confidence 35666666 799999999999999999999999999999999 566677778888888777666655433322 45678
Q ss_pred hhhhhhhhhhhhhHhhhcCc-ccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchH
Q 013779 84 GLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY 141 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~ 141 (436)
|++.+...|...+.+.+..+ +++++...++.+....+|..++|.+.+.+.+...+|.+
T Consensus 296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999888777765554 56678999999988999999999999998887645543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-10 Score=98.33 Aligned_cols=118 Identities=23% Similarity=0.361 Sum_probs=94.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHH-HHHHHHHHHHHhccchhHH---------------
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKRELII-AAVLYALGALTTAYAPGLG--------------- 74 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~~~~~~--------------- 74 (436)
+|++....+.+--...+...+.+++.|..+| ||||||.++. +..+..++.++.+++.++.
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 7888888899988999999999999999999 6999887655 6666777778888765543
Q ss_pred --HHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhh-HHHHHHHHHHHHHHHHHHHhhcc
Q 013779 75 --VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGT-LISLKELFIVLGILLGYFVGSFQ 132 (436)
Q Consensus 75 --~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~l~~~l~~~l 132 (436)
.+++.-.+.=++.........+++.|...+++|.+ +++++.....+|..+|..++++.
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 34444444555566777888999999997766666 99999999999999999998753
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.1e-09 Score=95.95 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=115.7
Q ss_pred hhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh----hcCCccEeehh-hHHHHHHHHHHHHHHHHH
Q 013779 253 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD----DLGRRPLLIGG-VCGIALSLLLLSAYYKIL 327 (436)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 327 (436)
+.....+.+.++++.|.+. ...+.......+..++..++.|+++| |+|||+.++.. .....++..++.......
T Consensus 20 ~~l~~~~l~~yl~~lg~~~-~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPH-AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 4456667777889999876 88899999999999999999999999 59999988765 444444444443321100
Q ss_pred --------cCCc----hHHHHHHHHHHHHhhcccccccchhccccCCcccc--chhhHHHHHHHHHHHHHHHHhhHHH--
Q 013779 328 --------GGFP----LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR--GRGISLAVLTNFGSNAIVTFAFSPL-- 391 (436)
Q Consensus 328 --------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~~~~~~~~~~-- 391 (436)
.... +..+....+..........|. .+++.|..|+++| +.+.++.+....+|+.+++.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~ 177 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL 177 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 0000 111222222333333333444 5899999998865 5789999999999999999988764
Q ss_pred HHHh-------------CcchhHHHHHHHHHHHHhheeEecccCC
Q 013779 392 KELL-------------GAENIFLLFAAIAFLAVLFIVRTVPETK 423 (436)
Q Consensus 392 ~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (436)
.+.. +.+..|.+.+++.+++.++..+..+|..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 2222 3466788888888888888877777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-10 Score=97.79 Aligned_cols=146 Identities=15% Similarity=0.109 Sum_probs=118.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccc
Q 013779 273 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 352 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (436)
.+.|++.....+..++.+++.|.+.||+|+|..+++++..+..+..++.+. +.+..+...=..-+.........
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg------~sy~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG------NSYPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc------chhHHHHHHHHHhhhhHHHHHhh
Confidence 689999999999999999999999999999999999999988888887752 23333333333334433344445
Q ss_pred cchhccccCCccc-cchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhheeEecccCCC
Q 013779 353 SWLMVSEIFPLRT-RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424 (436)
Q Consensus 353 ~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (436)
..+++++.+|++. |++++|+.-....+|-.+||++.|.++|..|++.+|++.++++++...+.++.++.++.
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 5689999999876 69999999999999999999999999999999999999999999988876666655443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.2e-10 Score=95.94 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccc
Q 013779 273 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 352 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (436)
..+|.+.+.+++...+.+...|.++||+|||.++..+.+..++...+.+. +.+...++..=+..|.+....+ +
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~------S~~F~afv~aR~l~Gi~kgnl~-v 140 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL------SRNFAAFVLARFLGGIFKGNLS-V 140 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhccCchH-H
Confidence 57899999999999999999999999999999999998888887666654 2334333333455555555555 4
Q ss_pred cchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH
Q 013779 353 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 393 (436)
Q Consensus 353 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 393 (436)
..++++|++++++|+.+++..+....+|-++||.+.|++..
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 55999999999999999999999999999999999999987
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=95.92 Aligned_cols=128 Identities=24% Similarity=0.233 Sum_probs=103.0
Q ss_pred cCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHH
Q 013779 6 SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLY 83 (436)
Q Consensus 6 ~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~ 83 (436)
.|.+.+ +.+|.++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+.+..++.
T Consensus 251 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 329 (448)
T PRK09848 251 SLFYVR-YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIA 329 (448)
T ss_pred heeeEe-eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Confidence 344443 23676666656555555778889999999999999999999999988888877776643 677777888899
Q ss_pred hhhhhhhhhhhhhHhhhcCccc-------chhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 013779 84 GLGIGLAMHGAPLYIAETCPSQ-------IRGTLISLKELFIVLGILLGYFVGSFQIN 134 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~l~~~l~~~l~~ 134 (436)
|+|.+...+...++.+|..|++ ++|...+..+....+|..+|+.+.+.+.+
T Consensus 330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754 35899999999999999999998887654
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-08 Score=88.63 Aligned_cols=136 Identities=18% Similarity=0.075 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhhHhh
Q 013779 20 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 99 (436)
Q Consensus 20 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 99 (436)
-..+.+.-+..+...+..+.+.+..+|+..+.-...+.+++.++.++.+++++.+.=+++-++.+++.|........+..
T Consensus 59 ~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~ 138 (402)
T PF02487_consen 59 VSTGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH 138 (402)
T ss_pred ccchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 33456777777888888889999999988766667777788889999999999999999999999999999988888755
Q ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcC
Q 013779 100 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 160 (436)
Q Consensus 100 ~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 160 (436)
.+++ ...+-+..+.+.+.++|+..-..+.....+-|..+++...+.++..+..+++
T Consensus 139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 139 -FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred -hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5553 3568888888888888888765555421144777777777766655555443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=101.79 Aligned_cols=155 Identities=18% Similarity=0.238 Sum_probs=140.9
Q ss_pred ccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG--RKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 5 ~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
.+|...++ .+.++.+.+.+.++..+...++.+..|+++|+.. ++.+..++++..+++.+.+++.++++.+...-.+
T Consensus 320 ~l~~~~~~--~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~ 397 (509)
T KOG2504|consen 320 YLPSYAKS--LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSIL 397 (509)
T ss_pred HHHHHHhh--cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45666666 8999999999999999999999999999999988 4556777889999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCC
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 161 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 161 (436)
.|+..|.........+.|..+.++-..+.|+.....+++.++||++++.+.+...+|...|+..++..++....++..+
T Consensus 398 fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 398 FGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999998888888899999999999999999999999999999999999988886699999999999988887777665
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.2e-09 Score=92.14 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=107.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 94 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 94 (436)
+|.++++.++..+.+..+..++.+..+++.||+|+||.+.++..+..++.++....++...+ ..-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999988888888777666555543333 35558899999999999
Q ss_pred hhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHH
Q 013779 95 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 149 (436)
Q Consensus 95 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~ 149 (436)
.+...+..|+ +.+++.++. ....+|.+++|++.|.+.+.. |.+..|++..+.
T Consensus 252 ~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~-g~~~a~~v~~~~ 303 (310)
T TIGR01272 252 FSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCL-GIQLAFALPVPC 303 (310)
T ss_pred HHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhc-cchHHHHHHHHH
Confidence 9999888864 455666765 566789999999999988877 788888754433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.4e-07 Score=83.99 Aligned_cols=116 Identities=5% Similarity=-0.076 Sum_probs=90.0
Q ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc-----h--------------------
Q 013779 18 SAVQLGLVVSGSLYGALLG-SILVYSIADFLGRKRELIIAAVLYALGALTTAYA-----P-------------------- 71 (436)
Q Consensus 18 s~~~~g~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~-------------------- 71 (436)
+.+.+.++.+...+..++. .++.+++++|++|++++-+....+.....++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4478999999998887777 9999999999999999887766666665555443 1
Q ss_pred ------hHHHHHHHHHHHhhhhhhhhh-hhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 013779 72 ------GLGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI 133 (436)
Q Consensus 72 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~ 133 (436)
+.|...+..+...+-...... .-..+..|.++.+|-.|..+++..+.++|.++++.+..++.
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444555555555554 67788999999999999999999999999999999888766
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=91.25 Aligned_cols=137 Identities=11% Similarity=0.019 Sum_probs=108.7
Q ss_pred hHHhchHHHHHhcCCCcchh-hHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchH
Q 013779 255 SVLYYAGPILQSAGFSAAAD-ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 333 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (436)
...+-.|.+.++.|.+. .+ .+.+...+..+..+..+.+|+++||+|.|+++..+.+...+...+..+. ....
T Consensus 44 n~s~a~p~L~~elglT~-~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa------~Sl~ 116 (511)
T TIGR00806 44 GESFITPYLLTVLNFTE-ETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG------TSVW 116 (511)
T ss_pred hHHHHHHHHHHHcCCCH-HHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 35556677778889987 56 8999999999999999999999999999999998888888877777753 1233
Q ss_pred HHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchh
Q 013779 334 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENI 400 (436)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 400 (436)
.+.++-++.|....... ....++...+|+++|+++.|+.+....+|.++++++.+. ....||+..
T Consensus 117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y 181 (511)
T TIGR00806 117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY 181 (511)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence 34444444444444444 556889999999999999999999999999999999998 556777654
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.2e-09 Score=92.07 Aligned_cols=139 Identities=37% Similarity=0.577 Sum_probs=113.7
Q ss_pred cccch--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchh--HHHHHHHHHHHhhhhhhh
Q 013779 15 FNLSA--VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG--LGVLLVGRLLYGLGIGLA 90 (436)
Q Consensus 15 ~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~ 90 (436)
++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+.+.+..+ .+.+++.|+.+|++.+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 111 (338)
T COG0477 32 LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGL 111 (338)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHH
Confidence 44444 57899999999999999999999999999998888888766666667766665 999999999999999999
Q ss_pred hhhhhhHhhhcCcc-cchhhHHHHHHH-HHHHHHHHHHHHhhccccc-cccchHHHhhhhHHHHHH
Q 013779 91 MHGAPLYIAETCPS-QIRGTLISLKEL-FIVLGILLGYFVGSFQINA-VGGWRYMYGLSAPLALLM 153 (436)
Q Consensus 91 ~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~l~~~l~~~l~~~-~~~w~~~f~~~~~~~~~~ 153 (436)
.+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+... ..+||..|..........
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 112 LPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 99999999999987 688999999888 5888888888777765544 227999666665555433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.9e-09 Score=93.77 Aligned_cols=144 Identities=19% Similarity=0.123 Sum_probs=108.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhc
Q 013779 269 FSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQI 347 (436)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (436)
++. .++.-+...+....-...+++|+++|| +|+|+.+..+.++++++.+++.... ......+...+.+.....+
T Consensus 58 ~~~-~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~----~~~~~gl~i~L~~I~iG~G 132 (498)
T COG3104 58 FDE-THATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS----VSGPGGLYIGLALIIVGTG 132 (498)
T ss_pred cCh-HhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc----cccccHHHHHHHHHHhccc
Confidence 776 555556666666667778999999999 5999999999999999999887531 0122233333333334455
Q ss_pred ccccccchhccccCCccc--cchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhheeE
Q 013779 348 SFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR 417 (436)
Q Consensus 348 ~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 417 (436)
..-+...+++.|++|++. |-.++++..+..++|+.++|.+.+++.+++||...|...++-+.++.+..+.
T Consensus 133 l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 133 LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 566677789999988654 6677888888899999999999999999999999999888888877765444
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-09 Score=97.17 Aligned_cols=144 Identities=15% Similarity=0.002 Sum_probs=119.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccc
Q 013779 273 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 352 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (436)
.+-+++.+....+.+++.+.++++.||+|.|+++..+.++.++..++...... ...+ .++.+=++.|.......|.
T Consensus 73 ~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~---~~~~-~~~~~R~lqGl~~g~~~pa 148 (466)
T KOG2532|consen 73 TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS---IGFY-LLLVLRFLQGLGQGVLFPA 148 (466)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---hcch-hhHHHHHHhHHHHhHHHhh
Confidence 67888999999999999999999999999999999999999988888877543 2223 3444444455444555566
Q ss_pred cchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH-hCcchhHHHHHHHHHHHHhheeEecc
Q 013779 353 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGAENIFLLFAAIAFLAVLFIVRTVP 420 (436)
Q Consensus 353 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 420 (436)
...+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||+..|++.+++.++..++.+.+..
T Consensus 149 ~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 149 IGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred hhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999999 99999999999998888776554443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-08 Score=90.29 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=126.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhh
Q 013779 16 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 95 (436)
Q Consensus 16 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 95 (436)
+.++...|.+.+...+.-++...+..++.+|+|.|+.++++.++.++=-.+++++++.+.+.+.+.+.|+-.+....+..
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcCcccchhhHHHH-HHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhc
Q 013779 96 LYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 159 (436)
Q Consensus 96 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~ 159 (436)
.++++.+|+|-.++...+ .+...++|..+.+.++|.+.+.. |.+..|++.+.+.+...++..+
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-GFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-CcHHHHHHHHHHHHHHHHHhee
Confidence 999999998887777777 47889999999999999999998 9999999988887776655543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.7e-08 Score=91.72 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=95.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHhhhhhhhhh
Q 013779 18 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----APGLGVLLVGRLLYGLGIGLAMH 92 (436)
Q Consensus 18 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~ 92 (436)
+....+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 5566777788778899999999999999999999998888776666554422 34567777888889999999999
Q ss_pred hhhhHhhhcCc-------ccchhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 013779 93 GAPLYIAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQINA 135 (436)
Q Consensus 93 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~ 135 (436)
...++++|..+ +++.|..++......-+|..+++.+.+++.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 23346689999999999999999988887643
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.3e-08 Score=88.76 Aligned_cols=148 Identities=19% Similarity=0.134 Sum_probs=114.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch---h-H--H---HHHHHHHHHhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP---G-L--G---VLLVGRLLYGL 85 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~-~--~---~l~~~r~l~G~ 85 (436)
-|++..+..+..........+..+++..+.||+|||+.++.+..+..+..+++.... + . | ..+++.++..+
T Consensus 300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~ 379 (485)
T KOG0569|consen 300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFII 379 (485)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999988888776532 1 1 1 22334444333
Q ss_pred hhhh-hhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHH-HHhcCCCC
Q 013779 86 GIGL-AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPS 163 (436)
Q Consensus 86 ~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~es 163 (436)
+.+. .-|...-+.+|.+|++.|+.++++......+...+-...-..+.+.. |- ..|+...+++.+..+ .+..+|||
T Consensus 380 ~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~-g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 380 SFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI-GP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred hhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 3222 35777888999999999999999999998888887777766666655 33 677777777776655 44579998
Q ss_pred h
Q 013779 164 P 164 (436)
Q Consensus 164 ~ 164 (436)
.
T Consensus 458 k 458 (485)
T KOG0569|consen 458 K 458 (485)
T ss_pred C
Confidence 5
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.9e-08 Score=88.56 Aligned_cols=148 Identities=24% Similarity=0.351 Sum_probs=119.8
Q ss_pred cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc-hhHHHHH----HHHHHHhhhhh
Q 013779 15 FN-LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-PGLGVLL----VGRLLYGLGIG 88 (436)
Q Consensus 15 ~~-~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~----~~r~l~G~~~~ 88 (436)
.| .+....+.+.+...+.-++.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+... +...++|+..+
T Consensus 237 ~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~ 316 (400)
T PF03825_consen 237 LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFG 316 (400)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHH
Confidence 55 677788888889999999999999999999999999999999999988888876 4544433 33457999999
Q ss_pred hhhhhhhhHhhhcCcccchhhHHHHHHH-HHHHHHHHHHHHhhccccccc-----cchHHHhhhhHHHHHHHHHHh-cCC
Q 013779 89 LAMHGAPLYIAETCPSQIRGTLISLKEL-FIVLGILLGYFVGSFQINAVG-----GWRYMYGLSAPLALLMGIGMW-SLP 161 (436)
Q Consensus 89 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~l~~~l~~~l~~~~~-----~w~~~f~~~~~~~~~~~~~~~-~~~ 161 (436)
....+...++.+..|++.|+++.++++. ..++|..+|..++|++.+... .|...+.+.+.+.++..+++. +.+
T Consensus 317 ~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 317 LFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999876 478999999999999988752 344556666666665555443 444
Q ss_pred C
Q 013779 162 P 162 (436)
Q Consensus 162 e 162 (436)
|
T Consensus 397 ~ 397 (400)
T PF03825_consen 397 P 397 (400)
T ss_pred C
Confidence 4
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.2e-09 Score=85.69 Aligned_cols=350 Identities=17% Similarity=0.166 Sum_probs=182.8
Q ss_pred ccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHh
Q 013779 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYG 84 (436)
Q Consensus 5 ~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 84 (436)
.+-.+-++ ++....|+|.+.-+..-..++...+.|.++|+-|||+.-+.-++.+.+++ +.-.++++-.++++|++-|
T Consensus 59 YvYyLYst--YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 59 YVYYLYST--YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGG 135 (454)
T ss_pred eeeeeehh--cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhh
Confidence 33344455 78889999999999888999999999999999999997665555555443 3445788999999999999
Q ss_pred hhhhhhhhhhhhH-hhhcCcccchhhHHHHHH--------HHHHHHHHHHHHHhhccccccc-cchHHHhhhhHHHHHHH
Q 013779 85 LGIGLAMHGAPLY-IAETCPSQIRGTLISLKE--------LFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMG 154 (436)
Q Consensus 85 ~~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~l~~~l~~~l~~~~~-~w~~~f~~~~~~~~~~~ 154 (436)
++.+..+.+.-++ ++|.- ++|+.---+.. .+..+-.+++.+.+..+.+... |--.+|-..+....+..
T Consensus 136 iaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigm 213 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGM 213 (454)
T ss_pred HHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 9999888887775 45543 23332222211 2333444555555555554431 33445554443333322
Q ss_pred -HHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCC
Q 013779 155 -IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 233 (436)
Q Consensus 155 -~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (436)
++.--..|. -.+..+.++ .. .+-+...+.+..+.
T Consensus 214 Avil~~W~EN---------------------------------ygdps~~kd---ll---------tqf~gaa~aiaSD~ 248 (454)
T KOG4332|consen 214 AVILSSWSEN---------------------------------YGDPSENKD---LL---------TQFKGAARAIASDE 248 (454)
T ss_pred HHHHhhhhhc---------------------------------cCChhhhHH---HH---------HHhhHhHHHHhcch
Confidence 221111110 000000000 00 00011122333333
Q ss_pred chhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc--cEeehhhH
Q 013779 234 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR--PLLIGGVC 311 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~ 311 (436)
+ ..+...+........+..+..|.|.+-.+.. ...-|.+.+.+....++|.-+..++..|-..| ..+.+.+.
T Consensus 249 k---i~LLG~iqsLFE~smytFVFLWTPaLspn~e---~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~ 322 (454)
T KOG4332|consen 249 K---IALLGAIQSLFEGSMYTFVFLWTPALSPNDE---EIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFL 322 (454)
T ss_pred H---HHHHHHHHHHHhhhhheeeeeecccCCCCcc---cCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHH
Confidence 2 2222333444444444455566665421111 13457788888888888888887776664443 23333333
Q ss_pred HHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhH
Q 013779 312 GIALSLLLLSAYYKIL--GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 389 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 389 (436)
.......+........ ..++...++.++.+-.+.+..+ |...-+-.+..|.+.|++.+-....=-++...++-. .
T Consensus 323 vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw-PSimkmRsqyIPEearstimNfFRvPLnifvClvLy--n 399 (454)
T KOG4332|consen 323 VSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW-PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLY--N 399 (454)
T ss_pred HHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc-hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhe--e
Confidence 3333333322222111 1223334455555555555444 444477788889988887655443222222222111 1
Q ss_pred HHHH--HhCcchhHHHHHHHHHHHHh
Q 013779 390 PLKE--LLGAENIFLLFAAIAFLAVL 413 (436)
Q Consensus 390 ~~~~--~~g~~~~~~~~~~~~~~~~~ 413 (436)
.-.+ ..+.+..|-+...+..++.+
T Consensus 400 lh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 400 LHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred cccccCccccchhhhhhHHHHHHHHH
Confidence 0011 22344666666666666544
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.2e-08 Score=95.32 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=112.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccc
Q 013779 273 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 352 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (436)
....+..+++.++..+|.++.|.++||+|||+++..+..+..++.+..++ ..+...+.++=++.+.+..+....
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~------a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF------APNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH------hCcHHHHHHHHHHHHhhccchhHH
Confidence 56778888899999999999999999999999999999998888866654 345555555656666666666667
Q ss_pred cchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhheeEecccC
Q 013779 353 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPET 422 (436)
Q Consensus 353 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (436)
.+.+..|.+++++|+.+..+ ......++.+++...+++.. +|++.+++......+..++ +++.+|.
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 77999999999999999999 88888888999999988887 7888888888877766655 3334343
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-08 Score=93.98 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=109.7
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc----------chhHHHHHHHHHH
Q 013779 13 TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY----------APGLGVLLVGRLL 82 (436)
Q Consensus 13 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l 82 (436)
+++|.++.+.|.......++.+++....+++.+|++.|+++.++.++.+++.+.... .++.+.+...-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 348999999999999999999999999999999999999999999999988866432 1344456667788
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 136 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~ 136 (436)
.+++.+....+...++.+..|+++++...++.....++|..+++.+++.+.+..
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999887655
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-09 Score=89.25 Aligned_cols=129 Identities=17% Similarity=0.256 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHH----HHHHHHHHHhhhhhhhhhhhhhHhhhcCcc
Q 013779 29 SLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG----VLLVGRLLYGLGIGLAMHGAPLYIAETCPS 104 (436)
Q Consensus 29 ~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 104 (436)
..+...-|.++.+++.||+|||+.+..+.+++++..++.....+-. ++..+|++. .+.+.+.+.|..|.+|.
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPT 465 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPT 465 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccch
Confidence 3455667889999999999999999999999999998887765433 344555554 44566888899999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcCCCCh
Q 013779 105 QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 164 (436)
Q Consensus 105 ~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es~ 164 (436)
+-|+...|..+...-+|.++.|+++ ...+. +-..+..+.+..+++..+...++|-.+
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheeeeecc
Confidence 9999999999999999999999998 33333 445667777888888888887777544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-07 Score=87.91 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHhhhhhhhhhhhhhH
Q 013779 20 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY--APGLGVLLVGRLLYGLGIGLAMHGAPLY 97 (436)
Q Consensus 20 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 97 (436)
+..+.+.....+...++.+++++++||+|+|+.+..+.++.+++.....+ .++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888899999999999999999998887766654433222 3577778888899999999999999999
Q ss_pred hhhcCcc-------cchhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 013779 98 IAETCPS-------QIRGTLISLKELFIVLGILLGYFVGSFQINAV 136 (436)
Q Consensus 98 i~~~~~~-------~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~ 136 (436)
++|..+. ++.|...+..+....+|..+|+.+++.+.+..
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998762 23466788888899999999999998876544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.8e-08 Score=80.85 Aligned_cols=145 Identities=19% Similarity=0.158 Sum_probs=109.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHhhhhhhhhh
Q 013779 14 WFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL-YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 92 (436)
Q Consensus 14 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 92 (436)
.||+|+...+.+.+....-.++.+++.|.++||+|++-+.+.+..+ ..++-....++ ++.=+....+.|++....-.
T Consensus 294 rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAc 371 (459)
T KOG4686|consen 294 RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLAC 371 (459)
T ss_pred hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHH
Confidence 4899999999999999999999999999999999999877765444 44444444442 23334566678888776666
Q ss_pred hhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchH--HH-hhhhHHHHHHHHHHhcC
Q 013779 93 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY--MY-GLSAPLALLMGIGMWSL 160 (436)
Q Consensus 93 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~--~f-~~~~~~~~~~~~~~~~~ 160 (436)
.....++...|+++.|++.+..+...++|-.+.|++++++.+...++.+ +| +..+.+++....+.+.+
T Consensus 372 slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 372 SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 6777888889999999999999999999999999999999987643433 33 33444444444444443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.6e-08 Score=81.49 Aligned_cols=140 Identities=19% Similarity=0.090 Sum_probs=97.0
Q ss_pred ChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCc
Q 013779 252 GQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP 331 (436)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (436)
..+.+..|.|.+-++.+++. .+...+.....++..+ +++.|.+.|++|++.++.++.....++...+.......-...
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq-~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~ 94 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQ-SQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSL 94 (250)
T ss_pred cccchhhhhHHHHHHhCCCH-HHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCcc
Confidence 44567789999888888887 7778888888888776 588899999999999999999999998887766543221112
Q ss_pred hHHHHHHHHHHHHhhccc-ccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 013779 332 LVAVSALLLYVGCYQISF-GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 394 (436)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 394 (436)
.....+...+.++.+.++ .........+.+| ++||++.|+.-....+++++...+...+.+.
T Consensus 95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred chHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 222223333333222222 2222233446788 6899999999999888888877777666554
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-08 Score=90.53 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=112.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccc
Q 013779 273 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 352 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (436)
.+.+...+.+.++.+++.+.++.+.||++..+.+.. +.++..++.+.... .++...+.+.-++.|.+..+..|.
T Consensus 81 ~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~----~~~~w~~~~~~~~~--~~s~~~~ialr~llGl~es~~wP~ 154 (495)
T KOG2533|consen 81 NQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSV----SGILWGLFGFLTAA--VHSFPGLIALRFLLGLFESGGWPG 154 (495)
T ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHH----HHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHhcccchH
Confidence 678889999999999999999999999994443333 33322222211110 234555566666777777777777
Q ss_pred cchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHH------HHhCcchhHHHHHHHHHHHHhheeEecccCC
Q 013779 353 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK------ELLGAENIFLLFAAIAFLAVLFIVRTVPETK 423 (436)
Q Consensus 353 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (436)
...++...+.+++|+.-+|+.+...++|+++|+.+...+. ...||++.|++-+++.++.++++++++|+..
T Consensus 155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 7799999999999999999999999999999999988764 3568999999999999999998888887653
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.8e-08 Score=82.03 Aligned_cols=376 Identities=16% Similarity=0.155 Sum_probs=219.0
Q ss_pred ccCcccCccccccchhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 013779 5 QSPELSGTTWFNLSAVQLG-LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 83 (436)
Q Consensus 5 ~~p~i~~~~~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 83 (436)
+.|.+.. .+-|++..|+. -+.-...-.+.+.-.+.=.+.|-.-.|++++.-.+.......+.-+.++.+.+=+.-++.
T Consensus 27 ~tpyl~g-p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~Fy 105 (433)
T KOG3810|consen 27 LTPYLLG-PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFY 105 (433)
T ss_pred cchhccC-CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhc
Confidence 3444443 22577776654 333344445667777777889999899998887777777778888899999999999999
Q ss_pred hhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccc-cchHHHhhhhHHHHHHHHHHhcCCC
Q 013779 84 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMWSLPP 162 (436)
Q Consensus 84 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-~w~~~f~~~~~~~~~~~~~~~~~~e 162 (436)
|...+ ...+.++++-+..+|+++.++.+...+..-.|...|..++..++.... +....-.+......+.....+++|.
T Consensus 106 G~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~ 184 (433)
T KOG3810|consen 106 GPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPR 184 (433)
T ss_pred ChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCC
Confidence 99866 667888999999999999999999999999999999999888776531 3333334433333444455567776
Q ss_pred ChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHHH
Q 013779 163 SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG 242 (436)
Q Consensus 163 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (436)
.+|-+.-+..+++ ....+.+..++ +.+..+..+ ..-..-...+.+..++|.....-
T Consensus 185 v~rSl~f~~~~~~-----------~~v~~~e~~~~--~~~~~~~l~--------~~~~~l~~~l~~~y~np~ll~WS--- 240 (433)
T KOG3810|consen 185 VKRSLYFHRLEDK-----------ISVGDLEEMNP--QASYMSYLR--------GAFVLLWRDLQECYSNPRLLKWS--- 240 (433)
T ss_pred Cchhhhhhccccc-----------ceeccchhcCc--cchhhHHHH--------HHHHHHHHHHHHHhcCchhhhhH---
Confidence 6543322111100 00000000000 000000000 00001112344556666554433
Q ss_pred HHHHHHHHhChhhHHhchHHHHHhcC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHH
Q 013779 243 GLVLFQQITGQPSVLYYAGPILQSAG-FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 321 (436)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 321 (436)
+.+.....++.-+.+|...+.++.. .+.....|..-+...+.+.++.+..|.+.-++.|+.-+.++.....-+.+++.
T Consensus 241 -lWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~ 319 (433)
T KOG3810|consen 241 -LWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFI 319 (433)
T ss_pred -HHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhh
Confidence 2333333344456777777777763 22223345555666677778888888886666665444333332222222222
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC-----
Q 013779 322 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG----- 396 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g----- 396 (436)
.. ...+.|+......++...+........ .-+++....+.-|..+|+..++.-+-..+-..+ ..|..|
T Consensus 320 m~---~t~~Iw~~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~i 392 (433)
T KOG3810|consen 320 MA---QTQHIWVCYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDI 392 (433)
T ss_pred hh---cccceehhhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCc
Confidence 21 224456666666777677766555333 444555577888999999877655544443333 223222
Q ss_pred ------cchhHHHHHHHHHHHHhh
Q 013779 397 ------AENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 397 ------~~~~~~~~~~~~~~~~~~ 414 (436)
+..-|.+.+++.+++...
T Consensus 393 r~Q~~~Y~~Yf~v~~~i~~~~~~~ 416 (433)
T KOG3810|consen 393 RTQFVVYSSYFIVLGVIFLIGFGI 416 (433)
T ss_pred ceeEEEEeehHHHHHHHHHHHHHH
Confidence 334577777777777654
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-07 Score=81.04 Aligned_cols=155 Identities=12% Similarity=0.004 Sum_probs=112.7
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (436)
.....|.+.+....+. .+++++...+..+..+..+..+++.+|+|+|+-++.++.++++++.++..... ...+...
T Consensus 32 ~diLip~l~~~f~ls~-~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~---~~~y~~F 107 (422)
T COG0738 32 NDILIPHLKEVFDLTY-FEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS---SKSYGFF 107 (422)
T ss_pred chhhHHHHHHHhCccH-HHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh---hhhHHHH
Confidence 4445666656666666 89999999999999999999999999999999999999999999888764332 1222222
Q ss_pred HH-HHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH-------------------h
Q 013779 336 SA-LLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-------------------L 395 (436)
Q Consensus 336 ~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-------------------~ 395 (436)
+. +++...+.+ ......+.++..+.|++..+.-+.+.+.++.+|..++|.+.+.+..+ .
T Consensus 108 L~~lFila~Gi~-~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~ 186 (422)
T COG0738 108 LVALFILASGIG-LLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADAS 186 (422)
T ss_pred HHHHHHHHhhhH-HHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 22 222222222 23334457888888888888889999999999999999999988772 1
Q ss_pred CcchhHHHHHHHHHHHHhhe
Q 013779 396 GAENIFLLFAAIAFLAVLFI 415 (436)
Q Consensus 396 g~~~~~~~~~~~~~~~~~~~ 415 (436)
.++.++...+...++..+..
T Consensus 187 ~v~~pYl~~~~~lvll~v~~ 206 (422)
T COG0738 187 SVQFPYLILAGLLVLLAVLI 206 (422)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 25567777776666655543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.6e-07 Score=88.67 Aligned_cols=139 Identities=17% Similarity=0.082 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccch
Q 013779 276 TRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWL 355 (436)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (436)
+++.+...++..++.++.|+++|++|||+.+..+.+...++.++.... .+.......=++.+.+.+.. ..+...
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-----~~~~~l~~GR~l~G~g~G~~-~~~~pi 165 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-----PSWYQLIVGRILTGLGVGGA-SVLAPV 165 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhccchhhh-hhcchh
Confidence 789999999999999999999999999999999999999988888764 23333333333343333333 344558
Q ss_pred hccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHh--CcchhHHHHHHHHHHHHhheeEecccC
Q 013779 356 MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL--GAENIFLLFAAIAFLAVLFIVRTVPET 422 (436)
Q Consensus 356 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (436)
+.+|..|++.||...+..+....+|..++ .+.+...+.. +|+..+.+..+.+++..+. .++.||+
T Consensus 166 y~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 166 YISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 99999999999999999998888776666 5566665543 7887777776666666655 5555654
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-08 Score=67.21 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=69.0
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLL 77 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 77 (436)
+.|++|.+++| .++|.++.|++.+.+++||.+|.+....+.++..+++.+..+.+...+..+.+++.++.+.+.
T Consensus 11 yTplLP~M~~~--~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 11 YTPLLPLMQAD--GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHhHhHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 46899999999 899999999999999999999999999999999999999999999999999999998877653
|
Note that many members are hypothetical proteins. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-07 Score=80.67 Aligned_cols=151 Identities=26% Similarity=0.228 Sum_probs=122.1
Q ss_pred cCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHh
Q 013779 6 SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYG 84 (436)
Q Consensus 6 ~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 84 (436)
+|.+..| -|+|+.+.|++.+...+.....++....+++|. .+|+..+...+++.++...+.+.+.-..+.- -++.|
T Consensus 231 LP~ili~--~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG 307 (395)
T COG2807 231 LPAILID--RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLG 307 (395)
T ss_pred HHHHHHH--cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHh
Confidence 5777777 899999999999999999999999999999976 4566666677777777777767664333333 48999
Q ss_pred hhhhhhhhhhhhHhhhcCcc-cchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhc
Q 013779 85 LGIGLAMHGAPLYIAETCPS-QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 159 (436)
Q Consensus 85 ~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~ 159 (436)
+|.|..+|....++.+-.++ ++-++..++.+....+=...||.+.|++.|...+|+...+......++..+.-+.
T Consensus 308 ~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 308 LGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred CccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999888764 4456677777777777778899999999998889999998888887777665553
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.4e-06 Score=75.25 Aligned_cols=303 Identities=12% Similarity=-0.025 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcc---c-ccc-ccchH--HHh
Q 013779 72 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ---I-NAV-GGWRY--MYG 144 (436)
Q Consensus 72 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l---~-~~~-~~w~~--~f~ 144 (436)
.++..++.-++.|++.+........+.+. +|++ .+..+..+.+++++++.++--.. . +.. ..++. -|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 57777788889999999888888887774 6643 34444555566655555442221 1 110 01222 233
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCC----CCcchhh-hHHHHHHhhhhcccc
Q 013779 145 LSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPP----GDKLSER-QIEDTLVSLKSSYTD 219 (436)
Q Consensus 145 ~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~ 219 (436)
+..++.++.++....++..|......+...+.+ +++ ++..+...+....++ .++.+.. +...+.+.+.++.++
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPFARYYLQKKLDKG-AGE-DETKGELRSKAEQNGIPHGGDQPSPTLVLDWEKEPESPDEPQ 257 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHhhcccc-ccc-ccccccccccccccccccccccccccccccccccccCCccch
Confidence 344444444455556666664221111100000 000 000000000000000 0000000 000000000001111
Q ss_pred ccccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013779 220 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 299 (436)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 299 (436)
.+.+.+.++++|+ .|...+..++.++.....+..+...... .+.+.++....-.....+.++..+|+.+..+.. .
T Consensus 258 ~~~~~~~~~v~kk--i~~~~~~vf~~F~vTL~vFPgv~~~i~~--~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~ 332 (437)
T TIGR00939 258 KPLKTSVWVVFTK--VWLLAFSVVFVFTVTLSVFPAITTAVTS--SGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-W 332 (437)
T ss_pred hcccCcHHHHHHH--HHHHHHHHHHHHHHHHHhcCceEEEeec--cCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-e
Confidence 1223455555553 3445555555555554433333322111 111122212445667778888899988664431 1
Q ss_pred cCCc-cEeehhhHHHHHHHHHHHHHHHHH-------cCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhH
Q 013779 300 LGRR-PLLIGGVCGIALSLLLLSAYYKIL-------GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS 371 (436)
Q Consensus 300 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 371 (436)
-++| +.+.+..+.=.+...++.+....+ -.+.+..++ ..+..+...+-.......+..+..++++|..+..
T Consensus 333 p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~-~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~ 411 (437)
T TIGR00939 333 PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFII-LMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGA 411 (437)
T ss_pred eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHH-HHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 1222 122222222222222211110000 012222332 3333333333344455567777788888888888
Q ss_pred HHHHHHHHHHHHHHHh
Q 013779 372 LAVLTNFGSNAIVTFA 387 (436)
Q Consensus 372 ~~~~~~~~g~~~~~~~ 387 (436)
+....-.+|...|..+
T Consensus 412 ~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 412 LMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8777777777766654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=88.76 Aligned_cols=116 Identities=21% Similarity=0.240 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHHhhhhhhhhhhhhhH
Q 013779 20 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMHGAPLY 97 (436)
Q Consensus 20 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~ 97 (436)
...+....+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 6778888899999999999999999999999999999999999999988876 99999999999999999999999999
Q ss_pred hhhcCcc-------cchhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 013779 98 IAETCPS-------QIRGTLISLKELFIVLGILLGYFVGSFQINA 135 (436)
Q Consensus 98 i~~~~~~-------~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~ 135 (436)
++|..+. ++.|..++..+....+|..+++.+.+.+.+.
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9998873 3358899999999999999999988876543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.7e-07 Score=69.17 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=97.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhh
Q 013779 16 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 95 (436)
Q Consensus 16 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 95 (436)
++++..--.-.++......+..++.+.+.+++|.|+.++++.+.+.+-... -+-++.+.++.+-++.|++.+..+++..
T Consensus 33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg 111 (156)
T PF05978_consen 33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQG 111 (156)
T ss_pred cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhh
Confidence 344444445566677778888899999999999999999999988754444 3567889999999999999999999999
Q ss_pred hHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 013779 96 LYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 132 (436)
Q Consensus 96 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l 132 (436)
.++.+..++++|++-.+++......+.++|.++...+
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988876554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.9e-08 Score=87.32 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=129.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 94 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 94 (436)
.+-.+...|........+-++.-++.+++..|+|+-+++..++....+=.+..++.+|.|..+..-+++|+..+..+.+.
T Consensus 401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~ 480 (618)
T KOG3762|consen 401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI 480 (618)
T ss_pred cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence 56667777778888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCcccchhhHHHHHHH-HHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhc
Q 013779 95 PLYIAETCPSQIRGTLISLKEL-FIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 159 (436)
Q Consensus 95 ~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~ 159 (436)
.+|+++..||+-|..+-++.+. ..++|--+|.++|+.+.+.+ +=|..|...++.+++..+....
T Consensus 481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-g~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-GARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754 57889999999999999888 8899999998888877665543
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.2e-05 Score=73.85 Aligned_cols=143 Identities=20% Similarity=0.153 Sum_probs=112.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHhccch----------------------
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP---------------------- 71 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~---------------------- 71 (436)
+|.+...+.-..+.+.-......+.++.++|-| ||-+++.++.++..++..+...+.
T Consensus 68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~ 147 (571)
T KOG1237|consen 68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP 147 (571)
T ss_pred hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence 677777788888888888888999999999965 898999988888887755443321
Q ss_pred ---hHHHHHHHHHHHhhhhhhhhhhhhhHhhhcCc---cc---chhhHHHHHHHHHHHHHHHHHHHhhccccccccchHH
Q 013779 72 ---GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCP---SQ---IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 142 (436)
Q Consensus 72 ---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~ 142 (436)
....++.+.-+..+|.|+.-|...++-+|.++ ++ ++...+.++....+.|..++..+..+.-+.. +|.+-
T Consensus 148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lg 226 (571)
T KOG1237|consen 148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLG 226 (571)
T ss_pred chHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceee
Confidence 12367777888889999999999999999998 32 2246888999999999999998888865555 99999
Q ss_pred HhhhhHHHHHHHHHHh
Q 013779 143 YGLSAPLALLMGIGMW 158 (436)
Q Consensus 143 f~~~~~~~~~~~~~~~ 158 (436)
|.+......+..++++
T Consensus 227 f~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 227 FGIPTVLNALAILIFL 242 (571)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9988877766655443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=81.38 Aligned_cols=186 Identities=20% Similarity=0.143 Sum_probs=128.5
Q ss_pred CchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHH----HHHHHHHHHHHHHHHhhcCCccEeeh
Q 013779 233 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVI----GVFKLVMTWIAVAKVDDLGRRPLLIG 308 (436)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~l~d~~~~~~~~~~ 308 (436)
...+......++..+.............+......+.......+...... ++..++.....|.++||+|||..+..
T Consensus 18 ~~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~ 97 (463)
T KOG2816|consen 18 ASMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLL 97 (463)
T ss_pred chhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHH
Confidence 33444555555666655554433333333333333333223344444433 67888889999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhh
Q 013779 309 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 388 (436)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 388 (436)
....+.+....+.+. .++.+. ..-..+++.... ....++++|....+.|....|+.+.....+..++|.+.
T Consensus 98 ~~~~~~l~~~~~~~~-------~~~~~~-~~~l~g~~~~~~-s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~ 168 (463)
T KOG2816|consen 98 PLFGTILPALCLLFQ-------GYWFFL-LLGLSGGFSAIF-SVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALG 168 (463)
T ss_pred HHHHHHHhHHHHHHH-------HHHHhh-hcccccchhhhh-hhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 887777766665542 133222 222333333333 35568999999999999999999999999999999999
Q ss_pred HHHHHHhCcchhHHHHHHHHHHHHhheeEecccCCCCCH
Q 013779 389 SPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSL 427 (436)
Q Consensus 389 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (436)
+.+.+..|...++.+..+..++..+......||+..++.
T Consensus 169 ~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 169 GYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 999999999999999999999998888888888754443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.4e-06 Score=72.81 Aligned_cols=338 Identities=13% Similarity=0.001 Sum_probs=177.3
Q ss_pred ccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHH-HHHHHHHHHHHhcc---------
Q 013779 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIAD-----FLGRKRELII-AAVLYALGALTTAY--------- 69 (436)
Q Consensus 5 ~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~l~~-~~~~~~~~~~~~~~--------- 69 (436)
.+|.+-+. =|.|.++.+...-++. ---.-+.|.++.| |+||||..++ +..+.+....+.+.
T Consensus 52 ~iP~lL~a--k~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~n 127 (510)
T KOG3574|consen 52 AIPLLLQA--KGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGN 127 (510)
T ss_pred hhHHHhcC--CCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccC
Confidence 56777775 5778777766543322 1234578889999 9999986443 44444444443332
Q ss_pred --chhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccc------cccch-
Q 013779 70 --APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA------VGGWR- 140 (436)
Q Consensus 70 --~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~------~~~w~- 140 (436)
.++...+...-++.-+..+....+.-.+.-....+++.|.+......+.+.|..++..+--.+-.. ..+|.
T Consensus 128 g~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~ 207 (510)
T KOG3574|consen 128 GGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPL 207 (510)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcC
Confidence 234444555556667777777788888888888899999998888888888888877654333220 11232
Q ss_pred --------HHHhhhhHHHHHHHHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHh
Q 013779 141 --------YMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVS 212 (436)
Q Consensus 141 --------~~f~~~~~~~~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (436)
.-.++.+...++.-.+..+..+++.. +..|
T Consensus 208 ~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~-------------~~~~----------------------------- 245 (510)
T KOG3574|consen 208 DQGFITLAGYLWFWGALFIVATTLVALLKKENDE-------------SVDE----------------------------- 245 (510)
T ss_pred ccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCch-------------hhhh-----------------------------
Confidence 12334444444444444433332210 0000
Q ss_pred hhhccccccccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHH
Q 013779 213 LKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWI 292 (436)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (436)
+++...+...+-++++++-|..+.+.......=+... .-....+.-+-+.|.+. ...++...+..-..++....
T Consensus 246 -e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~----a~da~t~LkLle~Gv~k-e~Lal~~v~~~plqI~l~~~ 319 (510)
T KOG3574|consen 246 -ELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQ----AADALTSLKLLEHGVPK-EELALIAVPLVPLQIALPLY 319 (510)
T ss_pred -hhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhh----hhhhccchHHHHcCCCh-hHheeeeeehhhHHHhhhhh
Confidence 0000011112235667777766655543333322221 23334455567788877 45555444444444555544
Q ss_pred HHHHHhhcCCccEee------hhhHHHHHHHHHHHHHHHHHcC---C-c--hHHH-HHHHHHHHHhhcccccccchhccc
Q 013779 293 AVAKVDDLGRRPLLI------GGVCGIALSLLLLSAYYKILGG---F-P--LVAV-SALLLYVGCYQISFGPISWLMVSE 359 (436)
Q Consensus 293 ~g~l~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~-~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 359 (436)
.|+++.. +|++.. .-.. .......+.+....... . + ...+ +..-.+...+.........+..++
T Consensus 320 ~gk~ta~--~~pl~~~lka~~~R~~-~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aq 396 (510)
T KOG3574|consen 320 IGKWTAG--PRPLNVFLKAVPYRLG-GGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQ 396 (510)
T ss_pred heeecCC--CCcchHHHHhhhHHHH-HHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence 4444332 222111 1111 11111222221111111 1 1 1111 111122222221222223377788
Q ss_pred cCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCc
Q 013779 360 IFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGA 397 (436)
Q Consensus 360 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~ 397 (436)
+.|+...|+.+.+.|+..++|+---..+..++.|..++
T Consensus 397 isdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv 434 (510)
T KOG3574|consen 397 ISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTV 434 (510)
T ss_pred cCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence 99999999999999999999988877788888776543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.3e-06 Score=75.51 Aligned_cols=121 Identities=25% Similarity=0.360 Sum_probs=102.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHHhhhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMH 92 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~ 92 (436)
+|-++.+..+.......+..++.+++.++++|+|+|+++.++.++..++.++.-+.+ +.+.+++..++.+++.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 556667777888888888888899999999999999999999999999999988865 788999999999999999999
Q ss_pred hhhhHhhhcCcc-------cchhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 013779 93 GAPLYIAETCPS-------QIRGTLISLKELFIVLGILLGYFVGSFQINA 135 (436)
Q Consensus 93 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~ 135 (436)
...++++|..+- +.-|...+......=+|..++..+.++....
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887642 3347788888888888998888887776543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-05 Score=74.02 Aligned_cols=108 Identities=21% Similarity=0.350 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHhccc---hh------HHHHHHHHHHHhhhhhhhhhhhhhHhhhcCccc---chhhHHHHHHHHH
Q 013779 51 RELIIAAVLYALGALTTAYA---PG------LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ---IRGTLISLKELFI 118 (436)
Q Consensus 51 ~~l~~~~~~~~~~~~~~~~~---~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 118 (436)
|++.++.++..+|.++..++ ++ .+.++++..+.++|.|+.-|...++++|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888888888884443 22 368899999999999999999999999999765 5678889999999
Q ss_pred HHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhc
Q 013779 119 VLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 159 (436)
Q Consensus 119 ~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~ 159 (436)
++|..++..+.+++-++. +|.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~-~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNY-GWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhcccc-chhhhhhHHHHHHHHHHHHHHh
Confidence 999999999999988777 9999999999888877665554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-05 Score=68.75 Aligned_cols=155 Identities=19% Similarity=0.069 Sum_probs=96.9
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 013779 262 PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLY 341 (436)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (436)
...+++|++. .+.+.+.........+.+.+.|.++||+|||+..+...++..++++.-- .+....+..-=+.
T Consensus 59 ~LY~~yg~~~-~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-------~~~~~~L~~GRvl 130 (354)
T PF05631_consen 59 ALYESYGFSE-HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-------SSNYPVLLLGRVL 130 (354)
T ss_pred HHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHH
Confidence 3456788887 7788888888888899999999999999999987777777776665432 2333333333333
Q ss_pred HHHhhcccccccch-hccc----cCCccccchhhHHHHH-HHHHHHHHHHHhhHHHHHHhCc--chhHHHHHHHHHHHHh
Q 013779 342 VGCYQISFGPISWL-MVSE----IFPLRTRGRGISLAVL-TNFGSNAIVTFAFSPLKELLGA--ENIFLLFAAIAFLAVL 413 (436)
Q Consensus 342 ~~~~~~~~~~~~~~-~~~~----~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~ 413 (436)
.+..........-+ ++.| -+|++..+..++.... .+.+-.+.+..+...+.+..+. ..+|.....+.+++.+
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~ 210 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV 210 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 33322222221111 2222 3465555555555542 2344455556666666776654 7789888888888887
Q ss_pred heeEecccCCC
Q 013779 414 FIVRTVPETKG 424 (436)
Q Consensus 414 ~~~~~~~~~~~ 424 (436)
++....+|..+
T Consensus 211 ~I~~~W~ENyg 221 (354)
T PF05631_consen 211 LILKTWPENYG 221 (354)
T ss_pred HHHhcccccCC
Confidence 76655666543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.8e-06 Score=77.64 Aligned_cols=165 Identities=16% Similarity=0.102 Sum_probs=100.6
Q ss_pred HHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh----cCCccEe-ehhhHHHHHHHHHHHHHHHHHcC
Q 013779 256 VLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD----LGRRPLL-IGGVCGIALSLLLLSAYYKILGG 329 (436)
Q Consensus 256 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 329 (436)
...|+..++.+ .|.++ ...+.+..+.-+...+.-++.|.++|| +||||.. .++...++++..++.........
T Consensus 28 ~~~~l~~fyt~~~Gl~~-~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~ 106 (460)
T PRK11462 28 VMLYMMFFYTDIFGIPA-GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMN 106 (460)
T ss_pred HHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcc
Confidence 44455555544 67766 788999999999999999999999997 4666554 44555555555443321100001
Q ss_pred C-chHHHHHHHHHHHHhhcccccccchhccccCC-ccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC-------cchh
Q 013779 330 F-PLVAVSALLLYVGCYQISFGPISWLMVSEIFP-LRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-------AENI 400 (436)
Q Consensus 330 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-------~~~~ 400 (436)
. ..+......++..++.....|-. ++..|..+ +++|++..+.......+|..+++.+..++.+..| |...
T Consensus 107 ~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~ 185 (460)
T PRK11462 107 GKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGG 185 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence 1 12223333334444444444433 67777765 6789999999999999988888887766665543 3334
Q ss_pred HHHHHHHHHHHHhheeEecccC
Q 013779 401 FLLFAAIAFLAVLFIVRTVPET 422 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~ 422 (436)
..+.+++.+++..+++...+|+
T Consensus 186 ~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 186 IAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHHHHHHHHHHhcceec
Confidence 4455555555554444444544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-08 Score=95.72 Aligned_cols=145 Identities=18% Similarity=0.061 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhccccccc
Q 013779 274 DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 353 (436)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (436)
..++..+...++..+|.++.|+++||+|||+.+..+..+..++.++...... ..+...+...-++.|.......+..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS---YNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccc
Confidence 4577888888999999999999999999999999999988888877765311 0133333333344444444445566
Q ss_pred chhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHh---CcchhHHHHHHHHHHHHhheeEecccC
Q 013779 354 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL---GAENIFLLFAAIAFLAVLFIVRTVPET 422 (436)
Q Consensus 354 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (436)
..++.|..|+++|+...++.+....+|..++..+.-...+.. +|+..+...++..++..+ ...+.||+
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pES 194 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 689999999999999999988888788776666543332322 377777666666554443 33445543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.7e-06 Score=75.55 Aligned_cols=157 Identities=12% Similarity=-0.012 Sum_probs=106.0
Q ss_pred HHHh--cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-ccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 013779 263 ILQS--AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR-RPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALL 339 (436)
Q Consensus 263 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (436)
|+++ .+-+. ...|+..+...++..++.+..++...|.++ |+.++.+.+++.++.++.......+++ ...+....
T Consensus 60 Yl~~lD~~A~~-~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~--~~y~mL~~ 136 (488)
T KOG2325|consen 60 YLQKLDPTATA-TFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG--VKYLMLVA 136 (488)
T ss_pred hhhhcCCCCCc-chhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc--hHHHHHHH
Confidence 4555 34433 678999999999999999999999999886 778888999999888887544332222 22222222
Q ss_pred HHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH-------------hCcchhHHHHHH
Q 013779 340 LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-------------LGAENIFLLFAA 406 (436)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-------------~g~~~~~~~~~~ 406 (436)
=+..+.+.+.......|+++..-.+.|.++++..+....+|..+||.+...+... .-|..+-++.++
T Consensus 137 R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i 216 (488)
T KOG2325|consen 137 RILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAI 216 (488)
T ss_pred HHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHH
Confidence 2223333333445568888877778888888888877777777777765443311 114566777787
Q ss_pred HHHHHHhheeEecccC
Q 013779 407 IAFLAVLFIVRTVPET 422 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~ 422 (436)
+.++..++.....+|.
T Consensus 217 ~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 217 LWIIYIVIILFFFKEV 232 (488)
T ss_pred HHHHHHHHHHhheeec
Confidence 8777777666666654
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.3e-05 Score=68.98 Aligned_cols=145 Identities=23% Similarity=0.199 Sum_probs=121.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHhhhhhh
Q 013779 14 WFNLSAVQLGLVVSGSLYGALLGSILVYSIAD-FLGRKRELIIAAVLYALGALTT---AYAPGLGVLLVGRLLYGLGIGL 89 (436)
Q Consensus 14 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~ 89 (436)
-||+|..|...+......|..++....|++.. |.++|+.-.+++....++..+. +...+.+.+...-++.|++.|.
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~ 317 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL 317 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence 48999999999999999999999999999888 7788888888888887776654 4456889999999999999999
Q ss_pred hhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccc---------ccchHHHhhhhHHHHHHHHHHh
Q 013779 90 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV---------GGWRYMYGLSAPLALLMGIGMW 158 (436)
Q Consensus 90 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~---------~~w~~~f~~~~~~~~~~~~~~~ 158 (436)
......+...|..++++.|..+|.+.....++..++..+++.+.|.. .++-.+|.+.++..++.+.+..
T Consensus 318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988765421 1566667776666665554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.6e-05 Score=70.96 Aligned_cols=125 Identities=16% Similarity=0.056 Sum_probs=71.8
Q ss_pred ccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHH-HHHHHHHHHHHhccch-------
Q 013779 5 QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIAD-----FLGRKRELII-AAVLYALGALTTAYAP------- 71 (436)
Q Consensus 5 ~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~l~~-~~~~~~~~~~~~~~~~------- 71 (436)
.+|.+.++..-+.|.+|.|...-+ ...+ -.-++|.++.| |+||||..++ ...+.++..+..+..-
T Consensus 22 siPflL~~~~~~~sy~q~~~fSla-~~Pf-SlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~ 99 (544)
T PF13000_consen 22 SIPFLLQSMAKKVSYSQQAIFSLA-SYPF-SLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFD 99 (544)
T ss_pred cchhhhccccCCCChhHheeeeee-echh-HHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHhccchhhccc
Confidence 456665542236788887754322 1111 13456666666 8999997544 4444444333332211
Q ss_pred ---------------h--HHHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013779 72 ---------------G--LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 131 (436)
Q Consensus 72 ---------------~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~ 131 (436)
+ ...+...-++.=+..+-.-.+.-.+.-....+++++.+..-...+.+.|..++..+--.
T Consensus 100 ~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFla 176 (544)
T PF13000_consen 100 GVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLA 176 (544)
T ss_pred ccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHh
Confidence 1 11223333333344455556666677777788999999988888888888887766443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00069 Score=63.55 Aligned_cols=117 Identities=14% Similarity=0.046 Sum_probs=80.8
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc---------h----------------
Q 013779 18 SAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA---------P---------------- 71 (436)
Q Consensus 18 s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~---------------- 71 (436)
.++.+..+-....+ ...+......+++||++|++++-+....+.....+.++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 55666777665555 455668889999999999998776665555544444431 1
Q ss_pred ------hHHHHHHHHHHHhhhhhhhhh-hhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 013779 72 ------GLGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 134 (436)
Q Consensus 72 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~ 134 (436)
+.|.+.+..+..-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+..++.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333333333333333 356788899999999999999999999999999998888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.5e-06 Score=56.91 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=48.2
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 60 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 60 (436)
.|.+|...++ .|+|+.|+|.+.++..+...++++++|.++||+++++.++......
T Consensus 20 ~Pfl~~~~~~--~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 20 YPFLPLYLKQ--LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HhhhhHhhhh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3556666666 8999999999999999999999999999999999999877765543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3e-06 Score=75.95 Aligned_cols=119 Identities=13% Similarity=-0.064 Sum_probs=85.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhhccc
Q 013779 271 AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG-FPLVAVSALLLYVGCYQISF 349 (436)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 349 (436)
+....+.+.....++.++|+++.|++.||+|||+++...++++.++.+........... ...+.+.+.=.+.|....+-
T Consensus 82 ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGD 161 (538)
T KOG0252|consen 82 PSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGD 161 (538)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCC
Confidence 33677888888999999999999999999999999998888888887744432211111 11233333334444445566
Q ss_pred ccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhH
Q 013779 350 GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 389 (436)
Q Consensus 350 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 389 (436)
.|+..+..+|....+.||.-.+.....+..|...|..+.-
T Consensus 162 YPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~ 201 (538)
T KOG0252|consen 162 YPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVAL 201 (538)
T ss_pred CcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHH
Confidence 6888899999999999999888877777776655555443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00012 Score=71.52 Aligned_cols=151 Identities=19% Similarity=0.113 Sum_probs=99.2
Q ss_pred HHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEeehhhHHHHHHHHHHHHHHHHHcC-C-c-hHHHHHHH
Q 013779 264 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGG-F-P-LVAVSALL 339 (436)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~ 339 (436)
.+..+.+. ..+..+...+....-+..+++++++|+ +|+++.+..+.++..++..++......... . . ...+..+.
T Consensus 15 ~~~lg~~~-~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa 93 (654)
T TIGR00926 15 LNFLGFSE-STSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA 93 (654)
T ss_pred HHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH
Confidence 44466665 555666666666677778888999996 799999888888888877766542110000 0 1 11222233
Q ss_pred HHHHHhhcccccccchhccccCCcc---ccchhhHHHHHHHHHHHHHHHHhhHHHHHHh-------CcchhHHHHHHHHH
Q 013779 340 LYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTNFGSNAIVTFAFSPLKELL-------GAENIFLLFAAIAF 409 (436)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~ 409 (436)
+ ..+...+.-|...+...|.++++ .+...+.+.....++|+.+++.+.+++.+.. +|...|.+.+++++
T Consensus 94 L-ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ 172 (654)
T TIGR00926 94 L-IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI 172 (654)
T ss_pred H-HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence 3 33333344455557778877643 3667788888889999999999999887554 47778888877777
Q ss_pred HHHhhee
Q 013779 410 LAVLFIV 416 (436)
Q Consensus 410 ~~~~~~~ 416 (436)
++.++..
T Consensus 173 ia~lvf~ 179 (654)
T TIGR00926 173 LALIVFM 179 (654)
T ss_pred HHHHHHH
Confidence 7766543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.1e-05 Score=50.02 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=52.2
Q ss_pred HHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhH
Q 013779 249 QITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 311 (436)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 311 (436)
.+.....+.-|.|.++++.|.+. .+.+.+..+..+..+++.++.|.++||.++++.......
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~Gl~~-~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLGLSP-SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 33344457778899999999998 899999999999999999999999999999987665443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0081 Score=55.17 Aligned_cols=119 Identities=14% Similarity=0.054 Sum_probs=86.4
Q ss_pred cchhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc---------hh--------------
Q 013779 17 LSAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA---------PG-------------- 72 (436)
Q Consensus 17 ~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~-------------- 72 (436)
.+++.+..+-+...+ ...+..++.+++.++..|++++-..+..+....+++++. ++
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 345677888888888 778899999999999999999887777776666666542 11
Q ss_pred ---------HHHHHHHHHHHhhhhhhhhh-hhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 013779 73 ---------LGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA 135 (436)
Q Consensus 73 ---------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~ 135 (436)
.|...+...+.-+-...... .-.....|.++.+|-.|..++++.+.+++..++..+..++.+.
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 13333333333333333333 3445678899989999999999999999999999998887653
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0002 Score=59.79 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=37.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcccc----ccccchHHHhhhhHHHHHHHHHHhcC
Q 013779 105 QIRGTLISLKELFIVLGILLGYFVGSFQIN----AVGGWRYMYGLSAPLALLMGIGMWSL 160 (436)
Q Consensus 105 ~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~----~~~~w~~~f~~~~~~~~~~~~~~~~~ 160 (436)
|+|+..+.....+.++|.++....--.-.+ ....|++.+.+.+++.++-+++...+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677788888888889998877654322101 11279999999888877766655443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0002 Score=64.51 Aligned_cols=121 Identities=15% Similarity=0.046 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHH-cCCch--HHHHHHHHHHHHhhccc
Q 013779 273 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL-GGFPL--VAVSALLLYVGCYQISF 349 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~ 349 (436)
..+-+...++.+..+...+.+.|+.||+|-|.....+..+.+++..+=....... ++..+ .......+. +......
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~ia-a~Aq~Fi 157 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIA-AAAQPFI 157 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHH-HHhhhHh
Confidence 5677888899999999999999999999999999888888877766544332110 01111 111111111 1111111
Q ss_pred ccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 013779 350 GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 394 (436)
Q Consensus 350 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 394 (436)
..+..-...--+|+++|+++..+..+.+.+|.+++-.+-..+..+
T Consensus 158 m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 158 LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 222222334458999999999999999999988887766655543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.025 Score=51.13 Aligned_cols=89 Identities=17% Similarity=0.031 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHh---hcccccc-ccchHHHhhhh
Q 013779 72 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG---SFQINAV-GGWRYMYGLSA 147 (436)
Q Consensus 72 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~---~~l~~~~-~~w~~~f~~~~ 147 (436)
.++..++.-.+.+.+.|..........++ +|++.-+..++ +.++++.+..++. ....+.. .+=..-|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~----G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMS----GQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHh----cchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 46677778888899888888888877766 56554433332 3344433333322 1212221 12222344444
Q ss_pred HHHHHHHHHHhcCCCChH
Q 013779 148 PLALLMGIGMWSLPPSPR 165 (436)
Q Consensus 148 ~~~~~~~~~~~~~~es~~ 165 (436)
++.+++.+....+|..|-
T Consensus 191 ~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhhcchH
Confidence 444445555555666653
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.35 E-value=3.4e-05 Score=73.61 Aligned_cols=173 Identities=14% Similarity=0.006 Sum_probs=1.3
Q ss_pred HHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHH
Q 013779 245 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY 324 (436)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (436)
..+.+.........-++.+-++.++++ .+.|++.+..-++.++..++..++.+|.+|-|.+..+.++++++.+++.+--
T Consensus 11 ~~~~q~~~~g~~~~~lttiErRF~l~S-~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPh 89 (539)
T PF03137_consen 11 LGLFQMMVSGYVNSSLTTIERRFGLSS-SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPH 89 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccH
Confidence 333333333334445555566678877 8999999999999999999999999998888888889988888888775421
Q ss_pred HHHc-----------------------------------------CC---chHHHHHHHHHHHHhhcccccccchhcccc
Q 013779 325 KILG-----------------------------------------GF---PLVAVSALLLYVGCYQISFGPISWLMVSEI 360 (436)
Q Consensus 325 ~~~~-----------------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (436)
...+ .. ....++...++.|.......++..+|+.|.
T Consensus 90 f~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDn 169 (539)
T PF03137_consen 90 FLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDN 169 (539)
T ss_dssp --------------------------------------------------------------SSS---------------
T ss_pred hhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccc
Confidence 1000 00 112223333344444444556778999999
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHhhHHHHH---------------------HhC-cchhHHHHHHHHHHHHhheeEe
Q 013779 361 FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---------------------LLG-AENIFLLFAAIAFLAVLFIVRT 418 (436)
Q Consensus 361 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---------------------~~g-~~~~~~~~~~~~~~~~~~~~~~ 418 (436)
++++..+...|+......+|.++|=.+.+...+ +.| |+..|++.+.+.++.++....+
T Consensus 170 v~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F 249 (539)
T PF03137_consen 170 VSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF 249 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999888888777666664432 123 5556666777766666654443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0044 Score=48.34 Aligned_cols=111 Identities=13% Similarity=-0.053 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhccccccc
Q 013779 274 DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 353 (436)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (436)
....-..+......+..++.+.+.+++|.|+.+.++.+...+-...... .+.+..+....+.+.+.+..+. ..
T Consensus 38 ~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~~~~l~~~s~l~G~~~a~lW~-aq 110 (156)
T PF05978_consen 38 LGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PNSYTLYPASALLGFGAALLWT-AQ 110 (156)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhhHHhhH-hh
Confidence 3344455556667778888999999999999998888777755444332 2234444444444444444444 33
Q ss_pred chhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHH
Q 013779 354 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 391 (436)
Q Consensus 354 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 391 (436)
-.++.+...++.+++..++...+.+.+..+|..+.-.+
T Consensus 111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888999999998888888877777655433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0041 Score=58.23 Aligned_cols=150 Identities=21% Similarity=0.256 Sum_probs=112.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc----------chhHHHHHHHHHHHhh
Q 013779 16 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY----------APGLGVLLVGRLLYGL 85 (436)
Q Consensus 16 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~ 85 (436)
|.|+...|.+..+..++..++..+.....-+..-|+++..+.++..+..+.-.. .++.+..+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 389999999999999999999999999888889999998888887776654221 1222333444566666
Q ss_pred hhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccc-------cchHHHhhhhHHHHHHHHHHh
Q 013779 86 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GWRYMYGLSAPLALLMGIGMW 158 (436)
Q Consensus 86 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-------~w~~~f~~~~~~~~~~~~~~~ 158 (436)
.....+.....+++|..|+...|...++..+..++|..++..++..+.+..+ +-.+..++..+..++.+.+..
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 6677777788889999999999999999999999999999999888765431 223445555555555555556
Q ss_pred cCCCChH
Q 013779 159 SLPPSPR 165 (436)
Q Consensus 159 ~~~es~~ 165 (436)
++|+..+
T Consensus 411 lLp~~~~ 417 (433)
T PF03092_consen 411 LLPPQKR 417 (433)
T ss_pred HcCCCch
Confidence 7777543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0045 Score=60.15 Aligned_cols=180 Identities=13% Similarity=-0.009 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHH
Q 013779 238 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 317 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 317 (436)
+.+...+..+.+......+..-+..+=+..++++ .+.|++...+-++..+...+..+...|..|-+++-++..+++++.
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~S-s~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISS-SQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC-CcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 3444444455444433334444444445567776 678888888889999999999999999999999999999999988
Q ss_pred HHHHHHHHHH----------------c---------------------------CC---chHHHHHHHHHHHHhhccccc
Q 013779 318 LLLSAYYKIL----------------G---------------------------GF---PLVAVSALLLYVGCYQISFGP 351 (436)
Q Consensus 318 ~~~~~~~~~~----------------~---------------------------~~---~~~~~~~~~~~~~~~~~~~~~ 351 (436)
++..+--... . .. .+..++...++.|....-..+
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 8876431100 0 00 223334444444555555566
Q ss_pred ccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHH------------------hC-cchhHHHHHHHHHHHH
Q 013779 352 ISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL------------------LG-AENIFLLFAAIAFLAV 412 (436)
Q Consensus 352 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~------------------~g-~~~~~~~~~~~~~~~~ 412 (436)
+..+|+.|...+++.....|+..++..+|.++|=.+.+..... .| |+..|++.+.+.++.+
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 7779999999999999999999999999988887777766532 23 5556777777777777
Q ss_pred hheeEe
Q 013779 413 LFIVRT 418 (436)
Q Consensus 413 ~~~~~~ 418 (436)
+..+++
T Consensus 337 ~p~f~f 342 (735)
T KOG3626|consen 337 VPLFFF 342 (735)
T ss_pred HHHHhC
Confidence 655443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00051 Score=58.50 Aligned_cols=140 Identities=16% Similarity=0.085 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhhHhh
Q 013779 20 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 99 (436)
Q Consensus 20 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 99 (436)
-..|.+.-+-.+...+..+.+....||+---+-..+..++.+.+.++.+++++.++-+++-.+..++.|.....-.++-+
T Consensus 62 ~stg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss 141 (409)
T KOG3880|consen 62 VSTGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS 141 (409)
T ss_pred cccchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc
Confidence 33566667777888888888889999875544455666778889999999999999999999999998887776665544
Q ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccc-ccchHHHhhhhHHHHHHHHHHhcCCCCh
Q 013779 100 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSLPPSP 164 (436)
Q Consensus 100 ~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~es~ 164 (436)
. +++ ...+.++.+.+..+++|..--..+.+.. .+-|...++...+.++.+...+++-++|
T Consensus 142 ~-Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 142 R-YPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred c-CCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 4 332 2345555566666666665444444311 1567777776666665555555443333
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.011 Score=55.26 Aligned_cols=121 Identities=10% Similarity=0.009 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCC---------------------
Q 013779 273 ADATRVSVVIGVFKLVM-TWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF--------------------- 330 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 330 (436)
+...++-....+...+. .++.+++++|++|+++.............++........+.
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 34444444443433333 78889999999999988776666655555554432211110
Q ss_pred ----chHHHHHHHHHHHHhhccccc-ccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH
Q 013779 331 ----PLVAVSALLLYVGCYQISFGP-ISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 393 (436)
Q Consensus 331 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 393 (436)
..+....+.+..-.++....+ +.|++.+|.+..++..+-.++....+++|..+++.+..++.+
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111222222223333333 778999999999999999999999999999999998888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.038 Score=52.89 Aligned_cols=135 Identities=22% Similarity=0.159 Sum_probs=82.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHH-HHHHHh----ccchhH-HHHHHHHHHHhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII-AAVLYA-LGALTT----AYAPGL-GVLLVGRLLYGLGI 87 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~-~~~~~~----~~~~~~-~~l~~~r~l~G~~~ 87 (436)
+|-+..+.+.+.++++.|.++|+..++++.++--|+....- ...+.+ ++..+. ++...+ ..++..-++.++..
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999999999999999988754333332211 111111 111111 111111 22344456678888
Q ss_pred hhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccc-ccccchHHHhhhhHHHH
Q 013779 88 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN-AVGGWRYMYGLSAPLAL 151 (436)
Q Consensus 88 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~-~~~~w~~~f~~~~~~~~ 151 (436)
|...|....+..+.. +++-++..|-......+|.++|.++.+++.- .. |-....++.+.+.+
T Consensus 125 G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l-G~~~t~~~~a~l~~ 187 (521)
T PRK03612 125 GMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRL-GLIRTAALTGSLNL 187 (521)
T ss_pred HHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHH
Confidence 888888777666533 2345667788888999999999998877654 34 43333333333333
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00029 Score=62.63 Aligned_cols=110 Identities=9% Similarity=-0.138 Sum_probs=2.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHc--------CCchHHHHHHHHHHHHhhcc
Q 013779 277 RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG--------GFPLVAVSALLLYVGCYQIS 348 (436)
Q Consensus 277 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 348 (436)
.....+.++..+|+.+..+..-+..+++.+.+..+.=.+...++......+. .+.++. .+..+..+...+-
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~-~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWF-IILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHH-HHHHHHHHHccch
Confidence 3466788999999998876432211333333322222211111111100000 112222 2233333344444
Q ss_pred cccccchhccccCCccccchhhHHHHHHHHHHHHHHHHh
Q 013779 349 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 387 (436)
Q Consensus 349 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 387 (436)
.......+..+..++++|..+..+....-.+|-.+|..+
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp --HHHH---------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777788888888877777776666776666554
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.033 Score=49.31 Aligned_cols=149 Identities=23% Similarity=0.163 Sum_probs=88.5
Q ss_pred HHhchHHHHHhcCCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHH
Q 013779 256 VLYYAGPILQSAGFSAA-ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 334 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (436)
.....+.+..+.+.... ...+.......+...++.++.|.+.||.|||+.+..+......+....... .......
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 96 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA----PNVGLAL 96 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----ccchHHH
Confidence 33445555555554432 256778888888888888999999999999966655554423332222211 1111222
Q ss_pred HHHHHHHHHHhhcccccccchhccccCCc-cccchhhHHHHH-HHHHHHHHHHHhhHHHHHH--hCcchhHHHHHHHH
Q 013779 335 VSALLLYVGCYQISFGPISWLMVSEIFPL-RTRGRGISLAVL-TNFGSNAIVTFAFSPLKEL--LGAENIFLLFAAIA 408 (436)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~~~~~~~--~g~~~~~~~~~~~~ 408 (436)
+.......+.......+....+..|..|+ +.|+...+.... ....+..++|.+.+.+... .+|+..+.......
T Consensus 97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 97 LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 22222223333334556667888899887 578888888777 5777778888666665554 35555444444443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.033 Score=50.73 Aligned_cols=116 Identities=19% Similarity=0.098 Sum_probs=82.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH---HHHHHhccchhHHHHHHHHHHHhhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA---LGALTTAYAPGLGVLLVGRLLYGLGIGLAM 91 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 91 (436)
+.-..++..+....|.+|..++.--...+ |+-+-+++.+-.++.. +.....-+.++.|..++.-+..|+..|..+
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~Y 353 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASY 353 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHH
Confidence 33345677777888887766664432221 3322222222222222 222233346789999999999999999999
Q ss_pred hhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 013779 92 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 132 (436)
Q Consensus 92 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l 132 (436)
+-....+.|-.++++|..+++..+.+.++|..++.+++-++
T Consensus 354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988664
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.19 Score=46.74 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHhccc------------------hhHHHHHHHHHHHhhhh
Q 013779 29 SLYGALLGSILVYSIAD---FLGRKRELIIAAVLYALGALTTAYA------------------PGLGVLLVGRLLYGLGI 87 (436)
Q Consensus 29 ~~~~~~i~~~~~g~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~ 87 (436)
..+|..++..+.+.+.+ |+||++.+.++.++..++.++.-.. +++...++.-++.|++.
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D 367 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD 367 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence 34455555666666665 6889999999888888777765442 24667888889999999
Q ss_pred hhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013779 88 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 131 (436)
Q Consensus 88 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~ 131 (436)
+......+.++.+.. +++|..+.++...-..++..++......
T Consensus 368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999 6788888888888777777766555444
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.21 Score=46.36 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=90.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhc------cch----hHHHHHHHHHHHh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA------YAP----GLGVLLVGRLLYG 84 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------~~~----~~~~l~~~r~l~G 84 (436)
-|+|+..+|..-+...+....+.+...++.+|+|..|.-.++......+..++. -.+ +...++.+-.+.=
T Consensus 288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR 367 (432)
T PF06963_consen 288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSR 367 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999987777665443333322 222 3344444444444
Q ss_pred hhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 013779 85 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 132 (436)
Q Consensus 85 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l 132 (436)
+|.=....+..-++.|..|++|||...|...+..++--++...++-.+
T Consensus 368 ~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 368 IGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 554445667777899999999999999999999999888888776544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.19 Score=45.97 Aligned_cols=148 Identities=15% Similarity=0.112 Sum_probs=86.5
Q ss_pred chHHHHHh--cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHH
Q 013779 259 YAGPILQS--AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVS 336 (436)
Q Consensus 259 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (436)
|+..++.+ .+++..+...-+.-...-..+..-+....+.|.++.|++++...+...+...++.+. .....+-
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~------~sv~~mq 98 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG------TSVLAMQ 98 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH------CcHHHHH
Confidence 44444443 566653333333333344556666777788999999999888877777766665542 2333333
Q ss_pred HHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC--cchhHHHHHHHHHHHHh
Q 013779 337 ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--AENIFLLFAAIAFLAVL 413 (436)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~ 413 (436)
..-++.|..... -...++++-...|+++--++.+........|..++..++-.+...-+ +.....+..+...++.+
T Consensus 99 ~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~ 176 (412)
T PF01770_consen 99 LMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALL 176 (412)
T ss_pred HHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 333333333222 22344666667788888888999888888888888777666655333 33333333333333333
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.049 Score=37.26 Aligned_cols=66 Identities=18% Similarity=0.047 Sum_probs=55.6
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHH
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSA 322 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 322 (436)
+.-.+|...++.+++. .+.+++.+...++.++|.+...++.++.++++.+..+.....+....+..
T Consensus 11 yTplLP~M~~~~~ls~-~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSL-SQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHhHhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888887 89999999999999999999999988877788888888887777777665
|
Note that many members are hypothetical proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.022 Score=52.45 Aligned_cols=112 Identities=11% Similarity=-0.090 Sum_probs=71.9
Q ss_pred EeehhhHHHHHHHHHHHHHHHHHcC----CchHHHHHHHHHHHHhhcccccccchhccccCCcc---ccchhhHHHHHHH
Q 013779 305 LLIGGVCGIALSLLLLSAYYKILGG----FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTN 377 (436)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~ 377 (436)
++.++.++..++.+++......... ........+. ......++.-|...++..|.++++ +|.+.+.......
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~-lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLA-LIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHH-HHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHH-HHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 3445666666666665443221000 0122233333 333444455566668888888765 3566777788889
Q ss_pred HHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhheeE
Q 013779 378 FGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR 417 (436)
Q Consensus 378 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 417 (436)
++|+.+++.+.+++.++.||...|.+.++..+++.+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988888887765443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.33 Score=46.68 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=34.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhHHHHH-HhCcchhHHHHHHHHHHHHh
Q 013779 366 RGRGISLAVLTNFGSNAIVTFAFSPLKE-LLGAENIFLLFAAIAFLAVL 413 (436)
Q Consensus 366 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 413 (436)
.+...|-......+|+++|+.+.+.+.- ..|......+.+.+.+++++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4566788888899999999999888654 67766555555555555444
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.026 Score=51.40 Aligned_cols=133 Identities=19% Similarity=0.087 Sum_probs=82.4
Q ss_pred hhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh----cCCccEeehh-hHHHHHHHHHHHHHHHHH-
Q 013779 254 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD----LGRRPLLIGG-VCGIALSLLLLSAYYKIL- 327 (436)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 327 (436)
..-..|.+.++++.|... ...+.......+.+++..++.|..+|| +||||..+.. ....+++..++.......
T Consensus 49 A~elsy~tPyl~~lGvph-k~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~ 127 (498)
T KOG0637|consen 49 ALELSYLTPYLQSLGVPH-KWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGL 127 (498)
T ss_pred HHHhccccHHHHHcCCCc-ccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhH
Confidence 345678889999999887 566677777778888889999999997 5788776554 444455555544432211
Q ss_pred ---cC-Cc---hHHHHH----HHHHHHHhhcccccccchhccccCCccccch-hhHHHHHHHHHHHHHHHHhh
Q 013779 328 ---GG-FP---LVAVSA----LLLYVGCYQISFGPISWLMVSEIFPLRTRGR-GISLAVLTNFGSNAIVTFAF 388 (436)
Q Consensus 328 ---~~-~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~~g~~~~~~~~ 388 (436)
++ .. ...+.. ..+.-........|.- ++..|+...+.+.+ +++.......+|+.+|=.+.
T Consensus 128 ~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g 199 (498)
T KOG0637|consen 128 LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG 199 (498)
T ss_pred HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence 11 11 111211 2222222333444444 78888876666666 88888888888876654443
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.86 Score=40.79 Aligned_cols=122 Identities=18% Similarity=0.072 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhc------cc------hhHHHHHHHHHHHhhhhhhhhhhh--h
Q 013779 30 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA------YA------PGLGVLLVGRLLYGLGIGLAMHGA--P 95 (436)
Q Consensus 30 ~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------~~------~~~~~l~~~r~l~G~~~~~~~~~~--~ 95 (436)
.....+..++.|...|+..|+|++.....+.-++...++ +. .++..+..+-++.-...+...... .
T Consensus 73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~ 152 (503)
T KOG2601|consen 73 SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAG 152 (503)
T ss_pred HhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345567778889999999999998877665443333322 21 245555555554433322221111 1
Q ss_pred --hHhhhcC----cccchhhHH---HHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHH
Q 013779 96 --LYIAETC----PSQIRGTLI---SLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL 152 (436)
Q Consensus 96 --~~i~~~~----~~~~r~~~~---~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~ 152 (436)
.+-.||. ..+.+.... +..-..-..-..++|++.|.+.... +-|..-.+.++-.++
T Consensus 153 ~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfv-sl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 153 TILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFV-SLRASAGTFAAWALV 217 (503)
T ss_pred eEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceee-chhhhhhhhHHHHHH
Confidence 1223443 233444433 5555566677889999999888776 777655554444444
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.7 Score=42.23 Aligned_cols=155 Identities=15% Similarity=0.089 Sum_probs=96.3
Q ss_pred chHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEeehhhHHHHHHHHHHHHHHHHHcC--------
Q 013779 259 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGG-------- 329 (436)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 329 (436)
...+...+.+... ..+.-....+........+++++++|. +||-+++.++.++..++..++.........
T Consensus 60 lv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~ 138 (571)
T KOG1237|consen 60 LVTYLTLELHASG-GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFK 138 (571)
T ss_pred HHHHHHHHhccch-HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Confidence 3333445555555 555556666666677778899999996 577788877777777776665544332210
Q ss_pred ------C--c---hHHHHHHHHHHHHhhcccccccchhccccCCc----cccc--hhhHHHHHHHHHHHHHHHHhhHHHH
Q 013779 330 ------F--P---LVAVSALLLYVGCYQISFGPISWLMVSEIFPL----RTRG--RGISLAVLTNFGSNAIVTFAFSPLK 392 (436)
Q Consensus 330 ------~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~--~~~g~~~~~~~~g~~~~~~~~~~~~ 392 (436)
. . ...+...+........+.-|...++-+|.+++ +.+. .-+.......+.|..++..+.-+..
T Consensus 139 ~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq 218 (571)
T KOG1237|consen 139 PGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ 218 (571)
T ss_pred CCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0 01122222222223344455555777777772 2223 5556667778888888888888888
Q ss_pred HHhCcchhHHHHHHHHHHHHhh
Q 013779 393 ELLGAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 393 ~~~g~~~~~~~~~~~~~~~~~~ 414 (436)
+..||...|-+..+...++.++
T Consensus 219 ~~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 219 DNVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred hcccceeeccHHHHHHHHHHHH
Confidence 8889988888877777666554
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.27 Score=41.76 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=36.9
Q ss_pred HHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHH
Q 013779 263 ILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 316 (436)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 316 (436)
+.+++++.. .+.+.+........++.+.+.|-+.||.|||+.-+.-.+-..++
T Consensus 63 LYstYgFgk-G~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLs 115 (454)
T KOG4332|consen 63 LYSTYGFGK-GDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILS 115 (454)
T ss_pred eehhcCccC-CccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHH
Confidence 356667766 56776666666667777788889999999998766544444333
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=90.63 E-value=3.7 Score=39.12 Aligned_cols=109 Identities=12% Similarity=-0.007 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHH----cCCc--------------h-------HHHHHHH
Q 013779 285 FKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL----GGFP--------------L-------VAVSALL 339 (436)
Q Consensus 285 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------------~-------~~~~~~~ 339 (436)
+.++...+..+++++++++++.............+++...... +.+. + +......
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 3455566778999999999877655555554444444332110 0000 0 0011111
Q ss_pred HHHHHh-hcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH
Q 013779 340 LYVGCY-QISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 393 (436)
Q Consensus 340 ~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 393 (436)
+..=.. ....+-+.|.+.+|..+.++..+-.++.....++|..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122 222233578999999999999999999999999999999998888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.96 E-value=1.5 Score=38.28 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 013779 57 AVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 132 (436)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l 132 (436)
-+++.+......+.++++..++.-+.-|+-.|..++-..--+.+-.++++|..+++....+.++|..++..++-.+
T Consensus 326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 3444455566677899999999999999999988888877788878899999999999999999999999887654
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.71 E-value=15 Score=34.68 Aligned_cols=121 Identities=12% Similarity=-0.036 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHH---------------cCCc-----
Q 013779 273 ADATRVSVVIGV-FKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL---------------GGFP----- 331 (436)
Q Consensus 273 ~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~----- 331 (436)
+....+-...-+ ++++..++..++.+++.++++...........+.+++...... ...+
T Consensus 61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~ 140 (509)
T COG3202 61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW 140 (509)
T ss_pred hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence 344444444434 5677778888899999998887666555555555554433210 0011
Q ss_pred -------hHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHH
Q 013779 332 -------LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 393 (436)
Q Consensus 332 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 393 (436)
|.........-.-.....+-+.|....|....++..+-.++.+...+++..+++.+..++.+
T Consensus 141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111111111122223333667889999999999999999999999999988888887765
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=86.28 E-value=7.4 Score=36.65 Aligned_cols=110 Identities=18% Similarity=0.164 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHH--HHHHHHHHHHHHhcc---------chhHHHHHHHHHHHhhhh
Q 013779 21 QLGLVVSGSLYGALLGSILVYSIADFLGRK--RELI--IAAVLYALGALTTAY---------APGLGVLLVGRLLYGLGI 87 (436)
Q Consensus 21 ~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~--~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~ 87 (436)
..-.....++++-.+|..+..+.. .-++| ++.. +.=+++.-..++|.. -++-+..++..++.|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 445666777777777777554321 11222 2222 122233333344432 246667778899999999
Q ss_pred hhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013779 88 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 131 (436)
Q Consensus 88 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~ 131 (436)
|-.....+.+..+..+++||..+..+...+..+|..+|..++-.
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.23 E-value=14 Score=33.97 Aligned_cols=54 Identities=2% Similarity=-0.231 Sum_probs=23.3
Q ss_pred HHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013779 244 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 299 (436)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 299 (436)
+.........+.+.+-.+++.+..-..+. .........+.+.+..++.-.+.-+
T Consensus 25 llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~ 78 (406)
T KOG1479|consen 25 LLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAF 78 (406)
T ss_pred HHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455555555555444332 3334444444444444444443333
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=84.40 E-value=22 Score=29.48 Aligned_cols=35 Identities=23% Similarity=0.497 Sum_probs=18.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 013779 104 SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW 139 (436)
Q Consensus 104 ~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w 139 (436)
++++.+.-.......-++..+|..+++.+.+.. +.
T Consensus 157 ~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~-~~ 191 (209)
T PF06912_consen 157 GKDRALRRALRYLLIILSFFIGAILGALLYRRL-GF 191 (209)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 333333334445555566666666666655554 53
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.18 E-value=7.2 Score=27.75 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHH
Q 013779 21 QLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALG 63 (436)
Q Consensus 21 ~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~ 63 (436)
+.+.-.+.-+++..+.....||+.||| |-+++.++..++.+.+
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~ 86 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFG 86 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 445566777788888888889999997 6677666555544443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.50 E-value=39 Score=30.23 Aligned_cols=72 Identities=21% Similarity=0.354 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcC
Q 013779 30 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETC 102 (436)
Q Consensus 30 ~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 102 (436)
.+..+..+++.+.+..++|.|.++.++...+... +..-+-+.+..++..-.+.|++.+..+..--+++++.-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 4455667777779999999999999988777653 33334577889999999999999999988777776554
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.71 E-value=25 Score=32.22 Aligned_cols=136 Identities=17% Similarity=0.044 Sum_probs=59.7
Q ss_pred HHHHHhChhhHHhchHHHHHhcCCCc--chhhHHHHHHHHHHHHHHHHHHHHHHh-----hcCCccEeehh-hHHHHHHH
Q 013779 246 LFQQITGQPSVLYYAGPILQSAGFSA--AADATRVSVVIGVFKLVMTWIAVAKVD-----DLGRRPLLIGG-VCGIALSL 317 (436)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~~~~-~~~~~~~~ 317 (436)
...+..-+... .-.|.+++..+.+- .....+...++. -.++...+.| |+||||..+.- ..+....+
T Consensus 40 YllQGiP~GL~-~~iP~lL~ak~vSyt~~a~fS~ay~P~s-----LKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~m 113 (510)
T KOG3574|consen 40 YLLQGIPLGLI-GAIPLLLQAKGVSYTSQAIFSFAYWPFS-----LKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFM 113 (510)
T ss_pred HHHcCCchhHh-hhhHHHhcCCCcchhhhhhhhhhhhHHH-----HHHHHHhhhHHHHHHhhccccceeeehHHHHHHHH
Confidence 33443333333 37788887655443 122222222332 2345556666 99999876653 33333333
Q ss_pred HHHHHHHHH--H-c-CCchHHHH--HHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhh
Q 013779 318 LLLSAYYKI--L-G-GFPLVAVS--ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 388 (436)
Q Consensus 318 ~~~~~~~~~--~-~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 388 (436)
..+...... . + ..+..... .++++.... ...-.....+.-....++.-|-+..........|-+++..++
T Consensus 114 llLs~~v~~~~g~ng~~p~v~~lt~~f~LLnfla-AtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 114 LLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLA-ATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHhhCCCcccccCCCCcchHHHHHHHHHHHHHH-hhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 333321100 0 0 11111111 111121111 111112223334445667777776665555666666655544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 436 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-27 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 436 | |||
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 3e-08 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 4e-06 |
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 6/156 (3%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 74
N+ + V+ L + + I+D +GR+ +++ ++ L L L
Sbjct: 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89
Query: 75 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 134
VL+ + G+G G+ A + SL + I++ LL +G ++
Sbjct: 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG-LLD 148
Query: 135 AVGGWRYMYGLSAPLALLMGIGMW-----SLPPSPR 165
+ WR Y L + M + P
Sbjct: 149 TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP 184
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 58/418 (13%), Positives = 127/418 (30%), Gaps = 49/418 (11%)
Query: 14 WFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG- 72
S LG +SG ++ S++D + L +L A L + P
Sbjct: 56 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 115
Query: 73 ---LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG 129
+ V+ V L G G+ + + RG ++S+ +G + +
Sbjct: 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175
Query: 130 SFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISAL 189
+ W + A A+L+ + +++ + + +
Sbjct: 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP----------------QSCGLPPI 219
Query: 190 GKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG---GGLVL 246
+ + P D + + E T + V L I L+
Sbjct: 220 EEYKNDYPDDYNEKAEQELT-----------AKQIFMQYVLPNKLLWYIAIANVFVYLLR 268
Query: 247 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 306
+ + P+ L + F+ ++ + + T + D + R
Sbjct: 269 YGILDWSPTYLK------EVKHFA-LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 321
Query: 307 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 366
GV + L + Y+ G P V + +++ +G + L E+ P +
Sbjct: 322 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAA 380
Query: 367 GRGISLAVLTNFGSNA----IVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVP 420
G + A T + + G + F++ + LAV+ ++ +
Sbjct: 381 G---TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 435
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 436 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.53 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.49 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.47 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.41 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.39 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.36 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.22 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=344.27 Aligned_cols=398 Identities=33% Similarity=0.595 Sum_probs=310.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc------------------chhHHHHH
Q 013779 16 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY------------------APGLGVLL 77 (436)
Q Consensus 16 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------------------~~~~~~l~ 77 (436)
+.++++.|++.+.+.+|..++++++|+++||+|||+++.++.+++.++++++++ ++|++.++
T Consensus 51 ~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 345678899999999999999999999999999999999999999999999884 78999999
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccc-------cccchHHHhhhhHHH
Q 013779 78 VGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA-------VGGWRYMYGLSAPLA 150 (436)
Q Consensus 78 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~-------~~~w~~~f~~~~~~~ 150 (436)
++|+++|++.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++...... ..+||+.+.+..++.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999887765432 126899999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhc
Q 013779 151 LLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 230 (436)
Q Consensus 151 ~~~~~~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (436)
++..+..+++||||+|+..| ++.+++.+.+++.+.++..++ +..+. ++..+++++.......+
T Consensus 211 ~~~~~~~~~~peSp~~L~~~---------~~~~~a~~~l~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~ 273 (491)
T 4gc0_A 211 LLFLMLLYTVPESPRWLMSR---------GKQEQAEGILRKIMGNTLATQ----AVQEI----KHSLDHGRKTGGRLLMF 273 (491)
T ss_dssp HHHHHHGGGSCCCHHHHHHT---------TCHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHTTHHHHS
T ss_pred hhhhhhhhcCCCChHHHHHc---------CchhHHHHhHHHhcCCchhHH----HHHHH----HHHHHhhhhhhhHHHHh
Confidence 98888889999999999974 445555555554433211110 00000 00000111111112222
Q ss_pred cCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhh
Q 013779 231 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 310 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 310 (436)
+. +...+......+.+..+...+.+|.+.+.+..+.+. ..........++..+++.++++++.||+|||+.+..+.
T Consensus 274 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~ 349 (491)
T 4gc0_A 274 GV---GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST-DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGA 349 (491)
T ss_dssp CC---THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHH
T ss_pred cc---cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccch
Confidence 22 334455556677777788888889999888887776 56667777888899999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHH
Q 013779 311 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 390 (436)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 390 (436)
..+.++.+.+..... ........+....++..++..+..++.+.+.+|.+|++.|+++.|+.+.++++++.+++.+.+.
T Consensus 350 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~ 428 (491)
T 4gc0_A 350 LGMAIGMFSLGTAFY-TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPM 428 (491)
T ss_dssp HHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777766654432 2233344455555566667777888888999999999999999999999999999999888766
Q ss_pred HHH------HhCcchhHHHHHHHHHHHHhheeEecccCCCCCHHHHHhhhh
Q 013779 391 LKE------LLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKIL 435 (436)
Q Consensus 391 ~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (436)
+.+ ..+....|++++++++++.++.+++.||||+|+.||+|+..|
T Consensus 429 l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 429 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 543 345667888999999999888888899999999999876543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=312.91 Aligned_cols=376 Identities=14% Similarity=0.085 Sum_probs=283.4
Q ss_pred cccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcc----chhHHHHH
Q 013779 2 IIAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY----APGLGVLL 77 (436)
Q Consensus 2 ~~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~ 77 (436)
+.+.+|.+.++ + .|..+.|++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++ +++++.++
T Consensus 47 ~~~~~~~~~~~--~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (451)
T 1pw4_A 47 FALAMPYLVEQ--G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 123 (451)
T ss_dssp HHHHHHHTTSS--T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHH
T ss_pred HHHHHHHHHHH--h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 35678889988 8 99999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccccc-chHHHhhhhHHHHHHHHH
Q 013779 78 VGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG-WRYMYGLSAPLALLMGIG 156 (436)
Q Consensus 78 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~-w~~~f~~~~~~~~~~~~~ 156 (436)
++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+.. + ||+.|++.++++++..++
T Consensus 124 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~w~~~f~~~~~~~~~~~~~ 202 (451)
T 1pw4_A 124 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALF 202 (451)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877766 7 999999999888776554
Q ss_pred -HhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCch
Q 013779 157 -MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 235 (436)
Q Consensus 157 -~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (436)
.+++||+|+.... .+ ++ +.++..+.+. +.+++++.+.++...++.++++.+
T Consensus 203 ~~~~~~~~~~~~~~----~~---~~----------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 254 (451)
T 1pw4_A 203 AFAMMRDTPQSCGL----PP---IE----------------EYKNDYPDDY-----NEKAEQELTAKQIFMQYVLPNKLL 254 (451)
T ss_dssp HHHHCCCSSTTTCC----CS---CT----------------TTCCC------------------CCTHHHHHHTSSCHHH
T ss_pred HHhhccCCHhhcCC----CC---hh----------------hhcccccccc-----hhhhhcccccccchHHHHHcCHHH
Confidence 4578887752100 00 00 0000000000 000000011111114567777777
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc--CCccEeehhhHH
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL--GRRPLLIGGVCG 312 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~ 312 (436)
+...+..++..+.. .....+.|.++++ .+.+. .+.+.......++.+++.++.+++.||+ +||+.+..+..+
T Consensus 255 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 255 WYIAIANVFVYLLR----YGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHBTTBSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 76665544444433 3467788888887 56665 7888999999999999999999999999 898877666555
Q ss_pred HH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHH-HHHHHHHhhHH
Q 013779 313 IA-LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG-SNAIVTFAFSP 390 (436)
Q Consensus 313 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~ 390 (436)
.. ++.+++.. ....+...........+.......+....+..|.+|++.|+++.|+.+...++ |..++|.+.|.
T Consensus 330 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 330 LVTIATIVYWM----NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHTTS----CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 33333321 11113333333333333433444455568899999999999999999999999 99999999999
Q ss_pred HHHHhCcchhHHHHHHHHHHHHhheeEe
Q 013779 391 LKELLGAENIFLLFAAIAFLAVLFIVRT 418 (436)
Q Consensus 391 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 418 (436)
+.+..|+...|++.+++.+++.++....
T Consensus 406 l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 406 TVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888777655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=292.61 Aligned_cols=349 Identities=17% Similarity=0.141 Sum_probs=273.8
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh---ccchhHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYAPGLGVLLVG 79 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~ 79 (436)
.+.+|.+.++ +|+|+.+.|++.+.+.++..++++++|+++||+|||+++.++.++.+++.+++ +++++++.++++
T Consensus 46 ~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (438)
T 3o7q_A 46 DILLPQFQQA--FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123 (438)
T ss_dssp HHHHHHHHHH--SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 4667888888 99999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred HHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccc-ccccc--------------------
Q 013779 80 RLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-NAVGG-------------------- 138 (436)
Q Consensus 80 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~-~~~~~-------------------- 138 (436)
|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +....
T Consensus 124 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (438)
T 3o7q_A 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHS 203 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999988 55423
Q ss_pred ----chHHHhhhhHHHHHHHHHHhc--CCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHh
Q 013779 139 ----WRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVS 212 (436)
Q Consensus 139 ----w~~~f~~~~~~~~~~~~~~~~--~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (436)
||+.|++.+.+.++..+..++ .||+++. .+
T Consensus 204 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----------------------------~~---------------- 239 (438)
T 3o7q_A 204 LVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----------------------------NH---------------- 239 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----------------------------CC----------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----------------------------cc----------------
Confidence 999998887777666554433 4544320 00
Q ss_pred hhhccccccccccchhhccCCchhHHHHHHHHHHHHHHhChhhHHhchHHH-HHhc-CCCcchhhHHHHHHHHHHHHHHH
Q 013779 213 LKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQSA-GFSAAADATRVSVVIGVFKLVMT 290 (436)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 290 (436)
+++++++.+.++++++|+|.++...+...+..... .....+.|.+ +++. +.+. .+.+.......++.+++.
T Consensus 240 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~ 312 (438)
T 3o7q_A 240 --SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPGMTA-GFAANYLTGTMVCFFIGR 312 (438)
T ss_dssp --CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSTTCCH-HHHHHHHHHHHHHHHHHH
T ss_pred --ccccccchhhhHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCCcch-hHHHHHHHHHHHHHHHHH
Confidence 00011122235677888888887776555544433 3466778888 7776 6665 788899999999999999
Q ss_pred HHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhh
Q 013779 291 WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 370 (436)
Q Consensus 291 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 370 (436)
++.+++.||++||+.+..+..+..++.+++.. ...........+. +.......|..+++..|.+|++ ++++.
T Consensus 313 ~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~ 384 (438)
T 3o7q_A 313 FTGTWLISRFAPHKVLAAYALIAMALCLISAF------AGGHVGLIALTLC-SAFMSIQYPTIFSLGIKNLGQD-TKYGS 384 (438)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHH-HHHHTTHHHHHHHHHHSSCGGG-HHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH------cCCcHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccc-ccchh
Confidence 99999999999999888777776666555443 1222223333333 3333444566778888888866 88888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhC-cchhHHHHHHHHHHHHh
Q 013779 371 SLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVL 413 (436)
Q Consensus 371 g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~ 413 (436)
++.. ...+|+.++|.+.|.+.|..| ++..|.+.+++.++..+
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8877 677999999999999999999 88888876666555444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=275.28 Aligned_cols=397 Identities=12% Similarity=0.047 Sum_probs=255.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhh
Q 013779 14 WFNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 92 (436)
Q Consensus 14 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 92 (436)
++|.|..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 389999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhcCcccc--hhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhcC-CCChHHHHH
Q 013779 93 GAPLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-PPSPRWLLL 169 (436)
Q Consensus 93 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~~-~es~~~l~~ 169 (436)
...+++.|++|+++ |+.++++.+.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..++. ++..+ .
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~ 203 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTLD---P 203 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTCC---S
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCccccc---c
Confidence 99999999999988 778889899999999999999999988877 99999999877766655444322 11100 0
Q ss_pred HhhcCcCccchHHHHHHHHHhh----------------hhcCCCCCcchhhhHHHHHHh--h--hhccccccccccchhh
Q 013779 170 RAVQGKGSLQEYKEQAISALGK----------------LRRRPPGDKLSERQIEDTLVS--L--KSSYTDEKSEGSFLEV 229 (436)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~ 229 (436)
+ .++.+.+.+.++.++..+. ..+..+.+ +.......... . ......+++.....+.
T Consensus 204 ~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (491)
T 4aps_A 204 H--YLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLP--AYINLLTIVAIAIPVFYFAWMISSVKVTSTEH 279 (491)
T ss_dssp C--CSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTT--HHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred c--ccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccc--cchhhhhHHHHHHHHHHHHHHhhcccccHHHH
Confidence 0 0011111112222221111 11111111 11100000000 0 0000000000001111
Q ss_pred ccCCchhHHHHHHHHHHHHHHhChhhHHhchHHHHHhc-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEee-
Q 013779 230 FQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI- 307 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~- 307 (436)
.+........+...+..... .....+.+.+.++. +.+. ...+.......+..+++.++.+++.||++||+...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~ 354 (491)
T 4aps_A 280 LRVVSYIPLFIAAVLFWAIE----EQGSVVLATFAAERVDSSW-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP 354 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHH----GGGGTHHHHHHHHSCCCSS-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHhccCc-cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch
Confidence 11112222232222222222 23455566666663 3332 56677778888888999999999999999998766
Q ss_pred ----hhhHHHHHHHHHHHHHHHHH---cCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHH
Q 013779 308 ----GGVCGIALSLLLLSAYYKIL---GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 380 (436)
Q Consensus 308 ----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 380 (436)
.+..+.+++..++....... .+..........+..+.......+..+.+..|.+|++.|+++.|+.+...++|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 355 TKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 55555555555544322110 11233333333344444444555666789999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHhheeEecccCCC
Q 013779 381 NAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG 424 (436)
Q Consensus 381 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (436)
..++|.+.+.+.+. ++...|...+++.+++.++.+...++.++
T Consensus 435 ~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 435 SALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877654 66777887777777776655555554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=276.87 Aligned_cols=340 Identities=14% Similarity=0.116 Sum_probs=258.4
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 82 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 82 (436)
.+.+|.+.++ +|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++
T Consensus 20 ~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 97 (375)
T 2gfp_A 20 IPAIADMARD--LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAM 97 (375)
T ss_dssp HHHHHHHHTT--SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4667888888 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHH-HHhcCC
Q 013779 83 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLP 161 (436)
Q Consensus 83 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~ 161 (436)
+|++.+...+...+++.|++|+++|++++++.+.+.++|..++|.+++++.+.. +||+.|++.++..++..+ ..+.+|
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (375)
T 2gfp_A 98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRACYLFLLVLCAGVTFSMARWMP 176 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHCCCCCSSC
T ss_pred HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999999999999999999999999999988877 999999998888877665 345677
Q ss_pred CChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhHHHHH
Q 013779 162 PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 241 (436)
Q Consensus 162 es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (436)
|+++. ++++++.+.++++++|+|+++...+.
T Consensus 177 ~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (375)
T 2gfp_A 177 ETRPV-------------------------------------------------DAPRTRLLTSYKTLFGNSGFNCYLLM 207 (375)
T ss_dssp CCSTT-------------------------------------------------TCCCCCTTTCSTHHHHHHHHHHHHHH
T ss_pred ccCCC-------------------------------------------------CcccccHHHHHHHHhcCcchHHHHHH
Confidence 76531 00011123345677777777766655
Q ss_pred HHHHHHHHHhChhhHHhchHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHH-HHHHHHH
Q 013779 242 GGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG-IALSLLL 319 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~ 319 (436)
..+...... ....+.|.++++ .+.+. .+.+.......++.+++.++.+++.||.+++ ...+... ...+...
T Consensus 208 ~~~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~ 280 (375)
T 2gfp_A 208 LIGGLAGIA----AFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLM 280 (375)
T ss_dssp HHHHHHHHH----HHHHHCSCSSHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSS
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 544444333 355566666655 55554 6788888999999999999999999998762 2222222 1222211
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcch
Q 013779 320 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAEN 399 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 399 (436)
+.... ...++.+.......+.. .......+....+..|..| ++|+++.|+.+...++|..++|.+.+.+.+..++..
T Consensus 281 ~~~~~-~~~~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 357 (375)
T 2gfp_A 281 WIPDW-FGVMNVWTLLVPAALFF-FGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL 357 (375)
T ss_dssp SHHHH-HHHHHHHHHHHHHHHHH-HHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHH
T ss_pred HHHhh-hccccHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 11111 00112222223333333 3333445566688999988 899999999999999999999999999988877766
Q ss_pred hHHHH
Q 013779 400 IFLLF 404 (436)
Q Consensus 400 ~~~~~ 404 (436)
.+...
T Consensus 358 ~~~~~ 362 (375)
T 2gfp_A 358 GLLMT 362 (375)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-32 Score=255.76 Aligned_cols=368 Identities=14% Similarity=0.088 Sum_probs=236.4
Q ss_pred cccCc-ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---HHhccchhH-HHHHH
Q 013779 4 AQSPE-LSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA---LTTAYAPGL-GVLLV 78 (436)
Q Consensus 4 ~~~p~-i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~-~~l~~ 78 (436)
+.+|. ++++ +|.|+.+.|++.+.+.++..++++++|+++||+||||++.++..+++++. ....+.+.. ..+..
T Consensus 28 ~~~~~~l~~~--~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (417)
T 2cfq_A 28 PFFPIWLHDI--NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105 (417)
T ss_dssp TTHHHHHHTT--TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCH
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 4455 89999999999999999999999999999999999999999888776532 212232222 12345
Q ss_pred HHHHHhhhhhhhhhhhhhHhhhcCcc--cchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHH
Q 013779 79 GRLLYGLGIGLAMHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG 156 (436)
Q Consensus 79 ~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~ 156 (436)
.+.+.|++.+...+.....+.++.++ ++|+...+......++|..++|.+++++.+. +||+.|++.++..++..+.
T Consensus 106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp HHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHH
Confidence 66677766666555555555555543 4556677788778899999999999988763 8999999888776655555
Q ss_pred HhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchh
Q 013779 157 MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLK 236 (436)
Q Consensus 157 ~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (436)
.++.+|+++. +. + .++.+ ++++++....++++++|+++++
T Consensus 184 ~~~~~~~~~~--------~~--~---------------~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 223 (417)
T 2cfq_A 184 LFFAKTDAPS--------SA--T---------------VANAV---------------GANHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp SCSSCCCCSC--------SS--C---------------SSSSS---------------SSCCCCCCHHHHHHHTTCHHHH
T ss_pred HHHcCccccc--------cc--c---------------ccccc---------------ccccccccHHHHHHHhcCCchh
Confidence 5555543310 00 0 00000 0000011112345677777766
Q ss_pred HHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCc---chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHH
Q 013779 237 AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSA---AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 313 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 313 (436)
...+......... .....+.|.++.+..... ....+.......++.+++.++.+++.||++||+.+..+..+.
T Consensus 224 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 224 FLSLYVIGVSCTY----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 5544322222221 123334565555432111 134466777777888899999999999999999877666666
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHH-HHHHHHHHHHHHHhhHHHH
Q 013779 314 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLK 392 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~ 392 (436)
++....+.. .++.+..+....+.. .......+..+.+..|.+|++.|+++.++. +..+.+|+.++|.+.|.+.
T Consensus 300 ~~~~~~~~~-----~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 300 SVRIIGSSF-----ATSALEVVILKTLHM-FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHTT-----CCSHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHHHHHH-----hccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 555443321 122222222222222 222222233457899999999999999984 7788899999999999999
Q ss_pred HHhCcchhHHHHHHHHHHHHhheeEecccCCCC
Q 013779 393 ELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL 425 (436)
Q Consensus 393 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (436)
+..|+...|...+++.+++.++.+...+|+++.
T Consensus 374 ~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 374 ESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 988888888888888887776655555654443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-30 Score=244.17 Aligned_cols=142 Identities=15% Similarity=0.209 Sum_probs=131.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHhhhhhhhhhhh
Q 013779 17 LSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMHGA 94 (436)
Q Consensus 17 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 94 (436)
.|..+.|++.+.+.++..++.+++|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999998 99999999999999999999999
Q ss_pred hhHhhhcCcccchhhHHHH---HHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhc
Q 013779 95 PLYIAETCPSQIRGTLISL---KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 159 (436)
Q Consensus 95 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~ 159 (436)
.+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+.. +||+.|++.+++.++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 99999999999999999988776 9999999988887766555543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=135.01 Aligned_cols=180 Identities=16% Similarity=0.050 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHH
Q 013779 239 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 318 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 318 (436)
.....+..+...........+.|.+.++. .+. .+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 107 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 107 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-hHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 33333344444333344566677777777 665 7899999999999999999999999999999999988888888777
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhC-c
Q 013779 319 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-A 397 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~ 397 (436)
+....... ..+.+..+.. .+..+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..| |
T Consensus 108 ~~~~~~~~-~~~~~~l~~~-~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w 185 (451)
T 1pw4_A 108 FMGFVPWA-TSSIAVMFVL-LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW 185 (451)
T ss_dssp HHHHCHHH-HSSSSHHHHH-HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCS
T ss_pred HHHhhhhc-cccHHHHHHH-HHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 76541110 1333333333 3344444444555666899999999999999999999999999999999999999998 9
Q ss_pred chhHHHHHHHHHHHHhheeEecccC
Q 013779 398 ENIFLLFAAIAFLAVLFIVRTVPET 422 (436)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (436)
+..|++.+++.++..++..+..+|+
T Consensus 186 ~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 186 HAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999998888777666554555543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=128.55 Aligned_cols=165 Identities=13% Similarity=0.029 Sum_probs=124.6
Q ss_pred HHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHH
Q 013779 246 LFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 325 (436)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (436)
.+.............|.+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++......
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 113 (438)
T 3o7q_A 35 FFLWAVANNLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE 113 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc
Confidence 33333333456667888888888887 88999999999999999999999999999999999998888888777632211
Q ss_pred HHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHH-HHhC--------
Q 013779 326 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-ELLG-------- 396 (436)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~-~~~g-------- 396 (436)
..+...+....+..+.......+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+. +..+
T Consensus 114 ---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 190 (438)
T 3o7q_A 114 ---IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD 190 (438)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHH
T ss_pred ---cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 2333334444444444444555566799999999999999999999999999999999999988 4444
Q ss_pred -----------------cchhHHHHHHHHHHHHhh
Q 013779 397 -----------------AENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 397 -----------------~~~~~~~~~~~~~~~~~~ 414 (436)
|++.|++.+++..+..++
T Consensus 191 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 225 (438)
T 3o7q_A 191 KMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL 225 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 677887766665555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=125.76 Aligned_cols=163 Identities=14% Similarity=0.104 Sum_probs=129.7
Q ss_pred hhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchH
Q 013779 254 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 333 (436)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (436)
.......|.+.++.+.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+..++........ +..
T Consensus 17 ~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~~~ 89 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS------SLT 89 (375)
T ss_dssp HHHHHHHHHHHTTSSSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH------HHH
T ss_pred HHHhhhhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc------cHH
Confidence 345556677788888877 7889999999999999999999999999999999998888888877766431 233
Q ss_pred HHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHHHHHHHHHh
Q 013779 334 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 413 (436)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 413 (436)
.+....+..+.......+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+.+.++..++..+
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33333344444444455666789999999999999999999999999999999999999988999999988888877776
Q ss_pred heeEecccCC
Q 013779 414 FIVRTVPETK 423 (436)
Q Consensus 414 ~~~~~~~~~~ 423 (436)
......||++
T Consensus 170 ~~~~~~~~~~ 179 (375)
T 2gfp_A 170 SMARWMPETR 179 (375)
T ss_dssp CCCCSSCCCS
T ss_pred HHHHHCcccC
Confidence 5555666654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-13 Score=126.61 Aligned_cols=155 Identities=16% Similarity=0.094 Sum_probs=118.9
Q ss_pred hHHhchHHHHHh------cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEeehhhHHHHHHHHHHHHHHHHH
Q 013779 255 SVLYYAGPILQS------AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKIL 327 (436)
Q Consensus 255 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (436)
....+.+.++++ .+.+. .+.++..+...++..++.++.|+++|| +|||+.+..+..+..++.++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----- 104 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHITR-ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHhccchhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----
Confidence 344555556654 67766 889999999999999999999999999 89999999888888877766553
Q ss_pred cCCchHHHHHHHHHHHHhhcccccccchhccccCCccc--cchhhHHHHHHHHHHHHHHHHhhHHHHHHhCcchhHHHHH
Q 013779 328 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFA 405 (436)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~ 405 (436)
.++.+. +....+..+.......+...+++.|.+|+++ |+.+.++.+....+|..++|.+.+.+.+..||+..|++.+
T Consensus 105 ~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 105 PFGASA-LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp CCSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 123333 3333334444444455666789999999988 7778888889999999999999999999999999999887
Q ss_pred HHHHHHHhhee
Q 013779 406 AIAFLAVLFIV 416 (436)
Q Consensus 406 ~~~~~~~~~~~ 416 (436)
+..+++.++..
T Consensus 184 ~~~~~~~~~~~ 194 (491)
T 4aps_A 184 IGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666655443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=119.89 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=125.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhhhh
Q 013779 17 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPL 96 (436)
Q Consensus 17 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 96 (436)
.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888999999999999999999999999999888888888888888888888888888887777777888
Q ss_pred HhhhcCcccchhhHHHH-HHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh-cCCCCh
Q 013779 97 YIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPSP 164 (436)
Q Consensus 97 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~es~ 164 (436)
++.|.+|++.|+++.++ .+....+|..++|.+++.+.+.. +++..|.+.++++++..+..+ ..||.+
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999998 47888899999999999988876 889999998888877766544 455543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=118.07 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=116.9
Q ss_pred HHhchHHHHH-hcC------CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCccEeehhhHHHHHHHHHHHHHHHHH
Q 013779 256 VLYYAGPILQ-SAG------FSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKIL 327 (436)
Q Consensus 256 ~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (436)
...+.+.+++ +.+ .+. .+.++..+...++..++.++.|+++||+ |||+.+..+..+..++.++....
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---- 105 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRG-AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---- 105 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTT-TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHhccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----
Confidence 4455666554 456 565 7889999999999999999999999999 99999888887777776665532
Q ss_pred cCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHH---HHHHHHHHHHHHHHhhHHHHHHhCcchhHHHH
Q 013779 328 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL---AVLTNFGSNAIVTFAFSPLKELLGAENIFLLF 404 (436)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~ 404 (436)
..+...+....+..+.......+...+++.|.+|+++|+++.+. .+....+|..++|.+.+.+.+..||+..|.+.
T Consensus 106 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp -SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 21333333333444444445556667899999999999876666 88889999999999999999989999999888
Q ss_pred HHHHHHHHhhe
Q 013779 405 AAIAFLAVLFI 415 (436)
Q Consensus 405 ~~~~~~~~~~~ 415 (436)
+++.+++.++.
T Consensus 185 ~~~~~~~~~~~ 195 (524)
T 2xut_A 185 GVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87776665543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=110.36 Aligned_cols=156 Identities=20% Similarity=0.100 Sum_probs=112.0
Q ss_pred CcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHH
Q 013779 7 PELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-----PGLGVLLVGRL 81 (436)
Q Consensus 7 p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~ 81 (436)
|.+.++ .+.+..+.........+...++.++.+++.||+|||+.++.+....+++.+..+.. ++...+...-+
T Consensus 301 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4gc0_A 301 PEVFKT--LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 378 (491)
T ss_dssp HHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHh--cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 344444 56677777777788888999999999999999999999998888887776665432 12222222222
Q ss_pred HHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhcccccc-----ccchHHHhhhhHHHHHHHHH
Q 013779 82 LYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-----GGWRYMYGLSAPLALLMGIG 156 (436)
Q Consensus 82 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~-----~~w~~~f~~~~~~~~~~~~~ 156 (436)
..+.......|....+.+|.+|.+.|++++++......+|..+++.+.+.+.+.. .++...|++.++++++..+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 458 (491)
T 4gc0_A 379 YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF 458 (491)
T ss_dssp HHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 2222223345677889999999999999999999999999999887766654321 14556788888888777654
Q ss_pred H-hcCCCCh
Q 013779 157 M-WSLPPSP 164 (436)
Q Consensus 157 ~-~~~~es~ 164 (436)
. +++||+.
T Consensus 459 ~~~~~PETk 467 (491)
T 4gc0_A 459 MWKFVPETK 467 (491)
T ss_dssp HHHHCCCCT
T ss_pred HHheecCCC
Confidence 4 6799984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 436 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-18 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 5e-08 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 85.5 bits (210), Expect = 1e-18
Identities = 54/423 (12%), Positives = 120/423 (28%), Gaps = 37/423 (8%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT----TAYA 70
S LG +SG ++ S++D + L +L A L
Sbjct: 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 113
Query: 71 PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 130
+ V+ V L G G+ + + RG ++S+ +G + +
Sbjct: 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173
Query: 131 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 190
+ W + A A+L+ + +++ + + A
Sbjct: 174 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ 233
Query: 191 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 250
+L + V L +
Sbjct: 234 ELTAKQI---------------------------FMQYVLPNKLLWYIA----IANVFVY 262
Query: 251 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 310
+ +L ++ L+ A ++ + + T + D + R GV
Sbjct: 263 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 322
Query: 311 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 370
+ L + Y+ G P V + ++ +G + L E+ P + G
Sbjct: 323 FFMTLVTIATIVYWMNPAGNPTVDM-ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 381
Query: 371 SLAVLT-NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEE 429
L G + + + G + F++ + LAV+ ++ + K +
Sbjct: 382 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQL 441
Query: 430 IES 432
++
Sbjct: 442 LQE 444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 52.5 bits (124), Expect = 5e-08
Identities = 49/422 (11%), Positives = 115/422 (27%), Gaps = 52/422 (12%)
Query: 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA----AVLYALGALTTAYA 70
++S G++ + +LL L ++D LG ++ L+ V++A +
Sbjct: 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97
Query: 71 PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 130
+LVG ++ G+ +G + + R + + +
Sbjct: 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157
Query: 131 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 190
I ++++ L + AL++ + ++ A +
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSA---------- 207
Query: 191 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 250
S LE+F+ P L + V
Sbjct: 208 ------------------------------FSLKLALELFRQPKLWFLSLYVIGVSCTYD 237
Query: 251 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 310
+ + ++ + +M + + G+ LL+ G
Sbjct: 238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGT 297
Query: 311 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 370
+ A + V L + ++ F +R
Sbjct: 298 IMSVRIIGSSFATS-------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY 350
Query: 371 SLAVLTNFG-SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEE 429
+ + ++ + E +G + +L+ +A L V T+ LSL
Sbjct: 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
Query: 430 IE 431
+
Sbjct: 411 RQ 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 436 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.47 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.47 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-39 Score=302.68 Aligned_cols=383 Identities=15% Similarity=0.114 Sum_probs=272.3
Q ss_pred ccccCcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccch----hHHHHHH
Q 013779 3 IAQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----GLGVLLV 78 (436)
Q Consensus 3 ~~~~p~i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~ 78 (436)
+.+.|.++ | +|+|++|+|++.+++.+++.++++++|+++||+|||+++.++.++.+++.+++++++ +++.+++
T Consensus 45 ~~~~p~~~-~--~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (447)
T d1pw4a_ 45 ALAMPYLV-E--QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 121 (447)
T ss_dssp HHHHHHTT-S--STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHH
T ss_pred HHHHHHHH-H--hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHH
Confidence 45567765 4 699999999999999999999999999999999999999999999999999988764 6789999
Q ss_pred HHHHHhhhhhhhhhhhhhHhhhcCcccchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHh
Q 013779 79 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 158 (436)
Q Consensus 79 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~ 158 (436)
.|++.|++.+...+...+++.|++|+++|++++++.+.+.++|..+++.+++.+.....+||+.|++.+.+.++..+..+
T Consensus 122 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 201 (447)
T d1pw4a_ 122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201 (447)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888776655899999998888877765554
Q ss_pred -cCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCchhH
Q 013779 159 -SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA 237 (436)
Q Consensus 159 -~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (436)
+.+|+|+... .+..++..++..++ .+.+.+.+...++...++.++++..+.
T Consensus 202 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (447)
T d1pw4a_ 202 AMMRDTPQSCG--------------------------LPPIEEYKNDYPDD--YNEKAEQELTAKQIFMQYVLPNKLLWY 253 (447)
T ss_dssp HHCCCSSTTTC--------------------------CCSCTTTCCC---------------CCTHHHHHHTSSCHHHHH
T ss_pred Hhcccchhhcc--------------------------cchhhhhhhhcccc--hhhccccccchhhHHHHHHHcCchHHH
Confidence 5566553100 00000000000000 000111111222233456667766665
Q ss_pred HHHHHHHHHHHHHhChhhHHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHH
Q 013779 238 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 317 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 317 (436)
......+..... .....+.+.++++....+..+.+.......+..+++.++.+++.||.+|++..........+..
T Consensus 254 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 329 (447)
T d1pw4a_ 254 IAIANVFVYLLR----YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 329 (447)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhh----hcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHH
Confidence 554443333332 3466677777776544444788899999999999999999999999998765544443333332
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHH-HHHHHHhhHHHHHHhC
Q 013779 318 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS-NAIVTFAFSPLKELLG 396 (436)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-~~~~~~~~~~~~~~~g 396 (436)
........ ................+.......+....+..|.+|++.|+++.|+.+...+++ ...+|.+.|.+.|..|
T Consensus 330 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g 408 (447)
T d1pw4a_ 330 IATIVYWM-NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 408 (447)
T ss_dssp HHHHHTTS-CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22222111 112223333333333344444445566688899999999999999999888875 5668999999999999
Q ss_pred cchhHHHHHHHHHHHHhheeEeccc
Q 013779 397 AENIFLLFAAIAFLAVLFIVRTVPE 421 (436)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (436)
+...+.+.+++.+++.++.....++
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 409 WDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888888777776655544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.7e-31 Score=245.18 Aligned_cols=372 Identities=14% Similarity=0.061 Sum_probs=245.0
Q ss_pred cccCc-ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHH----HHH
Q 013779 4 AQSPE-LSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV----LLV 78 (436)
Q Consensus 4 ~~~p~-i~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~----l~~ 78 (436)
|.+|. +.++ +|+|++|+|++.+++.++..++++++|+++||+||||+++++..+..++..+..+..+... .++
T Consensus 28 ~~l~~~l~~~--~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (417)
T d1pv7a_ 28 PFFPIWLHDI--NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105 (417)
T ss_dssp HHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHH
T ss_pred HHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 45554 4455 8999999999999999999999999999999999999999999999998888887665443 345
Q ss_pred HHHHHhhhhhhhhhhhhhHhhhcCcc--cchhhHHHHHHHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHH-HHH
Q 013779 79 GRLLYGLGIGLAMHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL-MGI 155 (436)
Q Consensus 79 ~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~-~~~ 155 (436)
.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+. +|+..+........+ ..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~ 183 (417)
T d1pv7a_ 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp HHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--cccccccchhhHHHHHHHH
Confidence 55666665555555555444444432 3455667788888899999999999887765 555555555554444 445
Q ss_pred HHhcCCCChHHHHHHhhcCcCccchHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHhhhhccccccccccchhhccCCch
Q 013779 156 GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 235 (436)
Q Consensus 156 ~~~~~~es~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (436)
..+..+|+++... +.+ .+++.+++.......+..+++..
T Consensus 184 ~~~~~~~~~~~~~------------~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 222 (417)
T d1pv7a_ 184 LFFAKTDAPSSAT------------VAN-----------------------------AVGANHSAFSLKLALELFRQPKL 222 (417)
T ss_dssp HHSSCCCSCSSSC------------SSH-----------------------------HHHSCCCCCCHHHHHHHTTSSHH
T ss_pred HHHHhcccccchh------------hhh-----------------------------hhhhhcccccccccccccccccc
Confidence 5556666553100 000 00000111111223333444444
Q ss_pred hHHHHHHHHHHHHHHhChhhHHhchHHHHHhcCCC---cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHH
Q 013779 236 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 312 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 312 (436)
+............... .....+.+....... +....+.......++..++..+.+++.||.++|+.+..+..+
T Consensus 223 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~ 298 (417)
T d1pv7a_ 223 WFLSLYVIGVSCTYDV----FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHh----hhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHH
Confidence 4433333333332221 222222222222111 113456667777788899999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhcccccccchhccccCCccccchhhHHHH-HHHHHHHHHHHHhhHHH
Q 013779 313 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNAIVTFAFSPL 391 (436)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~~~~ 391 (436)
..++.+.+.. .++.+.... ..+..+.......+...++..|.+|++.|+++.|+.. ....+|..++|.+.|.+
T Consensus 299 ~~~~~~~~~~-----~~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l 372 (417)
T d1pv7a_ 299 MSVRIIGSSF-----ATSALEVVI-LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp HHHHHHHHHT-----CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccc-----ccccchhhH-HHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666553 133333333 3333333333444566689999999999999999864 55779999999999999
Q ss_pred HHHhCcchhHHHHHHHHHHHHhheeEecccCCCCCHHHH
Q 013779 392 KELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 430 (436)
Q Consensus 392 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (436)
.|..|++..+++.+++.++..++..+..+++++.+.++.
T Consensus 373 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~ 411 (417)
T d1pv7a_ 373 YESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRR 411 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhHh
Confidence 999999999999998888887777777777666655443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=5.3e-14 Score=129.14 Aligned_cols=161 Identities=17% Similarity=0.071 Sum_probs=119.6
Q ss_pred HHhchHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCccEeehhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 013779 256 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 335 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (436)
+....| ++++.|.+. .+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++........ .+....+
T Consensus 44 ~~~~~p-~~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 120 (447)
T d1pw4a_ 44 FALAMP-YLVEQGFSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-SSIAVMF 120 (447)
T ss_dssp HHHHHH-HTTSSTTCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-SSSSHHH
T ss_pred HHHHHH-HHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh-hhHHHHH
Confidence 333444 456778877 8899999999999999999999999999999999998888888777665433221 2223333
Q ss_pred HHHHHHHHHhhcccccccchhccccCCccccchhhHHHHHHHHHHHHHHHHhhHHHHHHh-CcchhHHHHHHHHHHHHhh
Q 013779 336 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL-GAENIFLLFAAIAFLAVLF 414 (436)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 414 (436)
... +..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+...+.. +|+..+++.+.+.++..++
T Consensus 121 ~~~-~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 199 (447)
T d1pw4a_ 121 VLL-FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF 199 (447)
T ss_dssp HHH-HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred HHH-HHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHH
Confidence 333 33333333344555688999999999999999999999999999999888877765 5888888877777766665
Q ss_pred eeEecc
Q 013779 415 IVRTVP 420 (436)
Q Consensus 415 ~~~~~~ 420 (436)
.+...+
T Consensus 200 ~~~~~~ 205 (447)
T d1pw4a_ 200 AFAMMR 205 (447)
T ss_dssp HHHHCC
T ss_pred HHHhcc
Confidence 554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1.7e-13 Score=124.01 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=131.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhhhhhhh
Q 013779 15 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 94 (436)
Q Consensus 15 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 94 (436)
.+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCcccchhhHHHHH-HHHHHHHHHHHHHHhhccccccccchHHHhhhhHHHHHHHHHHhc
Q 013779 95 PLYIAETCPSQIRGTLISLK-ELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 159 (436)
Q Consensus 95 ~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~l~~~l~~~l~~~~~~w~~~f~~~~~~~~~~~~~~~~ 159 (436)
.+++.|.+|+++|+++.++. +....+|..++|.+++++.+.. ||+..|++.+++.++..++..+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 5567899999999999999888 9999999988888777655543
|