Citrus Sinensis ID: 013814

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------

MRLLQFAFLLALASGFAAILIYITGVSNLYYNRISDEDYEALESLQNAFRKCVSANGLGLEAVSGEDYCQVKINFPKDTVPKWRDPNTGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAWRRINKGVLLNRCQNKTLCMEKLSLVLPETPPYSPRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDKVVELDETRKEVLIVKTTIHDIMSKMIQEIPIKNPVYLMLGAAFGSAAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYHMMECLGLVKIHSPMRANPNRVVKWVPSRDKIRAARAASEKLLGMVGAGSSNPLDTCSLIKKRVKPALISSLRKAAIDHKKFVKDTTMYPLDHNPGHGQLCMVSS

cHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHcccccccccccEEccccccccccccHHHHHHHHHccccccccccccccccEEEEcccccccccccccccccccEEEEEccccccccccccccccEEEEEccccHHcccccccccccccEEEEEEEEcHHHHHHHHHcccccccHHHEEccccccccccHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHcccEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccHHHHHHHHHHHHHccccEEEcccccccccEEEEEcc

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccEEccEEEccEEEEEcccccccccccHcccccccccccccccHHHHHHHHcccccccccHHHccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccEEEEEEEccccccccccccccccccEEEEEccccccccHHHccccccEEEEcHHHHHHccccccEEcccccHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHHcHEEEEEEcccccccccEEEEcccccccccccHHHHHHHHHHHccHHEcccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHccccEEcccccccccEEEEEcc

MRLLQFAFLLALASGFAAILIYITGVSNlyynrisdeDYEALESLQNAFRKCVSanglgleavsgedycqvkinfpkdtvpkwrdpntgeleslsfDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAWRRINKGVLLNRCQNKTLCMEKlslvlpetppysprqfgrcavignsgdllktrfgkeidgydvvirengapiqnytdyvgkkstfrllnrgsakaLDKVVELDETRKEVLIVKTTIHDIMSKMIQeipiknpvYLMLGAAfgsaakgtGLKALEFALSICdsvdmygftvdpgyKEWTRYFSesrkghtplhgrAYYHMMECLGLvkihspmranpnrvvkwvpsRDKIRAARAASEKLLGMvgagssnpldtcslIKKRVKPALISSLRKAAIDHKkfvkdttmypldhnpghgqlcmvss

MRLLQFAFLLALASGFAAILIYITGVSNLYYNRISDEDYEALESLQNAFRKCVSANGLGLEAVSGEDYCQVKInfpkdtvpkwrDPNTGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAWRRINKGVLLNRCQNKTLCMEKLSLVLPETPPYSPRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTfrllnrgsakaldkvveldetrkevliVKTTIHDIMSKMIQEIPIKNPVYLMLGAAFGSAAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYHMMECLGLVKIhspmranpnrvvkwvpsrdKIRAARAASEKLLgmvgagssnpldtcSLIKKRVKPALISSLRKAAIDHKKFVKDTtmypldhnpghgqlcmvss

MRllqfafllalasgfaailIYITGVSNLYYNRISDEDYEALESLQNAFRKCVSANGLGLEAVSGEDYCQVKINFPKDTVPKWRDPNTGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAWRRINKGVLLNRCQNKTLCMEKLSLVLPETPPYSPRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDKVVELDETRKEVLIVKTTIHDIMSKMIQEIPIKNPVYLMLGAAFGSAAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYHMMECLGLVKIHSPMRANPNRVVKWVPSRDKIRAARAASEKLLGMVGAGSSNPLDTCSLIKKRVKPALISSLRKAAIDHKKFVKDTTMYPLDHNPGHGQLCMVSS

**LLQFAFLLALASGFAAILIYITGVSNLYYNRISDEDYEALESLQNAFRKCVSANGLGLEAVSGEDYCQVKINFPKDTVPKWRDPNTGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAWRRINKGVLLNRCQNKTLCMEKLSLVLPETPPYSPRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDKVVELDETRKEVLIVKTTIHDIMSKMIQEIPIKNPVYLMLGAAFGSAAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYHMMECLGLVKIHSPMRANPNRVVKWVPSRDKIRA******KLLGMVGA****PLDTCSLIKKRVKPALISSLRKAAIDHKKFVKDTTMYPL**************

*RLLQFAFLLALASGFAAILIYITGV******************LQNAFRKCVSANGLGLEAVSGEDYCQVKINFPKDTVPKWRDPNTGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAWRRINKG**********LCMEKLSLVLPETPPYSPRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDKVVELDETRKEVLIVKTTIHDIMSKMIQEIPIKNPVYLMLGAAFGSAAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYHMMECLGLVKIHSPMRAN*N**VKWVPSRDKIRAARAA****************************************HKKFVKDTTMYPLDHNPGHGQLCMVS*

*RLLQFAFLLALASGFAAILIYITGVSNLYYNRISDEDYEALESLQNAFRKCVSANGLGLEAVSGEDYCQVKINFPKDTVPKWRDPNTGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAWRRINKGVLLNRCQNKTLCMEKLSLVLPETPPYSPRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDKVVELDETRKEVLIVKTTIHDIMSKMIQEIPIKNPVYLMLGAAFGSAAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYHMMECLGLVKIHSPMRANPNRVVKWVPSRDKIRAARAASEKLLGMVGAGSSNPLDTCSLIKKRVKPALISSLRKAAIDHKKFVKDTTMYPLDHNPGHGQLCMVSS

iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		436	2.2.26 [Sep-21-2011]
Q16842		350	CMP-N-acetylneuraminate-b	yes	no	0.467	0.582	0.275	2e-16
Q6KB58		350	CMP-N-acetylneuraminate-b	yes	no	0.467	0.582	0.275	6e-16
Q11204		350	CMP-N-acetylneuraminate-b	yes	no	0.403	0.502	0.290	3e-15
Q11205		350	CMP-N-acetylneuraminate-b	yes	no	0.403	0.502	0.290	4e-15
Q02745		343	CMP-N-acetylneuraminate-b	yes	no	0.305	0.387	0.322	1e-12
Q6KB59		340	CMP-N-acetylneuraminate-b	no	no	0.353	0.452	0.295	6e-12
Q11200		342	CMP-N-acetylneuraminate-b	no	no	0.332	0.423	0.290	6e-12
Q11201		340	CMP-N-acetylneuraminate-b	no	no	0.332	0.426	0.278	1e-11
P54751		337	CMP-N-acetylneuraminate-b	no	no	0.314	0.406	0.317	1e-10
Q6ZXC9		359	CMP-N-acetylneuraminate-p	no	no	0.160	0.194	0.471	6e-10

>sp\|Q16842\|SIA4B_HUMAN CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 2 OS=Homo sapiens GN=ST3GAL2 PE=2 SV=1	Back alignment and function desciption

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 107/236 (45%), Gaps = 32/236 (13%)

Query: 112 NSTTILTKEYIDALPNGWEEYAWRRINKGVLLNRCQNKTLCMEKLSLVLPETPPY---SP 168
           N + + T+E +D  P+   +  W  +       +  N    +EKL  ++P   PY    P
Sbjct: 92  NISPVWTRENMDLPPD--VQRWWMMLQPQF---KSHNTNEVLEKLFQIVPGENPYRFRDP 146

Query: 169 RQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAK 228
            Q  RCAV+GNSG+L  + +G+++DG++ ++R N AP   +   VG ++T   +   SAK
Sbjct: 147 HQCRRCAVVGNSGNLRGSGYGQDVDGHNFIMRMNQAPTVGFEQDVGSRTTHHFMYPESAK 206

Query: 229 ALD----------KVVEL-----DETRKEVLIVKTTIHDIMSKMIQEIPIKNPVYLMLGA 273
            L           KV++L       +  ++      +   +    +++ I NP +     
Sbjct: 207 NLPANVSFVLVPFKVLDLLWIASALSTGQIRFTYAPVKSFLRVDKEKVQIYNPAFFKYIH 266

Query: 274 AFGSAAKG----TGLKALEFALSICDSVDMYGFTVDP-----GYKEWTRYFSESRK 320
              +   G    TG+  L FAL +CD V++YGF  D       Y E  RY  E RK
Sbjct: 267 DRWTEHHGRYPSTGMLVLFFALHVCDEVNVYGFGADSRGNWHHYWENNRYAGEFRK 322

It may be responsible for the synthesis of the sequence NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc- found in terminal carbohydrate groups of certain glycoproteins, oligosaccharides and glycolipids. SIAT4A and SIAT4B sialylate the same acceptor substrates but exhibit different Km values.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 4

>sp\|Q6KB58\|SIA4B_PANTR CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 2 OS=Pan troglodytes GN=ST3GAL2 PE=2 SV=1	Back alignment and function description

>sp\|Q11204\|SIA4B_MOUSE CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 2 OS=Mus musculus GN=St3gal2 PE=2 SV=2	Back alignment and function description

>sp\|Q11205\|SIA4B_RAT CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 2 OS=Rattus norvegicus GN=St3gal2 PE=2 SV=1	Back alignment and function description

>sp\|Q02745\|SIA4A_PIG CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1 OS=Sus scrofa GN=ST3GAL1 PE=1 SV=1	Back alignment and function description

>sp\|Q6KB59\|SIA4A_PANTR CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1 OS=Pan troglodytes GN=ST3GAL1 PE=2 SV=1	Back alignment and function description

>sp\|Q11200\|SIA4A_CHICK CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1 OS=Gallus gallus GN=ST3GAL1 PE=2 SV=1	Back alignment and function description

>sp\|Q11201\|SIA4A_HUMAN CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1 OS=Homo sapiens GN=ST3GAL1 PE=2 SV=1	Back alignment and function description

>sp\|P54751\|SIA4A_MOUSE CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1 OS=Mus musculus GN=St3gal1 PE=2 SV=1	Back alignment and function description

>sp\|Q6ZXC9\|SIA8D_BOVIN CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase OS=Bos taurus GN=ST8SIA4 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		436
225456455		439	PREDICTED: uncharacterized protein LOC10	0.995	0.988	0.803	0.0
255540093		442	alpha-2,8-sialyltransferase 8b, putative	0.997	0.984	0.803	0.0
351727457		442	sialyltransferase-like [Glycine max] gi\|	1.0	0.986	0.795	0.0
255639019		442	unknown [Glycine max]	1.0	0.986	0.791	0.0
225456457		430	PREDICTED: uncharacterized protein LOC10	0.977	0.990	0.795	0.0
224136298		441	predicted protein [Populus trichocarpa]	0.995	0.984	0.796	0.0
449465419		440	PREDICTED: uncharacterized protein LOC10	0.965	0.956	0.808	0.0
30693090		440	glycosyltransferase family 29 (sialyltra	0.967	0.959	0.788	0.0
297819500		440	glycosyl transferase family 29 protein [	0.965	0.956	0.790	0.0
363807842		439	uncharacterized LOC100783885 [Glycine ma	1.0	0.993	0.776	0.0

>gi\|225456455\|ref\|XP_002284431.1\| PREDICTED: uncharacterized protein LOC100243999 isoform 1 [Vitis vinifera] gi\|297734490\|emb\|CBI15737.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/437 (80%), Positives = 388/437 (88%), Gaps = 3/437 (0%)

Query: 1   MRLLQFAFLLALASGFAAILIYITGVSNLYYNRI-SDEDYEALESLQNAFRKCVSANGLG 59
           MRLLQF  +LALASGFAAI+IYI G++N+Y   + SDED  ALESLQ+ F+KCVS+NGLG
Sbjct: 1   MRLLQFGLILALASGFAAIIIYINGLANIYEKSLLSDEDLGALESLQSGFQKCVSSNGLG 60

Query: 60  LEAVSGEDYCQVKINFPKDTVPKWRDPNTGELESLSFDFNLCEAVAAWERVRNSTTILTK 119
           L+A  G DYCQV I FP DTVPKW+DP TGELE LSFDFNLCEAVA WE+VRNSTTILTK
Sbjct: 61  LQAARGRDYCQVTIKFPSDTVPKWKDPKTGELEGLSFDFNLCEAVATWEQVRNSTTILTK 120

Query: 120 EYIDALPNGWEEYAWRRINKGVLLNRCQNKTLCMEKLSLVLPETPPYSPRQFGRCAVIGN 179
           E+IDALPNGW +YAWRRINKG+LLN C+NKTLCMEKLSLVLPETPPY PRQF RCAVIGN
Sbjct: 121 EFIDALPNGWTDYAWRRINKGILLNNCKNKTLCMEKLSLVLPETPPYFPRQFDRCAVIGN 180

Query: 180 SGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDKVVELDET 239
           SGDLLKTRFGKEIDGYD VIRENGAPI+NYT YVGKKSTFRLLNRGSAKALDKVVELDET
Sbjct: 181 SGDLLKTRFGKEIDGYDAVIRENGAPIENYTAYVGKKSTFRLLNRGSAKALDKVVELDET 240

Query: 240 RKEVLIVKTTIHDIMSKMIQEIPIKNPVYLMLGAAFGSAAKGTGLKALEFALSICDSVDM 299
           RKE LI+KTT+HDIM+KMIQE+PI NPVYLMLGA+FGSAAKGTGLKALEFALSIC+SVDM
Sbjct: 241 RKEALIIKTTVHDIMNKMIQEVPIHNPVYLMLGASFGSAAKGTGLKALEFALSICESVDM 300

Query: 300 YGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYHMMECLGLVKIHSPMRANPNRVVKWVPS 359
           YGFTVDPGYKEWTRYFSESR+GHTPLHGRAYY MMECLGL+KIHSPMRA+PNR+V +VPS
Sbjct: 301 YGFTVDPGYKEWTRYFSESRQGHTPLHGRAYYQMMECLGLIKIHSPMRADPNRIVTYVPS 360

Query: 360 RDKIRAARAASEKLLGMVGAGSSNPLDTCSLIKKRVK--PALISSLRKAAIDHKKFVKDT 417
              + AAR ASEKLL  VGAGS  PL  CS+IKK+++  P  ISS+RKAA+DHK FVK  
Sbjct: 361 HSTVTAARTASEKLLRRVGAGSGEPLHACSIIKKQLQREPIGISSIRKAAVDHKNFVKGA 420

Query: 418 TMYPLDHNPGHGQLCMV 434
           TMYPL+H+PGHG LC V
Sbjct: 421 TMYPLEHSPGHGLLCTV 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255540093\|ref\|XP_002511111.1\| alpha-2,8-sialyltransferase 8b, putative [Ricinus communis] gi\|223550226\|gb\|EEF51713.1\| alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|351727457\|ref\|NP_001238441.1\| sialyltransferase-like [Glycine max] gi\|70663490\|emb\|CAJ15144.1\| sialyltransferase-like [Glycine max]	Back alignment and taxonomy information

>gi\|255639019\|gb\|ACU19810.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|225456457\|ref\|XP_002284437.1\| PREDICTED: uncharacterized protein LOC100243999 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224136298\|ref\|XP_002322294.1\| predicted protein [Populus trichocarpa] gi\|222869290\|gb\|EEF06421.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449465419\|ref\|XP_004150425.1\| PREDICTED: uncharacterized protein LOC101221492 [Cucumis sativus] gi\|449516916\|ref\|XP_004165492.1\| PREDICTED: uncharacterized protein LOC101226314 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|30693090\|ref\|NP_190451.2\| glycosyltransferase family 29 (sialyltransferase) protein [Arabidopsis thaliana] gi\|19347711\|gb\|AAL85966.1\| unknown protein [Arabidopsis thaliana] gi\|22136812\|gb\|AAM91750.1\| unknown protein [Arabidopsis thaliana] gi\|332644938\|gb\|AEE78459.1\| glycosyltransferase family 29 (sialyltransferase) protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297819500\|ref\|XP_002877633.1\| glycosyl transferase family 29 protein [Arabidopsis lyrata subsp. lyrata] gi\|297323471\|gb\|EFH53892.1\| glycosyl transferase family 29 protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|363807842\|ref\|NP_001241929.1\| uncharacterized LOC100783885 [Glycine max] gi\|70663488\|emb\|CAJ15143.1\| sialyltransferase-like protein [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		436
TAIR\|locus:2099468		440	AT3G48820 [Arabidopsis thalian	0.947	0.938	0.798	3.1e-186
TAIR\|locus:2025540		474	MGP2 "MALE GAMETOPHYTE DEFECTI	0.766	0.704	0.495	1.5e-91
UNIPROTKB\|Q6H8M9		350	siat4B "ST3 beta-galactoside a	0.261	0.325	0.327	9.1e-14
ZFIN\|ZDB-GENE-120426-1		317	st3gal1l2 "ST3 beta-galactosid	0.275	0.378	0.338	1.8e-13
UNIPROTKB\|Q16842		350	ST3GAL2 "CMP-N-acetylneuramina	0.261	0.325	0.319	2.1e-13
UNIPROTKB\|E2RR49		350	ST3GAL2 "Uncharacterized prote	0.261	0.325	0.319	3.6e-13
MGI\|MGI:99427		350	St3gal2 "ST3 beta-galactoside	0.197	0.245	0.359	3.1e-12
RGD\|68413		350	St3gal2 "ST3 beta-galactoside	0.197	0.245	0.359	3.1e-12
UNIPROTKB\|Q11205		350	St3gal2 "CMP-N-acetylneuramina	0.197	0.245	0.359	3.1e-12
ZFIN\|ZDB-GENE-060321-2		330	st3gal1l "ST3 beta-galactoside	0.204	0.269	0.358	5e-12

TAIR\|locus:2099468 AT3G48820 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1806 (640.8 bits), Expect = 3.1e-186, P = 3.1e-186
 Identities = 332/416 (79%), Positives = 379/416 (91%)

Query:    21 IYITGVSNLYY-NRISDEDYEALESLQNAFRKCVSANGLGLEAVSGEDYCQVKINFPKDT 79
             IYI GVSNLY  NR ++ED EAL+SLQN F+KCVSANGLGL+A  G DYC+V INFPKDT
Sbjct:    21 IYIIGVSNLYESNRFTNEDLEALQSLQNGFQKCVSANGLGLQAAMGRDYCKVSINFPKDT 80

Query:    80 VPKWRDPNTGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAWRRINK 139
             VPKW+DP +GELE LS++F+LCEAVA WE+VRNS+TILTKEYIDALPNGWE+YAWRRINK
Sbjct:    81 VPKWKDPKSGELEGLSYEFDLCEAVATWEQVRNSSTILTKEYIDALPNGWEDYAWRRINK 140

Query:   140 GVLLNRCQNKTLCMEKLSLVLPETPPYSPRQFGRCAVIGNSGDLLKTRFGKEIDGYDVVI 199
             G+ LNRCQNK+LC+EKLSLVLPETPPY PRQFGRCAVIGNSGDLLKT+FGKEID YD V+
Sbjct:   141 GIQLNRCQNKSLCIEKLSLVLPETPPYFPRQFGRCAVIGNSGDLLKTKFGKEIDTYDTVL 200

Query:   200 RENGAPIQNYTDYVGKKSTFRLLNRGSAKALDKVVELDETRKEVLIVKTTIHDIMSKMIQ 259
             RENGAPIQNY +YVG+KSTFRLLNRGSAKALDKVVELDE ++EVL+VKTTIHDIM+KMI+
Sbjct:   201 RENGAPIQNYKEYVGEKSTFRLLNRGSAKALDKVVELDEKKQEVLLVKTTIHDIMNKMIR 260

Query:   260 EIPIKNPVYLMLGAAFGSAAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESR 319
             E+PIKNPVYLMLGA+FGSAAKGTGLKALEFALS CDSVDMYGFTVDPGYKEWTRYFSESR
Sbjct:   261 EVPIKNPVYLMLGASFGSAAKGTGLKALEFALSTCDSVDMYGFTVDPGYKEWTRYFSESR 320

Query:   320 KGHTPLHGRAYYHMMECLGLVKIHSPMRANPNRVVKWVPSRDKIRAARAASEKLLGMVGA 379
             +GHTPLHGRAYY MMECLGL+KIHSPMRA+PNRVVKWVPSR  IR+AR A+EKLL  VGA
Sbjct:   321 QGHTPLHGRAYYQMMECLGLIKIHSPMRADPNRVVKWVPSRSTIRSARIAAEKLLRRVGA 380

Query:   380 GSSNPLDTCSLIKKRVKPA--LISSLRKAAIDHKKFVKDTTMYPLDHNPGHGQLCM 433
             GS++PL +CS++KKR K    ++S LRK   DH+KFV+ T+MYP++H+PGHGQLC+
Sbjct:   381 GSADPLASCSIVKKRNKNKRPMVSHLRKPVSDHQKFVRSTSMYPVEHSPGHGQLCI 436

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008373 "sialyltransferase activity" evidence=IEA;ISS;IDA

GO:0016020 "membrane" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR\|locus:2025540 MGP2 "MALE GAMETOPHYTE DEFECTIVE 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6H8M9 siat4B "ST3 beta-galactoside alpha-2,3-sialyltransferase 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-120426-1 st3gal1l2 "ST3 beta-galactoside alpha-2,3-sialyltransferase 1, like 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q16842 ST3GAL2 "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransfe rase 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RR49 ST3GAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:99427 St3gal2 "ST3 beta-galactoside alpha-2,3-sialyltransferase 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|68413 St3gal2 "ST3 beta-galactoside alpha-2,3-sialyltransferase 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q11205 St3gal2 "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransfe rase 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060321-2 st3gal1l "ST3 beta-galactoside alpha-2,3-sialyltransferase 1, like" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.99	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018018001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (439 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		436
pfam00777		268	pfam00777, Glyco_transf_29, Glycosyltransferase fa	5e-51

>gnl\|CDD\|216114 pfam00777, Glyco_transf_29, Glycosyltransferase family 29 (sialyltransferase)	Back alignment and domain information

 Score =  172 bits (439), Expect = 5e-51
 Identities = 63/255 (24%), Positives = 90/255 (35%), Gaps = 60/255 (23%)

Query: 141 VLLNRCQNKTLCMEKLSLVLPETPPYSPRQ---FGRCAVIGNSGDLLKTRFGKEIDGYDV 197
            L  R     L  E LS +LP+  P+  +Q     RCAV+GN G L  +  GKEID +D 
Sbjct: 25  PLGLRGSE-PLISEALSSLLPKDSPFLLKQSGRCRRCAVVGNGGILKNSSLGKEIDSHDF 83

Query: 198 VIRENGAPIQNYTDYVGKKSTFRLLNRGSAKA----LDKVVEL----------------- 236
           VIR N AP + Y   VG K+T R  N  SA      LD+                     
Sbjct: 84  VIRCNLAPTKGYEKDVGSKTTLRTFNPESAPKSYQELDRNTFFVLVPFKGLDLLWLPAFL 143

Query: 237 ------------------DETRKEVLIVKTTIHDIMSKMIQEIPIKNPVYLMLGAAFGSA 278
                                 ++V I+       ++    E P        +     S 
Sbjct: 144 TKGLGTYRSFWKYVALRIPLDPQKVRILNPEFLRYVANFWLEKPE------GIHGKRPS- 196

Query: 279 AKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESR-------KGHTPLHGRAYY 331
              TGL AL  AL +CD V +YGF           Y+   +         H   +     
Sbjct: 197 ---TGLLALTLALHLCDEVHLYGFGPFDRKPIPHHYYDNVKPKAMTFGAYHDMPYEFLLL 253

Query: 332 HMMECLGLVKIHSPM 346
             +   G++++H+  
Sbjct: 254 KRLHKQGVIRLHTGK 268

Members of this family belong to glycosyltransferase family 29. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		436
PF00777		266	Glyco_transf_29: Glycosyltransferase family 29 (si	100.0
KOG2692		376	consensus Sialyltransferase [Carbohydrate transpor	100.0
PF06002		291	CST-I: Alpha-2,3-sialyltransferase (CST-I); InterP	95.61

>PF00777 Glyco_transf_29: Glycosyltransferase family 29 (sialyltransferase); InterPro: IPR001675 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

Probab=100.00  E-value=2.6e-48  Score=377.28  Aligned_cols=193  Identities=31%  Similarity=0.443  Sum_probs=114.0

Q ss_pred             HHHHHhhhcCCCCCCCCCCC----ccceEEEcCCcCCCCCCCCCcccccceeeeecCCcccCccccCCccceEEEecccc
Q 013814          151 LCMEKLSLVLPETPPYSPRQ----FGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGS  226 (436)
Q Consensus       151 ~~~e~L~~~lP~~~p~~~~~----~~~CAVVGNsGiL~~S~~G~eID~hD~ViR~N~ap~~gfe~DVG~KTt~~~~np~s  226 (436)
                      .+.+.|..++|..+|+...+    |+|||||||||||++|+||+|||+||||||||+||++|||+|||+|||++++||++
T Consensus        34 ~i~~~l~~l~~~~~p~~~~~~~~~~~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~aP~~gfe~DVG~kT~~~~~n~~~  113 (266)
T PF00777_consen   34 KISKELYKLLPESSPFSLKHFKRRCRTCAVVGNSGILLGSGCGKEIDSHDFVIRMNLAPVKGFEKDVGSKTTLRTMNPSS  113 (266)
T ss_dssp             -HHHHHHHHTTT-S-S---TTTTG--EEEEE--BGGGTT---HHHHHTSSEEEEETT---TT-HHHH-S--SEEEEBTTB
T ss_pred             hHHHHHHHhCcccCccccccccCCCCeEEEEcCChHhccCccccccccCeeEEecCCccccccccccCccccccccChhH
Confidence            45678899999888876555    99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccccccceeEEEEcchhHH--H---------------------HHhhhccccccchHHHHhhhccC------C
Q 013814          227 AKALDKVVELDETRKEVLIVKTTIHD--I---------------------MSKMIQEIPIKNPVYLMLGAAFG------S  277 (436)
Q Consensus       227 ~~~l~~~~~l~~~~~~vl~vk~t~~d--~---------------------~~~~~~~v~i~nP~fl~~~~~f~------~  277 (436)
                      +...-+.  .++. .....+.....+  +                     ......++.+.||.+++....+|      .
T Consensus       114 ~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  190 (266)
T PF00777_consen  114 LQRRYNL--LDKD-TFLVLLPFKGSDLVWLPAFSSKKNTRKSFWAYKALEKKYPNQKVRILHPEFLRYIWRFWLRRGGRG  190 (266)
T ss_dssp             -----------TT--EEEE--SSHHHHHHHHHHTTT-----BSSSB--S-----GGGEEEB-HHHHHHHHHHTSTT---S
T ss_pred             hhhhccc--cccc-cceeccccccchhhhhhhhhccccccccccchhhhhhccCcceeeecCHHHHhhHHHHhhhhhccc
Confidence            8431011  1111 111111110000  0                     01123467899999998776542      4


Q ss_pred             CCCChHHHHHHHHHhcCCeEEEeccccCCCCCcccccccCCCC-------CCCcchhHHHHHHHHhcCcEEEEcCC
Q 013814          278 AAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRK-------GHTPLHGRAYYHMMECLGLVKIHSPM  346 (436)
Q Consensus       278 ~~pSTGll~v~lAL~lCDeVslYGF~pd~~y~~~~HYYd~~~~-------~h~~~He~~~~q~LH~~GVIrLh~g~  346 (436)
                      .+||||++++++||++||||+||||||..+...++||||+...       .|+...|+.+|++||++|||++|+|+
T Consensus       191 ~~pSTG~~~~~~Al~~CD~V~lYGF~p~~~~~~~~HYyd~~~~~~~~~~~~H~~~~E~~~~~~L~~~Gvi~l~~g~  266 (266)
T PF00777_consen  191 NRPSTGLMAVSLALHFCDEVHLYGFWPPDNRTVPYHYYDNVKPKPCFFYKNHDMPAEFRLLKRLHKQGVIKLHTGK  266 (266)
T ss_dssp             SS--HHHHHHHHHHHH-SEEEEES-S---TTS---BTTB------------S-HHHHHHHHHHHHHTTSSEEE---
T ss_pred             cCCCccHHHHHHHhcCCCeEEEEEEEecCCCCCccccccCccccccCCCCCCCCHHHHHHHHHHHHCCCeEEecCC
Confidence            6899999999999999999999999995556678999998531       25555688899999999999999985

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 29 (GT29 from CAZY) comprises enzymes with a number of known activities; sialyltransferase (2.4.99 from EC), beta-galactosamide alpha-2,6-sialyltransferase (2.4.99.1 from EC), alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (2.4.99.3 from EC), beta-galactoside alpha-2,3-sialyltransferase (2.4.99.4 from EC), N-acetyllactosaminide alpha-2,3-sialyltransferase (2.4.99.6 from EC), alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase (2.4.99.8 from EC); lactosylceramide alpha-2,3-sialyltransferase (2.4.99.9 from EC). These enzymes use a nucleotide monophosphosugar as the donor (CMP-NeuA) instead of a nucleotide diphosphosugar. Sialyltransferase may be responsible for the synthesis of the sequence NEUAC-Alpha-2,3-GAL-Beta-1,3-GALNAC-, found on sugar chains O-linked to thr or ser and also as a terminal sequenec on certain gagnliosides. These enzymes catalyse sialyltransfer reactions during glycosylation, and are type II membrane proteins.; GO: 0008373 sialyltransferase activity, 0006486 protein glycosylation, 0030173 integral to Golgi membrane; PDB: 2WNF_A 2WML_A 2WNB_A.

>KOG2692 consensus Sialyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF06002 CST-I: Alpha-2,3-sialyltransferase (CST-I); InterPro: IPR009251 This entry represents several alpha-2,3-sialyltransferase (2	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		436
2wnb_A		298	Crystal Structure Of A Mammalian Sialyltransferase		7e-14
2wml_A		298	Crystal Structure Of A Mammalian Sialyltransferase		8e-14

>pdb|2WNB|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In Complex With Disaccharide And Cmp Length = 298

Back alignment and structure

Iteration: 1

Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 19/152 (12%) Query: 173 RCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDK 232 RCAV+GNSG+L ++ +G +ID +D V+R N AP + + VG K+T + S + L + Sbjct: 99 RCAVVGNSGNLKESYYGPQIDSHDFVLRXNKAPTEGFEADVGSKTTHHFVYPESFRELAQ 158 Query: 233 -----VVELDETRKEVLIVKTTIHDIMSKMI---QEIPIKNPVYLMLGAAF--------- 275 +V T E +I TT I + +I +K L+ AF Sbjct: 159 EVSXILVPFKTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFDRWL 218 Query: 276 --GSAAKGTGLKALEFALSICDSVDMYGFTVD 305 TG+ ++ F+L ICD VD+YGF D Sbjct: 219 QGHGRYPSTGILSVIFSLHICDEVDLYGFGAD 250

PyMOL of 2wnb

>pdb|2WML|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase Length = 298

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		436
2wnf_A		298	CMP-N-acetylneuraminate-beta-galactosamide-alpha-	3e-29
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A Length = 298	Back alignment and structure

 Score =  115 bits (287), Expect = 3e-29
 Identities = 60/260 (23%), Positives = 102/260 (39%), Gaps = 35/260 (13%)

Query: 114 TTILTKEYIDALPNGWEEYAWRRINKGVLLNRCQNKTLCMEKLSLVLPETPPYS---PRQ 170
             +LT +      + ++   W R+ +    N   +     E   +V     P        
Sbjct: 41  QPLLTAKNAHLEEDTYKW--WLRLQREKQPNNLNDTI--RELFQVVPGNVDPLLEKRLVS 96

Query: 171 FGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKAL 230
             RCAV+GNSG+L ++ +G +ID +D V+R N AP + +   VG K+T   +   S + L
Sbjct: 97  CRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPTEGFEADVGSKTTHHFVYPESFREL 156

Query: 231 DK-----VVELDETRKEVLIVKTTIHDIMSKMIQ----------EIPIKNPVYLMLGAAF 275
            +     +V    T  E +I  TT   I    +           +I I +P ++      
Sbjct: 157 AQEVSMILVPFKTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFDR 216

Query: 276 GSAAKG----TGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRK--------GHT 323
                G    TG+ ++ F+L ICD VD+YGF  D     W  Y+  +           H 
Sbjct: 217 WLQGHGRYPSTGILSVIFSLHICDEVDLYGFGAD-SKGNWHHYWENNPSAGAFRKTGVHD 275

Query: 324 PLHGRAYYHMMECLGLVKIH 343
                    ++  +  ++I 
Sbjct: 276 GDFESNVTTILASINKIRIF 295

PyMOL of 2wnf

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		436
2wnf_A		298	CMP-N-acetylneuraminate-beta-galactosamide-alpha-	100.0
1ro7_A		259	Alpha-2,3/8-sialyltransferase; mixed alpha/beta, r	99.8
2p2v_A		288	Alpha-2,3-sialyltransferase; mixed alpha-beta; HET	99.76
2wqq_A		291	Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glyc	99.73

>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A	Back alignment and structure

Probab=100.00  E-value=2.3e-49  Score=391.40  Aligned_cols=202  Identities=26%  Similarity=0.437  Sum_probs=153.0

Q ss_pred             hhhhcccccccccCchhHHHHHhhhcCCCCCC-CCC---CCccceEEEcCCcCCCCCCCCCcccccceeeeecCCcccCc
Q 013814          134 WRRINKGVLLNRCQNKTLCMEKLSLVLPETPP-YSP---RQFGRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNY  209 (436)
Q Consensus       134 w~~i~~~l~L~~~~n~~~~~e~L~~~lP~~~p-~~~---~~~~~CAVVGNsGiL~~S~~G~eID~hD~ViR~N~ap~~gf  209 (436)
                      |.+++...   ...+...+.++|++++|+.+| +..   .+|++||||||||||+||+||+|||+||||||||+||++||
T Consensus        59 w~~l~~~~---~~~~~~~v~~~l~~~lP~~~~~~~~~~~~~~~~CAVVGNsGiL~~S~~G~eIDs~D~ViR~N~aP~~gy  135 (298)
T 2wnf_A           59 WLRLQREK---QPNNLNDTIRELFQVVPGNVDPLLEKRLVSCRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPTEGF  135 (298)
T ss_dssp             HHHHHCCS---SCCCHHHHHHHHTTTSCSCCCTTTTGGGCSCCEEEEECCBGGGTTCCCHHHHHTSSEEEEETTCCCTTC
T ss_pred             HHhccccc---ccccHHHHHHHHHHhCCCccccccccccCCCCeEEEECCccccCCCCccccccchhheeccCcCCcCcc
Confidence            66665431   223455667889999998877 765   79999999999999999999999999999999999999999


Q ss_pred             cccCCccceEEEecccchhhhhhhccccccceeEEEEcch--hHHHHH--------------------hhhccccccchH
Q 013814          210 TDYVGKKSTFRLLNRGSAKALDKVVELDETRKEVLIVKTT--IHDIMS--------------------KMIQEIPIKNPV  267 (436)
Q Consensus       210 e~DVG~KTt~~~~np~s~~~l~~~~~l~~~~~~vl~vk~t--~~d~~~--------------------~~~~~v~i~nP~  267 (436)
                      |+|||+|||++++||+++..+.+..       ..+++...  ...++.                    ....++.+.||.
T Consensus       136 e~DVG~KTt~~~~n~~s~~~~~~~~-------~~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~P~  208 (298)
T 2wnf_A          136 EADVGSKTTHHFVYPESFRELAQEV-------SMILVPFKTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPA  208 (298)
T ss_dssp             HHHHCSCCSEEEEBTTBCCCCCTTC-------EEEECCSSHHHHHHHHHHTTTCCCCBSSSBCCSCCCCCGGGEEEBCHH
T ss_pred             cccCccCceeEEeccccccccCCCc-------eEEEeecCccchhhhhHhhcCCcccchhhhhhHHhhccCCeEEEeCHH
Confidence            9999999999999999876432211       11111110  001111                    112457789999


Q ss_pred             HHHhhhccC----CCCCChHHHHHHHHHhcCCeEEEeccccCCCCCcccccccCCCC--------CCCcchhHHHHHHHH
Q 013814          268 YLMLGAAFG----SAAKGTGLKALEFALSICDSVDMYGFTVDPGYKEWTRYFSESRK--------GHTPLHGRAYYHMME  335 (436)
Q Consensus       268 fl~~~~~f~----~~~pSTGll~v~lAL~lCDeVslYGF~pd~~y~~~~HYYd~~~~--------~h~~~He~~~~q~LH  335 (436)
                      |+++...+|    ..+||||++++++||++||||+||||++|. ++.|+||||+...        .|+...|+.+++.||
T Consensus       209 ~~~~~~~~w~~~~~~~pSTG~~~v~lAl~~CDeV~lYGF~~d~-~~~~~HYyd~~~~~~~~~~~~~H~~~~E~~~~~~Lh  287 (298)
T 2wnf_A          209 FIKYVFDRWLQGHGRYPSTGILSVIFSLHICDEVDLYGFGADS-KGNWHHYWENNPSAGAFRKTGVHDGDFESNVTTILA  287 (298)
T ss_dssp             HHHHHHHHTSTTCSSSCCHHHHHHHHHHHHCSEEEEESCSCCT-TSCCCBTTC-----------CCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCchhHHHHHHHHHhCCEEEEeeeccCC-CCCceecccCccccccccCCCCCCcHHHHHHHHHHH
Confidence            998765432    358999999999999999999999999875 5678999998853        233333788999999


Q ss_pred             hcCcEEEEcCC
Q 013814          336 CLGLVKIHSPM  346 (436)
Q Consensus       336 ~~GVIrLh~g~  346 (436)
                      ++|+|+||+|+
T Consensus       288 ~~G~i~l~~g~  298 (298)
T 2wnf_A          288 SINKIRIFKGR  298 (298)
T ss_dssp             HTTSSEEECCC
T ss_pred             HCCCEEEEeCC
Confidence            99999999985

PyMOL of 2wnf

>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} SCOP: c.130.1.1 PDB: 1ro8_A* 2drj_A* 2x62_A* 2x61_A* 2x63_A*	Back alignment and structure

>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A	Back alignment and structure

>2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransfer; HET: CSF; 2.25A {Campylobacter jejuni}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		436
d1ro7a_		258	Alpha-2,3/8-sialyltransferase CstII {Campylobacter	98.07

>d1ro7a_ c.130.1.1 (A:) Alpha-2,3/8-sialyltransferase CstII {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Alpha-2,3/8-sialyltransferase CstII
superfamily: Alpha-2,3/8-sialyltransferase CstII
family: Alpha-2,3/8-sialyltransferase CstII
domain: Alpha-2,3/8-sialyltransferase CstII
species: Campylobacter jejuni [TaxId: 197]

Probab=98.07  E-value=7.8e-06  Score=76.64  Aligned_cols=143  Identities=14%  Similarity=0.209  Sum_probs=83.6

Q ss_pred             cceEEEcCCcCCCCCCCCCcccccceeeeecCCcccCccccCCccceEEEecccchhhh----hhhccccccceeEEEEc
Q 013814          172 GRCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKAL----DKVVELDETRKEVLIVK  247 (436)
Q Consensus       172 ~~CAVVGNsGiL~~S~~G~eID~hD~ViR~N~ap~~gfe~DVG~KTt~~~~np~s~~~l----~~~~~l~~~~~~vl~vk  247 (436)
                      +||.|+|||..|.+..++..++..| |||||.+-... +.++|.++.+.++++......    .+.........+....+
T Consensus         2 Kr~~IlGNGPSLk~iDl~~l~kd~~-vfgcN~fY~~d-~~~~~~~~d~v~~d~~v~~~~y~~~~~i~~~~~~~~~~~~~~   79 (258)
T d1ro7a_           2 KKVIIAGNGPSLKEIDYSRLPNDFD-VFRCNQFYFED-KYYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMCS   79 (258)
T ss_dssp             CEEEEECCSGGGGCCCTTSCCSSEE-EEEETTGGGCS-EETTCSEEEEEEECGGGHHHHHHHHHHHHHTTSCEEEEEEEC
T ss_pred             ceEEEEecChhcccCCHhHccCCCe-EEEEcchhhcc-hhhcCCcceEEEcccceeeccccceeeeeccchhhhhhhhcc
Confidence            6899999999999999999888777 99999887643 457999999999988754321    11010011111111111


Q ss_pred             c---h-h--HHH---HHhhhcc------ccccchHHHHhh----hccCCCCCChHHHHHHHHHhc-CCeEEEeccccCCC
Q 013814          248 T---T-I--HDI---MSKMIQE------IPIKNPVYLMLG----AAFGSAAKGTGLKALEFALSI-CDSVDMYGFTVDPG  307 (436)
Q Consensus       248 ~---t-~--~d~---~~~~~~~------v~i~nP~fl~~~----~~f~~~~pSTGll~v~lAL~l-CDeVslYGF~pd~~  307 (436)
                      .   . .  ...   .......      ..-..+.+....    ..+ ..++|||..|+.+|+.+ .++|.+.|+  |-.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~g~~alqiA~~LGfKeIYLlG~--D~y  156 (258)
T d1ro7a_          80 NYNQAHLENENFVKTFYDYFPDAHLGYDFFKQLKDFNAYFKFHEIYF-NQRITSGVYMCAVAIALGYKEIYLSGI--DFY  156 (258)
T ss_dssp             CCSCTTTSCHHHHHTHHHHSTTCEETHHHHTTSHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHTCCEEEEESC--CTT
T ss_pred             cccccchhhhhhhhhhhccccccccceEcccccCCcccceeeccccc-cCCCCHHHHHHHHHHHcCCCEEEEEee--ccC
Confidence            0   0 0  000   0000000      000112222111    112 35779999999999986 999999999  321


Q ss_pred             CCcccccccCCC
Q 013814          308 YKEWTRYFSESR  319 (436)
Q Consensus       308 y~~~~HYYd~~~  319 (436)
                      .....|+||...
T Consensus       157 ~~~~~~~ye~~~  168 (258)
T d1ro7a_         157 QNGSSYAFDTKQ  168 (258)
T ss_dssp             TTSSCCSSCCCC
T ss_pred             CCCCCccccCcc
Confidence            112348888664

PyMOL of d1ro7a_