Citrus Sinensis ID: 013893

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccEEEEEcccccccccEEEEEEEEccccccccEEEcccEEEEEEccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEEccHHHHHHHHHHHccEEccccccccccccccccEEEEEEEccEEEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHccccc
ccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHEEEcccccEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHEEEHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccEEEEEEEEEccccccccEccccEEEEEEcccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHccccEEEEcccHHHHHHHHHHccEEEccHHHccHHHcccccEEEEEEEcccEEEEEEccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHHHccc
mgfsmqpygIQSMLKEGHKHMSGLDEAVLKNIDACKQLstitrtslgpngmnKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAqqeeigdganlTISFAGEILQGAEELIRmglhpseiISGYTKAINKTIEVLEELVEEgsenmdvrnTEEVIYRMKAAVASkqfgqeeilcpliadaciqvcpknpanfnvdNVRVAKLLggglhnstiVRGMVLKSDAVGSIKNMEKAKVAVFAggvdtsatetkgtVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKlcqpnpddlgyvdsvsVEEIGGARVTIVrnegggnsVSTVVLRGSTDSILDDLERAVDDGVNTYkamcrdsrivpgAAATEIELARRLKefsfketg
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTitrtslgpngMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELveegsenmdvrnTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGgglhnstivRGMVLKSDAVGSIKNMEKAKVAVFAGgvdtsatetkgtvLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLklcqpnpddlgYVDSVSVEEIGGARvtivrnegggnsvsTVVLRGstdsilddLERAVDDGVNtykamcrdsrivpgAAATEIELArrlkefsfketg
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIevleelveeGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG
************************DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEG***MDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELA************
***************************VLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSF****
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG
******PYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKET*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNxxxxxxxxxxxxxxxxxxxxxVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query434 2.2.26 [Sep-21-2011]
Q552J0 537 T-complex protein 1 subun yes no 0.965 0.780 0.532 1e-133
Q6EE31 548 T-complex protein 1 subun yes no 0.960 0.760 0.504 1e-125
P42932 548 T-complex protein 1 subun yes no 0.960 0.760 0.507 1e-120
A8X6I9 548 T-complex protein 1 subun N/A no 0.995 0.788 0.458 1e-120
Q9N358 548 T-complex protein 1 subun yes no 0.995 0.788 0.465 1e-118
Q3ZCI9 548 T-complex protein 1 subun yes no 0.960 0.760 0.507 1e-118
Q4R5J0 548 T-complex protein 1 subun N/A no 0.960 0.760 0.502 1e-115
Q5RAP1 548 T-complex protein 1 subun yes no 0.960 0.760 0.502 1e-114
P50990 548 T-complex protein 1 subun yes no 0.960 0.760 0.502 1e-114
P78921 546 Probable T-complex protei yes no 0.967 0.769 0.466 1e-114
>sp|Q552J0|TCPQ_DICDI T-complex protein 1 subunit theta OS=Dictyostelium discoideum GN=cct8 PE=3 SV=1 Back     alignment and function desciption
 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/421 (53%), Positives = 311/421 (73%), Gaps = 2/421 (0%)

Query: 9   GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDA 68
           G+  MLK+G KH +G DEA+L+NIDA KQLS ITRTSLGPNGMNKM+INHL+KLFVTNDA
Sbjct: 3   GLTDMLKDGAKHFAGKDEAILRNIDATKQLSEITRTSLGPNGMNKMIINHLEKLFVTNDA 62

Query: 69  ATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEII 128
           ATI+ EL+V HPAAK+LV+A + Q++E+GDG N  ++  GE LQ A  L+ MGLHPSEII
Sbjct: 63  ATIIRELDVIHPAAKMLVMAAQMQEQEMGDGTNYVVTLTGEFLQKAATLLEMGLHPSEII 122

Query: 129 SGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADAC 188
           +G+ KA  K  E++E ++    +  D+ + +EV   +K+A+ASKQ+G EE L  +I +AC
Sbjct: 123 TGFEKAGAKLQEIIESMIVYNLK--DITDKKEVTKCLKSAIASKQYGYEEFLSEIITNAC 180

Query: 189 IQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGV 248
           +QV PK   NFN+DNVRV K+ GGG+ ++++++G V+  DA G+IK MEKAK+AVF  G+
Sbjct: 181 LQVLPKKAVNFNIDNVRVTKIPGGGVTDTSVIKGFVIPMDAEGTIKRMEKAKIAVFTMGI 240

Query: 249 DTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE 308
           D   TET G VLI N ++L  ++K EE  +   I A+A +G +VI+SG+ V E+ALH+ E
Sbjct: 241 DLGRTETTGKVLITNEDELLQFSKGEEDSIRETITAIANTGVKVIISGSTVSELALHYIE 300

Query: 309 RYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNE 368
           R+K+M+++I SKF+LRR C+  GA  ++KL  P P++LGY D V VEEIG  +  I R  
Sbjct: 301 RFKIMLVRIQSKFQLRRVCKAIGATPLVKLGAPIPEELGYCDEVLVEEIGSTKCCIFRQN 360

Query: 369 GGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEF 428
              + +ST+V+RGST++ILDD+ERA+DDGVN +K MC+D R + GA A EIE +R+L+ F
Sbjct: 361 KEESEISTIVVRGSTNNILDDIERAIDDGVNVFKGMCKDGRFLAGAGAFEIEASRKLQAF 420

Query: 429 S 429
           +
Sbjct: 421 A 421
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Dictyostelium discoideum (taxid: 44689)
>sp|Q6EE31|TCPQ_CHICK T-complex protein 1 subunit theta OS=Gallus gallus GN=CCT8 PE=1 SV=3 Back     alignment and function description
>sp|P42932|TCPQ_MOUSE T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3 Back     alignment and function description
>sp|A8X6I9|TCPQ_CAEBR T-complex protein 1 subunit theta OS=Caenorhabditis briggsae GN=cct-8 PE=3 SV=1 Back     alignment and function description
>sp|Q9N358|TCPQ_CAEEL T-complex protein 1 subunit theta OS=Caenorhabditis elegans GN=cct-8 PE=1 SV=3 Back     alignment and function description
>sp|Q3ZCI9|TCPQ_BOVIN T-complex protein 1 subunit theta OS=Bos taurus GN=CCT8 PE=1 SV=3 Back     alignment and function description
>sp|Q4R5J0|TCPQ_MACFA T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAP1|TCPQ_PONAB T-complex protein 1 subunit theta OS=Pongo abelii GN=CCT8 PE=2 SV=3 Back     alignment and function description
>sp|P50990|TCPQ_HUMAN T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4 Back     alignment and function description
>sp|P78921|TCPQ_SCHPO Probable T-complex protein 1 subunit theta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct8 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
356498779 545 PREDICTED: T-complex protein 1 subunit t 1.0 0.796 0.903 0.0
225441629 545 PREDICTED: T-complex protein 1 subunit t 1.0 0.796 0.907 0.0
356559540 545 PREDICTED: T-complex protein 1 subunit t 1.0 0.796 0.900 0.0
255568930517 chaperonin containing t-complex protein 1.0 0.839 0.891 0.0
449446760 545 PREDICTED: T-complex protein 1 subunit t 1.0 0.796 0.905 0.0
224145979 545 predicted protein [Populus trichocarpa] 1.0 0.796 0.898 0.0
118482230 545 unknown [Populus trichocarpa] 1.0 0.796 0.896 0.0
224123784 545 predicted protein [Populus trichocarpa] 1.0 0.796 0.903 0.0
118486950 545 unknown [Populus trichocarpa] 1.0 0.796 0.903 0.0
217074778 540 unknown [Medicago truncatula] gi|3885166 0.983 0.790 0.901 0.0
>gi|356498779|ref|XP_003518226.1| PREDICTED: T-complex protein 1 subunit theta-like [Glycine max] Back     alignment and taxonomy information
 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/434 (90%), Positives = 421/434 (97%)

Query: 1   MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 60
           MGF++QPYGIQSMLKEGHKH+SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD
Sbjct: 1   MGFNIQPYGIQSMLKEGHKHLSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 60

Query: 61  KLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRM 120
           KLFVTNDA TIVNELEVQHPAAK+LVLAGKAQQEEIGDGANLTISFAGE+LQGAEELIRM
Sbjct: 61  KLFVTNDAGTIVNELEVQHPAAKVLVLAGKAQQEEIGDGANLTISFAGELLQGAEELIRM 120

Query: 121 GLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180
           GLHPSEIISGYTKAINKT+++L+ELVE+GS+NMDVR+ E+VI RMKAAVASKQFGQE+I+
Sbjct: 121 GLHPSEIISGYTKAINKTVQILDELVEDGSDNMDVRDKEQVISRMKAAVASKQFGQEDII 180

Query: 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
           C L+ADACIQVCPKNPANFNVDNVRVAKLLGGGLHNST+VRG+VLKSDAVG+IK  EKAK
Sbjct: 181 CSLVADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTVVRGLVLKSDAVGTIKQAEKAK 240

Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVG 300
           VAVFA GVDTSATETKGTVLIH AEQLENY+KTEEAKVE LIKAVA+SGA+VIVSG AVG
Sbjct: 241 VAVFASGVDTSATETKGTVLIHTAEQLENYSKTEEAKVEELIKAVADSGAKVIVSGGAVG 300

Query: 301 EMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGA 360
           EMALHFCERYKLMVLKISSKFELRRFCRTTG+VAMLKLCQPNPDDLGYVDSVSV+EIGG 
Sbjct: 301 EMALHFCERYKLMVLKISSKFELRRFCRTTGSVAMLKLCQPNPDDLGYVDSVSVQEIGGV 360

Query: 361 RVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 420
           RVTIV+NE GGNSV+TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR VPGAAATEIE
Sbjct: 361 RVTIVKNEEGGNSVATVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRFVPGAAATEIE 420

Query: 421 LARRLKEFSFKETG 434
           LA+R+K+FSFKETG
Sbjct: 421 LAKRVKDFSFKETG 434

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225441629|ref|XP_002282088.1| PREDICTED: T-complex protein 1 subunit theta [Vitis vinifera] gi|297739754|emb|CBI29936.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559540|ref|XP_003548057.1| PREDICTED: T-complex protein 1 subunit theta-like [Glycine max] Back     alignment and taxonomy information
>gi|255568930|ref|XP_002525435.1| chaperonin containing t-complex protein 1, theta subunit, tcpq, putative [Ricinus communis] gi|223535248|gb|EEF36925.1| chaperonin containing t-complex protein 1, theta subunit, tcpq, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449446760|ref|XP_004141139.1| PREDICTED: T-complex protein 1 subunit theta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224145979|ref|XP_002325835.1| predicted protein [Populus trichocarpa] gi|222862710|gb|EEF00217.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118482230|gb|ABK93043.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224123784|ref|XP_002319163.1| predicted protein [Populus trichocarpa] gi|222857539|gb|EEE95086.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118486950|gb|ABK95308.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|217074778|gb|ACJ85749.1| unknown [Medicago truncatula] gi|388516695|gb|AFK46409.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
TAIR|locus:2095948 549 AT3G03960 [Arabidopsis thalian 1.0 0.790 0.852 6.3e-195
DICTYBASE|DDB_G0276233 537 cct8 "chaperonin containing TC 0.965 0.780 0.527 2.6e-118
ZFIN|ZDB-GENE-040426-876 546 cct8 "chaperonin containing TC 0.960 0.763 0.514 3e-117
UNIPROTKB|I3LCA2 548 CCT8 "Uncharacterized protein" 0.967 0.766 0.501 2.5e-113
UNIPROTKB|Q3ZCI9 548 CCT8 "T-complex protein 1 subu 0.967 0.766 0.498 6.6e-113
UNIPROTKB|G3X861 552 G3X861 "Uncharacterized protei 0.960 0.755 0.498 1.8e-112
UNIPROTKB|Q6EE31 548 CCT8 "T-complex protein 1 subu 0.967 0.766 0.496 2.2e-112
UNIPROTKB|E2RQ81 548 CCT8 "Uncharacterized protein" 0.967 0.766 0.494 2.2e-112
UNIPROTKB|J9NRN0 709 CCT8 "Uncharacterized protein" 0.967 0.592 0.494 2.2e-112
RGD|1305452 548 Cct8 "chaperonin containing Tc 0.967 0.766 0.496 2.2e-112
TAIR|locus:2095948 AT3G03960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1888 (669.7 bits), Expect = 6.3e-195, P = 6.3e-195
 Identities = 370/434 (85%), Positives = 401/434 (92%)

Query:     1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 60
             +G SMQPYGIQSMLKEG++H+SGLDEAV+KNI+ACK+LSTITRTSLGPNGMNKMVINHLD
Sbjct:     2 VGMSMQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLD 61

Query:    61 KLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRM 120
             KLFVTNDAATIVNELE+QHPAAKLLVLA KAQQEEIGDGANLTISFAGE+LQ AEELIRM
Sbjct:    62 KLFVTNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRM 121

Query:   121 GLHPSEIISGYTKAINKTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180
             GLHPSEIISGYTKA++K +         GSE MDVRN +EVI RM+AAVASKQFGQEEI+
Sbjct:   122 GLHPSEIISGYTKAVSKAVEILEQLVETGSETMDVRNKDEVISRMRAAVASKQFGQEEII 181

Query:   181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
             C L+ DACIQVCPKNP NFNVDNVRV+KLLGGGLHNS IVRGMVLKSDAVGSIK MEKAK
Sbjct:   182 CSLVTDACIQVCPKNPTNFNVDNVRVSKLLGGGLHNSCIVRGMVLKSDAVGSIKRMEKAK 241

Query:   241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVG 300
             VAVFAGGVDT+ATETKGTVLIH+AEQLENYAKTEEAKVE LIKAVAESGA+VIVSG ++G
Sbjct:   242 VAVFAGGVDTTATETKGTVLIHSAEQLENYAKTEEAKVEELIKAVAESGAKVIVSGGSIG 301

Query:   301 EMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGA 360
             EMALHFCERYK+MVLKISSKFELRRFCRT GAVA LKL +P+P+DLGYVDS+SVEEIGG 
Sbjct:   302 EMALHFCERYKIMVLKISSKFELRRFCRTAGAVAHLKLSRPSPEDLGYVDSISVEEIGGV 361

Query:   361 RVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 420
              VTI RNE GGNS+STVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE
Sbjct:   362 TVTIARNEEGGNSISTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 421

Query:   421 LARRLKEFSFKETG 434
             LA+RLKE++  E G
Sbjct:   422 LAQRLKEYANAEIG 435
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
DICTYBASE|DDB_G0276233 cct8 "chaperonin containing TCP1 theta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-876 cct8 "chaperonin containing TCP1, subunit 8 (theta)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LCA2 CCT8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCI9 CCT8 "T-complex protein 1 subunit theta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3X861 G3X861 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6EE31 CCT8 "T-complex protein 1 subunit theta" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQ81 CCT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NRN0 CCT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1305452 Cct8 "chaperonin containing Tcp1, subunit 8 (theta)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6EE31TCPQ_CHICKNo assigned EC number0.50470.96080.7609yesno
P42932TCPQ_MOUSENo assigned EC number0.50710.96080.7609yesno
P50990TCPQ_HUMANNo assigned EC number0.50230.96080.7609yesno
Q552J0TCPQ_DICDINo assigned EC number0.53200.96540.7802yesno
Q5RAP1TCPQ_PONABNo assigned EC number0.50230.96080.7609yesno
Q3ZCI9TCPQ_BOVINNo assigned EC number0.50710.96080.7609yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
TIGR02346 531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 0.0
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-119
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-114
cd03343517 cd03343, cpn60, cpn60 chaperonin family 8e-90
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 2e-84
COG0459 524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-79
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 2e-69
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 2e-64
cd03335 527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 6e-53
TIGR02340 536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 9e-53
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 2e-52
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 2e-51
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 2e-49
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 2e-48
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 5e-46
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 5e-46
PTZ00212 533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 2e-35
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 4e-35
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 7e-35
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 1e-34
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 1e-34
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 5e-32
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 2e-08
cd03344 520 cd03344, GroEL, GroEL_like type I chaperonin 7e-05
PRK12849 542 PRK12849, groEL, chaperonin GroEL; Reviewed 4e-04
TIGR02348 524 TIGR02348, GroEL, chaperonin GroL 5e-04
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 0.002
PLN03167 600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 0.004
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information 
 Score =  667 bits (1722), Expect = 0.0
 Identities = 268/426 (62%), Positives = 340/426 (79%), Gaps = 2/426 (0%)

Query: 9   GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDA 68
           GI S+LKEG++HMSGL+EAV+KNI+ACK+LS ITRTSLGPNGMNKMVINHLDKLFVTNDA
Sbjct: 1   GIASLLKEGYRHMSGLEEAVIKNIEACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDA 60

Query: 69  ATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEII 128
           ATI+ ELEVQHPAAKLLV+A + Q+ EIGDG NL I  AGE+L  AEELIRMGLHPSEII
Sbjct: 61  ATILRELEVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLNKAEELIRMGLHPSEII 120

Query: 129 SGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADAC 188
            GY  A+ K +EVLEELV    E  D+R+ +E+I  +KA+++SKQ+G E+ L  L+A AC
Sbjct: 121 KGYEMALKKAMEVLEELVV--WEIEDLRDKKELIKALKASISSKQYGNEDFLSQLVAKAC 178

Query: 189 IQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGV 248
             V PKNP NFNVDN+RV K++GG L NS +++GMV   +A GS+K ++KAKVAVF+  +
Sbjct: 179 STVLPKNPQNFNVDNIRVVKIMGGSLSNSEVIKGMVFNREAEGSVKRVKKAKVAVFSCPL 238

Query: 249 DTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE 308
           DT+ TETKGTVLIHNAE+L NY+K EE ++E +IKA+A+SG  VIV+G +VG+MALH+  
Sbjct: 239 DTATTETKGTVLIHNAEELLNYSKGEENQIEAMIKAIADSGVNVIVTGGSVGDMALHYLN 298

Query: 309 RYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNE 368
           RY +MVLKI SKFELRR C+T GA  + +L  P P++LGYVDSV V EIGG +VT+ + E
Sbjct: 299 RYGIMVLKIPSKFELRRLCKTVGATPLPRLGAPTPEELGYVDSVYVSEIGGDKVTVFKQE 358

Query: 369 GGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEF 428
            G + +ST++LRGST ++LDD+ERA+DDGVN  KA+ +D R +PGA ATEIELA RL ++
Sbjct: 359 NGDSRISTIILRGSTKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELASRLTKY 418

Query: 429 SFKETG 434
           + K  G
Sbjct: 419 AEKTPG 424

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 434
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02346 531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
KOG0361 543 consensus Chaperonin complex component, TCP-1 eta 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212 533 T-complex protein 1 subunit beta; Provisional 100.0
cd03335 527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02340 536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
KOG0362 537 consensus Chaperonin complex component, TCP-1 thet 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0363 527 consensus Chaperonin complex component, TCP-1 beta 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
KOG0360 545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
PRK12849 542 groEL chaperonin GroEL; Reviewed 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PRK00013 542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114 555 Heat shock protein 60; Provisional 100.0
PRK12851 541 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK12850 544 groEL chaperonin GroEL; Reviewed 100.0
PRK12852 545 groEL chaperonin GroEL; Reviewed 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PLN03167 600 Chaperonin-60 beta subunit; Provisional 100.0
PRK14104 546 chaperonin GroEL; Provisional 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0356 550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.94
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information 
Probab=100.00  E-value=2.6e-88  Score=704.49  Aligned_cols=416  Identities=30%  Similarity=0.568  Sum_probs=394.9

Q ss_pred             ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccChHHHHHHHHHHhh
Q 013893           13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ   92 (434)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~   92 (434)
                      +++++.+++++ ++++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus         4 ~~~~~~~~~~~-~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q   82 (519)
T TIGR02339         4 ILKEGTQRTKG-RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ   82 (519)
T ss_pred             cccCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            46777778888 68999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhccc
Q 013893           93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK  172 (434)
Q Consensus        93 ~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk  172 (434)
                      ++++||||||+++|+++|++++.+|+++|+||..|++||+.|++.+++.|++++++.    +..+.+.|.++++|+++||
T Consensus        83 d~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v----~~~~~~~L~~ia~tsl~sk  158 (519)
T TIGR02339        83 DAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKI----SPEDRDLLKKVAETSLTGK  158 (519)
T ss_pred             HHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccc----CcccHHHHHHHHHhhhccc
Confidence            999999999999999999999999999999999999999999999999999998873    4456789999999999999


Q ss_pred             cc--CchhhHHHHHHHHHHHhCC---CCCCCccccceEEEEcCCCCcccceeeeeEEEeecC--CCCcceeecceEEEEe
Q 013893          173 QF--GQEEILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFA  245 (434)
Q Consensus       173 ~~--~~~~~ls~Lv~~ai~~v~~---~~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~--~~~~~~~~n~kIlll~  245 (434)
                      +.  .+.++|++|+++|+..+++   ++...||+++|+|++++||+++||++++|++|++++  .+|++.++||||++++
T Consensus       159 ~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~  238 (519)
T TIGR02339       159 ASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLD  238 (519)
T ss_pred             cccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEe
Confidence            55  5789999999999999975   222358889999999999999999999999999987  4689999999999999


Q ss_pred             eeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHH
Q 013893          246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR  325 (434)
Q Consensus       246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~  325 (434)
                      ++||+++++.++++.+++++++.+++++|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus       239 ~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~r  318 (519)
T TIGR02339       239 APLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEK  318 (519)
T ss_pred             ccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCCCCceEEEEEecCCHhHHHHHHHHHHHHHHHHHHhh
Q 013893          326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC  405 (434)
Q Consensus       326 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~~~i~dal~~~~~~~  405 (434)
                      ||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. +..|||+|||+|+.+++|.+|+++||++++++++
T Consensus       319 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~  397 (519)
T TIGR02339       319 LARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKN-PKAVTILLRGGTEHVVDELERSIQDALHVVASAL  397 (519)
T ss_pred             HHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999974 8899999999999999999999999999999999


Q ss_pred             cCCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893          406 RDSRIVPGAAATEIELARRLKEFSFKETG  434 (434)
Q Consensus       406 ~~~~vvpGgG~~E~~l~~~L~~~a~~~~g  434 (434)
                      ++|++|||||++|++|+++|++++++++|
T Consensus       398 ~~~~vvpGGGa~e~~ls~~l~~~~~~~~~  426 (519)
T TIGR02339       398 EDGKVVAGGGAVEIELALRLRSYARKIGG  426 (519)
T ss_pred             cCCCEeeCCCHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999877654

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-114
3p9d_H 568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-100
1q3s_A 548 Crystal Structure Of The Chaperonin From Thermococc 4e-60
1q3r_A 548 Crystal Structure Of The Chaperonin From Thermococc 1e-59
1q2v_A 548 Crystal Structure Of The Chaperonin From Thermococc 1e-59
3ko1_A 553 Cystal Structure Of Thermosome From Acidianus Tengc 5e-53
1a6d_A 545 Thermosome From T. Acidophilum Length = 545 1e-47
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-47
3rus_A 543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 1e-45
3los_A 543 Atomic Model Of Mm-Cpn In The Closed State Length = 1e-45
3izi_A513 Mm-Cpn Rls With Atp Length = 513 5e-45
3izh_A513 Mm-Cpn D386a With Atp Length = 513 6e-45
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 9e-42
3iyf_A 521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 6e-40
1a6d_B 543 Thermosome From T. Acidophilum Length = 543 7e-40
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-39
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 2e-39
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 2e-39
3p9d_A 559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 9e-39
3iyg_A 529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-38
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-38
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 2e-38
3aq1_B 500 Open State Monomer Of A Group Ii Chaperonin From Me 6e-38
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-36
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-32
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-31
3p9d_F 546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-31
3p9d_G 550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 9e-28
3p9d_B 527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-27
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-26
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 8e-24
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 2e-07
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 6e-05
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure 
Iteration: 1

 Score =  407 bits (1045), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/413 (49%), Positives = 301/413 (72%), Gaps = 3/413 (0%)
Query: 16  EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNEL 75
           EG KH SGL+EAV +NI ACK+L+  TRT+ GPNGMNKMVINHL+KLFVTNDAATI+ EL
Sbjct: 1   EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILREL 60
Query: 76  EVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 135
           EVQHPAAK++V+A   Q++E+GDG N  + FAG +L+ AEEL+R+GL  SE+I GY  A 
Sbjct: 61  EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIAC 120
Query: 136 NKTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKN 195
            K            ++N+  R+ +EV   +  +V SKQ+G E  L  LIA AC+ + P +
Sbjct: 121 KKAHEILPDLVCCSAKNL--RDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFP-D 177
Query: 196 PANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATET 255
             +FNVDN+RV K+LG G+H+S+++ GMV K +  G + +++ AK+AV++   D   TET
Sbjct: 178 SGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITET 237
Query: 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVL 315
           KGTVLI +AE+L N++K EE  ++  +KA+A++GA V+V+G  V +MALH+  +Y +M++
Sbjct: 238 KGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLV 297
Query: 316 KISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVS 375
           +++SK++LRR C+T GA A+ +L  P  +++G+ DSV + E+G  +V + ++E    ++S
Sbjct: 298 RLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAIS 357
Query: 376 TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEF 428
           T+VLRGSTD+++DD+ERAVDDGVNT+K + RD R+VPG  ATEIELA+++  +
Sbjct: 358 TIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSY 410
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 1e-177
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 1e-177
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 2e-98
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 3e-97
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 4e-97
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 6e-97
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 8e-97
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 2e-96
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 1e-95
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 2e-95
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 2e-94
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 3e-94
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 4e-94
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 6e-94
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 4e-93
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 7e-92
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-91
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 2e-91
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 5e-91
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 2e-89
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 1e-81
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-74
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 1e-20
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 3e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
 Score =  505 bits (1303), Expect = e-177
 Identities = 209/419 (49%), Positives = 308/419 (73%), Gaps = 3/419 (0%)

Query: 16  EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNEL 75
           EG KH SGL+EAV +NI ACK+L+  TRT+ GPNGMNKMVINHL+KLFVTNDAATI+ EL
Sbjct: 1   EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILREL 60

Query: 76  EVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 135
           EVQHPAAK++V+A   Q++E+GDG N  + FAG +L+ AEEL+R+GL  SE+I GY  A 
Sbjct: 61  EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIAC 120

Query: 136 NKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKN 195
            K  E+L +LV   ++  ++R+ +EV   +  +V SKQ+G E  L  LIA AC+ + P +
Sbjct: 121 KKAHEILPDLVCCSAK--NLRDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDS 178

Query: 196 PANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATET 255
             +FNVDN+RV K+LG G+H+S+++ GMV K +  G + +++ AK+AV++   D   TET
Sbjct: 179 G-HFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITET 237

Query: 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVL 315
           KGTVLI +AE+L N++K EE  ++  +KA+A++GA V+V+G  V +MALH+  +Y +M++
Sbjct: 238 KGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLV 297

Query: 316 KISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVS 375
           +++SK++LRR C+T GA A+ +L  P  +++G+ DSV + E+G  +V + ++E    ++S
Sbjct: 298 RLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAIS 357

Query: 376 TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETG 434
           T+VLRGSTD+++DD+ERAVDDGVNT+K + RD R+VPG  ATEIELA+++  +     G
Sbjct: 358 TIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPG 416
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 100.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.1
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.09
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.02
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
Probab=100.00  E-value=1.3e-96  Score=768.94  Aligned_cols=432  Identities=43%  Similarity=0.755  Sum_probs=408.6

Q ss_pred             CCCCCCCcccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHhhccccCh
Q 013893            1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP   80 (434)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~tslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~hP   80 (434)
                      |+|++|+.+...+|++|+++++|.++++..|+.||..|++++||||||+||+|||+++.|+++|||||+|||++|+++||
T Consensus         1 ~~~~~~~~~~~~~l~~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP   80 (568)
T 3p9d_H            1 MSLRLPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHP   80 (568)
T ss_dssp             ----CCCCCCCSSCCSSCCBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCH
T ss_pred             CCCCCCCcchhhhhhcCccccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCH
Confidence            89999998999999999999999778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhCCCchHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHH
Q 013893           81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEE  160 (434)
Q Consensus        81 ~a~ll~~~~~~~~~~~GDGtts~vlLa~~ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~  160 (434)
                      +|+|++++|++|++++||||||+++||++||+++.+++.+|+||..|++||+.|++.++++|++++++...  +..+++.
T Consensus        81 ~Akll~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~--~~~~~~~  158 (568)
T 3p9d_H           81 AVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEIT--DKNDKNE  158 (568)
T ss_dssp             HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCC--CCCTTHH
T ss_pred             HHHHHHHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999987432  5567899


Q ss_pred             HHHHHHHhhcccccCchhhHHHHHHHHHHHhCCC-----CCCCccccceEEEEcCCCCcccceeeeeEEEeecCCCCcce
Q 013893          161 VIYRMKAAVASKQFGQEEILCPLIADACIQVCPK-----NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKN  235 (434)
Q Consensus       161 l~~i~~t~l~sk~~~~~~~ls~Lv~~ai~~v~~~-----~~~~~~~~~I~i~~i~Gg~~~dS~~i~G~v~~~~~~~~~~~  235 (434)
                      |.++++|+++||+.++.++|++|+++|+.+++++     +..+||+++|+|++++|++++||++++|++|++++.+||++
T Consensus       159 l~~va~tsl~sK~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~~m~~~  238 (568)
T 3p9d_H          159 LLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKS  238 (568)
T ss_dssp             HHHHHHHHHTTTSTTCHHHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBSSGGGS
T ss_pred             HHHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeecccCCcEE
Confidence            9999999999997654599999999999999874     33468999999999999999999999999999999999999


Q ss_pred             ee---cceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHHCCe
Q 013893          236 ME---KAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL  312 (434)
Q Consensus       236 ~~---n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lvl~~~~I~~~al~~l~~~~I  312 (434)
                      ++   ||||++++|+|++++++.++++.+++++++.++.++|++++++++++|.+.|+||||++++|++.+++||.++||
T Consensus       239 i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~gI  318 (568)
T 3p9d_H          239 LSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGI  318 (568)
T ss_dssp             CCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHHTC
T ss_pred             EecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHCCe
Confidence            99   999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcceeeEEEEEEcceEEEEEeecCC-CCceEEEEEecCCHhHHHHHH
Q 013893          313 MVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG-GNSVSTVVLRGSTDSILDDLE  391 (434)
Q Consensus       313 ~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIllrG~t~~~l~e~~  391 (434)
                      ++|+++++.+|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. ++++|||+|||+|+.+++|.|
T Consensus       319 ~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~e  398 (568)
T 3p9d_H          319 LVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIE  398 (568)
T ss_dssp             EEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHHHHHHHH
T ss_pred             EEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999972 378999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc--CCeEEeCCCHHHHHHHHHHHHhhhcCCC
Q 013893          392 RAVDDGVNTYKAMCR--DSRIVPGAAATEIELARRLKEFSFKETG  434 (434)
Q Consensus       392 ~~i~dal~~~~~~~~--~~~vvpGgG~~E~~l~~~L~~~a~~~~g  434 (434)
                      |+++||++++|++++  ++++|||||++|++|+.+|++++.+++|
T Consensus       399 r~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g  443 (568)
T 3p9d_H          399 RAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPG  443 (568)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCc
Confidence            999999999999999  9999999999999999999999988876
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 434
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 5e-35
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-33
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 8e-29
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 1e-27
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 1e-26
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 5e-25
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 5e-24
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 1e-16
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 2e-16
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 4e-14
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 7e-12
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 1e-09
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 9e-05
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 2e-04
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score =  127 bits (321), Expect = 5e-35
 Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 7/239 (2%)

Query: 25  DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKL 84
             A   NI+A K ++   RT+LGP GM+KM+++ +  + ++ND ATI+ E++V+HP AK+
Sbjct: 5   KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKM 64

Query: 85  LVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE 144
           +V   KAQ   +GDG    +  +GE+L+ AE L+  G+HP+ I +GY  A+N+  ++++E
Sbjct: 65  IVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDE 124

Query: 145 LVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNV 204
           + E+           E+  R+ A  A+   G+E++     A A   +      N  +D +
Sbjct: 125 IAEKSFLWGGGAVEAELAMRL-AKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPI 183

Query: 205 RVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNM---EKAKVAVFAGGVDTSATETKGTVL 260
                L        I  G+ L ++ VG +K     +  +V   A     SA E    +L
Sbjct: 184 NTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHA---LESAVEVATMIL 239
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 100.0
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.98
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.93
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.91
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.86
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.67
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.64
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.5
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.28
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.15
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.13
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.09
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.01
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 96.63
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 96.37
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 95.38
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 95.17
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 94.82
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 89.77
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 84.11
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 82.83
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 81.76
d1eo1a_124 Hypothetical protein MTH1175 {Archaeon Methanobact 81.59
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=100.00  E-value=3.3e-36  Score=264.63  Aligned_cols=165  Identities=18%  Similarity=0.363  Sum_probs=145.1

Q ss_pred             cceeeeeEEEeecC--CCCcceeecceEEEEeeeccccccccceEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE
Q 013893          216 NSTIVRGMVLKSDA--VGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVI  293 (434)
Q Consensus       216 dS~~i~G~v~~~~~--~~~~~~~~n~kIlll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lv  293 (434)
                      ||++++|++|++.+  .+||+.++||||++++++|++++++.++++.++++++++.+.++|++++++++++|.+.|||||
T Consensus         1 DS~li~Gvvi~k~~~~~~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vv   80 (168)
T d1gmla_           1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVV   80 (168)
T ss_dssp             CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred             CcEEEEEEEEecccCCcCCccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence            79999999999987  4799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcc-eeeEEEEEEcceEEEEEeecCCCC
Q 013893          294 VSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGN  372 (434)
Q Consensus       294 l~~~~I~~~al~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~  372 (434)
                      +|+++|++.+++||.++||++++++++++|+|||++|||++++++++++++++|+ |+.++++.+|+++|++|++|+. +
T Consensus        81 ~~~~~I~~~a~~~L~~~gI~~~~rv~~~dl~ria~~tga~iv~si~~l~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~  159 (168)
T d1gmla_          81 ITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKD-P  159 (168)
T ss_dssp             EESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESS-T
T ss_pred             EEcCCCCHHHHHHHHHCCCeeeccCCHHHHHHHHHHHCCceeCchhhcCcccccccccEEEEEEECCeEEEEEEecCC-C
Confidence            9999999999999999999999999999999999999999999999999999998 6777888899999999999984 8


Q ss_pred             ceEEEEEec
Q 013893          373 SVSTVVLRG  381 (434)
Q Consensus       373 ~~~TIllrG  381 (434)
                      .+|||+|||
T Consensus       160 ~~~TIllRG  168 (168)
T d1gmla_         160 KACTILLRG  168 (168)
T ss_dssp             TSCEEEEEC
T ss_pred             CEEEEEEeC
Confidence            899999998
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1eo1a_ c.55.5.1 (A:) Hypothetical protein MTH1175 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure