Citrus Sinensis ID: 013894

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
MTSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFVAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLFPLGFGLTYKKEKSLH
cccEEEcccccccccccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHcHHHHHHHHcccHHHHccccccccccccccHHHHHHHHHHcccccEEEEcccHHHHcccccccccHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHccccEEEEcccccccHHccccccEEEEEEccccccccccccccccccccHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc
HHHHHHHHHccccccccccccccccccccEcEEEEEccHHHcHHHccccEEcccHHHHHHHccHHHHHHHHccccEEEEcccEEccEEHHHcHHHHHHHHHcccccccEEEccccccHHHcccccccHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccHHHHHHHHHHHHHHcEEEEEccccccccccccccccEEEEEccccccHHHHHcccccccccccccccccEcHHHHHHHHcccccEEEEEccccHHHHHHcccccEEEEEEcccccHHHHcccccccccccHHHHHHHHccccEEEEEEcccccccHHHHHHHccEEEEEEccccEcHHHHHHHcccccccccccccEcccHHHcccccccccccccEcccccEccccccccc
mtsivsglqgrppkehpkgypyvagrnnVIACAKhfvgdggterginegntistyddlekihmapyldcisQGVCTIMASysswngrklhaDHFLLTEVLKNklgfkgfvisdwegldrlsqphgsnyrYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVesgkvpmsrIDDAVERILRVKFVAGlfeypfsdksllniVGCKLHRELAREAVRKSLVLLkngkkpekpflpldrnaKRILVVGthaddlgyqcggwtktwfgmsgkiTIGTTILEAVKEAVGDETEViyekypspdtfvagDFSFAIAavgeepyaetlgdnseliiplnggdvISLVAERIPTLailvsgrplvlepqLLEKADALVAAwlpgsegsgiadvvfgdhdftgrlpvtwyrsvqrlpmnvadntydplfplgfgltykkekslh
mtsivsglqgrppkehPKGYPYVAGRNNVIACAKHFVgdggtergineGNTISTYDDLEKIHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFeypfsdkslLNIVGCKLHRELAREAVRKSlvllkngkkpekpflpldrnAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFVAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDplfplgfgltykkekslh
MTSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFVAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLFPLGFGLTYKKEKSLH
*******************YPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGK***KPFLPLDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFVAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLFPLGFGLTY*******
MTSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFVAGDFSFAIAAVGEEPYAE**GDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLFPLGFGL**K******
MTSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFVAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLFPLGFGLTYKKEKSLH
*TSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFVAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLFPLGFGLTYKKEKSLH
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MTSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFVAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLFPLGFGLTYKKEKSLH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query434 2.2.26 [Sep-21-2011]
Q56078 765 Periplasmic beta-glucosid yes no 0.919 0.521 0.299 2e-45
P33363 765 Periplasmic beta-glucosid N/A no 0.919 0.521 0.301 6e-44
Q23892 821 Lysosomal beta glucosidas yes no 0.910 0.481 0.306 5e-39
Q0CEF3 736 Probable beta-glucosidase N/A no 0.870 0.513 0.280 2e-29
P14002 755 Thermostable beta-glucosi yes no 0.834 0.479 0.283 4e-26
Q5B9F2 737 Probable beta-glucosidase no no 0.882 0.519 0.280 7e-26
Q4WGT3 739 Probable beta-glucosidase no no 0.806 0.473 0.280 1e-25
B0YB65 739 Probable beta-glucosidase N/A no 0.806 0.473 0.280 1e-25
Q0CI67 867 Probable beta-glucosidase N/A no 0.868 0.434 0.269 3e-25
B8NGU6634 Probable beta-glucosidase N/A no 0.806 0.552 0.270 6e-24
>sp|Q56078|BGLX_SALTY Periplasmic beta-glucosidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=bglX PE=3 SV=2 Back     alignment and function desciption
 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 146/488 (29%), Positives = 233/488 (47%), Gaps = 89/488 (18%)

Query: 3   SIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTIS-TYDDLEKI 61
           ++V  +QG+ P          A R +V+   KHF   G  E G  E NT+  +   L   
Sbjct: 187 TMVKAMQGKSP----------ADRYSVMTSVKHFAAYGAVEGG-KEYNTVDMSSQRLFND 235

Query: 62  HMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLS 121
           +M PY   +  G   +M + +S NG    +D +LL +VL+++ GFKG  +SD   +  L 
Sbjct: 236 YMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRDEWGFKGITVSDHGAIKELI 295

Query: 122 QPHGS--NYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILR 179
           + HG+  +    +  A+ AG+DM M    + ++   L  L++SGKV M+ +DDA   +L 
Sbjct: 296 K-HGTAADPEDAVRVALKAGVDMSMADEYYSKY---LPGLIKSGKVTMAELDDATRHVLN 351

Query: 180 VKFVAGLFEYPFS------DKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPL 233
           VK+  GLF  P+S         +      +LHR+ ARE  R+S+VLLKN  +     LPL
Sbjct: 352 VKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVARESVVLLKNRLET----LPL 407

Query: 234 DRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKY 293
            ++   I VVG  AD      G W+      +G      T+L  ++ AVGD  +++Y K 
Sbjct: 408 KKSGT-IAVVGPLADSQRDVMGSWSA-----AGVANQSVTVLAGIQNAVGDGAKILYAKG 461

Query: 294 P------------------------SPDTFV------AGDFSFAIAAVGE-EPYAETLGD 322
                                    SP   +      A      +A VGE +  A     
Sbjct: 462 ANITNDKGIVDFLNLYEEAVKIDPRSPQAMIDEAVQAAKQADVVVAVVGESQGMAHEASS 521

Query: 323 NSELIIPLNGGDVIS-LVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSEG-SG 380
            + + IP +  D+I+ L A   P + +L++GRPL L  +  ++ADA++  W  G+EG + 
Sbjct: 522 RTNITIPQSQRDLITALKATGKPLVLVLMNGRPLALVKED-QQADAILETWFAGTEGGNA 580

Query: 381 IADVVFGDHDFTGRLPVTWYRSVQRLPMNVA---------------------DNTYDPLF 419
           IADV+FGD++ +G+LP+++ RSV ++P+  +                     D    PL+
Sbjct: 581 IADVLFGDYNPSGKLPISFPRSVGQIPVYYSHLNTGRPYNPEKPNKYTSRYFDEANGPLY 640

Query: 420 PLGFGLTY 427
           P G+GL+Y
Sbjct: 641 PFGYGLSY 648

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 1
>sp|P33363|BGLX_ECOLI Periplasmic beta-glucosidase OS=Escherichia coli (strain K12) GN=bglX PE=1 SV=2 Back     alignment and function description
>sp|Q23892|GLUA_DICDI Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2 Back     alignment and function description
>sp|Q0CEF3|BGLL_ASPTN Probable beta-glucosidase L OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=bglL PE=3 SV=1 Back     alignment and function description
>sp|P14002|BGLB_CLOTH Thermostable beta-glucosidase B OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=bglB PE=1 SV=2 Back     alignment and function description
>sp|Q5B9F2|BGLL_EMENI Probable beta-glucosidase L OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=bglL PE=3 SV=1 Back     alignment and function description
>sp|Q4WGT3|BGLL_ASPFU Probable beta-glucosidase L OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bglL PE=3 SV=1 Back     alignment and function description
>sp|B0YB65|BGLL_ASPFC Probable beta-glucosidase L OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=bglL PE=3 SV=1 Back     alignment and function description
>sp|Q0CI67|BGLF_ASPTN Probable beta-glucosidase F OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=bglF PE=3 SV=1 Back     alignment and function description
>sp|B8NGU6|BGLC_ASPFN Probable beta-glucosidase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=bglC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
224104315 603 predicted protein [Populus trichocarpa] 0.997 0.718 0.762 0.0
449465820 609 PREDICTED: lysosomal beta glucosidase-li 0.995 0.709 0.740 0.0
255569257 603 hydrolase, hydrolyzing O-glycosyl compou 0.981 0.706 0.760 0.0
356541600 707 PREDICTED: lysosomal beta glucosidase-li 0.986 0.605 0.776 0.0
147844864 639 hypothetical protein VITISV_033665 [Viti 1.0 0.679 0.752 0.0
449525031 609 PREDICTED: LOW QUALITY PROTEIN: lysosoma 0.995 0.709 0.736 0.0
297745944 586 unnamed protein product [Vitis vinifera] 1.0 0.740 0.752 0.0
225434674 720 PREDICTED: periplasmic beta-glucosidase- 1.0 0.602 0.752 0.0
15232707 608 beta-glucosidase [Arabidopsis thaliana] 0.986 0.703 0.743 0.0
334185789 644 Glycosyl hydrolase family protein [Arabi 0.997 0.672 0.730 0.0
>gi|224104315|ref|XP_002313393.1| predicted protein [Populus trichocarpa] gi|222849801|gb|EEE87348.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/433 (76%), Positives = 383/433 (88%)

Query: 1   MTSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEK 60
           M SIV+GLQG+PP+ HP GYP++AGRNNVIACAKHFVGDGGT +G+NEG+TI +Y+DLE+
Sbjct: 170 MASIVTGLQGQPPEGHPNGYPFLAGRNNVIACAKHFVGDGGTHKGLNEGDTILSYEDLER 229

Query: 61  IHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRL 120
           IHMAPYLDCISQGV TIM SYSSWNGR+LHA HFLLTEVLK+KLGFKGFVISDWE LDRL
Sbjct: 230 IHMAPYLDCISQGVGTIMVSYSSWNGRQLHAHHFLLTEVLKDKLGFKGFVISDWEALDRL 289

Query: 121 SQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRV 180
           S+P GSNYR C+STAVNAG DMVMV  +  +F +DL +L ESG++PM+RIDDAVERILRV
Sbjct: 290 SKPLGSNYRRCVSTAVNAGTDMVMVGQKHREFMKDLIFLAESGEIPMTRIDDAVERILRV 349

Query: 181 KFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRI 240
           KFVAGLFEYPF+D+SLL+IVGCKLHRELAREAVRKSLVLLKNGK P+KP LPLDR+AK+I
Sbjct: 350 KFVAGLFEYPFADRSLLDIVGCKLHRELAREAVRKSLVLLKNGKDPKKPLLPLDRSAKKI 409

Query: 241 LVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFV 300
           LV GTHAD+LGYQCGGWT  W GMSG+ITIGTTIL+A+KEA+G+ETEVIYEK PSPDT  
Sbjct: 410 LVAGTHADNLGYQCGGWTIAWNGMSGRITIGTTILDAIKEAIGEETEVIYEKIPSPDTLA 469

Query: 301 AGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQ 360
           + DFSFAI AVGE+PYAE  GDNSEL IP NG D+IS VA++IPTL IL+SGRPLV+EP 
Sbjct: 470 SQDFSFAIVAVGEDPYAEFTGDNSELAIPFNGADIISSVADKIPTLVILISGRPLVIEPW 529

Query: 361 LLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLFP 420
           LLEK D L+AAWLPG+EG GI DV+FGD+DF+GRLPVTW+R V++LPMN+ DN+ +PLFP
Sbjct: 530 LLEKIDGLIAAWLPGTEGEGITDVIFGDYDFSGRLPVTWFRKVEQLPMNLRDNSEEPLFP 589

Query: 421 LGFGLTYKKEKSL 433
           LGFGLT +   S 
Sbjct: 590 LGFGLTCEAGNSF 602

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449465820|ref|XP_004150625.1| PREDICTED: lysosomal beta glucosidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255569257|ref|XP_002525596.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gi|223535032|gb|EEF36714.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356541600|ref|XP_003539262.1| PREDICTED: lysosomal beta glucosidase-like [Glycine max] Back     alignment and taxonomy information
>gi|147844864|emb|CAN81230.1| hypothetical protein VITISV_033665 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449525031|ref|XP_004169524.1| PREDICTED: LOW QUALITY PROTEIN: lysosomal beta glucosidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297745944|emb|CBI16000.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225434674|ref|XP_002279757.1| PREDICTED: periplasmic beta-glucosidase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|15232707|ref|NP_190284.1| beta-glucosidase [Arabidopsis thaliana] gi|6522581|emb|CAB61946.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gi|17065280|gb|AAL32794.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gi|20259996|gb|AAM13345.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gi|20260350|gb|AAM13073.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gi|30725406|gb|AAP37725.1| At3g47000 [Arabidopsis thaliana] gi|332644709|gb|AEE78230.1| beta-glucosidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334185789|ref|NP_001190024.1| Glycosyl hydrolase family protein [Arabidopsis thaliana] gi|332644715|gb|AEE78236.1| Glycosyl hydrolase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
TAIR|locus:2075621608 AT3G47000 [Arabidopsis thalian 0.986 0.703 0.743 3.3e-182
TAIR|locus:2075636609 AT3G47010 [Arabidopsis thalian 0.981 0.699 0.697 1.3e-171
TAIR|locus:2075571612 AT3G47050 [Arabidopsis thalian 0.974 0.691 0.715 4.5e-169
TAIR|locus:504954860665 AT5G04885 [Arabidopsis thalian 0.993 0.648 0.539 6.1e-126
TAIR|locus:2147117624 AT5G20950 [Arabidopsis thalian 0.988 0.687 0.539 3.4e-125
TAIR|locus:2147102626 AT5G20940 [Arabidopsis thalian 0.976 0.677 0.550 8.3e-122
TAIR|locus:2081605650 AT3G62710 [Arabidopsis thalian 0.668 0.446 0.503 7.5e-73
TIGR_CMR|CPS_3740599 CPS_3740 "putative endoglucana 0.677 0.490 0.433 4.6e-57
TIGR_CMR|CPS_3725605 CPS_3725 "glycosyl hydrolase, 0.633 0.454 0.405 1.2e-49
TIGR_CMR|CPS_3739 740 CPS_3739 "periplasmic beta-glu 0.847 0.497 0.335 7.8e-47
TAIR|locus:2075621 AT3G47000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1768 (627.4 bits), Expect = 3.3e-182, P = 3.3e-182
 Identities = 319/429 (74%), Positives = 381/429 (88%)

Query:     1 MTSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEK 60
             MTS+VSGLQG PP+EHP GYP+VAGRNNV+AC KHFVGDGGT++GINEGNTI++Y++LEK
Sbjct:   178 MTSLVSGLQGVPPEEHPNGYPFVAGRNNVVACVKHFVGDGGTDKGINEGNTIASYEELEK 237

Query:    61 IHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRL 120
             IH+ PYL C++QGV T+MASYSSWNG +LHAD FLLTE+LK KLGFKGF++SDWEGLDRL
Sbjct:   238 IHIPPYLKCLAQGVSTVMASYSSWNGTRLHADRFLLTEILKEKLGFKGFLVSDWEGLDRL 297

Query:   121 SQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRV 180
             S+P GSNYRYCI TAVNAGIDMVMVP +++QF +D+T LVESG++PM+RI+DAVERILRV
Sbjct:   298 SEPQGSNYRYCIKTAVNAGIDMVMVPFKYEQFIQDMTDLVESGEIPMARINDAVERILRV 357

Query:   181 KFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKPFLPLDRNAKRI 240
             KFVAGLF +P +D+SLL  VGCK HRELA+EAVRKSLVLLK+GK  +KPFLPLDRNAKRI
Sbjct:   358 KFVAGLFGHPLTDRSLLPTVGCKEHRELAQEAVRKSLVLLKSGKNADKPFLPLDRNAKRI 417

Query:   241 LVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFV 300
             LV GTHADDLGYQCGGWTKTWFG+SG+ITIGTT+L+A+KEAVGDETEVIYEK PS +T  
Sbjct:   418 LVTGTHADDLGYQCGGWTKTWFGLSGRITIGTTLLDAIKEAVGDETEVIYEKTPSKETLA 477

Query:   301 AGD-FSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEP 359
             + + FS+AI AVGE PYAET+GDNSEL IP NG D+++ VAE IPTL IL+SGRP+VLEP
Sbjct:   478 SSEGFSYAIVAVGEPPYAETMGDNSELRIPFNGTDIVTAVAEIIPTLVILISGRPVVLEP 537

Query:   360 QLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLF 419
              +LEK +ALVAAWLPG+EG G+ADVVFGD+DF G+LPV+W++ V+ LP++   N+YDPLF
Sbjct:   538 TVLEKTEALVAAWLPGTEGQGVADVVFGDYDFKGKLPVSWFKHVEHLPLDAHANSYDPLF 597

Query:   420 PLGFGLTYK 428
             P GFGL  K
Sbjct:   598 PFGFGLNSK 606
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2075636 AT3G47010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075571 AT3G47050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954860 AT5G04885 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147117 AT5G20950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147102 AT5G20940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081605 AT3G62710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3740 CPS_3740 "putative endoglucanase A" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3725 CPS_3725 "glycosyl hydrolase, family 3" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3739 CPS_3739 "periplasmic beta-glucosidase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
PRK15098 765 PRK15098, PRK15098, beta-D-glucoside glucohydrolas 6e-59
pfam01915221 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase fam 6e-52
COG1472397 COG1472, BglX, Beta-glucosidase-related glycosidas 1e-50
pfam00933296 pfam00933, Glyco_hydro_3, Glycosyl hydrolase famil 5e-42
PLN03080 779 PLN03080, PLN03080, Probable beta-xylosidase; Prov 1e-28
PRK05337337 PRK05337, PRK05337, beta-hexosaminidase; Provision 4e-05
>gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information 
 Score =  205 bits (523), Expect = 6e-59
 Identities = 152/492 (30%), Positives = 238/492 (48%), Gaps = 99/492 (20%)

Query: 4   IVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTIST-----YDDL 58
           +V  +QG+ P          A R +V+   KHF   G  E G  + NT+       ++D 
Sbjct: 188 MVKAMQGKSP----------ADRYSVMTSVKHFALYGAVEGG-RDYNTVDMSPQRMFND- 235

Query: 59  EKIHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLD 118
              ++ PY   +  G   +M + +S NG    +D +LL ++L+++ GFKG  +SD   + 
Sbjct: 236 ---YLPPYKAGLDAGSGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIK 292

Query: 119 RLSQPHG--SNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVER 176
            L + HG  ++    +  A+ +GIDM M    + ++   L  LV+SGKV M+ +DDAV  
Sbjct: 293 ELIK-HGVAADPEDAVRLALKSGIDMSMSDEYYSKY---LPGLVKSGKVTMAELDDAVRH 348

Query: 177 ILRVKFVAGLFEYPF-------SDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEKP 229
           +L VK+  GLF  P+       SD    N    +LHR+ ARE  R+SLVLLKN       
Sbjct: 349 VLNVKYDMGLFNDPYSHLGPKESDPVDTN-AESRLHRKEAREVARESLVLLKN----RLE 403

Query: 230 FLPLDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVI 289
            LPL ++   I VVG  AD      G W+      +G      T+L+ +K AVGD+ +V+
Sbjct: 404 TLPLKKSG-TIAVVGPLADSQRDVMGSWSA-----AGVADQSVTVLQGIKNAVGDKAKVL 457

Query: 290 YEK----------------Y-------PSP-----DTFV--AGDFSFAIAAVGE-EPYAE 318
           Y K                Y       P       D  V  A      +A VGE +  A 
Sbjct: 458 YAKGANVTDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAH 517

Query: 319 TLGDNSELIIPLNGGDVIS-LVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSE 377
                +++ IP +  D+I+ L A   P + +L++GRPL L  +  ++ADA++  W  G+E
Sbjct: 518 EASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKE-DQQADAILETWFAGTE 576

Query: 378 -GSGIADVVFGDHDFTGRLPVTWYRSVQRLPM-----------------NVADNTYD--- 416
            G+ IADV+FGD++ +G+LP+++ RSV ++P+                       +D   
Sbjct: 577 GGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYNHLNTGRPYNPDKPNKYTSRYFDEAN 636

Query: 417 -PLFPLGFGLTY 427
            PL+P G+GL+Y
Sbjct: 637 GPLYPFGYGLSY 648

Length = 765
>gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal domain Back     alignment and domain information
>gnl|CDD|224389 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|216204 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain Back     alignment and domain information
>gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional Back     alignment and domain information
>gnl|CDD|235417 PRK05337, PRK05337, beta-hexosaminidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 434
PRK15098 765 beta-D-glucoside glucohydrolase; Provisional 100.0
PLN03080 779 Probable beta-xylosidase; Provisional 100.0
COG1472397 BglX Beta-glucosidase-related glycosidases [Carboh 100.0
PF00933299 Glyco_hydro_3: Glycosyl hydrolase family 3 N termi 100.0
PF01915227 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-ter 100.0
PRK05337337 beta-hexosaminidase; Provisional 100.0
PF05690247 ThiG: Thiazole biosynthesis protein ThiG; InterPro 81.47
>PRK15098 beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3e-89  Score=738.61  Aligned_cols=413  Identities=33%  Similarity=0.550  Sum_probs=350.6

Q ss_pred             eeccCCCCCCCCCCCcccccC--C------CceeeeecccccCCCCcCCCcccCCCCCHHHHHHhchHHHHHHHHcCCCc
Q 013894            5 VSGLQGRPPKEHPKGYPYVAG--R------NNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCT   76 (434)
Q Consensus         5 v~g~qg~~~~~~~~g~a~~~G--~------~gv~a~~KHFpg~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~~i~~g~~~   76 (434)
                      .|.|..||..++++|.+|++|  +      .||++|+|||||||.++.++|.....+++++|++.||+||+++|++|+.+
T Consensus       171 ~rsfgeDP~lv~~~~~a~v~GlQ~~~~~~~~gV~a~~KHFpG~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~ai~ag~~~  250 (765)
T PRK15098        171 SEGFGEDTYLTSIMGKTMVKAMQGKSPADRYSVMTSVKHFALYGAVEGGRDYNTVDMSPQRMFNDYLPPYKAGLDAGSGG  250 (765)
T ss_pred             ccCcCCCHHHHHHHHHHHHHHHcCCCCCCCCCEEEECcEEeCCCCcccCccCccCcCCHHHHHHHHHHHHHHHHHhCCCE
Confidence            366666777777777888877  3      28999999999999888887777777899999999999999999999999


Q ss_pred             eeecccCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCC--CChHHHHHHHHHcCCCeecCCCChHHHHH
Q 013894           77 IMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHG--SNYRYCISTAVNAGIDMVMVPHRFDQFFE  154 (434)
Q Consensus        77 vM~sy~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~--~~~~~~~~~al~AG~D~~l~~~~~~~~~~  154 (434)
                      |||||+.+||.|+|+|+++|+++||+||||+|+|||||++|.++.. ++  .+..+++++||+||+||+|.+..   +.+
T Consensus       251 VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ea~~~Al~AG~Dl~m~~~~---~~~  326 (765)
T PRK15098        251 VMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPEDAVRLALKSGIDMSMSDEY---YSK  326 (765)
T ss_pred             EEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHHHHHHHHHHcCCCcccCchh---HHH
Confidence            9999999999999999999999999999999999999999998764 33  35678899999999999986532   335


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCcch------hhhhcchhHHHHHHHHHhccEEEcccCCCCCC
Q 013894          155 DLTYLVESGKVPMSRIDDAVERILRVKFVAGLFEYPFSDKSL------LNIVGCKLHRELAREAVRKSLVLLKNGKKPEK  228 (434)
Q Consensus       155 ~l~~av~~g~~~~~~id~a~~ril~~k~~~gl~~~p~~~~~~------~~~~~~~~~~~la~~~a~~sivLLKN~~~~~~  228 (434)
                      .|.+||++|.+++++||+|++|||++|+++|+|++|+.+...      ...+.+++|+++++++|++|||||||    ++
T Consensus       327 ~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLLKN----~~  402 (765)
T PRK15098        327 YLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKN----RL  402 (765)
T ss_pred             HHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCCCCccccccccccccccccCCHHHHHHHHHHHHhcEEEEec----CC
Confidence            789999999999999999999999999999999999854311      12345789999999999999999999    67


Q ss_pred             CccCCCCCCCeEEEEeeccccccccCCCCceeccCCCCCccccCCHHHHHHhHcCCCcEEEEccCCC-------------
Q 013894          229 PFLPLDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPS-------------  295 (434)
Q Consensus       229 ~~LPL~~~~~kIavig~~a~~~~~~~g~~~~~~~g~~g~~~~~~t~~~~l~~~~~~~~~v~~~~~~~-------------  295 (434)
                      ++|||+++ +||+|+|++++....++|+|+..     +.+.+..|++++|++++.....+.|..+.+             
T Consensus       403 ~~LPL~~~-~~IaviG~~a~~~~~~~G~~s~~-----~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~  476 (765)
T PRK15098        403 ETLPLKKS-GTIAVVGPLADSQRDVMGSWSAA-----GVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQ  476 (765)
T ss_pred             CCCCCCCC-CEEEEECCCcccccccCCCcccc-----CccCCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhc
Confidence            89999854 79999999998876677776532     233556899999999876545666654421             


Q ss_pred             -----------------hhhhhcCCCceEEEEeeCCCCccccC-CCCCccCCcchHHHHHHHHc-CCCeEEEEEcCCcee
Q 013894          296 -----------------PDTFVAGDFSFAIAAVGEEPYAETLG-DNSELIIPLNGGDVISLVAE-RIPTLAILVSGRPLV  356 (434)
Q Consensus       296 -----------------~~~~~a~~ad~~iv~~g~~~~~~~~g-d~~~l~l~~~q~~li~~v~~-~~~~vvV~~~g~P~~  356 (434)
                                       .....++.+|++||++|.....+.|+ ||.++.||+.|.+||+++++ ++|+|||+++|+||+
T Consensus       477 ~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~~~~vVvVl~~g~P~~  556 (765)
T PRK15098        477 YEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLA  556 (765)
T ss_pred             cccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHhCcCEEEEEeCCceee
Confidence                             11223689999999999987666776 99999999999999999987 889999999999999


Q ss_pred             cCccccCCCcEEEEccCCCch-HHHHHHHHhcCCCCCcccccccccccCCcCccC-----------------CCCCC---
Q 013894          357 LEPQLLEKADALVAAWLPGSE-GSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNV-----------------ADNTY---  415 (434)
Q Consensus       357 l~~~~~~~~~ail~a~~~g~~-~~aiadvL~G~~~PsGkLPvT~p~~~~~~p~~~-----------------~~~~~---  415 (434)
                      +.++ .++++|||++|+||++ |+|+|+||||++|||||||+|||++..++|.++                 +||||   
T Consensus       557 l~~~-~~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~p~~~~~~P~~~~~~~~~~~y~e~~~~~y~yry~d~~  635 (765)
T PRK15098        557 LVKE-DQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYNHLNTGRPYNPDKPNKYTSRYFDEA  635 (765)
T ss_pred             ccch-hhcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccceeCCCCcCccccccCCCCCccccCcccccccceeccC
Confidence            9533 3589999999999999 999999999999999999999999999988632                 34777   


Q ss_pred             -CcccccccCCCCCCCCC
Q 013894          416 -DPLFPLGFGLTYKKEKS  432 (434)
Q Consensus       416 -~~~ypFG~GLsYt~~~~  432 (434)
                       +|+||||||||||+|++
T Consensus       636 ~~plypFG~GLSYT~F~y  653 (765)
T PRK15098        636 NGPLYPFGYGLSYTTFTV  653 (765)
T ss_pred             CCccccccCCCCCccEEe
Confidence             48999999999999974

>PLN03080 Probable beta-xylosidase; Provisional Back     alignment and domain information
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3 Back     alignment and domain information
>PRK05337 beta-hexosaminidase; Provisional Back     alignment and domain information
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
1ex1_A605 Beta-D-Glucan Exohydrolase From Barley Length = 605 1e-141
1lq2_A602 Crystal Structure Of Barley Beta-D-Glucan Glucohydr 1e-140
3rrx_A 822 Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Bet 1e-82
3usz_A 822 Crystal Structure Of Truncated Exo-1,31,4-Beta-Gluc 1e-82
3zyz_A 713 Crystal Structure Of A Glycoside Hydrolase Family 3 2e-22
4i8d_A 714 Crystal Structure Of Beta-D-Glucoside Glucohydrolas 2e-22
3bmx_A642 Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis 3e-14
3lk6_A616 Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) Fro 7e-14
4gyj_A648 Crystal Structure Of Mutant (D318n) Bacillus Subtil 9e-14
2x40_A 721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 9e-13
2x42_A 721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 9e-12
3sql_A535 Crystal Structure Of Glycoside Hydrolase From Synec 3e-09
4i3g_A 829 Crystal Structure Of Desr, A Beta-glucosidase From 1e-08
3ac0_A 845 Crystal Structure Of Beta-Glucosidase From Kluyvero 3e-08
3ac0_A 845 Crystal Structure Of Beta-Glucosidase From Kluyvero 6e-06
3abz_A 845 Crystal Structure Of Se-Met Labeled Beta-Glucosidas 2e-06
3abz_A 845 Crystal Structure Of Se-Met Labeled Beta-Glucosidas 1e-05
3gs6_A340 Vibrio Cholerea Family 3 Glycoside Hydrolase (Nagz) 2e-04
2oxn_A340 Vibrio Cholerae Family 3 Glycoside Hydrolase (Nagz) 2e-04
1y65_A342 Crystal Structure Of Beta-Hexosaminidase From Vibri 2e-04
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley Length = 605 Back     alignment and structure 
Iteration: 1

 Score =  497 bits (1280), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/432 (56%), Positives = 306/432 (70%), Gaps = 2/432 (0%)
Query: 1   MTSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEK 60
           MT ++ GLQG  PK+   G P+VAG+N V ACAKHFVGDGGT  GINE NTI   + L  
Sbjct: 173 MTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMN 232
Query: 61  IHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRL 120
           IHM  Y + + +GV T+M SYSSWNG K+HA+  L+T  LK+ L FKGFVISDWEG+DR+
Sbjct: 233 IHMPAYKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRI 292
Query: 121 SQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRV 180
           + P GS+Y Y +  ++ AG+DM+MVP+++ QF   LT  V  G +PMSRIDDAV RILRV
Sbjct: 293 TTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRV 352
Query: 181 KFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGK-KPEKPFLPLDRNAKR 239
           KF  GLFE P++D ++   +G + HR+LAREA RKSLVLLKNGK   + P LPL + A +
Sbjct: 353 KFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPKKAPK 412
Query: 240 ILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTF 299
           ILV G+HAD+LGYQCGGWT  W G +G+ T+GTTILEAVK AV   T V++ + P  +  
Sbjct: 413 ILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVVFAENPDAEFV 472
Query: 300 VAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEP 359
            +G FS+AI AVGE PY ET GDN  L IP  G   +  V   +    +L+SGRP+V++P
Sbjct: 473 KSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQP 532
Query: 360 QLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLF 419
            LL  +DALVAAWLPGSEG G+ D +FGD  FTGRLP TW++SV +LPMNV D  YDPLF
Sbjct: 533 -LLAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLF 591
Query: 420 PLGFGLTYKKEK 431
            LG+GLT    K
Sbjct: 592 RLGYGLTTNATK 603
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole Length = 602 Back     alignment and structure
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 Back     alignment and structure
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 Back     alignment and structure
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3 Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a Resolution. Length = 713 Back     alignment and structure
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From Trichoderma Reesei Length = 714 Back     alignment and structure
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis Length = 642 Back     alignment and structure
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From Bacillus Subtilis Length = 616 Back     alignment and structure
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus Family 3 Glycoside Hydrolase (Nagz) In Complex With Glcnac-Murnac (Space Group P1) Length = 648 Back     alignment and structure
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Glycerol Length = 721 Back     alignment and structure
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose Length = 721 Back     alignment and structure
>pdb|3SQL|A Chain A, Crystal Structure Of Glycoside Hydrolase From Synechococcus Length = 535 Back     alignment and structure
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 Back     alignment and structure
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 Back     alignment and structure
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 Back     alignment and structure
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 Back     alignment and structure
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 Back     alignment and structure
>pdb|3GS6|A Chain A, Vibrio Cholerea Family 3 Glycoside Hydrolase (Nagz)in Complex With N- Butyryl-Pugnac Length = 340 Back     alignment and structure
>pdb|2OXN|A Chain A, Vibrio Cholerae Family 3 Glycoside Hydrolase (Nagz) In Complex With Pugnac Length = 340 Back     alignment and structure
>pdb|1Y65|A Chain A, Crystal Structure Of Beta-Hexosaminidase From Vibrio Cholerae In Complex With N-Acetyl-D-Glucosamine To A Resolution Of 1.85 Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 0.0
3rrx_A 822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 1e-175
2x41_A 721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 2e-88
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 5e-57
3abz_A 845 Beta-glucosidase I; glycoside hydrolase family3 be 3e-40
3abz_A 845 Beta-glucosidase I; glycoside hydrolase family3 be 1e-17
3sql_A535 Glycosyl hydrolase family 3; structural genomics, 1e-36
3tev_A351 Glycosyl hyrolase, family 3; PSI-biology, midwest 5e-16
4g6c_A342 Beta-hexosaminidase 1; ssgcid, niaid, structural g 2e-11
2oxn_A340 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 Back     alignment and structure
 Score =  615 bits (1589), Expect = 0.0
 Identities = 241/428 (56%), Positives = 303/428 (70%), Gaps = 2/428 (0%)

Query: 1   MTSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEK 60
           MT ++ GLQG  PK+   G P+VAG+N V ACAKHFVGDGGT  GINE NTI   + L  
Sbjct: 173 MTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMN 232

Query: 61  IHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRL 120
           IHM  Y + + +GV T+M SYSSWNG K+HA+  L+T  LK+ L FKGFVISDWEG+DR+
Sbjct: 233 IHMPAYKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRI 292

Query: 121 SQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESGKVPMSRIDDAVERILRV 180
           + P GS+Y Y +  ++ AG+DM+MVP+++ QF   LT  V  G +PMSRIDDAV RILRV
Sbjct: 293 TTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRV 352

Query: 181 KFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKN-GKKPEKPFLPLDRNAKR 239
           KF  GLFE P++D ++   +G + HR+LAREA RKSLVLLKN     + P LPL + A +
Sbjct: 353 KFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPKKAPK 412

Query: 240 ILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTF 299
           ILV G+HAD+LGYQCGGWT  W G +G+ T+GTTILEAVK AV   T V++ + P  +  
Sbjct: 413 ILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVVFAENPDAEFV 472

Query: 300 VAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEP 359
            +G FS+AI AVGE PY ET GDN  L IP  G   +  V   +    +L+SGRP+V++P
Sbjct: 473 KSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQP 532

Query: 360 QLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVTWYRSVQRLPMNVADNTYDPLF 419
            LL  +DALVAAWLPGSEG G+ D +FGD  FTGRLP TW++SV +LPMNV D  YDPLF
Sbjct: 533 -LLAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLF 591

Query: 420 PLGFGLTY 427
            LG+GLT 
Sbjct: 592 RLGYGLTT 599
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Length = 822 Back     alignment and structure
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Length = 642 Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Length = 535 Back     alignment and structure
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Length = 351 Back     alignment and structure
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Length = 340 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 100.0
3rrx_A 822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 100.0
3abz_A 845 Beta-glucosidase I; glycoside hydrolase family3 be 100.0
3zyz_A 713 Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.1 100.0
2x41_A 721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 100.0
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 100.0
3sql_A535 Glycosyl hydrolase family 3; structural genomics, 100.0
3tev_A351 Glycosyl hyrolase, family 3; PSI-biology, midwest 100.0
4g6c_A348 Beta-hexosaminidase 1; ssgcid, niaid, structural g 100.0
4gvf_A349 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: N 100.0
2oxn_A340 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O 100.0
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-98  Score=794.09  Aligned_cols=422  Identities=56%  Similarity=0.991  Sum_probs=377.3

Q ss_pred             eeeccCCCCCCCCCCCcccccCCCceeeeecccccCCCCcCCCcccCCCCCHHHHHHhchHHHHHHHHcCCCceeecccC
Q 013894            4 IVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCTIMASYSS   83 (434)
Q Consensus         4 ~v~g~qg~~~~~~~~g~a~~~G~~gv~a~~KHFpg~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~~i~~g~~~vM~sy~~   83 (434)
                      ||+|||++.+..+..|..|+.+..||++|+|||||||+++.++|...+.+++++|+|+||+||+++|++|+.+|||||+.
T Consensus       176 ~v~GlQ~~~~~~~~~~~~~~~~~~gV~a~~KHFpg~g~~~~~~~~~~~~~~~~~l~e~~l~pF~~ai~ag~~~vM~sy~~  255 (602)
T 1x38_A          176 LIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKNAMDKGVSTVMISYSS  255 (602)
T ss_dssp             HHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCGGGCTTCEECCCHHHHHHHTSHHHHHHHHTTCCEEEECSSE
T ss_pred             HHHHhcCCCccccccccccccccCCeEEEeccccCCCccccCcccccCcCCHHHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence            55555553322222222222222599999999999999988878777789999999999999999999999999999999


Q ss_pred             CCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHHHHHHHHCC
Q 013894           84 WNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVESG  163 (434)
Q Consensus        84 ~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g  163 (434)
                      +||+|+|+|+++|++|||+||||+|+|||||++|.++...++.+..+++++|++||+||+|+|.++..+.+.|.+||++|
T Consensus       256 v~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~~~~~~~~~~~~~~~~a~~~al~AG~D~~m~~~~~~~~~~~l~~av~~G  335 (602)
T 1x38_A          256 WNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGG  335 (602)
T ss_dssp             ETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGSSSTTTTHHHHHHHHHHHTCCBEECCSCHHHHHHHHHHHHHTT
T ss_pred             cCCccccCCHHHHHHHhhcccCCCeEEEccchHHHHHHhhcCCCHHHHHHHHHHcCCCcccCCcchhhHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999998767767788999999999999999988877889999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCCCCCCCCcchhhhhcchhHHHHHHHHHhccEEEcccCCCCCC--C---ccCCCCCCC
Q 013894          164 KVPMSRIDDAVERILRVKFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKSLVLLKNGKKPEK--P---FLPLDRNAK  238 (434)
Q Consensus       164 ~~~~~~id~a~~ril~~k~~~gl~~~p~~~~~~~~~~~~~~~~~la~~~a~~sivLLKN~~~~~~--~---~LPL~~~~~  238 (434)
                      .++++|||+|++|||++|+++|+|++|+.+......+++++|+++++++|++|||||||    ++  +   +|||+++.+
T Consensus       336 ~i~~~~id~av~RiL~~k~~~glf~~p~~~~~~~~~~~~~~~~~la~~~a~~sivLLKN----~~~~~~~~~LPL~~~~~  411 (602)
T 1x38_A          336 VIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKSLVLLKN----GKTSTDAPLLPLPKKAP  411 (602)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHTTTTTCCSCCGGGGGGTTCHHHHHHHHHHHHHHCEEEEE----CSSTTSCCCCSCCSCCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCCCCCcchhhccCCHHHHHHHHHHHHhceEEecc----CCCCCcccccccCCCCC
Confidence            99999999999999999999999999987655445789999999999999999999999    55  4   999987568


Q ss_pred             eEEEEeeccccccccCCCCceeccCCCCCccccCCHHHHHHhHcCCCcEEEEccCCChhhhhcCCCceEEEEeeCCCCcc
Q 013894          239 RILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTILEAVKEAVGDETEVIYEKYPSPDTFVAGDFSFAIAAVGEEPYAE  318 (434)
Q Consensus       239 kIavig~~a~~~~~~~g~~~~~~~g~~g~~~~~~t~~~~l~~~~~~~~~v~~~~~~~~~~~~a~~ad~~iv~~g~~~~~~  318 (434)
                      ||+|+|++++....++|+|+..|++.++......++++++++++.....+.|..+++.....++.+|++||++|.+++.+
T Consensus       412 ~iaviG~~A~~~~~~~gg~~~~~~g~~~~~~~~~t~~~~l~~~~~~~~~v~~~~~~~~~~~~a~~aD~viv~~g~~~~~e  491 (602)
T 1x38_A          412 KILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTE  491 (602)
T ss_dssp             EEEEESTTTTCHHHHHCSSSSSTTCCSSCCSSCBCHHHHHHHHSCTTCEEEEESSCCHHHHHHTTCSCEEEEEECCCCCG
T ss_pred             EEEEEcCCCccccccCCcceeeccCCCCCCCCcccHHHHHHHHhCCCeEEEEcCCCCHHHHHHhhCCEEEEEeccCcccc
Confidence            99999999998878899999888887666667789999999987766788888877655555789999999999988888


Q ss_pred             ccCCCCCccCCcchHHHHHHHHcCCCeEEEEEcCCceecCccccCCCcEEEEccCCCchHHHHHHHHhcCCCCCcccccc
Q 013894          319 TLGDNSELIIPLNGGDVISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRLPVT  398 (434)
Q Consensus       319 ~~gd~~~l~l~~~q~~li~~v~~~~~~vvV~~~g~P~~l~~~~~~~~~ail~a~~~g~~~~aiadvL~G~~~PsGkLPvT  398 (434)
                      .+|||.++.||..|.+||+++++++|+|||+++|+|+.+.+| .++++|||++|+||++++|+||||||++||+||||+|
T Consensus       492 ~~gdr~~l~lp~~q~~li~~v~~~~~~VvVl~~g~P~~l~~~-~~~~~Ail~a~~pG~~g~AiadvL~G~~nPsGkLP~t  570 (602)
T 1x38_A          492 TKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQPL-LAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRT  570 (602)
T ss_dssp             GGGCCSSCCCCSSSHHHHHHHHTTSCEEEEEECSSCCCCHHH-HHHCSEEEEEECCCSBTHHHHHHHTTSSCCCCCCSSC
T ss_pred             cCCCcCCcCCChhHHHHHHHHHhCCCEEEEEeCCCceeccch-hhccCeEEeccCCchHHHHHHHHHcCCCCCCccCccc
Confidence            888999999999999999999988899999999999999888 8999999999999999999999999999999999999


Q ss_pred             cccccCCcCccCCCCCCCcccccccCCCCCCC
Q 013894          399 WYRSVQRLPMNVADNTYDPLFPLGFGLTYKKE  430 (434)
Q Consensus       399 ~p~~~~~~p~~~~~~~~~~~ypFG~GLsYt~~  430 (434)
                      ||++.+|+|.++|||+|+|+||||||||||+.
T Consensus       571 ~p~~~~~~p~~~g~~~~~plypFG~GLSYt~~  602 (602)
T 1x38_A          571 WFKSVDQLPMNVGDAHYDPLFRLGYGLTTNAT  602 (602)
T ss_dssp             BCSCGGGCSCCTTCSSCCCSBCTTCCBCCCCC
T ss_pred             ccCccccCCccCCCCCCCccCcCCCCcCCCCC
Confidence            99999999999999999999999999999863
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Back     alignment and structure
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A* Back     alignment and structure
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Back     alignment and structure
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Back     alignment and structure
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A* Back     alignment and structure
>4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A* Back     alignment and structure
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 434
d1x38a2214 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, 6e-58
d1x38a1388 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-te 1e-57
d1tr9a_330 c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio chol 1e-13
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 214 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Beta-D-glucan exohydrolase, C-terminal domain
family: Beta-D-glucan exohydrolase, C-terminal domain
domain: Beta-D-glucan exohydrolase, C-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  187 bits (475), Expect = 6e-58
 Identities = 120/213 (56%), Positives = 148/213 (69%), Gaps = 2/213 (0%)

Query: 217 LVLLKNGKK-PEKPFLPLDRNAKRILVVGTHADDLGYQCGGWTKTWFGMSGKITIGTTIL 275
           LVLLKNGK   + P LPL + A +ILV G+HAD+LGYQCGGWT  W G +G+ T+GTTIL
Sbjct: 1   LVLLKNGKTSTDAPLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTIL 60

Query: 276 EAVKEAVGDETEVIYEKYPSPDTFVAGDFSFAIAAVGEEPYAETLGDNSELIIPLNGGDV 335
           EAVK AV   T V++ + P  +   +G FS+AI AVGE PY ET GDN  L IP  G   
Sbjct: 61  EAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLST 120

Query: 336 ISLVAERIPTLAILVSGRPLVLEPQLLEKADALVAAWLPGSEGSGIADVVFGDHDFTGRL 395
           +  V   +    +L+SGRP+V++P  L  +DALVAAWLPGSEG G+ D +FGD  FTGRL
Sbjct: 121 VQAVCGGVRCATVLISGRPVVVQPL-LAASDALVAAWLPGSEGQGVTDALFGDFGFTGRL 179

Query: 396 PVTWYRSVQRLPMNVADNTYDPLFPLGFGLTYK 428
           P TW++SV +LPMNV D  YDPLF LG+GLT  
Sbjct: 180 PRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTTN 212
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 388 Back     information, alignment and structure
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Length = 330 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
d1x38a1388 Beta-D-glucan exohydrolase, N-terminal domain {Bar 100.0
d1x38a2214 Beta-D-glucan exohydrolase, C-terminal domain {Bar 100.0
d1tr9a_330 Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 99.97
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: NagZ-like
domain: Beta-D-glucan exohydrolase, N-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=2.4e-49  Score=397.04  Aligned_cols=215  Identities=56%  Similarity=0.975  Sum_probs=191.8

Q ss_pred             cceeeccCCCCCCCCCCCcccccCCCceeeeecccccCCCCcCCCcccCCCCCHHHHHHhchHHHHHHHHcCCCceeecc
Q 013894            2 TSIVSGLQGRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCTIMASY   81 (434)
Q Consensus         2 ~a~v~g~qg~~~~~~~~g~a~~~G~~gv~a~~KHFpg~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~~i~~g~~~vM~sy   81 (434)
                      ..+|.++||.....+..|.....+++||++|+|||||||++..++|...+.++.++|+++||+||+++|++|+.+|||+|
T Consensus       174 ~~~v~~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~~~~~~~~~~i~~~~l~~~~l~pf~~~i~~g~~~vM~s~  253 (388)
T d1x38a1         174 TELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKNAMDKGVSTVMISY  253 (388)
T ss_dssp             GGHHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCGGGCTTCEECCCHHHHHHHTSHHHHHHHHTTCCEEEECS
T ss_pred             HhhhhhhhchhhhhhcccccccccccCcceeeeeeecCCccccCccccccchhHHHHHHHhhhhhHHHHhhccccccccc
Confidence            34677888865433222222222356999999999999999888888888899999999999999999999999999999


Q ss_pred             cCCCCccCCCCHHHHHHHHHhhcCCCeEEEcChhhhhhhcCCCCCChHHHHHHHHHcCCCeecCCCChHHHHHHHHHHHH
Q 013894           82 SSWNGRKLHADHFLLTEVLKNKLGFKGFVISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMVPHRFDQFFEDLTYLVE  161 (434)
Q Consensus        82 ~~~~g~pa~~s~~~l~~iLR~~~gf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~  161 (434)
                      +.+||+|+|.|+++|+++||++|||+|+|||||++|.++...+..+..++.+.++.||+|++|.+.+...+++.|.+||+
T Consensus       254 ~~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~~~~~~~~~~~~~~~a~~ag~d~~~~~~~~~~~~~~l~~av~  333 (388)
T d1x38a1         254 SSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVN  333 (388)
T ss_dssp             SEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGSSSTTTTHHHHHHHHHHHTCCBEECCSCHHHHHHHHHHHHH
T ss_pred             cccCCccccCCHHHHHHHHHhccCCCceeecchhhccccccccCCcHHHHHHHHHhcCCCeecCCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987766666778889999999999999888888899999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCcchhhhhcchhHHHHHHHHHhcc
Q 013894          162 SGKVPMSRIDDAVERILRVKFVAGLFEYPFSDKSLLNIVGCKLHRELAREAVRKS  216 (434)
Q Consensus       162 ~g~~~~~~id~a~~ril~~k~~~gl~~~p~~~~~~~~~~~~~~~~~la~~~a~~s  216 (434)
                      +|.|+++|||+||+|||++|+++||||+|+.++.....+++++|+++++++|+||
T Consensus       334 ~G~i~~~rid~sv~Ril~~k~~lGlfd~p~~~~~~~~~i~~~~h~~~a~~aA~~S  388 (388)
T d1x38a1         334 GGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKS  388 (388)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHHTTTTTCCSCCGGGGGGTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCChhhhhhcCCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999998876667799999999999999987
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure