Citrus Sinensis ID: 013975

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MDKWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVAPLENLRHVKRIQKKFLEGGKTQLSMILCLADENDNRMNSLPQDVQELVNSYQLSPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGIPGFNEDDSQSIFSFMKSAVELAQSGDGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAARTSTTNTNATTVCQ
ccccEEEcccccccccccccccEEEEEEEEccccccHHHHHHHHHccccccccccccccccccccccccEEEEEEEccccccccccccHHHHHHHHHcccccEEEEccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEccccccccccccccccccccccHHccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEcccccccccccccccccccccccccEEEEEcccHHHHHcHHHHHHHHHcccccccccccc
cccEEEEEccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHccccccccEEEEccccccccccccEEEEEEccccccccccccHHHHHHHcccccccEEEEccccccccHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccEEEEEEcccEEcccccHcccccccHcccHHHHcccHHHccccccccccccccHHHcccccccEEEEccccccEEEccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHHHHEEccccccccccccEEEEccccccccccEEEccccHHHHHHHHHHHHHHHccccccccHccc
mdkwqiihipnkpaippnqqptvnvFASMVEPKLANTIISRRlnqvaplenlRHVKRIQKKFLEGGKTQLSMILCLAdendnrmnslpQDVQELVNsyqlspfiTKVCKNAALSKEEWEEQCklwptsyhpptynidgipgfneddsQSIFSFMKSAVELAqsgdgsivnAAVIVDPSIKQEIASACdqicccsisteknslescseqpevlssdlfsngesnhtslppndfpsetrksysgvsclnpwqwaqenshttscywhPLRHAAIAAIQSSAArdrllfpgmghegdkpngvhtiqptsigtpakrqktdlanvenseeldpsaggfhpesarpylctgydiylvWEPCVMCAMALVHQRIRRIFyafpnpnegalgsvhrlqgekslNHHYAVFRVLLPKEILNKNEVVAARTsttntnattvcq
MDKWQIIhipnkpaippnqqPTVNVFASMVEPKLANTIISRrlnqvaplenlrhVKRIQKKfleggktqLSMILCLADENDNRMNSLPQDVQELVNSYQLSPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGIPGFNEDDSQSIFSFMKSAVELAQSGDGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHtiqptsigtpakrQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVaartsttntnattvcq
MDKWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVAPLENLRHVKRIQKKFLEGGKTQLSMILCLADENDNRMNSLPQDVQELVNSYQLSPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGIPGFNEDDSQSIFSFMKSAVELAQSGDGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHaaiaaiqssaaRDRLLFPGMGHEGDKPNGVHTIQPTSIGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEvvaartsttntnattvCQ
*****IIHI************TVNVFASMVEPKLANTIISRRLNQVAPLENLRHVKRIQKKFLEGGKTQLSMILCLADE**********DVQELVNSYQLSPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGIPGFNEDDSQSIFSFMKSAVELAQSGDGSIVNAAVIVDPSIKQEIASACDQICCCSIS*********************************************GVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLF*****************************************************RPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVA***************
**KWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVAPLENLRHVKR**************MILCLAD*************QELVNSYQLSPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGIPGFNEDDSQSIFSFMKSAVELAQSGDGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGES**************************WQWA*ENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKN*******************
MDKWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVAPLENLRHVKRIQKKFLEGGKTQLSMILCLADENDNRMNSLPQDVQELVNSYQLSPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGIPGFNEDDSQSIFSFMKSAVELAQSGDGSIVNAAVIVDPSIKQEIASACDQICCCSISTE*************LSSDLFSNGESNHTSLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAART************
*DKWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVAPLENLRHVKRIQKKFLEGGKTQLSMILCLADENDNRMNSLPQDVQELVNSYQLSPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGIPGFNEDDSQSIFSFMKSAVELAQSGDGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGH*****NGVHTIQPTSIGTPAKR*********NSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAAR*************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDKWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVAPLENLRHVKRIQKKFLEGGKTQLSMILCLADENDNRMNSLPQDVQELVNSYQLSPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGIPGFNEDDSQSIFSFMKSAVELAQSGDGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAARTSTTNTNATTVCQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query432 2.2.26 [Sep-21-2011]
Q6PAT0349 Probable inactive tRNA-sp yes no 0.159 0.197 0.571 4e-19
Q561R2349 Probable inactive tRNA-sp yes no 0.159 0.197 0.571 1e-18
Q96EY9351 Probable inactive tRNA-sp yes no 0.303 0.373 0.364 2e-18
Q8JFW4336 Probable inactive tRNA-sp yes no 0.159 0.205 0.514 3e-16
Q9URQ3322 tRNA-specific adenosine d yes no 0.155 0.208 0.408 2e-09
Q9P7N4315 tRNA-specific adenosine d yes no 0.115 0.158 0.393 2e-08
Q1RGK7145 Uncharacterized deaminase yes no 0.122 0.365 0.415 3e-06
Q4UJW9144 Uncharacterized deaminase yes no 0.090 0.270 0.487 2e-05
Q68Y02148 Uncharacterized deaminase yes no 0.090 0.263 0.487 2e-05
Q92G39153 Uncharacterized deaminase yes no 0.090 0.254 0.461 3e-05
>sp|Q6PAT0|ADAT3_MOUSE Probable inactive tRNA-specific adenosine deaminase-like protein 3 OS=Mus musculus GN=Adat3 PE=2 SV=1 Back     alignment and function desciption
 Score = 96.3 bits (238), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 336 ESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLN 395
           E + PY+CTGYD+Y+  EPCVMCAMALVH RI+R+FY  P+P+ GALG++ R+     LN
Sbjct: 270 EDSLPYVCTGYDLYVTREPCVMCAMALVHARIQRVFYGAPSPD-GALGTLFRVHARPDLN 328

Query: 396 HHYAVFRVLL 405
           H + VFR +L
Sbjct: 329 HRFQVFRGIL 338
May be involved in deamination of adenosine-34 to inosine in many tRNAs as a regulatory subunit.
Mus musculus (taxid: 10090)
>sp|Q561R2|ADAT3_RAT Probable inactive tRNA-specific adenosine deaminase-like protein 3 OS=Rattus norvegicus GN=Adat3 PE=2 SV=1 Back     alignment and function description
>sp|Q96EY9|ADAT3_HUMAN Probable inactive tRNA-specific adenosine deaminase-like protein 3 OS=Homo sapiens GN=ADAT3 PE=1 SV=1 Back     alignment and function description
>sp|Q8JFW4|ADAT3_DANRE Probable inactive tRNA-specific adenosine deaminase-like protein 3 OS=Danio rerio GN=adat3 PE=2 SV=2 Back     alignment and function description
>sp|Q9URQ3|TAD3_YEAST tRNA-specific adenosine deaminase subunit TAD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAD3 PE=1 SV=1 Back     alignment and function description
>sp|Q9P7N4|TAD3_SCHPO tRNA-specific adenosine deaminase subunit tad3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tad3 PE=3 SV=1 Back     alignment and function description
>sp|Q1RGK7|Y1426_RICBR Uncharacterized deaminase RBE_1426 OS=Rickettsia bellii (strain RML369-C) GN=RBE_1426 PE=3 SV=2 Back     alignment and function description
>sp|Q4UJW9|Y1319_RICFE Uncharacterized deaminase RF_1319 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_1319 PE=3 SV=2 Back     alignment and function description
>sp|Q68Y02|Y819_RICTY Uncharacterized deaminase RT0819 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=RT0819 PE=3 SV=1 Back     alignment and function description
>sp|Q92G39|Y1285_RICCN Uncharacterized deaminase RC1285 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC1285 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
359493535433 PREDICTED: tRNA-specific adenosine deami 0.949 0.946 0.673 1e-165
297734758402 unnamed protein product [Vitis vinifera] 0.907 0.975 0.668 1e-160
255561486423 hydrolase, putative [Ricinus communis] g 0.942 0.962 0.638 1e-153
356547101470 PREDICTED: tRNA-specific adenosine deami 0.884 0.812 0.618 1e-128
357520943424 tRNA-specific adenosine deaminase-like p 0.921 0.938 0.573 1e-127
449448556410 PREDICTED: tRNA-specific adenosine deami 0.925 0.975 0.596 1e-125
449487935410 PREDICTED: LOW QUALITY PROTEIN: tRNA-spe 0.925 0.975 0.594 1e-125
297838959400 hydrolase/ zinc ion binding protein [Ara 0.900 0.972 0.546 1e-124
297843134400 hydrolase/ zinc ion binding protein [Ara 0.898 0.97 0.539 1e-122
79519581400 cytidine/deoxycytidylate deaminase-like 0.900 0.972 0.534 1e-120
>gi|359493535|ref|XP_002266270.2| PREDICTED: tRNA-specific adenosine deaminase-like protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 278/413 (67%), Positives = 333/413 (80%), Gaps = 3/413 (0%)

Query: 3   KWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVAPLENLRHVKRIQKKF 62
           KW+IIHIP KP + P  QPTV+V AS+++PKLANT++ RRLNQ+APLEN RHVKRIQKK 
Sbjct: 5   KWEIIHIPEKPPVSPTHQPTVDVLASVIDPKLANTLV-RRLNQIAPLENFRHVKRIQKKH 63

Query: 63  LEGGKTQLSMILCLADENDNRMNSLPQDVQELVNSYQLSPFITKVCKNAALSKEEWEEQC 122
           ++GGKTQL++ILCLA EN+N ++ +P DV EL+NSYQLS FITKVCK AALSKEEWEEQC
Sbjct: 64  MQGGKTQLAIILCLASENENPLDGIPNDVLELINSYQLSAFITKVCKYAALSKEEWEEQC 123

Query: 123 KLWPTSYHPPTYNIDGIPGFNEDDSQSIFSFMKSAVELAQSGDGSIVNAAVIVDPSIKQE 182
           KLWPTSYHPPTYNI+GI GF+E+DSQS+FSFMKSAV+LA+S DG +VNAAVIVDP +KQ 
Sbjct: 124 KLWPTSYHPPTYNIEGIAGFSEEDSQSVFSFMKSAVKLAKSDDGQVVNAAVIVDPLVKQI 183

Query: 183 IASACDQICCCSISTEKNSLE-SCSEQPEVLSSDLFSNGESNHTSLPPNDFPSETRKSYS 241
           I SACD+IC      +K S+E SC EQP++ +S    NG  +H +L     P E ++ Y+
Sbjct: 184 IVSACDEICSWHTPMDKTSVEASCLEQPDIATSQGVVNGVVSHETLLSKGPPDEPKQLYT 243

Query: 242 GVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTI 301
           GVSCL PW+WA+  SH +S YWHPLRHAA+ AI+ SAARDR LFPG+G  G++ N +   
Sbjct: 244 GVSCLYPWRWAEHQSHASS-YWHPLRHAAVVAIEYSAARDRRLFPGLGQIGNQSNQLDHT 302

Query: 302 QPTSIGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMA 361
              SI + AKRQKT+L  VE+ E+LD    GFH ++ARPYLCTGYDIYLVWEPC MCAMA
Sbjct: 303 LSASISSQAKRQKTNLKKVEDVEKLDAHCNGFHSDAARPYLCTGYDIYLVWEPCAMCAMA 362

Query: 362 LVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNE 414
           LVHQRIRRIFYAFPNPN GALGSVHRLQGEKSLNHHYAVFRV LP+EIL+  +
Sbjct: 363 LVHQRIRRIFYAFPNPNAGALGSVHRLQGEKSLNHHYAVFRVSLPEEILDGGD 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734758|emb|CBI16992.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255561486|ref|XP_002521753.1| hydrolase, putative [Ricinus communis] gi|223538966|gb|EEF40563.1| hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356547101|ref|XP_003541956.1| PREDICTED: tRNA-specific adenosine deaminase-like protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357520943|ref|XP_003630760.1| tRNA-specific adenosine deaminase-like protein [Medicago truncatula] gi|355524782|gb|AET05236.1| tRNA-specific adenosine deaminase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449448556|ref|XP_004142032.1| PREDICTED: tRNA-specific adenosine deaminase-like protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449487935|ref|XP_004157874.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-specific adenosine deaminase-like protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297838959|ref|XP_002887361.1| hydrolase/ zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297333202|gb|EFH63620.1| hydrolase/ zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297843134|ref|XP_002889448.1| hydrolase/ zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297335290|gb|EFH65707.1| hydrolase/ zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79519581|ref|NP_197855.3| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis thaliana] gi|332005964|gb|AED93347.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
MGI|MGI:1924344349 Adat3 "adenosine deaminase, tR 0.159 0.197 0.571 3.8e-29
RGD|1642417349 Adat3 "adenosine deaminase, tR 0.159 0.197 0.571 5.3e-29
ZFIN|ZDB-GENE-030616-531336 adat3 "adenosine deaminase, tR 0.152 0.196 0.537 1.2e-28
UNIPROTKB|Q96EY9351 ADAT3 "Probable inactive tRNA- 0.166 0.205 0.547 2.1e-27
FB|FBgn0034360360 CG10927 [Drosophila melanogast 0.180 0.216 0.493 5.6e-18
WB|WBGene00012927287 Y47D3A.14 [Caenorhabditis eleg 0.143 0.216 0.546 1.3e-15
POMBASE|SPAP27G11.04c315 tad3 "tRNA specific adenosine 0.141 0.193 0.393 1.3e-15
DICTYBASE|DDB_G0278841519 DDB_G0278841 "cytidine deamina 0.155 0.129 0.411 3.1e-15
SGD|S000004308322 TAD3 "Subunit of tRNA-specific 0.155 0.208 0.408 5.5e-13
CGD|CAL0001811326 orf19.5090 [Candida albicans ( 0.159 0.211 0.449 6.9e-08
MGI|MGI:1924344 Adat3 "adenosine deaminase, tRNA-specific 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 227 (85.0 bits), Expect = 3.8e-29, Sum P(2) = 3.8e-29
 Identities = 40/70 (57%), Positives = 53/70 (75%)

Query:   336 ESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLN 395
             E + PY+CTGYD+Y+  EPCVMCAMALVH RI+R+FY  P+P +GALG++ R+     LN
Sbjct:   270 EDSLPYVCTGYDLYVTREPCVMCAMALVHARIQRVFYGAPSP-DGALGTLFRVHARPDLN 328

Query:   396 HHYAVFRVLL 405
             H + VFR +L
Sbjct:   329 HRFQVFRGIL 338
GO:0003674 "molecular_function" evidence=ND
GO:0003824 "catalytic activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0008033 "tRNA processing" evidence=IEA
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
RGD|1642417 Adat3 "adenosine deaminase, tRNA-specific 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-531 adat3 "adenosine deaminase, tRNA-specific 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q96EY9 ADAT3 "Probable inactive tRNA-specific adenosine deaminase-like protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0034360 CG10927 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00012927 Y47D3A.14 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
POMBASE|SPAP27G11.04c tad3 "tRNA specific adenosine deaminase subunit Tad3" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278841 DDB_G0278841 "cytidine deaminase-like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000004308 TAD3 "Subunit of tRNA-specific adenosine-34 deaminase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0001811 orf19.5090 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00031987001
SubName- Full=Chromosome chr18 scaffold_61, whole genome shotgun sequence; (433 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
COG0590152 COG0590, CumB, Cytosine/adenosine deaminases [Nucl 4e-17
cd01285109 cd01285, nucleoside_deaminase, Nucleoside deaminas 7e-15
PRK10860172 PRK10860, PRK10860, tRNA-specific adenosine deamin 5e-08
pfam00383104 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti 4e-05
>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score = 77.7 bits (192), Expect = 4e-17
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 322 NSEELDPSAGGFHPE---------SARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFY 372
             E+ DP+A   H E         +   Y      +Y+  EPC MCA A++  RI R+ Y
Sbjct: 49  REEDNDPTA---HAEILAIRAAAETLGNYRLKDCTLYVTLEPCPMCAGAIIWARIDRVVY 105

Query: 373 AFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKE 408
              +P  GA+GS+  +  +  LNH   V+  +L +E
Sbjct: 106 GASDPKTGAIGSLLDILKDPRLNHRVEVYGGILEEE 141

Length = 152
>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
KOG2771344 consensus Subunit of tRNA-specific adenosine-34 de 100.0
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 99.97
PRK10860172 tRNA-specific adenosine deaminase; Provisional 99.97
cd01285109 nucleoside_deaminase Nucleoside deaminases include 99.9
PRK10786 367 ribD bifunctional diaminohydroxyphosphoribosylamin 99.85
TIGR00326 344 eubact_ribD riboflavin biosynthesis protein RibD. 99.85
PLN02807 380 diaminohydroxyphosphoribosylaminopyrimidine deamin 99.85
KOG1018169 consensus Cytosine deaminase FCY1 and related enzy 99.83
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 99.81
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.79
PHA02588168 cd deoxycytidylate deaminase; Provisional 99.79
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 99.75
TIGR02571151 ComEB ComE operon protein 2. This protein is found 99.74
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.73
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 99.69
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 99.21
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 98.82
PRK14719 360 bifunctional RNAse/5-amino-6-(5-phosphoribosylamin 98.5
KOG3127230 consensus Deoxycytidylate deaminase [Nucleotide tr 98.27
PF14439136 Bd3614-deam: Bd3614-like deaminase 98.12
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 94.89
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-50  Score=398.30  Aligned_cols=292  Identities=32%  Similarity=0.526  Sum_probs=223.6

Q ss_pred             CCceeEEEEeeCchhHHHHH---HHHhhccCCCCCCCccccccccccCCCcceeEEEEeecccCcccCCCchhhHHHHhh
Q 013975           20 QPTVNVFASMVEPKLANTII---SRRLNQVAPLENLRHVKRIQKKFLEGGKTQLSMILCLADENDNRMNSLPQDVQELVN   96 (432)
Q Consensus        20 ~~lv~v~a~~I~~K~~~~li---~r~L~~~~Pl~~L~HLKRvrk~~~~~g~~~L~viLc~~~~~~~~~~~l~~~l~~lv~   96 (432)
                      -+++++|.+.+.|+...+.|   ++++.. .+++.|+||||||.....++...+.++||+.+...     .+..|.++.+
T Consensus        32 ~~ti~~~~~~~~ple~kk~i~~v~~~~~~-~~~~~l~hlkRv~~~~~d~~~~~~e~v~c~~~~~s-----~~~~l~~l~~  105 (344)
T KOG2771|consen   32 CETIPVWSARAAPLEDKKVIGRVIKELSR-ELPESLRHLKRVRPYRKDGSSLILEDVLCLKSPES-----AELILGDLED  105 (344)
T ss_pred             CCcchhheeeecchHHHHHHHHHHHHhcc-CChHHHHHHHHhhhhcccCCcchhhhhhccCccch-----hhHHHHhhhh
Confidence            46778887777655544444   155554 23468999999996554456778889999986533     2334455544


Q ss_pred             hccC------CceeeeccccCCCCHHHHHHhcCcCccccCCCCCCCCCCC--CCChhhHHHHHHHHHHHHHHHHcCCCCc
Q 013975           97 SYQL------SPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGIP--GFNEDDSQSIFSFMKSAVELAQSGDGSI  168 (432)
Q Consensus        97 ~~~l------~~~i~~VP~~~P~treqwe~~sk~WP~~fhp~~~~~~~~~--~f~~~~~~~~~~~m~~A~e~a~~g~g~~  168 (432)
                      .-..      ..+.++||+++|.||+||++|.+|||++||||++......  .|+.++.+.+.++|+.++++|..|.-+.
T Consensus       106 ~~~v~~~~~~~v~~~~Vp~~~p~tr~qfees~~~wpv~~h~n~~~~~l~~G~~fs~~e~~~~~ri~e~~I~~a~~~~~~~  185 (344)
T KOG2771|consen  106 SGAVSPRLVGLVRSVEVPEFAPLTREQFEESKEYWPVSFHPNHEDEQLADGSFFSDEERGEIARIGELLIAMATDGHASR  185 (344)
T ss_pred             ccccchhhcccceeeeccccCCCCHHHHHhhheeeecccCCCchHHHHhccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            4332      2367889999999999999999999999999987543222  3899999999999999999999997778


Q ss_pred             ceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCCCCCCCCcccccccCCcccCCc
Q 013975          169 VNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLPPNDFPSETRKSYSGVSCLNP  248 (432)
Q Consensus       169 ~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  248 (432)
                      +++|+||||....|+|.+.|+.+                                                         
T Consensus       186 ~~~a~I~~p~~~~Via~~~~~~~---------------------------------------------------------  208 (344)
T KOG2771|consen  186 PVSAAIVDPVMDRVIAAGTGEVC---------------------------------------------------------  208 (344)
T ss_pred             CccceecCCccceEEecCCCccc---------------------------------------------------------
Confidence            89999999999999999988643                                                         


Q ss_pred             ccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCC----CCcccccccccccccCcc
Q 013975          249 WQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSI----GTPAKRQKTDLANVENSE  324 (432)
Q Consensus       249 ~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~----~~~~kr~k~~~~~~~~~~  324 (432)
                                   ..+|..|++|++|+.||+|+..-         .|-..  ..++.+    .+|.++|+..      .+
T Consensus       209 -------------~~~P~eh~~mv~v~~v~rrq~~~---------~~~~~--~~~~~~f~~~~~~~~~~~~~------v~  258 (344)
T KOG2771|consen  209 -------------AYNPIEHCVMVLVHFVARRQEEG---------TWDLH--PIPLLIFNAVSSPFYKQTVA------VQ  258 (344)
T ss_pred             -------------ccCcHHHHHHHHHHHHHHHHhcc---------ccccc--cccccccccccchhhhhhch------hc
Confidence                         12699999999999999998731         22111  111111    2233333321      11


Q ss_pred             cCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchhhcccccCCCCcEEEeec
Q 013975          325 ELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVL  404 (432)
Q Consensus       325 ~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l~~~~~lnh~~~V~~gv  404 (432)
                      .+      +.....+||+|+||++|+|+|||.||+|||+|+||+||||+.++..+|++|+.+.+|+++.|||+|+||+|+
T Consensus       259 ~~------D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~LNhry~vfr~~  332 (344)
T KOG2771|consen  259 LL------DVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKSLNHRYEVFRGY  332 (344)
T ss_pred             cc------cccccccceeeecceEEEecChHHHHHHHHHHHhhhheeeccCCCCCCCccceeEeeeccccCcceEEEEee
Confidence            11      122335789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHH
Q 013975          405 LPKEIL  410 (432)
Q Consensus       405 l~eEa~  410 (432)
                      +++++.
T Consensus       333 ~e~d~~  338 (344)
T KOG2771|consen  333 LEEDPI  338 (344)
T ss_pred             cccccc
Confidence            998765

>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF14439 Bd3614-deam: Bd3614-like deaminase Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
2a8n_A144 Biochemical And Structural Studies Of A-To-I Editin 3e-06
2b3j_A159 Crystal Structure Of Staphylococcus Aureus Trna Ade 5e-06
1z3a_A168 Crystal Structure Of Trna Adenosine Deaminase Tada 7e-06
3ocq_A183 Crystal Structure Of Trna-Specific Adenosine Deamin 9e-06
1wwr_A171 Crystal Structure Of Trna Adenosine Deaminase Tada 3e-05
2nx8_A179 The Crystal Structure Of The Trna-Specific Adenosin 2e-04
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By Trna:a34 Deaminases At The Wobble Position Of Transfer Rna Length = 144 Back     alignment and structure 
Iteration: 1

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 345 GYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVL 404
           G D+Y+  EPC MCA A+   RIRR++Y   +P  GA+ S  R   + + +H   V+  L
Sbjct: 73  GADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGL 132
Query: 405 LPKE 408
              E
Sbjct: 133 AESE 136
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna Length = 159 Back     alignment and structure
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli Length = 168 Back     alignment and structure
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase From Salmonella Enterica Length = 183 Back     alignment and structure
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Aquifex Aeolicus Length = 171 Back     alignment and structure
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes Length = 179 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 8e-15
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 1e-14
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 1e-14
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 2e-14
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 4e-14
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 8e-13
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 5e-09
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 1e-08
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 Back     alignment and structure
 Score = 70.2 bits (173), Expect = 8e-15
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 344 TGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRV 403
            G D+Y+  EPC MCA A+   RIRR++Y   +P  GA+ S  R   + + +H   V+  
Sbjct: 72  PGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSG 131

Query: 404 LLPKE 408
           L   E
Sbjct: 132 LAESE 136
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 99.97
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 99.97
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 99.97
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 99.96
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 99.96
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 99.96
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 99.95
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 99.95
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 99.92
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 99.9
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 99.88
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 99.87
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 99.82
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 99.81
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 99.78
3g8q_A 278 Predicted RNA-binding protein, contains thump doma 99.55
2nyt_A190 Probable C->U-editing enzyme apobec-2; cytidine de 99.41
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 98.37
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 97.82
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 97.55
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 95.65
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 93.75
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 91.44
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 90.42
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 80.09
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
Probab=99.97  E-value=2.9e-31  Score=245.67  Aligned_cols=149  Identities=23%  Similarity=0.314  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCC
Q 013975          148 QSIFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHT  225 (432)
Q Consensus       148 ~~~~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  225 (432)
                      .....||+.|+++|+.+  .|..++|||||+  .|+||+.|++.+.                                  
T Consensus        14 ~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~--~g~Ii~~G~N~~~----------------------------------   57 (179)
T 2nx8_A           14 EEQTYFMQEALKESEKSLQKAEIPIGCVIVK--DGEIIGRGHNARE----------------------------------   57 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH----------------------------------
T ss_pred             HHHHHHHHHHHHHHHhccccCCCCEEEEEEE--CCEEEEEEECCCC----------------------------------
Confidence            34567999999999864  567788999997  7999999997653                                  


Q ss_pred             CCCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCC
Q 013975          226 SLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTS  305 (432)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~  305 (432)
                                                         ...+|+.||+|.||..++++.                        
T Consensus        58 -----------------------------------~~~d~t~HAE~~AI~~a~~~~------------------------   78 (179)
T 2nx8_A           58 -----------------------------------ESNQAIMHAEMMAINEANAHE------------------------   78 (179)
T ss_dssp             -----------------------------------HHTCTTCCHHHHHHHHHHHHH------------------------
T ss_pred             -----------------------------------CcCCCccCHHHHHHHHHHHHc------------------------
Confidence                                               123689999999999987653                        


Q ss_pred             CCCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccc
Q 013975          306 IGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV  385 (432)
Q Consensus       306 ~~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~  385 (432)
                                                       +.|+++|+|||||+|||+||++||+|+||+|||||..+++.|+.|+.
T Consensus        79 ---------------------------------~~~~l~g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~  125 (179)
T 2nx8_A           79 ---------------------------------GNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSL  125 (179)
T ss_dssp             ---------------------------------TSSCCTTEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTS
T ss_pred             ---------------------------------CCCcccceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccH
Confidence                                             24788999999999999999999999999999999999999999999


Q ss_pred             hhhcccccCCCCcEEEeeccHHHHHHHHHHHHHHHhhCC
Q 013975          386 HRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAARTSTTN  424 (432)
Q Consensus       386 ~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~R~~~~~  424 (432)
                      +.++....+||+++|++|++++||.+|+..|..+..+++
T Consensus       126 ~~~l~~~~~~~~~~V~~gvl~~e~~~l~~~f~~~~r~~~  164 (179)
T 2nx8_A          126 YQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERK  164 (179)
T ss_dssp             CCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence            999998899999999999999999999999887655443
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 432
d1wwra1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 2e-09
d1wkqa_158 c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub 3e-09
d2a8na1130 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de 4e-09
d2g84a1189 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr 7e-05
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Aquifex aeolicus [TaxId: 63363]

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 336 ESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLN 395
                    G ++Y+  EPC+MC+ ALV  RI ++ ++  +   G + SV  +  E +LN
Sbjct: 63  RRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLN 122

Query: 396 HHYAVFRVLL 405
           H        L
Sbjct: 123 HRVKWEYYPL 132
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130 Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 99.96
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 99.96
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 99.96
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 99.96
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 99.96
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 99.94
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 99.93
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 99.92
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 99.89
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 99.7
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=7.4e-30  Score=228.67  Aligned_cols=141  Identities=25%  Similarity=0.379  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCCC
Q 013975          151 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLP  228 (432)
Q Consensus       151 ~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  228 (432)
                      ..||+.|+++|+.+  .|..++||||||  .++|||.|.+++.                                     
T Consensus         8 e~~M~~Ai~~A~~a~~~~~~pvGaViv~--~g~Iia~g~n~~~-------------------------------------   48 (156)
T d1z3aa1           8 EYWMRHALTLAKRAWDEREVPVGAVLVH--NNRVIGEGWNRPI-------------------------------------   48 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH-------------------------------------
T ss_pred             HHHHHHHHHHHHHhccCCCCCEEEEEEE--CCeEEEEeecccc-------------------------------------
Confidence            46999999999864  677778999997  6899999987643                                     


Q ss_pred             CCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 013975          229 PNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGT  308 (432)
Q Consensus       229 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~  308 (432)
                                                      ...||+.||+|.||.....+..                          
T Consensus        49 --------------------------------~~~~~~~HAE~~ai~~a~~~~~--------------------------   70 (156)
T d1z3aa1          49 --------------------------------GRHDPTAHAEIMALRQGGLVMQ--------------------------   70 (156)
T ss_dssp             --------------------------------HHTCTTCCHHHHHHHHHHHHHT--------------------------
T ss_pred             --------------------------------ccCcchhhHHHHhHHHHHhhcc--------------------------
Confidence                                            2358999999999998766542                          


Q ss_pred             cccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchhh
Q 013975          309 PAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL  388 (432)
Q Consensus       309 ~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l  388 (432)
                                                     ++.+.+++||+|+|||+||++||+|+||+|||||..+++.|+.|+.+..
T Consensus        71 -------------------------------~~~l~~~~lytT~ePC~mC~~aii~~gI~rVvyg~~d~~~~~~g~~~~~  119 (156)
T d1z3aa1          71 -------------------------------NYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV  119 (156)
T ss_dssp             -------------------------------SSCCTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBC
T ss_pred             -------------------------------cccccCceeeeccccccchhhHHHHhCCceEEEEeecCCCcccCcHHHH
Confidence                                           3567899999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcEEEeeccHHHHHHHHHHHHHH
Q 013975          389 QGEKSLNHHYAVFRVLLPKEILNKNEVVAAR  419 (432)
Q Consensus       389 ~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~R  419 (432)
                      +...+++|+++|++|++++||..|+..|...
T Consensus       120 l~~~~~~~~ieV~~gvl~ee~~~ll~~Ff~~  150 (156)
T d1z3aa1         120 LHHPGMNHRVEITEGILADECAALLSDFFRM  150 (156)
T ss_dssp             TTCTTCSSCCEEECCTTHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCcEEEeCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999998877653
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure