Citrus Sinensis ID: 013982

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MSDLEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEVNMSFSAPAFNYSFSF
ccccccccccccHHHHHHHHHHccEEEEEEEEcccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccEEEccccEEEEccccccccccccEEEEcccccccEEEEccccEEEEcccccHHHHHHHHccccccccccccccccccccHHccccccccEEEEccccccEEEEEEEEccccEEEEcccccccHHHHccccccccEEEEEEEEEEEEcccccEEEEEEcccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccccHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHcccccccccccccccccc
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccEEEEccccccccccccEEEEcccccEEEEcccccEEEEcccccHHHHHHHHHHcccccccccccccEEEccEEcccccccccccccccHHHEEEEEEEEcccEEEEEccccccccHHHccccccccHEEEEEEEEEEEEcccEEEEEEEEcccHHHHHHHHHHHHHcHHccccccccccccEEEEEEEccccEEEEEEEcccccccccccccEcccccccccHHHHHHHHHHcccccEEEEccHHHHHHccccHEEEEHccccccccHHHHHHHHccccccHHHHHHcccccHHHHcccccEEEEEEccHHHHHHHHHHHHHHccccEEEEcccEEccccc
msdleaplrpkrkKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKernpskdglvctarkpwiavgmrnvdykraRHFEVDLSAFRNILDidkdrmiakveplvnmgqisratcpmNLSLAVVAelddltvgglingygiegsshiygLFSDTVVAYEIVLADGqvvratkdneykdlfyaipwsqgtlgLLVSAEIKLipikeymkltyKPVASNLREIAQAYAdsfaprdgdqdnqakvpdfveGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALkrgefteyiptreyyhrhtrslywegklilpfgdqfWFRFlfgwmmppkvsLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEVnmsfsapafnysfsf
msdleaplrpkrkkgiADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKkrqkehdenvkkvvkrlkernpskdglvctarkpwiavgmrnvdYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSfaprdgdqdNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEVNMsfsapafnysfsf
MSDLEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEVNMSFSAPAFNYSFSF
**************GIADFLVQFRWILVVFVVLPISVTIYFLIYLGDV*********************************GLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYAD**************VPDFVEGMIYTSTEAVFMTGRYASKE*AKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEVNMSFSAPAF******
************KKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKR****DENVKKVVKRLKERNPSKDGLVCTARKPWIA*GMRNV*YKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEVNMSFSAPAFNYSF**
*********PKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSD**************VKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEVNMSFSAPAFNYSFSF
*****APLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEVNMSFSAPAFNYSFSF
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSDLEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEVNMSFSAPAFNYSFSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query432 2.2.26 [Sep-21-2011]
P93472 567 Delta(24)-sterol reductas N/A no 0.965 0.735 0.846 0.0
Q39085 561 Delta(24)-sterol reductas yes no 0.974 0.750 0.788 0.0
Q15392516 Delta(24)-sterol reductas yes no 0.912 0.763 0.431 6e-89
Q60HC5516 Delta(24)-sterol reductas N/A no 0.912 0.763 0.431 7e-89
Q5BQE6516 Delta(24)-sterol reductas yes no 0.912 0.763 0.426 3e-88
Q8VCH6516 Delta(24)-sterol reductas yes no 0.912 0.763 0.426 6e-88
O17397525 Diminuto-like protein OS= yes no 0.935 0.769 0.365 1e-76
P72056461 Probable decaprenylphosph no no 0.349 0.327 0.267 8e-10
P58710440 L-gulonolactone oxidase O no no 0.319 0.313 0.237 3e-07
P94535470 Glycolate oxidase subunit yes no 0.314 0.289 0.302 1e-06
>sp|P93472|DIM_PEA Delta(24)-sterol reductase OS=Pisum sativum GN=DIM PE=1 SV=1 Back     alignment and function desciption
 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/417 (84%), Positives = 384/417 (92%)

Query: 1   MSDLEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQK 60
           MSDLEAPLRPKRKK   D+ V+FRWILV+FVVLPIS T+YFL YLGDV+S+ KS+K RQK
Sbjct: 1   MSDLEAPLRPKRKKIWVDYFVKFRWILVIFVVLPISFTLYFLTYLGDVRSEWKSFKTRQK 60

Query: 61  EHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDI 120
           EHDENV+KVV RLK+RNPSKDGLVCTARKPW+AVGMRNVDYKRARHFEVDLS FRNILDI
Sbjct: 61  EHDENVQKVVNRLKKRNPSKDGLVCTARKPWVAVGMRNVDYKRARHFEVDLSPFRNILDI 120

Query: 121 DKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFS 180
           DK+RMIA+VEPLVNMGQI+R T PMNL+LAVVAELDDLTVGGLINGYGIEGSSH YGLFS
Sbjct: 121 DKERMIARVEPLVNMGQITRVTVPMNLALAVVAELDDLTVGGLINGYGIEGSSHKYGLFS 180

Query: 181 DTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYK 240
           DTVVA+EI+LADG +V+ATKDNEY DLFYAIPWSQGTLGLLV+AE+KLIPIKEYMKLTYK
Sbjct: 181 DTVVAFEIILADGSLVKATKDNEYSDLFYAIPWSQGTLGLLVAAEVKLIPIKEYMKLTYK 240

Query: 241 PVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKK 300
           PV  NL++IAQAY+DSFAPRDGDQDN  KVPDFVE MIY+ T AV MTGRYASKEEAKKK
Sbjct: 241 PVVGNLKDIAQAYSDSFAPRDGDQDNDEKVPDFVETMIYSPTRAVCMTGRYASKEEAKKK 300

Query: 301 GNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFW 360
           GN IN+VGWW+K WFYQHA TALK+G F EYIPTREYYHRHTR LYWEGKLILPFGDQF 
Sbjct: 301 GNKINNVGWWYKTWFYQHAETALKKGLFVEYIPTREYYHRHTRCLYWEGKLILPFGDQFS 360

Query: 361 FRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEV 417
           FRFLFGW+MPPKVSLLKATQGEAIRNYYH+ HVIQDMLVPLYKVGDALEW  RE+E+
Sbjct: 361 FRFLFGWLMPPKVSLLKATQGEAIRNYYHEMHVIQDMLVPLYKVGDALEWSDREMEI 417
Plays a critical role in the general process of plant cell elongation.
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 7EC: 2
>sp|Q39085|DIM_ARATH Delta(24)-sterol reductase OS=Arabidopsis thaliana GN=DIM PE=1 SV=2 Back     alignment and function description
>sp|Q15392|DHC24_HUMAN Delta(24)-sterol reductase OS=Homo sapiens GN=DHCR24 PE=1 SV=2 Back     alignment and function description
>sp|Q60HC5|DHC24_MACFA Delta(24)-sterol reductase OS=Macaca fascicularis GN=DHCR24 PE=2 SV=2 Back     alignment and function description
>sp|Q5BQE6|DHC24_RAT Delta(24)-sterol reductase OS=Rattus norvegicus GN=Dhcr24 PE=2 SV=2 Back     alignment and function description
>sp|Q8VCH6|DHC24_MOUSE Delta(24)-sterol reductase OS=Mus musculus GN=Dhcr24 PE=2 SV=1 Back     alignment and function description
>sp|O17397|DIML_CAEEL Diminuto-like protein OS=Caenorhabditis elegans GN=F52H2.6 PE=3 SV=1 Back     alignment and function description
>sp|P72056|DPRE1_MYCTU Probable decaprenylphosphoryl-beta-D-ribose oxidase OS=Mycobacterium tuberculosis GN=dprE1 PE=1 SV=1 Back     alignment and function description
>sp|P58710|GGLO_MOUSE L-gulonolactone oxidase OS=Mus musculus GN=Gulo PE=1 SV=3 Back     alignment and function description
>sp|P94535|GLCD_BACSU Glycolate oxidase subunit GlcD OS=Bacillus subtilis (strain 168) GN=glcD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
255549501 567 Cell elongation protein diminuto, putati 0.965 0.735 0.899 0.0
255559165 567 Cell elongation protein diminuto, putati 0.965 0.735 0.899 0.0
224098551 563 predicted protein [Populus trichocarpa] 0.965 0.740 0.899 0.0
224109026 563 predicted protein [Populus trichocarpa] 0.965 0.740 0.887 0.0
356544574 567 PREDICTED: delta(24)-sterol reductase-li 0.981 0.747 0.856 0.0
356538595 567 PREDICTED: delta(24)-sterol reductase-li 0.981 0.747 0.851 0.0
21326148 563 ovule/fiber cell elongation protein Ghfe 0.981 0.753 0.846 0.0
350537457 568 DWARF1/DIMINUTO [Solanum lycopersicum] g 0.981 0.746 0.854 0.0
147861641 563 hypothetical protein VITISV_016141 [Viti 0.981 0.753 0.846 0.0
359473657 563 PREDICTED: delta(24)-sterol reductase-li 0.981 0.753 0.846 0.0
>gi|255549501|ref|XP_002515803.1| Cell elongation protein diminuto, putative [Ricinus communis] gi|223545072|gb|EEF46584.1| Cell elongation protein diminuto, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/417 (89%), Positives = 393/417 (94%)

Query: 1   MSDLEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQK 60
           MSDLEAPLRPKRKK + D+ VQFRWILV+FVVLPIS TIYFL YLGDVKS MKSYK+RQK
Sbjct: 1   MSDLEAPLRPKRKKVLVDYFVQFRWILVIFVVLPISFTIYFLTYLGDVKSSMKSYKQRQK 60

Query: 61  EHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDI 120
           EHDENVKKVVKRLK+RNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFR+ILDI
Sbjct: 61  EHDENVKKVVKRLKQRNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRHILDI 120

Query: 121 DKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFS 180
           DKDRMIAKVEPLVNMGQI+RAT PMNL+LAVVAELDDLTVGGLINGYGIEGSSHIYGLFS
Sbjct: 121 DKDRMIAKVEPLVNMGQITRATVPMNLALAVVAELDDLTVGGLINGYGIEGSSHIYGLFS 180

Query: 181 DTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYK 240
           DTVVAYEIVLADG+VVRATKDNEY DLFY IPWSQGTLGLLVSAEIKLIPIKEYMKLTYK
Sbjct: 181 DTVVAYEIVLADGRVVRATKDNEYSDLFYGIPWSQGTLGLLVSAEIKLIPIKEYMKLTYK 240

Query: 241 PVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKK 300
           P   NL+++AQAY DSFAP+D DQDN  KVPDFVEGMIY+STE V MTGRYASKEEAKKK
Sbjct: 241 PAVGNLKDLAQAYVDSFAPKDLDQDNPDKVPDFVEGMIYSSTEGVMMTGRYASKEEAKKK 300

Query: 301 GNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFW 360
           GNVINSVGWWFKPWFYQHA TAL +GEF EYIPTREYYHRHTR LYWEGKLILPFGDQ W
Sbjct: 301 GNVINSVGWWFKPWFYQHAQTALNKGEFVEYIPTREYYHRHTRCLYWEGKLILPFGDQLW 360

Query: 361 FRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEV 417
           FRFLFGW+MPPKVSLLKATQGEAIRNYYH+NHVIQDMLVPLYKVGDALEW HRE+EV
Sbjct: 361 FRFLFGWLMPPKVSLLKATQGEAIRNYYHENHVIQDMLVPLYKVGDALEWVHREMEV 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255559165|ref|XP_002520604.1| Cell elongation protein diminuto, putative [Ricinus communis] gi|223540203|gb|EEF41777.1| Cell elongation protein diminuto, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224098551|ref|XP_002311215.1| predicted protein [Populus trichocarpa] gi|224098858|ref|XP_002311294.1| predicted protein [Populus trichocarpa] gi|222851035|gb|EEE88582.1| predicted protein [Populus trichocarpa] gi|222851114|gb|EEE88661.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224109026|ref|XP_002315056.1| predicted protein [Populus trichocarpa] gi|222864096|gb|EEF01227.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356544574|ref|XP_003540724.1| PREDICTED: delta(24)-sterol reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|356538595|ref|XP_003537788.1| PREDICTED: delta(24)-sterol reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|21326148|gb|AAM47602.1|AF513859_1 ovule/fiber cell elongation protein Ghfe1 [Gossypium hirsutum] gi|226358404|gb|ACO51065.1| fiber cell elongation protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|350537457|ref|NP_001234550.1| DWARF1/DIMINUTO [Solanum lycopersicum] gi|50952901|gb|AAT90376.1| DWARF1/DIMINUTO [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|147861641|emb|CAN79299.1| hypothetical protein VITISV_016141 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473657|ref|XP_002271846.2| PREDICTED: delta(24)-sterol reductase-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2092276 561 DWF1 "DWARF 1" [Arabidopsis th 0.958 0.737 0.799 1.9e-186
UNIPROTKB|Q5ZIF2516 DHCR24 "Uncharacterized protei 0.784 0.656 0.466 6.4e-83
ZFIN|ZDB-GENE-041212-73516 dhcr24 "24-dehydrocholesterol 0.784 0.656 0.461 1.7e-82
UNIPROTKB|I3LM80516 DHCR24 "Uncharacterized protei 0.789 0.660 0.458 5.2e-81
UNIPROTKB|A6QR14516 DHCR24 "Uncharacterized protei 0.784 0.656 0.463 8.5e-81
UNIPROTKB|F1PXA2516 DHCR24 "Uncharacterized protei 0.784 0.656 0.460 1.8e-80
UNIPROTKB|Q15392516 DHCR24 "Delta(24)-sterol reduc 0.784 0.656 0.460 6e-80
UNIPROTKB|Q60HC5516 DHCR24 "Delta(24)-sterol reduc 0.784 0.656 0.460 7.6e-80
MGI|MGI:1922004516 Dhcr24 "24-dehydrocholesterol 0.784 0.656 0.455 1.6e-79
RGD|1306529516 Dhcr24 "24-dehydrocholesterol 0.784 0.656 0.455 2.6e-79
TAIR|locus:2092276 DWF1 "DWARF 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1808 (641.5 bits), Expect = 1.9e-186, P = 1.9e-186
 Identities = 334/418 (79%), Positives = 374/418 (89%)

Query:     1 MSDLEAPL-RPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQ 59
             MSDL+ PL RPKRKK   D+ V+FRWI+V+F+VLP S T YFLIYLGD+ S+ KS++KRQ
Sbjct:     1 MSDLQTPLVRPKRKKTWVDYFVKFRWIIVIFIVLPFSATFYFLIYLGDMWSESKSFEKRQ 60

Query:    60 KEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILD 119
             KEHDENVKKV+KRLK R+ SKDGLVCTARKPWIAVGMRNVDYKRARHFEVDL  FRNIL+
Sbjct:    61 KEHDENVKKVIKRLKGRDASKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLGEFRNILE 120

Query:   120 IDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLF 179
             I+K++M A+VEPLVNMGQISRAT PMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLF
Sbjct:   121 INKEKMTARVEPLVNMGQISRATVPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLF 180

Query:   180 SDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTY 239
             +DTV AYEIVLA G++VRAT+DNEY DL+YAIPWSQGTLGLLV+AEI+LI +KEYM+LTY
Sbjct:   181 ADTVEAYEIVLAGGELVRATRDNEYSDLYYAIPWSQGTLGLLVAAEIRLIKVKEYMRLTY 240

Query:   240 KPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKK 299
              PV  +L+ +AQ Y DSFAP+DGD+   +K+PDFVEGM+Y  TE V M G YASKEEAKK
Sbjct:   241 IPVKGDLQALAQGYIDSFAPKDGDK---SKIPDFVEGMVYNPTEGVMMVGTYASKEEAKK 297

Query:   300 KGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQF 359
             KGN IN+VGWWFKPWFYQHA TALK+G+F EYIPTREYYHRHTR LYWEGKLILPFGDQF
Sbjct:   298 KGNKINNVGWWFKPWFYQHAQTALKKGQFVEYIPTREYYHRHTRCLYWEGKLILPFGDQF 357

Query:   360 WFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEV 417
             WFR+L GW+MPPKVSLLKATQGEAIRNYYH  HVIQDMLVPLYKVGDALEW HRE+EV
Sbjct:   358 WFRYLLGWLMPPKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDALEWVHREMEV 415
GO:0003824 "catalytic activity" evidence=IEA;IMP
GO:0005634 "nucleus" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005516 "calmodulin binding" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009808 "lignin metabolic process" evidence=IMP
GO:0009834 "secondary cell wall biogenesis" evidence=IMP
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0000272 "polysaccharide catabolic process" evidence=RCA
GO:0005982 "starch metabolic process" evidence=RCA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0009653 "anatomical structure morphogenesis" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=IMP;RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048364 "root development" evidence=RCA
GO:0048653 "anther development" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0048869 "cellular developmental process" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0009416 "response to light stimulus" evidence=IMP
GO:0009826 "unidimensional cell growth" evidence=IMP
GO:0006694 "steroid biosynthetic process" evidence=IMP
GO:0016021 "integral to membrane" evidence=IDA
UNIPROTKB|Q5ZIF2 DHCR24 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041212-73 dhcr24 "24-dehydrocholesterol reductase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LM80 DHCR24 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A6QR14 DHCR24 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PXA2 DHCR24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q15392 DHCR24 "Delta(24)-sterol reductase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q60HC5 DHCR24 "Delta(24)-sterol reductase" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
MGI|MGI:1922004 Dhcr24 "24-dehydrocholesterol reductase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306529 Dhcr24 "24-dehydrocholesterol reductase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P93472DIM_PEA1, ., 3, ., 1, ., 7, 20.84650.96520.7354N/Ano
Q39085DIM_ARATH1, ., 3, ., 1, ., 7, 20.78820.97450.7504yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VIII000736
hypothetical protein (563 aa)
(Populus trichocarpa)
Predicted Functional Partners:
CYP51G5
cytochrome P450 probable obtusifoliol 14-alpha-demethylase (489 aa)
  •  •  0.914
estExt_fgenesh4_pm.C_LG_X0950
SubName- Full=Putative uncharacterized protein; (434 aa)
     •• 0.904
fgenesh4_pg.C_LG_VIII000037
hypothetical protein (437 aa)
     •• 0.904
estExt_fgenesh4_pg.C_280278
hypothetical protein (367 aa)
     •• 0.903
eugene3.00031298
hypothetical protein (221 aa)
     •  0.902
gw1.XVI.1394.1
hypothetical protein (823 aa)
     •  0.899
gw1.IX.3368.1
hypothetical protein (335 aa)
     •  0.899
gw1.1425.5.1
annotation not avaliable (207 aa)
     •  0.899
grail3.0123009201
hypothetical protein (278 aa)
     •  0.899
fgenesh4_pm.C_LG_IV000367
hypothetical protein (510 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 4e-18
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 3e-17
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 3e-11
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 6e-11
PRK11230499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 0.001
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 0.002
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score = 80.3 bits (199), Expect = 4e-18
 Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 109 VDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVV-AELDDLTVGGLINGY 167
           +DLS    IL+ID +   A VE  V +G + RA     L L +        TVGG I   
Sbjct: 48  LDLSRLNGILEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATN 107

Query: 168 GIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT 199
           G    S  YGL  D V++ E+VLADG+VVR +
Sbjct: 108 GGGYGSERYGLTRDNVLSLEVVLADGEVVRLS 139

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
KOG1262 543 consensus FAD-binding protein DIMINUTO [General fu 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 100.0
TIGR01676 541 GLDHase galactonolactone dehydrogenase. This model 100.0
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 99.97
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.97
TIGR01677 557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.97
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.97
PLN02465 573 L-galactono-1,4-lactone dehydrogenase 99.96
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.96
KOG1231505 consensus Proteins containing the FAD binding doma 99.9
KOG4730 518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.89
KOG1232511 consensus Proteins containing the FAD binding doma 99.88
PRK11183564 D-lactate dehydrogenase; Provisional 99.86
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.86
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.82
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.8
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.74
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.74
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.73
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.72
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.71
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.63
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.62
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.58
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.57
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.54
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.48
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.33
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.02
PRK09799258 putative oxidoreductase; Provisional 94.41
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 92.96
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 91.46
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 91.15
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 88.48
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 88.4
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 85.88
PLN02906 1319 xanthine dehydrogenase 85.1
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 83.49
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 80.68
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-72  Score=536.82  Aligned_cols=417  Identities=50%  Similarity=0.870  Sum_probs=375.5

Q ss_pred             CCCCCCCccchhhHHHHHhhccceEEEEEEccCCccchhhhhccccccccccccCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 013982            3 DLEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNP-SKD   81 (432)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~w~~~~~~~~~~p~~~~~v~~iv~~~~~~~~-~~~   81 (432)
                      -.+-|.+++||.   ..+++|||+|+++++||.|+.|+..++.|++|...  ...+.-.|.+.|+.|++.+++++. .+.
T Consensus         5 ~~~~~~k~~~Wv---~~~~~fRwv~Vv~f~LP~S~lF~~~i~~r~~~~~~--~ssa~~~H~qrVkkIqkqlkew~d~s~k   79 (543)
T KOG1262|consen    5 LGVVKAKAIRWV---EYFVHFRWVFVVLFLLPLSFLFDLFIYFRIWLVRK--LSSAPREHQQRVKKIQKQLKEWLDDSEK   79 (543)
T ss_pred             hhhhhhhhhhHH---HHHhhcceEEEehhhhhHHHHHHHHHHHHHHHHHH--hccCchHHHHHHHHHHHHHHhhcccccc
Confidence            345677888883   38899999999999999999999999999955432  233333599999999999999765 567


Q ss_pred             ceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHHHHccCCceeeeecCCCccccc
Q 013982           82 GLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVG  161 (432)
Q Consensus        82 ~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~~l~~~Gl~~~~~p~~~~~tvG  161 (432)
                      ...|++|.+|+++|.+...+... .--|++..|.+|+++|.++.+|+|||+++++++.++|.+.|+++|+.|.....|||
T Consensus        80 ~~lctaRp~Wltvs~r~~dykk~-h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvG  158 (543)
T KOG1262|consen   80 KPLCTARPGWLTVSTRFFDYKKC-HHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVG  158 (543)
T ss_pred             CcccccCCCeEEEEEecchhhhh-cccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceec
Confidence            79999999999999888776544 34566777788999999999999999999999999999999999999999999999


Q ss_pred             ccccCccCCCCCcccCccccceeEEEEEecCCcEEEEcCCCCCcchhhhcccccCCceEEEEEEEEeEEcCceEEEEEec
Q 013982          162 GLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKP  241 (432)
Q Consensus       162 G~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~  241 (432)
                      |.|+|.|+.++|++||++.|.+.+.|||++||+++++.++++++|||+|+..|+||+|+.+.+|+|+.|..+++.++|.+
T Consensus       159 GLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip  238 (543)
T KOG1262|consen  159 GLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIP  238 (543)
T ss_pred             ceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEe
Confidence            99999999999999999999999999999999999999988999999999999999999999999999999999999998


Q ss_pred             cCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCceEEEEecCCceEEEEeeecChHHhhhhcccccccccccccchhhhhhh
Q 013982          242 VASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAAT  321 (432)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  321 (432)
                      . ..+++.++.+.+...    +.+.....++|+++++|++.++++|.|.+++..+..+. +++|.++|+++||||.|++.
T Consensus       239 ~-~~l~e~c~k~~e~~~----dsdkntk~~dfvE~liyn~~egviMvG~fad~~dak~~-~kvN~vgwwyKpWFykHvet  312 (543)
T KOG1262|consen  239 V-HGLDEYCKKITELSG----DSDKNTKNADFVEGLIYNKNEGVIMVGNFADKVDAKSN-AKVNDVGWWYKPWFYKHVET  312 (543)
T ss_pred             c-ccHHHHHHHHHhhcc----cccccccccchhheeeecCCccEEEEEeccCccccccc-cccccchhhhhhHHHHHHHH
Confidence            5 469999999988642    22222235799999999999999999999986665443 68999999999999999999


Q ss_pred             hhhcCccccccccccccccccccccccccccccCCchhHHHHhhcccCCchhhhhhhhcccchhcccCCcceEEEeeccc
Q 013982          322 ALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPL  401 (432)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~r~~~~~ai~~~~~~~~v~eDv~vP~  401 (432)
                      .+..+...+|+|+++||+||.|+.||+.+.++|||++++||++.+|++|+++.+++++++.+++.++.+.+|+||+.||+
T Consensus       313 ~lkkge~~EYIPlr~YyhRHtrsifWe~~~iiPFGn~~~FRyllgWl~PPKia~LKaTt~ealRkly~~~hV~QDmlvPl  392 (543)
T KOG1262|consen  313 FLKKGEGEEYIPLRSYYHRHTRSIFWELEDIIPFGNNPVFRYLLGWLCPPKIAFLKATTGEALRKLYFAKHVFQDMLVPL  392 (543)
T ss_pred             HHhcCCCceeeeHHHHHHhccceeEEeeeeeeecCCcHHHHHHHHhcCCChHHHhhcccHHHHHHHHHHHHHHHHhhccH
Confidence            99888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHhcCCcceeeccccCCCCC
Q 013982          402 YKVGDALEWQHREVEVNMSFSAPAFNYSFS  431 (432)
Q Consensus       402 ~~l~e~i~~~~~~~~~~p~~~~p~~~~~~~  431 (432)
                      .+|.|+++.++++++.||+||||+++|+|.
T Consensus       393 ~kl~eald~~hke~evYPiwlcP~~l~~qp  422 (543)
T KOG1262|consen  393 DKLKEALDTFHKEFEVYPIWLCPFRLYSQP  422 (543)
T ss_pred             HHHHHHHHHHHhhheeeeeeeeeeeccCCC
Confidence            999999999999999999999999999984

>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
4fdn_A481 Mycobacterium Tuberculosis Dpre1 In Complex With Ct 6e-11
4g3t_A403 Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal F 2e-10
4aut_A468 Crystal Structure Of The Tuberculosis Drug Target D 3e-10
4bca_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 9e-07
4bc7_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 9e-07
4bby_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 9e-07
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 4e-06
3pm9_A476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 7e-05
2exr_A524 X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE ( 3e-04
2vfr_A422 Alditol Oxidase From Streptomyces Coelicolor A3(2): 4e-04
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 - Hexagonal Crystal Form Length = 481 Back     alignment and structure 
Iteration: 1

 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 109 VDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYG 168
           +D++    I  ID D  +  ++  VN+ Q+ +A  P  L + V+     +TVGG I    
Sbjct: 92  IDMTPLNTIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTVGGAI-ACD 150
Query: 169 IEGSSH-IYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIK 227
           I G +H   G F + V + +++ ADG++   T   E  +LF+A     G  G+++ A I+
Sbjct: 151 IHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDAELFWATVGGNGLTGIIMRATIE 210
Query: 228 LIPIKEYMKLTYKPVASNLREIAQAYADSFAPR 260
           + P      +    V ++L E    ++D    R
Sbjct: 211 MTPTSTAYFIADGDVTASLDETIALHSDGSEAR 243
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form Length = 403 Back     alignment and structure
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2- Oxidoreductase (Dpre1) From Mycobacterium Smegmatis Length = 468 Back     alignment and structure
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658 Back     alignment and structure
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658 Back     alignment and structure
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 Length = 524 Back     alignment and structure
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native Enzyme Length = 422 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-26
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 5e-24
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 2e-19
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 7e-19
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-18
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 7e-15
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 6e-14
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-13
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 4e-13
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 8e-12
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-11
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 2e-11
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 9e-11
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 3e-10
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 3e-10
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 5e-10
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 4e-09
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 2e-08
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 2e-08
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
 Score =  110 bits (275), Expect = 2e-26
 Identities = 56/329 (17%), Positives = 109/329 (33%), Gaps = 25/329 (7%)

Query: 109 VDLSAFRNI-----LDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGL 163
           V++++  +      +++  D              + RA+    ++     +   LTVGG 
Sbjct: 119 VNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGT 178

Query: 164 INGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVS 223
           ++  GI G +  +G     V+  +++   G++V  +K     DLF A+    G  G++  
Sbjct: 179 LSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-DLFDAVLGGLGQFGVITR 237

Query: 224 AEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIY---T 280
           A I + P     +   + V ++    +       APR G          +VEG ++   +
Sbjct: 238 ARIAVEPAPARAR-WVRFVYTDFAAFSADQERLTAPRPGGGGASFGPMSYVEGSVFVNQS 296

Query: 281 STEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHR 340
               +  TG +   + A+    ++   G       Y   AT              +    
Sbjct: 297 LATDLANTGFFTDADVAR----IVALAGERNATTVYSIEATLNYDNATAAAAAVDQELAS 352

Query: 341 HTRSL-YWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLV 399
              +L Y EG       D  +  FL       +   L           +   H   +M V
Sbjct: 353 VLGTLSYVEGFAFQ--RDVAYAAFLDRV--HGEEVALNKL------GLWRVPHPWLNMFV 402

Query: 400 PLYKVGDALEWQHREVEVNMSFSAPAFNY 428
           P  ++ D      + +        P   Y
Sbjct: 403 PRSRIADFDRGVFKGILQGTDIVGPLIVY 431
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 99.98
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.98
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 99.97
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.97
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 99.97
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.97
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 99.97
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 99.97
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.97
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 99.97
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 99.97
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 99.97
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 99.96
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 99.94
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.94
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.93
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.84
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.84
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.84
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.8
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.8
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.72
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.05
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.16
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 96.79
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 95.28
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 95.28
3unc_A 1332 Xanthine dehydrogenase/oxidase; oxidoreductase; HE 81.99
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
Probab=100.00  E-value=6.9e-35  Score=301.66  Aligned_cols=187  Identities=20%  Similarity=0.240  Sum_probs=161.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcc---cC-CCeEEEEcCCCCCceEEeCCCcEEEEcCCcc
Q 013982           59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDY---KR-ARHFEVDLSAFRNILDIDKDRMIAKVEPLVN  134 (432)
Q Consensus        59 ~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~---~~-~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~  134 (432)
                      .|.+++||+++++++++++.           |+.+.|+|+|..   .. .+|++|||++||+|+++|+++.+++||||++
T Consensus        57 ~P~s~eeV~~~v~~a~~~~~-----------pv~~~GgGt~~~g~~~~~~ggvvIdl~~m~~i~~id~~~~~v~V~aGv~  125 (476)
T 3pm9_A           57 RPGSTEEVVAICKLANEARV-----------ALVPQGGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAI  125 (476)
T ss_dssp             CCCSHHHHHHHHHHHHHHTC-----------CEEEESSSCCSSSTTCCCSSCEEEECTTCCCEEEEETTTTEEEEETTCB
T ss_pred             ecCCHHHHHHHHHHHHHcCC-----------eEEEEeCCCCCCCCccCCCCcEEEEeeCCCceEEEcCCCCeEEECCCcC
Confidence            89999999999999999986           555555555432   22 4689999999999989999999999999999


Q ss_pred             HHHHHHHHccCCceeeeec-CCCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEcC----CCCCcchhh
Q 013982          135 MGQISRATCPMNLSLAVVA-ELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK----DNEYKDLFY  209 (432)
Q Consensus       135 ~~~l~~~l~~~Gl~~~~~p-~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~----~~~~~dL~~  209 (432)
                      +.+|+++|.++|+.+|..| +...+||||++++++.|..+.+||.++|+|+++++|++||++++++.    ++.++||+|
T Consensus       126 ~~~l~~~l~~~Gl~~~~~~~s~~~~tvGG~ia~nagG~~~~~yG~~~d~V~~levV~~dG~v~~~~~~~~k~~~g~dl~~  205 (476)
T 3pm9_A          126 LQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRD  205 (476)
T ss_dssp             HHHHHHHHHHTTEECCCCCTTTTTCBHHHHHHHTCCCTTHHHHCCHHHHEEEEEEECTTSCEEECCCCCSCCCSSCCCHH
T ss_pred             HHHHHHHHHHhCCccCCCCCCCCcEEEccccCCCCCCCcccccCcHHHheeEEEEEccCCeEEEcCCcccCCCCCcCHHH
Confidence            9999999999999988776 46689999999777777778999999999999999999999998743    346889999


Q ss_pred             hcccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHHHh
Q 013982          210 AIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF  257 (432)
Q Consensus       210 a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (432)
                      +++||+|+|||||+++||++|.|+.....+. .|++++++++++.++.
T Consensus       206 l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~-~~~~~~~a~~~~~~~~  252 (476)
T 3pm9_A          206 LFIGAEGTLGIITAATLKLFPKPRAVETAFV-GLQSPDDALKLLGIAQ  252 (476)
T ss_dssp             HHTTSTTSSCEEEEEEEECEECCSEEEEEEE-EESCHHHHHHHHHHHH
T ss_pred             HhccCCCCcEEEEEEEEEEeecCceeEEEEE-EcCCHHHHHHHHHHHH
Confidence            9999999999999999999999986554444 4788999999888764
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 432
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-13
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 3e-10
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 66.9 bits (162), Expect = 2e-13
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 106 HFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLIN 165
              +  +A    +++  D              + RA+    ++     +   LTVGG ++
Sbjct: 82  MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLS 141

Query: 166 GYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAE 225
             GI G +  +G     V+  +++   G++V  +K     DLF A+    G  G++  A 
Sbjct: 142 NAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-DLFDAVLGGLGQFGVITRAR 200

Query: 226 IKLIP 230
           I + P
Sbjct: 201 IAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.94
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.93
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.79
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.76
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.75
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 96.98
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 94.24
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.46
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 87.69
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 85.98
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 81.47
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=7.4e-33  Score=254.23  Aligned_cols=176  Identities=16%  Similarity=0.204  Sum_probs=150.5

Q ss_pred             ccccccccCC---CCCCHHHHHHHHHHHHHhCCCCCce-eeecCCCceeecccCCcccCCCeEEEEcCCCCCc-----eE
Q 013982           49 KSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGL-VCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNI-----LD  119 (432)
Q Consensus        49 w~~~~~~~~~---~p~~~~~v~~iv~~~~~~~~~~~~~-~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i-----~~  119 (432)
                      |+..+...|.   .|++++||+++++++++++.....+ .++++|++.  |.+    ..+++++|||++||+|     ++
T Consensus        22 ~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~--g~s----~~~~~ividl~~l~~i~~~~~~~   95 (206)
T d1w1oa2          22 FGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLM--GQA----FAPGGVVVNMASLGDAAAPPRIN   95 (206)
T ss_dssp             TTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSS--STT----CCTTSEEEEGGGGGCSSSSCSEE
T ss_pred             cccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcc--cCc----ccCCCEeeeccccceeeeceeEE
Confidence            5444444554   8999999999999999975322332 345555442  111    1357899999999998     68


Q ss_pred             EeCCCcEEEEcCCccHHHHHHHHccCCceeeeecCCCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEc
Q 013982          120 IDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT  199 (432)
Q Consensus       120 id~~~~~v~v~~G~~~~~l~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~  199 (432)
                      +|++..+++||||+++.+|+++|.++|+.++..|+...+|+||+++++|+|+.+.+||..+|+|+++|+|++||++++++
T Consensus        96 id~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s  175 (206)
T d1w1oa2          96 VSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS  175 (206)
T ss_dssp             ECTTSSEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEE
T ss_pred             EecCCCEEEEEcceehhhhhhhhhccccccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEEC
Confidence            99999999999999999999999999999887778899999999999999999999999999999999999999999999


Q ss_pred             CCCCCcchhhhcccccCCceEEEEEEEEeEEc
Q 013982          200 KDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPI  231 (432)
Q Consensus       200 ~~~~~~dL~~a~~gs~G~lGiVt~~~lkl~p~  231 (432)
                      ++ +++||||+++||+|+|||||+++||++|+
T Consensus       176 ~~-~~~dl~~a~~g~~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         176 KQ-LNADLFDAVLGGLGQFGVITRARIAVEPA  206 (206)
T ss_dssp             SS-SSHHHHHHHTTCTTCSEEEEEEEEEEEEC
T ss_pred             CC-CCHHHHHHHhhCCCccEeEEEEEEEEEcC
Confidence            87 89999999999999999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure