Citrus Sinensis ID: 013989

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
ccccccccccEEEEEcccccccccccccccHHHHHHHccccccccccccHHcccccccccHHHHHHHHHccccccccEEEEEEEEEccccccccccEEEEcccccccccccccccccccccccccccccEEEEccEEEEccccccccEEEEEEEcccccccccccHHHHHHHHHHHccccccccEEcccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHcccc
ccEEEcccccEEEEEcccccccccccHHHHHHHHHHHHcccccccccccEEEcccccHHHHHHHHHHHcccccccccEEEEEEEEEEcccccccccccccccccccHHHcccEccccccccccccccccEEEEEEEEccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccEEEccccccEEHHHHHHHHHHHHHHccEEEcccccEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEcccccEEEEcccHHHcccccccccccccccccHHHHHHHHHHEEccccccHHHHHHHHHHHHcc
maqilapsmqwqmrmpkysniaspmTTKMWSSLLMKQnkkgtnrssAKFRVLALKSEDSTVNRLEDllnlditpytdKIIAEYIWIGgtgidmrsksktiskpvehpselpkwnydgsstgqapgedsevilypqaifkdpfrggnniLVICdtytpagepiptnkrhrAAEIfsnskvsaevpwfgIEQEYTLLQQnvkwplgwpvgaypgpqgpyycgagadksfgrdIADAHYKACLYAGinisgtngevmpgqweyqvgpsvgidagdhiWCSRYLLERITEQAGvvlsldpkpiegdwngagchtnystksmreeggYETIKKAILNLSLRHKEHISaygegnerrltgkhetasidSFSWgvanrgcsirvgretekqgkgyledrrpasnmdpYVVTSLLAETTILWEPTLEAEALAAQKLALNV
maqilapsmqwqMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLalksedstvnrledllnlditpytDKIIAEYIWIGGTGIDMRSKSKTISKpvehpselpkwnydGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDpkpiegdwngagCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAygegnerrltGKHETasidsfswgvanrgcsirvgretekqgkgyledrrpasnmDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTleaealaaqklalNV
**************************************************VLAL****STVNRLEDLLNLDITPYTDKIIAEYIWIGGTGID*************************************VILYPQAIFKDPFRGGNNILVICDTYTPAGEPI******RAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTK****EGGYETIKKAILNLSLRHKEHISAYG*************ASIDSFSWGVANRGCSIRVG********************DPYVVTSLLAETTILWEPTLEAEAL*********
*****A*SMQWQMRM****************************************************LNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
*AQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSST****GEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKL**N*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
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MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALNV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query432 2.2.26 [Sep-21-2011]
O22506432 Glutamine synthetase, chl N/A no 1.0 1.0 0.877 0.0
P15102429 Glutamine synthetase leaf N/A no 0.993 1.0 0.893 0.0
P08281430 Glutamine synthetase leaf N/A no 0.995 1.0 0.865 0.0
Q9XQ94428 Glutamine synthetase leaf N/A no 0.990 1.0 0.861 0.0
Q43127430 Glutamine synthetase, chl yes no 0.995 1.0 0.849 0.0
Q42624428 Glutamine synthetase, chl N/A no 0.990 1.0 0.831 0.0
P14655428 Glutamine synthetase, chl yes no 0.988 0.997 0.787 0.0
P25462423 Glutamine synthetase, chl N/A no 0.942 0.962 0.770 0.0
P13564434 Glutamine synthetase leaf N/A no 0.865 0.861 0.832 0.0
Q42899356 Glutamine synthetase cyto N/A no 0.817 0.991 0.796 1e-176
>sp|O22506|GLNA2_DAUCA Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1 Back     alignment and function desciption
 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/432 (87%), Positives = 408/432 (94%)

Query: 1   MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
           MAQILAPS+QWQMR  K S   S MT+KMW SL +KQNKK   RSS K+R LA+KSED T
Sbjct: 1   MAQILAPSVQWQMRFTKNSTEVSSMTSKMWGSLFLKQNKKAPARSSTKYRALAVKSEDGT 60

Query: 61  VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSST 120
           +NR+EDLLNLD+TPYTDKIIAEYIWIGGTGID+RSKS+TISKPVEHPSELPKWNYDGSST
Sbjct: 61  INRMEDLLNLDVTPYTDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSST 120

Query: 121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVS 180
           GQAPG+DSEVILYPQAIFKDPFRGGNNILVICDTYTP GEPIPTNKRH+AA+IFS++KV 
Sbjct: 121 GQAPGDDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHKAAQIFSDAKVL 180

Query: 181 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 240
            EVPWFGIEQEYTL+QQ+V WPLGW VG YPGPQGPYYC AGADKSFGRDI+DAHYKACL
Sbjct: 181 GEVPWFGIEQEYTLMQQDVNWPLGWNVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACL 240

Query: 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE 300
           YAGINISGTNGEVMPGQWE+QVGPSVGI+AGDHIWC+RYLLERITEQAGVVL+LDPKPI+
Sbjct: 241 YAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYLLERITEQAGVVLTLDPKPID 300

Query: 301 GDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360
           GDWNGAGCHTNYSTKSMREEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS
Sbjct: 301 GDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360

Query: 361 IDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEA 420
           IDSFSWGVA+RGCSIRVGR+TEK+GKGYLEDRRPASNMDPYVVT LLAETT+LWEPTLEA
Sbjct: 361 IDSFSWGVADRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTGLLAETTLLWEPTLEA 420

Query: 421 EALAAQKLALNV 432
           EALAAQKL+LNV
Sbjct: 421 EALAAQKLSLNV 432
The light-modulated chloroplast enzyme, encoded by a nuclear gene and expressed primarily in leaves, is responsible for the reassimilation of the ammonia generated by photorespiration.
Daucus carota (taxid: 4039)
EC: 6EC: .EC: 3EC: .EC: 1EC: .EC: 2
>sp|P15102|GLNA4_PHAVU Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1 Back     alignment and function description
>sp|P08281|GLNA2_PEA Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2 Back     alignment and function description
>sp|Q9XQ94|GLNA2_MEDSA Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1 Back     alignment and function description
>sp|Q43127|GLNA2_ARATH Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1 Back     alignment and function description
>sp|Q42624|GLNAC_BRANA Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1 Back     alignment and function description
>sp|P14655|GLNA2_ORYSJ Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1 Back     alignment and function description
>sp|P25462|GLNAC_MAIZE Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1 Back     alignment and function description
>sp|P13564|GLNA2_HORVU Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2 Back     alignment and function description
>sp|Q42899|GLNA1_LOTJA Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
224107259432 predicted protein [Populus trichocarpa] 1.0 1.0 0.902 0.0
224102579432 predicted protein [Populus trichocarpa] 1.0 1.0 0.900 0.0
255551511432 glutamine synthetase plant, putative [Ri 1.0 1.0 0.907 0.0
193290696432 putative glutamine synthase 2 [Capsicum 1.0 1.0 0.888 0.0
40457328432 glutamine synthetase GS58 [Nicotiana att 1.0 1.0 0.891 0.0
225432496432 PREDICTED: glutamine synthetase leaf iso 1.0 1.0 0.895 0.0
300678122429 plastid glutamine synthetase [Vigna radi 0.993 1.0 0.895 0.0
356555606432 PREDICTED: glutamine synthetase leaf iso 1.0 1.0 0.891 0.0
8928128432 RecName: Full=Glutamine synthetase, chlo 1.0 1.0 0.877 0.0
449432749432 PREDICTED: glutamine synthetase leaf iso 1.0 1.0 0.881 0.0
>gi|224107259|ref|XP_002314425.1| predicted protein [Populus trichocarpa] gi|222863465|gb|EEF00596.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/432 (90%), Positives = 413/432 (95%)

Query: 1   MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
           MAQILAPS QWQMR+ K S  A PMT KMWSSL++KQNKKG  +SSAKFRV ALKSE+ST
Sbjct: 1   MAQILAPSSQWQMRIAKNSAPACPMTAKMWSSLVLKQNKKGIAKSSAKFRVFALKSENST 60

Query: 61  VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSST 120
           +NR+EDLLNLD+TPYTDK IAEYIWIGG+GID+RSKS+TISKP+EHPSELPKWNYDGSST
Sbjct: 61  INRMEDLLNLDLTPYTDKFIAEYIWIGGSGIDLRSKSRTISKPIEHPSELPKWNYDGSST 120

Query: 121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVS 180
           GQAPGEDSEVILYPQAIFKDPFRGGNNILV+CDTYTP GEPIPTNKRHRAAEIFSN KV 
Sbjct: 121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPQGEPIPTNKRHRAAEIFSNKKVI 180

Query: 181 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 240
            EVPWFGIEQEYTLLQ NVKWPLGWPVG YPGPQGPYYCGAGADKSFGRDI+DAHYKAC+
Sbjct: 181 DEVPWFGIEQEYTLLQTNVKWPLGWPVGGYPGPQGPYYCGAGADKSFGRDISDAHYKACM 240

Query: 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE 300
           YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIW SRY+LERITEQAGVVLSLDPKPIE
Sbjct: 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWISRYILERITEQAGVVLSLDPKPIE 300

Query: 301 GDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360
           GDWNGAGCHTNYSTK+MREEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS
Sbjct: 301 GDWNGAGCHTNYSTKTMREEGGFEAIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360

Query: 361 IDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEA 420
           ID+FSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPY+VTSLLAETTIL+EPTLEA
Sbjct: 361 IDTFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYIVTSLLAETTILYEPTLEA 420

Query: 421 EALAAQKLALNV 432
           EALAAQKL++NV
Sbjct: 421 EALAAQKLSMNV 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102579|ref|XP_002312733.1| predicted protein [Populus trichocarpa] gi|118486227|gb|ABK94955.1| unknown [Populus trichocarpa] gi|222852553|gb|EEE90100.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551511|ref|XP_002516801.1| glutamine synthetase plant, putative [Ricinus communis] gi|223543889|gb|EEF45415.1| glutamine synthetase plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|193290696|gb|ACF17656.1| putative glutamine synthase 2 [Capsicum annuum] Back     alignment and taxonomy information
>gi|40457328|gb|AAR86719.1| glutamine synthetase GS58 [Nicotiana attenuata] Back     alignment and taxonomy information
>gi|225432496|ref|XP_002279497.1| PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera] gi|297736964|emb|CBI26165.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|300678122|gb|ADK27329.1| plastid glutamine synthetase [Vigna radiata] Back     alignment and taxonomy information
>gi|356555606|ref|XP_003546121.1| PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|8928128|sp|O22506.1|GLNA2_DAUCA RecName: Full=Glutamine synthetase, chloroplastic; AltName: Full=GS2; AltName: Full=Glutamate--ammonia ligase; Flags: Precursor gi|2454633|gb|AAB71693.1| glutamine synthetase [Daucus carota] Back     alignment and taxonomy information
>gi|449432749|ref|XP_004134161.1| PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2165897430 GS2 "glutamine synthetase 2" [ 0.995 1.0 0.821 3.2e-200
TAIR|locus:2151739356 GSR 1 "glutamine synthase clon 0.817 0.991 0.798 5.5e-164
TAIR|locus:2174175356 GLN1;4 "glutamine synthetase 1 0.824 1.0 0.780 7.3e-162
TAIR|locus:2088580354 GLN1.3 "glutamine synthetase 1 0.810 0.988 0.765 2.7e-155
TAIR|locus:2198080353 GLN1;5 "glutamine synthetase 1 0.807 0.988 0.725 5.4e-150
FB|FBgn0001145369 Gs2 "Glutamine synthetase 2" [ 0.831 0.972 0.573 2e-111
ASPGD|ASPL0000016342357 glnA [Emericella nidulans (tax 0.807 0.977 0.570 6.1e-110
UNIPROTKB|G4NG12358 MGG_14279 "Glutamine synthetas 0.793 0.958 0.565 4.3e-109
WB|WBGene00001604388 gln-3 [Caenorhabditis elegans 0.821 0.914 0.560 2.7e-107
SGD|S000006239370 GLN1 "Glutamine synthetase (GS 0.787 0.918 0.561 4.4e-107
TAIR|locus:2165897 GS2 "glutamine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1938 (687.3 bits), Expect = 3.2e-200, P = 3.2e-200
 Identities = 355/432 (82%), Positives = 392/432 (90%)

Query:     1 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
             MAQILA S   QMR+PK+S++ +  ++K+WSS+++KQ K+  N+    FRVLAL+S++ST
Sbjct:     1 MAQILAASPTCQMRVPKHSSVIAS-SSKLWSSVVLKQKKQSNNKVRG-FRVLALQSDNST 58

Query:    61 VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSST 120
             VNR+E LLNLD  PY+D+IIAEYIWIGG+GID+RSKS+TI KPVE PSELPKWNYDGSST
Sbjct:    59 VNRVETLLNLDTKPYSDRIIAEYIWIGGSGIDLRSKSRTIEKPVEDPSELPKWNYDGSST 118

Query:   121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVS 180
             GQAPGEDSEVILYPQAIF+DPFRGGNNILVICDT+TPAGEPIPTNKR +AAEIFSN KVS
Sbjct:   119 GQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRAKAAEIFSNKKVS 178

Query:   181 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 240
              EVPWFGIEQEYTLLQQNVKWPLGWPVGA+PGPQGPYYCG GADK +GRDI+DAHYKACL
Sbjct:   179 GEVPWFGIEQEYTLLQQNVKWPLGWPVGAFPGPQGPYYCGVGADKIWGRDISDAHYKACL 238

Query:   241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE 300
             YAGINISGTNGEVMPGQWE+QVGPSVGIDAGDH+WC+RYLLERITEQAGVVL+LDPKPIE
Sbjct:   239 YAGINISGTNGEVMPGQWEFQVGPSVGIDAGDHVWCARYLLERITEQAGVVLTLDPKPIE 298

Query:   301 GDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360
             GDWNGAGCHTNYSTKSMREEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS
Sbjct:   299 GDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 358

Query:   361 IDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTXXX 420
             ID FSWGVANRGCSIRVGR+TE +GKGYLEDRRPASNMDPY+VTSLLAETT+LWEPT   
Sbjct:   359 IDQFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEPTLEA 418

Query:   421 XXXXXXXXXXNV 432
                       NV
Sbjct:   419 EALAAQKLSLNV 430
GO:0003824 "catalytic activity" evidence=IEA
GO:0004356 "glutamate-ammonia ligase activity" evidence=IEA;ISS;IDA;TAS
GO:0006542 "glutamine biosynthetic process" evidence=IEA
GO:0006807 "nitrogen compound metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA;NAS
GO:0007568 "aging" evidence=TAS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0019676 "ammonia assimilation cycle" evidence=TAS
GO:0009579 "thylakoid" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0048046 "apoplast" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009637 "response to blue light" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0010114 "response to red light" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0010218 "response to far red light" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
TAIR|locus:2151739 GSR 1 "glutamine synthase clone R1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174175 GLN1;4 "glutamine synthetase 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088580 GLN1.3 "glutamine synthetase 1.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198080 GLN1;5 "glutamine synthetase 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0001145 Gs2 "Glutamine synthetase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000016342 glnA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4NG12 MGG_14279 "Glutamine synthetase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
WB|WBGene00001604 gln-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
SGD|S000006239 GLN1 "Glutamine synthetase (GS)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q43127GLNA2_ARATH6, ., 3, ., 1, ., 20.84950.99531.0yesno
P14654GLN12_ORYSJ6, ., 3, ., 1, ., 20.78120.81480.9859nono
P00965GLNA3_PHAVU6, ., 3, ., 1, ., 20.76680.82401.0N/Ano
P14656GLN11_ORYSJ6, ., 3, ., 1, ., 20.79320.81710.9915nono
P08281GLNA2_PEA6, ., 3, ., 1, ., 20.86570.99531.0N/Ano
Q43785GLNA3_MEDSA6, ., 3, ., 1, ., 20.78180.81710.9915N/Ano
P14655GLNA2_ORYSJ6, ., 3, ., 1, ., 20.78750.98840.9976yesno
P23712GLNA_LACSA6, ., 3, ., 1, ., 20.79540.81480.9832N/Ano
Q9FMD9GLN14_ARATH6, ., 3, ., 1, ., 20.78080.82401.0nono
Q9LVI8GLN13_ARATH6, ., 3, ., 1, ., 20.76570.81010.9887nono
Q43066GLNA4_PEA6, ., 3, ., 1, ., 20.77460.82170.9943N/Ano
P25462GLNAC_MAIZE6, ., 3, ., 1, ., 20.77030.94210.9621N/Ano
P12424GLNA_NICPL6, ., 3, ., 1, ., 20.780.81010.9831N/Ano
Q8LCE1GLN12_ARATH6, ., 3, ., 1, ., 20.80730.81710.9915nono
P38560GLNA2_MAIZE6, ., 3, ., 1, ., 20.74850.81710.9592N/Ano
P15102GLNA4_PHAVU6, ., 3, ., 1, ., 20.89350.99301.0N/Ano
O82560GLNA2_SOYBN6, ., 3, ., 1, ., 20.77050.81710.9915nono
O22506GLNA2_DAUCA6, ., 3, ., 1, ., 20.87731.01.0N/Ano
P38563GLNA5_MAIZE6, ., 3, ., 1, ., 20.78690.81480.9859N/Ano
O22504GLNA1_DAUCA6, ., 3, ., 1, ., 20.76850.80780.9914N/Ano
P38561GLNA3_MAIZE6, ., 3, ., 1, ., 20.77620.81710.9915N/Ano
O04867GLNA1_ALNGL6, ., 3, ., 1, ., 20.80160.81710.9915N/Ano
P14636GLNA3_LUPAN6, ., 3, ., 1, ., 20.76280.72220.9904N/Ano
Q42624GLNAC_BRANA6, ., 3, ., 1, ., 20.83100.99071.0N/Ano
P08282GLNA1_PEA6, ., 3, ., 1, ., 20.77620.81710.9943N/Ano
Q56WN1GLN11_ARATH6, ., 3, ., 1, ., 20.79880.81710.9915nono
Q4W8D0GLN13_ORYSJ6, ., 3, ., 1, ., 20.74850.81940.9567nono
P51118GLNA1_VITVI6, ., 3, ., 1, ., 20.79880.81710.9915nono
P51119GLNA2_VITVI6, ., 3, ., 1, ., 20.79600.81710.9915nono
P38562GLNA4_MAIZE6, ., 3, ., 1, ., 20.77330.81480.9915N/Ano
P13564GLNA2_HORVU6, ., 3, ., 1, ., 20.8320.86570.8617N/Ano
P52782GLNA_LUPLU6, ., 3, ., 1, ., 20.78280.81010.9915N/Ano
P52783GLNA_PINSY6, ., 3, ., 1, ., 20.76480.81710.9887N/Ano
P24099GLNA1_SOYBN6, ., 3, ., 1, ., 20.77050.81480.9915nono
P20478GLNA2_DROME6, ., 3, ., 1, ., 20.57100.83100.9728yesno
Q9XQ94GLNA2_MEDSA6, ., 3, ., 1, ., 20.86110.99071.0N/Ano
Q42899GLNA1_LOTJA6, ., 3, ., 1, ., 20.79600.81710.9915N/Ano
P38559GLNA1_MAIZE6, ., 3, ., 1, ., 20.79480.81250.9831N/Ano
P04078GLNA1_MEDSA6, ., 3, ., 1, ., 20.79600.81710.9915N/Ano
P32289GLNA_VIGAC6, ., 3, ., 1, ., 20.79030.81710.9915N/Ano
Q42688GLNA1_CHLRE6, ., 3, ., 1, ., 20.59890.81710.9240N/Ano
Q86ZF9GLNA_NEUCR6, ., 3, ., 1, ., 20.56230.82170.9806N/Ano
P07694GLNA3_PEA6, ., 3, ., 1, ., 20.77740.82170.9943N/Ano
Q06378GLNA3_HORVU6, ., 3, ., 1, ., 20.76240.78930.9578N/Ano
P04770GLNA1_PHAVU6, ., 3, ., 1, ., 20.78470.81710.9915N/Ano
P04771GLNA2_PHAVU6, ., 3, ., 1, ., 20.78470.81710.9915N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.10.998
3rd Layer6.3.1.20.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_X4165
glutamine synthetase (432 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.184.28.1
malate dehydrogenase (213 aa)
      • 0.508
grail3.0001073802
SubName- Full=Putative uncharacterized protein; (354 aa)
      • 0.508
fgenesh4_pm.C_LG_I001100
malate dehydrogenase (EC-1.1.1.37) (356 aa)
      • 0.508
fgenesh4_pg.C_LG_IV000431
malate dehydrogenase (EC-1.1.1.37) (348 aa)
      • 0.508
eugene3.00081537
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)
      • 0.508
eugene3.00021311
hypothetical protein (334 aa)
      • 0.508
eugene3.00021309
malate dehydrogenase (EC-1.1.1.37) (332 aa)
      • 0.508
estExt_fgenesh4_pg.C_LG_XI0680
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (341 aa)
      • 0.508
estExt_fgenesh4_pg.C_LG_VII1232
malate dehydrogenase (EC-1.1.1.37) (355 aa)
      • 0.508
estExt_Genewise1_v1.C_LG_I4975
malate dehydrogenase (EC-1.1.1.37) (340 aa)
      • 0.508

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
PLN03036432 PLN03036, PLN03036, glutamine synthetase; Provisio 0.0
PLN02284354 PLN02284, PLN02284, glutamine synthetase 0.0
pfam00120259 pfam00120, Gln-synt_C, Glutamine synthetase, catal 2e-82
COG0174443 COG0174, GlnA, Glutamine synthetase [Amino acid tr 1e-65
pfam0395184 pfam03951, Gln-synt_N, Glutamine synthetase, beta- 2e-19
TIGR00653459 TIGR00653, GlnA, glutamine synthetase, type I 1e-13
COG3968 724 COG3968, COG3968, Uncharacterized protein related 1e-04
>gnl|CDD|178603 PLN03036, PLN03036, glutamine synthetase; Provisional Back     alignment and domain information 
 Score =  898 bits (2322), Expect = 0.0
 Identities = 395/432 (91%), Positives = 419/432 (96%)

Query: 1   MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDST 60
           MAQILAPS Q QMR+PK S +A+PMT+K+WSSL++KQ KKGT + S KFRVLAL+SE+ST
Sbjct: 1   MAQILAPSPQCQMRVPKNSAVAAPMTSKLWSSLVLKQKKKGTAKVSGKFRVLALQSENST 60

Query: 61  VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSST 120
           VNR+EDLLNLD TPYTD+IIAEYIWIGG+GID+RSKS+TISKPVEHPSELPKWNYDGSST
Sbjct: 61  VNRVEDLLNLDTTPYTDRIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSST 120

Query: 121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVS 180
           GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSN KV 
Sbjct: 121 GQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKKVV 180

Query: 181 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 240
            EVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDI+DAHYKACL
Sbjct: 181 DEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACL 240

Query: 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIE 300
           YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRY+LERITEQAGVVL+LDPKPIE
Sbjct: 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE 300

Query: 301 GDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360
           GDWNGAGCHTNYSTKSMREEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS
Sbjct: 301 GDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETAS 360

Query: 361 IDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEA 420
           ID+FSWGVANRGCSIRVGR+TEK+GKGYLEDRRPASNMDPY+VTSLLAETTILWEPTLEA
Sbjct: 361 IDTFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDPYIVTSLLAETTILWEPTLEA 420

Query: 421 EALAAQKLALNV 432
           EALAAQKL+LNV
Sbjct: 421 EALAAQKLSLNV 432

Length = 432
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase Back     alignment and domain information
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain Back     alignment and domain information
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain Back     alignment and domain information
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I Back     alignment and domain information
>gnl|CDD|226477 COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
PLN03036432 glutamine synthetase; Provisional 100.0
PLN02284354 glutamine synthetase 100.0
KOG0683380 consensus Glutamine synthetase [Amino acid transpo 100.0
COG0174443 GlnA Glutamine synthetase [Amino acid transport an 100.0
TIGR00653460 GlnA glutamine synthetase, type I. Alternate name: 100.0
PRK09469469 glnA glutamine synthetase; Provisional 100.0
TIGR03105435 gln_synth_III glutamine synthetase, type III. This 100.0
PF00120259 Gln-synt_C: Glutamine synthetase, catalytic domain 100.0
COG3968 724 Uncharacterized protein related to glutamine synth 99.75
PF0395184 Gln-synt_N: Glutamine synthetase, beta-Grasp domai 99.53
TIGR02050287 gshA_cyan_rel uncharacterized enzyme. This family 98.64
PRK13517 373 carboxylate-amine ligase; Provisional 98.58
PRK13516373 gamma-glutamyl:cysteine ligase; Provisional 98.47
PRK13515 371 carboxylate-amine ligase; Provisional 98.39
PLN02611 482 glutamate--cysteine ligase 97.93
PRK13518 357 carboxylate-amine ligase; Provisional 97.72
TIGR01436 446 glu_cys_lig_pln glutamate--cysteine ligase, plant 97.55
TIGR02048 376 gshA_cyano glutamate--cysteine ligase, cyanobacter 97.51
PF04107288 GCS2: Glutamate-cysteine ligase family 2(GCS2); In 97.5
COG2170369 Uncharacterized conserved protein [Function unknow 97.31
TIGR03444 390 gshA_related glutamate--cysteine ligase family pro 93.52
KOG0683380 consensus Glutamine synthetase [Amino acid transpo 80.36
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 80.23
>PLN03036 glutamine synthetase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.8e-123  Score=957.49  Aligned_cols=432  Identities=91%  Similarity=1.475  Sum_probs=408.2

Q ss_pred             CCccCCCCcceeeecccccCCCCCchhhhhhhHHHHHhhccCcccccceEEEEeecchhHHHHHHHHhccCCCCCCCeEE
Q 013989            1 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKII   80 (432)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (432)
                      |||||+||+||||||+|.++.+.++++++|+|+++||+|++......+||++++......+..++.|++++..+|.++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (432)
T PLN03036          1 MAQILAPSPQCQMRVPKNSAVAAPMTSKLWSSLVLKQKKKGTAKVSGKFRVLALQSENSTVNRVEDLLNLDTTPYTDRII   80 (432)
T ss_pred             CCcccccccccccCCCCCCCcccccccceecccchhhhhhhhhhcccceeeeeccccchhhhhHHHHhhhcccccCCeEE
Confidence            99999999999999999999999999999999999999998877789999999776654577788888888777899999


Q ss_pred             EEEEEEeCccccccceEEEEeccCCCCCCCCCccccCCCCCCCCCCCccEEEEEEeccccCCCCCCeEEEEEEEecCCCC
Q 013989           81 AEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE  160 (432)
Q Consensus        81 ~~yvwidg~g~Dlrgk~r~~~~p~~~~~~~~~~~fdgss~g~~~~~~~D~~L~PD~~~~~P~~~~~~a~Vlcd~~~~dG~  160 (432)
                      +|||||||++.|||||+|++.+|+++++++++|+|||||+||++++++|++|+||+++++||+++++++|+||+|++||+
T Consensus        81 ~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~~~~sD~~l~PDTl~~~Pw~~~~~a~Vlcd~y~~dG~  160 (432)
T PLN03036         81 AEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE  160 (432)
T ss_pred             EEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCcCCCCCEEEEccEEEECCcCCCCeEEEEEEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999876799999999999999


Q ss_pred             cCCCCHHHHHHHHHHhhccCccccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccChhhHHHHHHHHHHHHH
Q 013989          161 PIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL  240 (432)
Q Consensus       161 P~~~~pR~~Lk~~l~~l~~~G~~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~al~  240 (432)
                      |++.|||+.|++++++++..|+++++|+|+|||||+.+.+++.|||.+++|.++++|||..+.+..+.++++++|+++|+
T Consensus       161 P~~~dpR~~L~~vl~~~~~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~~~~d~~~~~~i~~~i~~a~~  240 (432)
T PLN03036        161 PIPTNKRHRAAEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACL  240 (432)
T ss_pred             CCCCCHHHHHHHHHHHhcccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCCchhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999889999999999999999876445778887788999999999998888888999999999999


Q ss_pred             HcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccCC
Q 013989          241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREE  320 (432)
Q Consensus       241 ~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~~  320 (432)
                      ++||+|+++|+|+|||||||+++|+++|+|||+++++|++||+||++||++|||||||+.++|+|||||+|+||++++++
T Consensus       241 ~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~gd~~GSGmHiH~Sl~d~r~~  320 (432)
T PLN03036        241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREE  320 (432)
T ss_pred             HCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCCcCCCCceeEechhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999877899999999999998766


Q ss_pred             CchHHHHHHHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeecccCCCCCccEEEecCCCCCCCH
Q 013989          321 GGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDP  400 (432)
Q Consensus       321 ~g~~~~~~~iaGl~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~~~~~~~~r~E~R~pda~aNP  400 (432)
                      +|.+.++++++||+|+|++||+||++||||||+|++|||+|++++||++||+++||||......+++|||+|+||++|||
T Consensus       321 gg~~~~~~~i~gl~l~H~~~i~A~~~NsykRL~~~~ea~~p~~~swG~~NR~asIRIP~~~~~~~~~riE~R~pda~aNP  400 (432)
T PLN03036        321 GGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDP  400 (432)
T ss_pred             chHHHHHHHHhhHHHHHHHHHHhhhcChhhccCCCccccCCccceEeccCCcceEEECCCCCCCcccEEEEeCCCCCCCH
Confidence            68899999999977999999999999999999999999888899999999999999998764444789999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCchhHHHHHhhhhccC
Q 013989          401 YVVTSLLAETTILWEPTLEAEALAAQKLALNV  432 (432)
Q Consensus       401 YLalAailaagl~G~~~~~~~~~~~~~~~~~~  432 (432)
                      |||+|+|+.++++.+|+||||+||||||+|||
T Consensus       401 YLv~aai~~t~~~~~~~~~~~~~~~~~~~~~~  432 (432)
T PLN03036        401 YIVTSLLAETTILWEPTLEAEALAAQKLSLNV  432 (432)
T ss_pred             HHHHHHHHHHHhcCCcchhHHHHHhhhhccCC
Confidence            99999999999999999999999999999997

>PLN02284 glutamine synthetase Back     alignment and domain information
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00653 GlnA glutamine synthetase, type I Back     alignment and domain information
>PRK09469 glnA glutamine synthetase; Provisional Back     alignment and domain information
>TIGR03105 gln_synth_III glutamine synthetase, type III Back     alignment and domain information
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6 Back     alignment and domain information
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only] Back     alignment and domain information
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6 Back     alignment and domain information
>TIGR02050 gshA_cyan_rel uncharacterized enzyme Back     alignment and domain information
>PRK13517 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional Back     alignment and domain information
>PRK13515 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PLN02611 glutamate--cysteine ligase Back     alignment and domain information
>PRK13518 carboxylate-amine ligase; Provisional Back     alignment and domain information
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type Back     alignment and domain information
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative Back     alignment and domain information
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6 Back     alignment and domain information
>COG2170 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR03444 gshA_related glutamate--cysteine ligase family protein Back     alignment and domain information
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
2d3a_A356 Crystal Structure Of The Maize Glutamine Synthetase 1e-173
3fky_A370 Crystal Structure Of The Glutamine Synthetase Gln1d 1e-113
2uu7_A381 Crystal Structure Of Apo Glutamine Synthetase From 1e-111
2ojw_A384 Crystal Structure Of Human Glutamine Synthetase In 1e-109
1hto_A477 Crystallographic Structure Of A Relaxed Glutamine S 5e-06
2bvc_A486 Crystal Structure Of Mycobacterium Tuberculosis Glu 5e-06
>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase Complexed With Adp And Methionine Sulfoximine Phosphate Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  603 bits (1554), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 276/353 (78%), Positives = 319/353 (90%)
Query: 64  LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQA 123
           L DL+NL+++  T+KIIAEYIWIGG+G+D+RSK++T+  PV  PS+LPKWNYDGSSTGQA
Sbjct: 4   LTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQA 63
Query: 124 PGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEV 183
           PGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+IFS+ +V+AE 
Sbjct: 64  PGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEE 123
Query: 184 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAG 243
           PW+GIEQEYTLLQ++  WPLGWP+G +PGPQGPYYCG GA+KSFGRDI DAHYKACLYAG
Sbjct: 124 PWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAG 183
Query: 244 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDW 303
           INISG NGEVMPGQWE+QVGPSVGI +GD +W +RY+LERITE AGVV++ DPKPI GDW
Sbjct: 184 INISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDW 243
Query: 304 NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDS 363
           NGAG HTNYST+SMR+EGGYE IK AI  L LRHKEHI+AYGEGNERRLTG+HETA I++
Sbjct: 244 NGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINT 303
Query: 364 FSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 416
           FSWGVANRG S+RVGRETE+ GKGY EDRRPASNMDPYVVTS++AETTI+W+P
Sbjct: 304 FSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356
>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18 From The Yeast Saccharomyces Cerevisiae Length = 370 Back     alignment and structure
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog ( Canis Familiaris) Length = 381 Back     alignment and structure
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex With Adp And Phosphate Length = 384 Back     alignment and structure
>pdb|1HTO|A Chain A, Crystallographic Structure Of A Relaxed Glutamine Synthetase From Mycobacterium Tuberculosis Length = 477 Back     alignment and structure
>pdb|2BVC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine Synthetase In Complex With A Transition State Mimic Length = 486 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
2d3a_A356 Glutamine synthetase; ligase; HET: P3S ADP; 2.63A 0.0
2ojw_A384 Glutamine synthetase; amino-acid biosynthesis, lig 0.0
3fky_A370 Glutamine synthetase; beta-grAsp, catalytic domain 0.0
2j9i_A421 Glutamate-ammonia ligase domain-containing protein 7e-11
3o6x_A 729 Glutamine synthetase; type III, beta barrel,dodeca 5e-09
3qaj_A444 Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G 4e-08
3ng0_A473 Glutamine synthetase; GSI, nitrogen metabolism, sy 3e-07
2bvc_A486 Glutamine synthetase 1; ligase, transition state m 1e-06
1f52_A468 Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 1e-06
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Length = 356 Back     alignment and structure
 Score =  579 bits (1494), Expect = 0.0
 Identities = 276/354 (77%), Positives = 319/354 (90%)

Query: 63  RLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQ 122
            L DL+NL+++  T+KIIAEYIWIGG+G+D+RSK++T+  PV  PS+LPKWNYDGSSTGQ
Sbjct: 3   CLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQ 62

Query: 123 APGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAE 182
           APGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+IFS+ +V+AE
Sbjct: 63  APGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAE 122

Query: 183 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYA 242
            PW+GIEQEYTLLQ++  WPLGWP+G +PGPQGPYYCG GA+KSFGRDI DAHYKACLYA
Sbjct: 123 EPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYA 182

Query: 243 GINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGD 302
           GINISG NGEVMPGQWE+QVGPSVGI +GD +W +RY+LERITE AGVV++ DPKPI GD
Sbjct: 183 GINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGD 242

Query: 303 WNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASID 362
           WNGAG HTNYST+SMR+EGGYE IK AI  L LRHKEHI+AYGEGNERRLTG+HETA I+
Sbjct: 243 WNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADIN 302

Query: 363 SFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 416
           +FSWGVANRG S+RVGRETE+ GKGY EDRRPASNMDPYVVTS++AETTI+W+P
Sbjct: 303 TFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Length = 384 Back     alignment and structure
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Length = 370 Back     alignment and structure
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Length = 421 Back     alignment and structure
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Length = 729 Back     alignment and structure
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Length = 473 Back     alignment and structure
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1 d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A* 1htq_A* Length = 486 Back     alignment and structure
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Length = 468 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
3fky_A370 Glutamine synthetase; beta-grAsp, catalytic domain 100.0
2d3a_A356 Glutamine synthetase; ligase; HET: P3S ADP; 2.63A 100.0
2ojw_A384 Glutamine synthetase; amino-acid biosynthesis, lig 100.0
3ng0_A473 Glutamine synthetase; GSI, nitrogen metabolism, sy 100.0
3qaj_A444 Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G 100.0
4hpp_A443 Probable glutamine synthetase; glutamine synthase 100.0
1f52_A468 Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 100.0
4acf_A486 Glutamine synthetase 1; ligase, nucleotide-binding 100.0
2j9i_A421 Glutamate-ammonia ligase domain-containing protein 100.0
3o6x_A 729 Glutamine synthetase; type III, beta barrel,dodeca 100.0
1r8g_A 372 Hypothetical protein YBDK; structural genomics, un 98.22
2gwd_A 449 Glutamate cysteine ligase; disulfide bridges, glut 97.99
3ln6_A 750 Glutathione biosynthesis bifunctional protein GSH; 96.26
3ln7_A 757 Glutathione biosynthesis bifunctional protein GSH; 88.17
1va6_A 518 Glutamate--cysteine ligase; glutathione homeostasi 80.92
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=3.3e-98  Score=762.81  Aligned_cols=349  Identities=55%  Similarity=1.022  Sum_probs=306.6

Q ss_pred             HHHHHHhccCCCCCCCeEEEEEEEEeCccccccceEEEEeccCCCCCCCCCccccCCCCCCCCCCCccEEEEEEeccccC
Q 013989           62 NRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP  141 (432)
Q Consensus        62 ~~~~~~~~~~~~~~~~~v~~~yvwidg~g~Dlrgk~r~~~~p~~~~~~~~~~~fdgss~g~~~~~~~D~~L~PD~~~~~P  141 (432)
                      ..+++||+|   +|.++++++|+|+|+.| .+|||++++....+.++++++|+|||||+||.++++||++|+||+++++|
T Consensus        10 ~~~~~~~~l---~~~~i~~v~~~~~D~~G-~lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~P   85 (370)
T 3fky_A           10 QILQKYLEL---DQRGRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDP   85 (370)
T ss_dssp             --------------CCCEEEEEEEECSSS-CEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEEEEEECT
T ss_pred             HHHHHHhCc---ccCCeEEEEEEEEcCCC-CeEEEEEECccccchHHhCCccccCCcccccccCCCCCeeEeeeEEEEcC
Confidence            456677777   68999999999999999 69999999988888888889999999999999999999999999999999


Q ss_pred             CCCCCeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhccCccccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCccccc
Q 013989          142 FRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGA  221 (432)
Q Consensus       142 ~~~~~~a~Vlcd~~~~dG~P~~~~pR~~Lk~~l~~l~~~G~~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~  221 (432)
                      |+++++++|+||++++||+|++.|||++|+|++++++  |+++++|+|+|||||+.+ ..+.+||.+++|.++|+|||..
T Consensus        86 w~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~-~~~~~~p~~~~p~~~g~yy~~~  162 (370)
T 3fky_A           86 FRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMY-DDVYGWPKGGYPAPQGPYYCGV  162 (370)
T ss_dssp             TTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTT-SSBTTCCTTSBCSCSSSCTTCC
T ss_pred             CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccC-CCcccCCCCCccCCCCcccccc
Confidence            9997799999999999999999999999999999875  999999999999999987 3477999888999999999988


Q ss_pred             ccChhhHHHHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCC
Q 013989          222 GADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEG  301 (432)
Q Consensus       222 ~~~~~~~~~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~  301 (432)
                      +.+..+.++++++|+++|+++||+|+++|||+|||||||++.|++++++||+++++|++||+||++||+.|||||||+.|
T Consensus       163 ~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~g  242 (370)
T 3fky_A          163 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKG  242 (370)
T ss_dssp             STTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSS
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccCC
Confidence            87776779999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             CCCCceeeeeeccccccCCCchHHHHHHHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeecccC
Q 013989          302 DWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRET  381 (432)
Q Consensus       302 ~~~GsG~H~H~Sl~~~~~~~g~~~~~~~iaGl~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~~  381 (432)
                      +|+|||||+|+|||++++++|++.+++||+||.++|+++|++|+.||||||+|++|||++.+++||++||+|+||||...
T Consensus       243 d~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG~~NRsa~iRIp~~~  322 (370)
T 3fky_A          243 DWNGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSV  322 (370)
T ss_dssp             SSCCCBEEEEEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSEEECHHH
T ss_pred             CCCcccceeeeccccccCCCCHHHHHHHHHHHHHHhHHHHHHHccchhhhcCCCccCCCcccceEecCCCceeEEecCCC
Confidence            57999999999999877678899999999999449999999999999999999999999667999999999999999765


Q ss_pred             CCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCCC
Q 013989          382 EKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT  417 (432)
Q Consensus       382 ~~~~~~r~E~R~pda~aNPYLalAailaagl~G~~~  417 (432)
                      ...+++|||+|+||++|||||++|+||+|||+|+++
T Consensus       323 ~~~~~~riE~R~pda~aNPYLa~Aailaagl~Gi~~  358 (370)
T 3fky_A          323 AKEGYGYFEDRRPASNIDPYLVTGIMCETVCGAIDN  358 (370)
T ss_dssp             HHHTCCCEEECCCBTTCCHHHHHHHHHHHHHCCBTT
T ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHHHHHhcCccc
Confidence            432356999999999999999999999999999964
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Back     alignment and structure
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Back     alignment and structure
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Back     alignment and structure
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Back     alignment and structure
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A* Back     alignment and structure
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Back     alignment and structure
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Back     alignment and structure
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A Back     alignment and structure
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 432
d1f52a2368 d.128.1.1 (A:101-468) Glutamine synthetase, C-term 5e-05
d1f52a1100 d.15.9.1 (A:1-100) Glutamine synthetase, N-termina 0.002
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 368 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 52/260 (20%), Positives = 93/260 (35%), Gaps = 39/260 (15%)

Query: 181 AEVPWFGIEQEYTLLQQNVKW-----------------------PLGWPVGAYPGPQGPY 217
           A+   FG E E+ L   ++++                         G   G  PG +G Y
Sbjct: 21  ADTVLFGPEPEFFLFD-DIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGY 79

Query: 218 YCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDHIWC 276
           +     D    +DI           G+ +   + EV   GQ E     +      D I  
Sbjct: 80  FPVPPVD--SAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQI 137

Query: 277 SRYLLERITEQAGVVLSLDPKPIEGDWNGAG-CHTNYSTK-----SMREEGGYETIKKAI 330
            +Y++  +  + G   +  PKP+ GD      CH + +       S  +  G        
Sbjct: 138 YKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYY 197

Query: 331 LNLSLRHKEHISAYG---EGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKG 387
           +   ++H + I+A       + +RL   +E   + ++S    NR  SIR+      + + 
Sbjct: 198 IGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSAR--NRSASIRIPVVASPKAR- 254

Query: 388 YLEDRRPASNMDPYVVTSLL 407
            +E R P    +PY+  + L
Sbjct: 255 RIEVRFPDPAANPYLCFAAL 274
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
d1f52a2368 Glutamine synthetase, C-terminal domain {Salmonell 100.0
d2bvca2374 Glutamine synthetase, C-terminal domain {Mycobacte 100.0
d1f52a1100 Glutamine synthetase, N-terminal domain {Salmonell 99.47
d2bvca1100 Glutamine synthetase, N-terminal domain {Mycobacte 99.44
d1r8ga_ 368 Carboxylate-amine ligase YbdK {Escherichia coli [T 97.83
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.9e-64  Score=511.14  Aligned_cols=246  Identities=23%  Similarity=0.289  Sum_probs=210.6

Q ss_pred             CCCHHHHHHHHHHhhccCccc--cEEEeeeeEEEeccCC---------------C-------CCCCCCCCCCCCCCCCcc
Q 013989          163 PTNKRHRAAEIFSNSKVSAEV--PWFGIEQEYTLLQQNV---------------K-------WPLGWPVGAYPGPQGPYY  218 (432)
Q Consensus       163 ~~~pR~~Lk~~l~~l~~~G~~--~~~G~E~EF~L~~~~~---------------~-------~~~g~p~~~~p~~~g~yy  218 (432)
                      +.|||++|||+++++++.|+.  +.+|+|+|||||+...               .       ...++..+..+..++.||
T Consensus         1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T d1f52a2           1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF   80 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCceEEEeceEEEEEeccccccCcCCCccccCCccccccCCCcccCCCCCCccccCCcee
Confidence            369999999999999999995  4679999999997420               0       011111223345667788


Q ss_pred             cccccChhhHHHHHHHHHHHHHHcCCceeeecCCCC-CCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeeccc
Q 013989          219 CGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK  297 (432)
Q Consensus       219 ~~~~~~~~~~~~i~~~i~~al~~~GI~ie~~h~E~g-pGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPK  297 (432)
                      +....+.  ..++++++++.|+.+||+|+++|+|++ ||||||++.|.+++++||+++++|++||+||++||+.||||||
T Consensus        81 ~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpK  158 (368)
T d1f52a2          81 PVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPK  158 (368)
T ss_dssp             BCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred             eeeccch--HHHHHHHHHHHHHhhccCeeeeecccccCCceeecCCCCchHHHHHHHHHHHHHHHHHHHHhcceeeEecc
Confidence            8877765  367888888899999999999999999 6999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCceeeeeeccccccC-------CCch-HHHHHHHHHHHHhHHHHhhcccc---cccccCCCCCCCCCCCceee
Q 013989          298 PIEGDWNGAGCHTNYSTKSMRE-------EGGY-ETIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFSW  366 (432)
Q Consensus       298 P~~~~~~GsG~H~H~Sl~~~~~-------~~g~-~~~~~~iaGl~L~H~~al~a~~~---nsYkRL~~~~~ap~~~~~sW  366 (432)
                      |+.+. +|||+|+|+||++...       .+++ ...++||+|| |+|++++++|++   ||||||.|++|||+  +++|
T Consensus       159 P~~~~-~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGl-l~~~~~~~al~~PtvNSYkRl~~~~~aP~--~~~W  234 (368)
T d1f52a2         159 PMFGD-NGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGV-IKHAKAINALANPTTNSYKRLVPGYEAPV--MLAY  234 (368)
T ss_dssp             SSTTS-CCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHH-HHTHHHHHHHHSCSGGGGGTSSSCSSCCC--EEEE
T ss_pred             cCCCC-CCcceeEEEEeccCCCcccccccccccCHHHHHHHHHH-HHhhHHHHHHHCCCchHHhhccCCCcCCc--eeee
Confidence            99995 9999999999997421       2344 3557999999 999999999975   99999999999998  9999


Q ss_pred             ccCCCcceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 013989          367 GVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE  415 (432)
Q Consensus       367 G~~NR~a~IRvp~~~~~~~~~r~E~R~pda~aNPYLalAailaagl~G~  415 (432)
                      |.+||+++||||.... +...|||+|.||++|||||++|++|+|||+|+
T Consensus       235 g~~NR~a~iRi~~~~~-~~~~riE~R~~da~aNPYL~lAa~laagl~Gi  282 (368)
T d1f52a2         235 SARNRSASIRIPVVAS-PKARRIEVRFPDPAANPYLCFAALLMAGLDGI  282 (368)
T ss_dssp             ESSCTTEEEECCCCSC-GGGCCEEECCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             ccCccccceeecccCC-CccceEEecCCCccHHHHHHHHHHHHHhhhhh
Confidence            9999999999996432 24679999999999999999999999999994
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure