Citrus Sinensis ID: 014025

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MDSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRKLQVSVAPDLASKGGQGVSNSSNIKIKGEMDDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQEYDVQAWCMLLNDKVPFRMQWPQYADLQVNGVPVRAINRPGSQLLGANGRDDGPIITPWTKDGINKIVLTGCDARIFCLGVRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLFFS
cccHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHcccccEEEEEEEEcccccccccccccEEEEEccEEEEEcccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEEEEccHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccEEEEcccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccEEEcHHHHHHHHHHHccc
cccHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccEEEcccccccccccEEEEEEEEEEccHHHHHHHHccccEEEEEEEEccccccccccccccEEEEEccEEcccccccccccccccccccccEEEEEEEccccEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccEEEEEEEEEEEccccccEEEEcccccccccEEEEcHHHHHHHHccccccEccccccccccccEEEcHHHHHHHHHHHccc
MDSVASCKEKLAHFRIKELKDVLTQlglskqgkkqDLVDRILAILSDDqvskmwakkspvskeEVAKLVDDTHRKLQVsvapdlaskggqgvsnssnikikgemddyiqsdtkvccpcgssletesmikcedprcpvwqhmscviipekptegnppvpelfYCEIcrlsradpfwvtighplyplkltttniptdgtnparilektfpitradkdllskQEYDVQAWCMLLndkvpfrmqwpqyadlqvngvpvrainrpgsqllgangrddgpiitpwtkdgiNKIVLTGCDARIFCLGVRIVKRRSVQQVLNlipkesegehfEDALTRVCRcvgggnaadnadsdsdLEVVADSIgvnlrcpmsgsrikvagrfkpcvhmgcfDLDVFVELNqrsrkwqcpiclrnysleniiidpyfnritskvlffs
MDSVASCKEKLAHFRIKELKDVLTqlglskqgkkqdlvDRILAILsddqvskmwakkspvskeeVAKLVDDTHRKLQVsvapdlaskggqgvsnssniKIKGEMDDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWVTIGHPlyplkltttniptdgtnparilekTFPITRADKDLLSKQEYDVQAWCMLLNDKVPFRMQWPQYADLQVNGVPVRAINRPgsqllgangrddGPIITPWTKDGINKIVLTGCDARIFCLGVRIVKRRSVQQVLNlipkesegehfeDALTRVCRCVGGGnaadnadsdsdLEVVADSIgvnlrcpmsgsRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSleniiidpyfnritskVLFFS
MDSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRKLQVSVAPDLASKGGQGVSNSSNIKIKGEMDDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQEYDVQAWCMLLNDKVPFRMQWPQYADLQVNGVPVRAINRPGSQLLGANGRDDGPIITPWTKDGINKIVLTGCDARIFCLGVRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVgggnaadnadsdsdLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLFFS
**********LAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVS*****************************************************DDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPT*GNPPVPELFYCEICRLSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQEYDVQAWCMLLNDKVPFRMQWPQYADLQVNGVPVRAINRPGSQLLGANGRDDGPIITPWTKDGINKIVLTGCDARIFCLGVRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAA*******DLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLFF*
*****SCKEKLAHFRIKELKDV******************ILAILS**********************************************************************************************************************ICRLSRADPFWVTIGHPLYPLKLTTTNIPT****PARILEKTFPITRADKDLLSKQEYDVQAWCMLLNDKVPFRMQWPQYADLQVNGVPVRAIN**********GRDDGPIITPWTKDGINKIVLTGCDARIFCLGVRIVKRRSVQQVLNLIP*********DALTRVCRCV************SDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLFF*
MDSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSK**************KLVDDTHRKLQVSVAPDL*********NSSNIKIKGEMDDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQEYDVQAWCMLLNDKVPFRMQWPQYADLQVNGVPVRAINRPGSQLLGANGRDDGPIITPWTKDGINKIVLTGCDARIFCLGVRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLFFS
*DSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRKLQV***********************************VC**C****ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQEYDVQAWCMLLNDKVPFRMQWPQYADLQVNGVPVRAINRPGSQLL*ANGRDDGPIITPWTKDGINKIVLTGCDARIFCLGVRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGG*********SDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLF**
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MDSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRKLQVSVAPDLASKGGQGVSNSSNIKIKGEMDDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQEYDVQAWCMLLNDKVPFRMQWPQYADLQVNGVPVRAINRPGSQLLGANGRDDGPIITPWTKDGINKIVLTGCDARIFCLGVRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLFFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query432 2.2.26 [Sep-21-2011]
Q680Q4 884 E3 SUMO-protein ligase SI yes no 0.988 0.483 0.747 0.0
Q6L4L4 875 E3 SUMO-protein ligase SI yes no 0.976 0.482 0.637 1e-167
Q6ASW7 813 E3 SUMO-protein ligase SI no no 0.979 0.520 0.611 1e-156
Q8CIE2 920 Zinc finger MIZ domain-co yes no 0.451 0.211 0.275 4e-13
Q8NF64 920 Zinc finger MIZ domain-co yes no 0.451 0.211 0.275 8e-13
O94451 727 E3 SUMO-protein ligase pl yes no 0.298 0.177 0.281 3e-12
Q6P1E1 1072 Zinc finger MIZ domain-co no no 0.453 0.182 0.271 1e-11
Q9ULJ6 1067 Zinc finger MIZ domain-co no no 0.453 0.183 0.271 1e-11
O88907 651 E3 SUMO-protein ligase PI no no 0.377 0.250 0.243 4e-10
O75925 651 E3 SUMO-protein ligase PI no no 0.180 0.119 0.333 6e-10
>sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2 Back     alignment and function desciption
 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/428 (74%), Positives = 374/428 (87%), Gaps = 1/428 (0%)

Query: 1   MDSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPV 60
           MD  A+CKEKL++FRIKELKDVLTQLGLSKQGKKQ+LVDRIL +LSD+Q +++ +KK+ V
Sbjct: 1   MDLEANCKEKLSYFRIKELKDVLTQLGLSKQGKKQELVDRILTLLSDEQAARLLSKKNTV 60

Query: 61  SKEEVAKLVDDTHRKLQVSVAPDLASKGGQGVSNSSNIKIKGEMDDYIQSDTKVCCPCGS 120
           +KE VAKLVDDT+RK+QVS A DLASKG Q  S++SN+K+KGE +D  Q + KV C CG+
Sbjct: 61  AKEAVAKLVDDTYRKMQVSGASDLASKG-QVSSDTSNLKVKGEPEDPFQPEIKVRCVCGN 119

Query: 121 SLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWVTIGH 180
           SLET+SMI+CEDPRC VWQH+ CVI+P+KP +GNPP+PE FYCEICRL+RADPFWVT+ H
Sbjct: 120 SLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTRADPFWVTVAH 179

Query: 181 PLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQEYDVQAWCMLLNDKVPFRMQ 240
           PL P++LT T IP DG +  + +E+TF ITRADKDLL+K EYDVQAWCMLLNDKV FRMQ
Sbjct: 180 PLSPVRLTATTIPNDGASTMQSVERTFQITRADKDLLAKPEYDVQAWCMLLNDKVLFRMQ 239

Query: 241 WPQYADLQVNGVPVRAINRPGSQLLGANGRDDGPIITPWTKDGINKIVLTGCDARIFCLG 300
           WPQYADLQVNGVPVRAINRPG QLLG NGRDDGPIIT   +DG+N+I L+G D RIFC G
Sbjct: 240 WPQYADLQVNGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIFCFG 299

Query: 301 VRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGV 360
           VR+VKRR++QQVLNLIP+E +GE FEDAL RV RC+GGG   DNADSDSD+EVVAD  GV
Sbjct: 300 VRLVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFGV 359

Query: 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPY 420
           NLRCPMSGSRIKVAGRF PCVHMGCFDLDVFVELNQRSRKWQCPICL+NYS+E++I+DPY
Sbjct: 360 NLRCPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPY 419

Query: 421 FNRITSKV 428
           FNRITSK+
Sbjct: 420 FNRITSKM 427
E3 SUMO protein ligase involved in regulation processes. Mediates SUMO/ attachment to PHR1, a MYB transcriptional activator controlling the phosphate deficiency responses. Functions as an upstream negative regulator of salicylic acid (SA) accumulation and subsequent SA-mediated systemic acquired resistance (SAR) signaling. Probably not involved in jasmonic acid (JA)-mediated defense response. Participates in abiotic stress-induced sumoylation. Controls heat shock-induced SUMO1 and SUMO2 conjugation and facilitates basal thermotolerance. Involved in freezing tolerance by mediating sumoylation of ICE1, a transcription activator of the cold signaling regulator CBF3/DREB1A. Acts as positive regulator of drought stress tolerance. Acts as floral repressor that promotes FLC expression by repressing FLD activity through sumoylation. Acts as negative regulator of abscisic acid (ABA) signaling through ABI5 sumoylation. Mediates sumoylation of SCE1, GTE3 and GTE5.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q6L4L4|SIZ1_ORYSJ E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp. japonica GN=SIZ1 PE=1 SV=1 Back     alignment and function description
>sp|Q6ASW7|SIZ2_ORYSJ E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp. japonica GN=SIZ2 PE=2 SV=1 Back     alignment and function description
>sp|Q8CIE2|ZMIZ2_MOUSE Zinc finger MIZ domain-containing protein 2 OS=Mus musculus GN=Zmiz2 PE=2 SV=2 Back     alignment and function description
>sp|Q8NF64|ZMIZ2_HUMAN Zinc finger MIZ domain-containing protein 2 OS=Homo sapiens GN=ZMIZ2 PE=1 SV=2 Back     alignment and function description
>sp|O94451|PLI1_SCHPO E3 SUMO-protein ligase pli1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pli1 PE=1 SV=3 Back     alignment and function description
>sp|Q6P1E1|ZMIZ1_MOUSE Zinc finger MIZ domain-containing protein 1 OS=Mus musculus GN=Zmiz1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ULJ6|ZMIZ1_HUMAN Zinc finger MIZ domain-containing protein 1 OS=Homo sapiens GN=ZMIZ1 PE=1 SV=3 Back     alignment and function description
>sp|O88907|PIAS1_MOUSE E3 SUMO-protein ligase PIAS1 OS=Mus musculus GN=Pias1 PE=1 SV=2 Back     alignment and function description
>sp|O75925|PIAS1_HUMAN E3 SUMO-protein ligase PIAS1 OS=Homo sapiens GN=PIAS1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
449459066 869 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.981 0.487 0.799 0.0
255570825 876 sumo ligase, putative [Ricinus communis] 0.983 0.485 0.817 0.0
357472339 882 E3 SUMO-protein ligase SIZ1 [Medicago tr 0.990 0.485 0.771 0.0
225435251 876 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.986 0.486 0.787 0.0
356550169 885 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.983 0.480 0.769 0.0
356550167 880 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.983 0.482 0.769 0.0
356543434 895 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.983 0.474 0.760 0.0
356543432 882 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.983 0.481 0.760 0.0
356539120 879 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.990 0.486 0.783 0.0
297819032 873 predicted protein [Arabidopsis lyrata su 0.988 0.489 0.75 0.0
>gi|449459066|ref|XP_004147267.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Cucumis sativus] gi|449511458|ref|XP_004163961.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/429 (79%), Positives = 392/429 (91%), Gaps = 5/429 (1%)

Query: 1   MDSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPV 60
           MD VA+CK+KLA+FRIKELKD+LTQLGLSKQGKKQDLV RIL ILSD+QVSKMWAKK+ V
Sbjct: 1   MDLVANCKDKLAYFRIKELKDILTQLGLSKQGKKQDLVQRILDILSDEQVSKMWAKKNAV 60

Query: 61  SKEEVAKLVDDTHRKLQVSVAPDLASKGGQGVSNSSNIKIKGEMDDYIQSDTKVCCPCGS 120
            K++VAKLVDDT+RK+QVS   DLA+KG QGVS+SSN+++KGE DD +Q DTKV C CG+
Sbjct: 61  GKDQVAKLVDDTYRKMQVS-GVDLATKG-QGVSDSSNVQVKGETDDSLQLDTKVRCLCGN 118

Query: 121 SLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWVTIGH 180
            L+TESMIKCEDPRC VWQH+SCVI+PEKPTEGNPP PE FYCEICRL+RADPFWV++ H
Sbjct: 119 GLQTESMIKCEDPRCQVWQHISCVIVPEKPTEGNPPYPEHFYCEICRLNRADPFWVSVAH 178

Query: 181 PLYPLKLTTT---NIPTDGTNPARILEKTFPITRADKDLLSKQEYDVQAWCMLLNDKVPF 237
           PL+P+KL TT   NIPTDGTNP + ++++F +TRADKDLLSKQEYDVQAWCMLLNDKVPF
Sbjct: 179 PLFPVKLITTMSTNIPTDGTNPMQSVDRSFQLTRADKDLLSKQEYDVQAWCMLLNDKVPF 238

Query: 238 RMQWPQYADLQVNGVPVRAINRPGSQLLGANGRDDGPIITPWTKDGINKIVLTGCDARIF 297
           RMQWPQYADLQ+NG+ VRAINRPGSQLLGANGRDDGPIIT  TKDG+NKI LTGCDAR F
Sbjct: 239 RMQWPQYADLQINGLAVRAINRPGSQLLGANGRDDGPIITACTKDGMNKIALTGCDARSF 298

Query: 298 CLGVRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADS 357
           CLGVRIVKRR+VQQ+L++IPKES+GE F+DAL R+CRC+GGGN ADNADSDSDLEVVA+ 
Sbjct: 299 CLGVRIVKRRTVQQILSMIPKESDGERFQDALARICRCIGGGNTADNADSDSDLEVVAEF 358

Query: 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIII 417
            GVNLRCPMSGSR+K+AGRFKPC HMGCFDL+VFVELNQRSRKWQCPICL+NY+LEN+II
Sbjct: 359 FGVNLRCPMSGSRMKIAGRFKPCAHMGCFDLEVFVELNQRSRKWQCPICLKNYALENVII 418

Query: 418 DPYFNRITS 426
           DPYFNRITS
Sbjct: 419 DPYFNRITS 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255570825|ref|XP_002526365.1| sumo ligase, putative [Ricinus communis] gi|223534324|gb|EEF36036.1| sumo ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357472339|ref|XP_003606454.1| E3 SUMO-protein ligase SIZ1 [Medicago truncatula] gi|355507509|gb|AES88651.1| E3 SUMO-protein ligase SIZ1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|225435251|ref|XP_002284945.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356550169|ref|XP_003543461.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356550167|ref|XP_003543460.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356543434|ref|XP_003540165.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356543432|ref|XP_003540164.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356539120|ref|XP_003538048.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Glycine max] Back     alignment and taxonomy information
>gi|297819032|ref|XP_002877399.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323237|gb|EFH53658.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
FB|FBgn0003612 640 Su(var)2-10 "Suppressor of var 0.319 0.215 0.26 3.9e-12
ZFIN|ZDB-GENE-080220-27 1068 zmiz1a "zinc finger, MIZ-type 0.446 0.180 0.279 1.5e-11
UNIPROTKB|I3L8P9 943 I3L8P9 "Uncharacterized protei 0.446 0.204 0.279 4.9e-11
UNIPROTKB|I3LDU8 985 I3LDU8 "Uncharacterized protei 0.446 0.195 0.279 5.2e-11
UNIPROTKB|I3LJD1 1021 ZMIZ1 "Uncharacterized protein 0.446 0.189 0.279 5.5e-11
UNIPROTKB|F1MP12 1066 ZMIZ1 "Uncharacterized protein 0.446 0.181 0.279 5.8e-11
UNIPROTKB|Q9ULJ6 1067 ZMIZ1 "Zinc finger MIZ domain- 0.446 0.180 0.279 5.8e-11
UNIPROTKB|E2RGZ0 1072 ZMIZ1 "Uncharacterized protein 0.446 0.180 0.279 5.8e-11
UNIPROTKB|F1S2E4 1072 ZMIZ1 "Uncharacterized protein 0.446 0.180 0.279 5.8e-11
MGI|MGI:106374 920 Zmiz2 "zinc finger, MIZ-type c 0.449 0.210 0.276 7.9e-11
FB|FBgn0003612 Su(var)2-10 "Suppressor of variegation 2-10" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 160 (61.4 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
 Identities = 39/150 (26%), Positives = 69/150 (46%)

Query:   285 NKIVLTGCD--ARIFCLGVRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVXXXXXX 342
             N I +  C    R +CL V +VK+ +  Q+L  +  +++G    D  TR           
Sbjct:   301 NTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRM--KTKGVKPAD-YTR-------GLIK 350

Query:   343 XXXXXXXXLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQ 402
                      E+    + V+L CP+   ++ +  R   C H+ CFD  +++++N+R   W 
Sbjct:   351 EKLTEDADCEIATTMLKVSLNCPLGKMKMLLPCRASTCSHLQCFDASLYLQMNERKPTWN 410

Query:   403 CPICLRNYSLENIIIDPYFNRITSKVLFFS 432
             CP+C +    +N++ID YF  +    L  S
Sbjct:   411 CPVCDKPAIYDNLVIDGYFQEVLGSSLLKS 440
GO:0017151 "DEAD/H-box RNA helicase binding" evidence=NAS
GO:0005654 "nucleoplasm" evidence=IDA
GO:0030261 "chromosome condensation" evidence=IMP
GO:0005652 "nuclear lamina" evidence=IDA
GO:0005700 "polytene chromosome" evidence=IDA
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=IDA;TAS
GO:0051276 "chromosome organization" evidence=IMP;TAS
GO:0035012 "polytene chromosome, telomeric region" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA;TAS
GO:0048749 "compound eye development" evidence=IMP;TAS
GO:0007446 "imaginal disc growth" evidence=TAS
GO:0042176 "regulation of protein catabolic process" evidence=TAS
GO:0046425 "regulation of JAK-STAT cascade" evidence=TAS
GO:0046426 "negative regulation of JAK-STAT cascade" evidence=NAS
GO:0030097 "hemopoiesis" evidence=TAS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0019789 "SUMO ligase activity" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI
GO:0022008 "neurogenesis" evidence=IMP
ZFIN|ZDB-GENE-080220-27 zmiz1a "zinc finger, MIZ-type containing 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3L8P9 I3L8P9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDU8 I3LDU8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LJD1 ZMIZ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MP12 ZMIZ1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9ULJ6 ZMIZ1 "Zinc finger MIZ domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGZ0 ZMIZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2E4 ZMIZ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:106374 Zmiz2 "zinc finger, MIZ-type containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q680Q4SIZ1_ARATH6, ., 3, ., 2, ., -0.74760.98840.4830yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.66.741.1
hypothetical protein (636 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
pfam0289150 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger 2e-17
pfam0203735 pfam02037, SAP, SAP domain 7e-07
smart0051335 smart00513, SAP, Putative DNA-binding (bihelical) 3e-06
pfam0062851 pfam00628, PHD, PHD-finger 4e-06
smart0024947 smart00249, PHD, PHD zinc finger 9e-06
>gnl|CDD|111745 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger Back     alignment and domain information 
 Score = 75.4 bits (186), Expect = 2e-17
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 360 VNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPIC 406
           V+L+CP+S  RI +  R + C H+ CFDL  F+E N+R+  W CP+C
Sbjct: 1   VSLKCPISYLRISIPVRGRFCKHIQCFDLLSFLESNERTPTWNCPVC 47

This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation. Length = 50
>gnl|CDD|202100 pfam02037, SAP, SAP domain Back     alignment and domain information
>gnl|CDD|128789 smart00513, SAP, Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
KOG2169 636 consensus Zn-finger transcription factor [Transcri 100.0
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 99.88
PF14324144 PINIT: PINIT domain; PDB: 3I2D_A. 99.81
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 98.61
PF0203735 SAP: SAP domain; InterPro: IPR003034 The SAP (afte 98.6
smart0051335 SAP Putative DNA-binding (bihelical) motif predict 98.46
KOG1973274 consensus Chromatin remodeling protein, contains P 97.99
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 97.75
KOG2979262 consensus Protein involved in DNA repair [General 97.32
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.3
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.07
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.04
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 96.41
KOG1844 508 consensus PHD Zn-finger proteins [General function 95.97
PF1294935 HeH: HeH/LEM domain; PDB: 2OUT_A. 94.47
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 94.41
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 94.39
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 94.35
COG5627275 MMS21 DNA repair protein MMS21 [DNA replication, r 94.29
COG5222427 Uncharacterized conserved protein, contains RING Z 93.84
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 92.93
KOG4259260 consensus Putative nucleic acid-binding protein Hc 91.13
PF0749843 Rho_N: Rho termination factor, N-terminal domain; 91.03
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 89.08
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 88.18
PF04641260 Rtf2: Rtf2 RING-finger 87.24
PF10208154 Armet: Degradation arginine-rich protein for mis-f 82.83
cd0016245 RING RING-finger (Really Interesting New Gene) dom 81.24
>KOG2169 consensus Zn-finger transcription factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=9.8e-37  Score=328.99  Aligned_cols=355  Identities=19%  Similarity=0.352  Sum_probs=246.4

Q ss_pred             hhcCHHHHHHHH-HHhCCCCCC--ChHHHHHHHHHhcccccccccccCCCCCcHHHHHHHHHHHHHhccc-CCCCCcccC
Q 014025           12 AHFRIKELKDVL-TQLGLSKQG--KKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRKLQV-SVAPDLASK   87 (432)
Q Consensus        12 ~~fRv~ELk~vl-~~lgl~ksG--rK~eL~~Ril~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~~-~~~~~~~~~   87 (432)
                      +++|+.||+.++ .+.|+...|  +|.+|.-|.+.++...+.+            ++..+|.+.|++... .......-.
T Consensus         1 m~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~------------~~q~~i~~~~~~~~~~~~~~~~~~~   68 (636)
T KOG2169|consen    1 MSLRVSSLQVLLSGAIGRSFPGQVNKHKLAPRALTLVGSGCKP------------YLQMVIKELYQRQYPNGQQQPIDLP   68 (636)
T ss_pred             CCcccccccccchhhhccccccccchhhhhhhhhcccccCCch------------hhhhhhhhhhhhhcccccccccccc
Confidence            368999999998 788888888  8899999999999888755            778888899885222 221111010


Q ss_pred             CCCCcCCCCcccccccccccCCCCCccccCCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCccccccee
Q 014025           88 GGQGVSNSSNIKIKGEMDDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR  167 (432)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~q~~~~~rC~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Cr  167 (432)
                      .   ...+.+..+.     .+..               .        |....|..=..+....+.+    +..-+.+..+
T Consensus        69 ~---~~~~~~~~~~-----~~~~---------------~--------~~~~~~~~~~~~~~~~l~g----~~~~~~~~~~  113 (636)
T KOG2169|consen   69 A---VKLHPNVVPP-----FYPL---------------L--------WQLLRHPTQQPVTPSSLLG----PPLPFHPDVK  113 (636)
T ss_pred             c---cccCCcccCc-----cccc---------------h--------hcccccCCCCCCCcccccC----CCCcCCCccc
Confidence            0   0011111100     0000               0        0001111000011111111    0023456677


Q ss_pred             ecccCcchhhccccccceeeeecccCCCCCCCceeeeEEEEeChhhHHhhccC-Ce------eEEEEEeecCCCCccccC
Q 014025          168 LSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQ-EY------DVQAWCMLLNDKVPFRMQ  240 (432)
Q Consensus       168 l~~~dPF~~~i~~ll~p~~l~~~~i~~~g~~~~q~~~~~F~Lt~~~~~~l~~~-~~------~l~v~C~~~~~~~~~~~~  240 (432)
                      + +..|||.++..+.+|+.+..+.    + ..++...+.|.|+++....+... +.      .-.+ |.. ..+.+++.+
T Consensus       114 ~-~~~~~y~~l~~~~~p~~~~~~~----~-~~~~~~~~~f~lt~~~~~~i~~~~~~~~~~k~~~~~-~~~-~~s~p~e~~  185 (636)
T KOG2169|consen  114 L-KKLPFYDVLSELIKPHVLHSSN----S-PSLSESPFLFALTPEQVSGISSRPDVLPGSKSEGSV-CLM-ETSCPQEDH  185 (636)
T ss_pred             c-cCCchheecccccCceeecCcC----C-CCcccccchhhcchhhhhhcccccccccccccccce-eec-cccCccccc
Confidence            7 5699999999999998887642    2 34455678899999998776532 10      0111 433 245678999


Q ss_pred             CCceeeEEECCeeeecc-CCCCCCCCCC-CCCCCCCC-ccc--CcCCc-ccEEEEEEe--ccceEEEEEEEEEecCHHHH
Q 014025          241 WPQYADLQVNGVPVRAI-NRPGSQLLGA-NGRDDGPI-ITP--WTKDG-INKIVLTGC--DARIFCLGVRIVKRRSVQQV  312 (432)
Q Consensus       241 wP~~~~i~vNg~~v~~~-~r~~~~~~g~-~~r~~~~~-IT~--~l~~g-~N~I~i~~~--d~~~y~~~v~lVk~~s~~~l  312 (432)
                      ||.++.++||+..+.+. ..-..++.+. .++...|. ||.  ++... .|.+.+.|.  .++.|.+++|+|+.++.++|
T Consensus       186 ~p~~~~~~vn~~~~~l~~~~~~~n~~~~~~~~~~~P~n~t~~~~~~~~~~~~~~~~~~~~~~~~ysl~~~~v~~~t~~~l  265 (636)
T KOG2169|consen  186 FPPNVQVKVNNSPCQLPFGYMPNNKHGLEPKRPSRPGNITSLSRLSVTTPNQITVLWTAQGGKSYSLSVYFVEGLTSKDL  265 (636)
T ss_pred             cCceeEEEecCCcceeeccccCCCCcccccCCCCCCCcCcccccccccccccceEEEEeccCcccceEEEEecccCHHHH
Confidence            99999999999998875 2112222222 25655666 999  44443 377777664  48899999999999999999


Q ss_pred             HhhcccCCC-CCCHHHHHHHHHHHhCCCCCCCCCCCCCCcceEeeceeeeecCCCccccccccccccCcCccccccHHHH
Q 014025          313 LNLIPKESE-GEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVF  391 (432)
Q Consensus       313 l~~I~~~~~-~~~~e~~~~~ik~~l~~~~~~~~~d~D~D~ev~~~~~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~f  391 (432)
                      +++++...+ ...++.+.+.|++.+.         .|+|.||+++++.|||.|||+++||++|+|+..|+|+|||||.+|
T Consensus       266 lq~~~~~~~~~~~~~~s~~~~~~~l~---------~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~  336 (636)
T KOG2169|consen  266 LQRLKQNGKINRNLSQSDALIKKKLT---------AGPDSEIATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSY  336 (636)
T ss_pred             HHHHhccCCccCchhHhHHHhhcccc---------cCCcccceeccceeEecCCcccceeecCCcccccccceecchhhh
Confidence            999987542 2334778888876543         234557999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhhc
Q 014025          392 VELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLF  430 (432)
Q Consensus       392 L~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~~  430 (432)
                      |+||+++++|+||||++.+.+++|+||+||.+||..+..
T Consensus       337 lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~~  375 (636)
T KOG2169|consen  337 LQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQA  375 (636)
T ss_pred             HHhccCCCeeeCccCCccccccchhhhHHHHHHHhhccC
Confidence            999999999999999999999999999999999988754

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF14324 PINIT: PINIT domain; PDB: 3I2D_A Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis [] Back     alignment and domain information
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG2979 consensus Protein involved in DNA repair [General function prediction only] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>PF10208 Armet: Degradation arginine-rich protein for mis-folding; InterPro: IPR019345 This entry represents Armet proteins (aka mesencephalic astrocyte-derived neurotrophic factor or arginine-rich protein) Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
2rno_A110 Solution Structure Of The N-Terminal Sap Domain Of 1e-26
1wew_A78 Solution Structure Of Phd Domain In Dna-Binding Fam 3e-21
2rsd_A68 Solution Structure Of The Plant Homeodomain (Phd) O 3e-16
4fo9_A360 Crystal Structure Of The E3 Sumo Ligase Pias2 Lengt 9e-10
3i2d_A371 Crystal Structure Of S. Cerevisiae Sumo E3 Ligase S 1e-07
>pdb|2RNO|A Chain A, Solution Structure Of The N-Terminal Sap Domain Of Sumo E3 Ligases From Oryza Sativa Length = 110 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 76/92 (82%), Gaps = 2/92 (2%)
Query: 2  DSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKM--WAKKSP 59
          D V+SCK+KLA+FRIKELKD+L QLGL KQGKKQDL+DR+LA+L+D+Q  +   W +K+ 
Sbjct: 8  DLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNS 67
Query: 60 VSKEEVAKLVDDTHRKLQVSVAPDLASKGGQG 91
          ++KE VAK+VDDT+RK+Q+  APDLA++   G
Sbjct: 68 LTKEAVAKIVDDTYRKMQIQCAPDLATRSHSG 99
>pdb|1WEW|A Chain A, Solution Structure Of Phd Domain In Dna-Binding Family Protein Aam98074 Length = 78 Back     alignment and structure
>pdb|2RSD|A Chain A, Solution Structure Of The Plant Homeodomain (Phd) Of The E3 Sumo Ligase Siz1 From Rice Length = 68 Back     alignment and structure
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2 Length = 360 Back     alignment and structure
>pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1 Length = 371 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 5e-49
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 2e-45
2rno_A110 Putative DNA-binding protein; SUMO ligase, sumoyla 1e-38
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 4e-23
1wew_A78 DNA-binding family protein; structural genomics, P 7e-23
3o70_A68 PHD finger protein 13; PHF13, structural genomics 2e-12
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 3e-12
1wem_A76 Death associated transcription factor 1; structura 6e-11
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 5e-10
1wee_A72 PHD finger family protein; structural genomics, PH 9e-09
1weu_A91 Inhibitor of growth family, member 4; structural g 2e-08
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 9e-08
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 1e-07
1jjr_A151 KU70, thyroid autoantigen; DNA repair protein, pro 2e-07
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 3e-07
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 3e-07
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 7e-07
2k16_A75 Transcription initiation factor TFIID subunit 3; p 2e-06
1x4i_A70 Inhibitor of growth protein 3; structural genomics 2e-06
1v66_A65 Protein inhibitor of activated STAT protein 1; fou 3e-06
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 1e-05
1we9_A64 PHD finger family protein; structural genomics, PH 3e-05
2rnn_A114 E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind 5e-05
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 2e-04
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 7e-04
1jey_A609 KU70; double-strand DNA break repair, non-homologo 8e-04
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371 Back     alignment and structure
 Score =  170 bits (430), Expect = 5e-49
 Identities = 54/257 (21%), Positives = 110/257 (42%), Gaps = 21/257 (8%)

Query: 181 PLYPLK--LTTTNIPTDGTNPARILEKTFPITRADKDLLSK--QEYDVQAWCML---LND 233
           P Y ++  +    +  + T    +    F +++AD +LLS    ++ +  +  +   L  
Sbjct: 72  PFYKIQRLIPELVMNVEVTGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGS 131

Query: 234 KVPFRMQWPQYADLQVNGVPVRAINRPGSQLLG-ANGRDDGPIITPWTKDGINKIVLT-G 291
           +    +Q+P   +L+ N V ++   R      G A   D  P + P+T    N + L   
Sbjct: 132 RGNEPIQFPFPNELRCNNVQIKDNIRGFKSKPGTAKPADLTPHLKPYT--QQNNVELIYA 189

Query: 292 CDARIFCLGVRIVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDL 351
              + + L   IV+  + +Q+L  + +  +    +  L  + +             D ++
Sbjct: 190 FTTKEYKLFGYIVEMITPEQLLEKVLQHPK-IIKQATLLYLKK---------TLREDEEM 239

Query: 352 EVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYS 411
            +   S  ++L+CP+S +R+K   +   C H+ CFD   F+    +   WQCP+C  + +
Sbjct: 240 GLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299

Query: 412 LENIIIDPYFNRITSKV 428
           LEN+ I  + + I    
Sbjct: 300 LENLAISEFVDDILQNC 316
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Length = 360 Back     alignment and structure
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Length = 110 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1 Length = 65 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae} Length = 114 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B Length = 609 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 100.0
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 100.0
2rno_A110 Putative DNA-binding protein; SUMO ligase, sumoyla 99.96
1v66_A65 Protein inhibitor of activated STAT protein 1; fou 99.74
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 99.37
1wew_A78 DNA-binding family protein; structural genomics, P 99.2
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 98.94
2rnn_A114 E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind 98.93
3o70_A68 PHD finger protein 13; PHF13, structural genomics 98.65
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 98.63
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 98.6
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 98.43
1wee_A72 PHD finger family protein; structural genomics, PH 98.38
2do1_A55 Nuclear protein HCC-1; SAP domain, structural geno 98.36
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 98.33
1zrj_A50 E1B-55KDA-associated protein 5 isoform C; SAP doma 98.28
1h1j_S51 THO1 protein; SAP domain, DNA binding; NMR {Saccha 98.24
1we9_A64 PHD finger family protein; structural genomics, PH 98.23
1wem_A76 Death associated transcription factor 1; structura 98.22
2kvu_A75 MKL/myocardin-like protein 1; SAP motif, DNA/RNA b 98.19
1weu_A91 Inhibitor of growth family, member 4; structural g 98.15
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 97.99
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 97.98
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 97.97
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 97.85
1x4i_A70 Inhibitor of growth protein 3; structural genomics 97.84
1jjr_A151 KU70, thyroid autoantigen; DNA repair protein, pro 97.83
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 97.8
2k16_A75 Transcription initiation factor TFIID subunit 3; p 97.7
3kv5_D 488 JMJC domain-containing histone demethylation prote 97.66
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 97.59
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 97.56
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 97.44
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 97.33
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 97.23
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 97.15
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 96.73
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 96.73
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 96.68
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 96.67
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 96.44
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 96.36
2f42_A179 STIP1 homology and U-box containing protein 1; cha 96.21
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 96.2
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 96.16
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 96.16
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 96.15
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 96.08
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 95.95
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 95.93
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 95.83
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 95.77
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 95.6
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 95.51
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 95.51
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 95.47
2jx3_A131 Protein DEK; alpha helix, SAF/SAP motif, DNA bindi 95.46
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 95.22
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 95.11
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 95.08
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 95.07
1z6u_A150 NP95-like ring finger protein isoform B; structura 95.01
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 94.92
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 94.73
2ecw_A85 Tripartite motif-containing protein 30; metal bind 94.42
2yt5_A66 Metal-response element-binding transcription facto 94.18
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 94.09
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 93.91
2ysl_A73 Tripartite motif-containing protein 31; ring-type 93.86
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 93.74
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 93.47
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 93.43
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 93.42
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 93.35
3rsn_A177 SET1/ASH2 histone methyltransferase complex subun; 93.34
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 93.12
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 93.11
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 92.79
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 92.62
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 92.52
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 92.34
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 92.08
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 91.86
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 91.77
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 91.56
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 91.05
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 90.41
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 90.26
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 89.45
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 89.35
2ect_A78 Ring finger protein 126; metal binding protein, st 89.32
2do5_A58 Splicing factor 3B subunit 2; SAP domain, structur 89.21
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 89.16
1kcf_A258 Hypothetical 30.2 KD protein C25G10.02 in chromoso 88.78
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 88.34
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 87.92
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 87.81
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 87.6
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 87.2
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 86.43
2ecm_A55 Ring finger and CHY zinc finger domain- containing 86.25
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 85.86
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 84.92
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 84.26
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 84.25
2ysj_A63 Tripartite motif-containing protein 31; ring-type 83.83
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 83.16
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 83.03
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 82.97
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 82.54
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 80.94
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Back     alignment and structure
Probab=100.00  E-value=4.5e-53  Score=421.37  Aligned_cols=251  Identities=20%  Similarity=0.392  Sum_probs=200.3

Q ss_pred             cccceeecccCcchhhccccccceeeeecccCCCCCCCceeeeEEEEeChhhHHhhccC---------CeeEEE---EEe
Q 014025          162 YCEICRLSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQ---------EYDVQA---WCM  229 (432)
Q Consensus       162 ~C~~Crl~~~dPF~~~i~~ll~p~~l~~~~i~~~g~~~~q~~~~~F~Lt~~~~~~l~~~---------~~~l~v---~C~  229 (432)
                      +.|..+| +.+|||+++++|++|+.|.++     ++..+|...+.|.||++|...+...         +|++||   +|.
T Consensus        14 ~~~~~~~-k~lPFy~v~~~l~~Pt~L~~~-----~~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vqvqlRfC~   87 (360)
T 4fo9_A           14 LYFQGQL-KNLPFYDVLDVLIKPTSLVQS-----SIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCL   87 (360)
T ss_dssp             ---CCCB-CCCTTEEEEEEEEEEEECCCC-----SSCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEEEEEEEEE
T ss_pred             cCCCcee-cCCCchHhHhhhcCceecccc-----cCcccccceeEEEcCHHHHHHHhhccccccccccceeEEEEEEEEE
Confidence            4566788 558999999999999999764     3566888999999999999888632         355555   475


Q ss_pred             ecCCCCccccCCCceeeEEECCeeeeccCCCCCCCCCCC-CCCCCCC-cccCcCCc---ccEEEEEEe-c-cceEEEEEE
Q 014025          230 LLNDKVPFRMQWPQYADLQVNGVPVRAINRPGSQLLGAN-GRDDGPI-ITPWTKDG---INKIVLTGC-D-ARIFCLGVR  302 (432)
Q Consensus       230 ~~~~~~~~~~~wP~~~~i~vNg~~v~~~~r~~~~~~g~~-~r~~~~~-IT~~l~~g---~N~I~i~~~-d-~~~y~~~v~  302 (432)
                      . ++++++++.||.+++|+|||+.++.++.-+.++.|.. +|...|+ ||++++.|   .|+|+|+|+ + ++.|+++||
T Consensus        88 ~-~~~~~q~~~fP~~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~~y~l~V~  166 (360)
T 4fo9_A           88 A-ETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVY  166 (360)
T ss_dssp             C--C-CCBCCBCCTTCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTBCEEEEEE
T ss_pred             c-cCCCcccccCCCceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCceEEEEEE
Confidence            4 5677899999999999999999997542223344433 4444444 99999987   599999997 3 689999999


Q ss_pred             EEEecCHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCCcceEeeceeeeecCCCccccccccccccCcCc
Q 014025          303 IVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVH  382 (432)
Q Consensus       303 lVk~~s~~~ll~~I~~~~~~~~~e~~~~~ik~~l~~~~~~~~~d~D~D~ev~~~~~~isL~CPls~~ri~~P~Rg~~C~H  382 (432)
                      +|+++|+++|+++|+++ +..+.+++++.|+++++.         |+|+||+++++.|||+||||++||++||||..|.|
T Consensus       167 lV~~~s~~~Llq~l~~k-~~~~~e~t~~~Ik~~l~~---------d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg~~C~H  236 (360)
T 4fo9_A          167 LVRQLTSAMLLQRLKMK-GIRNPDHSRALIKEKLTA---------DPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTH  236 (360)
T ss_dssp             EEEECCHHHHHHHHHTC--CBCHHHHHHHHHHHHC------------------CCEEEESBCTTTCSBCSSEEEETTCCC
T ss_pred             EEEeCCHHHHHHHHHhc-CCCCHHHHHHHHHHHhcc---------CCccceeeeeeEEeeeCCCccceeccCCcCCCCCC
Confidence            99999999999999874 357789999999998842         23446888999999999999999999999999999


Q ss_pred             cccccHHHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhh
Q 014025          383 MGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVL  429 (432)
Q Consensus       383 lQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~  429 (432)
                      +|||||++||+||++.++|+||||++.+++++|+||+||++||+.+.
T Consensus       237 lqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~~~  283 (360)
T 4fo9_A          237 LQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILNDCS  283 (360)
T ss_dssp             CCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTTCS
T ss_pred             CccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999998753
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Back     alignment and structure
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 432
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 5e-18
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 1e-11
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 8e-08
d1jeqa151 a.140.2.1 (A:559-609) DNA binding C-terminal domai 8e-08
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 1e-07
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 5e-06
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 8e-06
d1v66a_65 a.140.2.1 (A:) p53 binding domain of protein inhib 3e-05
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 4e-05
d1zrja137 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucle 2e-04
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 2e-04
d1h1js_44 a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Bak 6e-04
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 8e-04
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 0.004
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.9 bits (186), Expect = 5e-18
 Identities = 44/66 (66%), Positives = 55/66 (83%)

Query: 105 DDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCE 164
           +D  Q + KV C CG+SLET+SMI+CEDPRC VWQH+ CVI+P+KP +GNPP+PE FYCE
Sbjct: 8   EDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67

Query: 165 ICRLSR 170
           ICRL+ 
Sbjct: 68  ICRLTS 73
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 37 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 44 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
d1v66a_65 p53 binding domain of protein inhibitor of activat 99.77
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 98.78
d1jeqa151 DNA binding C-terminal domain of ku70 {Human (Homo 98.74
d1zrja137 Heterogeneous nuclear ribonucleoprotein U-like pro 98.47
d1h1js_44 S/mar DNA-binding protein Tho1 {Baker's yeast (Sac 98.23
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 98.22
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.06
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.93
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.93
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.85
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.6
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.58
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.36
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 97.32
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 97.06
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 97.01
d2do1a142 Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId 97.01
d1kcfa136 Mitochondrial resolvase ydc2 N-terminal domain {Fi 96.78
d2c2la280 STIP1 homology and U box-containing protein 1, STU 96.75
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 96.01
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 95.99
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 95.87
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 94.68
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 94.1
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 91.8
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 87.83
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 86.68
d1a62a147 Rho termination factor, N-terminal domain {Escheri 86.43
d1y02a144 Rififylin (FYVE-RING finger protein Sakura) {Human 85.48
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 83.07
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.5e-19  Score=131.46  Aligned_cols=65  Identities=25%  Similarity=0.374  Sum_probs=60.0

Q ss_pred             CccHHHHHHHHhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccccccccccCCCCCcHHHHHHHHHHHHHhcc
Q 014025            1 MDSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRKLQ   77 (432)
Q Consensus         1 ~~~~~~~~~~l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~   77 (432)
                      |+.+.+.++||++|||+|||.+|+++|++|||||+||++|++.||+..+.+            ++...|.|+|+++.
T Consensus         1 mad~~e~~~Mv~sfRVsELQ~LLg~~gr~KsGrK~eL~~RaL~LL~~~~~~------------~v~~kIrelY~~R~   65 (65)
T d1v66a_           1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSP------------AVQMKIKELYRRRF   65 (65)
T ss_dssp             CCCTTHHHHHHTTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCCH------------HHHHHHHHHHHHTC
T ss_pred             CchHHHHHHHHHHHhHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHccC
Confidence            889999999999999999999999999999999999999999999987654            67777999999863
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure