Citrus Sinensis ID: 014027

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
cccccEEEEEccHHHHHHHHHHccccccEEEEEEEEcccccccccEEEEccccEEEEEEccccEEEEEccccccccccccccEEEEEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccEEEccEEEcccccccEEEEEEccccEEEEcccccEEEEEcccccccccccccccccEEccccccccccEEEEEcccccEEEEEEcccccEEEEEEccccccccccccccEEEEEEEcccccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEEcEEccccccccEEEEEEcccEEEEEEccccEEEEcccccccccccccccccccccccccccEEEEccccccccEEEEEEccccccccEEEEEEccccEEEEEcccccccccccccccccccccEEEEcccc
ccccEEEEEccEEcccccEEEEccccccccccccccHHHHccccEEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccccEEHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHHcccEEEEEEEcccEEEEEEEcccccEEEEEccccccccccccccccccccEEHHHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccccccccHHHHHHHcccEEEEEEEccccccccEEEEEEcccEEEEEccccccccccccccccccccccEEEEcccc
mcqkraifkpmtEAERQDLKQKCGGSWKLVLRFLLAGEACcrrensqaiagpghsiavTSKGvvysfgsnssgqlghgtteeewrprpirslQGIRIIQAAAGAGRTmlisdagqvyafgkdsfgeaeygvqgtklvtspqlVESLKNIFVVQAAIGNFFTAVLSregrvytfswgndarlghhtepndvephpllgtlenipvVQIAAGYCYLLALacqpsgmavysvgcglggklghgsrtdekhprLIEQFQLLNLQPVVVAAGAWHAAVvgqdgrvctwgwgrygclghgneecesVPKVVQALNDVKAIhvatgdyttfvvsedgdvysfgcgesaslghnaiadgqgnrhanvltPQLVTSLKQVNERVVQISLTNSIYWNAHTFaltesgklyafgagdkgqlGIELVNnqtergnpervdidls
mcqkraifkpmteaerqdlkqkcGGSWKLVLRFLLAGEACCRRENsqaiagpghsiAVTSKGVVYSFGsnssgqlghgtteeewrprpIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELvnnqtergnpervdidls
MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLqgiriiqaaagagrTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIaagycyllalacQPSGMAVYSVgcglggklghgSRTDEKHPRLIEQFQLLNLQPvvvaagawhaavvGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
*********************KCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFG*******************PIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGS****KHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELV*****************
******IFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSN**************RPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDK*QLG****NNQTERGNPERV*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query432 2.2.26 [Sep-21-2011]
Q4U2R1 4836 E3 ubiquitin-protein liga yes no 0.761 0.068 0.295 2e-30
O95714 4834 E3 ubiquitin-protein liga yes no 0.761 0.068 0.295 2e-30
Q9FN03440 Ultraviolet-B receptor UV no no 0.787 0.772 0.302 4e-30
Q15751 4861 Probable E3 ubiquitin-pro no no 0.807 0.071 0.302 1e-28
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.650 0.265 0.333 2e-28
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.650 0.265 0.33 3e-28
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.650 0.265 0.33 7e-28
Q15034 1050 Probable E3 ubiquitin-pro no no 0.719 0.296 0.317 2e-27
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.754 0.066 0.297 4e-27
Q8IVU3 1022 Probable E3 ubiquitin-pro no no 0.659 0.278 0.3 2e-22
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function desciption
 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 172/352 (48%), Gaps = 23/352 (6%)

Query: 62   GVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGK 121
            G +Y +G N  GQLG     +   P P  +L  +R +Q   G      ++  G++YA G 
Sbjct: 3954 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4013

Query: 122  DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDA 179
             +      G+ GT+ V++P L+ES++++F+ + A+  G      LS EG VY++    D 
Sbjct: 4014 GA--GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDG 4071

Query: 180  RLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGH 239
            +LGH        P  ++ +L  I VV +AAG  +    AC  +   +Y+ G G  G+LGH
Sbjct: 4072 KLGHGNRSPCDRPR-VIESLRGIEVVDVAAGGAHS---ACVTAAGDLYTWGKGRYGRLGH 4127

Query: 240  GSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECE 299
                D+  P+L+E  Q   +  +   +G      +  D  V +WG G YG LG G  +  
Sbjct: 4128 SDSEDQLKPKLVEALQGHRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGC 4187

Query: 300  SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANV 359
             VP  + +L  +  + V  G   +  +++ G VY++G G+   LGH +          +V
Sbjct: 4188 KVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--------DDHV 4239

Query: 360  LTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLG 411
              P+ V  L+   ++V+ I+ T S+    H    TE G++Y +G  D+GQLG
Sbjct: 4240 RRPRQVQGLQ--GKKVIAIA-TGSL----HCVCCTEDGEVYTWGDNDEGQLG 4284
E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q8IVU3|HERC6_HUMAN Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
224135099 538 predicted protein [Populus trichocarpa] 0.997 0.801 0.911 0.0
255547958 537 RCC1 and BTB domain-containing protein, 0.997 0.802 0.917 0.0
225424560 534 PREDICTED: probable E3 ubiquitin-protein 1.0 0.808 0.895 0.0
359473138526 PREDICTED: probable E3 ubiquitin-protein 1.0 0.821 0.895 0.0
356567464 535 PREDICTED: probable E3 ubiquitin-protein 0.997 0.805 0.895 0.0
357463175 535 RCC1 domain-containing protein [Medicago 0.997 0.805 0.881 0.0
357463177432 RCC1 domain-containing protein [Medicago 0.997 0.997 0.881 0.0
147784312 541 hypothetical protein VITISV_008041 [Viti 0.986 0.787 0.896 0.0
356540207530 PREDICTED: probable E3 ubiquitin-protein 0.986 0.803 0.875 0.0
77554672439 regulator of chromosome condensation, pu 0.997 0.981 0.840 0.0
>gi|224135099|ref|XP_002321983.1| predicted protein [Populus trichocarpa] gi|222868979|gb|EEF06110.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/431 (91%), Positives = 412/431 (95%)

Query: 1   MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTS 60
           MCQKRAIFKPMT  ERQDLKQ+CGGSWKLVLRFLLAGEACCRRE SQAIAGPGHSIAVTS
Sbjct: 107 MCQKRAIFKPMTPEERQDLKQRCGGSWKLVLRFLLAGEACCRRERSQAIAGPGHSIAVTS 166

Query: 61  KGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFG 120
            GV YSFGSNSSGQLGHGTTEEEWRPR IRSLQGIRIIQAAAG GRTMLISDAG+VYAFG
Sbjct: 167 NGVAYSFGSNSSGQLGHGTTEEEWRPRQIRSLQGIRIIQAAAGPGRTMLISDAGEVYAFG 226

Query: 121 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDAR 180
           KDSFGEAEYGVQGTK VT+PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGND +
Sbjct: 227 KDSFGEAEYGVQGTKTVTTPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDGK 286

Query: 181 LGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHG 240
           LGH TEPNDV PHPLLG LENIPVVQIAAGYCYLLALACQPSGM+VYSVGCGLGGKLGHG
Sbjct: 287 LGHQTEPNDVVPHPLLGALENIPVVQIAAGYCYLLALACQPSGMSVYSVGCGLGGKLGHG 346

Query: 241 SRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 300
           SRTDEK+PRLIEQFQLLNLQP+VVAAGAWHAAVVG+DGRVCTWGWGRYGCLGHGNEECES
Sbjct: 347 SRTDEKYPRLIEQFQLLNLQPMVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECES 406

Query: 301 VPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVL 360
           VPKVV AL+ VKA+HVATGDYTTFVVS+DGDVYSFGCGESASLGHN   DGQGNRH NVL
Sbjct: 407 VPKVVDALSKVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNGDGDGQGNRHTNVL 466

Query: 361 TPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTE 420
           +P+LVTSLK+V ERVVQISLTNS+YWNAHTFALTESGKL+AFGAGDKGQLG+ELVNNQTE
Sbjct: 467 SPELVTSLKEVKERVVQISLTNSVYWNAHTFALTESGKLFAFGAGDKGQLGMELVNNQTE 526

Query: 421 RGNPERVDIDL 431
           RGNPE+VD+DL
Sbjct: 527 RGNPEQVDVDL 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255547958|ref|XP_002515036.1| RCC1 and BTB domain-containing protein, putative [Ricinus communis] gi|223546087|gb|EEF47590.1| RCC1 and BTB domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225424560|ref|XP_002285332.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 isoform 1 [Vitis vinifera] gi|296081404|emb|CBI16837.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473138|ref|XP_003631252.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356567464|ref|XP_003551939.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|357463175|ref|XP_003601869.1| RCC1 domain-containing protein [Medicago truncatula] gi|355490917|gb|AES72120.1| RCC1 domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357463177|ref|XP_003601870.1| RCC1 domain-containing protein [Medicago truncatula] gi|355490918|gb|AES72121.1| RCC1 domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|147784312|emb|CAN77314.1| hypothetical protein VITISV_008041 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356540207|ref|XP_003538581.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|77554672|gb|ABA97468.1| regulator of chromosome condensation, putative, expressed [Oryza sativa Japonica Group] gi|77554673|gb|ABA97469.1| regulator of chromosome condensation, putative, expressed [Oryza sativa Japonica Group] gi|108862485|gb|ABG21962.1| regulator of chromosome condensation, putative, expressed [Oryza sativa Japonica Group] gi|108862486|gb|ABG21963.1| regulator of chromosome condensation, putative, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2092190532 AT3G26100 [Arabidopsis thalian 1.0 0.812 0.729 3.6e-169
TAIR|locus:2090136488 AT3G15430 "AT3G15430" [Arabido 0.902 0.799 0.296 1.5e-33
RGD|1307989 3607 Herc2 "HECT and RLD domain con 0.775 0.092 0.261 9e-25
UNIPROTKB|F1M560 3643 Herc2 "Protein Herc2" [Rattus 0.775 0.091 0.261 9.1e-25
UNIPROTKB|O95714 4834 HERC2 "E3 ubiquitin-protein li 0.775 0.069 0.261 9.7e-25
UNIPROTKB|E2RDC2 4837 HERC2 "Uncharacterized protein 0.775 0.069 0.261 9.7e-25
UNIPROTKB|D4ACN3 4779 Herc2 "Protein Herc2" [Rattus 0.775 0.070 0.261 1.2e-24
MGI|MGI:103234 4836 Herc2 "hect (homologous to the 0.775 0.069 0.261 1.2e-24
TAIR|locus:2146142396 AT5G16040 "AT5G16040" [Arabido 0.284 0.310 0.338 1.3e-24
ZFIN|ZDB-GENE-070718-6 4832 herc2 "hect domain and RLD 2" 0.775 0.069 0.261 1.6e-24
TAIR|locus:2092190 AT3G26100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1645 (584.1 bits), Expect = 3.6e-169, P = 3.6e-169
 Identities = 315/432 (72%), Positives = 348/432 (80%)

Query:     1 MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTS 60
             MC KR IFKPM E ERQ++K++CGGSWKLVLRFLLAGEACCRRE SQA+AGPGHS+AVTS
Sbjct:   101 MCNKRVIFKPMNEEERQEMKRRCGGSWKLVLRFLLAGEACCRREKSQAVAGPGHSVAVTS 160

Query:    61 KGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFG 120
             KG VY+FG N+SGQLGHG TE+E R +P+RSL              TMLISD G+VYA G
Sbjct:   161 KGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISDDGKVYACG 220

Query:   121 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDAR 180
             K+SFGEAEYG QGTK VT+PQLV SLKNIFVVQAAIGN+FTAVLSREG+VYTFSWGND R
Sbjct:   221 KESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGNDGR 280

Query:   181 LGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXX 240
             LGH TE  DVEP PLLG LEN+PVVQI            QP+GM+VYSV           
Sbjct:   281 LGHQTEAADVEPRPLLGPLENVPVVQIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHG 340

Query:   241 SRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECES 300
             SRTDEK+PR+IEQFQ+LNLQP             GQDGRVCTWGWGRYGCLGHGNEECES
Sbjct:   341 SRTDEKYPRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 400

Query:   301 VPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVL 360
             VPKVV+ L+ VKA+HVATGDYTTFVVS+DGDVYSFGCGESASLGH+   D QGNRHANVL
Sbjct:   401 VPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVL 460

Query:   361 TPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTE 420
             +P +VTSLKQVNER+VQISLTNSIYWNAHTFALTESGKL+AFGAGD+GQLG EL  NQ E
Sbjct:   461 SPTVVTSLKQVNERMVQISLTNSIYWNAHTFALTESGKLFAFGAGDQGQLGTELGKNQKE 520

Query:   421 RGNPERVDIDLS 432
             R  PE+VDIDLS
Sbjct:   521 RCVPEKVDIDLS 532
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2090136 AT3G15430 "AT3G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M560 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDC2 HERC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:103234 Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2146142 AT5G16040 "AT5G16040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XV.286.1
hypothetical protein (431 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.75940001
hypothetical protein (143 aa)
  •     0.494
eugene3.01650001
annotation not avaliable (143 aa)
  •     0.494
estExt_Genewise1_v1.C_LG_X2024
hypothetical protein (203 aa)
  •     0.485

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 7e-30
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-24
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 9e-20
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-14
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 6e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 8e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.001
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.002
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  120 bits (302), Expect = 7e-30
 Identities = 98/398 (24%), Positives = 165/398 (41%), Gaps = 70/398 (17%)

Query: 54  HSIAVTSKGVVYSFGSNSSGQLGHGTTEE-EWRPR--PIRSLQGIRIIQAAAGAGRTMLI 110
           H+  +     VYS+GSN   +LG G  E    RP+  P   +    II+ A G   ++ +
Sbjct: 60  HTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGL 119

Query: 111 SDAGQVYAFGKDSFGEAEYGVQGTK--------------LVTSPQLVE----SLKNIFVV 152
              G +Y++G +  G     +                  L ++P  V     +  ++ VV
Sbjct: 120 DHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVV 179

Query: 153 QAAIGNFFTAVLSREGRVYTFSWG----NDARLGHHTEPND--VEPHPLLGTLENIPVVQ 206
           + A G   + +L+ +GRVY  SWG     +   G +       ++  PL    + I  VQ
Sbjct: 180 KLACGWEISVILTADGRVY--SWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAI--VQ 235

Query: 207 IAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL--LNLQPVV- 263
           +AAG  +L+AL    +   VY  G    G+LG             E+ +L  L   P   
Sbjct: 236 LAAGADHLIALT---NEGKVYGWGSNQKGQLG---------RPTSERLKLVVLVGDPFAI 283

Query: 264 -----VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECE----SVPKVVQALNDVKAI 314
                VA G  H+  + +DG +  WG   +G LG G++       + P   Q L+ V   
Sbjct: 284 RNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTIC 343

Query: 315 HVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNER 374
            ++ G+  + ++ +DG +Y+FG G+   LG              V TP  ++       +
Sbjct: 344 SISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITID------VSTPTKLSVAI----K 393

Query: 375 VVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGI 412
           + Q++         H  A T+ G +Y++G G+ G LG 
Sbjct: 394 LEQVACGT-----HHNIARTDDGSVYSWGWGEHGNLGN 426

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.94
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.92
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.31
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.25
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.14
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.04
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.0
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.96
KOG3669705 consensus Uncharacterized conserved protein, conta 95.93
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 95.61
KOG0315311 consensus G-protein beta subunit-like protein (con 95.36
KOG0646 476 consensus WD40 repeat protein [General function pr 94.24
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.07
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 90.48
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 89.05
KOG0315311 consensus G-protein beta subunit-like protein (con 88.38
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 87.61
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 85.24
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 85.12
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 82.86
KOG1408 1080 consensus WD40 repeat protein [Function unknown] 81.53
KOG0293519 consensus WD40 repeat-containing protein [Function 81.33
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 80.61
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 80.53
KOG0646476 consensus WD40 repeat protein [General function pr 80.4
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=9.7e-53  Score=392.42  Aligned_cols=355  Identities=27%  Similarity=0.417  Sum_probs=291.6

Q ss_pred             CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCc-ccccccCcC--CCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCCCc
Q 014027           51 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEE-WRPRPIRSL--QGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEA  127 (432)
Q Consensus        51 G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~-~~p~~i~~~--~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gql  127 (432)
                      -..|...++.-..||+||+|...|||.++.+.. ..|+..+..  ....|++++||..|+++|+.||+||+||.|..|+|
T Consensus        57 ~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~L  136 (476)
T COG5184          57 INKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGAL  136 (476)
T ss_pred             cccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccc
Confidence            456666888899999999999999999986655 778888766  55689999999999999999999999999999999


Q ss_pred             cCCCC--------------CcccccCCeeecc----cCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCc
Q 014027          128 EYGVQ--------------GTKLVTSPQLVES----LKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPND  189 (432)
Q Consensus       128 g~~~~--------------~~~~~~~p~~v~~----~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~  189 (432)
                      |....              .......|.+|+.    ....+|++++||++++++|+++|+||+||....+.++.+...+.
T Consensus       137 gr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s  216 (476)
T COG5184         137 GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS  216 (476)
T ss_pred             ccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccc
Confidence            98761              2345677888876    33458999999999999999999999999998888887743333


Q ss_pred             cc----ccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEE
Q 014027          190 VE----PHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVA  265 (432)
Q Consensus       190 ~~----p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~  265 (432)
                      ..    +.++..  ....|+++++|.+|.++|+.  +| ++|.||++..||||+........+..+..+- .-..|++|+
T Consensus       217 ~k~~~~~~p~~v--~~~~i~qla~G~dh~i~lt~--~G-~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f-~i~~i~~va  290 (476)
T COG5184         217 QKTSIQFTPLKV--PKKAIVQLAAGADHLIALTN--EG-KVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVA  290 (476)
T ss_pred             ccceeeeeeeec--CchheeeeccCCceEEEEec--CC-cEEEecCCcccccCCchhhhcccccccCChh-hhhhhhhcc
Confidence            22    333322  24569999999999999998  99 9999999999999998887766666664422 122378999


Q ss_pred             cCCceEEEEeCCCCEEEEecCCCCcccCCC----CCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCC
Q 014027          266 AGAWHAAVVGQDGRVCTWGWGRYGCLGHGN----EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESA  341 (432)
Q Consensus       266 ~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~----~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~g  341 (432)
                      ||.+|++||+++|+||+||.|-+||||.+.    ......|.....+.+..|.+|++|..|+++|..+|.+|+||++..+
T Consensus       291 cG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~  370 (476)
T COG5184         291 CGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRG  370 (476)
T ss_pred             cCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccc
Confidence            999999999999999999999999999982    1233456666667777899999999999999999999999999999


Q ss_pred             CCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCcccCCccccCCccC
Q 014027          342 SLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTER  421 (432)
Q Consensus       342 qlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gqLG~g~~~~~~~~  421 (432)
                      |||..+      +.......|.++...    ..+.+|+|     |..|+++.+.+|+||.||+|++||||+|+..  .+.
T Consensus       371 qlg~~~------~~~~~~~~~~~ls~~----~~~~~v~~-----gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~--~~~  433 (476)
T COG5184         371 QLGIQE------EITIDVSTPTKLSVA----IKLEQVAC-----GTHHNIARTDDGSVYSWGWGEHGNLGNGPKE--ADV  433 (476)
T ss_pred             cccCcc------cceeecCCccccccc----cceEEEEe-----cCccceeeccCCceEEecCchhhhccCCchh--hhc
Confidence            999977      123334444444433    57899999     9999999999999999999999999999865  456


Q ss_pred             CCceEee
Q 014027          422 GNPERVD  428 (432)
Q Consensus       422 ~~P~~v~  428 (432)
                      ..|+.+.
T Consensus       434 ~~pt~i~  440 (476)
T COG5184         434 LVPTLIR  440 (476)
T ss_pred             ccccccc
Confidence            7777776

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 4e-21
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 6e-19
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-18
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-18
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 1e-18
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 2e-08
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 3e-08
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 5e-06
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 2e-05
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 3e-04
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure 
Iteration: 1

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 150/357 (42%), Gaps = 23/357 (6%)
Query: 62  GVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGK 121
           G +Y +G N  GQLG     +   P P  +L                 ++  G++YA G 
Sbjct: 20  GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 79
Query: 122 DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDA 179
            + G     + GT+ V++P L+ES++++F+ + A+  G      LS EG VY++    D 
Sbjct: 80  GAGGRLG--IGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDG 137
Query: 180 RLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXX 239
           +LGH        P  ++ +L  I VV +                  +Y+           
Sbjct: 138 KLGHGNRSPCDRPR-VIESLRGIEVVDVAAGGAHSACVTAAGD---LYTWGKGRYGRLGH 193
Query: 240 XSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECE 299
               D+  P+L+E  Q   +                 D  V +WG G YG LG G  +  
Sbjct: 194 SDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGC 253
Query: 300 SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANV 359
            VP  + +L  +  + V  G   +  +++ G VY++G G+   LGH +          +V
Sbjct: 254 KVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--------DDHV 305
Query: 360 LTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVN 416
             P+ V  L+   ++V+ I+ T S+    H    TE G++Y +G  D+GQLG    N
Sbjct: 306 RRPRQVQGLQ--GKKVIAIA-TGSL----HCVCCTEDGEVYTWGDNDEGQLGDGTTN 355
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-111
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-85
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-71
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-111
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-82
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-74
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-14
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 6e-83
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 7e-76
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-62
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-59
3of7_A473 Regulator of chromosome condensation; beta-propell 8e-82
3of7_A473 Regulator of chromosome condensation; beta-propell 7e-65
3of7_A 473 Regulator of chromosome condensation; beta-propell 4e-49
3of7_A473 Regulator of chromosome condensation; beta-propell 8e-44
3of7_A 473 Regulator of chromosome condensation; beta-propell 3e-06
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-77
3mvd_K423 Regulator of chromosome condensation; protein-DNA 5e-76
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-62
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 3e-48
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 2e-40
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-29
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 5e-26
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-20
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  332 bits (854), Expect = e-111
 Identities = 103/384 (26%), Positives = 173/384 (45%), Gaps = 26/384 (6%)

Query: 47  QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGR 106
              +    ++     G +Y +G N  GQLG     +   P P  +L  +R +Q   G   
Sbjct: 5   HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQT 64

Query: 107 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVL 164
              ++  G++YA G  + G    G+ GT+ V++P L+ES++++F+ + A+  G      L
Sbjct: 65  LFAVTADGKLYATGYGAGGR--LGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLAL 122

Query: 165 SREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGM 224
           S EG VY++    D +LGH        P  +   L  I VV +AAG  +   +    +  
Sbjct: 123 SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSACVT---AAG 178

Query: 225 AVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWG 284
            +Y+ G G  G+LGH    D+  P+L+E  Q   +  +   +G      +  D  V +WG
Sbjct: 179 DLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG 238

Query: 285 WGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 344
            G YG LG G  +   VP  + +L  +  + V  G   +  +++ G VY++G G+   LG
Sbjct: 239 DGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLG 298

Query: 345 HNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGA 404
           H +          +V  P+ V  L+   ++V+ I+  +      H    TE G++Y +G 
Sbjct: 299 HGS--------DDHVRRPRQVQGLQ--GKKVIAIATGSL-----HCVCCTEDGEVYTWGD 343

Query: 405 GDKGQLGIELVNNQTERGNPERVD 428
            D+GQLG            P  V 
Sbjct: 344 NDEGQLGD---GTTNAIQRPRLVA 364
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.72
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.39
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.07
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 96.72
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.7
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.64
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 96.44
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 96.34
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.31
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 96.24
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 94.99
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 94.73
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 94.44
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 93.81
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 93.51
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 93.28
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 93.02
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 93.01
4g56_B357 MGC81050 protein; protein arginine methyltransfera 92.79
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 92.66
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 92.52
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 92.21
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 92.12
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 92.03
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 91.24
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 90.97
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 89.94
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 89.31
2xyi_A430 Probable histone-binding protein CAF1; transcripti 89.0
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 88.94
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 88.52
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 88.47
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 87.75
3jrp_A379 Fusion protein of protein transport protein SEC13 87.55
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 87.47
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 87.31
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 83.76
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 82.9
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 82.48
2xyi_A430 Probable histone-binding protein CAF1; transcripti 82.01
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 81.87
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 81.65
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=1.9e-74  Score=568.71  Aligned_cols=362  Identities=30%  Similarity=0.497  Sum_probs=334.1

Q ss_pred             eecccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCC-CEEEE
Q 014027           41 CRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAG-QVYAF  119 (432)
Q Consensus        41 ~~~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g-~vy~~  119 (432)
                      ..++|++|+||..|+++|+++|+||+||+|.+||||.++......|+++..+.+.+|++|+||..|+++|+++| +||+|
T Consensus        14 ~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w   93 (406)
T 4d9s_A           14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW   93 (406)
T ss_dssp             -CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred             CccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence            34689999999999999999999999999999999999998889999999888889999999999999999986 99999


Q ss_pred             eCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccccccccc
Q 014027          120 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL  199 (432)
Q Consensus       120 G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~  199 (432)
                      |.|.+||||.+.  ......|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.. +
T Consensus        94 G~n~~GqLG~g~--~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~  170 (406)
T 4d9s_A           94 GWGDFGRLGHGN--SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA-F  170 (406)
T ss_dssp             ECCGGGTTCSSS--CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG-G
T ss_pred             cCCCCcCCCCCC--CCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc-c
Confidence            999999999987  4566788888888888999999999999999999999999999999999999888888888876 7


Q ss_pred             CCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCC
Q 014027          200 ENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGR  279 (432)
Q Consensus       200 ~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~  279 (432)
                      .+.+|++|+||..|+++|++  +| +||+||.|.++|||.+.......|..+..+  ...+|++|+||.+|+++|+++|+
T Consensus       171 ~~~~i~~va~G~~hs~alt~--~G-~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~i~~va~G~~ht~~l~~~G~  245 (406)
T 4d9s_A          171 EGIRIKMVAAGAEHTAAVTE--DG-DLYGWGWGRYGNLGLGDRTDRLVPERVTST--GGEKMSMVACGWRHTISVSYSGA  245 (406)
T ss_dssp             TTCCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTCSSSSCCEEEEEECCCS--TTCCEEEEEECSSEEEEEETTCC
T ss_pred             CCCcEEEEecCCCeEEEEeC--CC-CEEEeeCCCCCCCCCCCCCCcCccEEeccc--CCceEEEEEECCCcEEEEcCCCC
Confidence            77889999999999999998  99 999999999999999998888888888654  34689999999999999999999


Q ss_pred             EEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCccccc
Q 014027          280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANV  359 (432)
Q Consensus       280 vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~  359 (432)
                      ||+||.|.+||||.++......|+++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.        ....
T Consensus       246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~  317 (406)
T 4d9s_A          246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN--------NLDQ  317 (406)
T ss_dssp             EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--------SSCE
T ss_pred             EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC--------CCCC
Confidence            99999999999999998888999999999998999999999999999999999999999999999988        5667


Q ss_pred             ccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCcccCCccccCCccCCCceEee
Q 014027          360 LTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD  428 (432)
Q Consensus       360 ~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gqLG~g~~~~~~~~~~P~~v~  428 (432)
                      ..|.++..+  ...+|++|+|     |.+|++||+++|+||+||.|++||||+|..   .+...|+.|+
T Consensus       318 ~~p~~v~~~--~~~~v~~va~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g~~---~~~~~P~~v~  376 (406)
T 4d9s_A          318 CSPVQVRFP--DDQKVVQVSC-----GWRHTLAVTERNNVFAWGRGTNGQLGIGES---VDRNFPKIIE  376 (406)
T ss_dssp             EEEEEECCG--GGCCEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSSSC---CCEEEEEECG
T ss_pred             ccCEEEecc--CCCcEEEEEe-----CCCeEEEEeCCCCEEEecCCCCCccCCCCC---CCCcCCEEee
Confidence            788888766  4578999999     999999999999999999999999999965   3456787775
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 432
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 7e-33
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-29
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-13
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-09
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 9e-09
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-04
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 0.001
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (315), Expect = 7e-33
 Identities = 85/394 (21%), Positives = 143/394 (36%), Gaps = 41/394 (10%)

Query: 54  HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDA 113
           H    T  G+V + G    GQLG G    E R +P        ++QA AG   T+ +S +
Sbjct: 7   HRSHSTEPGLVLTLGQGDVGQLGLGENVME-RKKPALVSIPEDVVQAEAGGMHTVCLSKS 65

Query: 114 GQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTF 173
           GQVY+FG +  G    G   +   +     +      VVQ + G+  TA L+ +GRV+ +
Sbjct: 66  GQVYSFGCNDEG--ALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW 123

Query: 174 SWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGL 233
               D            +    +    ++PVV++A+G  +L+ L        +    CG 
Sbjct: 124 GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLG---CGE 180

Query: 234 GGKLGHGSRTDEKHPRLIEQFQLLNLQP--------------VVVAAGAWHAAVVGQDGR 279
            G+LG                +LL  +                    GA+    +  +G 
Sbjct: 181 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240

Query: 280 VCTWGWGRYGCLGHGNEECESVPKV--VQALNDVKAIHVATGDYTTFVVSEDGDVYSFGC 337
           V  +G   Y  LG    E   +P+       +    +  + G + T  +  +G  YS G 
Sbjct: 241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 300

Query: 338 GESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESG 397
                        G G        P L++ L      V  ++   S       +A+T+ G
Sbjct: 301 -------AEYGRLGLGEGAEEKSIPTLISRLP----AVSSVACGAS-----VGYAVTKDG 344

Query: 398 KLYAFGAGDKGQLGIELVNNQTERGNPERVDIDL 431
           +++A+G G   QLG        +  +P  +    
Sbjct: 345 RVFAWGMGTNYQLGT---GQDEDAWSPVEMMGKQ 375
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.3
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.0
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 95.7
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 94.88
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 93.81
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 92.86
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 91.89
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 91.79
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 88.93
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 88.32
d1wp5a_323 Topoisomerase IV subunit A, ParC, C-terminal domai 86.44
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 84.18
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 84.07
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 83.71
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 81.65
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-59  Score=458.72  Aligned_cols=352  Identities=25%  Similarity=0.364  Sum_probs=288.7

Q ss_pred             CeEEEEecCCcEEEEeCCCCCCcCCCCCC-CcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCC
Q 014027           53 GHSIAVTSKGVVYSFGSNSSGQLGHGTTE-EEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGV  131 (432)
Q Consensus        53 ~~~~~l~~~g~v~~~G~n~~gqlG~~~~~-~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~  131 (432)
                      .|+++++.+|+||+||.|.+||||.+++. ....|++++.+.  +|++|+||..|+++|+++|+||+||.|.+||||.+.
T Consensus         6 ~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~   83 (401)
T d1a12a_           6 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDT   83 (401)
T ss_dssp             CCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS--CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCC
T ss_pred             eEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCC--CeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCccc
Confidence            69999999999999999999999999764 577899988765  699999999999999999999999999999999987


Q ss_pred             CCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecc
Q 014027          132 QGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY  211 (432)
Q Consensus       132 ~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~  211 (432)
                      ........|..+  ....+|++|+||..|+++++++|+||+||.+...+.+.........+........+.+|++|++|.
T Consensus        84 ~~~~~~~~~~~~--~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~  161 (401)
T d1a12a_          84 SVEGSEMVPGKV--ELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGN  161 (401)
T ss_dssp             CSTTGGGSCEEC--CCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECS
T ss_pred             cccccccccccc--ccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecc
Confidence            544444455544  446679999999999999999999999998876655544332222222222225566899999999


Q ss_pred             cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCC-----------Cceeeehh---hccCCccEEEEcCCceEEEEeCC
Q 014027          212 CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEK-----------HPRLIEQF---QLLNLQPVVVAAGAWHAAVVGQD  277 (432)
Q Consensus       212 ~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~-----------~p~~~~~~---~~~~~~i~~i~~G~~h~~~lt~~  277 (432)
                      .|+++++.  +| ++|+||.|.++|||........           .|..+...   .....+|.+|+||.+|+++|+++
T Consensus       162 ~~~~~~~~--~g-~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~  238 (401)
T d1a12a_         162 DHLVMLTA--DG-DLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHE  238 (401)
T ss_dssp             SEEEEEET--TS-CEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETT
T ss_pred             cceeeeec--CC-cccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecC
Confidence            99999998  88 9999999999999987543321           22222211   11235789999999999999999


Q ss_pred             CCEEEEecCCCCcccCCCCCCccCcEEecccCC--CcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCc
Q 014027          278 GRVCTWGWGRYGCLGHGNEECESVPKVVQALND--VKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNR  355 (432)
Q Consensus       278 g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~--~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~  355 (432)
                      |+||.||.|.++|+|.........+..+..+.+  ..++++++|..|+++++++|+||+||.|.+||||.+.       .
T Consensus       239 g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~-------~  311 (401)
T d1a12a_         239 GHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE-------G  311 (401)
T ss_dssp             CCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCT-------T
T ss_pred             CeEeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCc-------c
Confidence            999999999999999988777777777766543  4699999999999999999999999999999999987       3


Q ss_pred             ccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCcccCCccccCCccCCCceEeecc
Q 014027          356 HANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDID  430 (432)
Q Consensus       356 ~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gqLG~g~~~~~~~~~~P~~v~~~  430 (432)
                      ......|++++.+    ..|++|+|     |.+|++||+++|+||+||.|.+||||+|.+   .+.+.|++|..+
T Consensus       312 ~~~~~~P~~i~~~----~~i~~Is~-----G~~hs~alt~dG~v~~WG~n~~GQLG~G~~---~~~~~P~~v~~~  374 (401)
T d1a12a_         312 AEEKSIPTLISRL----PAVSSVAC-----GASVGYAVTKDGRVFAWGMGTNYQLGTGQD---EDAWSPVEMMGK  374 (401)
T ss_dssp             CCCEEEEEECCSS----SSEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSSSC---SCEEEEEECCST
T ss_pred             cccccCCEEcCCC----CCeEEEEe-----eCCEEEEEeCCCeEEEEecCCCCCCCCCCC---CCEecCEEeecc
Confidence            4455667777754    57999999     999999999999999999999999999954   456778887654
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure