Citrus Sinensis ID: 014182

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
Secondary Structure (PSIPRED)
cHHHHHHcccccccEEEcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccEEEEccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccEEcHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MNRLIYESRDSELNKivlddlpggpeAFELAAKFCYGIAVdltasnisGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWkacanpkgirwaytgrppkisspkwndmkdsspsrsqpvppdwwfedvsilrIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLiressgtadeissysasnsngscsswkGGLHMIVAGmkddpptvqakDQRMIIESLIsiippqkdsvSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLlipayskgetlyDVDLVQRLLEHFLVQeqtessspsrqsfsdkhmydasqrgngtsaKMRVARLVDGYLTEVARDRNLSLTKFQVLAEAlpesartcdDGLYRAIDSYLKVISNFCY
Flexible Loop (DISEMBL)
mnrliyesrdselnkiVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPkisspkwndmkdsspsrsqpvppdWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLisiippqkdsVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVqeqtessspsrqsfsdKHMYDasqrgngtsakmrVARLVDGYLTEvardrnlslTKFQVLAealpesartcddGLYRAIDSYLKVISNFCY
Low Complexity Region (SEG)
MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEIssysasnsngscssWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
Disordered region (IsUnstruct)
*************NKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTG**************************DWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIR***********************WKGGLHMIVAG************QRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLV*********************************RVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFC*
Disordered Region (DISOPRED)
MNRL************VLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPK***********************************WWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLI**********************************************DQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFL**********************************RVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNF**
Disordered Region (DISEMBL)
MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPK***************PPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESS*****************CSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLV********************DASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
Disordered Region (DISPRO)
MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAY************************PVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGL*********************************************AKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQ*************************TSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKVISNFCY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	429	2.2.26 [Sep-21-2011]
Q9FMF5	746	Root phototropism protein	yes	no	0.981	0.564	0.716	1e-180
Q5KS50	762	Coleoptile phototropism p	yes	no	0.976	0.549	0.605	1e-151
Q9S9Q9	665	BTB/POZ domain-containing	no	no	0.920	0.593	0.407	7e-82
Q9LFU0	607	Putative BTB/POZ domain-c	no	no	0.799	0.565	0.391	3e-78
Q9LYW0	592	BTB/POZ domain-containing	no	no	0.909	0.658	0.382	1e-76
Q9FN09	579	BTB/POZ domain-containing	no	no	0.832	0.616	0.386	1e-75
O80970	634	BTB/POZ domain-containing	no	no	0.885	0.599	0.363	5e-72
Q9C9V6	631	BTB/POZ domain-containing	no	no	0.911	0.619	0.398	2e-71
Q9FNB3	591	Putative BTB/POZ domain-c	no	no	0.848	0.615	0.392	5e-71
Q9FKB6	614	BTB/POZ domain-containing	no	no	0.839	0.586	0.371	8e-70

>sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2

 Score =  632 bits (1630), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 342/477 (71%), Positives = 370/477 (77%), Gaps = 56/477 (11%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           MNRLIYESRD +   ++LDDLPGGPEAFELA+KFCYG+ VDLTA+NISGLRCAAEYLEMT
Sbjct: 79  MNRLIYESRDPDPTILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMT 138

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           EDLEEGNLIFKTEAFLSYVVLSSWRDSI+VLKSCEKLSPWAENLQIVRRCSESIAWKAC+
Sbjct: 139 EDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACS 198

Query: 121 NPKGIRWAYTGRPPKI-------SSPKWNDMKDS----SPSR---SQPVPPDWWFEDVSI 166
           NPKGIRWAYTG+ P         SSP+WN+ KDS    SPSR   SQPVPPDWWFEDVSI
Sbjct: 199 NPKGIRWAYTGKAPSPSTTNFAGSSPRWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSI 258

Query: 167 LRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTA-------------- 212
           LRIDHFVRV+TAIKVKGMRFEL+GA IMHYA KWL GLI+E  G A              
Sbjct: 259 LRIDHFVRVITAIKVKGMRFELLGAVIMHYAGKWLPGLIKE-GGVAIAPAMSSAIGGGLG 317

Query: 213 ---DEISSYSASNSNGSCS--SWKGGLHMIVAGMKDDPPT----------VQAKDQRMII 257
              DE+S    SNS+G  S   WKGGLHM+++  K +             +  KDQRMI+
Sbjct: 318 LGGDEMSISCGSNSSGGSSGPDWKGGLHMVLSAGKTNGHQDSVACLAGLGISPKDQRMIV 377

Query: 258 ESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAY 317
           ESLISIIPPQKDSV+CSFLLRLLR ANMLKVAPAL+TELEKRVGMQFEQATL DLLIP Y
Sbjct: 378 ESLISIIPPQKDSVTCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLLIPGY 437

Query: 318 -SKGETLYDVDLVQRLLEHFLVQEQTES-SSPSRQSFSDKHMYDASQR----------GN 365
            +KGET+YDVDLVQRLLEHFLVQEQTE  S         + MY    R          GN
Sbjct: 438 NNKGETMYDVDLVQRLLEHFLVQEQTEGSSPSRMSPSPSQSMYADIPRGNNNNGGGGGGN 497

Query: 366 GTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLK 422
             +AKMRVARLVD YLTEVARDRNL LTKFQVLAEALPESARTCDDGLYRAIDSYLK
Sbjct: 498 NQNAKMRVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLYRAIDSYLK 554

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Signal transducer of the phototropic response and photo-induced movements. Involved in the phot1 pathway under low blue light (LBL) fluence rate and in the phot2 pathway under higher fluence rate of blue light (HBL). Necessary for root and hypocotyl phototropisms, but not for the regulation of stomata opening. Not involved in chloroplast accumulation and translocation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1

 Score =  534 bits (1376), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 293/484 (60%), Positives = 347/484 (71%), Gaps = 65/484 (13%)

Query: 1   MNRLIYES---------RDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLR 51
           M+R +YES           + +  + + DLPGG  +FELAA+F YG+AVDLTA+NISGLR
Sbjct: 76  MSRAVYESSAADEAEADAAAAVAVVEMGDLPGGAGSFELAARFSYGMAVDLTAANISGLR 135

Query: 52  CAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCS 111
           CAAEYLEMTE++EEGNLIFKTEAFLSYVVLSSWRDSI VLKSCE LSPWAENLQIVRRCS
Sbjct: 136 CAAEYLEMTEEMEEGNLIFKTEAFLSYVVLSSWRDSIAVLKSCEALSPWAENLQIVRRCS 195

Query: 112 ESIAWKACANPKGIRWAYT-------------------GRPPKISSPKWN-------DMK 145
           ESIAWKACANP+G+RWAYT                   G     +SP+WN       + K
Sbjct: 196 ESIAWKACANPRGVRWAYTGAGAGSGGARGGPAAIRGGGGSGGTASPRWNVGGGGGGESK 255

Query: 146 DSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLI 205
           +SSPSR    P DWWFEDVS+LRIDHFVRVVTAIKVKGMRF+LIGAAI HYA+KWL GL 
Sbjct: 256 ESSPSRQAVPPADWWFEDVSVLRIDHFVRVVTAIKVKGMRFDLIGAAITHYASKWLPGLT 315

Query: 206 RESSGTADEISSYSASNSNGSCSSWKGGLHMIV----AGMKDD---PPTVQAKDQRMIIE 258
           +++   A     ++ +++ G       GLHM++     G KDD     +  +++QRM++E
Sbjct: 316 KDAPLGATHDEPWAQASAAGVGGG---GLHMMIISGAGGGKDDVLAACSAPSREQRMVVE 372

Query: 259 SLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYS 318
           S+ISI PPQ+DSVSC FLLRLLR+A ML+ APALVTELEKRVGMQ EQA LADLLIP+Y 
Sbjct: 373 SIISITPPQRDSVSCGFLLRLLRLAIMLRAAPALVTELEKRVGMQLEQAALADLLIPSYG 432

Query: 319 --KGETLYDVDLVQRLLEHFLVQEQTE---SSSPSR---------QSFSDK------HMY 358
               +T YDVDLVQRL+EHFLVQEQTE   +SSP R         + +S +         
Sbjct: 433 GRAADTAYDVDLVQRLVEHFLVQEQTEMAVASSPGRGDPPPPPQPEYYSGRMPPSSAAAA 492

Query: 359 DASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAID 418
            AS    G +AK RVARL+D YL+EV+RDRNLSLTKFQVLAE+LPESAR CDDGLYRA+D
Sbjct: 493 SASASTGGLNAKARVARLLDSYLSEVSRDRNLSLTKFQVLAESLPESARACDDGLYRAVD 552

Query: 419 SYLK 422
           SYLK
Sbjct: 553 SYLK 556

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Plays a role as signal transduction component in coleoptile phototropism and lateral translocation of auxin.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2

 Score =  304 bits (779), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 176/432 (40%), Positives = 255/432 (59%), Gaps = 37/432 (8%)

Query: 1   MNRLIYESRDSELNKIVLD--DLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLE 58
           M R I E+     +K +++  DLPGG + FEL AKFCYG+ ++LTASN+  LRCAAE+LE
Sbjct: 53  MERRIAEASKEGDDKCLIEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLE 112

Query: 59  MTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKA 118
           MTE+  EGNLI +TE F + VVL SW+DSI  L SC+++  +A+ L I ++C ES+A +A
Sbjct: 113 MTEEHGEGNLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRA 172

Query: 119 CANPKGIRWAYTGRPPKISSPK----WNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVR 174
             +P    W        + SP     WN +  S+ +R +    DWW+ED S+L    F R
Sbjct: 173 STDPNLFGWPVVEHGGPMQSPGGSVLWNGI--STGARPKHTSSDWWYEDASMLSFPLFKR 230

Query: 175 VVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGL 234
           ++T ++ +G+R ++I  ++ +Y  K L GL R   G            S+G  S+  G  
Sbjct: 231 LITVMESRGIREDIIAGSLTYYTRKHLPGLKRRRGG----------PESSGRFSTPLGSG 280

Query: 235 HMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVT 294
           +++             ++Q+ ++E +  ++  QK  V   F + +LR+A +LK +P  + 
Sbjct: 281 NVL-----------SEEEQKNLLEEIQELLRMQKGLVPTKFFVDMLRIAKILKASPDCIA 329

Query: 295 ELEKRVGMQFEQATLADLLIPAYSKG-ETLYDVDLVQRLLEHFLVQEQTES---SSPSRQ 350
            LEKR+GMQ +QA L DL++P++S   ETLYDVD VQR+L+HFL  +Q       SP   
Sbjct: 330 NLEKRIGMQLDQAALEDLVMPSFSHTMETLYDVDSVQRILDHFLGTDQIMPGGVGSPC-S 388

Query: 351 SFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCD 410
           S  D ++  + Q     +A   VA+L+DGYL EVA D NL L KFQ LA ++PE AR  D
Sbjct: 389 SVDDGNLIGSPQSITPMTA---VAKLIDGYLAEVAPDVNLKLPKFQALAASIPEYARLLD 445

Query: 411 DGLYRAIDSYLK 422
           DGLYRAID YLK
Sbjct: 446 DGLYRAIDIYLK 457

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFU0|DOT3_ARATH Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1

 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/406 (39%), Positives = 232/406 (57%), Gaps = 63/406 (15%)

Query: 18  LDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLS 77
           L++ PGG + FE   KFCY + +DL   N++ LRCA+EYL MTE+ E GNLI KTEAF++
Sbjct: 95  LENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCASEYLYMTEEFEAGNLISKTEAFIT 154

Query: 78  YVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKIS 137
           +VVL+SWRD++ VL+SC  LSPWAENLQIVRRC + +AWKAC +                
Sbjct: 155 FVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDLLAWKACND---------------- 198

Query: 138 SPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYA 197
               N++ +    R++       + D++ L IDHF+RV+T +K +  + ++ G  IM YA
Sbjct: 199 ----NNIPEDVVDRNERC----LYNDIATLDIDHFMRVITTMKARRAKPQITGKIIMKYA 250

Query: 198 AKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMII 257
             +L  +  +  G    I  Y    +    S  +G +        ++  ++  ++ +  I
Sbjct: 251 DNFLPVINDDLEG----IKGYGLGKNELQFSVNRGRM--------EESNSLGCQEHKETI 298

Query: 258 ESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAY 317
           ESL+S++PPQ  +VSC FLLR+L+ + +   +PAL+++LEKRVGM  E A + DLLIP +
Sbjct: 299 ESLVSVLPPQSGAVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNF 358

Query: 318 SKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLV 377
              E    V    R+ E FL+ EQ +                          K  +++L+
Sbjct: 359 KNEEQQERV----RIFEFFLMHEQQQ-----------------------VLGKPSISKLL 391

Query: 378 DGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKV 423
           D YL E+A+D  L +TKFQVLAE LPE+A  C DGLYRAID +LK 
Sbjct: 392 DNYLAEIAKDPYLPITKFQVLAEMLPENAWKCHDGLYRAIDMFLKT 437

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1

 Score =  287 bits (734), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/431 (38%), Positives = 238/431 (55%), Gaps = 41/431 (9%)

Query: 1   MNRLIYESRDSELNKIVL--DDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLE 58
           + RLI ES   + +  VL  D++PGG + FEL  KFCYG+ ++LTA N+  LRCAAEYLE
Sbjct: 53  LERLIEESSTDDGSGCVLSLDEIPGGGKTFELVTKFCYGVKIELTAFNVVSLRCAAEYLE 112

Query: 59  MTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKA 118
           MT++  EGNL+  TE FL+  V  +W DSI  L++CE++  +AE+L I+ RC +S+A KA
Sbjct: 113 MTDNYGEGNLVGMTETFLNE-VFGNWTDSIKALQTCEEVIDYAEDLHIISRCVDSLAVKA 171

Query: 119 CANPKGIRW-------AYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDH 171
           CA+P    W       A +G+  +  S  WN +  +S    Q    DWWF+D S L +  
Sbjct: 172 CADPSLFNWPVGGGKNATSGQNTEDESHLWNGIS-ASGKMLQHTGEDWWFDDASFLSLPL 230

Query: 172 FVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWK 231
           F R++TAI+ +GM+ E I  A+M+Y  K +  + R+ +     I +              
Sbjct: 231 FKRLITAIEARGMKLENIAMAVMYYTRKHVPLMNRQVNMDEQVIET-------------- 276

Query: 232 GGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPA 291
                         P    +DQ+  +E ++ ++P +K      FLLRLL+ A +L  + +
Sbjct: 277 --------------PNPSEEDQKTCLEEIVGLLPSKKGVNPTKFLLRLLQTAMVLHASQS 322

Query: 292 LVTELEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQS 351
               LE+R+G Q +QA L DLLIP     ETLYDV+ V R++E F+   +     PS   
Sbjct: 323 SRENLERRIGNQLDQAALVDLLIPNMGYSETLYDVECVLRMIEQFVSSTEQAGIVPSPCI 382

Query: 352 FSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDD 411
             + H+       +  +    VA LVDGYL EVA D NL L KF+ +A A+P+ AR  DD
Sbjct: 383 IEEGHL--VKDGADLLTPTTLVATLVDGYLAEVAPDVNLKLAKFEAIAAAIPDYARPLDD 440

Query: 412 GLYRAIDSYLK 422
           G+Y AID YLK
Sbjct: 441 GVYHAIDVYLK 451

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN09|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1

 Score =  284 bits (726), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/414 (38%), Positives = 234/414 (56%), Gaps = 57/414 (13%)

Query: 11  SELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIF 70
           S+ ++I + D+PGGP AFE+ AKFCYG+AV L A N+  +RCAAEYLEM E +E GNL++
Sbjct: 67  SDDDEIRIPDIPGGPPAFEICAKFCYGMAVTLNAYNVVAVRCAAEYLEMYESIENGNLVY 126

Query: 71  KTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYT 130
           K E FL+  VL SW+DSIIVL++     PW+E++++  RC ESIA KA  +P  + W+YT
Sbjct: 127 KMEVFLNSSVLRSWKDSIIVLQTTRSFYPWSEDVKLDVRCLESIALKAAMDPARVDWSYT 186

Query: 131 GRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRF-ELI 189
               K+  P+ N+           VP DWW ED++ L ID F RVV+ I+ KG    E+I
Sbjct: 187 YNRRKLLPPEMNN---------NSVPRDWWVEDLAELSIDLFKRVVSTIRRKGGVLPEVI 237

Query: 190 GAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQ 249
           G A+  YAAK + G + ++    D                                    
Sbjct: 238 GEALEVYAAKRIPGFMIQNDDNDD---------------------------------EED 264

Query: 250 AKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATL 309
             +QR ++E+L+S++P +K SVSC FL++LL+ +   +       EL +R+G + E+A +
Sbjct: 265 VMEQRSLLETLVSMLPSEKQSVSCGFLIKLLKSSVSFECGEEERKELSRRIGEKLEEANV 324

Query: 310 ADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSA 369
            DLLI A   GET+YD+D+V+ L++ F+ Q +           +D             S+
Sbjct: 325 GDLLIRAPEGGETVYDIDIVETLIDEFVTQTEKRDELDCSDDIND-------------SS 371

Query: 370 KMRVARLVDGYLTEVAR-DRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLK 422
           K  VA+L+DGYL E++R + NLS TKF  +AE +    R   DG+YRAID +LK
Sbjct: 372 KANVAKLIDGYLAEISRIETNLSTTKFITIAEKVSTFPRQSHDGVYRAIDMFLK 425

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). May play an essential role in auxin-mediated organogenesis and in root gravitropic responses.

Arabidopsis thaliana (taxid: 3702)

>sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1

 Score =  271 bits (694), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 155/426 (36%), Positives = 244/426 (57%), Gaps = 46/426 (10%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           + +L+  +  + ++ I +  +PGGP AFE  AKFCYG+ V L+A N+   RCAAEYL M 
Sbjct: 54  LQKLLSSTDKNNIDDIDISGIPGGPTAFETCAKFCYGMTVTLSAYNVVATRCAAEYLGMH 113

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           E +E+GNLI+K + FLS  +  SW+DSIIVL++ +   P +E+L++V  C ++IA KAC 
Sbjct: 114 ETVEKGNLIYKIDVFLSSSLFRSWKDSIIVLQTTKPFLPLSEDLKLVSLCIDAIATKACV 173

Query: 121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
           +   + W+YT    K++    N+  DS  +R   VP DWW ED+  L ID++ RV+  IK
Sbjct: 174 DVSHVEWSYTYNKKKLAEE--NNGADSIKARD--VPHDWWVEDLCELEIDYYKRVIMNIK 229

Query: 181 VKG-MRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVA 239
            K  +  E+IG A+  Y  + L+G  +                                 
Sbjct: 230 TKCILGGEVIGEALKAYGYRRLSGFNK--------------------------------- 256

Query: 240 GMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKR 299
           G+ +    V+ K    IIE+L+ ++P +K+SVSC FLL+LL+   M+     +  +L +R
Sbjct: 257 GVMEQGDLVKHK---TIIETLVWLLPAEKNSVSCGFLLKLLKAVTMVNSGEVVKEQLVRR 313

Query: 300 VGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYD 359
           +G Q E+A++A+LLI ++   ETLYDVDLVQ+++  F+ +++  +S    Q   D     
Sbjct: 314 IGQQLEEASMAELLIKSHQGSETLYDVDLVQKIVMEFMRRDK--NSEIEVQDDEDGFEVQ 371

Query: 360 ASQRGNGT---SAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRA 416
             ++  G    ++K+ VA+++D YLTE+A+D NL  +KF  +AE++    R   D LYRA
Sbjct: 372 EVRKLPGILSEASKLMVAKVIDSYLTEIAKDPNLPASKFIDVAESVTSIPRPAHDALYRA 431

Query: 417 IDSYLK 422
           ID +LK
Sbjct: 432 IDMFLK 437

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). May play an essential role in auxin-mediated organogenesis and in root gravitropic responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9V6|Y1790_ARATH BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1

 Score =  270 bits (689), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 178/447 (39%), Positives = 254/447 (56%), Gaps = 56/447 (12%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           + R+  ES +S    I L + PGG EAFEL AKFCYGI + ++A NI   RCAAEYL+M+
Sbjct: 53  LQRMCSESPES---IIQLPEFPGGVEAFELCAKFCYGITITISAYNIVAARCAAEYLQMS 109

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           E++E+GNL++K E F +  +L+ WRDSI+ L++ +    W+E+L I  RC E+IA K  +
Sbjct: 110 EEVEKGNLVYKLEVFFNSCILNGWRDSIVTLQTTKAFPLWSEDLAITSRCIEAIASKVLS 169

Query: 121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
           +P  +  +++       S +  D  D S +R+      WW ED++ L ID + R + AIK
Sbjct: 170 HPSKVSLSHS------HSRRVRD-DDMSSNRAAASSRGWWAEDIAELGIDLYWRTMIAIK 222

Query: 181 VKG-MRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVA 239
             G +   LIG A+  YA+KWL  L R       +  S S S+                 
Sbjct: 223 SGGKVPASLIGDALRVYASKWLPTLQRNRKVVKKKEDSDSDSD----------------- 265

Query: 240 GMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKR 299
                  T  +   R+++ES+IS++P +K +VSCSFLL+LL+ AN+L  + +   EL +R
Sbjct: 266 -------TDTSSKHRLLLESIISLLPAEKGAVSCSFLLKLLKAANILNASTSSKMELARR 318

Query: 300 VGMQFEQATLADLLIPAYS-KGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMY 358
           V +Q E+AT++DLLIP  S K E LYDVD+V  +LE F+VQ QT  S P+      K M 
Sbjct: 319 VALQLEEATVSDLLIPPMSYKSELLYDVDIVATILEQFMVQGQT--SPPTSPLRGKKGMM 376

Query: 359 DASQRGNGTS------------------AKMRVARLVDGYLTEVARDRNLSLTKFQVLAE 400
           D  +R                       +K++VA+LVDGYL ++ARD NL L+KF  LAE
Sbjct: 377 DRRRRSRSAENIDLEFQESRRSSSASHSSKLKVAKLVDGYLQQIARDVNLPLSKFVTLAE 436

Query: 401 ALPESARTCDDGLYRAIDSYLKVISNF 427
           ++PE +R   D LYRAID YLK   N 
Sbjct: 437 SVPEFSRLDHDDLYRAIDIYLKAHKNL 463

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1

 Score =  268 bits (686), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 163/415 (39%), Positives = 229/415 (55%), Gaps = 51/415 (12%)

Query: 18  LDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLS 77
           L D+PGGPE F L AKFCYG+ +++T  N   LRCAAEYL+M+E+  + NLI+ TE+FL+
Sbjct: 69  LHDIPGGPETFLLVAKFCYGVRIEVTPENAVSLRCAAEYLQMSENYGDANLIYLTESFLN 128

Query: 78  YVVLSSWRDSIIVL-KSCE-KLSPWAENLQIVRRCSESIAWKACA--NPKGIRWAYT-GR 132
             V  +W DSI  L KSCE K+ P AE L IV RC  S+A KACA  N     W  +   
Sbjct: 129 DHVFVNWEDSIKALEKSCEPKVLPLAEELHIVSRCIGSLAMKACAEDNTSFFNWPISLPE 188

Query: 133 PPKISSPKWNDMKDSSPSRSQPVPPDWWFEDV-SILRIDHFVRVVTAIKVKGMRFELIGA 191
               ++  WN ++  + S       +WWF DV S L +  + R +  ++ +G+   +I A
Sbjct: 189 GTTTTTIYWNGIQTKATSE------NWWFNDVSSFLDLPMYKRFIKTVESRGVNAGIIAA 242

Query: 192 AIMHYAAKW--LTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQ 249
           ++ HYA +   L G  R+S   ++E ++Y                         D     
Sbjct: 243 SVTHYAKRNLPLLGCSRKSGSPSEEGTNYG------------------------DDMYYS 278

Query: 250 AKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATL 309
            ++QR ++E ++ ++P +K   S  FLLRLLR + +L  +      LEKR+GMQ ++A L
Sbjct: 279 HEEQRSLLEEIVELLPGKKCVTSTKFLLRLLRTSMVLHASQVTQETLEKRIGMQLDEAAL 338

Query: 310 ADLLIP--AYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGT 367
            DLLIP   YS GETLYD D VQR+L+HF++   + S    +Q   D H           
Sbjct: 339 EDLLIPNMKYS-GETLYDTDSVQRILDHFMLTFDS-SIVEEKQMMGDSH---------PL 387

Query: 368 SAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLK 422
            +  +VA L+DGYL EVA D NL L+KFQ L   +PE  R  DDG+YRAID Y+K
Sbjct: 388 KSITKVASLIDGYLAEVASDENLKLSKFQALGALIPEDVRPMDDGIYRAIDIYIK 442

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1

 Score =  264 bits (675), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 159/428 (37%), Positives = 239/428 (55%), Gaps = 68/428 (15%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           + R++ E RDS+++K+ L +LPGG E FELAAKFCYGI  ++T+SN++ L C ++YLEMT
Sbjct: 68  IRRIVAEHRDSDISKVELLNLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMT 127

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           E+  + NL  +TE +L  +V  +    + VLK  E L P A+ L I+ RC ++IA KACA
Sbjct: 128 EEYSKDNLASRTEEYLESIVCKNLEMCVQVLKQSEILLPLADELNIIGRCIDAIASKACA 187

Query: 121 NPKG-----IRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRV 175
                    + ++ +GR           +  S   +S     DWW ED+S+LRID + RV
Sbjct: 188 EQIASSFSRLEYSSSGR-----------LHMSRQVKSSGDGGDWWIEDLSVLRIDLYQRV 236

Query: 176 VTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLH 235
           + A+K +G+R E IGA+++ YA + LT                                 
Sbjct: 237 MNAMKCRGVRPESIGASLVSYAERELTK-------------------------------- 264

Query: 236 MIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTE 295
                        +++ ++ I+E++++++P +   V  SFL  LLR A +L  + +   +
Sbjct: 265 -------------RSEHEQTIVETIVTLLPVENLVVPISFLFGLLRRAVILDTSVSCRLD 311

Query: 296 LEKRVGMQFEQATLADLLIPAYSK-GETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSD 354
           LE+R+G Q + ATL DLLIP++   G+TL+D+D V R+L +F  Q+  + S      F  
Sbjct: 312 LERRLGSQLDMATLDDLLIPSFRHAGDTLFDIDTVHRILVNF-SQQGGDDSEDEESVFEC 370

Query: 355 KHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLY 414
              +  SQ     +A  +VA+LVD YL E+A D NL L+KF ++AEALP  ART  DGLY
Sbjct: 371 DSPHSPSQ-----TAMFKVAKLVDSYLAEIAPDANLDLSKFLLIAEALPPHARTLHDGLY 425

Query: 415 RAIDSYLK 422
           RAID YLK
Sbjct: 426 RAIDLYLK 433

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
224095855	676	predicted protein [Populus trichocarpa]	0.983	0.624	0.879	0.0
225464091	674	PREDICTED: root phototropism protein 3 [	0.983	0.626	0.869	0.0
449524605	613	PREDICTED: LOW QUALITY PROTEIN: root pho	0.983	0.688	0.862	0.0
449438761	675	PREDICTED: root phototropism protein 3-l	0.983	0.625	0.862	0.0
224141185	672	predicted protein [Populus trichocarpa]	0.976	0.623	0.869	0.0
147838167	665	hypothetical protein VITISV_002200 [Viti	0.962	0.621	0.864	0.0
255563230	663	hypothetical protein RCOM_0884570 [Ricin	0.958	0.619	0.893	0.0
356554757	672	PREDICTED: root phototropism protein 3-l	0.974	0.622	0.827	0.0
357476259	669	Root phototropism protein [Medicago trun	0.972	0.623	0.8	0.0
356547450	501	PREDICTED: root phototropism protein 3-l	0.990	0.848	0.824	0.0

>gi|224095855|ref|XP_002310495.1| predicted protein [Populus trichocarpa] gi|222853398|gb|EEE90945.1| predicted protein [Populus trichocarpa]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/424 (87%), Positives = 395/424 (93%), Gaps = 2/424 (0%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           MNRLIYESRD +LNK+ LDDLPGGPEAFELAAKFCYGIAVDLTA+NISGLRCAAEYLEMT
Sbjct: 71  MNRLIYESRDLDLNKVALDDLPGGPEAFELAAKFCYGIAVDLTAANISGLRCAAEYLEMT 130

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           EDLEEGNLIFKTEAFLSYVVLSSWRDSI+VLKS EKLSPWAENLQIVRRCSESIAWKACA
Sbjct: 131 EDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSSEKLSPWAENLQIVRRCSESIAWKACA 190

Query: 121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
           NPKGIRWAYTG+PPK+SSPKWN+MKDSSPSR+  VPPDWWFEDVSILRIDHFVRVVTAIK
Sbjct: 191 NPKGIRWAYTGKPPKVSSPKWNEMKDSSPSRNSQVPPDWWFEDVSILRIDHFVRVVTAIK 250

Query: 181 VKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCS--SWKGGLHMIV 238
           VKGMRFEL GAAI+HYA KWL GLI+   G  DE S+ S SNS+ S    SWKGGLHMIV
Sbjct: 251 VKGMRFELTGAAIVHYAGKWLPGLIQNGGGFIDEASNSSNSNSSSSSGGISWKGGLHMIV 310

Query: 239 AGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEK 298
           AG KDD PTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEK
Sbjct: 311 AGTKDDTPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEK 370

Query: 299 RVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMY 358
           RVGMQFEQATLADLL+P+Y+K ETL+DVDLVQRLLEHFLVQEQTESSSPSRQ+FSDK+M+
Sbjct: 371 RVGMQFEQATLADLLVPSYNKNETLFDVDLVQRLLEHFLVQEQTESSSPSRQTFSDKNMH 430

Query: 359 DASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAID 418
           D +QR   TS+KMRVARLVD YLTEV+RDRNLSLTKFQVLAEALPESARTCDDGLYRAID
Sbjct: 431 DGTQRSANTSSKMRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDGLYRAID 490

Query: 419 SYLK 422
           SYLK
Sbjct: 491 SYLK 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464091|ref|XP_002269380.1| PREDICTED: root phototropism protein 3 [Vitis vinifera]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/422 (86%), Positives = 393/422 (93%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           MNR+IYES +++LNKI  DDLPGGPEAFELAAKFCYGIAVDLTA+NISGLRCAAEYLEMT
Sbjct: 71  MNRIIYESHNADLNKIAFDDLPGGPEAFELAAKFCYGIAVDLTAANISGLRCAAEYLEMT 130

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA
Sbjct: 131 EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 190

Query: 121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
           NPKGI+WAYTG+P K+SSPKWN+MKDSSPSR Q VPPDWWFEDVSILRIDHFVRV+TAIK
Sbjct: 191 NPKGIKWAYTGKPLKVSSPKWNEMKDSSPSRGQQVPPDWWFEDVSILRIDHFVRVITAIK 250

Query: 181 VKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAG 240
           VKGMRFELIGA+IM YA KWL GLI+E  GT       ++SN +   SSWKGGL M+VAG
Sbjct: 251 VKGMRFELIGASIMQYATKWLPGLIKEGMGTGMGDEGSNSSNGSSGSSSWKGGLQMVVAG 310

Query: 241 MKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV 300
            KDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV
Sbjct: 311 AKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV 370

Query: 301 GMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDA 360
           GMQFEQATLADLLIP+Y+K ETLYDVDLVQRLLEHFLVQEQT+SSSPSRQ F +KH+Y+ 
Sbjct: 371 GMQFEQATLADLLIPSYNKSETLYDVDLVQRLLEHFLVQEQTDSSSPSRQPFPEKHLYEG 430

Query: 361 SQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY 420
           +QRGNG++AKMRVARLVD YLTEV+RDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY
Sbjct: 431 TQRGNGSNAKMRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY 490

Query: 421 LK 422
           LK
Sbjct: 491 LK 492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524605|ref|XP_004169312.1| PREDICTED: LOW QUALITY PROTEIN: root phototropism protein 3-like, partial [Cucumis sativus]

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/422 (86%), Positives = 394/422 (93%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           MNR IYESRD +LNK+VLDDLPGG EAFELAAKFCYGIAVDLTA+NISGLRCAAEYLEMT
Sbjct: 10  MNRCIYESRDPDLNKVVLDDLPGGAEAFELAAKFCYGIAVDLTAANISGLRCAAEYLEMT 69

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           EDLEEGNLIFKTEAFLSYVVLSSWRDSI+VLKSCEKLSPWAENLQIVRRCSESIAWKACA
Sbjct: 70  EDLEEGNLIFKTEAFLSYVVLSSWRDSIVVLKSCEKLSPWAENLQIVRRCSESIAWKACA 129

Query: 121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
           NPKGIRWAYTG+PPK+SSPKWND+KDSSPSR+Q VPPDWWFEDVSILRIDHFVRV+TAIK
Sbjct: 130 NPKGIRWAYTGKPPKVSSPKWNDLKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIK 189

Query: 181 VKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAG 240
           VKGMRFELIG++IMHY++KWL GL+ +++   DE S+ + SN++   +SWKGGLHMIVAG
Sbjct: 190 VKGMRFELIGSSIMHYSSKWLPGLVTDTTNAGDEGSTSTTSNTSSGSNSWKGGLHMIVAG 249

Query: 241 MKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV 300
            K+D   +QAKDQRMIIESLISIIPPQKD VSCSFLL+LLRMANMLKVAPALVTELEKRV
Sbjct: 250 NKEDHSAIQAKDQRMIIESLISIIPPQKDCVSCSFLLKLLRMANMLKVAPALVTELEKRV 309

Query: 301 GMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDA 360
           GMQFEQATL DLLIP+YSK +T+YDVDL+QRLLEHFLVQEQTE SSPSRQSFSDKHMYD 
Sbjct: 310 GMQFEQATLVDLLIPSYSKSDTMYDVDLIQRLLEHFLVQEQTEISSPSRQSFSDKHMYDG 369

Query: 361 SQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY 420
           SQRG   +AKMRVARLVD YLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY
Sbjct: 370 SQRGTVPNAKMRVARLVDSYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY 429

Query: 421 LK 422
           LK
Sbjct: 430 LK 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438761|ref|XP_004137156.1| PREDICTED: root phototropism protein 3-like [Cucumis sativus]

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/422 (86%), Positives = 394/422 (93%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           MNR IYESRD +LNK+VLDDLPGG EAFELAAKFCYGIAVDLTA+NISGLRCAAEYLEMT
Sbjct: 72  MNRCIYESRDPDLNKVVLDDLPGGAEAFELAAKFCYGIAVDLTAANISGLRCAAEYLEMT 131

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           EDLEEGNLIFKTEAFLSYVVLSSWRDSI+VLKSCEKLSPWAENLQIVRRCSESIAWKACA
Sbjct: 132 EDLEEGNLIFKTEAFLSYVVLSSWRDSIVVLKSCEKLSPWAENLQIVRRCSESIAWKACA 191

Query: 121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
           NPKGIRWAYTG+PPK+SSPKWND+KDSSPSR+Q VPPDWWFEDVSILRIDHFVRV+TAIK
Sbjct: 192 NPKGIRWAYTGKPPKVSSPKWNDLKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIK 251

Query: 181 VKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAG 240
           VKGMRFELIG++IMHY++KWL GL+ +++   DE S+ + SN++   +SWKGGLHMIVAG
Sbjct: 252 VKGMRFELIGSSIMHYSSKWLPGLVTDTTNAGDEGSTSTTSNTSSGSNSWKGGLHMIVAG 311

Query: 241 MKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV 300
            K+D   +QAKDQRMIIESLISIIPPQKD VSCSFLL+LLRMANMLKVAPALVTELEKRV
Sbjct: 312 NKEDHSAIQAKDQRMIIESLISIIPPQKDCVSCSFLLKLLRMANMLKVAPALVTELEKRV 371

Query: 301 GMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDA 360
           GMQFEQATL DLLIP+YSK +T+YDVDL+QRLLEHFLVQEQTE SSPSRQSFSDKHMYD 
Sbjct: 372 GMQFEQATLVDLLIPSYSKSDTMYDVDLIQRLLEHFLVQEQTEISSPSRQSFSDKHMYDG 431

Query: 361 SQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY 420
           SQRG   +AKMRVARLVD YLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY
Sbjct: 432 SQRGTVPNAKMRVARLVDSYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY 491

Query: 421 LK 422
           LK
Sbjct: 492 LK 493

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141185|ref|XP_002323955.1| predicted protein [Populus trichocarpa] gi|222866957|gb|EEF04088.1| predicted protein [Populus trichocarpa]

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/422 (86%), Positives = 389/422 (92%), Gaps = 3/422 (0%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           MNRLIYESRD  LNK+ LDDLPGGPEAFELAAKFCYGIAVDLTA+NISGLRCAAEYLEMT
Sbjct: 71  MNRLIYESRDLGLNKVALDDLPGGPEAFELAAKFCYGIAVDLTAANISGLRCAAEYLEMT 130

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           EDLEEGNL FKTEAFLSYVVLSSWRDSI+VLKSCEKLSPWAENLQIVRRCSESIAWKACA
Sbjct: 131 EDLEEGNLTFKTEAFLSYVVLSSWRDSIVVLKSCEKLSPWAENLQIVRRCSESIAWKACA 190

Query: 121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
           NPKGIRWAYTG+PPK+SSPKWN+MKDSSPSR+  VPPDWWFEDVSILRIDHFVRV+TAIK
Sbjct: 191 NPKGIRWAYTGKPPKVSSPKWNEMKDSSPSRNSQVPPDWWFEDVSILRIDHFVRVITAIK 250

Query: 181 VKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAG 240
           VKGMRFELIGAAIMHYA KWL GLI++  G+ DE S+ S S+     SSWKGGLHMIVA 
Sbjct: 251 VKGMRFELIGAAIMHYAGKWLPGLIKDGGGSIDEASNSSNSSGG---SSWKGGLHMIVAV 307

Query: 241 MKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV 300
            KDD PT + KDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV
Sbjct: 308 SKDDTPTAETKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV 367

Query: 301 GMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDA 360
           GMQFEQATLADLLIP+Y+K ET YDVDLVQRLLEHFLVQEQ ESSSP+ QSFSDKHMYD 
Sbjct: 368 GMQFEQATLADLLIPSYNKNETSYDVDLVQRLLEHFLVQEQIESSSPTTQSFSDKHMYDG 427

Query: 361 SQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY 420
           +QRG   SAK+RVARLVD YLTEV+RDRNLSLTKFQVLAEALP+SARTCDDGLYRA+DSY
Sbjct: 428 AQRGANPSAKIRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPDSARTCDDGLYRAVDSY 487

Query: 421 LK 422
           LK
Sbjct: 488 LK 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838167|emb|CAN60915.1| hypothetical protein VITISV_002200 [Vitis vinifera]

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/422 (86%), Positives = 390/422 (92%), Gaps = 9/422 (2%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           MNR+IYES +++LNKI  DDLPGGPEAFELAAKFCYGIAVDLTA+NISGLRCAAEYLEMT
Sbjct: 71  MNRIIYESHNADLNKIAFDDLPGGPEAFELAAKFCYGIAVDLTAANISGLRCAAEYLEMT 130

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA
Sbjct: 131 EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 190

Query: 121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
           NPKGI+WAYTG+P K+SSPKWN+MKDSSPSR Q VPPDWWFEDVSILRIDHFVRV+TAIK
Sbjct: 191 NPKGIKWAYTGKPLKVSSPKWNEMKDSSPSRGQQVPPDWWFEDVSILRIDHFVRVITAIK 250

Query: 181 VKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAG 240
           VKGMRFELIGA+IM YA KWL G+        DE S+ S  +S    SSWKGGL M+VAG
Sbjct: 251 VKGMRFELIGASIMQYATKWLPGM-------GDEGSNSSNGSS--GSSSWKGGLQMVVAG 301

Query: 241 MKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV 300
            KDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV
Sbjct: 302 AKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV 361

Query: 301 GMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDA 360
           GMQFEQATLADLLIP+Y+K ETLYDVDLVQRLLEHFLVQEQT+SSSPSRQ F +KH+Y+ 
Sbjct: 362 GMQFEQATLADLLIPSYNKSETLYDVDLVQRLLEHFLVQEQTDSSSPSRQPFPEKHLYEG 421

Query: 361 SQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY 420
           +QRGNG++AKMRVARLVD YLTEV+RDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY
Sbjct: 422 TQRGNGSNAKMRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY 481

Query: 421 LK 422
           LK
Sbjct: 482 LK 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563230|ref|XP_002522618.1| hypothetical protein RCOM_0884570 [Ricinus communis] gi|223538094|gb|EEF39705.1| hypothetical protein RCOM_0884570 [Ricinus communis]

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/422 (89%), Positives = 395/422 (93%), Gaps = 11/422 (2%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           MNRLIYESRD +LNKI LDD+PGGPEAFELAAKFCYGIAVDLTA NISGLRCAAEYLEMT
Sbjct: 71  MNRLIYESRDLDLNKIALDDIPGGPEAFELAAKFCYGIAVDLTAGNISGLRCAAEYLEMT 130

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           EDLEEGNLIFKTEAFLSYVVLSSWRDSI+VLKSCEKLSPWAENLQIVRRCSESIAWKACA
Sbjct: 131 EDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACA 190

Query: 121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
           NPKGIRWAYTG+PPK+SSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRV+TAIK
Sbjct: 191 NPKGIRWAYTGKPPKVSSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVITAIK 250

Query: 181 VKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAG 240
           VKGMRFELIGAAIM+YAAKWL GLI++  G+ DE     +++SN S SSWKGGLHMIVAG
Sbjct: 251 VKGMRFELIGAAIMNYAAKWLPGLIKDGVGSVDE----GSNSSNSSTSSWKGGLHMIVAG 306

Query: 241 MKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV 300
            KDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMAN+LKVAPALVTELEKRV
Sbjct: 307 TKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANLLKVAPALVTELEKRV 366

Query: 301 GMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDA 360
           GMQFEQATLADLLIP+Y+K ETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSD      
Sbjct: 367 GMQFEQATLADLLIPSYNKSETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSD------ 420

Query: 361 SQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY 420
            QRG   +AKMRVARLVD YLTEV+RDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY
Sbjct: 421 -QRGTNPNAKMRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSY 479

Query: 421 LK 422
           LK
Sbjct: 480 LK 481

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554757|ref|XP_003545709.1| PREDICTED: root phototropism protein 3-like [Glycine max]

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/424 (82%), Positives = 383/424 (90%), Gaps = 6/424 (1%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           ++R+IYES D +LNKIV+DD+PGG EAFELAAKFCYGIAVDLTA NISGLRCAAEYLEMT
Sbjct: 71  LSRVIYESHDPDLNKIVIDDIPGGAEAFELAAKFCYGIAVDLTAGNISGLRCAAEYLEMT 130

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           EDLEEGNLIFK EAFLSYVVLSSWRDSI+VLKSCEKLSPWAENLQIVRRCSESIAWKACA
Sbjct: 131 EDLEEGNLIFKAEAFLSYVVLSSWRDSIVVLKSCEKLSPWAENLQIVRRCSESIAWKACA 190

Query: 121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
           NPKGIRW+YTGR  KISSPKWNDMKDSSPSR+Q VPPDWWFED SILRIDHFVRV+TAIK
Sbjct: 191 NPKGIRWSYTGRTAKISSPKWNDMKDSSPSRNQQVPPDWWFEDASILRIDHFVRVITAIK 250

Query: 181 VKGMRFELIGAAIMHYAAKWLTGLIRESSGTADE-ISSYSASNSNGSCSSWKGGLHMIVA 239
           VKGMRFEL+GA+IMHYA KWL GLI +++   DE  +   +++S+   SSWKGGLHM+V 
Sbjct: 251 VKGMRFELVGASIMHYATKWLPGLISDTAIPGDEASNCSMSNSSSSGGSSWKGGLHMVVT 310

Query: 240 GMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKR 299
           G KDD  ++QAK+QRMIIESL+SIIPPQKDSVSCSFLLRLLRMA MLKVAPALVTELEKR
Sbjct: 311 GTKDDTSSLQAKEQRMIIESLVSIIPPQKDSVSCSFLLRLLRMAIMLKVAPALVTELEKR 370

Query: 300 VGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDK-HMY 358
           VGMQFEQATLADLLIP+Y+KGET+YDVDLVQRLLEHF++QE TESSSPSRQSFSDK HM 
Sbjct: 371 VGMQFEQATLADLLIPSYNKGETMYDVDLVQRLLEHFIIQEHTESSSPSRQSFSDKQHM- 429

Query: 359 DASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAID 418
                G   +AK RVARLVD YLTEV+RDRNLSLTKFQVLAEALPESARTCDDGLYRAID
Sbjct: 430 ---GMGCILNAKARVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDGLYRAID 486

Query: 419 SYLK 422
           SYLK
Sbjct: 487 SYLK 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476259|ref|XP_003608415.1| Root phototropism protein [Medicago truncatula] gi|355509470|gb|AES90612.1| Root phototropism protein [Medicago truncatula]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/425 (80%), Positives = 371/425 (87%), Gaps = 8/425 (1%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           +NR++Y+SRD +LNKI +DDLPGGPEAFELAAKFCYG+A+DLTASNISGLRCAAEYLEMT
Sbjct: 71  LNRILYDSRDPDLNKIAMDDLPGGPEAFELAAKFCYGVAIDLTASNISGLRCAAEYLEMT 130

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           EDLEEGNLIFKTEAFLSYVVLSSWRDSI+VLKS EKLSPWAENLQIVRRCSESIAWKACA
Sbjct: 131 EDLEEGNLIFKTEAFLSYVVLSSWRDSIVVLKSSEKLSPWAENLQIVRRCSESIAWKACA 190

Query: 121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
           NPKGIRWAYTGR  K SSPKWN+MKDSSPSR+Q VPPDWWFEDVSILRIDHFVRV+TAIK
Sbjct: 191 NPKGIRWAYTGRATKASSPKWNEMKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIK 250

Query: 181 VKGMRFELIGAAIMHYAAKWLTGLIRESS---GTADEISSYSASNSNGSCSSWKGGLHMI 237
           VKGMRFELIGA IMHYA KWL GL    +   G     +S S+ +S  + SSW+GGLHMI
Sbjct: 251 VKGMRFELIGAGIMHYATKWLPGLAGNDTTIQGEETSNNSNSSFSSGDNNSSWRGGLHMI 310

Query: 238 VAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELE 297
           V+G +D+  T+Q KDQ+M+IESLISIIPPQKDSVSCSFLLRLLRMANMLKVA AL+T+LE
Sbjct: 311 VSGTRDETSTLQTKDQKMVIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAYALITDLE 370

Query: 298 KRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHM 357
           KRVGMQFEQATL+DLLIP Y K ET+YDVDLVQRLLEHFLVQEQTE  SPSRQS SD   
Sbjct: 371 KRVGMQFEQATLSDLLIPCYEKSETMYDVDLVQRLLEHFLVQEQTEGYSPSRQSLSDH-- 428

Query: 358 YDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAI 417
                 G+  +AK RVARLVD YLTEV+RDRNLS TKFQVLAEALPESAR  DDGLYRAI
Sbjct: 429 ---KNVGSNLNAKARVARLVDSYLTEVSRDRNLSSTKFQVLAEALPESARVSDDGLYRAI 485

Query: 418 DSYLK 422
           DSYLK
Sbjct: 486 DSYLK 490

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547450|ref|XP_003542125.1| PREDICTED: root phototropism protein 3-like [Glycine max]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/428 (82%), Positives = 384/428 (89%), Gaps = 3/428 (0%)

Query: 1   MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
           ++R+IYES D +LNKIV+DD+PGG EAFELAAKFCYGIAVDLTA NISGLRCAAEYLEMT
Sbjct: 71  LSRVIYESHDPDLNKIVMDDIPGGEEAFELAAKFCYGIAVDLTAGNISGLRCAAEYLEMT 130

Query: 61  EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
           EDLEEGNLIFK EAFLSYVVLSSWRDSI+VLKSCEKLSPWAENLQIVRRCSESIAWKACA
Sbjct: 131 EDLEEGNLIFKAEAFLSYVVLSSWRDSIVVLKSCEKLSPWAENLQIVRRCSESIAWKACA 190

Query: 121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
           NPKGIRW+YTGR  KISSPKWNDMKDSSPSR+Q VPPDWWFED SILRIDHFVRV+TAIK
Sbjct: 191 NPKGIRWSYTGRTAKISSPKWNDMKDSSPSRNQQVPPDWWFEDASILRIDHFVRVITAIK 250

Query: 181 VKGMRFELIGAAIMHYAAKWLTGLIRESSGTADE-ISSYSASNSNGSCSSWKGGLHMIVA 239
           VKGMRFEL+GA+IMHYA KWL GLI +++   DE  +   +++S+    SWK GLHM+V 
Sbjct: 251 VKGMRFELVGASIMHYATKWLPGLISDTATPGDEASNCSMSNSSSSGGGSWKSGLHMVVT 310

Query: 240 GMKDD-PPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEK 298
           G KDD   ++QAK+QRMIIESL+SIIPPQKDSVSCSFLLRLLRMA MLKVAPALVTELEK
Sbjct: 311 GTKDDNTSSLQAKEQRMIIESLVSIIPPQKDSVSCSFLLRLLRMAIMLKVAPALVTELEK 370

Query: 299 RVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDK-HM 357
           RVGMQFEQATLADLLIP+Y+KGET+YDVDLVQRLLEHF+VQEQTESSSPSR SFSDK HM
Sbjct: 371 RVGMQFEQATLADLLIPSYNKGETMYDVDLVQRLLEHFIVQEQTESSSPSRNSFSDKQHM 430

Query: 358 YDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYRAI 417
                 G   +AK RVARLVD YLTEV+RDRNLSLTKFQVLAEALPESARTCDDGLYRAI
Sbjct: 431 GMGMGMGCILNAKARVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDGLYRAI 490

Query: 418 DSYLKVIS 425
           DSYLKVIS
Sbjct: 491 DSYLKVIS 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
TAIR|locus:2173418	746	NPH3 "NON-PHOTOTROPIC HYPOCOTY	0.491	0.282	0.809	3.8e-168
TAIR|locus:2028160	665	AT1G30440 [Arabidopsis thalian	0.484	0.312	0.416	7.2e-77
TAIR|locus:2143558	592	AT5G03250 [Arabidopsis thalian	0.459	0.332	0.437	4.7e-74
TAIR|locus:2158182	579	NPY3 "NAKED PINS IN YUC MUTANT	0.454	0.336	0.463	5.9e-74
TAIR|locus:2046961	634	NPY2 "NAKED PINS IN YUC MUTANT	0.463	0.313	0.416	3.7e-69
TAIR|locus:2156524	614	AT5G48800 [Arabidopsis thalian	0.456	0.319	0.430	4.2e-69
TAIR|locus:504954965	604	AT5G67385 [Arabidopsis thalian	0.454	0.322	0.443	2e-68
TAIR|locus:2173204	591	AT5G13600 [Arabidopsis thalian	0.466	0.338	0.400	5.1e-68
TAIR|locus:2082132	651	AT3G44820 [Arabidopsis thalian	0.932	0.614	0.381	1.7e-66
TAIR|locus:2079296	588	AT3G26490 [Arabidopsis thalian	0.414	0.302	0.412	5.1e-64

TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 940 (336.0 bits), Expect = 3.8e-168, Sum P(2) = 3.8e-168
 Identities = 183/226 (80%), Positives = 197/226 (87%)

Query:     1 MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
             MNRLIYESRD +   ++LDDLPGGPEAFELA+KFCYG+ VDLTA+NISGLRCAAEYLEMT
Sbjct:    79 MNRLIYESRDPDPTILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMT 138

Query:    61 EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
             EDLEEGNLIFKTEAFLSYVVLSSWRDSI+VLKSCEKLSPWAENLQIVRRCSESIAWKAC+
Sbjct:   139 EDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACS 198

Query:   121 NPKGIRWAYTGRPPKIS-------SPKWNDMKDSS----PSR---SQPVPPDWWFEDVSI 166
             NPKGIRWAYTG+ P  S       SP+WN+ KDSS    PSR   SQPVPPDWWFEDVSI
Sbjct:   199 NPKGIRWAYTGKAPSPSTTNFAGSSPRWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSI 258

Query:   167 LRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTA 212
             LRIDHFVRV+TAIKVKGMRFEL+GA IMHYA KWL GLI+E  G A
Sbjct:   259 LRIDHFVRVITAIKVKGMRFELLGAVIMHYAGKWLPGLIKEG-GVA 303

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA;NAS

GO:0009416 "response to light stimulus" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009785 "blue light signaling pathway" evidence=IGI;IPI

GO:0016567 "protein ubiquitination" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009638 "phototropism" evidence=IMP

TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 7.2e-77, Sum P(2) = 7.2e-77
 Identities = 90/216 (41%), Positives = 133/216 (61%)

Query:     1 MNRLIYESRDSELNKIVLD--DLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLE 58
             M R I E+     +K +++  DLPGG + FEL AKFCYG+ ++LTASN+  LRCAAE+LE
Sbjct:    53 MERRIAEASKEGDDKCLIEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLE 112

Query:    59 MTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKA 118
             MTE+  EGNLI +TE F + VVL SW+DSI  L SC+++  +A+ L I ++C ES+A +A
Sbjct:   113 MTEEHGEGNLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRA 172

Query:   119 CANPKGIRWAYTGRPPKISSPK----WNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVR 174
               +P    W        + SP     WN +  S+ +R +    DWW+ED S+L    F R
Sbjct:   173 STDPNLFGWPVVEHGGPMQSPGGSVLWNGI--STGARPKHTSSDWWYEDASMLSFPLFKR 230

Query:   175 VVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSG 210
             ++T ++ +G+R ++I  ++ +Y  K L GL R   G
Sbjct:   231 LITVMESRGIREDIIAGSLTYYTRKHLPGLKRRRGG 266

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IEA;ISS

TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
 Identities = 91/208 (43%), Positives = 130/208 (62%)

Query:     1 MNRLIYESRDSELNKIVL--DDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLE 58
             + RLI ES   + +  VL  D++PGG + FEL  KFCYG+ ++LTA N+  LRCAAEYLE
Sbjct:    53 LERLIEESSTDDGSGCVLSLDEIPGGGKTFELVTKFCYGVKIELTAFNVVSLRCAAEYLE 112

Query:    59 MTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKA 118
             MT++  EGNL+  TE FL+ V   +W DSI  L++CE++  +AE+L I+ RC +S+A KA
Sbjct:   113 MTDNYGEGNLVGMTETFLNEV-FGNWTDSIKALQTCEEVIDYAEDLHIISRCVDSLAVKA 171

Query:   119 CANPKGIRW-------AYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDH 171
             CA+P    W       A +G+  +  S  WN +  +S    Q    DWWF+D S L +  
Sbjct:   172 CADPSLFNWPVGGGKNATSGQNTEDESHLWNGIS-ASGKMLQHTGEDWWFDDASFLSLPL 230

Query:   172 FVRVVTAIKVKGMRFELIGAAIMHYAAK 199
             F R++TAI+ +GM+ E I  A+M+Y  K
Sbjct:   231 FKRLITAIEARGMKLENIAMAVMYYTRK 258

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

TAIR|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
 Identities = 95/205 (46%), Positives = 133/205 (64%)

Query:    11 SELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIF 70
             S+ ++I + D+PGGP AFE+ AKFCYG+AV L A N+  +RCAAEYLEM E +E GNL++
Sbjct:    67 SDDDEIRIPDIPGGPPAFEICAKFCYGMAVTLNAYNVVAVRCAAEYLEMYESIENGNLVY 126

Query:    71 KTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYT 130
             K E FL+  VL SW+DSIIVL++     PW+E++++  RC ESIA KA  +P  + W+YT
Sbjct:   127 KMEVFLNSSVLRSWKDSIIVLQTTRSFYPWSEDVKLDVRCLESIALKAAMDPARVDWSYT 186

Query:   131 GRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKG-MRFELI 189
                 K+  P+ N+           VP DWW ED++ L ID F RVV+ I+ KG +  E+I
Sbjct:   187 YNRRKLLPPEMNN---------NSVPRDWWVEDLAELSIDLFKRVVSTIRRKGGVLPEVI 237

Query:   190 GAAIMHYAAKWLTGLIRESSGTADE 214
             G A+  YAAK + G + ++    DE
Sbjct:   238 GEALEVYAAKRIPGFMIQNDDNDDE 262

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

GO:0009908 "flower development" evidence=IGI

GO:0009958 "positive gravitropism" evidence=IGI

GO:0071944 "cell periphery" evidence=IDA

TAIR|locus:2046961 NPY2 "NAKED PINS IN YUC MUTANTS 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 3.7e-69, Sum P(2) = 3.7e-69
 Identities = 85/204 (41%), Positives = 128/204 (62%)

Query:     1 MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
             + +L+  +  + ++ I +  +PGGP AFE  AKFCYG+ V L+A N+   RCAAEYL M 
Sbjct:    54 LQKLLSSTDKNNIDDIDISGIPGGPTAFETCAKFCYGMTVTLSAYNVVATRCAAEYLGMH 113

Query:    61 EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
             E +E+GNLI+K + FLS  +  SW+DSIIVL++ +   P +E+L++V  C ++IA KAC 
Sbjct:   114 ETVEKGNLIYKIDVFLSSSLFRSWKDSIIVLQTTKPFLPLSEDLKLVSLCIDAIATKACV 173

Query:   121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
             +   + W+YT    K++    N+  DS  +R   VP DWW ED+  L ID++ RV+  IK
Sbjct:   174 DVSHVEWSYTYNKKKLAEE--NNGADSIKARD--VPHDWWVEDLCELEIDYYKRVIMNIK 229

Query:   181 VKG-MRFELIGAAIMHYAAKWLTG 203
              K  +  E+IG A+  Y  + L+G
Sbjct:   230 TKCILGGEVIGEALKAYGYRRLSG 253

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

GO:0009958 "positive gravitropism" evidence=IGI

GO:0071944 "cell periphery" evidence=IDA

TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
 Identities = 87/202 (43%), Positives = 130/202 (64%)

Query:     1 MNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60
             + R++ E RDS+++K+ L +LPGG E FELAAKFCYGI  ++T+SN++ L C ++YLEMT
Sbjct:    68 IRRIVAEHRDSDISKVELLNLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMT 127

Query:    61 EDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 120
             E+  + NL  +TE +L  +V  +    + VLK  E L P A+ L I+ RC ++IA KACA
Sbjct:   128 EEYSKDNLASRTEEYLESIVCKNLEMCVQVLKQSEILLPLADELNIIGRCIDAIASKACA 187

Query:   121 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK 180
                 I  +++ R    SS +   +  S   +S     DWW ED+S+LRID + RV+ A+K
Sbjct:   188 EQ--IASSFS-RLEYSSSGR---LHMSRQVKSSGDGGDWWIEDLSVLRIDLYQRVMNAMK 241

Query:   181 VKGMRFELIGAAIMHYAAKWLT 202
              +G+R E IGA+++ YA + LT
Sbjct:   242 CRGVRPESIGASLVSYAERELT 263

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IEA;ISS

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 2.0e-68, Sum P(2) = 2.0e-68
 Identities = 91/205 (44%), Positives = 127/205 (61%)

Query:     1 MNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEM 59
             + +L+ ES +DS+   I + D+PGG EAFELAAKFCYGI  D++  NI+ LRCAAEYLEM
Sbjct:    52 IKKLVSESSKDSDSTVIKIPDIPGGSEAFELAAKFCYGINFDMSTENIAMLRCAAEYLEM 111

Query:    60 TEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKAC 119
             TE+    NL+ + EA+L+ V L S   SI VL   EKL P AE +++V RC ++IA+  C
Sbjct:   112 TEEHSVENLVVRAEAYLNEVALKSLSSSITVLHKSEKLLPIAERVKLVSRCIDAIAYMTC 171

Query:   120 ANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAI 179
                     ++   P   +S   N++     S+ QPV  DWW ED+++LRID F RV+ A+
Sbjct:   172 QE------SHFCSPSSSNSGN-NEVVVQQQSK-QPVV-DWWAEDLTVLRIDSFQRVLIAM 222

Query:   180 KVKGMRFELIGAAIMHYAAKWLTGL 204
               +G +   +G  +M YA K L GL
Sbjct:   223 MARGFKQYGLGPVLMLYAQKSLRGL 247

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 5.1e-68, Sum P(2) = 5.1e-68
 Identities = 87/217 (40%), Positives = 125/217 (57%)

Query:     8 SRDSELNKIV-LDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEG 66
             S+ SE   +  L D+PGGPE F L AKFCYG+ +++T  N   LRCAAEYL+M+E+  + 
Sbjct:    58 SKASETTCVAQLHDIPGGPETFLLVAKFCYGVRIEVTPENAVSLRCAAEYLQMSENYGDA 117

Query:    67 NLIFKTEAFLSYVVLSSWRDSIIVL-KSCE-KLSPWAENLQIVRRCSESIAWKACA--NP 122
             NLI+ TE+FL+  V  +W DSI  L KSCE K+ P AE L IV RC  S+A KACA  N 
Sbjct:   118 NLIYLTESFLNDHVFVNWEDSIKALEKSCEPKVLPLAEELHIVSRCIGSLAMKACAEDNT 177

Query:   123 KGIRWAYTGRPPKISSPK--WNDMKDSSPSRSQPVPPDWWFEDVS-ILRIDHFVRVVTAI 179
                 W  +  P   ++    WN ++  + S +      WWF DVS  L +  + R +  +
Sbjct:   178 SFFNWPIS-LPEGTTTTTIYWNGIQTKATSEN------WWFNDVSSFLDLPMYKRFIKTV 230

Query:   180 KVKGMRFELIGAAIMHYAAKWLT--GLIRESSGTADE 214
             + +G+   +I A++ HYA + L   G  R+S   ++E
Sbjct:   231 ESRGVNAGIIAASVTHYAKRNLPLLGCSRKSGSPSEE 267

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 163/427 (38%), Positives = 237/427 (55%)

Query:     3 RLIYESRDSELNKI---VLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEM 59
             R+  +S+ ++   +   VL++ PGG + F + A+FCYG  VD+T+ N+  + CAAEYLEM
Sbjct:    52 RMYEDSKSTDKQSLWTTVLEEFPGGADNFLIVARFCYGARVDITSKNLVSIHCAAEYLEM 111

Query:    60 TEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKAC 119
             T +  E NLI + E FL   VL +W+D I+ L+S   +   AE LQ++ +   +++   C
Sbjct:   112 TNEYGEDNLISQVETFLHKHVLRNWKDCILALQSSSPVLKSAEKLQMIPKLMNAVSTMVC 171

Query:   120 ANPKGIRWA---Y-TGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRV 175
              +P    W    Y T + P   S  WN +   +  RS     DWW+ED+S L +D F R+
Sbjct:   172 TDPSLFGWPMMMYGTLQSPG-GSILWNGINTGARMRSSG--SDWWYEDISYLSVDLFKRL 228

Query:   176 VTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEIXXXXXXXXXXXXXXWKGGLH 235
             +  ++ KG+R E +  A+M+YA K+L GL R  SGT+D                     +
Sbjct:   229 IKTMETKGIRAESLAGAMMYYARKYLPGLGRWQSGTSDSSKSRRRVVS----------FN 278

Query:   236 MIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTE 295
             +  A     P ++   DQ  ++E+++S++P ++    C FLL LLR+A +L V    V +
Sbjct:   279 LAKAS---SPSSMPPLDQIALLETILSLLPEKRGRSFCKFLLGLLRVAFILGVDGNCVKK 335

Query:   296 LEKRVGMQFEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDK 355
             LEKR+GMQ E ATL +LLI  YS  ETLY+VD V+R++ HF+      SSS     FS  
Sbjct:   336 LEKRIGMQLELATLDNLLILNYSDSETLYNVDCVERIVRHFV--SSLSSSSSQLPEFSPP 393

Query:   356 HMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCDDGLYR 415
              + D     +    K +VA LVD Y+ EVA D NL   K + LA ALPES+R   DGLYR
Sbjct:   394 SL-DPVTSPSPAPLK-KVANLVDSYMAEVASDVNLKPDKMRSLAAALPESSRPLYDGLYR 451

Query:   416 AIDSYLK 422
             A D Y K
Sbjct:   452 AFDIYFK 458

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

TAIR|locus:2079296 AT3G26490 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 5.1e-64, Sum P(2) = 5.1e-64
 Identities = 80/194 (41%), Positives = 128/194 (65%)

Query:   246 PTVQ--AKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQ 303
             P++Q  + D  +++ES+IS++P +K SV CSFLL+LL+MAN++ V+ +   EL  + G Q
Sbjct:   264 PSIQESSADSNLVLESVISLLPEEKSSVPCSFLLQLLKMANVMNVSHSSKMELAIKAGNQ 323

Query:   304 FEQATLADLLIPAYSKGETLYDVDLVQRLLEHFLVQ-----EQTESSSPSRQSFSDKHM- 357
              ++AT+++LLIP   K   LYDVD+V+ +++ FL         T + +  R+S S++++ 
Sbjct:   324 LDKATVSELLIPLSDKSGMLYDVDVVKMMVKQFLSHISPEIRPTRTRTEHRRSRSEENIN 383

Query:   358 YDASQ--RGN-GTSAK-----MRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTC 409
              +  Q  RG+  TS+       +VA+LVD YL E+ARD NL+++KF  LAE +P+++R C
Sbjct:   384 LEEIQEVRGSLSTSSSPPPLLSKVAKLVDSYLQEIARDVNLTVSKFVELAETIPDTSRIC 443

Query:   410 DDGLYRAIDSYLKV 423
              D LY AID YL+V
Sbjct:   444 HDDLYNAIDVYLQV 457

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMF5	RPT3_ARATH	No assigned EC number	0.7169	0.9813	0.5643	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	429
pfam03000	249	pfam03000, NPH3, NPH3 family	1e-101

>gnl|CDD|217312 pfam03000, NPH3, NPH3 family

 Score =  301 bits (773), Expect = e-101
 Identities = 122/268 (45%), Positives = 163/268 (60%), Gaps = 46/268 (17%)

Query: 157 PDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEIS 216
            DWWFED+S L ID F RV+TA+K +G++ E+IG A+MHYA KWL GL R  S   D   
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSRSGSSEED--- 57

Query: 217 SYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFL 276
                                             ++QR ++E+++S++P +K SVSCSFL
Sbjct: 58  --------------------------------SEEEQRALLETIVSLLPSEKGSVSCSFL 85

Query: 277 LRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPA-YSKGETLYDVDLVQRLLEH 335
            +LLR A +L  + +   ELE+R+G+Q +QATL DLLIP+ YS  ETLYDVDLVQR+LE 
Sbjct: 86  FKLLRAAIILGASESCREELERRIGLQLDQATLDDLLIPSGYSGEETLYDVDLVQRILEV 145

Query: 336 FLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKF 395
           FL ++    SS            + S+    +S+ ++VA+LVDGYL E+A D NL L+KF
Sbjct: 146 FLSRDAATQSSDD----------EDSEASPSSSSLLKVAKLVDGYLAEIAPDPNLKLSKF 195

Query: 396 QVLAEALPESARTCDDGLYRAIDSYLKV 423
             LAEA+P+SAR   DGLYRAID YLK 
Sbjct: 196 IALAEAVPDSARPSHDGLYRAIDIYLKA 223

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	429
PF03000	258	NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr	100.0
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	97.38
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	97.04
PHA03098	534	kelch-like protein; Provisional	96.63
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.58
PHA02713	557	hypothetical protein; Provisional	93.97
PHA02790	480	Kelch-like protein; Provisional	93.42
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	85.73

>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana

Probab=100.00  E-value=6e-84  Score=628.56  Aligned_cols=236  Identities=54%  Similarity=0.874  Sum_probs=204.6

Q ss_pred             CCcchhhcccCChhhHHHHHHHHHHhCCChhhHHHHHHHHHHhhhccccccCCCCcccccccccCCCCCCCCCCCCCcce
Q 014182          157 PDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHM  236 (429)
Q Consensus       157 ~dWW~eDl~~L~~~lf~rvI~am~s~g~~~~~i~~~l~~Ya~r~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (429)
                      +|||||||+.|++++|+|||.+|+++||+|++||++|++||+||||++++.......                       
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~-----------------------   57 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSS-----------------------   57 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccc-----------------------
Confidence            589999999999999999999999999999999999999999999998654221100                       


Q ss_pred             eecCCCCCCchhhhhhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcccCcccccccc
Q 014182          237 IVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPA  316 (429)
Q Consensus       237 ~~~~~~~~~~~~~~~~qr~llEtiv~LLP~ek~~vsc~FL~~LLR~A~~l~as~~cr~~LE~RIg~QLe~AtldDLLIPs  316 (429)
                           ..........+||.+||+||+|||.||++|||+|||+|||+|+++++|+.||.+||+|||+|||||||+|||||+
T Consensus        58 -----~~~~~~~~~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~  132 (258)
T PF03000_consen   58 -----SAESSTSSENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS  132 (258)
T ss_pred             -----cccccchhHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC
Confidence                 011223345699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCCCcccchHHHHHHHHHHHhcccccCCCCCccccccccccccccCCCCchhHHHHHHhhhhhhhhccCCCCCChhHH
Q 014182          317 Y-SKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKF  395 (429)
Q Consensus       317 ~-~~~~tlYDVd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEVA~D~nL~~~KF  395 (429)
                      . +..+|+||||+|+|||++||.+++..+......        ......++.+++.+||||||+||+|||+|+||+|+||
T Consensus       133 ~~~~~~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF  204 (258)
T PF03000_consen  133 SPSGEDTLYDVDLVQRIVEHFLSQEEEAGEEEESE--------SESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKF  204 (258)
T ss_pred             CCCcccchhhHHHHHHHHHHHHhcccccccccccc--------cccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence            4 466699999999999999999866533110000        0011246778999999999999999999999999999


Q ss_pred             HHHHHhcCCCcccCCCChhHHHHHhhhhcCCCC
Q 014182          396 QVLAEALPESARTCDDGLYRAIDSYLKVISNFC  428 (429)
Q Consensus       396 ~~LAe~lPd~aR~~hDgLYRAIDiYLK~Hp~l~  428 (429)
                      ++|||++|++||++|||||||||||||+||+|.
T Consensus       205 ~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls  237 (258)
T PF03000_consen  205 VALAEALPDSARPSHDGLYRAIDIYLKAHPGLS  237 (258)
T ss_pred             HHHHHHCCHhhhhccchHHHHHHHHHHHcccCC
Confidence            999999999999999999999999999999974

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=97.38  E-value=0.00021  Score=59.50  Aligned_cols=69  Identities=29%  Similarity=0.430  Sum_probs=57.9

Q ss_pred             hhhhcccc--CCCcceEEccCCCCCHHHHHHHHHhhcCcccccC-chhHHHHHhhHHhhcCcccccCCChHHHHHHHhhh
Q 014182            2 NRLIYESR--DSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLT-ASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSY   78 (429)
Q Consensus         2 ~klv~~~~--~~~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt-~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~   78 (429)
                      ++++...+  +....+|.+.+++  +++|+...+|||+..+.++ ..|+..+...|.+++|.      .|...++.||.+
T Consensus        38 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~------~L~~~~~~~l~~  109 (111)
T PF00651_consen   38 RNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIP------ELKKACEKFLQE  109 (111)
T ss_dssp             HHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBH------HHHHHHHHHHHH
T ss_pred             hhccccccccccccccccccccc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcH------HHHHHHHHHHHh
Confidence            34455442  2333578889998  8899999999999999998 99999999999999999      699999999976

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=97.04  E-value=0.0008  Score=52.45  Aligned_cols=48  Identities=33%  Similarity=0.507  Sum_probs=43.1

Q ss_pred             CcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcc
Q 014182           12 ELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTE   61 (429)
Q Consensus        12 ~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE   61 (429)
                      ....+.+.|  -.+++|+.+-+|||+.++.+++.|+..+..+|+|++|.+
T Consensus        37 ~~~~i~l~~--~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~   84 (90)
T smart00225       37 KKSEIYLDD--VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPG   84 (90)
T ss_pred             CCCEEEecC--CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHH
Confidence            356777776  569999999999999999999999999999999999985

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PHA03098 kelch-like protein; Provisional

Probab=96.63  E-value=0.0078  Score=64.24  Aligned_cols=88  Identities=17%  Similarity=0.234  Sum_probs=70.2

Q ss_pred             cceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhhcCChHHHHHHHh
Q 014182           13 LNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLK   92 (429)
Q Consensus        13 ~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~vl~sW~dsi~vL~   92 (429)
                      ..+|+|++   -+++|+.+.+|-|.++++|+..||..|--||.+|+|.+      |....+.||.+.+-         ..
T Consensus        47 ~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~~~l~~~l~---------~~  108 (534)
T PHA03098         47 ENEINLNI---DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCINYIIKIID---------DN  108 (534)
T ss_pred             CceEEecC---CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHhCC---------Hh
Confidence            45788877   78999999999999999999999999999999999994      99999999987542         33


Q ss_pred             hhhccchhhhhh---chHHHHHHHHHHHH
Q 014182           93 SCEKLSPWAENL---QIVRRCSESIAWKA  118 (429)
Q Consensus        93 sce~llp~AE~l---~Iv~RCidala~ka  118 (429)
                      .|-.++..|+..   .+.+.|.+-|+...
T Consensus       109 nc~~~~~~a~~~~~~~L~~~~~~~i~~nf  137 (534)
T PHA03098        109 NCIDIYRFSFFYGCKKLYSAAYNYIRNNI  137 (534)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            455555666653   46667777766543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.58  E-value=0.038  Score=60.55  Aligned_cols=185  Identities=19%  Similarity=0.272  Sum_probs=118.5

Q ss_pred             CCCcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhhcCC---hHH
Q 014182           10 DSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSS---WRD   86 (429)
Q Consensus        10 ~~~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~vl~s---W~d   86 (429)
                      +....+|+|.+  .-++++++...|+|.++++|+-.||--|--||.+|+|++      +..-.-.||.+.+..+   +--
T Consensus        72 e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l~~~Nclgi~  143 (571)
T KOG4441|consen   72 ESKQKEINLEG--VDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDACCEFLESQLDPSNCLGIR  143 (571)
T ss_pred             cccceEEEEec--CCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcCCHHHHHHHH
Confidence            45667899999  778999999999999999999999999999999999995      7778888888765322   011


Q ss_pred             HHHHHhhhhccchhhhhhchHHHHHHHHHHHHccCCCCccccccCCCCCCCCCCcCcCCCCCCCCCCCCCCCcchhhccc
Q 014182           87 SIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSI  166 (429)
Q Consensus        87 si~vL~sce~llp~AE~l~Iv~RCidala~ka~~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~  166 (429)
                      .++-+.+|..|...|.+ .|.+..++-                                             |=-||--.
T Consensus       144 ~~a~~~~~~~L~~~a~~-~i~~~F~~v---------------------------------------------~~~eefl~  177 (571)
T KOG4441|consen  144 RFAELHSCTELLEVADE-YILQHFAEV---------------------------------------------SKTEEFLL  177 (571)
T ss_pred             HHHHhcCcHHHHHHHHH-HHHHHHHHH---------------------------------------------hccHHhhC
Confidence            22223455555544433 112211110                                             11156666


Q ss_pred             CChhhHHHHHHHHHHhCCChhhHHHHHHHHHHhhhccccccCCCCcccccccccCCCCCCCCCCCCCcceeecCCCCCCc
Q 014182          167 LRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPP  246 (429)
Q Consensus       167 L~~~lf~rvI~am~s~g~~~~~i~~~l~~Ya~r~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (429)
                      |+.+.+..+|..-.-..-+++.+.++++.+.+.-.                                             
T Consensus       178 L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~---------------------------------------------  212 (571)
T KOG4441|consen  178 LSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDF---------------------------------------------  212 (571)
T ss_pred             CCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCH---------------------------------------------
Confidence            88777777766544443466666666655544211                                             


Q ss_pred             hhhhhhhHHHHHHHHHh-CCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014182          247 TVQAKDQRMIIESLISI-IPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV  300 (429)
Q Consensus       247 ~~~~~~qr~llEtiv~L-LP~ek~~vsc~FL~~LLR~A~~l~as~~cr~~LE~RI  300 (429)
                         ..+++.+.+-...+ +|.    ++-.||.......-.+...+.||.-|..=.
T Consensus       213 ---~~R~~~~~~ll~~vr~~l----l~~~~l~~~v~~~~~~~~~~~c~~~l~ea~  260 (571)
T KOG4441|consen  213 ---EEREEHLPALLEAVRLPL----LPPQFLVEIVESEPLIKRDSACRDLLDEAK  260 (571)
T ss_pred             ---hhHHHHHHHHHHhcCccC----CCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence               01122222221111 233    788999999999999999999988875533

>PHA02713 hypothetical protein; Provisional

Probab=93.97  E-value=0.14  Score=55.73  Aligned_cols=58  Identities=16%  Similarity=0.352  Sum_probs=52.0

Q ss_pred             cceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhh
Q 014182           13 LNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV   80 (429)
Q Consensus        13 ~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~v   80 (429)
                      ..+|+|.++  .+++|+.+.+|.|.++  |++.||-.|--||.+|+|+      .|....+.||.+.+
T Consensus        66 ~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~------~l~~~C~~~l~~~l  123 (557)
T PHA02713         66 VTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLID------DLVTDCESYIKDYT  123 (557)
T ss_pred             CceEEeccC--CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHH------HHHHHHHHHHHhhC
Confidence            467999887  4899999999999876  7999999999999999999      48999999998765

>PHA02790 Kelch-like protein; Provisional

Probab=93.42  E-value=0.088  Score=56.15  Aligned_cols=61  Identities=13%  Similarity=0.078  Sum_probs=52.4

Q ss_pred             eEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhhc
Q 014182           15 KIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVL   81 (429)
Q Consensus        15 ~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~vl   81 (429)
                      +|.|...--.+++++.+.+|-|.++++||..||-.+-.||.||+|+      -++.....||.+.+-
T Consensus        61 ~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~------~v~~~C~~fL~~~l~  121 (480)
T PHA02790         61 PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVE------FIIYTCINFILRDFR  121 (480)
T ss_pred             ceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChH------HHHHHHHHHHHhhCC
Confidence            4555322335899999999999999999999999999999999999      488999999998663

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=85.73  E-value=0.44  Score=48.71  Aligned_cols=49  Identities=22%  Similarity=0.354  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhh
Q 014182           24 GPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSY   78 (429)
Q Consensus        24 GaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~   78 (429)
                      .-..||.-.+++.|-...|||.||+++---++||+|++      |++.+=.|...
T Consensus        54 Dv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~------Lve~cl~y~~~  102 (317)
T PF11822_consen   54 DVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES------LVEECLQYCHD  102 (317)
T ss_pred             ChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH------HHHHHHHHHHH
Confidence            34789999999999999999999999999999999994      77787777644

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	429
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 88/548 (16%), Positives = 155/548 (28%), Gaps = 159/548 (29%)

Query: 5   IYESRDSELN-KIVLDDLPGGPEAFELAAKFC-------YG-IAVDLTASNISGLRCAAE 55
           I  S+D+      +   L    E  E+  KF        Y  +   +             
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 56  YLEMTEDLEEGNLIFKTEAFLSYVVLSSWR-DSIIVLKSC-EKLSPWAENLQI--VRRCS 111
           Y+E  + L   N     + F  Y V    R    + L+    +L P A+N+ I  V    
Sbjct: 112 YIEQRDRLYNDN-----QVFAKYNV---SRLQPYLKLRQALLELRP-AKNVLIDGVLGSG 162

Query: 112 ESI-AWKACANPK-------GIRWAYTGRPPKISS-------------PKWNDMKDSSPS 150
           ++  A   C + K        I W          +             P W    D S +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 151 RSQPVPPDWWFEDVS-------------ILR-------IDHF-----VRVVTAIKVKGMR 185
               +       ++              +L         + F     + + T  + K + 
Sbjct: 223 --IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--RFKQVT 278

Query: 186 FELIGAAIMHYAAKWLTGLIRESSG-TADEISSYSASNSNGSCSS-----WKGG---LHM 236
             L  A   H +      L   S   T DE+ S      +                 L +
Sbjct: 279 DFLSAATTTHIS------LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 237 IVAGMKDDPPT------VQAKDQRMIIESLISIIPP---QKDSVSCS-F---------LL 277
           I   ++D   T      V       IIES ++++ P   +K     S F         LL
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 278 RLLRMANMLKVAPALVTELEKRV--------------GMQFE-------QATLADLLIPA 316
            L+    +      +V +L K                 +  E       +  L   ++  
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 317 YSKGETLYDVDLVQRLLE---------HFLVQEQTESSSPSRQSFSDKHMYDASQRGNGT 367
           Y+  +T    DL+   L+         H    E  E  +  R  F D    +   R + T
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 368 SAKMRVA--------RLVDGYLT--EVARDRNL-SLTKF-QVLAEALPESARTC------ 409
           +     +        +    Y+   +   +R + ++  F   + E L  S  T       
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572

Query: 410 ---DDGLY 414
              D+ ++
Sbjct: 573 MAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 59/445 (13%), Positives = 126/445 (28%), Gaps = 152/445 (34%)

Query: 28  FELAA-KFCYG-IAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWR 85
           FE    ++ Y  I      + +    C     +  +D+ +   I   E            
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDC-----KDVQDMPKS--ILSKEEI---------- 51

Query: 86  DSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGI------------------RW 127
           D II+ K           +    R    + W   +  + +                    
Sbjct: 52  DHIIMSKD---------AVSGTLR----LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 128 AYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIK------- 180
               R P + +  + + +D   + +Q         +VS  R+  ++++  A+        
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY----NVS--RLQPYLKLRQALLELRPAKN 152

Query: 181 --VKGMRFELIGAAIMHYAAK-WLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMI 237
             + G+    +G      + K W+           D   SY               +  +
Sbjct: 153 VLIDGV----LG------SGKTWV---------ALDVCLSYKVQCKMD------FKIFWL 187

Query: 238 VAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELE 297
                + P     +    +++ L+  I P       ++  R    +N+       +  ++
Sbjct: 188 NLKNCNSP-----ETVLEMLQKLLYQIDP-------NWTSRSDHSSNI----KLRIHSIQ 231

Query: 298 KRVGMQFEQATLAD-LLIPAYSKGETLYDV-DLVQRLLEHFLVQEQ---TESSSPSRQSF 352
             +    +     + LL+        L +V +   +    F +  +   T     +R   
Sbjct: 232 AELRRLLKSKPYENCLLV--------LLNVQN--AKAWNAFNLSCKILLT-----TR--- 273

Query: 353 SDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSL-TKF-QVLAEALPESARTCD 410
             K + D       T+  + +       LT    D   SL  K+     + LP    T +
Sbjct: 274 -FKQVTDF--LSAATTTHISLDHHSMT-LTP---DEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 411 ------------DGLYRAIDSYLKV 423
                       DGL    D++  V
Sbjct: 327 PRRLSIIAESIRDGLAT-WDNWKHV 350

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 35/206 (16%), Positives = 72/206 (34%), Gaps = 44/206 (21%)

Query: 251 KDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLA 310
           KD   I+           D+  C  +  + +  ++L        E++  +  +   +   
Sbjct: 19  KD---ILSVFE---DAFVDNFDCKDVQDMPK--SILSKE-----EIDHIIMSKDAVSGTL 65

Query: 311 DLLIPAYSKGETLYDVDLVQRLLE---HFLVQE-QTESSSPS--RQSFSDKHMYDASQRG 364
            L     SK E +     V+ +L     FL+   +TE   PS   + + ++   D     
Sbjct: 66  RLFWTLLSKQEEMVQ-KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYND 122

Query: 365 NGTSAKMRVARL-----VDGYLTEVARDRNLSLT------KFQVLA-EALPESARTC--D 410
           N   AK  V+RL     +   L E+   +N+ +       K   +A +        C  D
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMD 181

Query: 411 DGLY-------RAIDSYLKVISNFCY 429
             ++        + ++ L+++    Y
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLY 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	429
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	98.29
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	97.79
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	97.73
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	97.6
2vpk_A	116	Myoneurin; transcription regulation, transcription	97.59
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	97.58
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	97.56
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	97.55
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	97.54
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	97.53
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	97.5
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	97.5
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	97.45
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	97.36
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	97.35
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	97.34
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	97.2
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	96.98
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	96.86
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	96.81
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	93.72
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	93.1
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	87.59
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	84.13

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=98.29  E-value=1.8e-06  Score=82.96  Aligned_cols=183  Identities=10%  Similarity=0.160  Sum_probs=124.6

Q ss_pred             CCcceEEccCC----CCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhhcCChHH
Q 014182           11 SELNKIVLDDL----PGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRD   86 (429)
Q Consensus        11 ~~~~~i~L~d~----PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~vl~sW~d   86 (429)
                      +...+|.|+++    .-.+++|+.+.+|+|++++++++.||..+..||.+|+|.      .|....+.||.+.+-.    
T Consensus        72 ~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~------~L~~~c~~~L~~~l~~----  141 (279)
T 3i3n_A           72 SRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLI------RLKEFCGEFLKKKLHL----  141 (279)
T ss_dssp             ----EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCH------HHHHHHHHHHHHHCCT----
T ss_pred             ccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcH------HHHHHHHHHHHHcCCc----
Confidence            44568999877    457899999999999999999999999999999999998      5999999999885532    


Q ss_pred             HHHHHhhhhccchhhhhhc---hHHHHHHHHHHHHccCCCCccccccCCCCCCCCCCcCcCCCCCCCCCCCCCCCcchhh
Q 014182           87 SIIVLKSCEKLSPWAENLQ---IVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFED  163 (429)
Q Consensus        87 si~vL~sce~llp~AE~l~---Iv~RCidala~ka~~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eD  163 (429)
                           .+|-.++.+|+..+   +.++|.+-|......    +                                 +--++
T Consensus       142 -----~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~----v---------------------------------~~~~~  179 (279)
T 3i3n_A          142 -----SNCVAIHSLAHMYTLSQLALKAADMIRRNFHK----V---------------------------------IQDEE  179 (279)
T ss_dssp             -----TTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHH----H---------------------------------TTSSG
T ss_pred             -----chHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----H---------------------------------hcCcC
Confidence                 24555566666644   677888777654311    1                                 00145


Q ss_pred             cccCChhhHHHHHHHHHHhC--C-ChhhHHHHHHHHHHhhhccccccCCCCcccccccccCCCCCCCCCCCCCcceeecC
Q 014182          164 VSILRIDHFVRVVTAIKVKG--M-RFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAG  240 (429)
Q Consensus       164 l~~L~~~lf~rvI~am~s~g--~-~~~~i~~~l~~Ya~r~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (429)
                      ...|+.+....++.   +..  + +.+.|-++++.|++.-.+                                      
T Consensus       180 f~~L~~~~l~~lL~---~d~L~v~sE~~vf~av~~W~~~~~~--------------------------------------  218 (279)
T 3i3n_A          180 FYTLPFHLIRDWLS---DLEITVDSEEVLFETVLKWVQRNAE--------------------------------------  218 (279)
T ss_dssp             GGGSCHHHHHHHHT---CSSCCCSCHHHHHHHHHHHHHTTHH--------------------------------------
T ss_pred             hhcCCHHHHHHHhc---CcCCCCCCHHHHHHHHHHHHHcCHH--------------------------------------
Confidence            66788887777664   333  3 455677777766553111                                      


Q ss_pred             CCCCCchhhhhhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014182          241 MKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKR  299 (429)
Q Consensus       241 ~~~~~~~~~~~~qr~llEtiv~LLP~ek~~vsc~FL~~LLR~A~~l~as~~cr~~LE~R  299 (429)
                                 ..+..+..+...+  .=..+|..+|..+++..-.+..++.|+.-|..-
T Consensus       219 -----------~r~~~~~~ll~~V--Rf~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea  264 (279)
T 3i3n_A          219 -----------ERERYFEELFKLL--RLSQMKPTYLTRHVKPERLVANNEVCVKLVADA  264 (279)
T ss_dssp             -----------HHTTTHHHHHTTS--CGGGSCHHHHHHTTTTSHHHHTCHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHhc--CCCCCCHHHHHHHhhccchhcCCHHHHHHHHHH
Confidence                       1112233333332  114488999999998888888899998876543

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=97.79  E-value=2e-05  Score=64.76  Aligned_cols=58  Identities=26%  Similarity=0.340  Sum_probs=53.3

Q ss_pred             ceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhh
Q 014182           14 NKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYV   79 (429)
Q Consensus        14 ~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~   79 (429)
                      .+|.|+|++  +++|+...+|+|++++.+++.|+..+..+|++++|.      .|...++.||.+.
T Consensus        51 ~~i~l~~~~--~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~------~L~~~c~~~l~~~  108 (109)
T 2vkp_A           51 SEIHIPDVE--PAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVP------ALAKACVNFLETS  108 (109)
T ss_dssp             CEEEETTSC--HHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHHHHHH
T ss_pred             CeEEeCCCC--HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcH------HHHHHHHHHHHhh
Confidence            688888874  899999999999999999999999999999999999      5999999999763

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=97.73  E-value=3.6e-05  Score=64.93  Aligned_cols=60  Identities=25%  Similarity=0.365  Sum_probs=54.8

Q ss_pred             CcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhh
Q 014182           12 ELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYV   79 (429)
Q Consensus        12 ~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~   79 (429)
                      +..+|.|+|++  +++|+...+|+|++++.+++.|+..+..||++++|.      .|....+.||.+.
T Consensus        61 ~~~~i~l~~~~--~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~------~L~~~c~~~l~~~  120 (121)
T 1buo_A           61 NSQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIE------YLEEQCLKMLETI  120 (121)
T ss_dssp             CCSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCH------HHHHHHHHHHHHH
T ss_pred             CCcEEEeCCCC--HHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHh
Confidence            35688998886  899999999999999999999999999999999998      5999999999874

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=97.60  E-value=6.2e-05  Score=63.80  Aligned_cols=59  Identities=27%  Similarity=0.505  Sum_probs=53.2

Q ss_pred             CcceEEc-cCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhh
Q 014182           12 ELNKIVL-DDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSY   78 (429)
Q Consensus        12 ~~~~i~L-~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~   78 (429)
                      ....|.| +++  .+++|+.+.+|+|.+++.+++.|+..|..+|++++|.      .|....+.||.+
T Consensus        66 ~~~~i~l~~~~--~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~------~L~~~c~~~l~~  125 (127)
T 1r29_A           66 NLSVINLDPEI--NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQME------HVVDTCRKFIKA  125 (127)
T ss_dssp             TCSEEECCTTS--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHHHHT
T ss_pred             CCCEEEeCCCC--CHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHh
Confidence            4568888 676  4899999999999999999999999999999999999      589999999875

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=97.59  E-value=5.3e-05  Score=63.19  Aligned_cols=58  Identities=22%  Similarity=0.412  Sum_probs=50.3

Q ss_pred             cceEEcc--CCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhh
Q 014182           13 LNKIVLD--DLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSY   78 (429)
Q Consensus        13 ~~~i~L~--d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~   78 (429)
                      ...|.|+  |+  .+++|+...+|+|++++.+++.||..+..||++++|.      .|....+.||.+
T Consensus        57 ~~~i~l~~~~~--~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~------~L~~~C~~~l~~  116 (116)
T 2vpk_A           57 ENNVFLDQSQV--KADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVE------EVVTKCKIKMED  116 (116)
T ss_dssp             CSCEECCTTTC--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHHHC-
T ss_pred             CCeEEeecCCC--CHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCH------HHHHHHHHHHhC
Confidence            3456665  55  5899999999999999999999999999999999998      589999999853

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=97.58  E-value=3.3e-05  Score=65.05  Aligned_cols=59  Identities=24%  Similarity=0.204  Sum_probs=51.9

Q ss_pred             cceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhh
Q 014182           13 LNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYV   79 (429)
Q Consensus        13 ~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~   79 (429)
                      ..+|.|+|++  +++|+...+|+|++++++++.|+..|..||++++|.      .|....+.||.+.
T Consensus        59 ~~~i~l~~~~--~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~------~L~~~C~~~l~~~  117 (119)
T 3b84_A           59 GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVP------EAVELCQSFKPKT  117 (119)
T ss_dssp             CCCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHCC---
T ss_pred             CCeEEeCCCC--HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHc
Confidence            4578888887  899999999999999999999999999999999998      5889999998763

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=97.56  E-value=7.9e-05  Score=62.39  Aligned_cols=59  Identities=20%  Similarity=0.334  Sum_probs=52.3

Q ss_pred             CCcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhh
Q 014182           11 SELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLS   77 (429)
Q Consensus        11 ~~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~   77 (429)
                      +...+|.|++++  +++|+...+|+|++++.+++.|+..+..||++++|.      .|....+.||+
T Consensus        62 ~~~~~i~l~~~~--~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~------~L~~~C~~~L~  120 (120)
T 2if5_A           62 DQQNVYEIDFVS--AEALTALMDFAYTATLTVSTANVGDILSAARLLEIP------AVSHVCADLLD  120 (120)
T ss_dssp             -CCSEEECCSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCH------HHHHHHHHHHC
T ss_pred             cCCceEEeCCCC--HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCH------HHHHHHHHHhC
Confidence            345678888865  899999999999999999999999999999999999      48889998874

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=97.55  E-value=8.1e-05  Score=63.28  Aligned_cols=59  Identities=20%  Similarity=0.208  Sum_probs=51.4

Q ss_pred             CcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhh
Q 014182           12 ELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSY   78 (429)
Q Consensus        12 ~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~   78 (429)
                      ....|+|+|++  +++|+...+|+|.++++++..||..|..||++|+|.      .|....+.++.+
T Consensus        59 ~~~~i~l~~v~--~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~------~l~~~C~~~~~~  117 (119)
T 3m5b_A           59 RGQWALGEGIS--PSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQ------SLEEACWRARGD  117 (119)
T ss_dssp             CEEEECCSSCC--HHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCH------HHHHHHHHHC--
T ss_pred             CCCEEEeCCCC--HHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCH------HHHHHHHHHHhh
Confidence            34578888876  899999999999999999999999999999999999      588888888765

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=97.54  E-value=3.6e-05  Score=66.48  Aligned_cols=60  Identities=23%  Similarity=0.205  Sum_probs=51.7

Q ss_pred             cceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhh
Q 014182           13 LNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV   80 (429)
Q Consensus        13 ~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~v   80 (429)
                      ..+|.|+|++  +++|+.+.+|+|.+++++++.||..|..||++|+|.      .|....+.||.+..
T Consensus        60 ~~~i~l~~~~--~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~------~L~~~C~~~l~~~l  119 (135)
T 2yy9_A           60 GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVP------EAVELCQSFQPQTS  119 (135)
T ss_dssp             -CCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHCCC---
T ss_pred             CCeEEeCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHhc
Confidence            3578888887  899999999999999999999999999999999998      58888888887644

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=97.53  E-value=3e-05  Score=66.14  Aligned_cols=60  Identities=22%  Similarity=0.406  Sum_probs=46.4

Q ss_pred             CcceEEcc-CCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhh
Q 014182           12 ELNKIVLD-DLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYV   79 (429)
Q Consensus        12 ~~~~i~L~-d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~   79 (429)
                      ...+|.|+ +++  +++|+.+.+|+|.+++++++.|+..|..||++|+|.+      |....+.||.++
T Consensus        67 ~~~~i~l~~~~~--~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~------l~~~C~~~L~~~  127 (129)
T 3ga1_A           67 RSAVVELPAAVQ--PQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQE------IMEKGTEFFLKV  127 (129)
T ss_dssp             CCSEEECCTTCC--HHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTT------SSCC--------
T ss_pred             CCCEEEECCCCC--HHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHh
Confidence            45678885 666  8999999999999999999999999999999999994      777888888763

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=97.50  E-value=9.5e-05  Score=64.65  Aligned_cols=58  Identities=21%  Similarity=0.251  Sum_probs=51.8

Q ss_pred             CCcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHh
Q 014182           11 SELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFL   76 (429)
Q Consensus        11 ~~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL   76 (429)
                      +...+|.|.|++  +++|+.+.+|+|.+++.+++.||..|..||++|+|.      .|....+.||
T Consensus        86 ~~~~~I~l~~v~--~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~------~L~~~C~~~L  143 (144)
T 2ppi_A           86 GSTYKIELEGIS--VMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLT------DLKTLCCEFL  143 (144)
T ss_dssp             -CCCEEECCSSC--HHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHTTC
T ss_pred             CCCcEEEeCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcH------HHHHHHHHHh
Confidence            355689998886  999999999999999999999999999999999998      4888888876

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=97.50  E-value=0.00019  Score=63.18  Aligned_cols=90  Identities=19%  Similarity=0.206  Sum_probs=70.5

Q ss_pred             CCcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhhcCChHHHHHH
Q 014182           11 SELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIV   90 (429)
Q Consensus        11 ~~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~vl~sW~dsi~v   90 (429)
                      +...+|.|+|++  +++|+.+.+|+|+.++.+++.|+..+..+|++++|.      .|...++.||.+.+-  -.     
T Consensus        71 ~~~~~i~l~~~~--~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~------~l~~~c~~~l~~~l~--~~-----  135 (172)
T 3htm_A           71 SKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALE------RLKVMCEDALCSNLS--VE-----  135 (172)
T ss_dssp             GGTTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCH------HHHHHHHHHHHHTCC--TT-----
T ss_pred             cCCCeEEecCCC--HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHhCC--HH-----
Confidence            445689998875  899999999999999999999999999999999998      599999999997542  22     


Q ss_pred             Hhhhhccchhhhhh---chHHHHHHHHHHH
Q 014182           91 LKSCEKLSPWAENL---QIVRRCSESIAWK  117 (429)
Q Consensus        91 L~sce~llp~AE~l---~Iv~RCidala~k  117 (429)
                        +|-.++.+|+..   .+..+|.+-|+..
T Consensus       136 --n~~~~~~~A~~~~~~~L~~~~~~~i~~~  163 (172)
T 3htm_A          136 --NAAEILILADLHSADQLKTQAVDFINYH  163 (172)
T ss_dssp             --THHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence              333444455543   4667777777653

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=97.45  E-value=0.00023  Score=67.28  Aligned_cols=91  Identities=16%  Similarity=0.215  Sum_probs=70.4

Q ss_pred             CCcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhhcCChHHHHHH
Q 014182           11 SELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIV   90 (429)
Q Consensus        11 ~~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~vl~sW~dsi~v   90 (429)
                      +...+|.|+|++  +++|+.+.+|+|++++++++.||..+..||.+|+|.      .|....+.||.+.+-.        
T Consensus        70 ~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~------~l~~~c~~~L~~~l~~--------  133 (256)
T 3hve_A           70 GSTYKIELEGIS--VMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLT------DLKTLCCEFLEGCIAA--------  133 (256)
T ss_dssp             ---CEEECSSCC--HHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCH------HHHHHHHHHHHHTCCS--------
T ss_pred             CCCCeEEeCCCC--HHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChH------HHHHHHHHHHHhhCCH--------
Confidence            345689999875  899999999999999999999999999999999999      5999999999986532        


Q ss_pred             Hhhhhccchhhhhh---chHHHHHHHHHHHH
Q 014182           91 LKSCEKLSPWAENL---QIVRRCSESIAWKA  118 (429)
Q Consensus        91 L~sce~llp~AE~l---~Iv~RCidala~ka  118 (429)
                       .+|-.++..|+..   .+...|.+-|+...
T Consensus       134 -~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f  163 (256)
T 3hve_A          134 -ENCIGIRDFALHYCLHHVHYLATEYLETHF  163 (256)
T ss_dssp             -STTHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence             2344455556553   46777887776654

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=97.36  E-value=5.7e-05  Score=63.83  Aligned_cols=47  Identities=23%  Similarity=0.330  Sum_probs=42.5

Q ss_pred             cceEEccC-CCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcc
Q 014182           13 LNKIVLDD-LPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTE   61 (429)
Q Consensus        13 ~~~i~L~d-~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE   61 (429)
                      ...|.|+| ++  +++|+.+.+|+|.+++++++.||..+..||++|+|.+
T Consensus        69 ~~~i~l~~~~~--~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~  116 (125)
T 3ohu_A           69 DLVVSLPEEVT--ARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHN  116 (125)
T ss_dssp             SCEEECCTTCC--HHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSS
T ss_pred             CcEEEeCCCCC--HHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHH
Confidence            45777766 54  8999999999999999999999999999999999985

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=97.35  E-value=0.00012  Score=61.69  Aligned_cols=56  Identities=21%  Similarity=0.365  Sum_probs=49.6

Q ss_pred             ceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhh
Q 014182           14 NKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLS   77 (429)
Q Consensus        14 ~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~   77 (429)
                      ..|.|+++  .+++|+.+.+|+|++++++++.|+..|..+|++|+|.      .|....+.||.
T Consensus        62 ~~i~l~~~--~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~------~L~~~C~~~l~  117 (119)
T 2q81_A           62 DVVHLDIS--NAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQ------DIITACHALKS  117 (119)
T ss_dssp             SGGGGGGC--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHHHT
T ss_pred             CEEEeCCC--CHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCH------HHHHHHHHHHh
Confidence            35666655  4899999999999999999999999999999999999      58889999885

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=97.34  E-value=0.00027  Score=60.92  Aligned_cols=59  Identities=20%  Similarity=0.348  Sum_probs=52.7

Q ss_pred             ceEEcc-CCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhh
Q 014182           14 NKIVLD-DLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV   80 (429)
Q Consensus        14 ~~i~L~-d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~v   80 (429)
                      ..|.|. +++  +++|+.+.+|+|++++.+++.||..|..||++|+|.      .|....+.||.+.+
T Consensus        74 ~~i~l~~~v~--~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~------~L~~~C~~~l~~~l  133 (138)
T 2z8h_A           74 LTVTLPEEVT--VKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVH------NIEESCFQFLKFKF  133 (138)
T ss_dssp             EEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCG------GGHHHHHHHTTCCC
T ss_pred             ceEEeCCCCC--HHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHhc
Confidence            467774 664  899999999999999999999999999999999999      59999999998754

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=97.20  E-value=0.0002  Score=61.34  Aligned_cols=76  Identities=18%  Similarity=0.200  Sum_probs=51.1

Q ss_pred             CcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhhcCChHHHHHHH
Q 014182           12 ELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVL   91 (429)
Q Consensus        12 ~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~vl~sW~dsi~vL   91 (429)
                      ...+|.|+|++  +++|+.+.+|+|++++++++.|+..+..+|++++|.      .|...++.||.+.+-         .
T Consensus        63 ~~~~i~l~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~------~l~~~c~~~l~~~l~---------~  125 (145)
T 4eoz_A           63 KKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALE------RLKVMCEDALCSNLS---------V  125 (145)
T ss_dssp             HHTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCH------HHHHHHHCC----------------
T ss_pred             CCceEEecCCC--HHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHH------HHHHHHHHHHHHhCC---------H
Confidence            34688998875  899999999999999999999999999999999998      488999999987541         2


Q ss_pred             hhhhccchhhhhh
Q 014182           92 KSCEKLSPWAENL  104 (429)
Q Consensus        92 ~sce~llp~AE~l  104 (429)
                      .+|-.++.+|+..
T Consensus       126 ~n~~~~l~~A~~~  138 (145)
T 4eoz_A          126 ENAAEILILADLH  138 (145)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHh
Confidence            3455555555543

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=96.98  E-value=0.00096  Score=64.68  Aligned_cols=91  Identities=19%  Similarity=0.222  Sum_probs=73.4

Q ss_pred             CCCcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhhcCChHHHHH
Q 014182           10 DSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSII   89 (429)
Q Consensus        10 ~~~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~vl~sW~dsi~   89 (429)
                      ++...+|.|+|++  +++|+...+|+|+.++.++..|+..|..||++++|.      .|...+|.||.+.+-.       
T Consensus       210 e~~~~~i~l~~~~--~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~------~l~~~c~~~l~~~~~~-------  274 (312)
T 3hqi_A          210 ESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALE------RLKVMCEDALCSNLSV-------  274 (312)
T ss_dssp             --CCSEEEECSSC--HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHTTCCT-------
T ss_pred             ccCCceEEecCCC--HHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHH------HHHHHHHHHHHccCCH-------
Confidence            3456789999975  899999999999999999999999999999999998      6999999999875421       


Q ss_pred             HHhhhhccchhhhhh---chHHHHHHHHHHH
Q 014182           90 VLKSCEKLSPWAENL---QIVRRCSESIAWK  117 (429)
Q Consensus        90 vL~sce~llp~AE~l---~Iv~RCidala~k  117 (429)
                        .+|-.++.+|+..   .+..+|++-|+..
T Consensus       275 --~n~~~~l~~A~~~~~~~L~~~~~~~i~~~  303 (312)
T 3hqi_A          275 --ENAAEILILADLHSADQLKTQAVDFINYH  303 (312)
T ss_dssp             --TTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence              3444555566653   6788898888764

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=96.86  E-value=0.00036  Score=59.07  Aligned_cols=55  Identities=22%  Similarity=0.351  Sum_probs=46.8

Q ss_pred             ceEEc-cCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHh
Q 014182           14 NKIVL-DDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFL   76 (429)
Q Consensus        14 ~~i~L-~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL   76 (429)
                      .+|.| .++  .+++|+.+.+|+|++++++++.||..|..||++++|.+      |....+.||
T Consensus        67 ~~i~l~~~v--~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~------L~~~C~~~l  122 (124)
T 2ihc_A           67 LNITLPEEV--TVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHN------IEESCFQFL  122 (124)
T ss_dssp             EEEECCTTS--CHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSS------CCGGGGGTC
T ss_pred             ceEeecCCc--CHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHH------HHHHHHHHH
Confidence            46777 355  48999999999999999999999999999999999994      556666665

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=96.81  E-value=0.001  Score=55.85  Aligned_cols=47  Identities=13%  Similarity=0.161  Sum_probs=43.2

Q ss_pred             cceEEccCCCCCHHHHHHHHHhhcCccc-ccCchhHHHHHhhHHhhcCcc
Q 014182           13 LNKIVLDDLPGGPEAFELAAKFCYGIAV-DLTASNISGLRCAAEYLEMTE   61 (429)
Q Consensus        13 ~~~i~L~d~PGGaeaFEl~akFCYG~~i-~lt~~NVa~LrCAAeyLeMtE   61 (429)
                      ..+|+|++++  +++|+...+|+|++++ ++++.|+..+..||++|+|..
T Consensus        65 ~~~i~l~~~~--~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~  112 (116)
T 3fkc_A           65 GQVVELSFIR--AEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKF  112 (116)
T ss_dssp             CSEEEECSSC--HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHH
T ss_pred             CCEEEeCCCC--HHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccc
Confidence            4688998886  8999999999999999 799999999999999999973

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=93.10  E-value=0.1  Score=42.58  Aligned_cols=45  Identities=16%  Similarity=0.313  Sum_probs=37.6

Q ss_pred             CcceEEccCCCCCHHHHHHHHHhhc-----C---cccc---cCchhHHHHHhhHHhhc
Q 014182           12 ELNKIVLDDLPGGPEAFELAAKFCY-----G---IAVD---LTASNISGLRCAAEYLE   58 (429)
Q Consensus        12 ~~~~i~L~d~PGGaeaFEl~akFCY-----G---~~i~---lt~~NVa~LrCAAeyLe   58 (429)
                      ....|.|++++  +.+++.+..|||     .   ..+.   |++.|+--|-.||.||+
T Consensus        41 ~~~~I~l~~V~--~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~   96 (97)
T 4ajy_C           41 ETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD   96 (97)
T ss_dssp             --CEEECTTSC--HHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHT
T ss_pred             CCCceECCCCC--HHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhC
Confidence            34578888875  789999999999     4   5666   99999999999999997

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=87.59  E-value=0.25  Score=43.98  Aligned_cols=58  Identities=17%  Similarity=0.304  Sum_probs=36.2

Q ss_pred             eEEccCCCCCHHHHHHHHHhhcCcc---------------------------cccCchhHHHHHhhHHhhcCcccccCCC
Q 014182           15 KIVLDDLPGGPEAFELAAKFCYGIA---------------------------VDLTASNISGLRCAAEYLEMTEDLEEGN   67 (429)
Q Consensus        15 ~i~L~d~PGGaeaFEl~akFCYG~~---------------------------i~lt~~NVa~LrCAAeyLeMtE~~~~gN   67 (429)
                      .|.|++++|  .+++.+..|||--+                           +.++..++--|--||.||+|.      .
T Consensus        41 ~Ipl~~V~~--~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~------~  112 (160)
T 2p1m_A           41 GVPLPNVTS--KILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIK------N  112 (160)
T ss_dssp             --CCTTSCH--HHHHHHHHC------------------------------------------CHHHHHHTTCH------H
T ss_pred             ceeCCcCcH--HHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHH------H
Confidence            677777775  89999999999533                           478899999999999999999      6


Q ss_pred             hHHHHHHHhhhhh
Q 014182           68 LIFKTEAFLSYVV   80 (429)
Q Consensus        68 Li~ktE~fL~~~v   80 (429)
                      |+.-+-.|+...+
T Consensus       113 Lldl~c~~vA~~i  125 (160)
T 2p1m_A          113 LLDLTCQTVADMI  125 (160)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH
Confidence            8889988888766

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=84.13  E-value=0.84  Score=39.61  Aligned_cols=59  Identities=15%  Similarity=0.289  Sum_probs=49.2

Q ss_pred             ceEEccCCCCCHHHHHHHHHhhcCcc--------------------------cccCchhHHHHHhhHHhhcCcccccCCC
Q 014182           14 NKIVLDDLPGGPEAFELAAKFCYGIA--------------------------VDLTASNISGLRCAAEYLEMTEDLEEGN   67 (429)
Q Consensus        14 ~~i~L~d~PGGaeaFEl~akFCYG~~--------------------------i~lt~~NVa~LrCAAeyLeMtE~~~~gN   67 (429)
                      ..|.|++++  +.+++.+..|||--+                          +.++..++--|-.||.||+|.      .
T Consensus        37 ~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~------~  108 (141)
T 1fs1_B           37 DPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK------G  108 (141)
T ss_dssp             SSEECTTCC--HHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHHHHHHTCH------H
T ss_pred             CceecCCcC--HHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhh------H
Confidence            368888876  579999999998322                          678999999999999999998      6


Q ss_pred             hHHHHHHHhhhhh
Q 014182           68 LIFKTEAFLSYVV   80 (429)
Q Consensus        68 Li~ktE~fL~~~v   80 (429)
                      |+.-+-.|+...+
T Consensus       109 Lldl~c~~vA~~i  121 (141)
T 1fs1_B          109 LLDVTCKTVANMI  121 (141)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888887655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	429
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	97.85
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	97.81

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=9e-06  Score=67.63  Aligned_cols=60  Identities=25%  Similarity=0.357  Sum_probs=54.3

Q ss_pred             CcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhh
Q 014182           12 ELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYV   79 (429)
Q Consensus        12 ~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~   79 (429)
                      +..++.+++++  +++|+.+.+|+|.+++++++.||..+..||++|+|.+      |....+.||.++
T Consensus        61 ~~~~i~~~~v~--~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~------L~~~C~~~L~~i  120 (121)
T d1buoa_          61 NSQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCLKMLETI  120 (121)
T ss_dssp             CCSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHHHHHHHH
T ss_pred             ccceeecCCCC--HHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHH------HHHHHHHHHHhC
Confidence            45688998885  8999999999999999999999999999999999994      899999999763

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=9e-06  Score=67.22  Aligned_cols=54  Identities=24%  Similarity=0.477  Sum_probs=48.2

Q ss_pred             EccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhh
Q 014182           17 VLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSY   78 (429)
Q Consensus        17 ~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~   78 (429)
                      .+.++  .+++|+.+.+|+|+++++++..||..+.+||++|+|.      .|+..++.||..
T Consensus        68 ~~~~v--~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~------~L~~~C~~~L~~  121 (122)
T d1r29a_          68 LDPEI--NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQME------HVVDTCRKFIKA  121 (122)
T ss_dssp             CCTTS--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCH------HHHHHHHHHHHT
T ss_pred             eeccc--CHHHHHHHHhhhcCCeecCchhhHHHHHHHHHHHCcH------HHHHHHHHHHHh
Confidence            33444  4799999999999999999999999999999999998      699999999875