Citrus Sinensis ID: 014235

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MAGAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
cccEEEEEEEEcccccEEEEEccccccccHHHHHHHHHHHHHcccccccccEEEEccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccEEEcccccccccEEEEcEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEcccccEEEEEEccHHHHHHcccccccccEEcccccccccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEcccEEEEEEEEEEEccccccEEEEEEEEccccccccccEEEEcccEEEEEccccEEEEEEcccccccEEEEEEEEEccccccccccccccccEEEEEEcccEEEccEEEEEEEEEEcccccccccEEEEEEEccEEEEEc
cccEEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccEEEEccEEEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHcccEcccccccEEcccEEEEEHHHHEEEEEcccccEEEEEEEEEEEEEEEEccccccEEccccEEEEEcccccccccEEEEEccEEEEEEEEcccccccEEEEEcccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEEEEccccccccEEEEcEEEEEEcccccEEEEEEEEcccccEEEEEEEEcccccccccccccccccEEEEEEEEEEEcccEEEEEEEEEcccccccccEEEEEEccccEEEEEc
MAGAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIekdgdaqsqdpvvydngvSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMmdfgypqyteanILSEFIKtdayrmevtqrppmavTNAVSWRsegiqykknevFLDVVEHVNILVNSNGQIIRSDVVGALKMRTylsgmpecklglndrILLEAqgrstkgkaidlddikfhQCVRLArfendrtisfippdgsfdlmTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQfkerstatnveielpvssdasnpdvrtsmgsasyvpedEALIWKIrsfpggkeymlraeftlpsitaeeatperkapirvkfeipyftvsGIQVRYLKIIEKsgyhalpwVRYITMAGEYELRLI
MAGAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLiekdgdaqsqdPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFeeleeeslrdNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILvnsngqiirsdVVGALKMRTYLSGMPECKLGLNDRILLEAQGRstkgkaidlddiKFHQCVRLarfendrtisfippdgsFDLMTYRLNTQVKPLIWVEAqverhsrsrvEILVKarsqfkerstatnveielpvssdasnpdvRTSMGsasyvpedeaLIWKIRSFPGGKEYMLRAEFTlpsitaeeatperkapirvkfeipyftvsgIQVRYLKIIEKsgyhalpwvrYITMAGEYELRLI
MAGAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
****VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDG****QDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILV******************************************DEALIWKIRSFPGGKEYMLRAEFTLPSITA*******KAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYEL***
*AGAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAY******RP*MAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLND*****************LDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEF****************PIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
MAGAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
*AGAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAY***VTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
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MAGAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query428 2.2.26 [Sep-21-2011]
P35602422 AP-1 complex subunit mu-1 yes no 0.981 0.995 0.594 1e-159
Q32Q06423 AP-1 complex subunit mu-1 yes no 0.978 0.990 0.596 1e-158
Q9BXS5423 AP-1 complex subunit mu-1 yes no 0.978 0.990 0.594 1e-158
Q2KJ81423 AP-1 complex subunit mu-1 yes no 0.978 0.990 0.594 1e-158
P35585423 AP-1 complex subunit mu-1 yes no 0.978 0.990 0.594 1e-158
Q54HS9428 AP-1 complex subunit mu O yes no 0.978 0.978 0.578 1e-154
Q9Y6Q5423 AP-1 complex subunit mu-2 no no 0.978 0.990 0.589 1e-153
Q3SYW1423 AP-1 complex subunit mu-2 no no 0.978 0.990 0.587 1e-153
Q9WVP1423 AP-1 complex subunit mu-2 no no 0.978 0.990 0.587 1e-152
Q9HFE5426 AP-1 complex subunit mu-1 yes no 0.983 0.988 0.531 1e-142
>sp|P35602|AP1M_CAEEL AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2 Back     alignment and function desciption
 Score =  561 bits (1445), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 252/424 (59%), Positives = 337/424 (79%), Gaps = 4/424 (0%)

Query: 4   AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFI 63
           A SA+F+LD+KG+ ++ R+YRGD+     ++F   L+EK+ +  S  PV+     +++FI
Sbjct: 2   ATSAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKEEEG-SAAPVLTYQDTNFVFI 60

Query: 64  QHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDF 123
           +H+N+YL++A R N N   +L FL++ V+VF  YF+++EEES+RDNFVV+YELLDEMMDF
Sbjct: 61  KHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDF 120

Query: 124 GYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNI 183
           G+PQ TE+ IL E+I  +  ++    RPPMAVTNAVSWRSEGI+Y+KNEVFLDV+E VN+
Sbjct: 121 GFPQTTESRILQEYITQEGQKLISAPRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNM 180

Query: 184 LVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQ 243
           L ++NG +++S++VG++KMR YL+GMPE +LGLND++L E  GR  K K+++L+D+KFHQ
Sbjct: 181 LASANGTVLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRG-KSKSVELEDVKFHQ 239

Query: 244 CVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQ 303
           CVRL+RF+ DRTISFIPPDG+F+LM+YRL T VKPLIW+E  +ERHS SRV  ++KA+SQ
Sbjct: 240 CVRLSRFDTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSRVSFIIKAKSQ 299

Query: 304 FKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEF 363
           FK RSTA NVEI +PV SDA +P  +TS+GS  Y PE  A +W I++FPGGKEY+L A  
Sbjct: 300 FKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPGGKEYLLTAHL 359

Query: 364 TLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEY 423
           +LPS+ +EE+  E + PI+VKFEIPYFT SGIQVRYLKIIEKSGY ALPWVRYIT  GEY
Sbjct: 360 SLPSVMSEES--EGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEY 417

Query: 424 ELRL 427
           E+R+
Sbjct: 418 EMRM 421
Required for many aspects of development and behavior, including negative regulation of vulval differentiation.
Caenorhabditis elegans (taxid: 6239)
>sp|Q32Q06|AP1M1_RAT AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|Q9BXS5|AP1M1_HUMAN AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|Q2KJ81|AP1M1_BOVIN AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|P35585|AP1M1_MOUSE AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|Q54HS9|AP1M_DICDI AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y6Q5|AP1M2_HUMAN AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4 Back     alignment and function description
>sp|Q3SYW1|AP1M2_BOVIN AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3 Back     alignment and function description
>sp|Q9WVP1|AP1M2_MOUSE AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3 Back     alignment and function description
>sp|Q9HFE5|AP1M1_SCHPO AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apm1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
224107797428 predicted protein [Populus trichocarpa] 1.0 1.0 0.927 0.0
15219810428 AP-1 complex subunit mu [Arabidopsis tha 1.0 1.0 0.913 0.0
297837421428 clathrin adaptor complexes medium subuni 1.0 1.0 0.911 0.0
297843902428 clathrin adaptor complexes medium subuni 1.0 1.0 0.911 0.0
225470599428 PREDICTED: AP-1 complex subunit mu-1 [Vi 1.0 1.0 0.918 0.0
255540561428 clathrin coat assembly protein ap-1, put 1.0 1.0 0.908 0.0
356567664428 PREDICTED: AP-1 complex subunit mu-1-I-l 1.0 1.0 0.913 0.0
356526771428 PREDICTED: AP-1 complex subunit mu-1-I-l 1.0 1.0 0.913 0.0
449434961428 PREDICTED: AP-1 complex subunit mu-1-lik 1.0 1.0 0.915 0.0
224100165428 predicted protein [Populus trichocarpa] 1.0 1.0 0.918 0.0
>gi|224107797|ref|XP_002314604.1| predicted protein [Populus trichocarpa] gi|222863644|gb|EEF00775.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  837 bits (2161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/428 (92%), Positives = 416/428 (97%)

Query: 1   MAGAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSY 60
           MAGA SALFLLDIKGRVLVWRDYRGDVSA QAERFFTKLIEK+GD QSQDPVVYDNGVSY
Sbjct: 1   MAGAASALFLLDIKGRVLVWRDYRGDVSAVQAERFFTKLIEKEGDPQSQDPVVYDNGVSY 60

Query: 61  LFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM 120
           ++IQHSNVYLMTASRQNCNAASLL FLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM
Sbjct: 61  MYIQHSNVYLMTASRQNCNAASLLSFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM 120

Query: 121 MDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEH 180
           MDFGYPQYTEA ILSEFIKT+AYRME +QRPPMAVTNAVSWRSEGI YKKNEVFLDVVE 
Sbjct: 121 MDFGYPQYTEAKILSEFIKTNAYRMETSQRPPMAVTNAVSWRSEGINYKKNEVFLDVVES 180

Query: 181 VNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIK 240
           VNILVNSNGQ+IRSDVVGALKMRTYLSGMPECKLGLNDR+LLEAQGR+TKGKAIDL+DIK
Sbjct: 181 VNILVNSNGQVIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIK 240

Query: 241 FHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKA 300
           FHQCVRLARFENDRTISFIPPDG+FDLMTYRL+TQVKPLIWVEAQVERHSRSRVEI+VKA
Sbjct: 241 FHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEAQVERHSRSRVEIMVKA 300

Query: 301 RSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLR 360
           RSQFKERSTATNVEIELPVS D SNP++RTSMGSASY PE++AL+WKI+SFPGGKEYMLR
Sbjct: 301 RSQFKERSTATNVEIELPVSVDVSNPNIRTSMGSASYAPENDALLWKIKSFPGGKEYMLR 360

Query: 361 AEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMA 420
           AEF+LPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGY ALPWVRYITMA
Sbjct: 361 AEFSLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 420

Query: 421 GEYELRLI 428
           GEYELRLI
Sbjct: 421 GEYELRLI 428

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15219810|ref|NP_176277.1| AP-1 complex subunit mu [Arabidopsis thaliana] gi|2462748|gb|AAB71967.1| putative Clathrin Coat Assembly protein [Arabidopsis thaliana] gi|20466372|gb|AAM20503.1| clathrin adaptor medium chain protein MU1B, putative [Arabidopsis thaliana] gi|25084014|gb|AAN72155.1| clathrin adaptor medium chain protein MU1B, putative [Arabidopsis thaliana] gi|332195610|gb|AEE33731.1| AP-1 complex subunit mu [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297837421|ref|XP_002886592.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297332433|gb|EFH62851.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297843902|ref|XP_002889832.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297335674|gb|EFH66091.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225470599|ref|XP_002274463.1| PREDICTED: AP-1 complex subunit mu-1 [Vitis vinifera] gi|296083422|emb|CBI23375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255540561|ref|XP_002511345.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] gi|223550460|gb|EEF51947.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356567664|ref|XP_003552037.1| PREDICTED: AP-1 complex subunit mu-1-I-like [Glycine max] Back     alignment and taxonomy information
>gi|356526771|ref|XP_003531990.1| PREDICTED: AP-1 complex subunit mu-1-I-like [Glycine max] Back     alignment and taxonomy information
>gi|449434961|ref|XP_004135264.1| PREDICTED: AP-1 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224100165|ref|XP_002311769.1| predicted protein [Populus trichocarpa] gi|222851589|gb|EEE89136.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
TAIR|locus:2036606428 HAP13 "HAPLESS 13" [Arabidopsi 1.0 1.0 0.913 2.1e-212
TAIR|locus:2019913428 AT1G10730 [Arabidopsis thalian 1.0 1.0 0.869 3.5e-201
UNIPROTKB|Q2KJ81423 AP1M1 "AP-1 complex subunit mu 0.976 0.988 0.6 5.9e-144
UNIPROTKB|J9P1I0423 AP1M1 "Uncharacterized protein 0.976 0.988 0.6 5.9e-144
UNIPROTKB|Q9BXS5423 AP1M1 "AP-1 complex subunit mu 0.976 0.988 0.6 5.9e-144
UNIPROTKB|F2Z5I7423 AP1M1 "Uncharacterized protein 0.976 0.988 0.6 5.9e-144
RGD|1307653423 Ap1m1 "adaptor-related protein 0.976 0.988 0.602 5.9e-144
MGI|MGI:102776423 Ap1m1 "adaptor-related protein 0.976 0.988 0.6 7.5e-144
WB|WBGene00006829422 unc-101 [Caenorhabditis elegan 0.981 0.995 0.594 8.6e-143
UNIPROTKB|P35602422 unc-101 "AP-1 complex subunit 0.981 0.995 0.594 8.6e-143
TAIR|locus:2036606 HAP13 "HAPLESS 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2053 (727.8 bits), Expect = 2.1e-212, P = 2.1e-212
 Identities = 391/428 (91%), Positives = 414/428 (96%)

Query:     1 MAGAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSY 60
             MAGA SALFLLDIKGRVLVWRDYRGDVSA QAERFFTKLIEK+GD+QS DPV YDNGV+Y
Sbjct:     1 MAGAASALFLLDIKGRVLVWRDYRGDVSAAQAERFFTKLIEKEGDSQSNDPVAYDNGVTY 60

Query:    61 LFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM 120
             +F+QHSNVYLM ASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM
Sbjct:    61 MFVQHSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM 120

Query:   121 MDFGYPQYTEANILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEH 180
             MDFGYPQYTEA ILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDV+E+
Sbjct:   121 MDFGYPQYTEARILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVIEN 180

Query:   181 VNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIK 240
             VNILVNSNGQI+RSDVVGALKMRTYL+GMPECKLGLNDR+LLEAQGR+TKGKAIDL+DIK
Sbjct:   181 VNILVNSNGQIVRSDVVGALKMRTYLTGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIK 240

Query:   241 FHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKA 300
             FHQCVRLARFENDRTISFIPPDG+FDLMTYRL+TQVKPLIWVEAQ+E HSRSRVE+L+KA
Sbjct:   241 FHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEAQIESHSRSRVEMLIKA 300

Query:   301 RSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLR 360
             RSQFKERSTATNVEIELPV +DASNP VRTS+GSASY PE +AL+WKI+SFPG KEYMLR
Sbjct:   301 RSQFKERSTATNVEIELPVPTDASNPTVRTSLGSASYAPEKDALVWKIKSFPGNKEYMLR 360

Query:   361 AEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMA 420
             AEF LPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGY ALPWVRYITMA
Sbjct:   361 AEFHLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 420

Query:   421 GEYELRLI 428
             GEYELRL+
Sbjct:   421 GEYELRLV 428
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030125 "clathrin vesicle coat" evidence=ISS
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2019913 AT1G10730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJ81 AP1M1 "AP-1 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P1I0 AP1M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BXS5 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5I7 AP1M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307653 Ap1m1 "adaptor-related protein complex 1, mu 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:102776 Ap1m1 "adaptor-related protein complex AP-1, mu subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00006829 unc-101 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P35602 unc-101 "AP-1 complex subunit mu-1-I" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35585AP1M1_MOUSENo assigned EC number0.59430.97890.9905yesno
Q54HS9AP1M_DICDINo assigned EC number0.57800.97890.9789yesno
P35602AP1M_CAEELNo assigned EC number0.59430.98130.9952yesno
Q32Q06AP1M1_RATNo assigned EC number0.59660.97890.9905yesno
Q9BXS5AP1M1_HUMANNo assigned EC number0.59430.97890.9905yesno
Q00776AP1M1_YEASTNo assigned EC number0.45330.98590.8884yesno
Q2KJ81AP1M1_BOVINNo assigned EC number0.59430.97890.9905yesno
Q9HFE5AP1M1_SCHPONo assigned EC number0.53190.98360.9882yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_X5229
hypothetical protein (428 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 0.0
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 1e-160
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 1e-146
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 1e-118
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 3e-93
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 7e-84
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 3e-76
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 1e-57
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 3e-34
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 6e-33
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 4e-28
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 2e-17
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 3e-16
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 5e-09
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information 
 Score =  513 bits (1324), Expect = 0.0
 Identities = 197/268 (73%), Positives = 235/268 (87%), Gaps = 1/268 (0%)

Query: 156 TNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLG 215
           TNAVSWR EGI+YKKNEVFLDV+E VN+LV+ NGQ++RS++VG +KMR+YLSGMPE KLG
Sbjct: 1   TNAVSWRPEGIKYKKNEVFLDVIESVNLLVDLNGQVLRSEIVGTIKMRSYLSGMPELKLG 60

Query: 216 LNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQ 275
           LND++L EA GRS+KGKA++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+YRL+TQ
Sbjct: 61  LNDKVLFEATGRSSKGKAVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLSTQ 120

Query: 276 VKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSA 335
           VKPLIWVE  VERHSRSRVEI+VKA++QFK RSTA NVEI +PV  DA +P  + S GS 
Sbjct: 121 VKPLIWVEPTVERHSRSRVEIMVKAKTQFKRRSTANNVEIRIPVPPDADSPRFKCSAGSV 180

Query: 336 SYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATP-ERKAPIRVKFEIPYFTVSG 394
            Y PE +AL+WKI+SFPGGKE+ +RAEF LPSI +EE    E+KAPI+VKFEIPYFTVSG
Sbjct: 181 VYAPEKDALLWKIKSFPGGKEFSMRAEFGLPSIESEEEQGTEKKAPIQVKFEIPYFTVSG 240

Query: 395 IQVRYLKIIEKSGYHALPWVRYITMAGE 422
           +QVRYLKIIEKSGY ALPWVRYIT +G+
Sbjct: 241 LQVRYLKIIEKSGYQALPWVRYITQSGD 268

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 1 (AP-1) medium mu1 subunit, which includes two closely related homologs, mu1A (encoded by ap1m1) and mu1B (encoded by ap1m2). Mu1A is ubiquitously expressed, but mu1B is expressed exclusively in polarized epithelial cells. AP-1 has been implicated in bi-directional transport between the trans-Golgi network (TGN) and endosomes. It plays an essential role in the formation of clathrin-coated vesicles (CCVs) from the trans-Golgi network (TGN). Epithelial cell-specific AP-1 is also involved in sorting to the basolateral surface of polarized epithelial cells. Recruitment of AP-1 to the TGN membrane is regulated by a small GTPase, ADP-ribosylation factor 1 (ARF1). Phosphorylation/dephosphorylation events can also regulate the function of AP-1. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-1. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-1 mu1 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 268
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 428
KOG0938446 consensus Adaptor complexes medium subunit family 100.0
KOG0937424 consensus Adaptor complexes medium subunit family 100.0
KOG2740418 consensus Clathrin-associated protein medium chain 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2635512 consensus Medium subunit of clathrin adaptor compl 100.0
KOG2677922 consensus Stoned B synaptic vesicle biogenesis pro 100.0
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.95
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 99.83
KOG0936182 consensus Clathrin adaptor complex, small subunit 99.76
KOG0934145 consensus Clathrin adaptor complex, small subunit 99.73
KOG0935143 consensus Clathrin adaptor complex, small subunit 99.72
KOG3343175 consensus Vesicle coat complex COPI, zeta subunit 99.69
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 99.27
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.03
PF15001189 AP-5_subunit_s1: AP-5 complex subunit sigma-1 96.42
PF03164415 Mon1: Trafficking protein Mon1; InterPro: IPR00435 96.3
KOG0997523 consensus Uncharacterized conserved protein Sand [ 94.38
PF08923119 MAPKK1_Int: Mitogen-activated protein kinase kinas 93.48
COG5122134 TRS23 Transport protein particle (TRAPP) complex s 92.65
PF04099142 Sybindin: Sybindin-like family ; InterPro: IPR0072 91.93
PF1377483 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3 89.39
PF09201148 SRX: SRX; InterPro: IPR015284 The signal recogniti 86.51
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 83.74
KOG3369199 consensus Transport protein particle (TRAPP) compl 80.06
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.3e-105  Score=740.30  Aligned_cols=417  Identities=41%  Similarity=0.741  Sum_probs=388.4

Q ss_pred             ceEEEEEEeCCCCEEEEEccCCCCChhHHHHHHHHHhhccCCCCCCCCeEEeCCEEEEEEEeCCEEEEEEecCCcCHHHH
Q 014235            4 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASL   83 (428)
Q Consensus         4 Mi~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~t~~~~n~~~~   83 (428)
                      ||+++||+|.+|++|+.|.||++..++..+.|+-++++..   ...+|+..++++.|+|.+.++||+|++|++|.|.+.+
T Consensus         1 misglfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n~---d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v   77 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINNL---DVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAV   77 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhcc---ccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhH
Confidence            8999999999999999999999999999999999999763   3689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHhcCCeeeecChHHHhhhccCcccccccc----c-----CCC--
Q 014235           84 LFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVT----Q-----RPP--  152 (428)
Q Consensus        84 ~~~L~~i~~~l~~~~~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~~~~l~~~i~~~~~~~~~~----~-----~~~--  152 (428)
                      ++||..+..++..|||.++|+.|++||.+|||+||||+|+|+||+|++++|+.++..+++..+-.    +     +++  
T Consensus        78 ~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~  157 (446)
T KOG0938|consen   78 FEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQATEL  157 (446)
T ss_pred             HHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999887765521    1     111  


Q ss_pred             --CccccccccccCCCccccceEEEEEEEeeeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCC-C-
Q 014235          153 --MAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGR-S-  228 (428)
Q Consensus       153 --~~~~~~v~wR~~~~~~~~nei~vdV~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~-~-  228 (428)
                        +..++.++||+.|++|++||+|+||+|++|.+++++|++++++|.|.|.|++||||||+|++||||.+.++++++ + 
T Consensus       158 ~ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esk  237 (446)
T KOG0938|consen  158 RSSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESK  237 (446)
T ss_pred             cccccccccccccccceeccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceeecccccc
Confidence              344678999999999999999999999999999999999999999999999999999999999999988773321 1 


Q ss_pred             -----------CCCceEEeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCC-CCcEEEEEEEEEccceEEEE
Q 014235          229 -----------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQV-KPLIWVEAQVERHSRSRVEI  296 (428)
Q Consensus       229 -----------~~~~~i~l~d~~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~~~-~P~~~v~~~~~~~~~~~~ei  296 (428)
                                 +....+.|+||.||+||++++|++++.|+|+||||+|+||+||+..++ +||.+ .|.+++.+.+++|+
T Consensus       238 s~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~enInlPFrV-~PiV~el~r~kie~  316 (446)
T KOG0938|consen  238 SDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTENINLPFRV-TPIVTELGRTKIEY  316 (446)
T ss_pred             ccccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccCcccceEe-eeheecccceeEEE
Confidence                       244569999999999999999999999999999999999999999987 89875 79999988899999


Q ss_pred             EEEeeecCCCcceeeeEEEEecCCCCCCCceEEeccceEEEeCCCcEEEEEeceeCCCCeeEEEEEEEecCCC-CCCCCC
Q 014235          297 LVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSIT-AEEATP  375 (428)
Q Consensus       297 ~l~~~~~~~~~~~~~~v~v~iplP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~k~~g~~~~~l~~~i~~~~~~-~~~~~~  375 (428)
                      ++.+++.|+++..+.+|.++||+|+++..+.++++.|+++|.+++++++|+|+|++|.+|.+|+|++++.+.. +...| 
T Consensus       317 ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gkaky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~W-  395 (446)
T KOG0938|consen  317 RITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGKAKYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQW-  395 (446)
T ss_pred             EEEEeccCCchhhhcceEEEecCCCccccceeEEecCccccCcccceEEEEecccCCcccceeEEEEEeccCccccccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997765 56678 


Q ss_pred             CCCCCEEEEEEECcccccccEEEEEEEEE-cCCCCCccceEEEEEeCcEEEE
Q 014235          376 ERKAPIRVKFEIPYFTVSGIQVRYLKIIE-KSGYHALPWVRYITMAGEYELR  426 (428)
Q Consensus       376 ~~~~pi~v~F~ip~~t~SGl~V~~l~v~~-~~~~~~~k~vrY~t~sg~Y~~r  426 (428)
                       ..+||+++|++|||+.|||.|+|++|.+ +++|+..|||||+|+||+||+|
T Consensus       396 -trPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vkWVrYitkaGsyEiR  446 (446)
T KOG0938|consen  396 -TRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVKWVRYITKAGSYEIR  446 (446)
T ss_pred             -cCCCceeEEeeeeecCCceEEEEEEEecccCCCceEEEEEEecccceeeeC
Confidence             8999999999999999999999999999 5889999999999999999998

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1 Back     alignment and domain information
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain Back     alignment and domain information
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown] Back     alignment and domain information
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses Back     alignment and domain information
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D Back     alignment and domain information
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 1e-159
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-111
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-107
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-88
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 2e-87
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 9e-60
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 1e-59
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-58
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-58
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-56
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 2e-53
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 5e-30
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 8e-30
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure 
Iteration: 1

 Score =  559 bits (1440), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 252/424 (59%), Positives = 341/424 (80%), Gaps = 5/424 (1%)
Query: 4   AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFI 63
           + SA+++LD+KG+VL+ R+YRGDV   + E F   L+EK+ +     P++   GV +++I
Sbjct: 2   SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGM-LSPILAHGGVRFMWI 60
Query: 64  QHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDF 123
           +H+N+YL+  S++N   + +  FL++VV VF  YF+ELEEES+RDNFV++YELLDE+MDF
Sbjct: 61  KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 124 GYPQYTEANILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVN 182
           GYPQ T++ IL EFI  + +++E    RPP  VTNAVSWRSEGI+Y+KNEVFLDV+E VN
Sbjct: 121 GYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVN 180
Query: 183 ILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFH 242
           +LV++NG ++RS++VG++KMR +LSGMPE +LGLND++L +  GR  K K+++L+D+KFH
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDVKFH 239
Query: 243 QCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARS 302
           QCVRL+RFENDRTISFIPPDG F+LM+YRLNT VKPLIW+E+ +E+HS SR+E +VKA+S
Sbjct: 240 QCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKS 299
Query: 303 QFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAE 362
           QFK RSTA NVEI +PV +DA +P  +T++GS  +VPE+  ++W ++SFPGGKEY++RA 
Sbjct: 300 QFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAH 359
Query: 363 FTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGE 422
           F LPS+ AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGY A+PWVRYIT  G+
Sbjct: 360 FGLPSVEAEDK--EGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGD 417
Query: 423 YELR 426
           Y+LR
Sbjct: 418 YQLR 421
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 1e-133
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 1e-132
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 1e-101
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 6e-97
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 1e-96
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 2e-96
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 6e-28
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 1e-25
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 1e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
 Score =  390 bits (1001), Expect = e-133
 Identities = 251/424 (59%), Positives = 340/424 (80%), Gaps = 5/424 (1%)

Query: 4   AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFI 63
           + SA+++LD+KG+VL+ R+YRGDV   + E F   L+EK+ +     P++   GV +++I
Sbjct: 2   SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKE-EEGMLSPILAHGGVRFMWI 60

Query: 64  QHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDF 123
           +H+N+YL+  S++N   + +  FL++VV VF  YF+ELEEES+RDNFV++YELLDE+MDF
Sbjct: 61  KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120

Query: 124 GYPQYTEANILSEFIKTDAYRMEVTQR-PPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVN 182
           GYPQ T++ IL EFI  + +++E     PP  VTNAVSWRSEGI+Y+KNEVFLDV+E VN
Sbjct: 121 GYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVN 180

Query: 183 ILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFH 242
           +LV++NG ++RS++VG++KMR +LSGMPE +LGLND++L +  GR  K K+++L+D+KFH
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDVKFH 239

Query: 243 QCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARS 302
           QCVRL+RFENDRTISFIPPDG F+LM+YRLNT VKPLIW+E+ +E+HS SR+E +VKA+S
Sbjct: 240 QCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKS 299

Query: 303 QFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAE 362
           QFK RSTA NVEI +PV +DA +P  +T++GS  +VPE+  ++W ++SFPGGKEY++RA 
Sbjct: 300 QFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAH 359

Query: 363 FTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGE 422
           F LPS+ AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGY A+PWVRYIT  G+
Sbjct: 360 FGLPSVEAED--KEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGD 417

Query: 423 YELR 426
           Y+LR
Sbjct: 418 YQLR 421
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.98
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.97
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.96
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 98.87
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 93.33
3cpt_A143 Mitogen-activated protein kinase kinase 1- interac 92.84
3cue_A219 Transport protein particle 23 kDa subunit; membran 92.59
2j3t_C145 Trafficking protein particle complex subunit 1, tr 91.1
2vx8_A169 Nucleoporin-like protein RIP, vesicle-associated m 91.03
3bw6_A144 Synaptobrevin homolog YKT6; YKT6P, farnesylation, 90.42
1nrj_A158 Signal recognition particle receptor alpha subunit 90.28
4b93_A189 Vesicle-associated membrane protein 7; endocytosis 90.25
4afi_A173 AP-3 complex subunit delta-1, vesicle-associated p 89.36
2j3w_A142 Sedlin, trafficking protein particle complex prote 87.74
2fh5_A185 Signal recognition particle receptor alpha subunit 85.9
3cue_C159 Transport protein particle 18 kDa subunit; membran 85.67
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
Probab=100.00  E-value=3.5e-98  Score=764.84  Aligned_cols=419  Identities=39%  Similarity=0.748  Sum_probs=368.0

Q ss_pred             ceEEEEEEeCCCCEEEEEccCCCCChhHHHHHHHHHhhccCCCCCCCCeEEeCCEEEEEEEeCCEEEEEEecCCcCHHHH
Q 014235            4 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASL   83 (428)
Q Consensus         4 Mi~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~t~~~~n~~~~   83 (428)
                      ||+++||+|++|+++++|+|+++.+++.++.|.+.+....+  ...+|+++.++++|+|+++++|||+++++.|+|++++
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~--~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~   78 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQ--QVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMV   78 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSS--CCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhcccc--CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            89999999999999999999998888889999999886532  2579999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHhcCCeeeecChHHHhhhccCccccccc-----ccCCCCccccc
Q 014235           84 LFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEV-----TQRPPMAVTNA  158 (428)
Q Consensus        84 ~~~L~~i~~~l~~~~~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~~~~l~~~i~~~~~~~~~-----~~~~~~~~~~~  158 (428)
                      ++|||+++++|++||++++|++|++||++||++||||+|+|+|++|+++.|++++.++++..+.     +.++|++++++
T Consensus        79 le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  158 (435)
T 2vgl_M           79 FEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQ  158 (435)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999987653     12445567788


Q ss_pred             cccccCCCccccceEEEEEEEeeeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCCC-----C--CC
Q 014235          159 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRS-----T--KG  231 (428)
Q Consensus       159 v~wR~~~~~~~~nei~vdV~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~-----~--~~  231 (428)
                      +|||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..++.++++     +  ..
T Consensus       159 i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~  238 (435)
T 2vgl_M          159 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK  238 (435)
T ss_dssp             CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC----------------
T ss_pred             cccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999998665433211     0  12


Q ss_pred             ceEEeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeecCCCcceee
Q 014235          232 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTAT  311 (428)
Q Consensus       232 ~~i~l~d~~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~ei~l~~~~~~~~~~~~~  311 (428)
                      .++.|+||+|||||++++|+++|.|+|+||||+|+||+||++.+..||+.+.|+++..+++++|++++++++++++..++
T Consensus       239 ~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~  318 (435)
T 2vgl_M          239 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ  318 (435)
T ss_dssp             -CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSEEE
T ss_pred             CceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCceee
Confidence            46789999999999999999999999999999999999999887755555689998766679999999999999888899


Q ss_pred             eEEEEecCCCCCCCceEEeccceEEEeCCCcEEEEEeceeCCCCeeEEEEEEEecCCCCCCCCCCCCCCEEEEEEECccc
Q 014235          312 NVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFT  391 (428)
Q Consensus       312 ~v~v~iplP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~k~~g~~~~~l~~~i~~~~~~~~~~~~~~~~pi~v~F~ip~~t  391 (428)
                      +|.|+||+|+++.++++++++|+++|++++++++|+|++++|+++++++|++++++......+  .++||+|+|++| ++
T Consensus       319 ~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~--~~~pi~v~F~i~-~t  395 (435)
T 2vgl_M          319 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FA  395 (435)
T ss_dssp             EEEEEEECCSSCCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCCC--CCCCEEEEEEES-SC
T ss_pred             EEEEEEECCCCCCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCccc--CCCcEEEEEEEE-ec
Confidence            999999999999999999999999999999999999999999999999999999775333334  789999999999 99


Q ss_pred             ccccEEEEEEEEEc----CCCCCccceEEEEEeCcEEEEe
Q 014235          392 VSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL  427 (428)
Q Consensus       392 ~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~r~  427 (428)
                      +|||+|++|+|.++    ++|+|+|||||+|+||+|++|+
T Consensus       396 ~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~R~  435 (435)
T 2vgl_M          396 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  435 (435)
T ss_dssp             TTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred             ccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEEcC
Confidence            99999999999986    5899999999999999999995
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Back     alignment and structure
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A Back     alignment and structure
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Back     alignment and structure
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Back     alignment and structure
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A Back     alignment and structure
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4 Back     alignment and structure
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A Back     alignment and structure
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Back     alignment and structure
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Back     alignment and structure
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1 Back     alignment and structure
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 428
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 1e-101
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 3e-38
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 2e-23
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  300 bits (769), Expect = e-101
 Identities = 112/279 (40%), Positives = 169/279 (60%), Gaps = 14/279 (5%)

Query: 159 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLND 218
           + WR EGI+Y++NE+FLDV+E VN+L++  GQ++ + V G + M++YLSGMPECK G+ND
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 219 RILLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYR 271
           +I++E QG+        +  ++I +DD  FHQCVRL++F+++R+ISFIPPDG F+LM YR
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 272 LNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTS 331
               +     V   V    R+++E+ V  +S FK    A  +E+ +P   + S   V   
Sbjct: 121 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 180

Query: 332 MGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFT 391
            G A Y   + A++WKI+   G KE  + AE  L     ++     + PI + FE+P F 
Sbjct: 181 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKK--KWARPPISMNFEVP-FA 237

Query: 392 VSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELR 426
            SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct: 238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 100.0
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.96
d3cpta1116 MEK binding partner 1, MP1 {Human (Homo sapiens) [ 95.3
d2fh5a1129 Signal recognition particle receptor alpha subunit 91.36
d1nrja_155 Srx domain of the signal recognition particle rece 87.29
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-66  Score=499.23  Aligned_cols=265  Identities=43%  Similarity=0.828  Sum_probs=231.8

Q ss_pred             cccccCCCccccceEEEEEEEeeeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhhcCC-------CCCC
Q 014235          159 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGR-------STKG  231 (428)
Q Consensus       159 v~wR~~~~~~~~nei~vdV~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~-------~~~~  231 (428)
                      +|||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|||+|+|+|+|+||++...+.+..       ....
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~   80 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK   80 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence            699999999999999999999999999999999999999999999999999999999999887654321       1245


Q ss_pred             ceEEeccceeeeeeccccccCCceEEEeCCCCeEEEEEEEecCCC-CCcEEEEEEEEEccceEEEEEEEeeecCCCccee
Q 014235          232 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQV-KPLIWVEAQVERHSRSRVEILVKARSQFKERSTA  310 (428)
Q Consensus       232 ~~i~l~d~~fH~cV~~~~f~~~~~l~F~PPdG~f~Lm~Yr~~~~~-~P~~~v~~~~~~~~~~~~ei~l~~~~~~~~~~~~  310 (428)
                      .++.|+||+||+||+++.|+++|.|+|+||||+|+||+||++.+. +||. +.|+++..+++++++.++++++++.+..+
T Consensus        81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~-i~~~~~~~~~~~~~~~i~l~~~~~~~~~~  159 (277)
T d2pr9a1          81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFR-VIPLVREVGRTKLEVKVVIKSNFKPSLLA  159 (277)
T ss_dssp             CCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEE-EEEEEEEETTTEEEEEEEEEECSCTTCEE
T ss_pred             CceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcE-EEEEEEeccCcEEEEEEEEEeccCCCeee
Confidence            678999999999999999999999999999999999999998776 5554 56888877777999999999999999999


Q ss_pred             eeEEEEecCCCCCCCceEEeccceEEEeCCCcEEEEEeceeCCCCeeEEEEEEEecCCCCCCCCCCCCCCEEEEEEECcc
Q 014235          311 TNVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYF  390 (428)
Q Consensus       311 ~~v~v~iplP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~k~~g~~~~~l~~~i~~~~~~~~~~~~~~~~pi~v~F~ip~~  390 (428)
                      ++|.|+||+|.++..++++++.|+++|+.++++++|+|++++++++++|++++++++..+...+  .++|++|+|++| +
T Consensus       160 ~~v~I~iP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~~--~~~pi~v~F~ip-~  236 (277)
T d2pr9a1         160 QKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPPISMNFEVP-F  236 (277)
T ss_dssp             EEEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSCC--CCCCEEEEEEES-S
T ss_pred             eEEEEEeeCCCcccCceEEecCceEEEeccCCEEEEecccccCCccceEEEEEEeccCCCCccc--cCCcEEEEEEec-c
Confidence            9999999999999999999999999999999999999999999999999999999876655444  789999999999 8


Q ss_pred             cccccEEEEEEEEEc----CCCCCccceEEEEEeCcEEEEe
Q 014235          391 TVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL  427 (428)
Q Consensus       391 t~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~r~  427 (428)
                      ++|||+|++|+|.++    ++|+|+|||||+|+||+|++|.
T Consensus       237 t~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R~  277 (277)
T d2pr9a1         237 APSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  277 (277)
T ss_dssp             CTTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEECC
T ss_pred             cccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEECC
Confidence            999999999999873    4589999999999999999994
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition particle receptor alpha-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure