Citrus Sinensis ID: 014264

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKSKQEIQ
ccccccccccccHHHcccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcccccccEEEEEcccHHcHHHHHHHHHHHHcccccccccEEccccccccEEccccccccccccccccccccccccccccccccccccccEEEEEccccccccccEEEccccEEEEEccccccEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEcccccHHHHcccccccEEEEEEcccccccccccccccEEcHHHHHHHHcccccccccEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHccccccEEEccccHHHHHHHcccccccccccccccccccccccccccccccccccccccc
ccccccccccHHHHHHHHHcccEEEEEccccccccccccEEEEEEEccccHHHHHHHHHHHccccccEEEEEEcHHHHHHHHHHHHHHHHcccccccccHcccccccccccEEccccccccccccEcccccccccccEcccccccccccEEEEEEccccccHHHHHHccccccEEEEcccccccEcccccHHHHHHHHHHHHHHHHHccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEEcccHHHHHccccccEEEEEEcccccccccccccccccccHHHHHHccccccccccccccHHHcccccccccccccccccEEEEEcEEEcccccccccccccccccccccccccHHEEEEEcccccEEEEEcccHHHHHHHHcccccccccccccccHHHHcccccEEEccccccccHccc
madttygsccvdevgashvdadcvihyghtclsptstlpaffvfgkasintSNCIENLSkhaltngkPILVLYGLEYAHAIPHIREAVKVASssygsglkleiNFADVmctvitpskdhkslcgpaggctrhtigglvwnipdrkKMEEHLLFWIGSDNSAFANVVLTFNGceivrydateerlltdvsqplKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLvmgkpnpaklanfpecdvfinVSCAQTalldskeflapvitpfEAMLAfgrgtqwtGAYVMEFRDlmssspvegsdQAEEARFSFlkggyvedvaqpetengeeEKEGALALANAAEKALQLRdrsldpivkgtaksGAEYFVSrsyhglemqcnssspepyaigrsgkasgyddekskqeiq
MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRydateerlltdvsqplkiLKRRYYLVEkakdaniigVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGrsgkasgyddekskqeiq
MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETengeeekegalalanaaekaLQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKSKQEIQ
****TYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDL******************FL***Y************************************************AEYFVSRSYH***********************************
MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMC******************CTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSS*******************************************************************SGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKA*************
MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMS***********EARFSFLKGGYVEDVAQ***********GALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRS****************
**DTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPV******EEARFSFLKGGYVED***************AL*LANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDE*******
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MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKSKQEIQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query427 2.2.26 [Sep-21-2011]
Q5ZKI2477 Diphthamide biosynthesis yes no 0.918 0.821 0.353 1e-63
A4QN59498 Diphthamide biosynthesis yes no 0.911 0.781 0.323 2e-63
A7SKJ3531 Diphthamide biosynthesis N/A no 0.903 0.726 0.323 8e-63
Q10206503 Diphthamide biosynthesis yes no 0.941 0.799 0.318 2e-61
Q6DE00478 Diphthamide biosynthesis N/A no 0.903 0.807 0.316 7e-57
P0CN20515 Diphthamide biosynthesis yes no 0.941 0.780 0.279 9e-44
P0CN21515 Diphthamide biosynthesis N/A no 0.941 0.780 0.279 9e-44
Q4WN99565 Diphthamide biosynthesis yes no 0.915 0.692 0.298 2e-42
Q5B2Q1582 Diphthamide biosynthesis yes no 0.754 0.553 0.304 5e-40
Q59SJ9529 Diphthamide biosynthesis N/A no 0.911 0.735 0.283 4e-38
>sp|Q5ZKI2|DPH2_CHICK Diphthamide biosynthesis protein 2 OS=Gallus gallus GN=DPH2 PE=2 SV=1 Back     alignment and function desciption
 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 152/430 (35%), Positives = 218/430 (50%), Gaps = 38/430 (8%)

Query: 1   MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSK 60
           + DTTYGSCCVDEV A HV A  V+HYG  CLSP   LP   VFG+  ++   C E   +
Sbjct: 79  LGDTTYGSCCVDEVAAEHVSAGAVVHYGPACLSPCRKLPVLHVFGRQPLDVGRCAEVFRE 138

Query: 61  HALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHK 120
                   ++VL  + YAHA+  +    K     Y +     I F++V+C          
Sbjct: 139 LYPERQSRVVVLSDVVYAHAMGELE---KQLCHEYPN-----IIFSEVVC---------- 180

Query: 121 SLCGPAGGCTRHTIGGLVWNIPDRKKME--EHL----LFWIGSDNSAFANVVLTFNGCEI 174
                 G     T+ G V     R  ME  E L    +F++G++  A  + +LT+N    
Sbjct: 181 ------GDAPSPTLPGEVRQFGRRFHMEAAEELQDCSMFYVGAEGLALTSFMLTWNRFPF 234

Query: 175 VRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELI 234
             +D        +     + L RR YLVE+A+DA+++G+LVGTLGVAGYL ++  + +L+
Sbjct: 235 SSFDPATGHGRRETLNVNRALMRRLYLVERARDAHVVGILVGTLGVAGYLDVLEHLHQLV 294

Query: 235 TKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFG 294
            +AGK++YTL +GKPNPAKLANF E D+F+ V+CAQ +LLDS EF  P++TP+E  LA  
Sbjct: 295 RRAGKRSYTLSVGKPNPAKLANFLEVDIFVLVACAQNSLLDSSEFYRPIVTPYELELACN 354

Query: 295 RGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGAL 354
              +WTG Y+ +FRDL+      G+    E   +      + DV+    E         L
Sbjct: 355 PAREWTGNYLTDFRDLLP-----GACAHIELPPAVPAAEAIPDVSLITGEMRATHLCDPL 409

Query: 355 ALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKA 414
           A    +   L  RD++            A +  SRS+ GLE Q   ++      GR G A
Sbjct: 410 APQPPSSTTLACRDQTR---ALAEMSPAATFLESRSWRGLEQQLGKTAVSKAVQGRRGIA 466

Query: 415 SGYDDEKSKQ 424
             Y+DE  +Q
Sbjct: 467 IAYEDEGREQ 476
Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.
Gallus gallus (taxid: 9031)
>sp|A4QN59|DPH2_DANRE Diphthamide biosynthesis protein 2 OS=Danio rerio GN=dph2 PE=2 SV=1 Back     alignment and function description
>sp|A7SKJ3|DPH2_NEMVE Diphthamide biosynthesis protein 2 OS=Nematostella vectensis GN=dph2 PE=3 SV=1 Back     alignment and function description
>sp|Q10206|DPH2_SCHPO Diphthamide biosynthesis protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dph2 PE=3 SV=1 Back     alignment and function description
>sp|Q6DE00|DPH2_XENLA Diphthamide biosynthesis protein 2 OS=Xenopus laevis GN=dph2 PE=2 SV=1 Back     alignment and function description
>sp|P0CN20|DPH2_CRYNJ Diphthamide biosynthesis protein 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=DPH2 PE=3 SV=1 Back     alignment and function description
>sp|P0CN21|DPH2_CRYNB Diphthamide biosynthesis protein 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=DPH2 PE=3 SV=1 Back     alignment and function description
>sp|Q4WN99|DPH2_ASPFU Diphthamide biosynthesis protein 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dph2 PE=3 SV=1 Back     alignment and function description
>sp|Q5B2Q1|DPH2_EMENI Diphthamide biosynthesis protein 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dph2 PE=3 SV=1 Back     alignment and function description
>sp|Q59SJ9|DPH2_CANAL Diphthamide biosynthesis protein 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=DPH2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query427
359478316506 PREDICTED: diphthamide biosynthesis prot 0.997 0.841 0.709 1e-179
255579442499 diphteria toxin resistance protein 2, dp 0.983 0.841 0.690 1e-175
224068785496 predicted protein [Populus trichocarpa] 0.985 0.848 0.682 1e-171
356555374485 PREDICTED: diphthamide biosynthesis prot 0.981 0.863 0.663 1e-166
449468836500 PREDICTED: diphthamide biosynthesis prot 0.981 0.838 0.630 1e-160
357436535 612 Diphthamide biosynthesis protein 2 conta 0.983 0.686 0.627 1e-155
297820792493 diphthamide synthesis DPH2 family protei 0.974 0.843 0.612 1e-153
356547432456 PREDICTED: diphthamide biosynthesis prot 0.957 0.896 0.630 1e-150
15231723491 diphthamide synthesis DPH2 family protei 0.969 0.843 0.600 1e-150
242032299514 hypothetical protein SORBIDRAFT_01g00172 0.981 0.815 0.538 1e-136
>gi|359478316|ref|XP_002273627.2| PREDICTED: diphthamide biosynthesis protein 2-like [Vitis vinifera] gi|296084273|emb|CBI24661.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 313/441 (70%), Positives = 363/441 (82%), Gaps = 15/441 (3%)

Query: 1   MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSK 60
           MADTTYGSCCVDEVGASH++ADCV+HYGHTCLSPTS LPAFFVFGKA I+ SNC ENLS 
Sbjct: 66  MADTTYGSCCVDEVGASHINADCVVHYGHTCLSPTSNLPAFFVFGKAPISISNCAENLST 125

Query: 61  HALTNGKPILVLYGLEYAHAIPHIREAVKVASSSY-GSGLKLEINFADVMCTVITPSKDH 119
           +ALT GK I+VL+GLEY+HAI  I+EA+ + SS   GS   LE +FA+VMC+V+ PSKD 
Sbjct: 126 YALTQGKHIMVLFGLEYSHAIEMIKEALMLESSKLSGSTSNLEFHFAEVMCSVMNPSKDC 185

Query: 120 KSLCGPAGGC--------------TRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANV 165
            +  G  G                TR++IGGL WN+P+  +ME++LL WIG+DNSAFANV
Sbjct: 186 TTSNGHLGSVGSFTANEGFGKATGTRYSIGGLAWNLPEGHRMEDYLLVWIGADNSAFANV 245

Query: 166 VLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLH 225
           VLTFNGC+IVRYDA + RL+TD+SQ  +ILKRRYYLVEKAKD+NIIG+LVGTLGVAGYLH
Sbjct: 246 VLTFNGCDIVRYDAVDNRLVTDLSQQRRILKRRYYLVEKAKDSNIIGLLVGTLGVAGYLH 305

Query: 226 MIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVIT 285
           MI QMKELI  AGKKAYTLVMG+PNPAKLANFPECDVFI VSCAQTALLDSKEFLAPVIT
Sbjct: 306 MIRQMKELIAAAGKKAYTLVMGRPNPAKLANFPECDVFIYVSCAQTALLDSKEFLAPVIT 365

Query: 286 PFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETEN 345
           PFEAMLAF RG+QWTGAYVMEFRDL+SSSPVE  +Q+EEARFSFL+GGYVED    ETE+
Sbjct: 366 PFEAMLAFNRGSQWTGAYVMEFRDLISSSPVEVRNQSEEARFSFLQGGYVEDFDLKETED 425

Query: 346 GEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEP 405
            EE+++GALALA A EKALQ+RD+  + ++KGTAKSG E+F +RSYHGLEM  N SSPEP
Sbjct: 426 AEEDEDGALALAYATEKALQVRDKHPNSLIKGTAKSGGEFFAARSYHGLEMHSNDSSPEP 485

Query: 406 YAIGRSGKASGYDDEKSKQEI 426
           Y IGR GKASGY+ EK  +  
Sbjct: 486 YLIGRVGKASGYEGEKGNENF 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579442|ref|XP_002530564.1| diphteria toxin resistance protein 2, dph2, putative [Ricinus communis] gi|223529863|gb|EEF31794.1| diphteria toxin resistance protein 2, dph2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224068785|ref|XP_002326199.1| predicted protein [Populus trichocarpa] gi|222833392|gb|EEE71869.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555374|ref|XP_003546007.1| PREDICTED: diphthamide biosynthesis protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449468836|ref|XP_004152127.1| PREDICTED: diphthamide biosynthesis protein 2-like [Cucumis sativus] gi|449484704|ref|XP_004156957.1| PREDICTED: diphthamide biosynthesis protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357436535|ref|XP_003588543.1| Diphthamide biosynthesis protein 2 containing protein expressed [Medicago truncatula] gi|355477591|gb|AES58794.1| Diphthamide biosynthesis protein 2 containing protein expressed [Medicago truncatula] Back     alignment and taxonomy information
>gi|297820792|ref|XP_002878279.1| diphthamide synthesis DPH2 family protein [Arabidopsis lyrata subsp. lyrata] gi|297324117|gb|EFH54538.1| diphthamide synthesis DPH2 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356547432|ref|XP_003542116.1| PREDICTED: diphthamide biosynthesis protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|15231723|ref|NP_191522.1| diphthamide synthesis DPH2 family protein [Arabidopsis thaliana] gi|6996299|emb|CAB75460.1| putative protein [Arabidopsis thaliana] gi|19715609|gb|AAL91627.1| AT3g59630/T16L24_180 [Arabidopsis thaliana] gi|53749154|gb|AAU90062.1| At3g59630 [Arabidopsis thaliana] gi|332646426|gb|AEE79947.1| diphthamide synthesis DPH2 family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242032299|ref|XP_002463544.1| hypothetical protein SORBIDRAFT_01g001720 [Sorghum bicolor] gi|241917398|gb|EER90542.1| hypothetical protein SORBIDRAFT_01g001720 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query427
TAIR|locus:2097513491 AT3G59630 "AT3G59630" [Arabido 0.969 0.843 0.577 8.1e-131
UNIPROTKB|F1N8G4477 DPH2 "Diphthamide biosynthesis 0.391 0.350 0.443 2.1e-63
UNIPROTKB|F1P2X6481 DPH2 "Diphthamide biosynthesis 0.391 0.347 0.443 2.1e-63
UNIPROTKB|Q5ZKI2477 DPH2 "Diphthamide biosynthesis 0.391 0.350 0.443 2.1e-63
POMBASE|SPBC17D1.02503 dph2 "diphthamide biosynthesis 0.688 0.584 0.310 1.1e-60
ZFIN|ZDB-GENE-030219-100498 dph2 "DPH2 homolog (S. cerevis 0.946 0.811 0.346 5.7e-59
DICTYBASE|DDB_G0295687588 dph2 "diphthamide biosynthesis 0.405 0.294 0.385 1.8e-51
FB|FBgn0038272469 CG7265 [Drosophila melanogaste 0.409 0.373 0.335 6.5e-37
UNIPROTKB|G4MYQ5601 MGG_12288 "Diphthamide biosynt 0.667 0.474 0.331 2.5e-36
ASPGD|ASPL0000028132582 AN5179 [Emericella nidulans (t 0.283 0.207 0.408 9.4e-36
TAIR|locus:2097513 AT3G59630 "AT3G59630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
 Identities = 252/436 (57%), Positives = 318/436 (72%)

Query:     1 MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSK 60
             MADTTYGSCC+DEVGA H+D++CV+HYG TCLSPTS LPAFFVFGKASIN S+C+++L  
Sbjct:    62 MADTTYGSCCIDEVGALHIDSECVVHYGQTCLSPTSVLPAFFVFGKASINVSSCVKHLID 121

Query:    61 HALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKD-H 119
             +A  + KPI++LYGLEYAH IP IRE + ++ +        +++ A+V+C+ I+PSKD  
Sbjct:   122 YASKSDKPIMILYGLEYAHVIPQIREELGLSKTDS------QLSVANVLCSFISPSKDPR 175

Query:   120 KSLCGPA-----------GGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLT 168
             +S+  P                 + +GGL W++P+  K+E++LLFWIGSD+SAFANVVLT
Sbjct:   176 ESMEHPRPYSESDSSDSLSSSRSYRLGGLTWDLPEGSKIEDYLLFWIGSDSSAFANVVLT 235

Query:   169 FNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIH 228
             FNGC+IVRYDA E+ L+T+  Q  +ILKRRYYLVEKAKDANIIG+LVGTLGVAGYLHMIH
Sbjct:   236 FNGCDIVRYDAEEDSLVTEFYQQRRILKRRYYLVEKAKDANIIGILVGTLGVAGYLHMIH 295

Query:   229 QMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFE 288
              M+ LI+ AGKK+Y L MG+PNPAKLANFPECDVFI +SCAQTALLDSKEF++PVITPFE
Sbjct:   296 HMQALISAAGKKSYILAMGRPNPAKLANFPECDVFIYISCAQTALLDSKEFMSPVITPFE 355

Query:   289 AMLAFGRGTQWTGAYVMEFRDLMSS--SPVEGSDQAEEARFSFLKGGYVED-VAQPETXX 345
             A LAF RG++WTGAY+M F+D+++S  S  E    +EE RFSF +GGYVED     +   
Sbjct:   356 ANLAFSRGSEWTGAYLMHFQDVINSVKSESEAHIGSEEPRFSFFQGGYVEDHKTNDQAKN 415

Query:   346 XXXXXXXXXXXXXXXXXXLQLRDRSLDPIVKGTA-KSGAEYFVSRSYHGLEMQCNSSSPE 404
                               LQLR    + + K TA KSG EYF++R Y GLE+   ++ PE
Sbjct:   416 GEEDTGETMTLVQAAEKALQLRGNDHNSLTKQTAAKSGPEYFLNRVYRGLEINSENTLPE 475

Query:   405 PYAIGRSGKASGYDDE 420
             PY +GRSGKASGY  E
Sbjct:   476 PYIVGRSGKASGYKHE 491
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA
GO:0006865 "amino acid transport" evidence=RCA
GO:0015824 "proline transport" evidence=RCA
UNIPROTKB|F1N8G4 DPH2 "Diphthamide biosynthesis protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2X6 DPH2 "Diphthamide biosynthesis protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKI2 DPH2 "Diphthamide biosynthesis protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
POMBASE|SPBC17D1.02 dph2 "diphthamide biosynthesis protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030219-100 dph2 "DPH2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0295687 dph2 "diphthamide biosynthesis protein 2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0038272 CG7265 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|G4MYQ5 MGG_12288 "Diphthamide biosynthesis protein 2" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000028132 AN5179 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5ZKI2DPH2_CHICKNo assigned EC number0.35340.91800.8218yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034648001
SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (482 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00023426001
SubName- Full=Chromosome undetermined scaffold_30, whole genome shotgun sequence; (426 aa)
   •• ••0.593
GSVIVG00019376001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)
   •    0.480
GSVIVG00014439001
RecName- Full=Diphthine synthase; EC=2.1.1.98;; Required for the methylation step in diphthamid [...] (285 aa)
   •  • 0.463
GSVIVG00033408001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)
   •    0.460

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
TIGR00322319 TIGR00322, diphth2_R, diphthamide biosynthesis enz 4e-96
TIGR00272496 TIGR00272, DPH2, diphthamide biosynthesis protein 1e-67
pfam01866300 pfam01866, Diphthamide_syn, Putative diphthamide s 3e-63
COG1736347 COG1736, DPH2, Diphthamide synthase subunit DPH2 [ 2e-44
TIGR03682308 TIGR03682, arCOG04112, diphthamide biosynthesis en 2e-15
>gnl|CDD|232919 TIGR00322, diphth2_R, diphthamide biosynthesis enzyme Dph1/Dph2 domain Back     alignment and domain information 
 Score =  290 bits (745), Expect = 4e-96
 Identities = 108/299 (36%), Positives = 160/299 (53%), Gaps = 35/299 (11%)

Query: 1   MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSP-TSTLPAFFVFGKASINTSNCIENLS 59
           + DTTYG+CCVD+V A H+ AD +IHYGH+CLSP TS +P  +VF    I+  + +E L 
Sbjct: 50  LGDTTYGACCVDDVAAKHLGADLIIHYGHSCLSPITSRIPVLYVFVYIPIDVEHLVEALK 109

Query: 60  KHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDH 119
           ++    GK I ++  ++Y HA+  +++              LE    +    +I   K  
Sbjct: 110 ENLPDKGKRIALVTTVQYIHALDEVKK-------------ILEEAGYE--PVIIPQGKPR 154

Query: 120 KSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYD- 178
               G   GCT             R    + +L +IG        + L     ++  YD 
Sbjct: 155 VLSPGQVLGCTFP---------ALRNDEVDAVLIFIGDGRFHLLGLALATPKPKVYVYDP 205

Query: 179 ----ATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELI 234
                TEE    +     K+L+RRY L+EKAKDA  +G++VGTLG  G L +  ++KEL+
Sbjct: 206 YSGELTEEEYDAN-----KLLRRRYALIEKAKDAKKVGIIVGTLGGQGRLELAERLKELL 260

Query: 235 TKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAF 293
            KAGKKAY + +G+ NPAKLANFPE D F+  +C + ++ D K+F  PV+TP+E  +A 
Sbjct: 261 KKAGKKAYLISVGEINPAKLANFPEIDAFVQTACPRLSIDDGKDFYKPVLTPYELEMAL 319

Archaea and Eukaryotes, but not Eubacteria, share the property of having a covalently modified residue, 2'-[3-carboxamido-3-(trimethylammonio)propyl]histidine, as a part of a cytosolic protein. The modified His, termed diphthamide, is part of translation elongation factor EF-2 and is the site for ADP-ribosylation by diphtheria toxin. This model includes both Dph1 and Dph2 from Saccharomyces cerevisiae, although only Dph2 is found in the Archaea (see TIGR03682). Dph2 has been shown to act analogously to the radical SAM (rSAM) family (pfam04055), with 4Fe-4S-assisted cleavage of S-adenosylmethionine to create a free radical, but a different organic radical than in rSAM. Length = 319
>gnl|CDD|232900 TIGR00272, DPH2, diphthamide biosynthesis protein 2 Back     alignment and domain information
>gnl|CDD|216748 pfam01866, Diphthamide_syn, Putative diphthamide synthesis protein Back     alignment and domain information
>gnl|CDD|224650 COG1736, DPH2, Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234308 TIGR03682, arCOG04112, diphthamide biosynthesis enzyme Dph2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 427
TIGR00272496 DPH2 diphthamide biosynthesis protein 2. This prot 100.0
KOG2648453 consensus Diphthamide biosynthesis protein [Transl 100.0
TIGR00322332 diphth2_R diphthamide biosynthesis protein 2-relat 100.0
PF01866307 Diphthamide_syn: Putative diphthamide synthesis pr 100.0
TIGR03682308 arCOG04112 arCOG04112 universal archaeal diphthami 100.0
COG1736347 DPH2 Diphthamide synthase subunit DPH2 [Translatio 100.0
>TIGR00272 DPH2 diphthamide biosynthesis protein 2 Back     alignment and domain information 
Probab=100.00  E-value=1.4e-103  Score=819.98  Aligned_cols=399  Identities=30%  Similarity=0.494  Sum_probs=321.4

Q ss_pred             CCCCcccccccChhhhcccCCcEEEEecCCCCCCCCCCCeEEEccccCCChHHHHHHHhhhhcCCCCcEEEEecccchhh
Q 014264            1 MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHA   80 (427)
Q Consensus         1 LaDtsYGsCCVDevaA~hv~aD~iVHyGhaCls~~~~lpv~YVf~~~~ld~~~~~~~l~~~~~~~~~~v~l~~dvqy~~~   80 (427)
                      |||||||||||||+||+|++||+|||||||||+|++++||+|||++.++|++++++.+++.+++..++|+|++|+||.|+
T Consensus        87 laDtsYGaCCVDevaA~hv~aD~iVHyGhsCLsp~~~lPviYVf~~~~~d~~~~~~~~~~~~~~~~~kV~l~~dvqy~~~  166 (496)
T TIGR00272        87 LADTAYSSCCVDEVAAEHVHAEAVVHFGDACLSAIQNLPVVYVFGTPPIDLALVVENFQRAFPDLSSKICLMADAPFSKH  166 (496)
T ss_pred             EeCCcccccccCHHHHhhcCCCEEEEeCCCCCCCCCCCCEEEEeccCCCCHHHHHHHHHHhccccCCeEEEEEchhHHHH
Confidence            79999999999999999999999999999999999999999999999999999999998776654568999999999999


Q ss_pred             hHHHHHHHHhhccCCCCCcceeeeeecceeeeecCCCCCCCCCCCCCCcccccccCcccccCCccCccceEEEEEcCCcc
Q 014264           81 IPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNS  160 (427)
Q Consensus        81 l~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~gc~~~~~~~~~~~~~~~~~~~~~~i~~Ig~~~~  160 (427)
                      ++++++.|++.....+  ...++.++     ...|..  ....++++||++....        +...+++.+||||++.+
T Consensus       167 ~~~l~~~L~~~~~~~~--~~~~~~~~-----~~~~~~--~~~~~~vlGc~~~~~~--------~~~~~~~~~l~IG~~~~  229 (496)
T TIGR00272       167 QSQLYNILKEVLPGDL--HYTNIIYP-----QVNTSA--VEEKFVTIGRTFHVPE--------DVDQQEKNLVLFGQHSS  229 (496)
T ss_pred             HHHHHHHHHhhccccc--cccceecc-----cccccc--CCCCceecCccccCcc--------ccccccceEEEEcCCCc
Confidence            9999999986432100  01112221     112221  1124678999865432        12334667999999777


Q ss_pred             -hhhHHHhhcC-C-ceEEEecCCCCceecccCc-HHHHHHHHHHHHHHHhcCCeEEEEEcCCcccCcHHHHHHHHHHHHH
Q 014264          161 -AFANVVLTFN-G-CEIVRYDATEERLLTDVSQ-PLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITK  236 (427)
Q Consensus       161 -~l~~l~l~~~-~-~~v~~yDP~~~~~~~~~~~-~~r~L~rRy~~I~ka~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~  236 (427)
                       +|++++|+++ . ++||+|||+++++..+... ++|+|||||++|+|||+|++||||||||++|+|++++++|+++|++
T Consensus       230 g~f~~l~l~~~~~~~~v~~~dP~~~~~~~~~~~~~~~~L~rRy~~I~kA~~A~~~GIlVgTL~~q~~~~ii~~l~~li~~  309 (496)
T TIGR00272       230 EDLHLIHLTTYQDLSTVFQFVPIFDPILPESVTGPFPSLRRRYKLVHVARDAGCIGIVVGTLGVRNTRETINELRKMIKT  309 (496)
T ss_pred             hhhhHhhhhcCCCCCceEEECCCCCcceecccchHHHHHHHHHHHHHHHhcCCEEEEEEecCccCCCHHHHHHHHHHHHH
Confidence             8889988643 4 6799999999998766545 8999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEEcCCCCHHHHcCCCCCCEEEEecCCCcccccccCCCCcccCHHHHHHhhCCCCccccceeeccccccCCC--
Q 014264          237 AGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSS--  314 (427)
Q Consensus       237 ~GKK~y~~~vgkln~aKLaNF~eiD~fVlvaCPr~si~d~~~f~kPvlTP~El~~aL~~~~~w~g~y~~Df~~~l~~~--  314 (427)
                      +|||+|+|+||||||+|||||++||+||+|||||++|+|+++|+||||||||++|||+.+.+|.++|..+|..+.+..  
T Consensus       310 ~GkK~yl~~vgkinpaKLaNF~eID~fV~vaCPr~sidd~~~F~KPVlTP~ElelAL~~~~~w~~~~~~~~~~~~~~~~~  389 (496)
T TIGR00272       310 AGKKHYLFVVGKPNPAKLANFEDIDIFVLLGCSQSGIIDSNEFYRPIVTPFELNLALSEEVTWVVDFRDSIDEIEQLLGG  389 (496)
T ss_pred             cCCcEEEEEeCCCCHHHHhCCCCCCEEEEccCCCcccccHhhCCCceecHHHHHHHhCCcccccchHHHHhhhhhhcccc
Confidence            999999999999999999999999999999999999999999999999999999999987789999988888775421  


Q ss_pred             C----CCCCCcccccccccccCccccccCCCCCCCcchhhhhHHHHhhhhhhhhhhccCCCcceeecccchHHHHhhcCC
Q 014264          315 P----VEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRS  390 (427)
Q Consensus       315 ~----~~~~~~~~~p~fslitG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~a~~L~~Rt  390 (427)
                      .    .+..+++++|+||||||+|++++++++...+.+...    ..+..+.+++.+.+.+.+++++++|+||+||++||
T Consensus       390 ~~~~~~~~~~~~~~p~fslitG~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~l~~Rt  465 (496)
T TIGR00272       390 QDTISPSTTSDEAAPEFSLIRGKYTSTSRPLRALTHLELEA----ADNDDSKQSTTRHTASGAVIKGTVSTSASALQNRS  465 (496)
T ss_pred             cccCCCccccccCCCceeccccceeecCCccchhhhccccc----cCCCCccceeecccCcceeeccccccHHHHhhcCc
Confidence            1    111223468999999999998877754222111000    00112234544444333566788899999999999


Q ss_pred             cccCCCCCCC-CCCcccccCCcccccCccCC
Q 014264          391 YHGLEMQCNS-SSPEPYAIGRSGKASGYDDE  420 (427)
Q Consensus       391 ~~GL~~~~g~-~~~~~~~~Gr~GiA~~Y~~e  420 (427)
                      |||||+++|+ ++++.++|||+||||||+++
T Consensus       466 w~GL~~~~~~~~~~a~~~eGrsGIA~gY~~~  496 (496)
T TIGR00272       466 WKGLGDDVDSTEVDAKIEEGISGIARGYGGD  496 (496)
T ss_pred             eeCCCCCcCCCCCcceeecCCccccccCCCC
Confidence            9999999976 45789999999999999865

This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain Back     alignment and domain information
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis Back     alignment and domain information
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein Back     alignment and domain information
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
3lzc_A378 Crystal Structure Of Dph2 From Pyrococcus Horikoshi 3e-09
>pdb|3LZC|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii Length = 378 Back     alignment and structure 
Iteration: 1

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 47/300 (15%)
Query: 3   DTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHA 62
           +  YG+C   +  A  V  D +IH GH+ +     +P  FV   A ++    ++      
Sbjct: 89  EINYGACDPADREAKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVSVVEALKENIGEI 148
Query: 63  LTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSL 122
              G+ I+V    ++ H +   +E ++        G ++ I   D             S 
Sbjct: 149 KKLGRKIIVTTTAQHIHQLKEAKEFLE------SEGFEVSIGRGDSRI----------SW 192
Query: 123 CGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEE 182
            G   GC          N    K   E +LF IGS    F  + L           AT +
Sbjct: 193 PGQVLGC----------NYSVAKVRGEGILF-IGS--GIFHPLGLAV---------ATRK 230
Query: 183 RLLT--------DVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELI 234
           ++L             P + +++R+  + KA DA   GV+V        L    ++ +L+
Sbjct: 231 KVLAIDPYTKAFSWIDPERFIRKRWAQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLL 290
Query: 235 TKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFG 294
            K G++A  +VM   N  KL  FP  + ++ V+C +  L D   +  PV+TP E  +  G
Sbjct: 291 KKHGREARLIVMNDVNYHKLEGFP-FEAYVVVACPRVPLDDYGAWRKPVLTPKEVEILLG 349

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
3lzd_A378 DPH2; diphthamide biosynthesis, radical SAM enzyme 5e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A Length = 378 Back     alignment and structure
 Score =  214 bits (546), Expect = 5e-66
 Identities = 58/306 (18%), Positives = 115/306 (37%), Gaps = 31/306 (10%)

Query: 1   MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSK 60
             +  YG+C   +  A  V  D +IH GH+ +     +P  FV   A ++    ++    
Sbjct: 87  HGEINYGACDPADREAKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVSVVEALKENIG 146

Query: 61  HALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHK 120
                G+ I+V    ++ H +   +E ++                      V     D +
Sbjct: 147 EIKKLGRKIIVTTTAQHIHQLKEAKEFLESEGF-----------------EVSIGRGDSR 189

Query: 121 SLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDAT 180
                         G ++       K+    + +IGS       + +     +++  D  
Sbjct: 190 ISWP----------GQVLGCNYSVAKVRGEGILFIGSGIFHPLGLAVA-TRKKVLAIDPY 238

Query: 181 EERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKK 240
            +        P + +++R+  + KA DA   GV+V        L    ++ +L+ K G++
Sbjct: 239 TKAF--SWIDPERFIRKRWAQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGRE 296

Query: 241 AYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWT 300
           A  +VM   N  KL  FP  + ++ V+C +  L D   +  PV+TP E  +  G   ++ 
Sbjct: 297 ARLIVMNDVNYHKLEGFP-FEAYVVVACPRVPLDDYGAWRKPVLTPKEVEILLGLREEYE 355

Query: 301 GAYVME 306
              ++ 
Sbjct: 356 FDEILG 361
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query427
3lzd_A378 DPH2; diphthamide biosynthesis, radical SAM enzyme 100.0
1byk_A255 Protein (trehalose operon repressor); LACI family, 83.09
3hs3_A277 Ribose operon repressor; PSI-II, NYSGXRC, periplas 80.72
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A Back     alignment and structure
Probab=100.00  E-value=4.9e-80  Score=621.56  Aligned_cols=272  Identities=22%  Similarity=0.341  Sum_probs=243.6

Q ss_pred             CCCCcccccccChhhhcccCCcEEEEecCCCCCCCCCCCeEEEccccCCChHHHHHHHhhhhcCCCCcEEEEecccchhh
Q 014264            1 MADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHA   80 (427)
Q Consensus         1 LaDtsYGsCCVDevaA~hv~aD~iVHyGhaCls~~~~lpv~YVf~~~~ld~~~~~~~l~~~~~~~~~~v~l~~dvqy~~~   80 (427)
                      |||||||||||||++|+|++||+|||||||||++++++||+|||++.++|++++++.+.+.+.+..++|+|++|+||.|+
T Consensus        87 lgDttYGACCVDe~aA~~v~aD~lVHyGHsCL~~~~~lpvlYVf~~~~iD~~~~~~~~~~~~~~~~~~i~L~~tiq~~~~  166 (378)
T 3lzd_A           87 HGEINYGACDPADREAKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVSVVEALKENIGEIKKLGRKIIVTTTAQHIHQ  166 (378)
T ss_dssp             ECSCCCCTTSCCHHHHHHTTCSEEEEEECCCCSCCCSSCEEEEECCCCCCCHHHHHHTHHHHHTTCSEEEEEECGGGGGG
T ss_pred             EcCCcccCcccCHHHHhhcCCCEEEEcCCCcCCcccCCCEEEEeccCCCCHHHHHHHHHHhccCcCCeEEEEEcHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999998877655679999999999999


Q ss_pred             hHHHHHHHHhhccCCCCCcceeeeeecceeeeecCCCCCCCCCCCCCCcccccccCcccccCCccCccceEEEEEcCCcc
Q 014264           81 IPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNS  160 (427)
Q Consensus        81 l~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~gc~~~~~~~~~~~~~~~~~~~~~~i~~Ig~~~~  160 (427)
                      ++++++.|++.|+        ++.+        .+....+.++|+++||++....         .+.+  .++|||+|.|
T Consensus       167 l~~~~~~L~~~g~--------~v~i--------~~~~~~~~~~gqvLGC~~~~~~---------~~~d--~~lyvG~g~F  219 (378)
T 3lzd_A          167 LKEAKEFLESEGF--------EVSI--------GRGDSRISWPGQVLGCNYSVAK---------VRGE--GILFIGSGIF  219 (378)
T ss_dssp             HHHHHHHHHHTTC--------EEEC--------CCCCTTCSSTTBCBTTBCGGGC---------SSCS--EEEEESSSSH
T ss_pred             HHHHHHHHHHcCC--------eEEe--------cCCCCCCCCCCccccccCCCcc---------cCCc--eEEEEcCCch
Confidence            9999999998764        2222        1222334568999999876431         1223  6789999999


Q ss_pred             hhhHHHhhcCCceEEEecCCCCceecccCcHHHHHHHHHHHHHHHhcCCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCc
Q 014264          161 AFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKK  240 (427)
Q Consensus       161 ~l~~l~l~~~~~~v~~yDP~~~~~~~~~~~~~r~L~rRy~~I~ka~~A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK  240 (427)
                      |+++++|+ +.+++|+|||+++++...  +.+|+|||||++|+|||+|++|||||||||+|+|++++++|+++|+++|||
T Consensus       220 H~~~l~l~-~~~~v~~yDP~s~~~~~~--~~~~~l~rR~~~I~kA~dA~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk  296 (378)
T 3lzd_A          220 HPLGLAVA-TRKKVLAIDPYTKAFSWI--DPERFIRKRWAQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGRE  296 (378)
T ss_dssp             HHHHHHHH-HCSEEEEECTTTCCEEEC--CCHHHHHHHHHHHHHHTTCCEEEEEEECSTTTCCHHHHHHHHHHHHHTTCE
T ss_pred             hHHHHHhc-cCCcEEEECCCCCceeec--cHHHHHHHHHHHHHHHhcCCEEEEEEeCCccCCCHHHHHHHHHHHHHcCCc
Confidence            99999999 899999999999987654  389999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCHHHHcCCCCCCEEEEecCCCcccccccCCCCcccCHHHHHHhhCCCCccccceeecc
Q 014264          241 AYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEF  307 (427)
Q Consensus       241 ~y~~~vgkln~aKLaNF~eiD~fVlvaCPr~si~d~~~f~kPvlTP~El~~aL~~~~~w~g~y~~Df  307 (427)
                      +|+|+||||||+||+|| +||+||+|||||++|||+++|+||||||||++|||+.+.    .|.+|+
T Consensus       297 ~y~i~vg~inp~KLanF-~iD~fV~vaCPrlsidd~~~F~KPvLTPyE~evAL~~~~----~y~~de  358 (378)
T 3lzd_A          297 ARLIVMNDVNYHKLEGF-PFEAYVVVACPRVPLDDYGAWRKPVLTPKEVEILLGLRE----EYEFDE  358 (378)
T ss_dssp             EEEEEESSCCHHHHTTS-CCSEEEECSCTHHHHSCCSCCSSCEECHHHHHHHTTSCC----SCCCCC
T ss_pred             EEEEEeCCCCHHHHhCC-CCCEEEEecCCCccccchhhCCCcccCHHHHHHHhCCCC----CCCCcc
Confidence            99999999999999999 699999999999999999999999999999999999854    566554
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1 Back     alignment and structure
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query427
d1byka_255 Trehalose repressor, C-terminal domain {Escherichi 90.72
d2fz5a1137 Flavodoxin {Megasphaera elsdenii [TaxId: 907]} 86.59
d2nzug1275 Glucose-resistance amylase regulator CcpA, C-termi 85.12
d1oboa_169 Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 11 84.03
d1dbqa_282 Purine repressor (PurR), C-terminal domain {Escher 82.56
d1czna_169 Flavodoxin {Synechococcus elongatus PCC 7942 [TaxI 80.84
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Trehalose repressor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.72  E-value=0.2  Score=44.00  Aligned_cols=76  Identities=9%  Similarity=0.124  Sum_probs=56.4

Q ss_pred             CCeEEEEEcCCcccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcC----C--CCCCEEEEecCCCcccccccCCCC
Q 014264          208 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLAN----F--PECDVFINVSCAQTALLDSKEFLA  281 (427)
Q Consensus       208 A~~iGIlvgTl~~q~~~~~i~~l~~li~~~GKK~y~~~vgkln~aKLaN----F--~eiD~fVlvaCPr~si~d~~~f~k  281 (427)
                      -++||+|+-++.-..+..+++.|.+.++++|....++. .+-++++..+    +  ..+|.+++.++.............
T Consensus         2 ~k~Igvi~p~~~~~~~~~~~~~i~~~~~~~Gy~~~~~~-s~~d~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   80 (255)
T d1byka_           2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMME-SQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQS   80 (255)
T ss_dssp             CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTTTSGGGSS
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe-CCCCHHHHHHHHHHHHhccccceeeccccchHHHHHHHcCC
Confidence            47999999999888888999999999999999886655 5667775432    1  269999998776544333344556


Q ss_pred             ccc
Q 014264          282 PVI  284 (427)
Q Consensus       282 Pvl  284 (427)
                      |++
T Consensus        81 p~v   83 (255)
T d1byka_          81 SLV   83 (255)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            664
>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]} Back     information, alignment and structure
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} Back     information, alignment and structure