Citrus Sinensis ID: 014265
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | 2.2.26 [Sep-21-2011] | |||||||
| Q940M4 | 500 | Organic cation/carnitine | yes | no | 0.925 | 0.79 | 0.506 | 3e-97 | |
| Q2XWK0 | 548 | Synaptic vesicle 2-relate | N/A | no | 0.899 | 0.700 | 0.321 | 3e-46 | |
| Q5R5T8 | 548 | Synaptic vesicle 2-relate | yes | no | 0.906 | 0.706 | 0.305 | 1e-45 | |
| Q8N4V2 | 548 | Synaptic vesicle 2-relate | yes | no | 0.906 | 0.706 | 0.305 | 1e-45 | |
| Q1JP63 | 548 | Synaptic vesicle 2-relate | yes | no | 0.906 | 0.706 | 0.305 | 3e-45 | |
| P30638 | 520 | Putative transporter ZK63 | yes | no | 0.852 | 0.7 | 0.306 | 2e-44 | |
| Q9Z2I7 | 548 | Synaptic vesicle 2-relate | yes | no | 0.906 | 0.706 | 0.305 | 4e-42 | |
| Q8BFT9 | 548 | Synaptic vesicle 2-relate | yes | no | 0.906 | 0.706 | 0.307 | 5e-42 | |
| Q1LVS8 | 506 | Putative transporter SVOP | no | no | 0.805 | 0.679 | 0.323 | 2e-41 | |
| Q6PDF3 | 494 | Putative transporter SVOP | no | no | 0.800 | 0.692 | 0.329 | 7e-41 |
| >sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 355 bits (912), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 206/407 (50%), Positives = 271/407 (66%), Gaps = 12/407 (2%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GF+ A+VT AG LS+FSPNY+ LI LRCLVG+GLG G V SW+LEF+P +RG W
Sbjct: 90 RKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTW 149
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW++MPRL WRWLL SS+PS +LL F + ESPRYL L+G
Sbjct: 150 MVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQG 209
Query: 151 RTAEAHRALEKIAQVNKTKLPNG-KLVARRSTLPTGERAPPELVHLLSSNGGNKT----- 204
R AEA LEKIA++NKT+LP G + L + P E HLL + +
Sbjct: 210 RKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSK 269
Query: 205 ----TEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP 260
+ + G SL L L S L + T+LLW++ FGN+FAYY VVLL +EL++ RC
Sbjct: 270 IVLKADKEPGFSL-LALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPT 328
Query: 261 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY 320
+ D N Y D FI S AE PGLL++A +VD GRK S+ M C+FLLPL+++
Sbjct: 329 EKQLRNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSH 387
Query: 321 QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 380
QS +TT LLFG R+C+ AFTV IYA EIYPT+VR+TG G +++GRIGG++CPLVAV
Sbjct: 388 QSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAV 447
Query: 381 ALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTSD 427
LV CHQ AV+L VVI+ S + V L PFET G++L+D++ + +
Sbjct: 448 GLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISASKE 494
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High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 140/435 (32%), Positives = 212/435 (48%), Gaps = 51/435 (11%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V I M LW N+ R G + T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P +R +++ FW +G+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLILSALP-LMLFAILCFWLPESARYEVLSGNQEKALATLKRIATENGAPMPLGKLIVS 297
Query: 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSF 238
R + GK LFS + TT+LLW + F N+F
Sbjct: 298 R-----------------------QEDRGK-----IRDLFSPQFRCTTLLLWFIWFSNAF 329
Query: 239 AYYAVVLLISELSSLDTRCR-SPLMFSHHPQ--------DANLYIDEFITSLAEIPGLLL 289
+YY +VLL +EL C S + P+ Y D T+L+E PGLL+
Sbjct: 330 SYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLV 389
Query: 290 AAILVDTAGRKLSITI---MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLI 346
++D GRK ++ I +F+ S L L V N+LT LF AR + G F + +
Sbjct: 390 TLWIIDRVGRKKTMAICFIIFSFSALLLFLCVG--RNVLTV-FLFIARAFISGGFQAAYV 446
Query: 347 YAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 406
Y E+YPT+ R+ G G + M R+G ++ P +A ++ + +T +V ++ ++ S
Sbjct: 447 YTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSIYLTVLVYSGCCVLAAVASC 506
Query: 407 MLIPFETKGQELSDT 421
L P ETKG+ L ++
Sbjct: 507 FL-PIETKGRGLQES 520
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Xenopus laevis (taxid: 8355) |
| >sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 206/432 (47%), Gaps = 45/432 (10%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179
WLL LS++P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 239 WLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
Query: 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFA 239
+ GK LF+ TT+LLW + F N+F+
Sbjct: 299 -----------------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFS 330
Query: 240 YYAVVLLISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 290
YY +VLL +EL SS + + Y+D T+L+E PG+L+
Sbjct: 331 YYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVT 390
Query: 291 AILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 349
++D GRK ++ + F + S LL + N+LT LLF AR + G F + +Y
Sbjct: 391 LWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIARAFISGGFQAAYVYTP 449
Query: 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409
E+YPT+ R+ G G + M R+G ++ P +A ++ + +T V ++ ++ S L
Sbjct: 450 EVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL- 508
Query: 410 PFETKGQELSDT 421
P ETKG+ L ++
Sbjct: 509 PIETKGRGLQES 520
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Pongo abelii (taxid: 9601) |
| >sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 206/432 (47%), Gaps = 45/432 (10%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179
WLL LS++P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 239 WLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
Query: 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFA 239
+ GK LF+ TT+LLW + F N+F+
Sbjct: 299 -----------------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFS 330
Query: 240 YYAVVLLISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 290
YY +VLL +EL SS + + Y+D T+L+E PG+L+
Sbjct: 331 YYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVT 390
Query: 291 AILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 349
++D GRK ++ + F + S LL + N+LT LLF AR + G F + +Y
Sbjct: 391 LWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIARAFISGGFQAAYVYTP 449
Query: 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409
E+YPT+ R+ G G + M R+G ++ P +A ++ + +T V ++ ++ S L
Sbjct: 450 EVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL- 508
Query: 410 PFETKGQELSDT 421
P ETKG+ L ++
Sbjct: 509 PIETKGRGLQES 520
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Homo sapiens (taxid: 9606) |
| >sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 206/432 (47%), Gaps = 45/432 (10%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179
WLL LS++P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 239 WLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
Query: 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFA 239
+ GK LF+ TT+LLW + F N+F+
Sbjct: 299 -----------------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFS 330
Query: 240 YYAVVLLISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 290
YY +VLL +EL SS + + Y+D T+L+E PG+L+
Sbjct: 331 YYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVT 390
Query: 291 AILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 349
++D GRK ++ + F + S LL + N+LT LLF AR + G F + +Y
Sbjct: 391 LWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTL-LLFIARAFISGGFQAAYVYTP 449
Query: 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409
E+YPT+ R+ G G + M R+G ++ P +A ++ + +T V ++ ++ S L
Sbjct: 450 EVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL- 508
Query: 410 PFETKGQELSDT 421
P ETKG+ L ++
Sbjct: 509 PIETKGRGLQES 520
|
Bos taurus (taxid: 9913) |
| >sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 195/398 (48%), Gaps = 34/398 (8%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R G LV G++S SP++ L+ R L G G+G ++ + EF+P + R
Sbjct: 149 RKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTGFGIGGVPQSVTLYAEFLPTAQRAKC 208
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
+V+ SFW IG+V EA+ A+ +M WR L+ LSS+P I + PES R+ G
Sbjct: 209 VVLIESFWAIGAVFEALLAYFVMESFGWRALMFLSSLPLGIFAVASFWLPESARFDMASG 268
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 210
A L+ A++N+ +LP G+LV S+ G + ++ +LLS +
Sbjct: 269 HPERALETLQAAARMNRVQLPTGRLV---SSTKAGSESRGDIANLLSPD----------- 314
Query: 211 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH----- 265
L +TTILLW + +F+YY +VL + L C L FS+
Sbjct: 315 -----------LRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGL-FSNGTQME 362
Query: 266 --HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN 323
P + Y D T+LAE PGL++ ++++ GRK ++ + + + +F L
Sbjct: 363 VCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDR 422
Query: 324 ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383
T L+F AR + GAF + +Y E+YPT++R+ G G +AM RIG +V P +A
Sbjct: 423 FTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIAQVAS 482
Query: 384 ANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
+ + I+ I S+ L P ETKG+++ D+
Sbjct: 483 EKSLSLPIGIYGTAAILGLIASLSL-PIETKGRQMMDS 519
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 204/432 (47%), Gaps = 45/432 (10%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V I M LW N+ + G T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179
WLL LS+ P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 239 WLLLLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
Query: 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFA 239
+ GK LF+ TT+LLW + F N+F+
Sbjct: 299 -----------------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFS 330
Query: 240 YYAVVLLISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 290
YY +VLL +EL SS + + Y+D T+L+E PG+L+
Sbjct: 331 YYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVT 390
Query: 291 AILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 349
++D GRK ++ + F + S LL + N+LT LLF AR + G F + +Y
Sbjct: 391 LWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTL-LLFIARAFISGGFQAAYVYTP 449
Query: 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409
E+YPT+ R+ G G + M R+G ++ P +A ++ + +T V ++ ++ S L
Sbjct: 450 EVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL- 508
Query: 410 PFETKGQELSDT 421
P ETKG+ L ++
Sbjct: 509 PIETKGRALQES 520
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 204/432 (47%), Gaps = 45/432 (10%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V I M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179
WLL LS+ P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 239 WLLLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
Query: 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFA 239
+ GK LF+ TT+LLW + F N+F+
Sbjct: 299 -----------------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFS 330
Query: 240 YYAVVLLISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 290
YY +VLL +EL SS + + Y+D T+L+E PG+L+
Sbjct: 331 YYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVT 390
Query: 291 AILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 349
++D GRK ++ + F + S LL + N+LT LLF AR + G F + +Y
Sbjct: 391 LWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTL-LLFIARAFISGGFQAAYVYTP 449
Query: 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409
E+YPT+ R+ G G + M R+G ++ P +A ++ + +T V ++ + S L
Sbjct: 450 EVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAGVASCFL- 508
Query: 410 PFETKGQELSDT 421
P ETKG+ L ++
Sbjct: 509 PIETKGRALQES 520
|
Mus musculus (taxid: 10090) |
| >sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 181/386 (46%), Gaps = 42/386 (10%)
Query: 46 LLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105
L+SFS +Y I LRC+VG G+ + EF+P R + + S FW +GS+
Sbjct: 146 FLTSFSTSYGWFIFLRCMVGCGVAATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSILI 205
Query: 106 AIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQV 165
+ ++P + WRW++ S IPS +L+ F PES R+ G A L++IA++
Sbjct: 206 IVLGMTVVPTMGWRWMIRFSVIPSLVLIGLFMFIPESARFQVSAGNIQGAMSTLKRIAKM 265
Query: 166 NKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLART 225
N NG LP GE PE+ + GN T L SS RT
Sbjct: 266 N-----NG-------VLPEGELREPEV-----TERGNAVT-----------LISSAFRRT 297
Query: 226 TILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHH-------------PQDANL 272
++LLW F SF+YY VL SEL + C + H P +++
Sbjct: 298 SLLLWYSWFVASFSYYGSVLSSSELLEKNLLCVTDPDLEHQIKHIQEETLCYCIPFNSDD 357
Query: 273 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFG 332
Y I+ L E+ + L IL++ GRK S+ I+ LS F + + + + T LLF
Sbjct: 358 YQTLLISCLGEVALIPLNIILLNIVGRKYSMVILLLLSAFFFMLVNICTTMLGFTILLFL 417
Query: 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAV 392
R V F V IY AE+YPTSVRS G G + RIGGM+ P +A L++ +
Sbjct: 418 LRSVVSMNFNVVYIYTAEVYPTSVRSIGMGFCTSFSRIGGMIAPFIAQVLMSKSVILALS 477
Query: 393 VLLVVVIVTSILSVMLIPFETKGQEL 418
I+ +I V +P ET+G+ L
Sbjct: 478 PFATACIICAI-GVFFLPIETRGRAL 502
|
Danio rerio (taxid: 7955) |
| >sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 131/397 (32%), Positives = 189/397 (47%), Gaps = 55/397 (13%)
Query: 46 LLSSFSPNYITLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104
LL+SFSP+YI + LR +VG G+ SGH L EF+P RG + + FW GS+
Sbjct: 129 LLTSFSPSYIWFVFLRTMVGCGV-SGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLL 187
Query: 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQ 164
A +++P + WRWL+ ++SIP IL+ F PES R+ G T A LE IA+
Sbjct: 188 IISMASVVIPTIGWRWLIRIASIPGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAK 247
Query: 165 VNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLAR 224
+N++ +P G+LV P E+ G+ F L SK R
Sbjct: 248 MNRSVMPEGQLVE-----PILEK------------------RGR-----FADLLDSKYLR 279
Query: 225 TTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL-------------------MFSH 265
TT+ +W++ G SFAYY V+L +EL D C S + H
Sbjct: 280 TTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPEVVETTGDSGEGLSPCYCH 339
Query: 266 --HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN 323
P D Y I++L EI L + ++ GR+LS++I + LF L L S+
Sbjct: 340 IFAPSD---YRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSS 396
Query: 324 ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383
G LF R V F IY AE+YPT +R+ G G + ++ RIG MV P ++ L+
Sbjct: 397 AGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTSGSLCRIGAMVAPFISQVLM 456
Query: 384 ANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 420
+ + A+ L V V +S +P ETKG+ L
Sbjct: 457 SASF-LGALCLFSSVCVVCAISAFTLPIETKGRALQQ 492
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | ||||||
| 383932368 | 482 | MFS [Gossypium hirsutum] | 0.915 | 0.811 | 0.616 | 1e-126 | |
| 255574249 | 497 | sugar transporter, putative [Ricinus com | 0.913 | 0.784 | 0.589 | 1e-122 | |
| 224118680 | 492 | predicted protein [Populus trichocarpa] | 0.915 | 0.794 | 0.612 | 1e-121 | |
| 255573803 | 498 | sugar transporter, putative [Ricinus com | 0.915 | 0.785 | 0.568 | 1e-116 | |
| 224118546 | 493 | predicted protein [Populus trichocarpa] | 0.915 | 0.793 | 0.541 | 1e-115 | |
| 218195538 | 529 | hypothetical protein OsI_17329 [Oryza sa | 0.911 | 0.735 | 0.530 | 1e-111 | |
| 222629519 | 424 | hypothetical protein OsJ_16102 [Oryza sa | 0.911 | 0.917 | 0.530 | 1e-111 | |
| 90265074 | 489 | H0702G05.6 [Oryza sativa Indica Group] | 0.911 | 0.795 | 0.530 | 1e-111 | |
| 38567900 | 588 | OSJNBa0060N03.20 [Oryza sativa Japonica | 0.911 | 0.661 | 0.530 | 1e-111 | |
| 242039569 | 491 | hypothetical protein SORBIDRAFT_01g02099 | 0.896 | 0.780 | 0.514 | 1e-109 |
| >gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/391 (61%), Positives = 293/391 (74%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFL ++VT GAGLLS+FSPNY+TL LR LVG GLG VFLSWFLEF+P SNRGMW
Sbjct: 91 RKGFLTISMVTFGAGLLSTFSPNYLTLALLRGLVGFGLGGSSVFLSWFLEFIPASNRGMW 150
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT GS+ EA AWI+MPRL+WRW+L S++PSF LL G PESPRYLC+KG
Sbjct: 151 MVVFSTFWTFGSIFEATLAWIVMPRLNWRWVLAFSAVPSFALLILYGVAPESPRYLCMKG 210
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 210
T++A R LEKIA VN+TKLP G LV+ RS E AP E L + TT+ KSG
Sbjct: 211 NTSDALRILEKIASVNQTKLPPGVLVSGRSNDKDEESAPSENTAPLLPSLSKSTTQSKSG 270
Query: 211 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 270
S F MLFSSKL RTT+LLW+L FG+SF+YY ++LL S+LSS + C L + +PQD
Sbjct: 271 FSSFFMLFSSKLIRTTLLLWVLFFGDSFSYYGIILLTSKLSSGQSTCFPSLQSNINPQDD 330
Query: 271 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLL 330
LY++ FITS+AE+PGLLL+AILVD GRK S+ IMF L+ +FL PL+ Q +LTT LL
Sbjct: 331 GLYLNAFITSMAELPGLLLSAILVDRVGRKHSMAIMFGLAFIFLTPLLIQQPAVLTTCLL 390
Query: 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT 390
FGARM MG FTV+ IY+ E+YPTSVR+TGAG A+A+GRIGGMVCPLVAV LV CHQ
Sbjct: 391 FGARMNAMGTFTVASIYSPELYPTSVRTTGAGVASAIGRIGGMVCPLVAVGLVNECHQTA 450
Query: 391 AVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
AV L +V IV SI+ + L P++TKG+ELSDT
Sbjct: 451 AVALFLVAIVVSIVCIQLFPYDTKGRELSDT 481
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/390 (58%), Positives = 295/390 (75%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R L ++T+GAG +S+FSPNY+TL+ LRCLVG GLG HVFLSWFLEF+P S+RG W
Sbjct: 94 RKCVLSITVITSGAGFISAFSPNYLTLVVLRCLVGFGLGGTHVFLSWFLEFIPTSHRGKW 153
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MVIFS+FWT+G + EA AWI+M RL+WRWLL LS++PSF LL F G PESPRYLCLKG
Sbjct: 154 MVIFSTFWTLGIIFEASLAWIVMLRLNWRWLLALSTVPSFSLLLFYGLVPESPRYLCLKG 213
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 210
RTA+AH+ LEKIA VN+ +LP G LV+ E + E L K + KSG
Sbjct: 214 RTAQAHQVLEKIALVNQKELPPGMLVSYGKIKEDEEISALEQKRSLLFMDREKISTLKSG 273
Query: 211 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 270
S F +LFSS L +TT+LLW+L FGN F+YY ++LL S+LSS +++C ++ S +PQD
Sbjct: 274 FSSFSLLFSSNLIQTTLLLWVLFFGNVFSYYGIILLTSQLSSSESKCSLTILHSQNPQDE 333
Query: 271 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLL 330
+L++D ITS AE+PG+LL+A++VD GRKLS+ IMF + +FLLPLV+ QS+ILTTGLL
Sbjct: 334 SLFMDVLITSFAELPGILLSAMMVDRFGRKLSMAIMFIFAWIFLLPLVSRQSDILTTGLL 393
Query: 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT 390
FGARM +G FTV+ IYA E+YPTS+RSTGAG A+A+GRIGGMVCPLVAVALV+NCH
Sbjct: 394 FGARMFSLGTFTVASIYAPELYPTSIRSTGAGTASAVGRIGGMVCPLVAVALVSNCHFKA 453
Query: 391 AVVLLVVVIVTSILSVMLIPFETKGQELSD 420
A++L VVI +++ ++L PFET G+ELSD
Sbjct: 454 AIILFEVVIAITVVCILLFPFETSGRELSD 483
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/392 (61%), Positives = 300/392 (76%), Gaps = 1/392 (0%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFLG ++T+ AG LS+FSPNY++L+ LRCLVGVGLG G VF SWFLEFVP S+RG W
Sbjct: 91 RQGFLGITIITSAAGFLSTFSPNYVSLLILRCLVGVGLGGGPVFSSWFLEFVPASHRGTW 150
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT G++ EA AWI++PRL+WRWLL SS+PS L F PESPRYL +KG
Sbjct: 151 MVVFSTFWTFGTIFEAALAWIVLPRLNWRWLLAFSSLPSIAQLFFYWIVPESPRYLSMKG 210
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 210
R EAH LEKIAQ+N++KLP G LV+ + E AP + LLSS N ++ KSG
Sbjct: 211 RITEAHNILEKIAQLNQSKLPPGMLVSDSTIGLDEESAPSKYTPLLSSTR-NLVSDFKSG 269
Query: 211 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 270
S F+MLFSSKL RTT+LLWLL FGN+F+YY ++LL SELSS + +C S ++ S + QD
Sbjct: 270 FSSFVMLFSSKLIRTTLLLWLLFFGNAFSYYGIILLTSELSSEEGKCASTVLRSENLQDD 329
Query: 271 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLL 330
+LYI+ FITSLAE+PG+LL+AI+VD GRKLS+ MF L+C+FLLPLV +Q LTT LL
Sbjct: 330 SLYINVFITSLAELPGILLSAIIVDRFGRKLSMAFMFVLACIFLLPLVFHQHATLTTALL 389
Query: 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT 390
FGARMC +G FTV+ IYA E+YPT +R+TGAG ANA+GRIGGMVCPLVAV LVA CH
Sbjct: 390 FGARMCAIGTFTVAAIYAPEVYPTVIRATGAGVANAVGRIGGMVCPLVAVGLVAGCHLKE 449
Query: 391 AVVLLVVVIVTSILSVMLIPFETKGQELSDTV 422
A++L VVIV S++ V+L PFET G+ELSD++
Sbjct: 450 AIILFEVVIVISVVCVLLFPFETSGRELSDSL 481
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/392 (56%), Positives = 277/392 (70%), Gaps = 1/392 (0%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R G LG L+T GAG LS+F PNYI+LITLRCLVG+GLG G VF SWFLEFVP S+RG W
Sbjct: 96 RKGILGSTLLTCGAGSLSTFCPNYISLITLRCLVGIGLGGGPVFSSWFLEFVPASHRGTW 155
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV++S+ WT G++ EA AWI+MPRL WRWLL SS+PS +LL F PESPRYLC KG
Sbjct: 156 MVVYSTSWTFGTIFEATLAWIVMPRLSWRWLLAFSSLPSIVLLLFYRLAPESPRYLCTKG 215
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 210
R +AHR LEKIA +N+ KLP G LV+ +T E + LLS + + KS
Sbjct: 216 RFTDAHRILEKIALLNQAKLPGGILVSDSTTGLDEESSSLSHQPLLSL-ARKRVSSFKSA 274
Query: 211 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 270
S F MLFSS+L +TT+LLW+L FGNSF YY ++LL SELS CRS + QD
Sbjct: 275 FSSFFMLFSSRLIKTTLLLWVLYFGNSFLYYGIILLTSELSGRQDECRSATSSLENHQDE 334
Query: 271 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLL 330
NLYID FITSLAE+PG++L+AI VD GRK S+ MF +C+FLLPLV++QS +L T L
Sbjct: 335 NLYIDIFITSLAELPGIILSAITVDRFGRKRSMIFMFVAACIFLLPLVSHQSAVLRTSFL 394
Query: 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT 390
FGARMC +G FT++ IY E+YPT VR+TG+G A+A GRIGGM+CPLVAV LV CH
Sbjct: 395 FGARMCAIGTFTIACIYCPELYPTPVRTTGSGVASAAGRIGGMICPLVAVGLVTGCHVEA 454
Query: 391 AVVLLVVVIVTSILSVMLIPFETKGQELSDTV 422
+++ VV S + ++ P+ETKG ELSD+V
Sbjct: 455 GIIVFEVVAAISAICLLFFPYETKGCELSDSV 486
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/408 (54%), Positives = 290/408 (71%), Gaps = 17/408 (4%)
Query: 20 FRLPHLWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFL 79
F LP+++Q+ GLLS+FSPNY +L+ +RCLVG+GLG V SWFL
Sbjct: 95 FSLPYIFQS----------------GLLSAFSPNYESLVIIRCLVGLGLGGSTVLCSWFL 138
Query: 80 EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ 139
EFVP +RG WMV+FS+FWT+G++ EA AW++M RL WRWLL SS+PS LL F G
Sbjct: 139 EFVPAPHRGKWMVVFSTFWTLGAIFEASLAWLVMQRLSWRWLLAFSSLPSIALLLFYGIV 198
Query: 140 PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN 199
PESPRYLC+KGR +AH+ L+KIA +N+++LP G LV + + AP + LLSS
Sbjct: 199 PESPRYLCMKGRINDAHKILQKIALLNQSELPPGMLVPDSTVGQEEKSAPSKYTPLLSST 258
Query: 200 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259
+ KS S F MLFSS L +TT+LLW+LLFGN F+YY ++LL SELSS +C S
Sbjct: 259 R-KVIVDFKSVFSSFFMLFSSTLIQTTLLLWVLLFGNVFSYYGIILLTSELSSQQGKCGS 317
Query: 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT 319
++ S + Q+ +LYI+ F+TSLAE+PGLLL+AI+VD GRKLS+ +M L C+FL PL+
Sbjct: 318 TILSSENLQNDSLYINVFVTSLAELPGLLLSAIIVDRLGRKLSMALMLVLGCIFLFPLLF 377
Query: 320 YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA 379
S LTT +LFGARMCVMG+FT++ +YA E+YPT+VR+TGAG A+++GRIGGM+CPLVA
Sbjct: 378 NVSANLTTAMLFGARMCVMGSFTIATLYAPELYPTAVRATGAGVASSVGRIGGMICPLVA 437
Query: 380 VALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTSD 427
V LV C+ A++L VV+ S S +L PFETKGQELSD+VD SD
Sbjct: 438 VGLVTGCYLTEAIILFEVVMAISAFSSLLFPFETKGQELSDSVDHVSD 485
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218195538|gb|EEC77965.1| hypothetical protein OsI_17329 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/396 (53%), Positives = 280/396 (70%), Gaps = 7/396 (1%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFL A+VT+GAG LS+F+PNY++LI+LR LVG+GLG G V SWFLEFVP RG W
Sbjct: 131 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 190
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW +MP+ WRWLL LS++PSF+LL F PESPR+LC+KG
Sbjct: 191 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 250
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT-EGK- 208
R EA LEK+A++N +LP+G+LV+ ++ + E + E LL+ + T E K
Sbjct: 251 RVTEAMDVLEKMARLNNVQLPSGRLVSDKN-IELDELSTSESTTLLADAEEDDTIIEDKV 309
Query: 209 ---SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH 265
GLS+ L S KL R T+LLW+ FGN+F+YY +VLL SELS+ + C + S
Sbjct: 310 SSFGGLSV-AKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESI 368
Query: 266 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL 325
H DA+LY + FI+S AEIPG L+A++VD GRKLS+ M SC+FL PL+ +++IL
Sbjct: 369 HSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDIL 428
Query: 326 TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385
T LFGAR+C+ +FT+ IYA EIYPTSVR+TG G A+++GRIGG++CPLVAVALV +
Sbjct: 429 TRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHS 488
Query: 386 CHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
C Q TA++L +VI S L+V PFETKG L+DT
Sbjct: 489 CQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 524
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222629519|gb|EEE61651.1| hypothetical protein OsJ_16102 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/396 (53%), Positives = 280/396 (70%), Gaps = 7/396 (1%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFL A+VT+GAG LS+F+PNY++LI+LR LVG+GLG G V SWFLEFVP RG W
Sbjct: 26 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 85
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW +MP+ WRWLL LS++PSF+LL F PESPR+LC+KG
Sbjct: 86 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 145
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT-EGK- 208
R EA LEK+A++N +LP+G+LV+ ++ + E + E LL+ + T E K
Sbjct: 146 RVTEAMDVLEKMARLNNVQLPSGRLVSDKN-IELDELSTSESTTLLADAEEDDTIIEDKV 204
Query: 209 ---SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH 265
GLS+ L S KL R T+LLW+ FGN+F+YY +VLL SELS+ + C + S
Sbjct: 205 SSFGGLSV-AKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESI 263
Query: 266 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL 325
H DA+LY + FI+S AEIPG L+A++VD GRKLS+ M SC+FL PL+ +++IL
Sbjct: 264 HSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDIL 323
Query: 326 TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385
T LFGAR+C+ +FT+ IYA EIYPTSVR+TG G A+++GRIGG++CPLVAVALV +
Sbjct: 324 TRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHS 383
Query: 386 CHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
C Q TA++L +VI S L+V PFETKG L+DT
Sbjct: 384 CQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 419
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/396 (53%), Positives = 280/396 (70%), Gaps = 7/396 (1%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFL A+VT+GAG LS+F+PNY++LI+LR LVG+GLG G V SWFLEFVP RG W
Sbjct: 91 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 150
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW +MP+ WRWLL LS++PSF+LL F PESPR+LC+KG
Sbjct: 151 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 210
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT-EGK- 208
R EA LEK+A++N +LP+G+LV+ ++ + E + E LL+ + T E K
Sbjct: 211 RVTEAMDVLEKMARLNNVQLPSGRLVSDKN-IELDELSTSESTTLLADAEEDDTIIEDKV 269
Query: 209 ---SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH 265
GLS+ L S KL R T+LLW+ FGN+F+YY +VLL SELS+ + C + S
Sbjct: 270 SSFGGLSV-AKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESI 328
Query: 266 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL 325
H DA+LY + FI+S AEIPG L+A++VD GRKLS+ M SC+FL PL+ +++IL
Sbjct: 329 HSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDIL 388
Query: 326 TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385
T LFGAR+C+ +FT+ IYA EIYPTSVR+TG G A+++GRIGG++CPLVAVALV +
Sbjct: 389 TRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHS 448
Query: 386 CHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
C Q TA++L +VI S L+V PFETKG L+DT
Sbjct: 449 CQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 484
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38567900|emb|CAE03655.2| OSJNBa0060N03.20 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/396 (53%), Positives = 280/396 (70%), Gaps = 7/396 (1%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFL A+VT+GAG LS+F+PNY++LI+LR LVG+GLG G V SWFLEFVP RG W
Sbjct: 190 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 249
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW +MP+ WRWLL LS++PSF+LL F PESPR+LC+KG
Sbjct: 250 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 309
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT-EGK- 208
R EA LEK+A++N +LP+G+LV+ ++ + E + E LL+ + T E K
Sbjct: 310 RVTEAMDVLEKMARLNNVQLPSGRLVSDKN-IELDELSTSESTTLLADAEEDDTIIEDKV 368
Query: 209 ---SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH 265
GLS+ L S KL R T+LLW+ FGN+F+YY +VLL SELS+ + C + S
Sbjct: 369 SSFGGLSV-AKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESI 427
Query: 266 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL 325
H DA+LY + FI+S AEIPG L+A++VD GRKLS+ M SC+FL PL+ +++IL
Sbjct: 428 HSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDIL 487
Query: 326 TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385
T LFGAR+C+ +FT+ IYA EIYPTSVR+TG G A+++GRIGG++CPLVAVALV +
Sbjct: 488 TRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHS 547
Query: 386 CHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
C Q TA++L +VI S L+V PFETKG L+DT
Sbjct: 548 CQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 583
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242039569|ref|XP_002467179.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] gi|241921033|gb|EER94177.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/404 (51%), Positives = 278/404 (68%), Gaps = 21/404 (5%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFL A+VT+GAG LS+F+PNY++LI+LR LVG+GLG G V SWFLEFVP RG W
Sbjct: 91 RRGFLFTAIVTSGAGFLSAFAPNYLSLISLRFLVGIGLGGGPVLGSWFLEFVPAPTRGTW 150
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW +MP+ WRWLL LS+IPSF+LL F PESPR+LC+KG
Sbjct: 151 MVVFSAFWTVGTILEASLAWTVMPKFGWRWLLALSAIPSFLLLLFYAITPESPRFLCMKG 210
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARR-------------STLPTGERAPPELVHLLS 197
RT EA LEK+A++N +LP+G+LV+ + +TL +G L
Sbjct: 211 RTTEAVDVLEKMARLNNVQLPSGRLVSDKNIELDEVSGSSESTTLLSGAEESDNLSEDRG 270
Query: 198 SNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRC 257
S+ G + GK L + KL R T+LLW+ FGN+FAYY +VLL SELS+ + C
Sbjct: 271 SDFGGIKSVGK--------LLAPKLIRATLLLWMAFFGNAFAYYGIVLLTSELSNGNRIC 322
Query: 258 RSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL 317
+ S + +A+LY + FI+S AEIPG L+A++VD GRKLS+ M SC+FL+PL
Sbjct: 323 AKQDVESVNSTNASLYKNVFISSFAEIPGSFLSAMIVDRFGRKLSMASMLFTSCVFLVPL 382
Query: 318 VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPL 377
V +++ILT LFGAR+C+ +FT+ IYA EIYPT+VR+TG G A+++GRIGG++CPL
Sbjct: 383 VFSRTDILTRISLFGARLCISASFTIVYIYAPEIYPTAVRTTGIGIASSVGRIGGILCPL 442
Query: 378 VAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
VAVALV +C Q TA++L +VI S L+V PFETKG L+DT
Sbjct: 443 VAVALVHSCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 486
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | ||||||
| TAIR|locus:2089270 | 500 | NiaP "nicotinate transporter" | 0.927 | 0.792 | 0.470 | 8.1e-92 | |
| ZFIN|ZDB-GENE-070705-359 | 411 | svopb "SV2 related protein hom | 0.320 | 0.333 | 0.386 | 1e-43 | |
| ZFIN|ZDB-GENE-060526-336 | 549 | svopa "SV2 related protein hom | 0.407 | 0.316 | 0.381 | 2.3e-43 | |
| UNIPROTKB|F6XK47 | 483 | SVOP "Uncharacterized protein" | 0.407 | 0.360 | 0.370 | 9.6e-41 | |
| UNIPROTKB|E2QZ16 | 548 | SVOP "Uncharacterized protein" | 0.407 | 0.317 | 0.370 | 2.2e-40 | |
| UNIPROTKB|Q8N4V2 | 548 | SVOP "Synaptic vesicle 2-relat | 0.407 | 0.317 | 0.364 | 3.2e-40 | |
| UNIPROTKB|F1RGB1 | 548 | SVOP "Uncharacterized protein" | 0.407 | 0.317 | 0.370 | 3.5e-40 | |
| UNIPROTKB|G3MZU5 | 547 | SVOP "Synaptic vesicle 2-relat | 0.407 | 0.318 | 0.364 | 4.1e-40 | |
| UNIPROTKB|Q1JP63 | 548 | SVOP "Synaptic vesicle 2-relat | 0.407 | 0.317 | 0.364 | 4.1e-40 | |
| MGI|MGI:1915916 | 548 | Svop "SV2 related protein" [Mu | 0.407 | 0.317 | 0.370 | 1.2e-39 |
| TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 191/406 (47%), Positives = 248/406 (61%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GF+ A+VT AG LS+FSPNY+ LI LRCLVG+GLG G V SW+LEF+P +RG W
Sbjct: 90 RKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTW 149
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW++MPRL WRWLL SS+PS +LL F + ESPRYL L+G
Sbjct: 150 MVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQG 209
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRST-LPTGERAPPELVHLLSSN-GGNKTTEXX 208
R AEA LEKIA++NKT+LP G L + T L + P E HLL + G
Sbjct: 210 RKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSK 269
Query: 209 XXXXXXXXXXXXXXA-------RTTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPL 261
A + T+ FGN+FAYY VVLL +EL++ RC
Sbjct: 270 IVLKADKEPGFSLLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTE 329
Query: 262 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ 321
+ D N Y D FI S AE PGLL++A +VD GRK S+ M C+FLLPL+++Q
Sbjct: 330 KQLRNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQ 388
Query: 322 SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVA 381
S +TT LLFG R+C+ AFTV IYA EIYPT+VR+TG G +++GRIGG++CPLVAV
Sbjct: 389 SPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVG 448
Query: 382 LVANCHQXXXXXXXXXXXXXXXXXXXXIPFETKGQELSDTVDFTSD 427
LV CHQ PFET G++L+D++ + +
Sbjct: 449 LVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISASKE 494
|
|
| ZFIN|ZDB-GENE-070705-359 svopb "SV2 related protein homolog b (rat)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 1.0e-43, Sum P(2) = 1.0e-43
Identities = 53/137 (38%), Positives = 86/137 (62%)
Query: 45 GLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104
GLLS+F+P Y ++ L+ LVG GLG ++ + EF+P +RG +V+ + FW +G+V
Sbjct: 49 GLLSAFAPVYGWMLVLQGLVGFGLGGAPQSVTLYTEFLPVKSRGPAIVLLAVFWAVGAVF 108
Query: 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQ 164
E + A ++MP L W+WLL +++P + A + PES R+ L+GR+ +A L +IA
Sbjct: 109 EVVLAILVMPTLGWKWLLAFTNLPLLVFAASCCWLPESARFDVLRGRSDKALNTLIRIAA 168
Query: 165 VNKTKLPNGKLVARRST 181
NK+ +P G+L+A T
Sbjct: 169 DNKSSVPAGRLIANTQT 185
|
|
| ZFIN|ZDB-GENE-060526-336 svopa "SV2 related protein homolog a (rat)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
Identities = 69/181 (38%), Positives = 97/181 (53%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V I M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWEVALLTSVVFIGMMISSSLWGNISDKYGRKTGLKMSVLWTLFYGILSAFAPIYGWILF 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P +R +++ FW +G+V E + A ++MP L WR
Sbjct: 179 LRALVGFGIGGAPQSVTLYAEFLPMRSRATCILLIEIFWALGTVFEVLLAILVMPTLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS+IP FI AFL F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLALSTIPLFIF-AFLCFWLPESARYDVLTGNQEKALNTLKRIAAENNVPMPLGKLIVA 297
Query: 179 R 179
R
Sbjct: 298 R 298
|
|
| UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 9.6e-41, Sum P(2) = 9.6e-41
Identities = 67/181 (37%), Positives = 94/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 54 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 113
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E I A +MP L WR
Sbjct: 114 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWR 173
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 174 WLLILSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 232
Query: 179 R 179
R
Sbjct: 233 R 233
|
|
| UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 67/181 (37%), Positives = 94/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E I A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLILSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 297
Query: 179 R 179
R
Sbjct: 298 R 298
|
|
| UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 3.2e-40, Sum P(2) = 3.2e-40
Identities = 66/181 (36%), Positives = 94/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLILSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 297
Query: 179 R 179
R
Sbjct: 298 R 298
|
|
| UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 67/181 (37%), Positives = 94/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E I A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLLLSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 297
Query: 179 R 179
R
Sbjct: 298 R 298
|
|
| UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 4.1e-40, Sum P(2) = 4.1e-40
Identities = 66/181 (36%), Positives = 94/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 118 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 177
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 178 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWR 237
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 238 WLLILSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 296
Query: 179 R 179
R
Sbjct: 297 R 297
|
|
| UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 4.1e-40, Sum P(2) = 4.1e-40
Identities = 66/181 (36%), Positives = 94/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLILSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 297
Query: 179 R 179
R
Sbjct: 298 R 298
|
|
| MGI|MGI:1915916 Svop "SV2 related protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 67/181 (37%), Positives = 93/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V I M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS+ P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLLLSAAP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 297
Query: 179 R 179
R
Sbjct: 298 R 298
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q940M4 | OCT7_ARATH | No assigned EC number | 0.5061 | 0.9250 | 0.79 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pm.C_scaffold_164000007 | hypothetical protein (492 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 427 | |||
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-63 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-22 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-22 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-16 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 6e-16 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 9e-14 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 3e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 9e-10 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 3e-07 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 5e-07 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-06 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-04 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 2e-63
Identities = 116/386 (30%), Positives = 181/386 (46%), Gaps = 48/386 (12%)
Query: 39 LVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSF 97
LVTA +G+L++FSPNY + R LVG+G+G V + EF+P R + + F
Sbjct: 165 LVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVF 224
Query: 98 WTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHR 157
+++G V + A+ I DWRWL S+P+F+ F PESPR+L +GR EA +
Sbjct: 225 FSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALK 281
Query: 158 ALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLML 217
L++IA++N KLP L L + K S +
Sbjct: 282 ILQRIAKINGKKLPAEVLS------------LSLEKDL---------SSSKKQYSFLDLF 320
Query: 218 FSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEF 277
+ L +TT+ L +L F +F+YY +VL + L N+Y+D F
Sbjct: 321 RTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNL------------------GGNIYLDLF 362
Query: 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTL--SCLFLLPLVTYQSNILTTGLLFGARM 335
I+ L E+P L+ +L+D GR+ ++ L L LL V L T L +
Sbjct: 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKF 422
Query: 336 CVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLL 395
+ AF + +Y AE+YPT VR+ G G + M R+G ++ P + + V+
Sbjct: 423 GITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKW-LFLPLVLFG 481
Query: 396 VVVIVTSILSVMLIPFETKGQELSDT 421
+ ++ IL++ L ETKG L +T
Sbjct: 482 GLALLAGILTLFLP--ETKGVPLPET 505
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 1e-22
Identities = 83/413 (20%), Positives = 146/413 (35%), Gaps = 71/413 (17%)
Query: 31 RMGFLGEALVTAGAGLLSSFSP--NYITLITLRCLVGVGLGSGHVFLSWFL-EFVPPSNR 87
+ L ++ LL F+ ++ LI R +VG+G+G V + ++ E P R
Sbjct: 76 KKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLR 135
Query: 88 GMWMVIFSSFWTIGSVSEAIGAWI------IMPRLDWRWLLGLSSIPSFILLAFLGFQPE 141
G ++ T G + + A I WR LGL +P+ +LL L F PE
Sbjct: 136 GALGSLYQLGITFGIL---VAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPE 192
Query: 142 SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG 201
SPR+L LKG+ EA L K+ V+ E+ S
Sbjct: 193 SPRWLVLKGKLEEARAVLAKLRGVSDVD--------------------QEIQEEKDSLER 232
Query: 202 NKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFG---NSFAYYAVVLLISELSSLDTRCR 258
+ E S L LF + ++L + N+ YY+ +
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIF------------ 280
Query: 259 SPLMFSHHPQDANLYIDEFITSLAE----IPGLLLAAILVDTAGRK-LSITIMFTLSCLF 313
+ D + ++ +A LVD GR+ L + ++ F
Sbjct: 281 ----------ETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICF 330
Query: 314 LLPLVTY--QSNILTTGLLFGARMCVMGAF------TVSLIYAAEIYPTSVRSTGAGAAN 365
L+ V + G++ + + AF V + +E++P VR A
Sbjct: 331 LVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIAT 390
Query: 366 AMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 418
A + + + + +V ++++ + +P ETKG+ L
Sbjct: 391 AANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVP-ETKGRTL 442
|
Length = 449 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 2e-22
Identities = 85/351 (24%), Positives = 140/351 (39%), Gaps = 48/351 (13%)
Query: 39 LVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFL-EFVPPSNRGMWMVIFSSF 97
L+ + LL + + N L+ LR L G+GLG L+ + E+ P RG + +
Sbjct: 90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCG 149
Query: 98 WTIG-SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEA 155
+ IG +V + W+I P WR L + I +LL L F PES +L K R
Sbjct: 150 YPIGAAVGGFLAGWLI-PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETV 207
Query: 156 HRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFL 215
R + IA P + + + G K S+F
Sbjct: 208 RRIVNAIA-------------------PQMQAEAQSALPEQKATQGTKR-------SVFK 241
Query: 216 MLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYID 275
LF K AR T+LLWLL F Y + + +L +
Sbjct: 242 ALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGF-----------SLSLAATG 290
Query: 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN---ILTTGLLFG 332
+ + + G ++ L D G ++ ++ L +F + + + + +L G + G
Sbjct: 291 GALFNFGGVIGSIIFGWLADRLGPRV-TALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG 349
Query: 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383
V G + A YPT++R+TG G A +GR+G ++ P++A L+
Sbjct: 350 --FFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-16
Identities = 88/411 (21%), Positives = 150/411 (36%), Gaps = 52/411 (12%)
Query: 31 RMGFLGEALVTAGAG-LLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFL-EFVPPSNRG 88
+ + V L++F+ + LI R L+G+G+G + +L E P + RG
Sbjct: 103 SLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRG 162
Query: 89 MWMVIFSSFWTIGSVSEAI---GAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRY 145
++ T G + G + L WR LGL IP+ +L L F PESPR+
Sbjct: 163 ALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRW 222
Query: 146 LCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT 205
L KGR EA ++L ++ T + +L+ + V
Sbjct: 223 LVGKGRVEEARKSLARL---RGTSGEDKELLDELELIDIKRSIEKRSV------------ 267
Query: 206 EGKSGLSLFLMLFSSKLARTTILL--WLLLF--GNSFAYYAVVLLISELSSLDTRCRSPL 261
S SLF + ++ W F N+ YY+ + + S D
Sbjct: 268 -QPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH----AF 322
Query: 262 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK--LSITIMFTLSCLFLLPLVT 319
+ S I +A LVD GR+ L I CLF+L ++
Sbjct: 323 LVS------------IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILG 370
Query: 320 YQS---NILTTGLLFGARMCVMGAF------TVSLIYAAEIYPTSVRSTGAGAANAMGRI 370
+ ++G + + + AF V + +EI+P S+R G A A +
Sbjct: 371 ASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWL 430
Query: 371 GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
+ + ++ + + + V ++ V ETKG+ L +
Sbjct: 431 ANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 6e-16
Identities = 62/239 (25%), Positives = 95/239 (39%), Gaps = 26/239 (10%)
Query: 46 LLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104
SSF Y + R L G G+G + S+F EF+ RG + FW IG +
Sbjct: 247 FFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY 306
Query: 105 EAIGAWIIMPRLDWRWLLG-------------LSSIPSFILLAFLGFQPESPRYLCLKGR 151
A AW I+P W + +G + + P + L F PESPR+ G+
Sbjct: 307 AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGK 366
Query: 152 TAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG-------NKT 204
EA L+ I N + + V + + T + EL+ + S G
Sbjct: 367 HDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQE-DELIEIESDTGTWYQRCFVRAL 425
Query: 205 TEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVL----LISELSSLDTRCRS 259
+EG FL F+ ++ TI L + F SF YY + + +I L + D +
Sbjct: 426 SEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALT 484
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 9e-14
Identities = 72/361 (19%), Positives = 131/361 (36%), Gaps = 62/361 (17%)
Query: 44 AGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWF-LEFVPPSNRGMWMVIFSSFWTIGS 102
L F+P YIT+ R ++G+G+G + + + +E P R + S + +G+
Sbjct: 90 GTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGA 149
Query: 103 VSEAIGAWIIMPRLD--WRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALE 160
V A +++P WR L +S +P L PE+ + E H
Sbjct: 150 VVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDW-------KEKHAGKA 202
Query: 161 KIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS 220
+ + +A +M ++
Sbjct: 203 LVRTMVDILYGGEHRIANI-----------------------------------VMTLAA 227
Query: 221 KLARTTILLWLLLFGNSFAYYAVVLLISELSS------LDTRCRSPLMFSHHPQDANLYI 274
+ ++ W F Y V++L + L S L T ++ L S H +
Sbjct: 228 AMVQSAGKRWPT-----FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIV-- 280
Query: 275 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGL-LFGA 333
+++ I G + L D GR+ + L ++P+ +N+ GL LF
Sbjct: 281 --VFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQ 338
Query: 334 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVV 393
+M V G + + + E +PT R+ G G +G +GG + P++ AL+A
Sbjct: 339 QMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIG-ALLAQRLDEYGTA 397
Query: 394 L 394
L
Sbjct: 398 L 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 12/187 (6%)
Query: 217 LFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 276
LF A T+LLW+ F Y L++ L SL + + + +
Sbjct: 213 LFGEGRATATLLLWISYFFTLIVLY---FLLNWLPSL--------LVGQGLSRSQAGLVQ 261
Query: 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 336
++ G LL L+D + + +++ L L S F A +
Sbjct: 262 IAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321
Query: 337 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLV 396
V+G +V A YPT VR TG GAA A+GR+G M PL+A L+A + T V+
Sbjct: 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA-LGRSTVGVIGA 380
Query: 397 VVIVTSI 403
+ V +
Sbjct: 381 SIPVILV 387
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 9e-10
Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 11/203 (5%)
Query: 209 SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQ 268
+ L L L L L R +LL L F SF YY ++ + L
Sbjct: 160 AILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLY----------LQEVLGLS 209
Query: 269 DANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS-ITIMFTLSCLFLLPLVTYQSNILTT 327
A + + L I G LL +L D GR+ + I L+ L LL L S L
Sbjct: 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269
Query: 328 GLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387
L + AF L A+E+ P R T +G N G +GG + PL+A L+
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329
Query: 388 QMTAVVLLVVVIVTSILSVMLIP 410
++L + + + L ++L+P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 43 GAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 102
G GL S SP YI I + G L S + F F G +V F +++ S
Sbjct: 133 GVGLASMLSPMYIAEIAPAHIRGK-LVSFNQFAIIF---------GQLVVYFVNYFIARS 182
Query: 103 VSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKI 162
+ W+ WR++ +IP+ + L L F PE+PRYL +G+ +A L KI
Sbjct: 183 GDAS---WLNT--DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKI 237
|
Length = 479 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 79/353 (22%), Positives = 128/353 (36%), Gaps = 61/353 (17%)
Query: 95 SSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAE 154
S + G+ + WR L+G ++P+ + L F PE+PRY + E
Sbjct: 180 HSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVE 239
Query: 155 AHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF 214
A + + + K+ A + E+A + +S T K
Sbjct: 240 -------QAASDMSAVLQVKIEAEPDEV---EKASTAVEVPKASWSDFFTHFFKW--RHG 287
Query: 215 LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYI 274
L T W LL A+Y V L + S + +S N Y
Sbjct: 288 KHLLG------TAGSWFLL---DIAFYGVNLNQKVILSA-------IGYSPPAATNNAYE 331
Query: 275 DEFITSLAEI--------PGLLLAAILVDTAGRKLSITIM--FTLSCLFLLPLVTYQSNI 324
+ + T++ + PG + LVD GRK I +M F L+ LF + Y N
Sbjct: 332 ELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK-PIQLMGFFILTVLFFVLGFAY--NH 388
Query: 325 LTTGLLFGARMCVMGAF-------TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPL 377
L+T + V+ F + I E++PT RST G + A G+ G ++
Sbjct: 389 LSTHGFLA--IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQF 446
Query: 378 VAVALV----------ANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 420
+ L + + + + IL +LIP ETKG+ L +
Sbjct: 447 GFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIP-ETKGKSLEE 498
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 16/154 (10%)
Query: 272 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL--FLLPLVTYQSNILTTGL 329
+Y F+ +LA +PG +++A+L+D GR + LSC+ F L +S ++
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMI---- 652
Query: 330 LFGARMCVMGAFTVSL-----IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 384
A +C+ G +++ + E+YP+ R+T G NA+ + ++ L+ + V
Sbjct: 653 ---ALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709
Query: 385 NCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 418
+ + +L++ L P +T+GQ L
Sbjct: 710 ITKAAPILFASAALACGGLLALKL-P-DTRGQVL 741
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSNRGM 89
R L L+ A LL +F+ + L+ R L+G+G G+ + + E+ PP RG
Sbjct: 64 RRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGR 123
Query: 90 WMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 138
+ +FS+ + +G++ + ++ L WRWL + +I +L L F
Sbjct: 124 ALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 62/348 (17%), Positives = 110/348 (31%), Gaps = 69/348 (19%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGM 89
R L L+ A LL F+ + L+ LR L G+G G+ + ++ PP RG
Sbjct: 62 RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGR 121
Query: 90 WMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLK 149
+ + S+ + +G+ + ++ WR + +I + + L
Sbjct: 122 ALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLA---------ALLL 172
Query: 150 GRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS 209
R + + + +P KL+ R
Sbjct: 173 PRPPPESKRPKPAEEAPAPLVPAWKLLLRDPV---------------------------- 204
Query: 210 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQD 269
L L L L A +L +L L+ A++ + L+
Sbjct: 205 -LWLLLALLLFGFAFFALLTYLPLYQEVLGLSALL--------------AGLLLG----- 244
Query: 270 ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF---TLSCLFLLPLVTYQSNILT 326
+ L G LL L D GR+ + + L+ L L L +S++
Sbjct: 245 --------LAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296
Query: 327 TGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMV 374
L F +++ P R T +G N G +GG +
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 289 LAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGA----FTVS 344
L+ L D GR+ + I L+ L +PL+ + + L F + +
Sbjct: 274 LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPM 333
Query: 345 LIYAAEIYPTSVRSTGAG-AANAMGRIGGMVCPLVAVALVANCHQMTAV 392
+ E++PT VR TGA A N G I G P +A ALVA A+
Sbjct: 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAI 382
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 1/134 (0%)
Query: 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCV 337
SL LA L D GR+ + I L L LL L+ S L L +
Sbjct: 40 AFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGG 99
Query: 338 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLV 396
F + A+ +P R G +A +G + PL+ L + + ++L +
Sbjct: 100 GALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAI 159
Query: 397 VVIVTSILSVMLIP 410
+ ++ ++L+ +L+P
Sbjct: 160 LALLAAVLAALLLP 173
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.98 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.97 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.95 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.95 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.95 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.95 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.94 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.94 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.94 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.93 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.92 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.92 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.92 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.91 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.91 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.91 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.9 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.9 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.9 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.9 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.9 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.89 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.89 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.89 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.88 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.88 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.88 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.87 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.87 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.87 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.86 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.86 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.86 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.85 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.85 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.85 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.85 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.85 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.85 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.84 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.84 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.84 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.84 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.84 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.84 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.84 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.82 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.82 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.82 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.82 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.82 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.81 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.8 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.79 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.79 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.78 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.78 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.78 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.76 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.76 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.76 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.75 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.75 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.73 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.71 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.7 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.7 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.7 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.67 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.67 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.67 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.63 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.63 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.63 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.62 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.61 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.6 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.56 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.55 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.55 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.53 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.48 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.46 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.44 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.44 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.44 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.38 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.37 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.35 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.34 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.24 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.23 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.23 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.18 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.18 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.18 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.15 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.14 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.13 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.11 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.08 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.08 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.08 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.08 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.08 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.08 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.07 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.07 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.07 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.07 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.07 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.06 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.04 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.03 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.02 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.02 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.01 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.01 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.01 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.99 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.98 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.98 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.93 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.93 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.92 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.91 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.91 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.87 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.87 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.87 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.86 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.84 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.84 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.83 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.82 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.79 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.78 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.77 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.75 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.73 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.72 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.7 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.7 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.69 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.68 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.68 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.68 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.67 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.67 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.66 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.66 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.65 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.65 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.64 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.63 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.63 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.62 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.61 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.6 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.59 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.59 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.58 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.57 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.56 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.55 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.54 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.53 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.52 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.52 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.49 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.47 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.45 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.45 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.44 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.43 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.43 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.41 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.4 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.33 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.32 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.3 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.22 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.19 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.18 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.18 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.16 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.15 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.15 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.12 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.11 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.1 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.05 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.03 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.01 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.01 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.99 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.92 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.91 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.87 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.84 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.84 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.8 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.77 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.7 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 97.7 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 97.67 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.66 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.63 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.6 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.58 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.35 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 97.35 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.32 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.29 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.23 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 97.13 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 97.13 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 97.12 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.11 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 97.07 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.05 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.01 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.92 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.78 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 96.7 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 96.57 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 96.46 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.36 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 96.26 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.18 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 96.09 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.08 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.81 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 95.77 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.59 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 95.52 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 95.27 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 94.85 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 94.82 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 94.22 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 94.16 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.97 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.78 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 93.4 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 90.46 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 89.28 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 88.71 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 87.61 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 86.45 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 83.78 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 83.65 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 81.89 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 81.02 |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-55 Score=397.38 Aligned_cols=381 Identities=37% Similarity=0.571 Sum_probs=318.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHHHHHHhHhHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~ 105 (427)
|+.||||.+.++.+...+.+++.+++||+..++++|.+.|+|+|+.|+..++..|..|..+|+..+-+. .+|.+|.++.
T Consensus 138 d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~e 216 (528)
T KOG0253|consen 138 DTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFE 216 (528)
T ss_pred hhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999888888999999999999988777 9999999999
Q ss_pred HHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCCCC
Q 014265 106 AIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTG 185 (427)
Q Consensus 106 ~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (427)
..+++.+.+..|||+......+|..+...+.+++||||||++.||+.+||.+.++++++.|++++|...+....+.+.++
T Consensus 217 a~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~ 296 (528)
T KOG0253|consen 217 ALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQ 296 (528)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhh
Confidence 99999999999999998888899888888899999999999999999999999999999999998877665432222111
Q ss_pred CCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC------C
Q 014265 186 ERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR------S 259 (427)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~------~ 259 (427)
++ .+. .+.+..+.++ ...+...+++++.|++++++|.+|+++.+.||+..+....+.+.+.-|. .
T Consensus 297 e~--~~~----~~~~~~a~ke---~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p 367 (528)
T KOG0253|consen 297 EE--SDL----DDSKSSAAKE---VRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLP 367 (528)
T ss_pred hh--hch----hhhhhccccc---cccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcch
Confidence 11 011 0001111111 1235667899999999999999999999999999988877765544221 1
Q ss_pred CCccC---CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 014265 260 PLMFS---HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 336 (427)
Q Consensus 260 ~~~~~---~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (427)
...+. -......-|.+.++..++++||.+++++++||+|||+.+..++++.+++.+++....+....++..+.+.+|
T Consensus 368 ~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf 447 (528)
T KOG0253|consen 368 TELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF 447 (528)
T ss_pred hHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 11111 011223458999999999999999999999999999999999999998888776655444556778888999
Q ss_pred HhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCc
Q 014265 337 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 416 (427)
Q Consensus 337 ~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~ 416 (427)
+.+++...|+|++|+|||.+|++|.|.|..++|+|++++|+++ +....+...+..+++.+++++++++.++|-|||||
T Consensus 448 isg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 448 ISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGR 525 (528)
T ss_pred HhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence 9999999999999999999999999999999999999999998 45555556789999999999999999999999999
Q ss_pred cc
Q 014265 417 EL 418 (427)
Q Consensus 417 ~l 418 (427)
++
T Consensus 526 ~l 527 (528)
T KOG0253|consen 526 SL 527 (528)
T ss_pred CC
Confidence 86
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=365.32 Aligned_cols=391 Identities=24% Similarity=0.341 Sum_probs=282.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+++++++++++++++++++++.+++++|++.|++.|+. ++..+++.|++|+++||+..++.+.++.+|.++
T Consensus 227 DR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il 306 (742)
T TIGR01299 227 DKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY 306 (742)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999986 566888999999999999999999999999998
Q ss_pred HHHHHHHhcC-------------CCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCC-
Q 014265 105 EAIGAWIIMP-------------RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKL- 170 (427)
Q Consensus 105 ~~~~~~~~~~-------------~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~- 170 (427)
++.+++.+.+ ..+||+++++.++|.++.++.++++||||+||..|||.+||.++++++++.|++..
T Consensus 307 a~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~ 386 (742)
T TIGR01299 307 AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKG 386 (742)
T ss_pred HHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcC
Confidence 8877655432 24699999999999988888888999999999999999999999999988775431
Q ss_pred -CCccccccc-ccCCCCC--CCCccchhh-cccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 014265 171 -PNGKLVARR-STLPTGE--RAPPELVHL-LSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVL 245 (427)
Q Consensus 171 -~~~~~~~~~-~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 245 (427)
+.+.+..+. +...... .+.++.... ..........+....+..++.+|++++++++++++.+|++..++||++..
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~ 466 (742)
T TIGR01299 387 HPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSV 466 (742)
T ss_pred chhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110000 0000000 000000000 00000000001111233567899999999999999999999999999999
Q ss_pred HHHHhhccc---c-----------------------------------------------------cCCCCCccCC----
Q 014265 246 LISELSSLD---T-----------------------------------------------------RCRSPLMFSH---- 265 (427)
Q Consensus 246 ~~~~l~~~~---~-----------------------------------------------------~~~~~~~~~~---- 265 (427)
|.|++.... . .|.-..+...
T Consensus 467 w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (742)
T TIGR01299 467 WFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFF 546 (742)
T ss_pred HHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhh
Confidence 999763210 0 0000000000
Q ss_pred --------------------------------------------CCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhH
Q 014265 266 --------------------------------------------HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 301 (427)
Q Consensus 266 --------------------------------------------~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~ 301 (427)
.......+...++.+++.++|.+++++++||+|||+
T Consensus 547 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~ 626 (742)
T TIGR01299 547 KNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR 626 (742)
T ss_pred hccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 000012355567778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHH
Q 014265 302 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVA 381 (427)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~ 381 (427)
++..+.++++++.+.+.+..+.....+..++..++..+.++..+++++|+||++.|++++|++++++++|++++|++.+.
T Consensus 627 ~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~ 706 (742)
T TIGR01299 627 MLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGS 706 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877776665554433222222222333344455678899999999999999999999999999999999999887
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCccc
Q 014265 382 LVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 418 (427)
Q Consensus 382 l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~l 418 (427)
+... +...++++++++.++++++.+++ |||+++.|
T Consensus 707 L~~~-~~~~pf~i~a~~lll~~ll~~~L-PET~~~~l 741 (742)
T TIGR01299 707 FVGI-TKAAPILFASAALACGGLLALKL-PDTRGQVL 741 (742)
T ss_pred HHHh-hhHHHHHHHHHHHHHHHHHHHhC-CCCccccc
Confidence 7654 34567778888877877777766 79999875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=336.17 Aligned_cols=362 Identities=20% Similarity=0.283 Sum_probs=266.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHhhhccccchh-hhhhhhhccCCCCchhHHHHHHHHHHHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSS---FSPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~---~a~~~~~l~v~R~l~Gi~~G~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||.++.++.++..+++++.. ..+++++++++|++.|+..|.... ...|+.|++|++.||.+..+.+.+..+|
T Consensus 85 ~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g 164 (485)
T KOG0569|consen 85 DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG 164 (485)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence 699999999999998888777665 468899999999999999998765 5678899999999999999999999999
Q ss_pred HhHHHHHHHH--hcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhh-cCchHHHHHHHHHHhhhcCCCCCCcccccc
Q 014265 102 SVSEAIGAWI--IMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCL-KGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 102 ~i~~~~~~~~--~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~-~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
.+++.+++.. +.....|++++.+..+|+++.++...++|||||||.. |||.|||+|.+++++..+..+ ++.+.+
T Consensus 165 ~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~---~~~e~~ 241 (485)
T KOG0569|consen 165 ILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVE---AEIEEM 241 (485)
T ss_pred HHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcch---hHHHHH
Confidence 9998776532 3456679999999999999999999999999999987 899999999999997653211 111000
Q ss_pred cccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHH------HHHHHHHHHHHHhh
Q 014265 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNS------FAYYAVVLLISELS 251 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~------~~~y~~~~~~~~l~ 251 (427)
..+.++ ++.+++ ....+.++++ +++|+...+...+.+++. +.+|+..++...-.
T Consensus 242 --------------~~e~~~--~~~~~~---~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~ 302 (485)
T KOG0569|consen 242 --------------LREIEE--EELEKK---KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGF 302 (485)
T ss_pred --------------HHHHHH--hccccc---cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCC
Confidence 000000 000000 1124556665 556665555444444433 44566555432100
Q ss_pred cccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh----hc-h-hhH
Q 014265 252 SLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQ-S-NIL 325 (427)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~----~~-~-~~~ 325 (427)
..+...+ .+...+....+..+++.+++||.|||++++.+...+.++.+.+.. .. . .|.
T Consensus 303 ---------------~~~~a~~-an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~ 366 (485)
T KOG0569|consen 303 ---------------TPEEAQY-ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWL 366 (485)
T ss_pred ---------------CHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 1112233 345557778899999999999999999999887776655444321 11 1 222
Q ss_pred HH---HHHHH-HHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHH
Q 014265 326 TT---GLLFG-ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVT 401 (427)
Q Consensus 326 ~~---~~~~~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i 401 (427)
.. +..++ ...+..|..+++|.+.+|+||++.|+++.+++..++++.+++..+.++.+.+..++ ..++.|.+.+++
T Consensus 367 ~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~ 445 (485)
T KOG0569|consen 367 SYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAI 445 (485)
T ss_pred HHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHH
Confidence 21 11111 11234556679999999999999999999999999999999999999988888776 678899999999
Q ss_pred HHHHHhhccCccCCccccccccccC
Q 014265 402 SILSVMLIPFETKGQELSDTVDFTS 426 (427)
Q Consensus 402 ~~~~~~~l~pEtkg~~l~e~~~~~~ 426 (427)
..+..+...||||||+.+|+.++.+
T Consensus 446 ~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 446 FLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred HHHHHHHhCcccCCCCHHHHHHHHH
Confidence 9999999999999999999887754
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=342.19 Aligned_cols=365 Identities=21% Similarity=0.245 Sum_probs=251.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccch------HHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPN------YITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFW 98 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~------~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~ 98 (427)
||+|||+++.++++++.+++++++++++ +.+++++|+++|++.|+.. ....|+.|++|+++||+.+++.+.++
T Consensus 81 d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~ 160 (502)
T TIGR00887 81 DKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQ 160 (502)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 5999999999999999999999998876 7899999999999999874 56788999999999999999999999
Q ss_pred HHhHhHHHHHHHHhc-----------------------CCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchH-H
Q 014265 99 TIGSVSEAIGAWIIM-----------------------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTA-E 154 (427)
Q Consensus 99 ~iG~i~~~~~~~~~~-----------------------~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~-e 154 (427)
.+|.++++.++..+. ..++||+++.++++|+++..+.++++|||||||..|||.| |
T Consensus 161 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~ 240 (502)
T TIGR00887 161 GFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQ 240 (502)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHH
Confidence 999988877765431 1257999999999999988888889999999999998885 4
Q ss_pred HHHHHHHHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcC----cchhhHHHHHH
Q 014265 155 AHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS----SKLARTTILLW 230 (427)
Q Consensus 155 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~ 230 (427)
+++.+++..+.+. ++ + +.+.++.+ + + + +..+ ..++++++ +++++.++.++
T Consensus 241 a~~~~~~~~~~~~---~~-~-----~~~~~~~~---------~---~-~-~~~~---~~~~~l~~~~~~~~~~~~~~~~~ 294 (502)
T TIGR00887 241 AASDMSAVLQVKI---EA-E-----PDEVEKAS---------T---A-V-EVPK---ASWSDFFTHFFKWRHGKHLLGTA 294 (502)
T ss_pred HHHHHHHHhcccc---cc-C-----cccccchh---------c---c-c-cchh---hhHHHHHHHHhhhHHHHHHHHHH
Confidence 7666666543211 00 0 00000000 0 0 0 0000 13455554 23334555556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCCCCccCCCCCCh-------hHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHH
Q 014265 231 LLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA-------NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI 303 (427)
Q Consensus 231 ~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~ 303 (427)
..++++.+.+|+...|.|.+....+. ........ .......+..+..+++.+++++++||+|||+++
T Consensus 295 ~~~~~~~~~~y~~~~~~p~i~~~~G~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l 368 (502)
T TIGR00887 295 GSWFLLDIAFYGVNLNQKVILSAIGY------SPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ 368 (502)
T ss_pred HHHHHHHHHHHccccccHHHHHHHcC------CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH
Confidence 67777888889887777665432111 00000000 011123344456677888999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhc---hhhHHHHHHHH-HHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHH
Q 014265 304 TIMFTLSCLFLLPLVTYQ---SNILTTGLLFG-ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA 379 (427)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~ 379 (427)
..+..+++++...+.... +.......... ..++..+..+..+.+++|+||++.|+++.|+++.+++++++++|++.
T Consensus 369 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~ 448 (502)
T TIGR00887 369 LMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGF 448 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 777655554443333211 11111111111 11223344567889999999999999999999999999999999999
Q ss_pred HHHHhhc----------chhHHHHHHHHHHHHHHHHHhhccCccCCcccccccc
Q 014265 380 VALVANC----------HQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVD 423 (427)
Q Consensus 380 ~~l~~~~----------~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~l~e~~~ 423 (427)
+++.+.. +...++++++++++++.+.. ++.|||||+++||..+
T Consensus 449 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 449 LYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSG 501 (502)
T ss_pred hhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence 9887632 22356778888887776655 4558999999988644
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=324.35 Aligned_cols=350 Identities=33% Similarity=0.563 Sum_probs=267.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.++++.++.+++.++.++++|+++++++|++.|++.|+. +....++.|+.|+++|+++.++.+.++.+|.++
T Consensus 152 Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~ 231 (505)
T TIGR00898 152 DRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL 231 (505)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999986 456788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++++++.+. +||+.+++.+++.++..+..+++||||+|+..++|.+|+++.+++.++.|+.+.+.+.... +
T Consensus 232 ~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~------~ 302 (505)
T TIGR00898 232 LPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSL------S 302 (505)
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhh------h
Confidence 888877653 4999999999998887777788999999999999999999999999887764322111000 0
Q ss_pred CCCCCccchhhcccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 014265 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
. ++ +.++.++ ...++++++ ++.++.++..+..|+...+.||+...+.+.+.
T Consensus 303 ~-----------~~-~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 354 (505)
T TIGR00898 303 L-----------EK-DLSSSKK----QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG------------ 354 (505)
T ss_pred h-----------hh-hhhhccC----CCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC------------
Confidence 0 00 0000000 013455664 56666777777778888888887766544321
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchh--hHHHHHHHHHHHHHhhhh
Q 014265 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN--ILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 341 (427)
.+.+.+.++.++..+++.++.++++||+|||+.+..+.++++++.+.+....+. +.......+..++..+.+
T Consensus 355 ------~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (505)
T TIGR00898 355 ------GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAF 428 (505)
T ss_pred ------CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Confidence 123566677788889999999999999999999988777766655544432222 222333334444455567
Q ss_pred HhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCcccccc
Q 014265 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~l~e~ 421 (427)
...+.+.+|++|++.|+++.|+++.++++|++++|++.+ + ...+...++++++++.+++++..+++ |||++++++|+
T Consensus 429 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l-pet~~~~l~~t 505 (505)
T TIGR00898 429 QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFL-PETKGVPLPET 505 (505)
T ss_pred HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcC-cCCCCCCCCCC
Confidence 788999999999999999999999999999999999888 4 33344567788888887777776655 79999999874
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=315.82 Aligned_cols=369 Identities=30% Similarity=0.407 Sum_probs=280.5
Q ss_pred hhhhhccchhhhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHH
Q 014265 16 NIFMFRLPHLWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIF 94 (427)
Q Consensus 16 ~~~~~~~~~~~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~ 94 (427)
.++++.++| |+|||+++++++++..++++++++++|+++++++||++|++.++.. +...++.|+.++++|+.+.++.
T Consensus 135 ~~i~g~lsD--~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~ 212 (521)
T KOG0255|consen 135 SLIFGPLSD--RFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLG 212 (521)
T ss_pred HhhheehHh--hcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHH
Confidence 445566666 7999999999999999999999999999999999999999998875 5577889999999999999996
Q ss_pred HHHHHHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcc
Q 014265 95 SSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGK 174 (427)
Q Consensus 95 ~~~~~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~ 174 (427)
..++..|.+..+..+++. .+||+.+++..+|+++.++.++..||||||+..|||.|||.++++++++.|+++....+
T Consensus 213 ~~~~~~~~~~~~~~a~~~---~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~ 289 (521)
T KOG0255|consen 213 GFFFVGGLMLPAGAAYIT---RDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKE 289 (521)
T ss_pred HHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHH
Confidence 667777777666666665 39999999999999887777777789999999999999999999999988744322211
Q ss_pred cccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014265 175 LVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAVVLLISELSSL 253 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~ 253 (427)
...... ..+. +.....+ ....+.++++ ++.+++++.++..|+.....||+..+....+.
T Consensus 290 ~~~~~~--------------~~~~-~~~~~~~---~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg-- 349 (521)
T KOG0255|consen 290 LLRLEL--------------LLRP-LKLLFTE---PKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLG-- 349 (521)
T ss_pred HHHHHH--------------HhhH-hhhhccC---CCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcC--
Confidence 110000 0000 0000000 0113556665 45888899999999989999999876544321
Q ss_pred cccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc--hh-hHHHHHH
Q 014265 254 DTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ--SN-ILTTGLL 330 (427)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~ 330 (427)
.+.+.+..+.+....++....+...|+.|||..+..+.+...++.+...... .. +......
T Consensus 350 ----------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (521)
T KOG0255|consen 350 ----------------GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILP 413 (521)
T ss_pred ----------------chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 3456777777778899999999999999999999888777766665544422 22 2344555
Q ss_pred HHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 014265 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
.+..++...++...+.+.+|++||.+|+++.+.++.+++++++++|++...... .....++.+++....+.++++.++.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l 492 (521)
T KOG0255|consen 414 LLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLL 492 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcC
Confidence 555666667778889999999999999999999999999999999988654433 3334444556777777777776677
Q ss_pred CccCCccccccccccC
Q 014265 411 FETKGQELSDTVDFTS 426 (427)
Q Consensus 411 pEtkg~~l~e~~~~~~ 426 (427)
|||+++.++|+.+|.+
T Consensus 493 pet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 493 PETKGKPLPGTLLDAE 508 (521)
T ss_pred cccCCCCCchhHHHHH
Confidence 8999999999888776
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=360.94 Aligned_cols=361 Identities=29% Similarity=0.437 Sum_probs=258.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSP---NYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~---~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||++++++.++..+++++.++++ |+++++++|++.|++.|+.. +...|+.|++|+++||+..++.+.++.+|
T Consensus 71 d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G 150 (451)
T PF00083_consen 71 DRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALG 150 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 599999999999999999999999999 99999999999999999975 56788899999999999999999999999
Q ss_pred HhHHHHHHHHhcCC---CCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccc
Q 014265 102 SVSEAIGAWIIMPR---LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 102 ~i~~~~~~~~~~~~---~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
.+++..+++..... .+||..+.++++|+++..+...++|||||||..|||.|||+++++++++.+.. +++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~---~~~~--- 224 (451)
T PF00083_consen 151 ILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIE---DEEI--- 224 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccc---cccc---
Confidence 99888776655332 45999999999999888888889999999999999999999999886433211 1111
Q ss_pred cccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCc-chhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccc
Q 014265 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS-KLARTTILLWLLLFGNSFAY-YAVVLLISELSSLDTR 256 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~l~~~~~~ 256 (427)
+++.+ +.. + .++.+ ..+++++++ +++++.+....+.+.+.+++ +....+.+.+....
T Consensus 225 -----~~~~~-----~~~----~--~~~~~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~-- 283 (451)
T PF00083_consen 225 -----EEIKA-----EKK----E--SQESK---ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENA-- 283 (451)
T ss_pred -----ccccc-----ccc----c--ccccc---eeeeecccccccccccccccccccccccccccccccccccccccc--
Confidence 00000 000 0 00000 234455654 34555555544444443333 23333334333111
Q ss_pred CCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---h--hch----hhHHH
Q 014265 257 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---T--YQS----NILTT 327 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~---~--~~~----~~~~~ 327 (427)
..+. . ....++.++...++.+++.+++||+|||++++.+...++++...+. . ... .....
T Consensus 284 ---------~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 352 (451)
T PF00083_consen 284 ---------GISN-S-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSI 352 (451)
T ss_pred ---------cccc-c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0111 1 2334555667777888888999999999998887766655544332 1 111 11111
Q ss_pred HHHHHHH-HHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 014265 328 GLLFGAR-MCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 328 ~~~~~~~-~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 406 (427)
....+.. .+..+..+..+.+++|+|||++|+++.|++..+++++++++|.+.+.+.+..+....+.+++++++++.++.
T Consensus 353 ~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~ 432 (451)
T PF00083_consen 353 VFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFV 432 (451)
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhe
Confidence 1122111 222344567789999999999999999999999999999999998877766554567788888888888888
Q ss_pred hhccCccCCccccccccc
Q 014265 407 MLIPFETKGQELSDTVDF 424 (427)
Q Consensus 407 ~~l~pEtkg~~l~e~~~~ 424 (427)
+++.||||||++||+.++
T Consensus 433 ~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 433 YFFLPETKGKTLEEIQEM 450 (451)
T ss_pred eEEEeeCCCCCHHHHHhh
Confidence 888999999999999876
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=311.21 Aligned_cols=366 Identities=23% Similarity=0.286 Sum_probs=258.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
|++|||++++++.+++.++++++++++|+.+++++|+++|+|.|+.. ++..|.+|++|++.||...+..+.++.+|..+
T Consensus 114 d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~ 193 (513)
T KOG0254|consen 114 DRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILL 193 (513)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999875 56788899999999999999999999999999
Q ss_pred HHHHHHHhcCC-CCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~-~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
+.++++..... .+||.++.+..+|+++..+..+++||||+||.++||.+||++.+++++..++.+ ...+...
T Consensus 194 ~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~-~~~~~~~------ 266 (513)
T KOG0254|consen 194 GYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED-VEVELEL------ 266 (513)
T ss_pred HHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc-hHHHHHH------
Confidence 87666665332 589999999999999988778899999999999999999999999997643111 1001100
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHH-HHHHHHHHHHhhcccccCCCCCc
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFA-YYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
.+ . ....+. ...+.+ ..+.+++++..+++.++...+...+.++ +.....+.+++....
T Consensus 267 --~~--~---~~~~~~---~~~~~~---~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~-------- 325 (513)
T KOG0254|consen 267 --LK--I---KLLVEA---EVAEGK---ASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA-------- 325 (513)
T ss_pred --HH--H---HHHHhh---hccccc---ccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc--------
Confidence 00 0 000000 000000 1345667666777776555444333332 222222223332111
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh--hc--h--------hhHHHHHH
Q 014265 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQ--S--------NILTTGLL 330 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~--~~--~--------~~~~~~~~ 330 (427)
...+.. ....++.++.++++.+++.+++||+|||++++.+.....++.+.++. .. . .+...+..
T Consensus 326 ---g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (513)
T KOG0254|consen 326 ---GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFL 401 (513)
T ss_pred ---CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHH
Confidence 011111 45567778888899999999999999999998877665555444332 11 1 11111211
Q ss_pred HH-HHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHH-HHhh
Q 014265 331 FG-ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSIL-SVML 408 (427)
Q Consensus 331 ~~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~~ 408 (427)
.. ...+..+..+++|.+.+|+||.++|+++.+++..++++.+++.....+.+.+..+....+.+++..+....+ .+++
T Consensus 402 ~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~ 481 (513)
T KOG0254|consen 402 CLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFF 481 (513)
T ss_pred HHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheE
Confidence 11 112334445688999999999999999999999999998888877777665553313456677777766666 7888
Q ss_pred ccCccCCcccccccc
Q 014265 409 IPFETKGQELSDTVD 423 (427)
Q Consensus 409 l~pEtkg~~l~e~~~ 423 (427)
+.|||||+++||+.+
T Consensus 482 ~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 482 FVPETKGLTLEEINE 496 (513)
T ss_pred EcccCCCCcHHHHHH
Confidence 889999999999765
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=290.59 Aligned_cols=373 Identities=22% Similarity=0.261 Sum_probs=267.0
Q ss_pred hhccchh---hhccchhHHHHHHHHHHHHHHHhhccc-------hHHHHHHHHHHhhhccccchhhhh-hhhhccCCCCc
Q 014265 19 MFRLPHL---WQNLVRMGFLGEALVTAGAGLLSSFSP-------NYITLITLRCLVGVGLGSGHVFLS-WFLEFVPPSNR 87 (427)
Q Consensus 19 ~~~~~~~---~~~GRk~~~~~~~~~~~~~~~~~~~a~-------~~~~l~v~R~l~Gi~~G~~~~~~~-~~~E~~p~~~R 87 (427)
++|+... ||+|||+++..++++..+++++++++. -..+|++.|++.|+|+|+++..++ ..+|.+-+++|
T Consensus 99 ~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~R 178 (538)
T KOG0252|consen 99 FGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTR 178 (538)
T ss_pred HHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccc
Confidence 3444444 499999999999999999999887753 256899999999999999987655 55799999999
Q ss_pred hhHHHHHHHHHHHhHhHHHHHHHHhc-------CCC--------CchHHHHhhhHHHHHHHHHhhcccCchhHHhh-cCc
Q 014265 88 GMWMVIFSSFWTIGSVSEAIGAWIIM-------PRL--------DWRWLLGLSSIPSFILLAFLGFQPESPRYLCL-KGR 151 (427)
Q Consensus 88 g~~~~~~~~~~~iG~i~~~~~~~~~~-------~~~--------~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~-~gr 151 (427)
|...+.+..+..+|.+.+++++..+. +.. =||..+.++++|++..++.+..||||+||-.. .++
T Consensus 179 Ga~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~ 258 (538)
T KOG0252|consen 179 GAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKK 258 (538)
T ss_pred cceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcC
Confidence 99999999999999988777665542 111 29999999999999999999999999999843 344
Q ss_pred hHHHHHHHHHHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHH
Q 014265 152 TAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWL 231 (427)
Q Consensus 152 ~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 231 (427)
.++|. ++.+++.+. +.. ++++. + ...+..++....+..+|...+.++.+....
T Consensus 259 ~~~a~-------~d~~k~~~~-~~~--------~~~~~-------~----~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~ 311 (538)
T KOG0252|consen 259 LKQAA-------GDMKKVLSV-DIE--------AESTA-------E----SDVPPPSNSFGLFSRLFLRWHGKHLLGTAG 311 (538)
T ss_pred Hhhhh-------hcccccccc-ccc--------hhhcc-------c----cCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 44443 222222221 000 00000 0 000011111122333443335567777778
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCCccCCCCCCh-----hHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHH
Q 014265 232 LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA-----NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIM 306 (427)
Q Consensus 232 ~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~ 306 (427)
.|+...+.+|+.+++...+.+.-+. .. ..+.. ....+.++..+..+||++++.+++|++|||..++.+
T Consensus 312 ~WFllDiafy~~nL~~s~I~~~ig~------~~-~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~G 384 (538)
T KOG0252|consen 312 TWFLLDIAFYGQNLFQSVIFSAIGV------IP-SANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMG 384 (538)
T ss_pred HHHhhhhhhhccccHHHHHHHhhcc------CC-CcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhh
Confidence 8999999999999998877641110 00 01111 123456777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhch----hhHH-HHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHH
Q 014265 307 FTLSCLFLLPLVTYQS----NILT-TGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVA 381 (427)
Q Consensus 307 ~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~ 381 (427)
+++.+++.+.++...+ .... .+..+...++..|+.+..+++++|+||+++|+++.|++.+.|..|++++.+.+.+
T Consensus 385 F~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~ 464 (538)
T KOG0252|consen 385 FFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLY 464 (538)
T ss_pred HHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhH
Confidence 9988877776665332 1111 2223334455677888899999999999999999999999999999999988888
Q ss_pred HHh-----hcchhHHHHHHHHHHHHHHHHHhhccCccCCccccccccccC
Q 014265 382 LVA-----NCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTS 426 (427)
Q Consensus 382 l~~-----~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~l~e~~~~~~ 426 (427)
+.+ ..+....+++++.++++..+..+++ ||||+|++||+.+|.+
T Consensus 465 ~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 465 LTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETKGKSLEEISNEEE 513 (538)
T ss_pred hhhccCCccccchHHHHHHHHHHHHhHheeEEe-ecccccCHHHhcChhh
Confidence 877 4555567888888888887766666 5999999999866543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=286.48 Aligned_cols=337 Identities=15% Similarity=0.132 Sum_probs=222.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHH--------HHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYIT--------LITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~--------l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+++.+++++++++++++++++|+.+ ++++|+++|++.|+.. +...++.|++|+++||++.++.+.
T Consensus 82 Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~ 161 (490)
T PRK10642 82 DKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDF 161 (490)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 5999999999999999999999999999975 8999999999999985 567888999999999999999998
Q ss_pred HHHHhHhHHHHHHHHhc--------CCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCC
Q 014265 97 FWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKT 168 (427)
Q Consensus 97 ~~~iG~i~~~~~~~~~~--------~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~ 168 (427)
++.+|.++++.+...+. ..+|||++|+++++++++..+++..+||||+|+..+++.++.. ++
T Consensus 162 ~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------~~ 231 (490)
T PRK10642 162 GSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------RE 231 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------cc
Confidence 88888887765543321 3589999999988777766666778999999974332221110 00
Q ss_pred CCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014265 169 KLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 248 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 248 (427)
. ..+ .++ ..+++++++ +++.....+..++.....+|+...|.|
T Consensus 232 ~-------------~~~------------------~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p 274 (490)
T PRK10642 232 G-------------LQD------------------GPK-----VSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMP 274 (490)
T ss_pred c-------------ccc------------------ccc-----CCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 000 022334433 334444444445556677888877777
Q ss_pred HhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH-HHh-hchh-hH
Q 014265 249 ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LVT-YQSN-IL 325 (427)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~-~~~-~~~~-~~ 325 (427)
.+..... +.+............++.+++..+.+.+.||+|||+.+..+.......... ... ..+. ..
T Consensus 275 ~~l~~~~----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (490)
T PRK10642 275 SYLSHNL----------HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGL 344 (490)
T ss_pred HHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 6542110 011111122233344556677788999999999999877665432221111 111 1111 11
Q ss_pred HHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcch-hHHHHHHHHHHHHHHH
Q 014265 326 TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ-MTAVVLLVVVIVTSIL 404 (427)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~ 404 (427)
.....++..++.....+....+.+|+||++.|+++.|+.+.++++++.++|++.+++.+..+. ..++++...+++++.+
T Consensus 345 ~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~ 424 (490)
T PRK10642 345 IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI 424 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 111122222222334456677888999999999999999999999999999999988765432 3344444555555555
Q ss_pred HHhhccCccCCccccc
Q 014265 405 SVMLIPFETKGQELSD 420 (427)
Q Consensus 405 ~~~~l~pEtkg~~l~e 420 (427)
..+++ |||+++.+++
T Consensus 425 ~~~~~-pes~~~~~~~ 439 (490)
T PRK10642 425 TGVTM-KETANRPLKG 439 (490)
T ss_pred HHHHh-ccccCCCCCC
Confidence 55544 8999887754
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=283.98 Aligned_cols=358 Identities=20% Similarity=0.219 Sum_probs=234.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFS------------PNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMV 92 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a------------~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~ 92 (427)
||+|||++++++..++.+++++++++ +++..++++|+++|++.|+.. ....++.|++|+++||++++
T Consensus 80 dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~ 159 (479)
T PRK10077 80 NRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVS 159 (479)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHH
Confidence 59999999999999999998888763 235678999999999999875 56788899999999999999
Q ss_pred HHHHHHHHhHhHHHHHHHHhc--------CCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhh
Q 014265 93 IFSSFWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQ 164 (427)
Q Consensus 93 ~~~~~~~iG~i~~~~~~~~~~--------~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~ 164 (427)
+.+.++.+|.+++++++..+. ...+||++|++.+++.++..+..+++||||+|+..++|.||+++.+++..+
T Consensus 160 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~ 239 (479)
T PRK10077 160 FNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG 239 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcC
Confidence 999999999988876655432 346899999999888887776677899999999989999988877776533
Q ss_pred hcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHH--HHHHHHHHHHHHH
Q 014265 165 VNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL--WLLLFGNSFAYYA 242 (427)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~y~ 242 (427)
.++.+ +... +.....+. .++ ....++. .....+.. ....+.+...++.
T Consensus 240 ~~~~~---~~~~--------------~~~~~~~~-----~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 289 (479)
T PRK10077 240 NTLAT---QALQ--------------EIKHSLDH-----GRK------TGGKLLM--FGVGVIVIGVMLSVFQQFVGINV 289 (479)
T ss_pred ChhHH---HHHH--------------HHHHHHHH-----hhh------hhhhhcc--hhHHHHHHHHHHHHHHHHhChhH
Confidence 21100 0000 00000000 000 0000111 10111111 1111222233344
Q ss_pred HHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh--h
Q 014265 243 VVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--Y 320 (427)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~--~ 320 (427)
...+.|.+.... +.+...........++..+++.+++++++||+|||+++..+.+..++..+.+.. .
T Consensus 290 ~~~~~p~i~~~~-----------g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~ 358 (479)
T PRK10077 290 VLYYAPEIFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 358 (479)
T ss_pred HHHHHHHHHHHc-----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh
Confidence 444445543211 011111223344556677888899999999999999998877666554443322 1
Q ss_pred ch-hhH-HHHHHHHHHHHHhhhh-HhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHH------hhcchhHH
Q 014265 321 QS-NIL-TTGLLFGARMCVMGAF-TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV------ANCHQMTA 391 (427)
Q Consensus 321 ~~-~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~------~~~~~~~~ 391 (427)
.+ ... ....+.....+....+ +..+.+.+|++|++.|+++.|+++.++++++++++.+.+.+. +..+....
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~ 438 (479)
T PRK10077 359 TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFS 438 (479)
T ss_pred cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccH
Confidence 11 111 1111111111111112 457899999999999999999999999999999988887554 23333456
Q ss_pred HHHHHHHHHHHHHHHhhccCccCCccccccccc
Q 014265 392 VVLLVVVIVTSILSVMLIPFETKGQELSDTVDF 424 (427)
Q Consensus 392 ~~~~~~~~~i~~~~~~~l~pEtkg~~l~e~~~~ 424 (427)
+.+++++++++.++.++++||||++++||..++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 471 (479)
T PRK10077 439 YWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471 (479)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 777777777777777778899999999986554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=258.93 Aligned_cols=324 Identities=16% Similarity=0.145 Sum_probs=210.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHH--------HHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~--------~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+++.+++++++++++++++++|+. +++++|+++|++.|+.. ....+..|+.|+|+||+.++..+.
T Consensus 89 Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~ 168 (438)
T PRK09952 89 DRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQV 168 (438)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 599999999999999999999999999987 59999999999999985 457788999999999999999999
Q ss_pred HHHHhHhHHHHHHHHhc--------CCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCC
Q 014265 97 FWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKT 168 (427)
Q Consensus 97 ~~~iG~i~~~~~~~~~~--------~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~ 168 (427)
++.+|.+++..+...+. ..++||.+|++.+++.++..+.+..+||||+|...++|.++++ +
T Consensus 169 g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~-----------~ 237 (438)
T PRK09952 169 GYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK-----------K 237 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc-----------c
Confidence 99999988766544432 2579999999999888776666678999998863322111000 0
Q ss_pred CCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014265 169 KLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 248 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 248 (427)
+ . ...+.+.+ .++.........++..+.+|....|.+
T Consensus 238 ~--------------------~---------------------~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (438)
T PRK09952 238 R--------------------I---------------------PVIEALLR--HPGAFLKIIALRLCELLTMYIVTAFAL 274 (438)
T ss_pred c--------------------C---------------------CHHHHHHH--chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00011111 112222223334445566676666655
Q ss_pred HhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh--hc-hhhH
Q 014265 249 ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQ-SNIL 325 (427)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~--~~-~~~~ 325 (427)
...... .+.+.........+.+...+++..+.++++||+|||+.+..+.++.......... .. +...
T Consensus 275 ~y~~~~----------~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (438)
T PRK09952 275 NYSTQN----------LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFW 344 (438)
T ss_pred HHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 443211 0111111111222334555667778899999999999887765544333222211 11 1111
Q ss_pred HHH-HHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhh-HhHhhhHHHHHHHHhhcc-h-hHHHHHHHHHHHH
Q 014265 326 TTG-LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR-IGGMVCPLVAVALVANCH-Q-MTAVVLLVVVIVT 401 (427)
Q Consensus 326 ~~~-~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~-~~~~i~p~~~~~l~~~~~-~-~~~~~~~~~~~~i 401 (427)
... ......++.....+..+.+.+|++|++.|+++.|+.+.+++ +++.++|.+.+++.+..+ . ..++.+.+.+.++
T Consensus 345 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i 424 (438)
T PRK09952 345 IVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLI 424 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 111 11222222233455678899999999999999999998876 799999999998877442 2 2344555555566
Q ss_pred HHHHHhhccCccC
Q 014265 402 SILSVMLIPFETK 414 (427)
Q Consensus 402 ~~~~~~~l~pEtk 414 (427)
+.+..+.+ +||+
T Consensus 425 ~~v~~~~~-~~~~ 436 (438)
T PRK09952 425 SAMTALLM-KDNQ 436 (438)
T ss_pred HHHHHHHc-cccc
Confidence 65555544 5754
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-29 Score=253.25 Aligned_cols=321 Identities=17% Similarity=0.194 Sum_probs=204.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHH--------HHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~--------~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+++..++++++++++++++++|+. +++++|+++|++.|++. ....++.|+.|+++||++.++.+.
T Consensus 88 Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~ 167 (432)
T PRK10406 88 DKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYV 167 (432)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHH
Confidence 599999999999999999999999999875 59999999999999874 567889999999999999999888
Q ss_pred HHHHhHhHHHHHHHHhc--------CCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCC
Q 014265 97 FWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKT 168 (427)
Q Consensus 97 ~~~iG~i~~~~~~~~~~--------~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~ 168 (427)
+...|.+++.++...+. +.+|||.+|+++++++++..+.+..+||||++.. + + .+
T Consensus 168 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~-~----------~~ 230 (432)
T PRK10406 168 TLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET------R-A----------LK 230 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h-h----------hc
Confidence 88888887766544332 2589999999999998887777778899987421 0 0 00
Q ss_pred CCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014265 169 KLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 248 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 248 (427)
+ + ..++++++ .++........++.....+|+...|.|
T Consensus 231 ~-----------------~------------------------~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~lp 267 (432)
T PRK10406 231 E-----------------A------------------------GSLKGLWR--NRRAFIMVLGFTAAGSLCFYTFTTYMQ 267 (432)
T ss_pred c-----------------c------------------------ccHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 01122332 122222233333444566777777777
Q ss_pred HhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH--hh-chh-h
Q 014265 249 ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--TY-QSN-I 324 (427)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~--~~-~~~-~ 324 (427)
.+.... .+.+.........+..+...++..+.++++||+|||+.+.....+..+...... .. .++ .
T Consensus 268 ~~l~~~----------~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (432)
T PRK10406 268 KYLVNT----------AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPY 337 (432)
T ss_pred HHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 654211 011111111122233344456667789999999999887665443322222111 11 111 1
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhH-hHhhhHHHHHHHHhhcc-hhHHHHHHHHHHHHH
Q 014265 325 LTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCH-QMTAVVLLVVVIVTS 402 (427)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~-~~~i~p~~~~~l~~~~~-~~~~~~~~~~~~~i~ 402 (427)
....+..+..+......+..+.+.+|+||++.|+++.|+++.++++ .+...|++...+ +..+ ....+++.+...+++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~ 416 (432)
T PRK10406 338 AAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVA 416 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHH
Confidence 1111121121222222345678899999999999999999999886 355588877744 4333 223344445555566
Q ss_pred HHHHhhccCccCCcccc
Q 014265 403 ILSVMLIPFETKGQELS 419 (427)
Q Consensus 403 ~~~~~~l~pEtkg~~l~ 419 (427)
.+..++ .|++||+.+
T Consensus 417 ~~~~~~--l~~~~~~~~ 431 (432)
T PRK10406 417 FLVSLM--LHRKGKGMR 431 (432)
T ss_pred HHHHHH--hhhcccccC
Confidence 555554 367777753
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-30 Score=255.79 Aligned_cols=367 Identities=20% Similarity=0.237 Sum_probs=234.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFS---PNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a---~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||+.+..+.++++++.+++.++ .++++++++|+++|++.|... ....++.|+.|+++|++++++.+.++.+|
T Consensus 96 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 175 (481)
T TIGR00879 96 DRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFG 175 (481)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHH
Confidence 59999999999999999999988554 345589999999999998865 45778899999999999999999999999
Q ss_pred HhHHHHHH---HHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccc
Q 014265 102 SVSEAIGA---WIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 102 ~i~~~~~~---~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
.++++.++ .......+||+.|.+.+++.++..+..+++||+|+++..+++.+++++.+++..+.+.++ .+....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 252 (481)
T TIGR00879 176 ILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED---KELLDE 252 (481)
T ss_pred HHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc---HHHHHH
Confidence 99998887 444566799999999877777776667789999999988888877766655543221110 000000
Q ss_pred cccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 014265 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
. ... ...... +.+..+..+......+++..++..+.....++.+....+....+.+.+....
T Consensus 253 ~----------~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 314 (481)
T TIGR00879 253 L----------ELI-DIKRSI---EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENA---- 314 (481)
T ss_pred H----------HHH-HHHHHH---HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHc----
Confidence 0 000 000000 0000000111222222211122222222223323222223333344433211
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---h-hch------hhHHHH
Q 014265 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---T-YQS------NILTTG 328 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~---~-~~~------~~~~~~ 328 (427)
+.+.........+..+..+++.++.+++.||+|||+.+..+..+.++..+.+. . ..+ ......
T Consensus 315 -------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (481)
T TIGR00879 315 -------GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIV 387 (481)
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHH
Confidence 01111122334455666778889999999999999988777655544443332 1 111 111111
Q ss_pred HHHHH-HHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 014265 329 LLFGA-RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVM 407 (427)
Q Consensus 329 ~~~~~-~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 407 (427)
..... ..+..+.....+.+.+|.+|++.|+++.|+.+...+++++++|.+.+.+.+..+....+.+++++++++.++.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 467 (481)
T TIGR00879 388 FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY 467 (481)
T ss_pred HHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHh
Confidence 11111 11122223456788899999999999999999999999999999999887765544566777888888878887
Q ss_pred hccCccCCccccc
Q 014265 408 LIPFETKGQELSD 420 (427)
Q Consensus 408 ~l~pEtkg~~l~e 420 (427)
++.||+|+++++|
T Consensus 468 ~~~~~~~~~~~~~ 480 (481)
T TIGR00879 468 FFLPETKGRTLEE 480 (481)
T ss_pred eecccCCCCChhh
Confidence 7788999988765
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=232.68 Aligned_cols=309 Identities=14% Similarity=0.088 Sum_probs=203.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHHHHHHhHhHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~ 105 (427)
||+|||+.+..+.+....+......++|+.+++++|+++|++.|..........|+.|+++|++++++.+.+.++|.+++
T Consensus 51 Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~ 130 (368)
T TIGR00903 51 DRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFA 130 (368)
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999998776655554443333334799999999999999998654455556899999999999999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHhhhHHHHHH-HHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCCC
Q 014265 106 AIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 106 ~~~~~~~~~~~~WR~~~~~~~i~~li~-~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++++..+....|||..|++.++++++. .+.++++||+|++.. +..+.++.
T Consensus 131 ~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~---~~~~~~~~-------------------------- 181 (368)
T TIGR00903 131 LAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA---EGFGFKDA-------------------------- 181 (368)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCcchHHH--------------------------
Confidence 988888888899999999877665554 445667899997621 10000000
Q ss_pred CCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccC
Q 014265 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS 264 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 264 (427)
...+++++++ +..+.....+++....+|++..|.|.+....+
T Consensus 182 --------------------------~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g--------- 223 (368)
T TIGR00903 182 --------------------------VKEFGALAGR---KDLWIIGAILGFGVALFDNLAIWLEAALRPAG--------- 223 (368)
T ss_pred --------------------------HHHHHHHHcC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
Confidence 0122334433 23344555667777888888889887763211
Q ss_pred CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChh---HHHHH-HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhh
Q 014265 265 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK---LSITI-MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGA 340 (427)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (427)
.+. . ......+....+.+..+++.||..|| +.... .....+.....+....+.........+..++..+.
T Consensus 224 --~s~-~---~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (368)
T TIGR00903 224 --LED-I---AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPA 297 (368)
T ss_pred --CCh-H---HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhh
Confidence 111 1 12222333444555567888887543 33222 23222222222222222222223333334445555
Q ss_pred hHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014265 341 FTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 341 ~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
++..+.+++|++|++.|+++.|+.+..+|++++++|.+.+.++. +....+.+++...+++.+.+.++
T Consensus 298 ~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~~ 364 (368)
T TIGR00903 298 YAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALLL 364 (368)
T ss_pred HHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhC
Confidence 66788999999999999999999999999999999998887763 44456777787777777776533
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-26 Score=226.05 Aligned_cols=333 Identities=17% Similarity=0.154 Sum_probs=209.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+.++.++++++.++.++++++.+++++|++.|++.|... ....++.|+.|+++|+++.++.+.++.+|.++
T Consensus 78 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~ 157 (426)
T PRK12307 78 DKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII 157 (426)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH
Confidence 59999999999999999999999999999999999999999998764 45678899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.+...+....+||+.+++.+++.++........||+++|...+.+ +.++ + +
T Consensus 158 ~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~~-~--------------~ 210 (426)
T PRK12307 158 AAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS------------GKGK-H--------------S 210 (426)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh------------cccc-c--------------c
Confidence 88777666677899999998776665555545557888765321100 0000 0 0
Q ss_pred CCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccC
Q 014265 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS 264 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 264 (427)
+ ... + .....++++++++..+.........+.....++....+.|.+....
T Consensus 211 ~----~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 261 (426)
T PRK12307 211 Q----SAW------------S---VFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE---------- 261 (426)
T ss_pred c----cch------------h---hhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 0 000 0 0001334455544333333332222222222333333444433211
Q ss_pred CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-hchhhHHH-HHHHHHHHHHhhhhH
Q 014265 265 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQSNILTT-GLLFGARMCVMGAFT 342 (427)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 342 (427)
+.+.........+..++.+++.++.+.+.||+|||+.+..+..++.+..+.... ..+..... ...+...+...+..+
T Consensus 262 -g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (426)
T PRK12307 262 -GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGG 340 (426)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhH
Confidence 011111122234445667888889999999999999887776655444333222 11211111 111111122223334
Q ss_pred hHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHhhccCccCC
Q 014265 343 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT-AVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 343 ~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
..+.+..|.+|++.|+++.|+.+.++++++.++|.+.+++.+..+... .++..+..+.++.+...+..||+.+
T Consensus 341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (426)
T PRK12307 341 LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRLK 414 (426)
T ss_pred HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChhhh
Confidence 566788999999999999999999999999999999998877665322 2333333344444433344456543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-26 Score=225.51 Aligned_cols=328 Identities=16% Similarity=0.227 Sum_probs=197.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHH--------HHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~--------~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+.++.+.++++++++++++++|+. +++++|+++|++.|... ....++.|++|+++||+.+++.+.
T Consensus 81 Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~ 160 (434)
T PRK15075 81 DRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSA 160 (434)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHH
Confidence 699999999999999999999999999987 47999999999999874 456788999999999999999888
Q ss_pred HHHHhHhHHHHHHHHh--------cCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCC
Q 014265 97 FWTIGSVSEAIGAWII--------MPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKT 168 (427)
Q Consensus 97 ~~~iG~i~~~~~~~~~--------~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~ 168 (427)
...+|..+++.++..+ .+..|||++|++.+++.++..+.+...||++++...++ +
T Consensus 161 ~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-----------------~ 223 (434)
T PRK15075 161 SQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH-----------------R 223 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-----------------c
Confidence 8888777666655443 24679999999876554444444445566544321000 0
Q ss_pred CCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014265 169 KLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 248 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 248 (427)
+ + . . ..++.+. +.++.........+.+...++....|.|
T Consensus 224 ~-~--------------------~---------------~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p 262 (434)
T PRK15075 224 P-S--------------------M---------------R---EIFRSLA--ANWRIVLAGMLMVAMTTVSFYLITVYTP 262 (434)
T ss_pred c-c--------------------c---------------c---cHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 0 0011111 1112222222233334555666666666
Q ss_pred HhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH-HH-hhchhhH-
Q 014265 249 ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LV-TYQSNIL- 325 (427)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~-~~-~~~~~~~- 325 (427)
.+.... .+.+.........+..+..+++..+.+++.||+|||+....+.......... .. .......
T Consensus 263 ~~l~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (434)
T PRK15075 263 TFGKTV----------LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFA 332 (434)
T ss_pred HHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 654211 0011111122234455667788889999999999999876654433222211 11 1111111
Q ss_pred HH-HHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhH-hHhhhHHHHHHHHhhcch-hHHHHHHHHHHHHH
Q 014265 326 TT-GLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQ-MTAVVLLVVVIVTS 402 (427)
Q Consensus 326 ~~-~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~-~~~i~p~~~~~l~~~~~~-~~~~~~~~~~~~i~ 402 (427)
.. .......++.....+..+.+.+|.+|++.|+++.|+.+.+++. ++.++|.+.+.+.+..+. ....+.+....+++
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~ 412 (434)
T PRK15075 333 RMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCG 412 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 11 1111111222222334567899999999999999999888886 588899999888776553 11121211122222
Q ss_pred HHHHhhccCccCCccccccc
Q 014265 403 ILSVMLIPFETKGQELSDTV 422 (427)
Q Consensus 403 ~~~~~~l~pEtkg~~l~e~~ 422 (427)
.+..+ ..++-.+..++..+
T Consensus 413 ~~~~~-~~~~~~~~~~~~~~ 431 (434)
T PRK15075 413 LIATL-VLYRRRGARLQAAE 431 (434)
T ss_pred HHHHH-Hhccccchhhhhhh
Confidence 23333 33466666666544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=220.14 Aligned_cols=319 Identities=22% Similarity=0.278 Sum_probs=210.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.++..++.++.++++|+..+++.|++.|++.|... ...+++.|+.|+++|++.+++.+....+|..+
T Consensus 75 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 154 (406)
T PRK11551 75 DRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL 154 (406)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999988764 55778899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHH-HHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~-~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.++..+....+||..+++.++..++.. +...++||+|++...+++.++.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------- 208 (406)
T PRK11551 155 ASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP-------------------------- 208 (406)
T ss_pred HHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh--------------------------
Confidence 98887777777899999988776544433 344568999876432211100000
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
..+.+++++..+.....+..++.....++....|.|.+....+
T Consensus 209 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-------- 251 (406)
T PRK11551 209 -----------------------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQG-------- 251 (406)
T ss_pred -----------------------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------
Confidence 0001111111122222333333344445555556665542111
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHh
Q 014265 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 343 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (427)
.+...........+++.+++.++.+.+.||.|||+.+..+.....+....+....+.+......+...++..+..+.
T Consensus 252 ---~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 328 (406)
T PRK11551 252 ---LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSV 328 (406)
T ss_pred ---CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHH
Confidence 11111122334455677888899999999999999887755544433333322222222222222222333445567
Q ss_pred HHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHhhcc
Q 014265 344 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQM-TAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 344 ~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~l~ 410 (427)
.+.+..|.+|++.|+++.|+.+..+++++.++|.+.+.+.+..+.. ..+.....+.+++.+..+.+.
T Consensus 329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999999887654332 223334444445555555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=221.95 Aligned_cols=318 Identities=17% Similarity=0.171 Sum_probs=199.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..++++++++++++++++|++++++.|+++|++.|+.. ....++.|++|+++||+.+++.+..+.+|.++
T Consensus 68 dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~ 147 (412)
T TIGR02332 68 AIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL 147 (412)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999874 45677899999999999999999999999999
Q ss_pred HHHHHHHhcC------CCCchHHHHhhhHHHHHHH-HHhhcccCchh---HHhhcCchHHHHHHHHHHhhhcCCCCCCcc
Q 014265 105 EAIGAWIIMP------RLDWRWLLGLSSIPSFILL-AFLGFQPESPR---YLCLKGRTAEAHRALEKIAQVNKTKLPNGK 174 (427)
Q Consensus 105 ~~~~~~~~~~------~~~WR~~~~~~~i~~li~~-~~~~~lpESP~---~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~ 174 (427)
++.++..+.. ..|||+.|.+.++++++.. +.++++||+|+ |+..+ |.+...+++++ +..+.
T Consensus 148 ~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~----~~~~~~~~~~~-~~~~~---- 218 (412)
T TIGR02332 148 GLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEE----DKKALKEMIDN-DQLTL---- 218 (412)
T ss_pred HHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHH----HHHHHHHHHHh-ccccc----
Confidence 8888766532 3699999999988877654 44567899994 44221 11111111111 10000
Q ss_pred cccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014265 175 LVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 254 (427)
. +.+.. . + + ++ ......++++++++ .+.....+++....++++..|.|.+....
T Consensus 219 -~-----~~~~~--------~-~-----~-~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 272 (412)
T TIGR02332 219 -E-----QPEGA--------F-A-----H-AA-MPQRSMLREIFTPA----IMLYTLAYFCLTNTLSAINIWTPQILQSF 272 (412)
T ss_pred -c-----ccccc--------c-c-----c-cc-ccHHHHHHHhcChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 00000 0 0 0 00 00011233444332 23344444556666777777777665321
Q ss_pred ccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHH-HHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 014265 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI-TIMFTLSCLFLLPLVTYQSNILTTGLLFGA 333 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (427)
. ...+............+..++|.++.+++.||++||+.. ........+.........+...........
T Consensus 273 ~---------~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (412)
T TIGR02332 273 N---------QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMA 343 (412)
T ss_pred C---------CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 0 000111112223445566788889999999999977743 333333322221111111111111111111
Q ss_pred HHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc
Q 014265 334 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 334 ~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~ 387 (427)
.++........+....|.+|++.|+++.|+.+.++++|++++|.+.+.+.+..+
T Consensus 344 ~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 344 SMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred HHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence 111122223455677899999999999999999999999999999987777654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-25 Score=215.83 Aligned_cols=317 Identities=18% Similarity=0.235 Sum_probs=199.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.++++.++.+++.++.+++++++.+++.|++.|++.|... ...+++.|+.|+++|+++.++.+..+.+|.++
T Consensus 72 Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 151 (405)
T TIGR00891 72 DRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV 151 (405)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999998764 55778899999999999999999999999999
Q ss_pred HHHHHHHhcCCCC--chHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccC
Q 014265 105 EAIGAWIIMPRLD--WRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 182 (427)
Q Consensus 105 ~~~~~~~~~~~~~--WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (427)
++.++..+....+ ||+.+.+.+++.++..+....+||+|++...+++.++.++..++..+ ++ + .
T Consensus 152 ~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~---~------- 217 (405)
T TIGR00891 152 AAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYG---GE-H---R------- 217 (405)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhc---cc-h---h-------
Confidence 8887766655444 99999998887777666667789999876433222222111111110 00 0 0
Q ss_pred CCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCc
Q 014265 183 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
.+. .. ++ .....+. ..++.+.................++...+.|......
T Consensus 218 ~~~---------~~--------~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 268 (405)
T TIGR00891 218 IAN---------IV--------MT---LAAAMVQ-SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-------- 268 (405)
T ss_pred hhh---------hh--------hh---hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH--------
Confidence 000 00 00 0000000 0011111111122222222222222222333222100
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHHHHHHHhhhh
Q 014265 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV-TYQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
.+.+............++.+++.++.+++.||+|||+.+..+...+.+...... ...+.+......+...++..+.+
T Consensus 269 --~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (405)
T TIGR00891 269 --LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIW 346 (405)
T ss_pred --hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccch
Confidence 001111112223345667788889999999999999988776655433322222 22222222222222223334445
Q ss_pred HhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc
Q 014265 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~ 387 (427)
+....+.+|.+|++.|+++.|+.+.++++++.++|.+.+.+.+..+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 347 GILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred hhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6677889999999999999999999999999999999998887654
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=212.01 Aligned_cols=319 Identities=25% Similarity=0.306 Sum_probs=212.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.++..++.++..+++|+..+++.|++.|++.|.. +...+++.|+.|+++|++..++.+..+.+|..+
T Consensus 77 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 156 (398)
T TIGR00895 77 DRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAV 156 (398)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHH
Confidence 5999999999999999999999999999999999999999999876 456788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHH-HHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIP-SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~-~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.++..+....+||..+++.++. .+...+...++||+|++...+ +.+++.+..++......++. +.+.
T Consensus 157 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~ 226 (398)
T TIGR00895 157 GGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA---------QSAL 226 (398)
T ss_pred HHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc---------cccc
Confidence 998887777778999999887544 444445566789999987655 45555555544432211100 0000
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
.++ +. +.+. .....+.+++++..++....+..++.....++....+.|.+....
T Consensus 227 ~~~-------------~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 280 (398)
T TIGR00895 227 PEQ-------------KA-TQGT---KRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVEL--------- 280 (398)
T ss_pred ccc-------------cc-ccch---hhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 000 00 0000 001233345555555555555555555566666666666443211
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHh
Q 014265 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 343 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (427)
+.+.........+..+..+++.++.+.+.||+|||.....................+........+...++..+..+.
T Consensus 281 --g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 358 (398)
T TIGR00895 281 --GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSG 358 (398)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 111111222344556677888999999999999995444433332222222221222222223333333444455677
Q ss_pred HHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHH
Q 014265 344 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 344 ~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l 382 (427)
.+.+..|.+|++.|+++.|+.+.++++++.++|.+.+++
T Consensus 359 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 359 LYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 889999999999999999999999999999999887754
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=214.08 Aligned_cols=341 Identities=14% Similarity=0.088 Sum_probs=206.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+.++.++++++.++.++++|++.+++.|++.|++.|.. +....++.|++|+++||+++++.+....+|.++
T Consensus 83 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~ 162 (434)
T PRK11663 83 DRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGAL 162 (434)
T ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998875 455678899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHH-HHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~-~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.+...+....+||+.|++.+++.++.. +..+++||+|++.......++.++ +.+.
T Consensus 163 ~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------~~~~ 220 (434)
T PRK11663 163 IPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD----------------------ALEL 220 (434)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc----------------------cccc
Confidence 88877777777899999998887765543 344567898865311100000000 0000
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhHHH-HhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCc
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFL-MLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
.++ . ++.+.+.. ..++ ..++. ++.+......+.....++++..|.|.+....
T Consensus 221 ~~~-----------~---~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-------- 273 (434)
T PRK11663 221 AQQ-----------Q---EGAGLSRK--EILTKYVLLN---PYIWLLSFSYVLVYVVRAAINDWGNLYMSET-------- 273 (434)
T ss_pred chh-----------c---cccCCChh--hhHHHHHhcC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 000 0 00000000 0010 11111 1222222223334445556666666544211
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh--Ch-hHHHHHHHHHH--HHHHHHHHhhchhhHHHHHHHHHHHHH
Q 014265 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA--GR-KLSITIMFTLS--CLFLLPLVTYQSNILTTGLLFGARMCV 337 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~--GR-r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (427)
.+.+............++..++.++++++.||+ +| |.......... ....+......+........+...++.
T Consensus 274 --~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 351 (434)
T PRK11663 274 --LGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFV 351 (434)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence 001111111223344566788899999999998 33 33322211111 111111111111111111122222222
Q ss_pred hhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCcc
Q 014265 338 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 338 ~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~ 417 (427)
.+.......+.+|.+|++.|+++.|+.++++++|+.++|.+.+++.+..+....+.+.+++.+++.+..+...++.+++.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (434)
T PRK11663 352 FGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPRE 431 (434)
T ss_pred hhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Confidence 22333445677999999999999999999999999999999998887666555666666666666665555444555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-24 Score=210.03 Aligned_cols=334 Identities=17% Similarity=0.011 Sum_probs=211.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSS-----FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~-----~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
||+|||+.+..+..+.+++.+..+ ..++++.+++.|++.|++.|.. +....++.|+.|+++|++..++.+....
T Consensus 77 dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (417)
T PRK10489 77 DRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVR 156 (417)
T ss_pred hhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHh
Confidence 599999998887777666655443 2578899999999999987754 4456677899999999999999999999
Q ss_pred HhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccccc
Q 014265 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179 (427)
Q Consensus 100 iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~ 179 (427)
+|.++++.++..+....+||+.+.+.++..++..+....+||+|+.- +++.++ .+
T Consensus 157 ~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~----~~------------------- 211 (417)
T PRK10489 157 LGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPREHP----LR------------------- 211 (417)
T ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cccccc----hH-------------------
Confidence 99999888877766667899999888777666655566677765310 000000 00
Q ss_pred ccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 014265 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
+....++..++++..+...+..... ...++...+.|.+....
T Consensus 212 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~----- 253 (417)
T PRK10489 212 -----------------------------SLLAGFRFLLASPVVGGIALLGGLL----TMASAVRVLYPALADEV----- 253 (417)
T ss_pred -----------------------------HHHHHHHHHHcChHHHHHHHHHHHH----HHHHhHHHhhHHHHHhc-----
Confidence 0001222233332222222221111 11223333344332210
Q ss_pred CCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhh
Q 014265 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG 339 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (427)
.+.+............++.+++.++.+++.||.++|+.+..+....++..+.+....+........+...++...
T Consensus 254 -----~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 328 (417)
T PRK10489 254 -----WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAI 328 (417)
T ss_pred -----cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 001111111222344566777888888999987777666665554443333333322222222222222222222
Q ss_pred hhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCcccc
Q 014265 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELS 419 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~l~ 419 (427)
.....+.+..|..|++.|+++.|+.+...++|+.++|.+.+.+.+..+....+...+++.++..++.....||+|++++|
T Consensus 329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (417)
T PRK10489 329 SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQT 408 (417)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 23455788999999999999999999999999999999999888876655566666666655555565666899999999
Q ss_pred ccccccCC
Q 014265 420 DTVDFTSD 427 (427)
Q Consensus 420 e~~~~~~~ 427 (427)
|.++|.+|
T Consensus 409 ~~~~~~~~ 416 (417)
T PRK10489 409 PPEVDASD 416 (417)
T ss_pred cccCCCCC
Confidence 99999987
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=204.05 Aligned_cols=333 Identities=18% Similarity=0.188 Sum_probs=202.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.++..++.++.++++|+++++++|++.|++.|.. +....++.|+.|+++|++..++.+....+|.++
T Consensus 54 d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 133 (399)
T TIGR00893 54 DRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII 133 (399)
T ss_pred HhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHH
Confidence 6999999999999999999999999999999999999999998876 456778899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.++..+....+||+.+.+.++..++..+. .+..||+|+-- +...+|.++...+ + ... +.
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~-----~~~----~~ 195 (399)
T TIGR00893 134 GGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWLTEEEKYIVVG-------G-----LLA----EQ 195 (399)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccCCHHHHhhcch-------h-----hcc----cc
Confidence 9888877777789999999888776665444 34567766421 1011111000000 0 000 00
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
++++ +.++. ....+++++.+ +.+......+.....++....+.|.+....
T Consensus 196 ~~~~---------------~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 245 (399)
T TIGR00893 196 QGKG---------------PSTPK---KYQIKELLKDR---RVWGLALGQFLVNIGLGFFLTWFPTYLVQE--------- 245 (399)
T ss_pred cccc---------------ccCCC---ccchHHHhcCH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------
Confidence 0000 00000 01222333322 222222333333444444444444332110
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhH--HHHHHH--HHHHHH--HHHHHhh-chhhHHHHHHHHHHHH
Q 014265 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL--SITIMF--TLSCLF--LLPLVTY-QSNILTTGLLFGARMC 336 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~--~~~~~~--~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 336 (427)
.+.+.........+..+..+++.++.+++.||+|||+ ...... ....+. ....... .+.............+
T Consensus 246 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (399)
T TIGR00893 246 -RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFF 324 (399)
T ss_pred -hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 0011111122233445667788899999999999996 211111 111111 1111111 1111111111222222
Q ss_pred HhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHh
Q 014265 337 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVM 407 (427)
Q Consensus 337 ~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~ 407 (427)
..+.....+.+.+|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+..+ ....+.+.+.+.+++.+..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 325 GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 233466788999999999999999999999999999999999998887665 44455555666555554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=202.36 Aligned_cols=296 Identities=19% Similarity=0.221 Sum_probs=189.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHH--------HHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~--------~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+++..+.++..++.++.++++++. .++++|+++|++.|.. +....++.|+.|+++|++..+..+.
T Consensus 60 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 139 (394)
T TIGR00883 60 DRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQV 139 (394)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHH
Confidence 599999999999999999999999999986 4899999999999876 4567788999999999999999999
Q ss_pred HHHHhHhHHHHHHHHhc--------CCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCC
Q 014265 97 FWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKT 168 (427)
Q Consensus 97 ~~~iG~i~~~~~~~~~~--------~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~ 168 (427)
+..+|.++++.+...+. ..++||..+.+.++..++..+....+||+|++...+++ +
T Consensus 140 ~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~ 203 (394)
T TIGR00883 140 GAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK----------------H 203 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc----------------c
Confidence 99999988877654432 35789999998877766666555667888764211000 0
Q ss_pred CCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014265 169 KLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 248 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 248 (427)
+.+ + ...++.++++ ++..+......+.....++....+.|
T Consensus 204 ~~~---------------~------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (394)
T TIGR00883 204 KKK---------------R------------------------GPIRETLTKH-RKPFLLGLGLVIATTTTFYLITTYLP 243 (394)
T ss_pred ccc---------------c------------------------CCHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0011122111 12223333333334444555544445
Q ss_pred HhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHH-HH-HHhh-chh-h
Q 014265 249 ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFL-LP-LVTY-QSN-I 324 (427)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~-~~-~~~~-~~~-~ 324 (427)
.+.... .+.+.........+..+...++..+.+.+.||+|||+.+........... .. .... .++ +
T Consensus 244 ~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (394)
T TIGR00883 244 TYLTQT----------LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFT 313 (394)
T ss_pred HHHHHh----------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 443110 00111112222344556677788889999999999997764433332222 11 1121 122 2
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhh-hHhHhhhHHHHHHHHhhcc
Q 014265 325 LTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~-~~~~~i~p~~~~~l~~~~~ 387 (427)
..........++.....+....+.+|.+|++.|+++.|+.+.++ .+++.++|.+.+.+.+..+
T Consensus 314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 314 LFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 21122222223333445677899999999999999999976665 4688899999998887655
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-23 Score=208.10 Aligned_cols=347 Identities=18% Similarity=0.227 Sum_probs=200.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.++..++.++.++++|+..++++|++.|++.|+.. ....++.|+.|+++|++..+.....+.+|..+
T Consensus 80 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 159 (496)
T PRK03893 80 DRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV 159 (496)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999988764 55778899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.+...+.+..+||+.|++.+++.++.+.....+||+++|...+++.++.++..+...+.++ +.. .......
T Consensus 160 ~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~---- 232 (496)
T PRK03893 160 AAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH-RII--NILLTLA---- 232 (496)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchh-HHH--HHHHHHH----
Confidence 998888777889999999987776665555566789998875433222211111111100000 000 0000000
Q ss_pred CCCCCccchhhcccCCCCCccCCCc----------hhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014265 185 GERAPPELVHLLSSNGGNKTTEGKS----------GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD 254 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 254 (427)
........... ....... .........+++.+.....+....+......++...+.|.+....
T Consensus 233 ---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~ 305 (496)
T PRK03893 233 ---AAAALWFCFAG----NLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD 305 (496)
T ss_pred ---HHHHHHHHHHh----hhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 00000000000 0000000 000000000111111111111111111111122333444433100
Q ss_pred ccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc-hhhH-HHHHHHH
Q 014265 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-SNIL-TTGLLFG 332 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~ 332 (427)
.+.+............++.+++.++.+++.||+|||+.+..+..+..+..+...... .... .....+.
T Consensus 306 ----------~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (496)
T PRK03893 306 ----------LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF 375 (496)
T ss_pred ----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 011111122233445566778889999999999999988776554443333222211 1111 1111222
Q ss_pred HHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHH
Q 014265 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLV 396 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~ 396 (427)
......+.......+..|.+|++.|++++|+.+.++.+|+.++|.+.+.+.+..+....+...+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~ 439 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLS 439 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 2222223345667788999999999999999999999999999999998877665444443333
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-22 Score=196.74 Aligned_cols=310 Identities=14% Similarity=0.065 Sum_probs=195.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.++..++.+.+++++|+++++++|+++|++.+... ...+++.|+.|+++|+++.++.+....+|..+
T Consensus 69 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~i 148 (390)
T PRK03545 69 SNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVL 148 (390)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999987754 45678899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.++..+.+..+||+.|++.++..++.... ...+||.|+ + +.++ .
T Consensus 149 g~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~-~~~~-~--------------------------- 195 (390)
T PRK03545 149 GLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS----E-HSGS-L--------------------------- 195 (390)
T ss_pred HhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----C-Ccch-H---------------------------
Confidence 9888877767789999999888776655433 344566542 0 0000 0
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
...+++++++..+.... ..+.....+++...+.+.+....
T Consensus 196 ----------------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~--------- 235 (390)
T PRK03545 196 ----------------------------KSLPLLFRRPALVSLYL---LTVVVVTAHFTAYSYIEPFVQQV--------- 235 (390)
T ss_pred ----------------------------HHHHHHHhCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 01112222222111111 11112222232222222221110
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHh
Q 014265 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 343 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (427)
.+.+.........+.+++.+++.++.+.+.||.|||.....................+.+..........++..+....
T Consensus 236 -~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 314 (390)
T PRK03545 236 -AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLA 314 (390)
T ss_pred -cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHH
Confidence 0011111122233445677888899999999999987654433332222222122222222111122222222222233
Q ss_pred HHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 014265 344 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 344 ~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
...+..|..| +.|+++.|+.+...++|..++|.+.+.+.+..+....+...+.+.+++.+......
T Consensus 315 ~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 315 MQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 4556667777 58899999999999999999999999888877766666666666666665555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-22 Score=195.72 Aligned_cols=319 Identities=13% Similarity=0.087 Sum_probs=202.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchh-hhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+++..+.++++++.+.+++++|+.+++++|+++|++.|...+ ...++.|+.| ++|+++++....+...|..+
T Consensus 69 dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~ 147 (393)
T PRK09705 69 QHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGL 147 (393)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999987643 4566778887 78999999999888888888
Q ss_pred HHHHHHHhcCC-CCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~-~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.++..+.+. .+||..+.+.+++.++......... +++.++ ++ +
T Consensus 148 g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-------------~~----------~--- 193 (393)
T PRK09705 148 GAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS--------AREVAS-------------SH----------K--- 193 (393)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh--------cCCCcc-------------cc----------C---
Confidence 88777665554 4899987766665544333221110 000000 00 0
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
+ + . + ....+.++ +.+.....++.....+++...|.|.+....+
T Consensus 194 -~-~--~---------------~------~~~~l~~~----~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g-------- 236 (393)
T PRK09705 194 -T-T--T---------------T------PVRVVFTP----RAWTLGVYFGLINGGYASLIAWLPAFYIEIG-------- 236 (393)
T ss_pred -C-C--c---------------C------CcccccCH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 0 0 0 0 00001111 1222222333344566666666665542111
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHh
Q 014265 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 343 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (427)
.+.........+..++.++|.++.+.+.||.|||+....+..+..+..........+... .......+...+.+..
T Consensus 237 ---~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~ 312 (393)
T PRK09705 237 ---ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV-LWAMVCGLGLGGAFPL 312 (393)
T ss_pred ---CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHhccchHHH
Confidence 111111222345566778899999999999999988877655544433322211111111 1111112222233344
Q ss_pred HHHhccccc-ccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHhhccCccCCccccc
Q 014265 344 SLIYAAEIY-PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ-MTAVVLLVVVIVTSILSVMLIPFETKGQELSD 420 (427)
Q Consensus 344 ~~~~~~Elf-Pt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~l~pEtkg~~l~e 420 (427)
......+.+ |++.|++..|+.+.++++++.++|.+.+++.+..+. ...+.+.+++++...++.+.++|||.+|...+
T Consensus 313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK09705 313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLWVK 391 (393)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchhcc
Confidence 555556666 478999999999999999999999999988887653 34455556666677777788889998876544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-23 Score=206.98 Aligned_cols=339 Identities=14% Similarity=0.089 Sum_probs=197.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSF-----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~-----a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
||+|||+.+..++++++++.++.++ ++|+.+++++|+++|++.|.. +....++.|++|+++||+++++.+....
T Consensus 89 Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~ 168 (467)
T PRK09556 89 DGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHN 168 (467)
T ss_pred hccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccc
Confidence 5999999998888887777665554 689999999999999998765 5566788999999999999999999999
Q ss_pred HhHhHHHHHHHHhcCC---CCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccc
Q 014265 100 IGSVSEAIGAWIIMPR---LDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL 175 (427)
Q Consensus 100 iG~i~~~~~~~~~~~~---~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~ 175 (427)
+|.++++++....... .+||..|.+.+++.++..+. +++.+++|+-. +..++ ++. . + ++..
T Consensus 169 lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~---~---~-~~~~---- 233 (467)
T PRK09556 169 LGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEI---F---G-EPIS---- 233 (467)
T ss_pred hhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhc---c---c-Cccc----
Confidence 9999887776544332 26999988877776654433 34456666421 11010 000 0 0 0000
Q ss_pred ccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHH-HHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014265 176 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF-LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD 254 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 254 (427)
+++ + .+ +.++. .....+ +..++. +..+......+.....+++...|.|......
T Consensus 234 ---------~~~------~-~~-----~~~~~-~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~ 288 (467)
T PRK09556 234 ---------EED------K-ET-----ESTDM-TKWQIFVEYVLKN---PVIWLLCFANIFLYIVRIGIDNWSPVYAFQE 288 (467)
T ss_pred ---------hhh------h-cc-----ccccC-cHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 000 0 00 00000 000011 112221 1233333344445555666666777543210
Q ss_pred ccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH-hhchhh-HHHHHHHH
Q 014265 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV-TYQSNI-LTTGLLFG 332 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 332 (427)
.+.+............++.+++.++.|+++||+|||+................. ...++. ...+..+.
T Consensus 289 ----------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (467)
T PRK09556 289 ----------LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA 358 (467)
T ss_pred ----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 011111112223344566788999999999999998876544332222211111 111221 21122222
Q ss_pred HHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhH-hHhhhHHHHHHHHh------------hcchhHHHHHHHHHH
Q 014265 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVA------------NCHQMTAVVLLVVVI 399 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~-~~~i~p~~~~~l~~------------~~~~~~~~~~~~~~~ 399 (427)
..++..+.....+.+..|.+|++.|+++.|+.+.++++ |++++|.+.+++.+ ..+....+.+++++.
T Consensus 359 ~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~ 438 (467)
T PRK09556 359 LGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAA 438 (467)
T ss_pred HHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHH
Confidence 22222333334456777999999999999999999997 77999999999887 223334555555666
Q ss_pred HHHHHHHhhcc-CccC
Q 014265 400 VTSILSVMLIP-FETK 414 (427)
Q Consensus 400 ~i~~~~~~~l~-pEtk 414 (427)
+++.+..+++. .|+|
T Consensus 439 ~~~~~~~~~~~~~~~~ 454 (467)
T PRK09556 439 IGCICLMAIVAVMEER 454 (467)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 66655554442 3554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=193.67 Aligned_cols=314 Identities=13% Similarity=0.021 Sum_probs=194.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc--------chHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFS--------PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a--------~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+++..+.+++.++++..+++ .++.++++.|+++|++.|.. +....+..|+.|+++|+++.++.+.
T Consensus 76 Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 155 (399)
T PRK05122 76 DTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGI 155 (399)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhh
Confidence 59999999999999888877766543 25778999999999998876 4456778899999999999999999
Q ss_pred HHHHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccc
Q 014265 97 FWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLV 176 (427)
Q Consensus 97 ~~~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~ 176 (427)
...+|.++++.++..+....+||..+++.++..++..+.....||+++ + + ++ +
T Consensus 156 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-~~--------------~------- 208 (399)
T PRK05122 156 ATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP----V-K-GE--------------R------- 208 (399)
T ss_pred hhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC----C-C-cc--------------c-------
Confidence 999999888888877777889999988766555443333322333221 0 0 00 0
Q ss_pred cccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 014265 177 ARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTR 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~ 256 (427)
. ++++.++ +.++.... +....+.++....+.+......+
T Consensus 209 -------------~----------------------~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~- 247 (399)
T PRK05122 209 -------------L----------------------PFRRVLG-RVWPYGMG----LALASIGFGTIATFITLYYAARG- 247 (399)
T ss_pred -------------h----------------------hHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcc-
Confidence 0 0000010 01111111 11112222222223332211100
Q ss_pred CCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 014265 257 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 336 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (427)
..... .......++.+++.++.+.+.||+|||+.+..+....+..........+.+.......+..++
T Consensus 248 ----------~~~~~--~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 315 (399)
T PRK05122 248 ----------WDGAA--LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG 315 (399)
T ss_pred ----------cccch--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 01111 112234455677788899999999999988776655544443333333322222222222222
Q ss_pred HhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCc
Q 014265 337 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 416 (427)
Q Consensus 337 ~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~ 416 (427)
....+........|.+|++.|+++.|+.+....+|+.++|.+.+.+.+..+....+.+.+++++++.+...++ ++.+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 394 (399)
T PRK05122 316 FSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL-YRRAPR 394 (399)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh-cccccc
Confidence 2223344456677899999999999999999999998888888888776665556666677777776666655 466666
Q ss_pred cccc
Q 014265 417 ELSD 420 (427)
Q Consensus 417 ~l~e 420 (427)
+.+|
T Consensus 395 ~~~~ 398 (399)
T PRK05122 395 AVPE 398 (399)
T ss_pred cCCC
Confidence 6665
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=193.08 Aligned_cols=308 Identities=14% Similarity=0.077 Sum_probs=189.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+++..+.++..++.+..++++|+++++++|++.|++.|... ....+..|+.| ++|+++.+.......+|.++
T Consensus 63 d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 141 (377)
T TIGR00890 63 DKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFI 141 (377)
T ss_pred HHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhH
Confidence 69999999999999999999999999999999999999999998764 44566778887 57999999999999999877
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHHh-hcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL-GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~-~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
...+...+....+||+.|++.++..++..... ++++|.|+- +. +++ .+.
T Consensus 142 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--------~~-----------~~~-----------~~~ 191 (377)
T TIGR00890 142 LSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQ--------LI-----------KTN-----------IEV 191 (377)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchh--------cc-----------ccC-----------ccc
Confidence 65555455556799999998888776655443 334443320 00 000 000
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
++ +. ...++.++++... ......+...+.++....+.+.+....
T Consensus 192 ~~--------------------~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 235 (377)
T TIGR00890 192 SV--------------------KD----YTVWEMLRTPQFW---VLYLSFFLNAVSGLLLIGLYKPYGQSL--------- 235 (377)
T ss_pred ch--------------------hh----hhHHHHHcCccHH---HHHHHHHHHhHHHHHHHHHHHHHHHHc---------
Confidence 00 00 0112233322211 111112222222221111112111100
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchh--hHHHHHHHHHHHHHhhhh
Q 014265 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN--ILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 341 (427)
+.+.........+..+...++.++.+++.||+|||+.+..+.....+.........+. ...........++.....
T Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 313 (377)
T TIGR00890 236 --GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTI 313 (377)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccch
Confidence 0111111223344566777888999999999999998877666555444433332211 111111112222222233
Q ss_pred HhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 014265 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTS 402 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~ 402 (427)
+....+.+|.+|++.|+++.|+.+....+|+.++|.+.+.+.+..+....+.+.+++.+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 4556789999999999999999999999999999999998877665444555555554443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-22 Score=198.46 Aligned_cols=320 Identities=16% Similarity=0.077 Sum_probs=184.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHHHHHHhHhHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~ 105 (427)
||+|||+++..+.++++++.++.++++|+..++++|++.|++.+.......++.|+.|+++||++.++......+|..++
T Consensus 96 dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~ 175 (476)
T PLN00028 96 DLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVT 175 (476)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999987654445567899999999999999887666666655
Q ss_pred HHHHHHh----c-----CCCCchHHHHhhhHHHHHHHHHhhcccC-chhHHhhcCchHHHHHHHHHHhhhcCCCCCCccc
Q 014265 106 AIGAWII----M-----PRLDWRWLLGLSSIPSFILLAFLGFQPE-SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL 175 (427)
Q Consensus 106 ~~~~~~~----~-----~~~~WR~~~~~~~i~~li~~~~~~~lpE-SP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~ 175 (427)
..+...+ . +..|||+.|++.++..++..+..++++| .|+ ++.+|.+ +.. +
T Consensus 176 ~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~~~--~------ 235 (476)
T PLN00028 176 QLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------KSG--T------ 235 (476)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------hcC--c------
Confidence 4433222 1 1258999999988877665544444433 332 1111100 000 0
Q ss_pred ccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014265 176 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDT 255 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~ 255 (427)
. +++ .....++..++. ++++..+..++......+....+.|.+....
T Consensus 236 ---------~------------------~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~- 282 (476)
T PLN00028 236 ---------M------------------PKD--SFSKVLRYGVTN---YRTWILALTYGYSFGVELTMDNIIAEYFYDR- 282 (476)
T ss_pred ---------c------------------ccc--cHHHHHHHHHcC---chhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-
Confidence 0 000 000111222211 1223333333333333344444444432110
Q ss_pred cCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhH-------HHHHHHHHHHHHHHHHHhhchhhHHHH
Q 014265 256 RCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL-------SITIMFTLSCLFLLPLVTYQSNILTTG 328 (427)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (427)
.+.+.........+.++...++.++.|+++||+|||. .......+.++..+.+....+......
T Consensus 283 ---------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 353 (476)
T PLN00028 283 ---------FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIV 353 (476)
T ss_pred ---------cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 0111112223334456677888899999999998762 222222222222222222222222222
Q ss_pred HHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHh
Q 014265 329 LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN-CHQMTAVVLLVVVIVTSILSVM 407 (427)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~ 407 (427)
.+.+..++..+..+..+.+.+|+.| +.|+++.|+.+..+++|++++|.+.. .+. .+....+++++++.+++.++.+
T Consensus 354 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~~ 430 (476)
T PLN00028 354 VMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPVA 430 (476)
T ss_pred HHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence 2222222333344556777888765 79999999999999999988887754 222 2234556677777777766665
Q ss_pred hcc
Q 014265 408 LIP 410 (427)
Q Consensus 408 ~l~ 410 (427)
+.+
T Consensus 431 ~~~ 433 (476)
T PLN00028 431 FIH 433 (476)
T ss_pred hee
Confidence 553
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=196.11 Aligned_cols=341 Identities=15% Similarity=0.162 Sum_probs=194.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSP----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~----~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
||+|||+.++.+.++.+++.+..++++ ++..+++.|++.|++.|.. +.....+.|+.|+++|++.+++.+.+..+
T Consensus 88 Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 167 (452)
T PRK11273 88 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 167 (452)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 599999999999999999999887763 7888999999999998876 34556678999999999999999998888
Q ss_pred hHh-HHHHHHHHhcCCCCchHHHHhhhHHHHHH-HHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccc
Q 014265 101 GSV-SEAIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 101 G~i-~~~~~~~~~~~~~~WR~~~~~~~i~~li~-~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
|.. .++++........+||+.|++.+++.++. .+..+++||+|+....+ +.+|.+ ++..++
T Consensus 168 g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~--------- 230 (452)
T PRK11273 168 GGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYK-------NDYPDD--------- 230 (452)
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhh-------hccccc---------
Confidence 864 34443322223459999999887776654 44456779988642111 111100 000000
Q ss_pred cccCCCCCCCCccchhhcccCCCCCccCCCchhhHH-HHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 014265 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF-LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRC 257 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ 257 (427)
.++. ++++.+.+ ..+ +.+++.+ ..+......+.....+|+...+.|.+.....
T Consensus 231 ----~~~~--------------~~~~~~~~---~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~-- 284 (452)
T PRK11273 231 ----YNEK--------------HEQELTAK---QIFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEVK-- 284 (452)
T ss_pred ----cccc--------------cCCCccHH---HHHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 0000 00000000 011 1122221 1222222223333445666666665542110
Q ss_pred CCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh--ChhHHHHH-HHHHHHHHHHHHHhh-chh-hHHHHHHHH
Q 014265 258 RSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA--GRKLSITI-MFTLSCLFLLPLVTY-QSN-ILTTGLLFG 332 (427)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~--GRr~~~~~-~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ 332 (427)
+.+.........+..+..+++.++.++++||+ |||..... ......+........ ..+ ....+..+.
T Consensus 285 --------g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (452)
T PRK11273 285 --------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIV 356 (452)
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 01111112223344566777889999999998 56653322 112111111111111 111 111122222
Q ss_pred HHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhh-hHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh-hcc
Q 014265 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMV-CPLVAVALVANCHQMTAVVLLVVVIVTSILSVM-LIP 410 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i-~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~-~l~ 410 (427)
...+..+.......+..|.+|++.|+++.|+.+.++++++.+ +|.+.+++.+..+....+.+++++++++.+... +..
T Consensus 357 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 357 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred HHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 222222333344567789999999999999999999998765 799988888776655566666666665554444 344
Q ss_pred CccCCcc
Q 014265 411 FETKGQE 417 (427)
Q Consensus 411 pEtkg~~ 417 (427)
+|+|++.
T Consensus 437 ~~~~~~~ 443 (452)
T PRK11273 437 GEKRHHE 443 (452)
T ss_pred cccchHH
Confidence 5766543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-21 Score=194.83 Aligned_cols=330 Identities=13% Similarity=0.140 Sum_probs=197.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFS--PNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 102 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a--~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~ 102 (427)
||+|||+.+..+.++++++.++..++ .++..+++.|+++|++.|... ....++.|+.|+++|+++.++...+..+|.
T Consensus 101 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 180 (465)
T TIGR00894 101 GKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGT 180 (465)
T ss_pred HHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999887544 568899999999999999874 567888999999999999999999999999
Q ss_pred hHHHHHHHHhcCC-CCchHHHHhhhHHHHHHHHHh-hcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccc
Q 014265 103 VSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFL-GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 180 (427)
Q Consensus 103 i~~~~~~~~~~~~-~~WR~~~~~~~i~~li~~~~~-~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~ 180 (427)
++++++...+... .+||..|++.++++++..+.+ ...||+|+... +.+.+|. +.+++ ..+++
T Consensus 181 ~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~-~~i~~---~~~~~----------- 244 (465)
T TIGR00894 181 FIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFEK-KYINS---SLQGQ----------- 244 (465)
T ss_pred HHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHHH-HHHHh---hcccc-----------
Confidence 9998887777666 499999999988877665544 45678885321 1111111 11111 00000
Q ss_pred cCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 014265 181 TLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~ 260 (427)
++ +.++ . ..++++++.+ ..+......++....+|....|.|.+.....
T Consensus 245 ------~~--------------~~~~-~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~----- 292 (465)
T TIGR00894 245 ------KG--------------STRQ-S---LPIKAIPKSL---PVWAIWFAIFGHFWLYTILPTYLPTFISWVL----- 292 (465)
T ss_pred ------cC--------------CCCC-C---CCHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 00 0000 0 1233344322 2333444445566666666667665542110
Q ss_pred CccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHH--------HHHHHH--HHHHHHHHHhhc-hhhHHHHH
Q 014265 261 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI--------TIMFTL--SCLFLLPLVTYQ-SNILTTGL 329 (427)
Q Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~--------~~~~~~--~~~~~~~~~~~~-~~~~~~~~ 329 (427)
+.+.........+..+...++.++++++.||.++|+.. ..+... .+...+...... +.......
T Consensus 293 -----g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (465)
T TIGR00894 293 -----RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIII 367 (465)
T ss_pred -----CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 11111112223344566778888999999987654211 111111 111111111111 11222222
Q ss_pred HHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhc--c-hhHHHHHHHHHHHHHHHHH
Q 014265 330 LFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC--H-QMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~--~-~~~~~~~~~~~~~i~~~~~ 406 (427)
+.+...+..+.....+....|..|. .++++.|+.+..+.++++++|.+.+++.+.. + ....+.+.+++.+++.++.
T Consensus 368 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 368 LTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred HHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 2222222222233344556677765 8999999999999999999999998776542 2 2345556666666666555
Q ss_pred hhc
Q 014265 407 MLI 409 (427)
Q Consensus 407 ~~l 409 (427)
.++
T Consensus 447 ~~~ 449 (465)
T TIGR00894 447 LIF 449 (465)
T ss_pred eee
Confidence 443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-21 Score=185.48 Aligned_cols=310 Identities=15% Similarity=0.116 Sum_probs=184.4
Q ss_pred hhccchhHHHH-HHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhH--HHHHHHHHHHh
Q 014265 26 WQNLVRMGFLG-EALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMW--MVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~~~~-~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~--~~~~~~~~~iG 101 (427)
||+|||+.++. +.+...++.++.++++|++.+++.|++.|.+.+.. +....+..|+.|++.|++. .+......++|
T Consensus 58 Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 137 (375)
T TIGR00899 58 DYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLA 137 (375)
T ss_pred hccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHH
Confidence 69999887655 55666677788899999999999999998776654 4445667799988888754 56777778889
Q ss_pred HhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccc
Q 014265 102 SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 180 (427)
Q Consensus 102 ~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~ 180 (427)
.++++.++..+....+||+.|++.+++.++..+. ++++||+|+....+ + ++
T Consensus 138 ~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------~~----------- 189 (375)
T TIGR00899 138 WVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA----L-------------TR----------- 189 (375)
T ss_pred HHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc----c-------------Cc-----------
Confidence 8888888777767789999999988876665444 44588887531000 0 00
Q ss_pred cCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 014265 181 TLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
. ..++.++ ++.+.-.......+..... ...+.|.+....
T Consensus 190 ---------~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----- 229 (375)
T TIGR00899 190 ---------L----------------------EVRGLLASRDTRLLFVACTLMWGCNIL----YIINMPLLIIHE----- 229 (375)
T ss_pred ---------c----------------------hhhhhhcCcchHHHHHHHHHHHHHHHH----HHhhhHHHHHHH-----
Confidence 0 0000111 1111111111222221111 111112111000
Q ss_pred CCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhh
Q 014265 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG 339 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (427)
.+.+.........+......++..+.+.+.||+|||+.+..+.....+.........+.+..........++...
T Consensus 230 -----~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 230 -----LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred -----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111112222334556677889999999999988766554443333322222222222222222222223
Q ss_pred hhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014265 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
..+....+..|..|++ |+++.|+.+...++|+.++|.+.+.+.+..+....+.+.+++.+++.+...++
T Consensus 305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 305 LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence 3455677889999876 55999999999999999999999988776655556666666666666555443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=192.95 Aligned_cols=340 Identities=16% Similarity=0.147 Sum_probs=196.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFS----PNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a----~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
||+|||+.+..+.++.+++.++.++. +++..+.+.|++.|++.|... ....++.|+.|+++||+++++.+....+
T Consensus 86 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~ 165 (438)
T TIGR00712 86 DRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNI 165 (438)
T ss_pred hccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHh
Confidence 59999999999999999988887764 467888999999999988764 4566778999999999999999999999
Q ss_pred hHhHHHHHHH-HhcCCCCchHHHHhhhHHHHHHH-HHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccc
Q 014265 101 GSVSEAIGAW-IIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 101 G~i~~~~~~~-~~~~~~~WR~~~~~~~i~~li~~-~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
|..+++.+.. .+....+||..|++.++..++.. ...+++||+|+... +.++. +.+ + +.+
T Consensus 166 g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~-----~~~--~--~~~------- 226 (438)
T TIGR00712 166 GGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG---LPPIE-----EYR--N--DYP------- 226 (438)
T ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC---CCCch-----hcc--c--ccc-------
Confidence 8887765543 33334689999999887766643 44556788886421 11000 000 0 000
Q ss_pred cccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 014265 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
++..++.+ ++.+.++ ...+.+++.+. .+......+.....+|+...+.|.......
T Consensus 227 -----~~~~~~~~-----------~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~--- 282 (438)
T TIGR00712 227 -----DDYNEKAE-----------QELTAKE--IFMQYVLPNKL---LWYIAIANVFVYLLRYGVLDWSPTYLKEVK--- 282 (438)
T ss_pred -----cccccccc-----------cccchHH--HHHHHHccCch---HHHHHHHHHHHHHHHHHHHHhHHHHHHHcc---
Confidence 00000000 0000000 00111222211 111212222233444555556555442110
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhH-HHHHHHHH--HHHHHHHHHhh-c-hhhHHHHHHHHH
Q 014265 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL-SITIMFTL--SCLFLLPLVTY-Q-SNILTTGLLFGA 333 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~-~~~~~~~~--~~~~~~~~~~~-~-~~~~~~~~~~~~ 333 (427)
+.+.........+..+..+++.++++++.||++||+ ........ ..+........ . +.+......+..
T Consensus 283 -------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (438)
T TIGR00712 283 -------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVI 355 (438)
T ss_pred -------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 011111122334455677888899999999995432 22221111 11111111111 1 112111111111
Q ss_pred HHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhH-hhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCc
Q 014265 334 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGG-MVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 334 ~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~-~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
.+...+..........|.+|++.|+++.|+.+..+++++ .++|.+.+.+.+..+....+.+++++.+++.+..+++.||
T Consensus 356 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (438)
T TIGR00712 356 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 435 (438)
T ss_pred HHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 121122222234567899999999999999999999875 5789999988876665556666677677777777777788
Q ss_pred cCC
Q 014265 413 TKG 415 (427)
Q Consensus 413 tkg 415 (427)
.|.
T Consensus 436 ~~~ 438 (438)
T TIGR00712 436 EKR 438 (438)
T ss_pred ccC
Confidence 763
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-21 Score=187.21 Aligned_cols=311 Identities=14% Similarity=0.126 Sum_probs=195.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.++.+++.++.++++|+++++++|++.|++.|... ....++.|+.|+++|++..+..+..+.+|..+
T Consensus 67 dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 146 (394)
T PRK03699 67 EIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI 146 (394)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999988654 45677889999999999998888888888877
Q ss_pred HHHHHHHh-cCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWII-MPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~-~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.+...+ ....+||+.|.+.+++.++..+..++ .+.|+. ++. . ++
T Consensus 147 ~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~-------~~~----------~-~~-------------- 193 (394)
T PRK03699 147 FPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL-------GKH----------A-PK-------------- 193 (394)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc-------ccc----------C-cc--------------
Confidence 77665443 44579999999887776655443322 222210 000 0 00
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
+ ++ + ..+ ....++.++....++.....+++...|.|.+.....
T Consensus 194 -~-~~-~-------------~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-------- 236 (394)
T PRK03699 194 -A-DK-P-------------VAK-------------EKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKF-------- 236 (394)
T ss_pred -c-cC-c-------------ccc-------------ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 0 00 0 000 001122233333334444555666666665542110
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHh
Q 014265 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 343 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (427)
+....+.+ .......+...+|.++.+.+.||++||+.+.....+............+........+...++..+.++.
T Consensus 237 g~s~~~~~--~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 314 (394)
T PRK03699 237 GMSLEDAG--NLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTT 314 (394)
T ss_pred CCChHHhh--HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 00011111 1122334566788899999999999999887665554443333322222222222222233333444555
Q ss_pred HHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014265 344 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 344 ~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
...+..|..|.+ +++..|.....+++|+.++|.+.+++.+..+....+++.+++.+++.+....+
T Consensus 315 ~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 315 IITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence 666777877754 67788999999999999999999988877665556666666655554444333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-20 Score=177.56 Aligned_cols=310 Identities=18% Similarity=0.175 Sum_probs=204.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
+|+-||+.++..+.++.++.++++++|||++++++|++.|++-|... ...++..+++|+++|++++++...+.+++.++
T Consensus 73 ~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~ 152 (394)
T COG2814 73 GRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVL 152 (394)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999874 55677889999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
+..++.++...+|||..|++.+..+++..+. +..+| |+- +.++ ++
T Consensus 153 GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~-----~~~~-------------~~-------------- 198 (394)
T COG2814 153 GVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSE-----ISGS-------------LP-------------- 198 (394)
T ss_pred hccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc-----CCCC-------------CC--------------
Confidence 9999999999999999999888887775544 45677 320 0000 00
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
.......++++++......+...++++-.+..|.. ..|.+.+..
T Consensus 199 -------------------------~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftY--i~P~L~~v~--------- 242 (394)
T COG2814 199 -------------------------GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTY--IRPFLESVA--------- 242 (394)
T ss_pred -------------------------cchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHh--HHHHHHHcc---------
Confidence 00001122333333233333333333222222211 123332111
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHhhhhH
Q 014265 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQSNILTTGLLFGARMCVMGAFT 342 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 342 (427)
+.+........+..+++.++|.+++|.+.|| +.|+.+...........+.+.+ ..+.+.....++...+.....-.
T Consensus 243 --g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~ 319 (394)
T COG2814 243 --GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQ 319 (394)
T ss_pred --CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhh
Confidence 1122233445667788889999999999999 7777666554443333333333 22222222222222111111112
Q ss_pred hHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014265 343 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 343 ~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
......++ .-++.+..+.++.....++|..++..+.+.+++..+.....++-+.+.+++.++....
T Consensus 320 ~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 320 GLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred HHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 22344455 5578999999999999999999999999988888766556666666666666555544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-20 Score=182.58 Aligned_cols=304 Identities=17% Similarity=0.091 Sum_probs=185.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHh---hc-----cchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLS---SF-----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~---~~-----a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+.+..+.+...++++.. ++ .+|++.++++|+++|++.+.. +....+..|+.|+++|+++++..+.
T Consensus 76 Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~ 155 (392)
T PRK12382 76 DQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGM 155 (392)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHH
Confidence 59999999999888777665432 22 368899999999999998865 3456778899999999999999999
Q ss_pred HHHHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccc
Q 014265 97 FWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLV 176 (427)
Q Consensus 97 ~~~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~ 176 (427)
....|..+++.++..+....+||..+.+..+..++........||+|+ + ++ ++
T Consensus 156 ~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~-------------~~------- 208 (392)
T PRK12382 156 AMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPA------H-AG-------------ER------- 208 (392)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCC------C-cc-------------cC-------
Confidence 999999998888877777789999877655444333332222333221 0 00 00
Q ss_pred cccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 014265 177 ARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTR 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~ 256 (427)
++. ....+.++ +..+.... ....+.....+.+......
T Consensus 209 -------------~~~------------------~~~~~~~~-----~~~~~~~l----~~~~~~~~~~~~~~~~~~~-- 246 (392)
T PRK12382 209 -------------PSL------------------WSVVGLIW-----KPGLGLAL----QGVGFAVIGTFVSLYFASK-- 246 (392)
T ss_pred -------------chH------------------HHHHHHHH-----HhHHHHHH----HHHHHhHHHHHHHHHHHhc--
Confidence 000 00000111 11111111 1122222222222221100
Q ss_pred CCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 014265 257 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 336 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (427)
+.... ........++.+++..+.+.+.||+|||+.+..+..+.++..+......+.+.......+..++
T Consensus 247 ---------~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 315 (392)
T PRK12382 247 ---------GWAMA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAG 315 (392)
T ss_pred ---------CCchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 00111 1222334455667788899999999999888776655444443333322222221212222222
Q ss_pred HhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014265 337 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 337 ~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
.............|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+....+.+.+.+.+++.+..++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 316 CSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 2223344566778999999999999999999999999999999988877665566677777666666655544
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=179.90 Aligned_cols=290 Identities=27% Similarity=0.318 Sum_probs=206.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+..+..++.+...+++|+..++++|++.|++.+.. +...++..|+.|+++|++..++.+....+|..+
T Consensus 59 d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 138 (352)
T cd06174 59 DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALL 138 (352)
T ss_pred HHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999876 456788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.++..+....+||..+.+.+++.++..+...++| |
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------------------------------- 175 (352)
T cd06174 139 GPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL--R----------------------------------------- 175 (352)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--H-----------------------------------------
Confidence 998888877777899999988877766555443332 0
Q ss_pred CCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccC
Q 014265 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS 264 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 264 (427)
+........+.....+.....+.+.+....
T Consensus 176 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 205 (352)
T cd06174 176 ----------------------------------------LLLLLALAFFLLSFGYYGLLTYLPLYLQEV---------- 205 (352)
T ss_pred ----------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh----------
Confidence 000011111222222222222333322110
Q ss_pred CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhH-HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHh
Q 014265 265 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL-SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 343 (427)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (427)
.+.+............+...++..+.+.+.||.|||+ .+..+..+..+.........+.+..........++.......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 285 (352)
T cd06174 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPA 285 (352)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchh
Confidence 0111122233345556777888889999999999999 777766665555444433333222223333333444445678
Q ss_pred HHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Q 014265 344 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVML 408 (427)
Q Consensus 344 ~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 408 (427)
...+..|..|++.|++..|+.+...++++.++|.+.+.+.+..+....+.+.+.+.+++.+..++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 89999999999999999999999999999999999998887655556677777777776655543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=180.16 Aligned_cols=295 Identities=14% Similarity=0.055 Sum_probs=187.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccc-----hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSP-----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~-----~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
||+|||+.+..+.++..++.++..+++ |+++++++|++.|++.|.. +...+++.|+.|+++|++..+..+....
T Consensus 59 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (365)
T TIGR00900 59 DRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRS 138 (365)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHH
Confidence 599999999999999999988888887 9999999999999998875 4567888999999999999999999999
Q ss_pred HhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhc--ccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccc
Q 014265 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF--QPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVA 177 (427)
Q Consensus 100 iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~--lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~ 177 (427)
+|.++++.++..+....+||+.+.+.++..++..+..+. .||.++- .+.++.++..
T Consensus 139 ~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------------------ 196 (365)
T TIGR00900 139 LFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS----EIQALSNAVL------------------ 196 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc----cccccchhHH------------------
Confidence 999999988877777789999998877766554433322 2332210 0000000000
Q ss_pred ccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhccccc
Q 014265 178 RRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVV-LLISELSSLDTR 256 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~l~~~~~~ 256 (427)
++....++.+++++..+........ ....+++.. .+.|.+....
T Consensus 197 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-- 241 (365)
T TIGR00900 197 ------------------------------RDTREGIKFVLKNPLLRTLLLLALL---FNLVFAPAIVALFPYVQSKY-- 241 (365)
T ss_pred ------------------------------HHHHhHHHHHHcCcHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHH--
Confidence 0000122334443332222222211 112222221 2223322100
Q ss_pred CCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHH
Q 014265 257 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS-NILTTGLLFGARM 335 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 335 (427)
.+.+...........+++.+++.++.+.+.||.|||+.+..+....++.........+ .+......+...+
T Consensus 242 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (365)
T TIGR00900 242 --------LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGV 313 (365)
T ss_pred --------hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Confidence 0011111122233445667778888899999999999887765555444443333222 2222222222223
Q ss_pred HHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 336 CVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 336 ~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
+..........+..|..|++.|+++.|+.+...++++.++|.+.+.+.+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 314 GYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456788999999999999999999999999999999998877654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-21 Score=179.00 Aligned_cols=325 Identities=22% Similarity=0.262 Sum_probs=215.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||.+-|..+-+.+++.++..++.+++++...+.++-++.|..=|.. |+....+..|.|+++||+..++++.+.++|..+
T Consensus 89 Dr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal 168 (448)
T COG2271 89 DRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL 168 (448)
T ss_pred ccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch
Confidence 4888888889999999999999999999999999999999998754 566677789999999999999999999999988
Q ss_pred HHHHH--HHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccccccc
Q 014265 105 EAIGA--WIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 181 (427)
Q Consensus 105 ~~~~~--~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~ 181 (427)
.+++. ..+..+.+||..|++.++.+++..+. ++.+.++|+=. |-+ .+++.+. ++
T Consensus 169 ~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---GLP-----~ie~~~~---d~------------ 225 (448)
T COG2271 169 APLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---GLP-----PIEEYRG---DP------------ 225 (448)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---CCC-----CHHHhhc---Cc------------
Confidence 88777 56666779999999999888776544 45567777521 111 0111100 00
Q ss_pred CCCCCCCCccchhhcccCCCCCccCCCchhhHHH----HhcCcchhhHHHHHHHHHHHHHHHH---HHHHHHHHHhhccc
Q 014265 182 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFL----MLFSSKLARTTILLWLLLFGNSFAY---YAVVLLISELSSLD 254 (427)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~---y~~~~~~~~l~~~~ 254 (427)
.|.+ ++ +++ .+..+.+. ..++++. +|.+...+.+.| |++.-|.|......
T Consensus 226 --------~e~~---~~---~~~---~~~ls~~~i~~~YVL~Nk~------iW~la~a~vfvYivR~gi~dW~p~YL~e~ 282 (448)
T COG2271 226 --------LEIY---EE---EKE---NEGLTAWQIFVKYVLKNKL------IWLLALANVFVYVVRYGINDWGPLYLSEV 282 (448)
T ss_pred --------hhhh---hh---hcc---CCCccHHHHHHHHHHcChH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 0000 00 000 00011111 2223322 444444555555 78888877654211
Q ss_pred ccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh--ChhHHHHHHHHHHH-HHHHHHHhhc--hhhHHHHH
Q 014265 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA--GRKLSITIMFTLSC-LFLLPLVTYQ--SNILTTGL 329 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~--GRr~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~ 329 (427)
. +.+..+......+.-.++++|.+++|+++||+ |||......+++.. +++....... +.....++
T Consensus 283 k----------~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~ 352 (448)
T COG2271 283 K----------GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAIL 352 (448)
T ss_pred c----------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Confidence 1 12222223334455678899999999999995 88987755444333 3333322222 22444555
Q ss_pred HHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhH-hHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 014265 330 LFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~-~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 406 (427)
++...+++.|+--+....+.|.-|.+.-+++.|+...++++ |+..+....+++.+..+=...++++.+.++++.+..
T Consensus 353 l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 353 LFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred HHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence 66666777788778889999999999999999999999998 888887777766565332344555555555544443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=183.36 Aligned_cols=312 Identities=17% Similarity=0.199 Sum_probs=184.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.++.+++.++.++++++++++++|++.|++.|.. +...+++.|+.|+++|++..++.+....+|.++
T Consensus 55 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 134 (379)
T TIGR00881 55 DRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGL 134 (379)
T ss_pred HhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHH
Confidence 5999999999999999999999999999999999999999999876 456778899999999999999999999999998
Q ss_pred HH-HHHHHhcCCCCchHHHHhhhHHHHHH-HHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccC
Q 014265 105 EA-IGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 182 (427)
Q Consensus 105 ~~-~~~~~~~~~~~WR~~~~~~~i~~li~-~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (427)
++ ++...+....+||+.+.+.++..++. .+..+..||+|+.. ++.++. +.+++ +
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------~~~~~--------~ 190 (379)
T TIGR00881 135 LPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC---GLPPAE-------------EMPNE--------E 190 (379)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcccc---ccCccc-------------cCccc--------c
Confidence 88 45555556789999998877666554 34445678877521 110000 00000 0
Q ss_pred CCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCc
Q 014265 183 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
.++.++ + +++.. +......+.+++.+. .+......+......++...+.|......
T Consensus 191 ~~~~~~--------~---~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 246 (379)
T TIGR00881 191 PDGDAE--------K---KEEEL--TKKQIFLQYVLLNKV---LWYISLGYVFVYVVRTGILDWSPLYLTQE-------- 246 (379)
T ss_pred cccccc--------c---ccccc--cchHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 000000 0 00000 000012223333222 11122222222233333333334332110
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhC-hhHH-HHHHHHHHH-HHHHHHHhh-c-hhhHHHHHHHHHHHHH
Q 014265 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG-RKLS-ITIMFTLSC-LFLLPLVTY-Q-SNILTTGLLFGARMCV 337 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~G-Rr~~-~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 337 (427)
.+.+.........+..+..+++.++.+++.||.+ ||+. ......... ......... . +........+....+.
T Consensus 247 --~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 324 (379)
T TIGR00881 247 --KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLV 324 (379)
T ss_pred --hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH
Confidence 0011111222334456677888999999999863 3332 222111111 111111111 1 1111112222222233
Q ss_pred hhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc
Q 014265 338 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 338 ~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~ 387 (427)
.+.....+.+..|.+|++.|+++.|+.+.++++++.++|.+.+.+.+..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 325 YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred hhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 34445567789999999999999999999999999999999998877644
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=182.53 Aligned_cols=323 Identities=16% Similarity=0.136 Sum_probs=194.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.++++..+..++++++++++|+.+++++|+++|++.|.. +...+++.|+.|+++|+++.++......+|..+
T Consensus 62 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 141 (485)
T TIGR00711 62 KRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPAL 141 (485)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhh
Confidence 5999999999999999999999999999999999999999998876 456788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHH-HhhcccCchhHHhhcCchHHHHHHHHH-------HhhhcCCCCCCcccc
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEK-------IAQVNKTKLPNGKLV 176 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~-~~~~lpESP~~L~~~gr~~ea~~~l~~-------~~~~~~~~~~~~~~~ 176 (427)
++.++..+....+||+.|++.+.++++... ..+.+||.++ ..+++.|.....+.. .....+++.
T Consensus 142 g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~------ 213 (485)
T TIGR00711 142 GPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEGPER------ 213 (485)
T ss_pred hhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCCCC------
Confidence 998888887889999999988776655443 3445677554 112222221111000 000000000
Q ss_pred cccccCCCCCCCCccchh------------hcccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHH
Q 014265 177 ARRSTLPTGERAPPELVH------------LLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAV 243 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~y~~ 243 (427)
+..++.+... ...+.+ .+ +..... ++++ ++.... ....+...+.+++.
T Consensus 214 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~ 274 (485)
T TIGR00711 214 --------GWFDSNEILILSITGLVAIIAFVVWELT---DD---NPLVDL-RLFKYRNFTIG----CVYMSLLGLGLYGS 274 (485)
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHHHc---CC---CCccCH-HHHcCCChHHH----HHHHHHHHHHHHHH
Confidence 0000000000 000000 00 001111 2333 222222 11222233344444
Q ss_pred HHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-h--
Q 014265 244 VLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-Y-- 320 (427)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~-~-- 320 (427)
..+.|.+.... .+.+............++.+++..+++++.||+|||+.+..+....+.....+.. .
T Consensus 275 ~~~~p~~~~~~----------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 344 (485)
T TIGR00711 275 FYLLPLYLQQV----------LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP 344 (485)
T ss_pred HHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence 44444433210 0111111222334455667788889999999999999887776555444443331 1
Q ss_pred chhhH-HHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 321 QSNIL-TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 321 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
..... ......+..++....+........|..|++.|+++.|+.+.+..+|+.+++.+.+.+.+.
T Consensus 345 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 345 DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111122222222223334556667889999999999999999999999999888877653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-19 Score=177.55 Aligned_cols=323 Identities=14% Similarity=0.097 Sum_probs=185.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+..+.+++.+.+++++++.+++++|+++|++.|.. +....++.|+.|+++|++..+.......+|..+
T Consensus 70 d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 149 (471)
T PRK10504 70 DRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLL 149 (471)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999876 455677889999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHH-HhhcccCchhHHhhcCchHHHHHHHHHHh------hhcCCCCCCccccc
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIA------QVNKTKLPNGKLVA 177 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~-~~~~lpESP~~L~~~gr~~ea~~~l~~~~------~~~~~~~~~~~~~~ 177 (427)
++.++..+....+||+.|.+......+..+ .....||++. .+.|.+.+.....-.. ..++.+.. ..
T Consensus 150 g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 222 (471)
T PRK10504 150 GPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGL-GL--- 222 (471)
T ss_pred hhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcC-Cc---
Confidence 988887777778999999887654444332 3334555442 1223232211111000 00000000 00
Q ss_pred ccccCCCCCCCCccchh------------hcccCCCCCccCCCchhhHHHHhcCcchhhHHHH-HHHHHHHHHHHHHHHH
Q 014265 178 RRSTLPTGERAPPELVH------------LLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTIL-LWLLLFGNSFAYYAVV 244 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~y~~~ 244 (427)
....... ..++. +.++ ...+. .+++++..+..+. ....+++... ..
T Consensus 223 ----------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~----~~ 281 (471)
T PRK10504 223 ----------SPLAIAGLVAVGVVALLLYLLHAR---NNNR---ALFSL-KLFRTRTFSLGLAGSFAGRIGSGM----LP 281 (471)
T ss_pred ----------chHHHHHHHHHHHHHHHHHHHHHh---cCCC---CccCH-HHhcccchHHHHHHHHHHHHHHHH----HH
Confidence 0000000 00000 0000 00111 2343333222222 1222222211 12
Q ss_pred HHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc-hh
Q 014265 245 LLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-SN 323 (427)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~-~~ 323 (427)
.+.|.+.+.. .+.+............+...++..+.+.+.||+|||+.+..+.....+....+.... ..
T Consensus 282 ~~~~~~~~~~----------~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (471)
T PRK10504 282 FMTPVFLQIG----------LGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG 351 (471)
T ss_pred HHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc
Confidence 2223222110 001111111222333344455557789999999999998776665444433333221 11
Q ss_pred h-H-HHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhc
Q 014265 324 I-L-TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC 386 (427)
Q Consensus 324 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~ 386 (427)
+ . ..........+....++.......+..|.+.|++++|+.++..++|+.++|.+.+.+++..
T Consensus 352 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 352 WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1 1111111112222334566778889999999999999999999999999999888776653
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-19 Score=176.99 Aligned_cols=319 Identities=17% Similarity=0.126 Sum_probs=193.9
Q ss_pred hhhhc-----cchhH-HHHHHHHHHHHHHHhhcc---chHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHH
Q 014265 24 HLWQN-----LVRMG-FLGEALVTAGAGLLSSFS---PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI 93 (427)
Q Consensus 24 ~~~~~-----GRk~~-~~~~~~~~~~~~~~~~~a---~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~ 93 (427)
-.||+ |||+. +..+.+..+++....++. +++..+.+.|++.|++.+.. ++..++..|+.|+++||+..++
T Consensus 68 l~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i 147 (491)
T PRK11010 68 LMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAI 147 (491)
T ss_pred HHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHH
Confidence 34688 99986 556777777777777665 46788999999999987754 4567888999999999999999
Q ss_pred HHHHHHHhHhHHHHHHHHhcC-CCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCC
Q 014265 94 FSSFWTIGSVSEAIGAWIIMP-RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPN 172 (427)
Q Consensus 94 ~~~~~~iG~i~~~~~~~~~~~-~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~ 172 (427)
...++.+|.++++.+...+.. ..|||..|++.++..++..+..+++||+|+.- +.++.. ++
T Consensus 148 ~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~----~~~~~~---~~----------- 209 (491)
T PRK11010 148 SVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI----PVPKTL---EQ----------- 209 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc----ccccch---hh-----------
Confidence 999999999998888777766 46999999998877776665555678875310 000000 00
Q ss_pred cccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Q 014265 173 GKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL-ISELS 251 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~l~ 251 (427)
.....++++++++......+.... .....+....+ .+.+.
T Consensus 210 ------------------------------------~~~~~l~~~~~~~~~~~~ll~~~l---~~~~~~~~~~~~~~~l~ 250 (491)
T PRK11010 210 ------------------------------------AVVAPLRDFFGRNNAWLILLLIVL---YKLGDAFAMSLTTTFLI 250 (491)
T ss_pred ------------------------------------hHHHHHHHHHcCcCHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 000123334433222212111111 11222222222 22221
Q ss_pred cccccCCCCCccCCCCCChhHHHH-HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH---HHhhchhhHHH
Q 014265 252 SLDTRCRSPLMFSHHPQDANLYID-EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP---LVTYQSNILTT 327 (427)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 327 (427)
... +.+....... .....++.++|.++++.++||+|||+.+..+.....+..+. +....++....
T Consensus 251 ~~~-----------G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l 319 (491)
T PRK11010 251 RGV-----------GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSM 319 (491)
T ss_pred Hhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 100 1111111111 12334567788999999999999988766544332222211 11211222111
Q ss_pred H-HHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 014265 328 G-LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 328 ~-~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 406 (427)
. ..+...++.....+..+.+..++.|++.+++..|+.+....+|+.+++.+.+.+.+..+....+.+.+++.+.+.+..
T Consensus 320 ~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~ 399 (491)
T PRK11010 320 GAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLL 399 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 1 122211122223355678888999999999999999999999988888888888887665455666666667776666
Q ss_pred hhcc
Q 014265 407 MLIP 410 (427)
Q Consensus 407 ~~l~ 410 (427)
..++
T Consensus 400 ~~~~ 403 (491)
T PRK11010 400 LVCR 403 (491)
T ss_pred HHHH
Confidence 6554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.3e-19 Score=173.28 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=101.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.++.+.++.+++.+++++++|++.+++.|+++|++.|.. +....++.|+.|+++|+++.+......++|.++
T Consensus 80 Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~i 159 (394)
T PRK10213 80 QATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVI 159 (394)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999876 455677889999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCch
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESP 143 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP 143 (427)
++.++..+....+||+.|++.++.+++..+. ...+||+|
T Consensus 160 g~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 160 AAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 9999888878889999999877665544333 33466654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=171.63 Aligned_cols=307 Identities=11% Similarity=0.062 Sum_probs=181.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+++..+.++++++.+++++++|++++++.|++.|++.|... ....++.|+.|+++|++.+++......+|..+
T Consensus 63 dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 142 (382)
T PRK10091 63 SRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLL 142 (382)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999998764 44566789999999999999999999999988
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHH-HhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~-~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.++..+....+||+.|.+.++..++..+ .++++||.++ +.+. +.+
T Consensus 143 g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~-~~~--------------------------- 190 (382)
T PRK10091 143 GIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKG-GLR--------------------------- 190 (382)
T ss_pred hccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----cccc-CHH---------------------------
Confidence 888877776678999999988876555433 3445777542 0000 000
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccccCCCCCc
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL-ISELSSLDTRCRSPLM 262 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~l~~~~~~~~~~~~ 262 (427)
..++.+.+++.+ ......+......+....+ .+.+....
T Consensus 191 ----------------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 230 (382)
T PRK10091 191 ----------------------------EQFHFLRSPAPW----LIFAATMFGNAGVFAWFSYIKPYMMFIS-------- 230 (382)
T ss_pred ----------------------------HHHHHhcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 000111111111 1111111111111111111 12221100
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHhhhh
Q 014265 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
+.+.........+.++..+++.++.+++.||+|||+.+..+..+..+..+.+.. ..+.+......+.......+..
T Consensus 231 ---g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 307 (382)
T PRK10091 231 ---GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALS 307 (382)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 111111222234455677888899999999999999887766544433322222 2222222222222222222222
Q ss_pred Hh-HHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhc
Q 014265 342 TV-SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 342 ~~-~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
.. ......+.+|.+.++.+ ..+....+|+.++|.+.+.+.+.. +....+.+.+..+++...+...+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 308 APLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 22 22344555666665554 446677899999999999888753 33344555554544444444333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-19 Score=174.56 Aligned_cols=315 Identities=14% Similarity=0.097 Sum_probs=190.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHHHHHHhHhHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~ 105 (427)
||+|||+.+..+.++..++.++..+++|++.+++.|++.|++.+..+....++.|+.|+++|+++.++......+|.+++
T Consensus 79 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (408)
T PRK09874 79 DRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLG 158 (408)
T ss_pred hhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999855444556677899999999999999999999999988
Q ss_pred HHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCCC
Q 014265 106 AIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 106 ~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
+.++..+....+||..+.+.++..++..+. ...+||.++-. + +.++ +..++
T Consensus 159 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~--~~~~~----------------------- 210 (408)
T PRK09874 159 PLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV--S-KKEM--LHMRE----------------------- 210 (408)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc--c-chhh--hHHHH-----------------------
Confidence 888777766789999998887766554433 33455543210 0 0000 00000
Q ss_pred CCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccCCCCCcc
Q 014265 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISE-LSSLDTRCRSPLMF 263 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~-l~~~~~~~~~~~~~ 263 (427)
....+.+++..+......... .........+.+. ......
T Consensus 211 ----------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------- 251 (408)
T PRK09874 211 ----------------------------VVTSLKNPKLVLSLFVTTLII---QVATGSIAPILTLYVRELAG-------- 251 (408)
T ss_pred ----------------------------HHHhCcCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc--------
Confidence 000111122211111111110 1111111111111 111000
Q ss_pred CCCCCChhH--HHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhh
Q 014265 264 SHHPQDANL--YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 264 ~~~~~~~~~--~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
....... .....+.++...++....+.+.||+|||+.+..+.....+..+......+.+...+......++.....
T Consensus 252 --~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 329 (408)
T PRK09874 252 --NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALL 329 (408)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhH
Confidence 0011110 111122234445566677899999999998877666554444333332322222222222222222233
Q ss_pred HhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014265 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
+....+..+..|.+.|++..|+.+.+..+|..++|.+.+.+.+..+....+.+.+++.+++.+..++.
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 330 PAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 44455667888999999999999999999999999999988776665566777777776666655543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-18 Score=170.30 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=100.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.++..++.+...+++|+..+++.|+++|++.|... ....++.|+.|+++|++..+..+....+|.++
T Consensus 63 Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~ 142 (392)
T PRK10473 63 DRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVL 142 (392)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999988764 45678889999999999999999999999888
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCch
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESP 143 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP 143 (427)
++.++..+....+||..+++.++..++..+. ...+||++
T Consensus 143 ~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 143 APVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8888777666789999998887766554433 44567764
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-18 Score=168.20 Aligned_cols=284 Identities=15% Similarity=0.122 Sum_probs=173.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.++..++.+..+++++++.+++.|++.|++.+.. +....++.|+.|+++|++..++.+....+|..+
T Consensus 65 d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 144 (385)
T TIGR00710 65 DRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAV 144 (385)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999876 456778899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.++..+....+||..+.+.++..++.... .+..||+++.. .+ ++.++
T Consensus 145 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~-------------------------- 194 (385)
T TIGR00710 145 APLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE---AR-IQIST-------------------------- 194 (385)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---cc-CCHHH--------------------------
Confidence 8888877777789999998877665554433 34567654310 00 00000
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCc
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS-KLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
....+++++++ +.+...+.. ......++....+.|......
T Consensus 195 --------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------- 236 (385)
T TIGR00710 195 --------------------------YFETFLLLLKSKMFWGYALIY----GASFGGFFAFFSGAPFVYIDI-------- 236 (385)
T ss_pred --------------------------HHHHHHHHHcCchhHHHHHHH----HHHHHHHHHHHHcChHHHHHH--------
Confidence 00112222222 222111111 111222222222223221100
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh---hc-hhhHHHHH-HHHHHHHH
Q 014265 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQ-SNILTTGL-LFGARMCV 337 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~-~~~~~~~~ 337 (427)
.+.+............+..+++.++.+++.||+|||+.+..+.....+....... .. +....... .....++.
T Consensus 237 --~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (385)
T TIGR00710 237 --MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGN 314 (385)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 0011111122233445667788889999999999999876655443333222221 11 11111111 11122223
Q ss_pred hhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHH
Q 014265 338 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 380 (427)
Q Consensus 338 ~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~ 380 (427)
.........+..|.+| +.|+++.++.+.....++.+.+.+.+
T Consensus 315 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 315 SMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566778889988 57999999999888764444444444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=171.58 Aligned_cols=314 Identities=11% Similarity=0.112 Sum_probs=175.5
Q ss_pred hhhccchhHH-HHHHHHHHHHHHHhhccchHHHHHHHHH-HhhhccccchhhhhhhhhccCCCCc--hhHHHHHHHHHHH
Q 014265 25 LWQNLVRMGF-LGEALVTAGAGLLSSFSPNYITLITLRC-LVGVGLGSGHVFLSWFLEFVPPSNR--GMWMVIFSSFWTI 100 (427)
Q Consensus 25 ~~~~GRk~~~-~~~~~~~~~~~~~~~~a~~~~~l~v~R~-l~Gi~~G~~~~~~~~~~E~~p~~~R--g~~~~~~~~~~~i 100 (427)
.||+|||+.+ ..+.+..+++..+.++++++.++++.+. +.|.+....+....+..|+.|++.| +.+.+..+...++
T Consensus 75 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (393)
T PRK15011 75 SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSL 154 (393)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 3799999875 4556666677778889999998766554 4555443334555666788787766 4556788888899
Q ss_pred hHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccccc
Q 014265 101 GSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179 (427)
Q Consensus 101 G~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~ 179 (427)
|.++++.++..+....|||..|++.++..++..+. +.++||+|+- + + ++. ++
T Consensus 155 g~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~------------~~---------- 207 (393)
T PRK15011 155 AWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---L-P-LAT------------GT---------- 207 (393)
T ss_pred HHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---C-c-ccc------------cc----------
Confidence 99999988888777789999999887766554433 4457776520 0 0 000 00
Q ss_pred ccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 014265 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
.+. .++. .++.+.........+ ..++....+.|......
T Consensus 208 ---~~~------------------~~~~-----------~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~----- 246 (393)
T PRK15011 208 ---LEA------------------PRRN-----------RRDTLLLFVICTLMW----GTNSLYIINMPLFIINE----- 246 (393)
T ss_pred ---ccc------------------cccc-----------cccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-----
Confidence 000 0000 000011111111111 11222222333222100
Q ss_pred CCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhh
Q 014265 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG 339 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (427)
.+.+.........+.....+++.++.+.++||+|||+.+..+...............+.+.......+..++...
T Consensus 247 -----~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 247 -----LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI 321 (393)
T ss_pred -----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 001111111112223345566778899999999999877655444333322222222222222211211121122
Q ss_pred hhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
..+....+..|.+|++ |+++.++.+...++|+.++|.+.+.+.+..+....+.+.+++.+++.+..++. |||
T Consensus 322 ~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~ 393 (393)
T PRK15011 322 LGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI-KDV 393 (393)
T ss_pred HHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence 2234456778999976 99999999999999999999999988776544444455555555555554444 454
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=177.50 Aligned_cols=288 Identities=24% Similarity=0.305 Sum_probs=180.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.++.+++.++..+++|++.++++|++.|++.+.. +....++.|+.|+++|++..+..+....+|.++
T Consensus 57 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 136 (352)
T PF07690_consen 57 DRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSIL 136 (352)
T ss_dssp HHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhc
Confidence 5999999999999999999777777788889999999999998776 456788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.++..+....+||+.+++.++..++..+. ..+++|.|+.-..+.+.++.
T Consensus 137 g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------------------------- 188 (352)
T PF07690_consen 137 GPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE---------------------------- 188 (352)
T ss_dssp HHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT----------------------------
T ss_pred ccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc----------------------------
Confidence 9999888777789999999988887776543 34555444311000000000
Q ss_pred CCCCCCccchhhcccCCCCCccCCCchhhH-HHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCCCCC
Q 014265 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSL-FLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL-SSLDTRCRSPL 261 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l-~~~~~~~~~~~ 261 (427)
+ + +++ .+.. ++.+++++... ......+...+.++....+.|.+ ....
T Consensus 189 ---~------~--------~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~------- 237 (352)
T PF07690_consen 189 ---S------K--------KPK----PLKPGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEVL------- 237 (352)
T ss_dssp -------------------HHH----CCCH-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHHH-------
T ss_pred ---c------c--------ccc----ccccccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhcc-------
Confidence 0 0 000 0001 22223222111 12222222333444444455543 1110
Q ss_pred ccCCCCC-ChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh---hchhhHHHHHHHHHHHHH
Q 014265 262 MFSHHPQ-DANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQSNILTTGLLFGARMCV 337 (427)
Q Consensus 262 ~~~~~~~-~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 337 (427)
+.+ .........+..+...++.++.+.+.||+|+|+..........+....+.. .++..+.........++.
T Consensus 238 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 313 (352)
T PF07690_consen 238 ----GFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGF 313 (352)
T ss_dssp ----HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 011 111122234455566667888999999999877665544433333322221 112222222233333333
Q ss_pred hhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhH
Q 014265 338 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 376 (427)
Q Consensus 338 ~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p 376 (427)
.........+..|.+|++.|+++.|+.+....+++.++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 314 GIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 445677899999999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=170.53 Aligned_cols=314 Identities=11% Similarity=-0.036 Sum_probs=181.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||++++++.++..++++.++++++. ++.|+++|++.|.. ++..+++.|++|+++|+++.++.+....+|.++
T Consensus 63 Dr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~ 139 (393)
T PRK11195 63 DSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILL 139 (393)
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999888877664 78999999999876 556788999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.++..+.. +.|+..+.+.+...++..+..+.+||+|+... ++.++..+.+++.
T Consensus 140 Gp~lgG~l~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~---------------------- 194 (393)
T PRK11195 140 GTVLGGALAD-PHAEAALAVCALIYLLAALFNLFIPRLGARRP--GQSWNPIALLRDF---------------------- 194 (393)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCccccc--ccCCCHHHHHHHH----------------------
Confidence 9888777654 34887777665554444455567888774311 1100000000000
Q ss_pred CCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 014265 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL-WLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
...++.+++.+..+..+.. ...+.......|....|.++...
T Consensus 195 --------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg----------- 237 (393)
T PRK11195 195 --------------------------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALG----------- 237 (393)
T ss_pred --------------------------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence 0012233433333322222 22232222233333333333221
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHh
Q 014265 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 343 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (427)
.+...........+++.+++.++.+.+.||.++|+.+..+.... .....+....+.+......+...++.......
T Consensus 238 ---~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~ 313 (393)
T PRK11195 238 ---ITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILMG-LVVLLMALQHSLLPAYPLLILIGALGGFFVVP 313 (393)
T ss_pred ---CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence 11111222334445666777788888888888887766654332 22222222222222222222222222222233
Q ss_pred HHHhcccccccch-hhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014265 344 SLIYAAEIYPTSV-RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 344 ~~~~~~ElfPt~~-R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
......|.-|++. |+++.++.+...+++..++..+...+ ...+-...+.+.+...+++....+.+
T Consensus 314 ~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 314 MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555667766665 79999999999999998888877755 33343333333333333443333333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=170.36 Aligned_cols=306 Identities=13% Similarity=0.088 Sum_probs=188.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc-----chHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFS-----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a-----~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
||+|.|+.+.++.+++++.++..+++ +|+.++++.|++.|++ |+. ++....+.++.|+++||++.++.....+
T Consensus 95 Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~ 173 (462)
T PRK15034 95 PIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGN 173 (462)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHh
Confidence 69999999999999999999999987 8999999999999998 554 4556778999999999999999976666
Q ss_pred HhHhHHHHHHHH-----hcC-------------CCCchHHHHhhhHHHHHHHHHh-hcccCchhHHhhcCchHHHHHHHH
Q 014265 100 IGSVSEAIGAWI-----IMP-------------RLDWRWLLGLSSIPSFILLAFL-GFQPESPRYLCLKGRTAEAHRALE 160 (427)
Q Consensus 100 iG~i~~~~~~~~-----~~~-------------~~~WR~~~~~~~i~~li~~~~~-~~lpESP~~L~~~gr~~ea~~~l~ 160 (427)
+|..+...+... +.. ..+||....+-.++.++..+.. +.+++-|. .|.+
T Consensus 174 ~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~--------- 241 (462)
T PRK15034 174 LGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRAS--------- 241 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccC---------
Confidence 666554443322 111 2347777666555544443333 23332221 0000
Q ss_pred HHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHH
Q 014265 161 KIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAY 240 (427)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (427)
.......++. ++++++..++++..-+|
T Consensus 242 --------------------------------------------------~~~~~~vlk~---~~~Wllslly~~tFG~f 268 (462)
T PRK15034 242 --------------------------------------------------IADQLPVLQR---LHLWLLSLLYLATFGSF 268 (462)
T ss_pred --------------------------------------------------HHHHHHHhCC---CchhHHHHHHHHHHHHH
Confidence 0011111221 12444555555555555
Q ss_pred HHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH--
Q 014265 241 YAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV-- 318 (427)
Q Consensus 241 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~-- 318 (427)
.++..+.|.+.... .+........++..+...++..++|+++||+|||+.+.+++....++.....
T Consensus 269 vg~s~~lp~~~~~~------------~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~ 336 (462)
T PRK15034 269 IGFSAGFAMLAKTQ------------FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLT 336 (462)
T ss_pred HHHHHHHHHHHHHH------------cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 55555566554211 0111222223444455666677899999999999988877765544433221
Q ss_pred hhch---h-hHHHHHHHHHHHHHhhhhHhHHHhccccccc---------------------chhhHHHHHHHHhhhHhHh
Q 014265 319 TYQS---N-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPT---------------------SVRSTGAGAANAMGRIGGM 373 (427)
Q Consensus 319 ~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt---------------------~~R~~~~g~~~~~~~~~~~ 373 (427)
...+ . .......+...++...+.+..+..++..||+ +.-+...|+..+.+.+|++
T Consensus 337 lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf 416 (462)
T PRK15034 337 LPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGF 416 (462)
T ss_pred hccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccc
Confidence 1111 1 1111212222222333556788899999985 1466788999999999999
Q ss_pred hhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhhc
Q 014265 374 VCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 374 i~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~l 409 (427)
+-|...+...+..+ ....+..+.+..+++.++.+..
T Consensus 417 ~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 417 FIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887665544 3455666666666665555443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-18 Score=167.55 Aligned_cols=315 Identities=12% Similarity=0.045 Sum_probs=180.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHh---hc-cchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLS---SF-SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~---~~-a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
||+|||+.+..+..+++++.++. ++ .+|+..+++.|++.|++.+.. +....++.|+.|+++||+++++.+...++
T Consensus 73 dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 152 (402)
T TIGR00897 73 EIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSI 152 (402)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 69999999999999998887654 23 368889999999999998765 34566778999999999999999999999
Q ss_pred hH-hHHHHHHHHhcCCCCchHHHHhhhHHHHHHH-HHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccc
Q 014265 101 GS-VSEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 101 G~-i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~-~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
|. +.++.++..+.+..||+..++......++.. +..+..+|.|+ .++.+ ++
T Consensus 153 g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-----------~~--------- 205 (402)
T TIGR00897 153 GIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT-------PQHMQ-----------TR--------- 205 (402)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC-------ccccc-----------CC---------
Confidence 96 5677666565566775544333222111111 11222222110 00000 00
Q ss_pred cccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 014265 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
.+. .+....++.+++.+ +.+......+.+...+++...+.|.+....
T Consensus 206 -----------~~~---------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---- 252 (402)
T TIGR00897 206 -----------EKF---------------SELGKAATILFTNP---NVLLGGMVRIINTIGLFGFAVFLPMFVAEL---- 252 (402)
T ss_pred -----------cch---------------hhHHHHHHHHHcCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 000 00001222333322 222233333445556666666666543211
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHH-HHHHHHHHHHHHHH-hh----chhhHHHHHHHH
Q 014265 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT-IMFTLSCLFLLPLV-TY----QSNILTTGLLFG 332 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~-~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~ 332 (427)
+.+.........+..+...++.++.+++.||+|||+... .+.....+....+. .. ++.+........
T Consensus 253 -------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 325 (402)
T TIGR00897 253 -------GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIA 325 (402)
T ss_pred -------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence 011111112223345667888899999999999988653 22222222111111 11 111111111222
Q ss_pred HHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014265 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
..++.. ..........|..| +.|+++.|+.+...+++++++|.+.+.+.+..+....+.+.+++.+++.+...++
T Consensus 326 ~G~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 326 LGIFLA-GYVPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHH-HHHHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 222222 22333445567766 5799999999999999999999999988887665566677776766666555543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-18 Score=173.69 Aligned_cols=333 Identities=14% Similarity=0.087 Sum_probs=187.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhh-ccCCCCchhHHHHHHHHHHHhHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLE-FVPPSNRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E-~~p~~~Rg~~~~~~~~~~~iG~i 103 (427)
||+|||+.+..+.+++.++++.+++++|+++++++|+++|+|.|+.. .....+.+ +.|+++|+++.++....+.+|..
T Consensus 66 D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~ 145 (495)
T PRK14995 66 DRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAA 145 (495)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999988753 34445544 45789999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHhhhHHHHHHH-HHhhcccCchhHHhhcCchHHHHHHHH------HHhhh-cCCCCCCccc
Q 014265 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALE------KIAQV-NKTKLPNGKL 175 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~li~~-~~~~~lpESP~~L~~~gr~~ea~~~l~------~~~~~-~~~~~~~~~~ 175 (427)
+++.++..+.+..+||+.|++.....++.. +..+.+||+|.- .+++.+.....+. ..... +..+......
T Consensus 146 ~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 223 (495)
T PRK14995 146 FGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLW 223 (495)
T ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchH
Confidence 999999888888999999998765444433 344567887641 1111111110000 00000 0000000000
Q ss_pred ccccccCCCCCCCCccc-hhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014265 176 VARRSTLPTGERAPPEL-VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD 254 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 254 (427)
......-... .-. .....+. + .+....+ .++++.+...... ...+.....+++...+.|...+..
T Consensus 224 ~~~~~~~~~~----~~l~~f~~~e~---~---~~~p~~~-~~lf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lq~v 289 (495)
T PRK14995 224 VTSLTLLTGA----LLLGLFIRTQL---A---ASRPMID-MRLFTHRIILSGV---VMAMTAMITLVGFELLMAQELQFV 289 (495)
T ss_pred HHHHHHHHHH----HHHHHHHHHHh---c---CCCCCcC-HHHhCCcccHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 000 0000000 0 0000111 2344433222211 122222333444444444322110
Q ss_pred ccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh--ch-hhHHHHHHH
Q 014265 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--QS-NILTTGLLF 331 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~ 331 (427)
. +.+............+...++..+.+.+.||+|||+.+..+.....+....+... .+ .+.......
T Consensus 290 --------~--g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (495)
T PRK14995 290 --------H--GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMA 359 (495)
T ss_pred --------c--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 0 0111111222333445567778889999999999998877665554433333221 11 222122222
Q ss_pred HHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHh
Q 014265 332 GARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~ 384 (427)
+..+..............+..|++.|+.+.++.+.+..+|+.+++.+.+.+.+
T Consensus 360 l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 360 LLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233334566677788999999999999999999999999887776654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-18 Score=166.88 Aligned_cols=119 Identities=14% Similarity=0.040 Sum_probs=98.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.++.+..+..++.+...+++++.++++.|+++|++.+.. +...+++.|+.|+++|++..++......+|..+
T Consensus 73 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (406)
T PRK15402 73 DRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLL 152 (406)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998865 445677789999999999888888777788888
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCchh
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPR 144 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~ 144 (427)
++.++..+....+||+.+++.++..++..+. ++.+||+++
T Consensus 153 g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 153 GPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 8877766666789999998877776654443 345677653
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-18 Score=166.33 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=101.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.++.+++.+...+++|+..++++|++.|++.+.. +...+++.|+.|+++|++..++.+....+|..+
T Consensus 51 d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 130 (377)
T PRK11102 51 DSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLL 130 (377)
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999998875 455678899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHH-HHhhcccCch
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESP 143 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~-~~~~~lpESP 143 (427)
++.++..+....+||+.+.+.++..++.. +..+++||++
T Consensus 131 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 131 APIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 98887777667899999988777766544 3345667754
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.6e-18 Score=165.70 Aligned_cols=285 Identities=11% Similarity=0.098 Sum_probs=172.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+..+..++.++.++++|+..+++.|+++|++.+... ....++.|+.|+++|++..+.......+|..+
T Consensus 66 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (401)
T PRK11043 66 DRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPAL 145 (401)
T ss_pred hhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999987653 34567789999999988888887788888888
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.++..+....+||..+++.++..++..+..++++|+++- + +.++.+
T Consensus 146 g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~---------------------------- 193 (401)
T PRK11043 146 APLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKA---R-KQSQDA---------------------------- 193 (401)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc---c-ccchHH----------------------------
Confidence 88777777677899999988877776655555555555420 0 000000
Q ss_pred CCCCCccchhhcccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 014265 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
..++++++ ++.+...+ .+......++....+.|.+....
T Consensus 194 ---------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~~~~~~--------- 233 (401)
T PRK11043 194 ---------------------------LTFKQLLKSKTYLGNVL----IFAACSAAFFAWLTGSPFILEQM--------- 233 (401)
T ss_pred ---------------------------HHHHHHHcChhHHHHHH----HHHHHHHHHHHHHHHhHHHHHHc---------
Confidence 01122222 22211111 11111222222223334332110
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH---HHhh-chhhHHHHH-HHHHHHHHh
Q 014265 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP---LVTY-QSNILTTGL-LFGARMCVM 338 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~-~~~~~~~~~ 338 (427)
+.+............+...+|.++.+.+.||+|||+..........+.... .... .+....... .........
T Consensus 234 --g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (401)
T PRK11043 234 --GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANG 311 (401)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 111111112222334455677778889999999998765443332222221 1111 112111111 111222222
Q ss_pred hhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 339 GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 339 ~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
..++.......|.+|. .|+++.|+.+.++..++..++.+.+.+.+.
T Consensus 312 ~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 312 AIYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3344455566677775 799999999999988888888888877653
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-18 Score=163.41 Aligned_cols=276 Identities=13% Similarity=0.077 Sum_probs=165.3
Q ss_pred cchhHH-HHHHHHHHHHHHHhhccc---hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHh
Q 014265 29 LVRMGF-LGEALVTAGAGLLSSFSP---NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 29 GRk~~~-~~~~~~~~~~~~~~~~a~---~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i 103 (427)
||||.+ +.+.++.++..++.++.+ +...+....++.|.+.+.. ++..+++.|++|+|+|+++.++.+.++.+|.+
T Consensus 54 Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~ 133 (356)
T TIGR00901 54 GRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGML 133 (356)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHH
Confidence 999974 567777777777777774 4555677777777665544 45577889999999999999999999999999
Q ss_pred HHHHHHHHhcCCCC--------chHHHHhhhHHHHHHHHHhh-cccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcc
Q 014265 104 SEAIGAWIIMPRLD--------WRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGK 174 (427)
Q Consensus 104 ~~~~~~~~~~~~~~--------WR~~~~~~~i~~li~~~~~~-~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~ 174 (427)
+++.++..+.+..+ ||..|++.++..++..+..+ ..||+++. +.+.++.++.
T Consensus 134 ~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~~---------------- 194 (356)
T TIGR00901 134 LSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQA---------------- 194 (356)
T ss_pred HHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHHH----------------
Confidence 98888776665566 99999998887766555544 35664321 0000000000
Q ss_pred cccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014265 175 LVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 254 (427)
....++++++++..++.+......+.....++....+.+.+....
T Consensus 195 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (356)
T TIGR00901 195 -----------------------------------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM 239 (356)
T ss_pred -----------------------------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 001222333333222233333333334455555444444332111
Q ss_pred ccCCCCCccCCCCCChhHH-HHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh--c--------hh
Q 014265 255 TRCRSPLMFSHHPQDANLY-IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--Q--------SN 323 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~--~--------~~ 323 (427)
+.+..... .......+..+++.++++++.||+|||+.+..+.++..+........ . +.
T Consensus 240 -----------g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (356)
T TIGR00901 240 -----------GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH 308 (356)
T ss_pred -----------CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 11111111 11222234566788899999999999888776655544333322221 1 11
Q ss_pred -hHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhh
Q 014265 324 -ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR 369 (427)
Q Consensus 324 -~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~ 369 (427)
+......++..++....+.....+..|.+|++.|++..|+.+...+
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2111222222333344567789999999999999999999887654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=173.71 Aligned_cols=328 Identities=11% Similarity=0.026 Sum_probs=181.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHH-HHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLIT-LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v-~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i 103 (427)
||+|||+.++.+.++.+++.+++++++|++++++ .|++.|++.|.. +....++.|+.| ++|+++.++.+....+|..
T Consensus 79 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~ 157 (455)
T TIGR00892 79 NRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLS 157 (455)
T ss_pred HHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHH
Confidence 5999999999999999999999999999998875 579999999864 444566678886 7899999999999999998
Q ss_pred HHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhh-cccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccC
Q 014265 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 182 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~-~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (427)
+++.+...+....|||+.|++.++..++..+..+ ..|+.+.. .+.+.++ + .+.+ ++
T Consensus 158 ~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~---------~~~~-~~---------- 214 (455)
T TIGR00892 158 TLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS-K---------EGLP-PD---------- 214 (455)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc-c---------ccCC-CC----------
Confidence 8888777666678999999998877665443332 23322210 0000000 0 0000 00
Q ss_pred CCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCc
Q 014265 183 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
... ++..... ..++.. ....+ .+++.+. .+......+...+.++....+.+.+....
T Consensus 215 ~~~----~~~~~~~------~~~~~~-~~~~~-~~~~~~~---~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-------- 271 (455)
T TIGR00892 215 GST----KKLSKKS------TAEKIN-RFLDF-SLFTHRG---FLVYLSGNVIMFLGFFAPIIFLVPYAKDK-------- 271 (455)
T ss_pred Ccc----ccccccc------hhhhhh-hhcch-HHhcCch---HHHHHHHHHHHHHHccchHHHHHHHHHHc--------
Confidence 000 0000000 000000 00011 1232221 11121222222333344333433332110
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhh--hChhHHHHH--HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHh
Q 014265 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT--AGRKLSITI--MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVM 338 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~--~GRr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (427)
+.+.........+.+++.+++..+.+.+.|| .++|+.... +.+..++..+......+.+...+......++..
T Consensus 272 ---g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g 348 (455)
T TIGR00892 272 ---GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFG 348 (455)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc
Confidence 1111111222334456666677778899997 334433322 222222222222222222221222222222223
Q ss_pred hhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q 014265 339 GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSI 403 (427)
Q Consensus 339 ~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~ 403 (427)
......+.+..|.+|++.|+++.|+.+....+|++++|.+.+.+.+..+ ....+.+.+++.+++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 349 SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG 414 (455)
T ss_pred hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence 3345667888999999999999999999999999999999987776543 2334444444444443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-19 Score=170.39 Aligned_cols=288 Identities=16% Similarity=0.140 Sum_probs=164.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSP-NYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~-~~~~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+.++.++..++.++.++++ |+.+++++|+++|++.+......+++.|+.|+++|++..++......+|..+
T Consensus 62 dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 141 (366)
T TIGR00886 62 DKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGV 141 (366)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHH
Confidence 599999999999999999999999999 9999999999999985544455677889999999999999988777777776
Q ss_pred HHHHHHHhcC----------CCCchHHH-HhhhHH-HHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCC
Q 014265 105 EAIGAWIIMP----------RLDWRWLL-GLSSIP-SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPN 172 (427)
Q Consensus 105 ~~~~~~~~~~----------~~~WR~~~-~~~~i~-~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~ 172 (427)
++.++..+.. ..+||+.+ ...++. .++..+.....+|+|+- +.++.++ +.++
T Consensus 142 ~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------~~~~--- 205 (366)
T TIGR00886 142 AQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG-----KPATGKL--------SFKG--- 205 (366)
T ss_pred HHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcc-----cccchhc--------cccc---
Confidence 6655433321 34899998 443433 33334444556777641 1111000 0000
Q ss_pred cccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014265 173 GKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSS 252 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~ 252 (427)
+.... + + +......+.++.+. .+......+.....+++...+.+....
T Consensus 206 ---------~~~~~----------------~-~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T TIGR00886 206 ---------ARWSV----------------G-T---GALGDQLKVFRDRH---TWILALLYSVTFGSFLGVSSIFAMFFK 253 (366)
T ss_pred ---------ccccc----------------c-c---hhHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 0 00011222332211 111222222222233333333343321
Q ss_pred ccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-hch--hhH-HHH
Q 014265 253 LDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQS--NIL-TTG 328 (427)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~-~~~--~~~-~~~ 328 (427)
.. .+.+.........+..+..+++.++.+++.||+|||+.+..+..........+.. ..+ +.. ...
T Consensus 254 ~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
T TIGR00886 254 DQ----------FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV 323 (366)
T ss_pred HH----------cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 10 0011111112233345566778888999999999987766554433333322222 121 221 122
Q ss_pred HHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhH
Q 014265 329 LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGG 372 (427)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~ 372 (427)
.......+.....+..+..++|++| +.|++.+|+.+.++++|+
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 2222222223344677888999998 699999999999998764
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-18 Score=188.14 Aligned_cols=295 Identities=13% Similarity=-0.057 Sum_probs=174.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHh---hccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLS---SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~---~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||++++++.++..++.++. .+++++++++++|+++|++.|.. ++..+++.|++|+++|++++++.+....+|
T Consensus 72 Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig 151 (1146)
T PRK08633 72 DKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVA 151 (1146)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHH
Confidence 59999999999887766555544 34578999999999999999876 456788899999999999999999999999
Q ss_pred HhHHHHHHHHhcCC---------CCchHHHHhhhH-HHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCC
Q 014265 102 SVSEAIGAWIIMPR---------LDWRWLLGLSSI-PSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLP 171 (427)
Q Consensus 102 ~i~~~~~~~~~~~~---------~~WR~~~~~~~i-~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~ 171 (427)
.+++++++.++... .+|++.+.+.++ ..++.++..+.+||+|++...+++. +. .
T Consensus 152 ~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------~-- 215 (1146)
T PRK08633 152 ILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDK-KK-------------Y-- 215 (1146)
T ss_pred HHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccc-cc-------------c--
Confidence 99998887766543 245555444333 3333444455678887642110000 00 0
Q ss_pred CcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 014265 172 NGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL-WLLLFGNSFAYYAVVLLISEL 250 (427)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~l 250 (427)
. ........++.+++.+.....++. .+.++. .+....+.+.+
T Consensus 216 ------------------~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 258 (1146)
T PRK08633 216 ------------------L---------------FPKLLWRNLKLLRSDRVLWLAIIGLSYFWFI----SQLAQANFPAY 258 (1146)
T ss_pred ------------------c---------------cHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH----HHHHHHhhHHH
Confidence 0 000001233344443332222221 111211 11111222222
Q ss_pred hcccccCCCCCccCCCCCCh-hHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 014265 251 SSLDTRCRSPLMFSHHPQDA-NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGL 329 (427)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (427)
.... .+.+.. ..........++.+++.++.+.+.||.++|..+.++.+..++..+.+....+.+...+.
T Consensus 259 ~~~~----------~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1146)
T PRK08633 259 AKEV----------LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVL 328 (1146)
T ss_pred HHHH----------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1100 001111 11222334455667788889999999998887766555444444333332222222222
Q ss_pred HHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 330 LFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
.++..++........+.+..|..|++.|+++.|+.+.+..+++++++.+...+.
T Consensus 329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 329 FFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333334566888899999999999999999999998887776665443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-17 Score=164.26 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=102.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchh-hhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.++.+.+++.++++++++++|++.++++|+++|++.|.... ...+..|+.|+++|++.+++......+|..+
T Consensus 76 dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
T PRK15403 76 DRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPII 155 (413)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999876443 4566779999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCchh
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPR 144 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~ 144 (427)
++.++..+....+||+.|++.++..++..+. .+.+||+++
T Consensus 156 g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 156 GPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9888877766789999999988877665544 446788753
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-17 Score=159.18 Aligned_cols=302 Identities=14% Similarity=0.090 Sum_probs=177.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.++..++.+..++++|++.++++|+++|++.|... +...++.+..|+++|++..+.....+.+|..+
T Consensus 66 dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 145 (381)
T PRK03633 66 KRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVL 145 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999998764 44566778899999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCCC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.+...+.....|+..+....+...+..+.....+|++. ++
T Consensus 146 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~--------------- 187 (381)
T PRK03633 146 GQLLVSKVSTELMSVLPWVTGLVLAAILPLLFTRILNQQA-----------------------EN--------------- 187 (381)
T ss_pred HHHHHhcccccccchHHHHHHHHHHHHHHHHHhcccCCCC-----------------------CC---------------
Confidence 8888766544333333332211111111111111111100 00
Q ss_pred CCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccC
Q 014265 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS 264 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 264 (427)
+ + ++ +..++++.+..+..+..... ....+.....+.|......
T Consensus 188 ~-~-----------------~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lp~~~~~~---------- 230 (381)
T PRK03633 188 H-D-----------------ST------SIWPMLKLRQARLGVNGCII---SGIVLGSLYGLMPLYLNHQ---------- 230 (381)
T ss_pred C-C-----------------CC------CHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHc----------
Confidence 0 0 00 01112221111111111111 1111112222334332110
Q ss_pred CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhH
Q 014265 265 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVS 344 (427)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (427)
+.+.........+..+..+++.+..+.+.||+|||+.+..+.....+....+. .. ... ..............++..
T Consensus 231 -g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~-~~~-~~~~~l~g~~~~~~~p~~ 306 (381)
T PRK03633 231 -GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQ-AAM-APALFILGAAGFTLYPVA 306 (381)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hh-HHH-HHHHHHHHHHHHhHHHHH
Confidence 01111111223344456677888899999999999988766555444333222 11 111 111111112222334566
Q ss_pred HHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 014265 345 LIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 345 ~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 406 (427)
..+..|..|++.++...+..+....+|+.++|.+.+.+.+..+....+.+.+.+.+++.+..
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 307 MAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 77788999998888888888888889999999999988887765566666666665554333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=165.00 Aligned_cols=329 Identities=19% Similarity=0.253 Sum_probs=209.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccch--HHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPN--YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 102 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~--~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~ 102 (427)
+|+|-|+++..+.++.++.++++-.+.+ ++.+++.|+++|++.|.. ++...+...|+|+++|+++.++...+..+|.
T Consensus 98 ~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~ 177 (466)
T KOG2532|consen 98 DKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGT 177 (466)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999876654 457899999999999986 5667788999999999999999999999999
Q ss_pred hHHHHHHHHhcCC-CCchHHHHhhhHHHHHHHHHhh-cccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccc
Q 014265 103 VSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 180 (427)
Q Consensus 103 i~~~~~~~~~~~~-~~WR~~~~~~~i~~li~~~~~~-~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~ 180 (427)
+++..++..+-.. .||+.+|++.++.+++..++++ +.-|+|+- +.+..+.| ++++++...++
T Consensus 178 v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~is~~E--l~~I~~~k~~~----------- 241 (466)
T KOG2532|consen 178 IITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPNISEKE--LKYIEKGKSEA----------- 241 (466)
T ss_pred HHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---CCCCCHHH--HHHHHhccccc-----------
Confidence 9988777666554 8999999999999888766654 45677763 22222211 12221110000
Q ss_pred cCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 014265 181 TLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~ 260 (427)
..+.+ ...+++.+++.+ ..+.+++..++...++|.+..+.|......
T Consensus 242 -----------------------~~~~~-~~vP~~~i~ts~---~vwai~~~~f~~~~~~~~l~~y~PtY~~~V------ 288 (466)
T KOG2532|consen 242 -----------------------HVKKK-PPVPYKAILTSP---PVWAIWISAFGGNWGFYLLLTYLPTYLKEV------ 288 (466)
T ss_pred -----------------------ccCCC-CCCCHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH------
Confidence 00000 113566666532 344555556667777777777767654311
Q ss_pred CccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhCh---------hHHHHHHHHHHHHHHHHHHhhc-hhh-HHHHH
Q 014265 261 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR---------KLSITIMFTLSCLFLLPLVTYQ-SNI-LTTGL 329 (427)
Q Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GR---------r~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~ 329 (427)
.+.+.........+..+...+..+++|.++||+-+ |..-.++..+.+++++.+.+.. .+. ....+
T Consensus 289 ----L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~ 364 (466)
T KOG2532|consen 289 ----LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVIL 364 (466)
T ss_pred ----hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHH
Confidence 11122222333445566677777889999998644 3333555666665555554432 222 22222
Q ss_pred HHHHHHHHhhhhHhHHHhccccc-ccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhc--chh-HHHHHHHHHHHHHHHH
Q 014265 330 LFGARMCVMGAFTVSLIYAAEIY-PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC--HQM-TAVVLLVVVIVTSILS 405 (427)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~Elf-Pt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~--~~~-~~~~~~~~~~~i~~~~ 405 (427)
+.+. .+..|. ...-.+.+-.- .++--+...|+++.++.+.++++|.+.+.+..+. ..| ..+++.+++.+++.+.
T Consensus 365 l~~~-~~~~g~-~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~ 442 (466)
T KOG2532|consen 365 LTIA-IGLSGF-NISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNII 442 (466)
T ss_pred HHHH-HHHccc-chhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchh
Confidence 2222 233333 23333333333 7888899999999999999999999998877421 122 2344555555555544
Q ss_pred Hhhc
Q 014265 406 VMLI 409 (427)
Q Consensus 406 ~~~l 409 (427)
..++
T Consensus 443 f~~f 446 (466)
T KOG2532|consen 443 FLFF 446 (466)
T ss_pred eeEe
Confidence 4443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-16 Score=154.70 Aligned_cols=314 Identities=15% Similarity=0.041 Sum_probs=174.7
Q ss_pred hhc-----cchh-HHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHH
Q 014265 26 WQN-----LVRM-GFLGEALVTAGAGLLSSFSP---NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFS 95 (427)
Q Consensus 26 ~~~-----GRk~-~~~~~~~~~~~~~~~~~~a~---~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~ 95 (427)
||+ |||| .+.++.++.+++..+.++.+ +++.+++..++.++..+.. ++..+++.|+.|+++|+++.++..
T Consensus 57 Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~ 136 (402)
T PRK11902 57 DRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKV 136 (402)
T ss_pred HcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHH
Confidence 577 8876 67777888877777777763 4677888888877665544 456788899999999999999999
Q ss_pred HHHHHhHhHHHHHHHHhcCC-CCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcc
Q 014265 96 SFWTIGSVSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGK 174 (427)
Q Consensus 96 ~~~~iG~i~~~~~~~~~~~~-~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~ 174 (427)
.++.+|.++++.+...+... .|||..|++.++..++..+..+++||+++.. ++.++..+ +
T Consensus 137 ~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~~---~------------- 197 (402)
T PRK11902 137 LGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSLGE---A------------- 197 (402)
T ss_pred HHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchhHH---H-------------
Confidence 99999999988877766654 5999999988776665555555677765421 00000000 0
Q ss_pred cccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014265 175 LVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 254 (427)
....++++++++..+..+............++.. ..+.+....
T Consensus 198 -----------------------------------~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~--~~~~l~~~~ 240 (402)
T PRK11902 198 -----------------------------------VVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSL--STTFLIRGA 240 (402)
T ss_pred -----------------------------------HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHH--HHHHHHHhc
Confidence 0012334444433333322222211111111111 112121100
Q ss_pred ccCCCCCccCCCCCChhHHHHH-HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH---Hhhchh-hHHHHH
Q 014265 255 TRCRSPLMFSHHPQDANLYIDE-FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTYQSN-ILTTGL 329 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~ 329 (427)
+.+........ .....+.+++.++++.+.||+|||+.+..+.....+..+.. ....++ +.....
T Consensus 241 -----------G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 309 (402)
T PRK11902 241 -----------GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALA 309 (402)
T ss_pred -----------CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 11111111111 12223467888999999999999987765544433222211 222222 221111
Q ss_pred HHH----HHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 014265 330 LFG----ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILS 405 (427)
Q Consensus 330 ~~~----~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 405 (427)
... ..+...........+..+.+|.+.++ ..+.+..+++.+++.+.+.+.+..+....+.+.+.+++++.++
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 310 IGIENLCGGMGTAAFVALLMALCNRSFSATQYA----LLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 111 11122233456677888888876554 3333444555444446676776666555556666666666555
Q ss_pred Hhhcc
Q 014265 406 VMLIP 410 (427)
Q Consensus 406 ~~~l~ 410 (427)
....+
T Consensus 386 ~~~~~ 390 (402)
T PRK11902 386 LWLMR 390 (402)
T ss_pred HHHHh
Confidence 54443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.5e-17 Score=158.93 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=97.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+..+..++.+...++++++.++++|+++|++.|.. +...+++.|+.|+++|++..++......+|..+
T Consensus 71 dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~i 150 (400)
T PRK11646 71 DRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVI 150 (400)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999988754 455778889999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPE 141 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpE 141 (427)
++.++..+. ..+||+.|++.++..++..+. .+.+||
T Consensus 151 g~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 151 GALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 988877766 689999999887665544322 334454
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-16 Score=155.72 Aligned_cols=298 Identities=12% Similarity=0.011 Sum_probs=172.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHh---hccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLS---SFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~---~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||+++..+..+++++.+++ ++++|+.+++++|+++|+|.|... ...+++.|+.|+++|++.++..+..+.+|
T Consensus 86 dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G 165 (438)
T PRK10133 86 KKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG 165 (438)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHH
Confidence 69999999999999999999875 578999999999999999999764 55677789877787777789999999999
Q ss_pred HhHHHHHHHHhc-CC-------------------------CCchHHHHh-hhHHHHHHHHH-hhcccCchhHHhhcCchH
Q 014265 102 SVSEAIGAWIIM-PR-------------------------LDWRWLLGL-SSIPSFILLAF-LGFQPESPRYLCLKGRTA 153 (427)
Q Consensus 102 ~i~~~~~~~~~~-~~-------------------------~~WR~~~~~-~~i~~li~~~~-~~~lpESP~~L~~~gr~~ 153 (427)
..++++++..+. .. .+||.+|+. .++..++..+. ...+||.|. + +.+
T Consensus 166 ~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~-~~~ 240 (438)
T PRK10133 166 AIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----D-NHS 240 (438)
T ss_pred HHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-ccc
Confidence 998887754322 00 256666653 33333332222 233454221 0 000
Q ss_pred HHHHHHHHHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHH
Q 014265 154 EAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLL 233 (427)
Q Consensus 154 ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (427)
+ + ++ .+....++++++.+..+...+....
T Consensus 241 ~-----------~-~~--------------------------------------~~~~~~~~~ll~~~~~~~~~l~~~~- 269 (438)
T PRK10133 241 D-----------A-KQ--------------------------------------GSFSASLSRLARIRHWRWAVLAQFC- 269 (438)
T ss_pred c-----------c-cc--------------------------------------cchhhhHHHHHhCchHHHHHHHHHH-
Confidence 0 0 00 0000112233433222222111111
Q ss_pred HHHHHHHHHHHHHHHHh-hcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHH
Q 014265 234 FGNSFAYYAVVLLISEL-SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL 312 (427)
Q Consensus 234 ~~~~~~~y~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~ 312 (427)
.....++...|.+.. .+.. .+.+............++.+.|..+++.+.||+|||+.+..+..+++.
T Consensus 270 --~~~~~~~~~~~~~~~l~~~~----------~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~ 337 (438)
T PRK10133 270 --YVGAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_pred --HHHHHHHHHHHHHHHHhhhc----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 222222222233221 1100 011111112223445566778889999999999999988776655543
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc-hhHH
Q 014265 313 FLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTA 391 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~-~~~~ 391 (427)
.+.......+. ..........++....++..+....|.+|.+ .+++.++.. ++.+++.+.|.+.+.+.+..+ ....
T Consensus 338 ~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~ 414 (438)
T PRK10133 338 LCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_pred HHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHH
Confidence 33332222221 2222233344455566778888999999875 567777775 455678888888887766554 3344
Q ss_pred HHH
Q 014265 392 VVL 394 (427)
Q Consensus 392 ~~~ 394 (427)
+++
T Consensus 415 ~~v 417 (438)
T PRK10133 415 ELI 417 (438)
T ss_pred HHH
Confidence 444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-17 Score=163.44 Aligned_cols=304 Identities=15% Similarity=0.195 Sum_probs=193.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+.-.+.+....+.+++.+++++...|+..+++.|++.|+..++. |....++.-|..+++||+.++++....++|+++
T Consensus 106 ~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ 185 (495)
T KOG2533|consen 106 DRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIF 185 (495)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHH
Confidence 5888788899999999999999999999999999999999999876 667788899999999999999999999999999
Q ss_pred HHHHHHHh------cCCCCchHHHHhhhHHHHHHHHH-hhcccCchh--HHhhcCchHHHHHHHHHHhhhcCCCCCCccc
Q 014265 105 EAIGAWII------MPRLDWRWLLGLSSIPSFILLAF-LGFQPESPR--YLCLKGRTAEAHRALEKIAQVNKTKLPNGKL 175 (427)
Q Consensus 105 ~~~~~~~~------~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~--~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~ 175 (427)
++++++.+ ....|||++|++.++..++..++ ++++|+.|. |+.++ +|-+-..+++++.++++..
T Consensus 186 ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~---~ek~~~~~~~~~~~~~~~~---- 258 (495)
T KOG2533|consen 186 GGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTD---EEKELVVERLRESPSGGIE---- 258 (495)
T ss_pred HHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccch---HHHHHHHHHHHhccCCCcc----
Confidence 99998885 34579999999999888776544 567999997 44322 1111112333222211100
Q ss_pred ccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014265 176 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDT 255 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~ 255 (427)
+ + ..+.++++.++. .+++...+.+++.....|+...|+|.+.....
T Consensus 259 ---------------------------~--~--~~~~~~~~a~~d---p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~ 304 (495)
T KOG2533|consen 259 ---------------------------N--K--FKWKGFKEALKD---PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNG 304 (495)
T ss_pred ---------------------------c--c--cCHHHHHHHHhc---hhHHHHHHHHHHHhhccccHHHHHHHHHHcCC
Confidence 0 0 011233333321 12333444556666677777777776653210
Q ss_pred cCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhh----hChhHHHHHHHHHHHHHH-HHHHhhchhhHHHHHH
Q 014265 256 RCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT----AGRKLSITIMFTLSCLFL-LPLVTYQSNILTTGLL 330 (427)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~----~GRr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 330 (427)
+.+............++++++.+++++++|| ..+|........+..... ..+.............
T Consensus 305 ----------~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~ 374 (495)
T KOG2533|consen 305 ----------GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAF 374 (495)
T ss_pred ----------CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHH
Confidence 0111111112334456778899999999999 566665544333222222 2221222122222222
Q ss_pred HHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhh-hHhHhhhHHHHH
Q 014265 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAV 380 (427)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~-~~~~~i~p~~~~ 380 (427)
+...+...........++++....+.|..+...++..+ ..++.++|.+..
T Consensus 375 ~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~ 425 (495)
T KOG2533|consen 375 LIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFR 425 (495)
T ss_pred HhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcc
Confidence 22223333445667888888888888877777766665 466777766654
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-17 Score=153.43 Aligned_cols=313 Identities=16% Similarity=0.144 Sum_probs=200.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHH---HHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHHHHHHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYI---TLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 102 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~---~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~ 102 (427)
||+|-|+...++.++..+-.+..+++.++. ++++++++.|++=|...+..++.+++.||+++|.+.++.. .-++|.
T Consensus 74 drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~ 152 (417)
T COG2223 74 DRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGV 152 (417)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccH
Confidence 699999999999999999999998886655 9999999999986655667788899999999999999988 888888
Q ss_pred hHHHHHHHHhcCCCC---chHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccccc
Q 014265 103 VSEAIGAWIIMPRLD---WRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179 (427)
Q Consensus 103 i~~~~~~~~~~~~~~---WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~ 179 (427)
.+...++..+....+ ||....+-.++.++..+.. |+..++.+|. ++ +.++.
T Consensus 153 av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~--------~~~~~d~p~~-r~--------~~~~~--------- 206 (417)
T COG2223 153 AVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLA--------WLGMNDVPEH-RA--------SVKPQ--------- 206 (417)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--------HHHhCCChhh-hc--------ccccc---------
Confidence 888877777766677 9998777665555544333 2223322221 00 00000
Q ss_pred ccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 014265 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
. . .+++..++ .++++.+..+++.+.=++-++..+.|++...+
T Consensus 207 --------------------------~---~-~~~~~v~~---~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~----- 248 (417)
T COG2223 207 --------------------------L---P-AQLKAVFS---NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ----- 248 (417)
T ss_pred --------------------------c---h-hHHHHHhc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 0 0 01222232 23455566666666555666666667654211
Q ss_pred CCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc------h-hhHHHHHHHH
Q 014265 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ------S-NILTTGLLFG 332 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~ 332 (427)
...+............+.+...-.++|+++||+|.++.+...+..+.++........ . ........+.
T Consensus 249 -----fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (417)
T COG2223 249 -----FGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLA 323 (417)
T ss_pred -----cCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHH
Confidence 011111111112222222333334789999999888877776666655555444322 1 1222222223
Q ss_pred HHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhhc
Q 014265 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~l 409 (427)
...+...+.+..|..++.+||.+ -+...|+...+|.+||+.-|...+...+..+ ....+.++..+.+++.+.....
T Consensus 324 l~~~~G~GnGsvfk~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 324 LFVFAGLGNGSVFKMIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHhccCcchheeechHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344446678899999999884 4556699999999999999999888777665 4566777777777776655443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-15 Score=149.85 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=98.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchh-hhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+..+..++.+...+++|+..+++.|++.|++.|...+ ...+..|..|+++|+++.+..+.+..+|..+
T Consensus 68 Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (394)
T PRK11652 68 DRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLL 147 (394)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999886543 3456679999999999999999999999888
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHH-HHhhcccCchh
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPR 144 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~-~~~~~lpESP~ 144 (427)
++.++..+....+||..+.+.++..++.. ...+++||+|+
T Consensus 148 g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 148 APLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 88887777667899999998877655443 33456788753
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-15 Score=150.94 Aligned_cols=287 Identities=13% Similarity=0.049 Sum_probs=178.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSF---SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~---a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||+++.++.++++++.++... .+|+.++++.|++.|+|.|.. ....+++.|..|+++|++..++.+.+.++|
T Consensus 63 ~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG 142 (410)
T TIGR00885 63 KKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFG 142 (410)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHH
Confidence 5999999999999999999887543 468999999999999999986 456788889999999999999999999999
Q ss_pred HhHHHHHHHHhcC--------------------------CCCchHHHHhhhHHHHHHHHHh--hcccCchhHHhhcCchH
Q 014265 102 SVSEAIGAWIIMP--------------------------RLDWRWLLGLSSIPSFILLAFL--GFQPESPRYLCLKGRTA 153 (427)
Q Consensus 102 ~i~~~~~~~~~~~--------------------------~~~WR~~~~~~~i~~li~~~~~--~~lpESP~~L~~~gr~~ 153 (427)
..+++.+...+.. ..+||.+|++.++..++..+.. ..+||.++ +
T Consensus 143 ~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~ 214 (410)
T TIGR00885 143 SIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------S 214 (410)
T ss_pred HHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------c
Confidence 9988877655421 1259999987777655543332 22343211 0
Q ss_pred HHHHHHHHHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHH
Q 014265 154 EAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLL 233 (427)
Q Consensus 154 ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (427)
+.+ + + + .+ ...+.+++++......+...++
T Consensus 215 ~~~------------~-----------------~--~-------------~~------~~~~~~~~~~~~~~~~l~~f~y 244 (410)
T TIGR00885 215 DAK------------Q-----------------I--S-------------FS------ASLSRLARIRHYREGVIAQFFY 244 (410)
T ss_pred ccc------------c-----------------c--c-------------ch------hhHHHHHhChhHHHHHHHHHHH
Confidence 000 0 0 0 00 0111222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHH
Q 014265 234 FGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLF 313 (427)
Q Consensus 234 ~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~ 313 (427)
.+... +...+.+....... . .........+. ........+|-++++++.||+++|+.+.+....+...
T Consensus 245 vg~e~---~~~s~l~~y~~~~~------~-~~~~~~a~~~~--~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 245 VGVQI---MCWTFIIQYAVRLI------P-GMTAGFAANYN--IGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHH---HHHHHHHHHHhhcc------C-CCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 22222 22222332221100 0 00001111111 1222445678899999999999999887766666555
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 314 LLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
.+......+. .....+....++....|+..+....+.++++.+..+.+++.+. +|+.+.|.+.+.+.+.
T Consensus 313 ~ll~~~~~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 313 CLGSIFAGGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 4443332222 2233333444556667888999999999999887777777765 9999999999988774
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-15 Score=151.05 Aligned_cols=330 Identities=12% Similarity=0.008 Sum_probs=176.1
Q ss_pred hhccc-hhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhh----hhhhh----hccCCCCchhHHHHHH
Q 014265 26 WQNLV-RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVF----LSWFL----EFVPPSNRGMWMVIFS 95 (427)
Q Consensus 26 ~~~GR-k~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~----~~~~~----E~~p~~~Rg~~~~~~~ 95 (427)
||+|| |+.+.++.++.+++.....+.+++..+.+.|++.|++.+.. +.. ..+.. |......|.+..+.
T Consensus 63 dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~-- 140 (418)
T TIGR00889 63 DKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT-- 140 (418)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh--
Confidence 58865 77888888888888888889999999999999999976543 222 22322 33333334443332
Q ss_pred HHHHHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccc
Q 014265 96 SFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL 175 (427)
Q Consensus 96 ~~~~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~ 175 (427)
+|.+++++++..+....+|+..+ +.++..++..+..+.+||+|+ .+++.++ ..++ .+
T Consensus 141 ----lG~~ig~~l~g~l~~~~~~~~f~-~~~~~~~~~~~~~~~~~e~~~---~~~~~~~---~~~~---~~--------- 197 (418)
T TIGR00889 141 ----IGFIAAMWAVSLLDIELSNIQLY-ITAGSSALLGVFALTLPDIPV---AKSTAKM---SIKV---ML--------- 197 (418)
T ss_pred ----HHHHHHHHHHHHhcccchhHHHH-HHHHHHHHHHHHHhcCCCCCC---Ccccccc---CHHH---Hh---------
Confidence 45555555544443334566444 444444444445567888873 0000000 0000 00
Q ss_pred ccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014265 176 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD 254 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 254 (427)
. ...+.+++ ++.+.-.+...+....+. .++. +..+.+...+
T Consensus 198 ----------------------------------~-~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~g 239 (418)
T TIGR00889 198 ----------------------------------G-LDAFILFKNKRMAIFFFFSMLLGAPLQ-ITNI--FGNGFLHEFG 239 (418)
T ss_pred ----------------------------------h-hhHHHHhcCCCeeeHHHHHHHHHhHHH-HHHH--hHHHHHHHhc
Confidence 0 01112222 222111111111111111 1111 1111121111
Q ss_pred ccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhh---HH-HHHH
Q 014265 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNI---LT-TGLL 330 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~ 330 (427)
.. +.. ..+...........+..+..+++.+..+.+.||+|||+.+..+.+..++............ .. ....
T Consensus 240 ~~---~~~-~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~ 315 (418)
T TIGR00889 240 RN---PEF-ADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSM 315 (418)
T ss_pred cc---ccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 00 000 0000001112333445567778888899999999999999887776655443333222111 11 1111
Q ss_pred HHHHHHHhhhhHhHHHhcccccccchhhHHHHHHH-HhhhHhHhhhHHHHHHHHhhcc------hhHHHHHHHHHHHHHH
Q 014265 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAAN-AMGRIGGMVCPLVAVALVANCH------QMTAVVLLVVVIVTSI 403 (427)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~-~~~~~~~~i~p~~~~~l~~~~~------~~~~~~~~~~~~~i~~ 403 (427)
.+...+..........+.+|.+|++.|+++.|+.+ ....+|++++|.+.+.+.+..+ ....+.+.+++.+++.
T Consensus 316 ~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~ 395 (418)
T TIGR00889 316 IVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILA 395 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence 11222222233455778999999999999999998 4567899999999998887643 2345566666766676
Q ss_pred HHHhhccCccCCccccccc
Q 014265 404 LSVMLIPFETKGQELSDTV 422 (427)
Q Consensus 404 ~~~~~l~pEtkg~~l~e~~ 422 (427)
+..+++.||++++--.|..
T Consensus 396 ~l~~~~~~~~~~~~~~~~~ 414 (418)
T TIGR00889 396 VLFMIFFKYSHNAIKVDDR 414 (418)
T ss_pred HHHHHHhCCcccCCCCccc
Confidence 7777777888776544443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7e-16 Score=152.12 Aligned_cols=315 Identities=14% Similarity=0.056 Sum_probs=182.2
Q ss_pred hhhccchhhhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHH
Q 014265 18 FMFRLPHLWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 18 ~~~~~~~~~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
+.+.++| |+|||+.+.++.+...++.+..++++|++.++++|++.|.+.+.. +....++.|..|+++|++..++...
T Consensus 62 ~~G~l~D--r~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 139 (395)
T PRK10054 62 GFGILAD--KFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYT 139 (395)
T ss_pred HHHHHHh--hcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Confidence 3444444 999999999999999999899999999999999999988876654 4567888999999999999999999
Q ss_pred HHHHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccc
Q 014265 97 FWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL 175 (427)
Q Consensus 97 ~~~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~ 175 (427)
..++|..+++.++..+. ..+||..|.+.++..++..+. .+++||.++ +++.++ ++.
T Consensus 140 ~~~lg~~igp~l~~~l~-~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~----~~~~~~-~~~----------------- 196 (395)
T PRK10054 140 MLNIGWTVGPPLGTLLV-MQSINLPFWLAAICSAFPLVFIQIWVQRSEK----AIATET-GSV----------------- 196 (395)
T ss_pred HHHHHHHHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHHHHHhcccc----ccccch-hhh-----------------
Confidence 99999999888877665 368999999877666554333 333454431 000000 000
Q ss_pred ccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014265 176 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD 254 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 254 (427)
...++.++ ++.+.-.+...+ ..+.+.....+.+......
T Consensus 197 ------------------------------------~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~ 236 (395)
T PRK10054 197 ------------------------------------WSPSVLLQDKALLWFTCSGFL----ASFVSGAFASCISQYVMVV 236 (395)
T ss_pred ------------------------------------hhhhhhccCceehHHHHHHHH----HHHHHHHhhhhHHHHHHHh
Confidence 00011121 111111111111 1111111111111111000
Q ss_pred ccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhH-HHHHHHHH
Q 014265 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL-TTGLLFGA 333 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 333 (427)
...............+......+.....+.+.||.+||+.+..+..........+....++.. ........
T Consensus 237 --------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (395)
T PRK10054 237 --------ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVF 308 (395)
T ss_pred --------cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 000001111111122222333444566778899999999887766544443333332222221 11112222
Q ss_pred HHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 014265 334 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 334 ~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 406 (427)
..+.....+.......+.-|++.|++..+..+ .+.+|..++|.+.+.+.+..+....+.+.+.+...+.+..
T Consensus 309 ~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 309 TVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 22222223345677889999999999988654 6779999999999999888765555555555544444333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-16 Score=173.88 Aligned_cols=295 Identities=13% Similarity=-0.066 Sum_probs=173.0
Q ss_pred hhccchhHHHH---HHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHh
Q 014265 26 WQNLVRMGFLG---EALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~~~~---~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||+.+.. ..+...+..+.....+|+++++++|+++|++.+.. ++..+++.|+.|+++|++++++.+...++|
T Consensus 77 Dr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig 156 (1140)
T PRK06814 77 DKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIA 156 (1140)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHH
Confidence 59999997533 33333333344445589999999999999998865 667888899999999999999999999999
Q ss_pred HhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccccccc
Q 014265 102 SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 181 (427)
Q Consensus 102 ~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~ 181 (427)
.+++++++.++....+||+.|...++..++.++..+++||++.= .+++..+. +.
T Consensus 157 ~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~----------------------- 210 (1140)
T PRK06814 157 ILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLKIDR-NI----------------------- 210 (1140)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeecc-ch-----------------------
Confidence 99999998888788899999965555555555555566665420 00000000 00
Q ss_pred CCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 014265 182 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL 261 (427)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~ 261 (427)
.++....++.+.+.+......+. .+...+.+++...+.|.+....
T Consensus 211 -------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~------- 255 (1140)
T PRK06814 211 -------------------------IRSTITLLKYAKADKRIWLAILG---ISWFWLVGAVVLSQLPLLAKET------- 255 (1140)
T ss_pred -------------------------HHHHHHHHHHHhcCchHHHHHHH---HHHHHHHHHHHHHHhHHHHHHH-------
Confidence 00001123333333222221111 1112222233333334332110
Q ss_pred ccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh--------------------c
Q 014265 262 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--------------------Q 321 (427)
Q Consensus 262 ~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~--------------------~ 321 (427)
.+.+...........+++.++|.++.+.+.|+.++++.+..+.++.+++.+.+... .
T Consensus 256 ---~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1140)
T PRK06814 256 ---LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR 332 (1140)
T ss_pred ---cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc
Confidence 01111111222344456667888888889887766655444333322222211110 1
Q ss_pred hhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHh
Q 014265 322 SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~ 384 (427)
+.+...+..++..++........+++..+..|.+.|++..|+.+.++.++..+++.+.+.+..
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112111212222222233334578899999999999999999999999999999988887754
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=148.19 Aligned_cols=286 Identities=17% Similarity=0.156 Sum_probs=168.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+.++..+..++.+.. .+++...+++.|++.|++.|... ....+..|+.| ++|+++.+..+....+|..+
T Consensus 60 dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i 137 (355)
T TIGR00896 60 RRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAAL 137 (355)
T ss_pred HHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHH
Confidence 59999999999998888888877 78899999999999999998754 34556678886 58999999999999999988
Q ss_pred HHHHHHHhcCCC--CchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccC
Q 014265 105 EAIGAWIIMPRL--DWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 182 (427)
Q Consensus 105 ~~~~~~~~~~~~--~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (427)
++.+...+.... +||..|.+.++..++... .++||+++ +.++ + ++
T Consensus 138 ~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~------~~~~-----------~-~~------------- 184 (355)
T TIGR00896 138 AAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQVRR------RVAA-----------N-QT------------- 184 (355)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhhhcc------ccCC-----------C-CC-------------
Confidence 877765554433 499988776654433222 23343321 0000 0 00
Q ss_pred CCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCc
Q 014265 183 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
.. +. ..+++++++. .+............+++...+.|.+....
T Consensus 185 --~~------------------~~------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-------- 227 (355)
T TIGR00896 185 --TT------------------RL------TPVRIWRSPL---AWQVTVFFGLQSGLYYSLIGWLPAILISH-------- 227 (355)
T ss_pred --CC------------------CC------CCchhhcCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 00 00 0011122111 11122222233445555555556543211
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhh
Q 014265 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~-GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
+.+.........+..++.+++.++.+++.||+ +||..+..+.....+.........++.... ...+..++....+
T Consensus 228 ---g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~ 303 (355)
T TIGR00896 228 ---GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAF 303 (355)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHh
Confidence 11111112223345667788889999999999 566565555444433333222222221111 1122222222233
Q ss_pred HhHHHhcc-cccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc
Q 014265 342 TVSLIYAA-EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 342 ~~~~~~~~-ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~ 387 (427)
+....... +..|++.+++..++.+.++++++.++|.+.+++.+..+
T Consensus 304 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 304 PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444 44456788999999999999999999999998877654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-15 Score=146.61 Aligned_cols=132 Identities=11% Similarity=0.038 Sum_probs=85.6
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+...++.++.+.+.||+|||+.+..+..+.++..+......+.+......................+.+|.+|++.|
T Consensus 270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 349 (420)
T PRK09528 270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLS 349 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccce
Confidence 34456678888999999999999988776655554444433333333222211111111112233456788999999999
Q ss_pred hHHHHH-HHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014265 358 STGAGA-ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 358 ~~~~g~-~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
+++.+. .+..+.+|++++|.+.+.+.+..+....+..++++.++..++.++.
T Consensus 350 a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 350 ATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred eeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Confidence 998776 4666789999999999988887665556666666665555444444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-14 Score=140.74 Aligned_cols=307 Identities=11% Similarity=-0.072 Sum_probs=172.6
Q ss_pred hhhccchhHHHHHH-HHHHHHHH-HhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHh
Q 014265 25 LWQNLVRMGFLGEA-LVTAGAGL-LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 25 ~~~~GRk~~~~~~~-~~~~~~~~-~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
.||+||++...... +...+..+ ...++++++.+++.|.++|.+.+.. +...++..|+ +++|++..+......++|
T Consensus 63 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG 140 (382)
T TIGR00902 63 IKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAA 140 (382)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHH
Confidence 36899854432221 11222222 4457889999999999999887664 4445555564 467888888888888899
Q ss_pred HhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccccccc
Q 014265 102 SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 181 (427)
Q Consensus 102 ~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~ 181 (427)
.+++++++..+....|||..|.+.++...+... ...++|+|+ +++.++ +
T Consensus 141 ~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~----~~~~~~--------------~------------ 189 (382)
T TIGR00902 141 FIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIP----PKDAIP--------------E------------ 189 (382)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCC----CCcccc--------------c------------
Confidence 999988877777778999998876544222222 223333321 000000 0
Q ss_pred CCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 014265 182 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL 261 (427)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~ 261 (427)
+ + .++ ....+++++++......+...+ ....++....+.+......
T Consensus 190 ---~-~----------------~~~----~~~~~~~l~~~~~~~~l~~~~l---~~~~~~~~~~~~~~~l~~~------- 235 (382)
T TIGR00902 190 ---D-E----------------SQG----DSAFIALLKNPMNLRFLAAVCL---IQGAHAAYYGFSAIYWQAA------- 235 (382)
T ss_pred ---c-c----------------ccc----chhHHHHHcChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC-------
Confidence 0 0 000 0122233433221111111111 1122222222223222110
Q ss_pred ccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhh
Q 014265 262 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 262 ~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
+.+.........+..+.++++..+.+.+.||+|+|+++..+.....+........++.+.....-....+.....+
T Consensus 236 ----g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~ 311 (382)
T TIGR00902 236 ----GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCH 311 (382)
T ss_pred ----CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 1111111122334566777788888999999999999888777766555544443333322222222222223344
Q ss_pred HhHHHhcccccccchhhHHHHHHHHhh-hHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 014265 342 TVSLIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSIL 404 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~-~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 404 (427)
.....++.+. |++.|+++.++.+... .+|..++|.+.+.+.+..+. ..+...+.+.+++.+
T Consensus 312 ~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 312 LAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 5567788888 9999999999987554 58899999999988887653 445666666555543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-14 Score=142.01 Aligned_cols=318 Identities=14% Similarity=0.046 Sum_probs=166.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHh---hccc-----hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLS---SFSP-----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~---~~a~-----~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+.++......+++.... .+++ ....+++.|++.|++.+.. +....+..|..++ ++...+....
T Consensus 63 Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~ 140 (396)
T TIGR00882 63 DKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARM 140 (396)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhh
Confidence 49999999988766665443322 1222 2345677788888887764 4455566565433 2333344445
Q ss_pred HHHHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhh-cccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccc
Q 014265 97 FWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL 175 (427)
Q Consensus 97 ~~~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~-~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~ 175 (427)
..++|..+++.++..+. ..+||.+|++.++.+++..+..+ ..||+|+. ++.+ + + .+
T Consensus 141 ~~~~g~~~g~~~~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~----~-~~------ 197 (396)
T TIGR00882 141 FGCVGWALCASIAGILF-SIDPQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVA----N----A-LG------ 197 (396)
T ss_pred hcccHHHHHHHHHhhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhh----c----c-cc------
Confidence 55667666666655543 46999999988776665544333 34544421 0000 0 0 00
Q ss_pred ccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc
Q 014265 176 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL-SSLD 254 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l-~~~~ 254 (427)
. ++ +++ ...+..++++++.... .....+.....+.....+.+.. ....
T Consensus 198 ---~----~~------------------~~~---~~~~~~~~l~~~~~~~---~~l~~~~~~~~~~~~~~~~~~y~~~~~ 246 (396)
T TIGR00882 198 ---A----NA------------------SAF---SLKLALELFRQRKFWM---FVLYVVGVACVYDVFDQQFANFFTSFF 246 (396)
T ss_pred ---c----cc------------------CCC---CHHHHHHHHcCCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 00 000 0012334443322111 1111112222222121111211 1100
Q ss_pred ccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 014265 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGAR 334 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (427)
.....+.........+..+...++....+.+.||+|||+.+..+....++.........+.+.......+..
T Consensus 247 --------~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g 318 (396)
T TIGR00882 247 --------ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHA 318 (396)
T ss_pred --------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 000001111112233445566777788899999999999887766555443333233233332222222222
Q ss_pred HHHhhhhHhHHHhcccccccchhhHHHHH-HHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 014265 335 MCVMGAFTVSLIYAAEIYPTSVRSTGAGA-ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVM 407 (427)
Q Consensus 335 ~~~~~~~~~~~~~~~ElfPt~~R~~~~g~-~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 407 (427)
.+..........+..|.+|++.|+++.+. .+....+|++++|.+.+++.+..+...++.+.+++.++..+...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 319 FEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 22222223456678899999999998877 46778899999999999998876655666666666655555443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.9e-15 Score=146.08 Aligned_cols=301 Identities=14% Similarity=0.011 Sum_probs=172.2
Q ss_pred hhhhccchhh--hccchh-HHHHHHHHHHHHHHHhhccch------HHHHHHHHHHhhhccccch-hhhhhhhhcc-CCC
Q 014265 17 IFMFRLPHLW--QNLVRM-GFLGEALVTAGAGLLSSFSPN------YITLITLRCLVGVGLGSGH-VFLSWFLEFV-PPS 85 (427)
Q Consensus 17 ~~~~~~~~~~--~~GRk~-~~~~~~~~~~~~~~~~~~a~~------~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~-p~~ 85 (427)
.+++.++|-. |+|||| .++.+....+++.++..+.++ ...+++.+++.+++.+... ...++..|.+ +++
T Consensus 53 p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 132 (437)
T TIGR00792 53 PIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR 132 (437)
T ss_pred chheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH
Confidence 3445555532 589855 566777888888887777664 4567778888888776543 3355667887 468
Q ss_pred CchhHHHHHHHHHHHhHhHHHHHHHHhc-------CCCCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHHHH
Q 014265 86 NRGMWMVIFSSFWTIGSVSEAIGAWIIM-------PRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHR 157 (427)
Q Consensus 86 ~Rg~~~~~~~~~~~iG~i~~~~~~~~~~-------~~~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea~~ 157 (427)
+|++..++.+.+..+|.++++.+...+. +..+||..+.+.++.+++..+. .+..||.|+. +.++
T Consensus 133 ~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~-----~~~~--- 204 (437)
T TIGR00792 133 ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE-----IPKN--- 204 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC-----CCcc---
Confidence 8999999999888888776655433221 2468999998888777665444 3455654410 0000
Q ss_pred HHHHHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHH
Q 014265 158 ALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNS 237 (427)
Q Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (427)
+ ++ + .+....++.+++.+..+..+. ..+...
T Consensus 205 -----------~-----------------~~-----------------~-~~~~~~~~~l~~~~~~~~~~~---~~~~~~ 235 (437)
T TIGR00792 205 -----------I-----------------EK-----------------K-LSLKQIFKALFKNDQLLILCL---AYLFYN 235 (437)
T ss_pred -----------c-----------------cc-----------------C-CCHHHHHHHHhCCHHHHHHHH---HHHHHH
Confidence 0 00 0 000113344444332222211 111222
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH
Q 014265 238 FAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL 317 (427)
Q Consensus 238 ~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~ 317 (427)
..++....+.+.+.... .+ +.........+..+..+++..+.+.+.||+|||+.+..+....++..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 304 (437)
T TIGR00792 236 LAFNIKNGVQVYYFTYV----------LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF 304 (437)
T ss_pred HHHHHHcchhheeEeee----------cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 22222221222221100 01 11111112233456677788889999999999998877765554443333
Q ss_pred Hhhchh-hHHHHHHHHHHHHHhhhhHhHHHhcccccc-------cchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 318 VTYQSN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYP-------TSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 318 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP-------t~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
....++ +.......+..++........+.+.+|..| .+.+++..|+.+.+.++++.+++.+.+.+++.
T Consensus 305 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 305 FFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 222222222223333345567788888765 56788999999999999999999999888764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-14 Score=136.36 Aligned_cols=303 Identities=9% Similarity=-0.090 Sum_probs=159.1
Q ss_pred hhhccch----hHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHH
Q 014265 25 LWQNLVR----MGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 25 ~~~~GRk----~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
.||+||| +.+.+..... .......++|++.+++.|++.|++.+.. +...++..++ +++|++..+.......
T Consensus 63 ~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~ 138 (382)
T PRK11128 63 VKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGS 138 (382)
T ss_pred HhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHH
Confidence 4799984 2222222221 2223445688999999999999987765 4444555555 3456666666777778
Q ss_pred HhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccccc
Q 014265 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179 (427)
Q Consensus 100 iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~ 179 (427)
+|..+++.++.++....|||..|++.++..++..+...+.||.++ +++.++
T Consensus 139 lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------------- 189 (382)
T PRK11128 139 IAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP----QGESRQ------------------------- 189 (382)
T ss_pred HHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----cccccc-------------------------
Confidence 888888888888777789999998776544433333333444211 000000
Q ss_pred ccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 014265 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
+. + +. ...++++++++..........+ ....+.+...+.+......
T Consensus 190 ----~~-----------------~--~~---~~~~~~i~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~----- 235 (382)
T PRK11128 190 ----QE-----------------S--AG---WPAWKALLKEPTVWRFLLCVSL---LQGSHAAYYGFSAIYWQAA----- 235 (382)
T ss_pred ----cc-----------------c--cc---cchHHHHHcChhHHHHHHHHHH---HHHHhHhHHHHHHHHHHHC-----
Confidence 00 0 00 0123344443322211111111 1111211112222221100
Q ss_pred CCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhh
Q 014265 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG 339 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (427)
+.+.........+..+..++...+.+.+.||.|+|+.+..+....++..+.....++.+......++..++...
T Consensus 236 ------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 309 (382)
T PRK11128 236 ------GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTV 309 (382)
T ss_pred ------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 01111111222244556677778889999999999998777666555444333333333222222222222222
Q ss_pred hhHhHHHhcccccccchhhHHHHHHHHhh-hHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 014265 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTS 402 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~-~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~ 402 (427)
.......+..+. |++.+++..+..+..+ .+|..++|.+.+.+.+..+. ..++..+.+.+++
T Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 310 CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 234455666676 4555688888887554 45668999999988877653 3444444444443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-14 Score=142.01 Aligned_cols=350 Identities=19% Similarity=0.175 Sum_probs=186.0
Q ss_pred hhhhccchhhhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHH
Q 014265 17 IFMFRLPHLWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 17 ~~~~~~~~~~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
.+.++++| .+|||..++.+.++..+|.+.++-++|..+++.+-.+.|+|.|........+.|..|.|+|+....+...
T Consensus 96 ~~~G~LSD--lfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~ 173 (599)
T PF06609_consen 96 PFVGRLSD--LFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASI 173 (599)
T ss_pred HhhHHHHH--HhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHH
Confidence 56777787 6999999999999999999999999999999999999999988765544457899999999876666554
Q ss_pred HHHHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHH--HHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcc
Q 014265 97 FWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL--AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGK 174 (427)
Q Consensus 97 ~~~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~--~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~ 174 (427)
...+....++.++..+..+.+|||.+++.++...+.+ ..+++.|.+ +-..+++....++.++++--.-. -+....
T Consensus 174 ~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~--~~~~~~~~~s~~~~l~~lD~IG~-~L~~~G 250 (599)
T PF06609_consen 174 PFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP--RAQLHGRKLSKREQLKELDWIGI-FLFIAG 250 (599)
T ss_pred HHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc--hhhhccccCcHHHHHHHhhHHHH-HHHHHH
Confidence 4444333445555555556799999998877654433 233445533 32223322111122222210000 000000
Q ss_pred cc-----cccccCCCC-CCCCccchhhccc------C--CCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHH
Q 014265 175 LV-----ARRSTLPTG-ERAPPELVHLLSS------N--GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAY 240 (427)
Q Consensus 175 ~~-----~~~~~~~~~-~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (427)
+. ..-....+. .++..-....... . -|.... .+..+ -..++|+. +|...+..+..+...+.|
T Consensus 251 l~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~-~~~Pl-~P~~Lf~~--~r~~~~~lvi~fi~G~~~ 326 (599)
T PF06609_consen 251 LALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGA-PKDPL-FPHRLFKD--RRGFAALLVISFISGMNF 326 (599)
T ss_pred HHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhcc-CCCCc-CCHHHhcc--chHHHHHHHHHHHHHHHH
Confidence 00 000000000 0000000000000 0 000000 00111 11234432 122333333333344556
Q ss_pred HHHH-HHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHH-HHHHHHHHHHHHHHHH
Q 014265 241 YAVV-LLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS-ITIMFTLSCLFLLPLV 318 (427)
Q Consensus 241 y~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~-~~~~~~~~~~~~~~~~ 318 (427)
|+.. +|..+...--+ ................+++...|.++.+.+..+++|-+. ++.+......++.+++
T Consensus 327 ~s~~~l~p~~~~~vf~--------~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama 398 (599)
T PF06609_consen 327 FSVNILWPQQVVNVFG--------SDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMA 398 (599)
T ss_pred HHHHHHHHHHHhhhcc--------CCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHH
Confidence 6664 44444331100 000000011112233445556677788888888877554 4455444433333333
Q ss_pred h--hchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 319 T--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 319 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
. .++......+..+..++..+.-.+..+...-.-|++.-+++.|+..++-.+||.++.-++..++
T Consensus 399 ~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 399 AVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2 2222223344455555555555677888888899999999999999998888888766654443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-14 Score=143.69 Aligned_cols=134 Identities=16% Similarity=-0.012 Sum_probs=102.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc------chHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFS------PNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFW 98 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a------~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~ 98 (427)
||+|||+++.++.++++++.++++++ ++++++++.|++.|+|.|... .......+++| ++||++.++...+.
T Consensus 86 Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~ 164 (591)
T PTZ00207 86 DYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFT 164 (591)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHH
Confidence 69999999999999999999999987 689999999999999987653 44556679987 78999999999999
Q ss_pred HHhHhHHHHH-HHHhcCCCCchHHHHhhhHHHHHHH-HH--hhcccCchhHHhhcCchHHHHHHHHHH
Q 014265 99 TIGSVSEAIG-AWIIMPRLDWRWLLGLSSIPSFILL-AF--LGFQPESPRYLCLKGRTAEAHRALEKI 162 (427)
Q Consensus 99 ~iG~i~~~~~-~~~~~~~~~WR~~~~~~~i~~li~~-~~--~~~lpESP~~L~~~gr~~ea~~~l~~~ 162 (427)
++|..+.+.+ ..+.. .+|+..|++.++.+++.. +. ....||+|+|...++|.+|+++.++++
T Consensus 165 gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~ 230 (591)
T PTZ00207 165 GLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLM 230 (591)
T ss_pred HHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhh
Confidence 9999754433 33332 468887776665544432 22 235789999987777777777665443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=133.37 Aligned_cols=116 Identities=18% Similarity=0.074 Sum_probs=93.2
Q ss_pred hccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHHHHHHhHhHHH
Q 014265 27 QNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEA 106 (427)
Q Consensus 27 ~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~~ 106 (427)
|||||++++.+++..+++-++-+++.|+..+++.|++.|+..|...+..++++|+.++++|+..++.+...+++|.++++
T Consensus 94 ~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGP 173 (451)
T KOG2615|consen 94 RYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGP 173 (451)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcc
Confidence 89999999999999999999999999997777779999999999888899999999999999999999999999999998
Q ss_pred HHHHHhcC---CCC--chH-HHHhhhHHHHH-HHHHhhcccCc
Q 014265 107 IGAWIIMP---RLD--WRW-LLGLSSIPSFI-LLAFLGFQPES 142 (427)
Q Consensus 107 ~~~~~~~~---~~~--WR~-~~~~~~i~~li-~~~~~~~lpES 142 (427)
.++.++.. ..+ |-. +-++..+.+.. ...+.+++||+
T Consensus 174 mIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 174 MIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred hhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 88766533 111 222 12232333333 44456789999
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-13 Score=136.63 Aligned_cols=106 Identities=14% Similarity=0.009 Sum_probs=91.9
Q ss_pred hh-ccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCC---chhHHHHHHHHHHH
Q 014265 26 WQ-NLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN---RGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~-~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~i 100 (427)
|| +|||+++.++.++.+++.++.++++++..++++|++.|+|.|.. +...++..|+.|+++ |+...++.....++
T Consensus 73 Dr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~ni 152 (475)
T TIGR00924 73 DRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINI 152 (475)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHH
Confidence 58 89999999999999999999999999999999999999999876 456678889998764 88888999999999
Q ss_pred hHhHHHHHHHHhcCCCCchHHHHhhhHHHHH
Q 014265 101 GSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI 131 (427)
Q Consensus 101 G~i~~~~~~~~~~~~~~WR~~~~~~~i~~li 131 (427)
|.++++.++..+....+||+.|.+.++..++
T Consensus 153 G~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~ 183 (475)
T TIGR00924 153 GSFISPLLAGVIAENYGYHVGFNLAAVGMVI 183 (475)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 9999998888877778999999887754433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-15 Score=146.28 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=103.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
|||-||.++.++..+|..+.++++++..|+++.++|.+.|+|+... +++.+.++..+|..+|+++.++++...++|..+
T Consensus 93 dryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl 172 (493)
T KOG1330|consen 93 DRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL 172 (493)
T ss_pred hhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce
Confidence 5999999999999999999999999999999999999999999875 677889999999999999999999999999998
Q ss_pred HHHHHHHhcCCCC-chHHHHhhhHHHHHHHHHhh-cccCch
Q 014265 105 EAIGAWIIMPRLD-WRWLLGLSSIPSFILLAFLG-FQPESP 143 (427)
Q Consensus 105 ~~~~~~~~~~~~~-WR~~~~~~~i~~li~~~~~~-~lpESP 143 (427)
+.+.+..+.+..+ ||+.|...++.+++..++.+ +.+|-+
T Consensus 173 G~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 173 GYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred eEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 8877776665555 99999999988887665544 445444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-13 Score=136.42 Aligned_cols=102 Identities=17% Similarity=0.059 Sum_probs=87.9
Q ss_pred hh-ccchhHHHHHHHHHHHHHHHhhccchHHH-HHHHHHHhhhccccc-hhhhhhhhhccCCCC--chhHHHHHHHHHHH
Q 014265 26 WQ-NLVRMGFLGEALVTAGAGLLSSFSPNYIT-LITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~-~GRk~~~~~~~~~~~~~~~~~~~a~~~~~-l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~i 100 (427)
|| +|||++++++.+++.++++.++++++... ++++|.++|+|.|.. +...+.+.|..|+++ |+...+++...+++
T Consensus 75 Dr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ni 154 (489)
T PRK10207 75 DHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINI 154 (489)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHH
Confidence 48 99999999999999999999999887554 558999999999986 455778899999874 57788899999999
Q ss_pred hHhHHHHHHHHhcCCCCchHHHHhhhH
Q 014265 101 GSVSEAIGAWIIMPRLDWRWLLGLSSI 127 (427)
Q Consensus 101 G~i~~~~~~~~~~~~~~WR~~~~~~~i 127 (427)
|..+++.++.++....|||+.|++.++
T Consensus 155 g~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 155 GSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 999998888888878899999988654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-13 Score=134.00 Aligned_cols=326 Identities=17% Similarity=0.031 Sum_probs=190.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSF-----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~-----a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
||+.||+.++.+-++..+..+..++ ..+.+.+++.-|+.|++.... |+-.+.+-|++|+++-..+.++.+...+
T Consensus 70 Dr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~n 149 (524)
T PF05977_consen 70 DRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFN 149 (524)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence 5999999999988877665554432 246788999999999998765 5567888899999999999999999999
Q ss_pred HhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccccc
Q 014265 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179 (427)
Q Consensus 100 iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~ 179 (427)
+..++++.++..+....|=...|.+.++--++........+..++ + + +.++++.
T Consensus 150 iar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~-~-----------------~~~~e~~---- 203 (524)
T PF05977_consen 150 IARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----P-S-----------------SLPRERF---- 203 (524)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----c-c-----------------ccchhhh----
Confidence 888888888777665567777787776543333222222111000 0 0 0000000
Q ss_pred ccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 014265 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
. ++....++...+.+..+..+....++......++ ..+|.+...
T Consensus 204 ----------------~-----------~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~---aLlPl~a~~------ 247 (524)
T PF05977_consen 204 ----------------F-----------SALREGLRYVRSSPPLRSVLLRSFLFNLFASAVW---ALLPLFARD------ 247 (524)
T ss_pred ----------------h-----------hhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHH---HhhhHHHHH------
Confidence 0 0001133333433333333322222211111122 223433210
Q ss_pred CCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhh
Q 014265 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG 339 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (427)
..+.+...........+++.+.|.++...+.+|.++++++..+.+..+...+.+.+..+.+.....+++..++...
T Consensus 248 ----~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~ 323 (524)
T PF05977_consen 248 ----VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWII 323 (524)
T ss_pred ----HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 0011111112223344555566666666666777777777666666555555555544444433334444444444
Q ss_pred hhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc-cCccCCcc
Q 014265 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI-PFETKGQE 417 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l-~pEtkg~~ 417 (427)
......+..-+.-|.++||+..++..++...+..++.++.+.+.+..+....+.+.++..+++.++.... .|+.+..+
T Consensus 324 ~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~~d 402 (524)
T PF05977_consen 324 ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEELD 402 (524)
T ss_pred HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence 4556677888999999999999999998888888888888888777765555555555555555544433 23444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-12 Score=127.65 Aligned_cols=308 Identities=12% Similarity=-0.019 Sum_probs=160.4
Q ss_pred hhccchhHHHHHHHHH-HHHHHHhh---ccch-HHHHHHHHHHhhhcccc-chhhhhhhhhccCCCCchhHHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVT-AGAGLLSS---FSPN-YITLITLRCLVGVGLGS-GHVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~-~~~~~~~~---~a~~-~~~l~v~R~l~Gi~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
||+||||..++.+.+. .......+ ...+ ...+...-++.++.... ++..-.+..|..++++|+...+....+..
T Consensus 64 ~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~ 143 (390)
T TIGR02718 64 WRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVM 143 (390)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHH
Confidence 3789998865554332 21122222 2222 22333333333333332 23445667899999999988888888888
Q ss_pred HhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccccc
Q 014265 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179 (427)
Q Consensus 100 iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~ 179 (427)
+|.+++......+.+..+||..|++.++..++..+...+++|.++ .+.++.++
T Consensus 144 lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~-----~~~~~~~~---------------------- 196 (390)
T TIGR02718 144 IGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAV-----ASPEAPLA---------------------- 196 (390)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc-----Cccccchh----------------------
Confidence 999988877666667789999999888776654444444433221 00000000
Q ss_pred ccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 014265 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
....++++++++..+..+....++......+|... .+.+.+.
T Consensus 197 ------------------------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~l~~~------ 238 (390)
T TIGR02718 197 ------------------------------RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLS--KLYLVDA------ 238 (390)
T ss_pred ------------------------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHh--hHHHHhc------
Confidence 00122233433332323222222222222222211 1222210
Q ss_pred CCccCCCCCChhHHHHHHHHH-hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHH-HHHHHhhc----hhhHHHHHH-HH
Q 014265 260 PLMFSHHPQDANLYIDEFITS-LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLF-LLPLVTYQ----SNILTTGLL-FG 332 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~-~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~-~~ 332 (427)
+.+...........+ ...+.+.++.+++.||+|+|+.+..+....... ........ ......... ..
T Consensus 239 ------G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (390)
T TIGR02718 239 ------GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAF 312 (390)
T ss_pred ------CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHH
Confidence 011111111111222 244566778899999999999887665544222 22111111 111111111 11
Q ss_pred HHHHHhhhhHhHHHhccccccc-chhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 014265 333 ARMCVMGAFTVSLIYAAEIYPT-SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSIL 404 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt-~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 404 (427)
..+.........+....+..++ +.|++.+++.++...+|+.++|.+.+.+.+..+....+...+.+.+++.+
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 313 GSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 1111122234455555566665 89999999999999999999999999888766554555555555555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-12 Score=130.57 Aligned_cols=106 Identities=15% Similarity=0.043 Sum_probs=86.8
Q ss_pred hh-ccchhHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCC--chhHHHHHHHHHHH
Q 014265 26 WQ-NLVRMGFLGEALVTAGAGLLSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~-~GRk~~~~~~~~~~~~~~~~~~~a~-~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~i 100 (427)
|| +|||+.+.++.++..++..++++++ +...+.++|+++|++.|.. +...+++.|+.|+++ |+...++...+.++
T Consensus 82 Dr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i 161 (500)
T PRK09584 82 DKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI 161 (500)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH
Confidence 59 5999999999999999999998874 5667889999999998875 445677889998754 34567788889999
Q ss_pred hHhHHHHHHHHhcCCCCchHHHHhhhHHHHH
Q 014265 101 GSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI 131 (427)
Q Consensus 101 G~i~~~~~~~~~~~~~~WR~~~~~~~i~~li 131 (427)
|..+++.+..++....|||+.|++.++..++
T Consensus 162 G~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 162 GSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 9999988888877778999999987754444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-11 Score=121.77 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=99.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhhChh--HHHHHHHHHHHHH-HHHHH-h------hchhhHHHHHHHHHHHHHhhhh
Q 014265 272 LYIDEFITSLAEIPGLLLAAILVDTAGRK--LSITIMFTLSCLF-LLPLV-T------YQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 272 ~~~~~~i~~~~~~~g~~~~~~l~d~~GRr--~~~~~~~~~~~~~-~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
.....++..+..++|.++.+++.||+|-| +++..+.....++ +.... . .++.+...++-.....+..+..
T Consensus 319 l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~q 398 (477)
T PF11700_consen 319 LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQ 398 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHH
Confidence 34556677788899999999999999999 6665554433222 22221 0 1223332333333344555667
Q ss_pred HhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHhhccCccCCcc
Q 014265 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ-MTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~l~pEtkg~~ 417 (427)
+..-.+.+|+-|+...+.-+|+....++..++++|.+.+.+.+..+. ...+....++.+++.+ .+...++.|++.
T Consensus 399 s~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~-ll~~v~~~~g~~ 474 (477)
T PF11700_consen 399 SASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLI-LLFFVDVEKGRE 474 (477)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH-HHhhccchhhhh
Confidence 88899999999999999999999999999999999999988777653 3445554555555544 445556777765
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.2e-13 Score=133.42 Aligned_cols=359 Identities=16% Similarity=0.094 Sum_probs=198.5
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhccchHHHHHH-HHHHhhhccccchh-hhhhhhhccCCCCchhHHHHHHHHHHHhH
Q 014265 25 LWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLIT-LRCLVGVGLGSGHV-FLSWFLEFVPPSNRGMWMVIFSSFWTIGS 102 (427)
Q Consensus 25 ~~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v-~R~l~Gi~~G~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~ 102 (427)
++|+|.|++.+...++..++-+++.|+++++++++ .=++.|+|.|..+. ....+. ...+|+|+.++++...+.++|.
T Consensus 105 ~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~ 183 (509)
T KOG2504|consen 105 CNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGT 183 (509)
T ss_pred HhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcce
Confidence 46999999999999999999999999999977655 55778888887643 333334 3356679999999999999999
Q ss_pred hHHHHHHHHhcCCCCchHHHHhhhHHHHHHH-HHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccccccc
Q 014265 103 VSEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 181 (427)
Q Consensus 103 i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~-~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~ 181 (427)
++-+.+.-.+....|||..+++.+...+-.. ......|.+|+-. +. +++. .++ .....+. .+...+.+.
T Consensus 184 ~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~--~~--~~~~--~~~-~~~~~~~---~~~~~~~~~ 253 (509)
T KOG2504|consen 184 VVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK--PN--EEKD--LRN-SAASVES---TPKPVELRI 253 (509)
T ss_pred eeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC--ch--hhhh--hcc-ccccccc---ccccccccc
Confidence 8878777777778999998776665543322 2233445454321 11 1111 111 0000000 000000000
Q ss_pred CCCCCCCCc----cchhhcccCCCCCccCCCchhhH--HHHhcCcchhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhccc
Q 014265 182 LPTGERAPP----ELVHLLSSNGGNKTTEGKSGLSL--FLMLFSSKLARTTILLWLL-LFGNSFAYYAVVLLISELSSLD 254 (427)
Q Consensus 182 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~-~~~~~~~~y~~~~~~~~l~~~~ 254 (427)
+.++..... +.....+.+++......+. ... -.++++. +..+.+.+ .....++++....+++......
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~ll~~----~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~ 328 (509)
T KOG2504|consen 254 SERDSGLKKLSLSNLATLKRGPDKWRNSPLQA-FLSMLDLSLLKD----PKFLLLALSNLFAYLGFNVPFVYLPSYAKSL 328 (509)
T ss_pred ccCCCCCCcccccchhhhhhCCccccccchhh-hhhhhhHHHHcC----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000000000 0000000000000000000 001 0122322 22222222 2233444544444555443210
Q ss_pred ccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhCh--hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 014265 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR--KLSITIMFTLSCLFLLPLVTYQSNILTTGLLFG 332 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GR--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (427)
..++........+.+..++.|-++.|++.|+... +.....+.+++++......+..+.+........
T Consensus 329 -----------g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~ 397 (509)
T KOG2504|consen 329 -----------GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSIL 397 (509)
T ss_pred -----------CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1122222333445677889999999999999874 344455566665555333332322221121222
Q ss_pred HHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhhcc
Q 014265 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
..++.....+....+..|+.+++.=+.+.|+...+.-++..++|-+.+++.+..+ ....+...+.+.++++++.++.+
T Consensus 398 fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 398 FGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 2222233334556799999999999999999999999999999988887766655 34456666777777766655553
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-13 Score=131.18 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=99.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHHHHHHhHhHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~ 105 (427)
||+|-|+++.++++.+++.+++.+++.++..+.+.|++.|++.|...+...|+.+|+|+++|++++++...+..+|.+++
T Consensus 87 DrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia 166 (511)
T TIGR00806 87 DYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLS 166 (511)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999888667889999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchHHH---HhhhHHHHHHHHHhhcccCchh
Q 014265 106 AIGAWIIMPRLDWRWLL---GLSSIPSFILLAFLGFQPESPR 144 (427)
Q Consensus 106 ~~~~~~~~~~~~WR~~~---~~~~i~~li~~~~~~~lpESP~ 144 (427)
++++.+ ...+|||... ++......+.+++-+++|--+|
T Consensus 167 ~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 167 SVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 988777 4467999864 3443344445555567884444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-12 Score=129.64 Aligned_cols=309 Identities=12% Similarity=0.036 Sum_probs=164.6
Q ss_pred hhcc-----chhHHHHHHHHHH-HHHHHhhccchHHHHHH-HHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHH
Q 014265 26 WQNL-----VRMGFLGEALVTA-GAGLLSSFSPNYITLIT-LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSF 97 (427)
Q Consensus 26 ~~~G-----Rk~~~~~~~~~~~-~~~~~~~~a~~~~~l~v-~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~ 97 (427)
||++ ||+.+.++.++.+ +.....+..++...+.+ ++++.+++.+.. .+.-.++.|..+ ++++...+..+..
T Consensus 85 D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~ 163 (468)
T TIGR00788 85 DTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWM 163 (468)
T ss_pred HhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHH
Confidence 4666 7777777776663 44334444456555444 888999887765 455688899998 5554433333333
Q ss_pred H---HHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcc
Q 014265 98 W---TIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGK 174 (427)
Q Consensus 98 ~---~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~ 174 (427)
| .+|.++++.++..+....+||..|++.+...++......++||.+.....+.+ ++........
T Consensus 164 ~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~-~~~~~~~~~~------------ 230 (468)
T TIGR00788 164 WGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIG-TYLEMNMALL------------ 230 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccccccccccc-ccchhhhhhh------------
Confidence 3 47888888888777777899999988777666655555677886421000000 0000000000
Q ss_pred cccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014265 175 LVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS-KLARTTILLWLLLFGNSFAYYAVVLLISELSSL 253 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~ 253 (427)
. . ...+ ...+........+++ ..++..+..++.+. ..+...+
T Consensus 231 -~-------------~---~~~~--------~~~~~~~~l~~~l~~~~i~~~l~fifl~~~-----------~~~~~~~- 273 (468)
T TIGR00788 231 -T-------------L---GVLA--------NVKVQILGLRGAIQLLEIAKPLIFIFLSYA-----------NLPGASG- 273 (468)
T ss_pred -h-------------h---hHHH--------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHh-----------hcCCCCc-
Confidence 0 0 0000 000001122222322 22221111111010 0010000
Q ss_pred cccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-h-c-------hhh
Q 014265 254 DTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-Y-Q-------SNI 324 (427)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~-~-~-------~~~ 324 (427)
..+.......+.+.........+.+++.+++..+.+.+.+|++.|+.+..+.++.+........ . . +..
T Consensus 274 --~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~ 351 (468)
T TIGR00788 274 --SVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDE 351 (468)
T ss_pred --eeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCe
Confidence 0000000011112222233344556777888888888889999999988877665544322110 0 0 111
Q ss_pred -HHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc
Q 014265 325 -LTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 325 -~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~ 387 (427)
.......+..+.....+.....+..++-|++.+++.+++.+++.++|+.+++.+.+.+.+..+
T Consensus 352 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 352 VFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred eeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111112222222233455678999999999999999999999999999999988777766544
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=135.16 Aligned_cols=117 Identities=12% Similarity=0.113 Sum_probs=95.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccc---------------------------------------------------hH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSP---------------------------------------------------NY 54 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~---------------------------------------------------~~ 54 (427)
||+|||+.+.++++++++++++.++.+ .+
T Consensus 93 ~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (633)
T TIGR00805 93 TKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMW 172 (633)
T ss_pred cccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCcee
Confidence 699999999999999999999887753 25
Q ss_pred HHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhHHHHHHHHhcCCC-----------------
Q 014265 55 ITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL----------------- 116 (427)
Q Consensus 55 ~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~~~~~~~~~~~~----------------- 116 (427)
.+++++|+++|+|.+... ...+|+.|++|+++|+++.++.+....+|..++.+++..+...+
T Consensus 173 ~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~d 252 (633)
T TIGR00805 173 LLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTD 252 (633)
T ss_pred hhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCC
Confidence 678899999999999875 45788999999999999999999999999999888776543211
Q ss_pred -----CchHHHHhhhHHHHHHHHHhhcccCc
Q 014265 117 -----DWRWLLGLSSIPSFILLAFLGFQPES 142 (427)
Q Consensus 117 -----~WR~~~~~~~i~~li~~~~~~~lpES 142 (427)
.||..|++.++.+++..+.++++||.
T Consensus 253 prWiGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 253 PRWIGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 27778888887777766555666665
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.6e-11 Score=111.56 Aligned_cols=274 Identities=13% Similarity=0.075 Sum_probs=155.5
Q ss_pred ccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhHHHHHHHHhcC--------------
Q 014265 50 FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-------------- 114 (427)
Q Consensus 50 ~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~~~~~~~~~~-------------- 114 (427)
...+|..++++-|+.|.|.+.. ..+.+|+..+.|++++.+.+++.+.++++|.+++++++..+..
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 4578999999999999999986 4678999999999999999999999999999999988765431
Q ss_pred --CCCchHHHHhhhHHHHHHHHHh--hcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCCCCCCCCc
Q 014265 115 --RLDWRWLLGLSSIPSFILLAFL--GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP 190 (427)
Q Consensus 115 --~~~WR~~~~~~~i~~li~~~~~--~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (427)
..+||.++++.+...++..+.+ ..+||... +|.+ + .+ ++
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~--------~~~~----~---~~------------------~~---- 128 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE--------ADVA----R---VS------------------SG---- 128 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc--------cccc----c---cc------------------cc----
Confidence 1479999885544433333222 23455210 0000 0 00 00
Q ss_pred cchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccCCCCCCh
Q 014265 191 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 270 (427)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 270 (427)
+..+ . +.+++. +...+..+..+.....--+...|.+....... ..+....+.
T Consensus 129 ------------~~~~------~-~~~~~~---~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~------~~g~s~~~a 180 (310)
T TIGR01272 129 ------------DTTQ------K-TSAFQF---THLVLGALGIFVYVGAEVSAGSFLVNFLSDPH------ALGLPEDQA 180 (310)
T ss_pred ------------cccc------h-hhHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cCCCCHHHH
Confidence 0000 0 001111 11111111111111111122223332221000 000011111
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhccc
Q 014265 271 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAE 350 (427)
Q Consensus 271 ~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 350 (427)
. ...........+|.++++.+.||+|+|+.+..+...+++..+......... .........++....++..+....+
T Consensus 181 ~--~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~ 257 (310)
T TIGR01272 181 A--HFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSLALN 257 (310)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 223334456678889999999999998887766655554443332222222 1222233345555667777888888
Q ss_pred ccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHH
Q 014265 351 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVV 393 (427)
Q Consensus 351 lfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~ 393 (427)
.+|.+ .+++.++. .++.+|+.+.|.+.+.+.+..+...+++
T Consensus 258 ~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 258 ALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred hhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 88875 34566664 6788999999999998877655444444
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-10 Score=116.35 Aligned_cols=339 Identities=14% Similarity=0.036 Sum_probs=171.5
Q ss_pred hccchhHHHHH-HHHHHHHHHHhhccchHHHHH------------HHHHHhhh-----ccccch-hhhhhhhhccCCCCc
Q 014265 27 QNLVRMGFLGE-ALVTAGAGLLSSFSPNYITLI------------TLRCLVGV-----GLGSGH-VFLSWFLEFVPPSNR 87 (427)
Q Consensus 27 ~~GRk~~~~~~-~~~~~~~~~~~~~a~~~~~l~------------v~R~l~Gi-----~~G~~~-~~~~~~~E~~p~~~R 87 (427)
|+|||+.+++. .+...++-++.+++++...+. +.+++.|+ +.+... ...+++.|.+|+++|
T Consensus 69 r~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~ 148 (477)
T TIGR01301 69 RFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR 148 (477)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH
Confidence 69999998885 555555556677777654222 24555555 333322 345678899999865
Q ss_pred --hhHHHHHHHHHHHhHhHHHHHHHHh--c---CC----------CCchHHHHhhhHHHHHH-HHHhhcccCchhHHhhc
Q 014265 88 --GMWMVIFSSFWTIGSVSEAIGAWII--M---PR----------LDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLK 149 (427)
Q Consensus 88 --g~~~~~~~~~~~iG~i~~~~~~~~~--~---~~----------~~WR~~~~~~~i~~li~-~~~~~~lpESP~~L~~~ 149 (427)
+.+.++.+.+.++|.+++..++.+. . +. .+-|..|++.++..++. ++..+..+|.|..- .
T Consensus 149 ~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~ 226 (477)
T TIGR01301 149 RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--S 226 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--c
Confidence 5788989999999999988876543 1 10 15688899887766554 44456788877311 1
Q ss_pred CchHHHHHHHHHHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcC-cchhhHHHH
Q 014265 150 GRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTIL 228 (427)
Q Consensus 150 gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 228 (427)
++.++ ++. ++.+++ +..+.....++.+.+ |+..++.+.
T Consensus 227 ~~~~~-----~~~---------------------~~~~~~---------------~~~~~~~~i~~~~~~mP~~m~~l~~ 265 (477)
T TIGR01301 227 DDFIN-----SEA---------------------APPSKH---------------GEEAFFGELFGAFKYLPRPVWILLL 265 (477)
T ss_pred ccchh-----hhc---------------------cccccc---------------chhhhHHHHHHHHHHCCHHHHHHHH
Confidence 00000 000 000000 000000011222222 333232222
Q ss_pred H-HHHHHHH-HHHHHHHHHHHHHhhcccccCCCCCccCCCCCCh---hHHHHHHHHHhhhhhHHHHHHHHHhhhC-hhHH
Q 014265 229 L-WLLLFGN-SFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA---NLYIDEFITSLAEIPGLLLAAILVDTAG-RKLS 302 (427)
Q Consensus 229 ~-~~~~~~~-~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~g~~~~~~l~d~~G-Rr~~ 302 (427)
. ++.|++. .+.+|.....-..+..... . .....++. + .....+.++...+..++--.+.+|+| ||..
T Consensus 266 vqffsW~a~f~~~~y~T~~vg~~v~~~~~-----~-~~~~y~~gvr~G-~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~ 338 (477)
T TIGR01301 266 VTCLNWIAWFPFILFDTDWMGREVYGGSV-----N-QGAKYDDGVRAG-AFGLMLNSVVLGITSIGMEKLCRGWGAGKRL 338 (477)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHcCCCC-----c-chhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 1 2223221 1112221111111111000 0 00000011 0 01122333333333444455677888 4677
Q ss_pred HHHHHHHHHHHHHHHHh-hc--h------------------hhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh--hH
Q 014265 303 ITIMFTLSCLFLLPLVT-YQ--S------------------NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR--ST 359 (427)
Q Consensus 303 ~~~~~~~~~~~~~~~~~-~~--~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R--~~ 359 (427)
+..+.++.+.++....+ .. + .+...+......+.....++++|+..+|.-|++-| |.
T Consensus 339 ~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~ 418 (477)
T TIGR01301 339 WGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL 418 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcc
Confidence 77775555544443322 11 0 01112222222233344567899999999996655 77
Q ss_pred HHHHHHHhhhHhHhhhHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 360 GAGAANAMGRIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 360 ~~g~~~~~~~~~~~i~p~~~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
-.|+-|.+-.+.-++.....+.+.+..+ ....+.+-++..+++++.+.++.|.++.
T Consensus 419 ~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 419 SMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 7788888877777777666555444433 2234444556667888888888888764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-13 Score=135.07 Aligned_cols=138 Identities=12% Similarity=-0.049 Sum_probs=99.8
Q ss_pred hhccchhHHHHHHHHHHHHHHH---hhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHH-HHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLL---SSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVI-FSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~---~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~-~~~~~~i 100 (427)
||+|||+.+..+.++..+++.. ...+++..+++++|++.|++.|... ....+..|++|++.||+..+. .+.+...
T Consensus 311 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~ 390 (490)
T PRK10642 311 DRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLV 390 (490)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHH
Confidence 5999999888776654433322 2345667888999999998876543 445667899999999988775 5555555
Q ss_pred hHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhc-----CchHHHHHHHHHHh
Q 014265 101 GSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLK-----GRTAEAHRALEKIA 163 (427)
Q Consensus 101 G~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~-----gr~~ea~~~l~~~~ 163 (427)
|.+...+.++......+|+.++++..+++++..+..+++||||+|+.+| ||.|||+++++|++
T Consensus 391 g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 391 AGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 5443333344433334688887777777777666667789999999865 99999999999885
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=115.58 Aligned_cols=112 Identities=19% Similarity=0.127 Sum_probs=98.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchh-hhhhhhhccCCC-CchhHHHHHHHHHHHhHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPS-NRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~-~~~~~~E~~p~~-~Rg~~~~~~~~~~~iG~i 103 (427)
||+|+|..++++.+.+..++++-+|..+|.++++.|.+||+|.....+ ..+.++.-+|++ +||+++++.-.+.++|.+
T Consensus 131 ~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~l 210 (464)
T KOG3764|consen 131 DRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVL 210 (464)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccce
Confidence 499999999999999999999999999999999999999999887654 467778888875 589999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhh
Q 014265 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG 137 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~ 137 (427)
+++..+..+....|.+.+|++.++..++-..+.+
T Consensus 211 vgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l 244 (464)
T KOG3764|consen 211 VGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQL 244 (464)
T ss_pred ecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHH
Confidence 9999998888888999999998887776555443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.8e-10 Score=111.82 Aligned_cols=296 Identities=11% Similarity=-0.011 Sum_probs=150.1
Q ss_pred hhhccchhh--hccchhH-HHHHHHHHHHHHHHhhccch------HHHHHHHHHHhhhccccch-hhhhhhhhcc-CCCC
Q 014265 18 FMFRLPHLW--QNLVRMG-FLGEALVTAGAGLLSSFSPN------YITLITLRCLVGVGLGSGH-VFLSWFLEFV-PPSN 86 (427)
Q Consensus 18 ~~~~~~~~~--~~GRk~~-~~~~~~~~~~~~~~~~~a~~------~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~-p~~~ 86 (427)
+++.++|-. |+|||+. ++.+....+++.++....|+ ...+++.-++.+.+..... +-.++..|+. ++++
T Consensus 64 ~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e 143 (444)
T PRK09669 64 LMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE 143 (444)
T ss_pred eeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH
Confidence 345555532 5999554 44566666666655555543 3445555555555433322 2345667998 4588
Q ss_pred chhHHHHHHHHHHHhHhHHHHHHHH----hc---CCCCchHHHHhhhHHHHHHHHHhh-cccCchhHHhhcCchHHHHHH
Q 014265 87 RGMWMVIFSSFWTIGSVSEAIGAWI----IM---PRLDWRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRA 158 (427)
Q Consensus 87 Rg~~~~~~~~~~~iG~i~~~~~~~~----~~---~~~~WR~~~~~~~i~~li~~~~~~-~lpESP~~L~~~gr~~ea~~~ 158 (427)
|++..+.-..+..+|..+++.+... .. ...+||..+.+.++.+++..+..+ ..+|.++ +
T Consensus 144 R~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~---------~---- 210 (444)
T PRK09669 144 RHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYT---------P---- 210 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecC---------C----
Confidence 9988888877777777665543322 21 135799887776665554433322 2222100 0
Q ss_pred HHHHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHH-HHHHH
Q 014265 159 LEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLL-LFGNS 237 (427)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~ 237 (427)
+ +++ + .+....++.+++++..+..+...++ +.+..
T Consensus 211 ----------~---------------~~~------------------~-~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~ 246 (444)
T PRK09669 211 ----------E---------------VDN------------------S-SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVV 246 (444)
T ss_pred ----------C---------------CcC------------------C-CCHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 0 000 0 0011233444544443333222211 11111
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH
Q 014265 238 FAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL 317 (427)
Q Consensus 238 ~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~ 317 (427)
... +.. ..+... .. ...+.. ........+..+++..+.+.+.||+|+|+.+..+.....+....+
T Consensus 247 ~~~-~~~---~y~~~~-------~~---~~~~~~-~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~ 311 (444)
T PRK09669 247 TRG-GAT---LYYVNY-------VL---LRPDLA-TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALI 311 (444)
T ss_pred HHh-hhh---heeeee-------ec---CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 110 110 111000 00 011111 111222234455677778899999999998877655443322222
Q ss_pred Hh-h-chhhHHHHHHHHHHHHHhhhhHhHHHhcccccc-------cchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 318 VT-Y-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYP-------TSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 318 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP-------t~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
.. . .+.+.......+..++........+.+.+|..+ .+..+..+|+.+.+.++|..++|.+.+.+++.
T Consensus 312 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 312 FFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1 222222222233333444455677888888886 34455667888888899999999988877754
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-09 Score=104.01 Aligned_cols=306 Identities=14% Similarity=0.131 Sum_probs=179.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSS---FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~---~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
+|+|+|+.+++++.+++++..+-. -..+|..++++-|+.|.|.|.. .++.+|+.-..|++.-..-+++.|.+.++|
T Consensus 73 kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lG 152 (422)
T COG0738 73 KKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLG 152 (422)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhH
Confidence 499999999999999999999884 5567899999999999999986 456889888888877666789999999999
Q ss_pred HhHHHHHHHH-hcC----------C--------CCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHH
Q 014265 102 SVSEAIGAWI-IMP----------R--------LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKI 162 (427)
Q Consensus 102 ~i~~~~~~~~-~~~----------~--------~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~ 162 (427)
.+++++++.. +.. . ..||.++...+....++.+.... .
T Consensus 153 a~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~---------~-------------- 209 (422)
T COG0738 153 AILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILL---------S-------------- 209 (422)
T ss_pred HHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh---------c--------------
Confidence 9988877543 321 1 12555554433222221111110 0
Q ss_pred hhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHH
Q 014265 163 AQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYA 242 (427)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~ 242 (427)
+.|+.+.. +.++ .+..+ ....++++.++.+...+...++.+.....+.
T Consensus 210 ------k~p~~~~~-----~~~~------------------~~~~~---~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gs 257 (422)
T COG0738 210 ------KLPDLQVA-----APSL------------------GASGS---AGLSSLFQNKHLRLGVLAIFLYVGAEVAIGS 257 (422)
T ss_pred ------cCCcCCcc-----cccc------------------ccccc---chHHHHHhChHHHHHHHHHHHHHhHHHHHHH
Confidence 00100000 0000 00000 0234566666655555555555554444332
Q ss_pred HHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhch
Q 014265 243 VVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS 322 (427)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~ 322 (427)
|.+..... ..+.+.++...+ ......+..+|-+++..++.|+...+.+.....+....++...+..+
T Consensus 258 ---fl~~y~~~--------~~g~~~~~aa~~--~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g 324 (422)
T COG0738 258 ---FLVSYLEE--------LLGLNEQQAAYY--LSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG 324 (422)
T ss_pred ---HHHHHHHh--------cCCccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22222110 001111222222 22334556778888888888998888877766555544444444333
Q ss_pred hhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 014265 323 NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTS 402 (427)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~ 402 (427)
.+ ....+.....+....|+..+....+..|.+ ....|..-.++-+||.+.|.+.+++.+..+....+...-.+|.+.
T Consensus 325 ~v-~~~~l~~ig~F~simfPTIfslal~~l~~~--ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~ly 401 (422)
T COG0738 325 VV-ALYALFLIGLFNSIMFPTIFSLALKNLGEH--TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLY 401 (422)
T ss_pred hH-HHHHHHHHHHHhHHHHHHHHHHHHhccCcc--ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 32 233344444556667888899999999933 333344455667899999999998877655443333333333333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.3e-09 Score=102.83 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=79.2
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHH----HHHHHhhhhHhHHHhcccc
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-QSNILTTGLLFG----ARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~El 351 (427)
.+..+.+++.....+.+..|+|-|+++..+.+..++=....... ++.+.......+ ........+.....|..|.
T Consensus 250 ~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~ 329 (400)
T PF03825_consen 250 ALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRI 329 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 35567788888889999999999999888776554434444433 333322222222 2222233456778999999
Q ss_pred cccchhhHHHHHHHHhhh-HhHhhhHHHHHHHHhhcch
Q 014265 352 YPTSVRSTGAGAANAMGR-IGGMVCPLVAVALVANCHQ 388 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~-~~~~i~p~~~~~l~~~~~~ 388 (427)
.|++.|+++.|+.+.+.. +|+.++.++.+++.+..+.
T Consensus 330 ~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 330 APPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred CCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988765 8999999999999887653
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-09 Score=107.99 Aligned_cols=108 Identities=13% Similarity=0.092 Sum_probs=66.4
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh----hch-hhHHHHHHHHHHHHHhhhhHhHHHhcccc-
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQS-NILTTGLLFGARMCVMGAFTVSLIYAAEI- 351 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El- 351 (427)
+..+..+++..+.+.+.||+|||+.+..+..+..+..+.... ..+ .+...+...+..+.....+...+++.+|.
T Consensus 274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~i 353 (473)
T PRK10429 274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTV 353 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334566777788899999999999987665543322222111 111 12222222222233344556778888888
Q ss_pred ----cccchhhHH--HHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 352 ----YPTSVRSTG--AGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 352 ----fPt~~R~~~--~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
+++..|..| +|+...+.+++..+++.+.+.+++.
T Consensus 354 d~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 354 DYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred hhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556665555 4666777889999999888877753
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.3e-09 Score=96.56 Aligned_cols=304 Identities=18% Similarity=0.158 Sum_probs=188.0
Q ss_pred hccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchh-hhhhhhhccCCCCchhHHHHHHHHHHHhHhHH
Q 014265 27 QNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 27 ~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~ 105 (427)
|+|-++.+..++++..++..+-... +...++.+=.+.|.|++...+ .+.++-|.+|+|. +.+++.+.....+|..++
T Consensus 73 ~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLa 150 (395)
T COG2807 73 RFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALA 150 (395)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHH
Confidence 6777889999999999999988877 788999999999999998765 4667789999874 567889999999988888
Q ss_pred HHHHHHhcCCC-CchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccccccCCC
Q 014265 106 AIGAWIIMPRL-DWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 106 ~~~~~~~~~~~-~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
+.++..+..+. +||....+=++|+++.++.+. |... |++ . .+..+
T Consensus 151 a~lavpla~~~~gW~~aL~~WAl~allAl~~Wl--Pq~~-------r~~-~-------~~~~~----------------- 196 (395)
T COG2807 151 AALAVPLAQHSGGWRGALGFWALLALLALLIWL--PQAL-------REQ-A-------ASIAT----------------- 196 (395)
T ss_pred hhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh--hhcc-------ccc-c-------ccccc-----------------
Confidence 87776665555 799999888999887776543 2111 110 0 00000
Q ss_pred CCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccC
Q 014265 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS 264 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 264 (427)
+.+++ ..+++.+ ..+.+.+.+--|+..||.+.-|+|.+....+.
T Consensus 197 -------------------~~~~~------~~vw~~~---~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~-------- 240 (395)
T COG2807 197 -------------------KLVSV------RKVWRSP---LAWQVTLFMGLQSLLYYIVIGWLPAILIDRGL-------- 240 (395)
T ss_pred -------------------ccccc------cccccCc---hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC--------
Confidence 00000 0122221 12223333345889999999999988643321
Q ss_pred CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHhhhhH
Q 014265 265 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVT-YQSNILTTGLLFGARMCVMGAFT 342 (427)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~-GRr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 342 (427)
+.........+..+.+.+..+..-.+.+|. ++|+........+......+.+ ..+..+..+ ++......+.++
T Consensus 241 ---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~--~llG~G~G~~F~ 315 (395)
T COG2807 241 ---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWA--LLLGLGQGGAFP 315 (395)
T ss_pred ---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHhCccchHHH
Confidence 111112223345567778888888888875 6666554433322221211111 121111111 222223344556
Q ss_pred hHHHhccccccc-chhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHh
Q 014265 343 VSLIYAAEIYPT-SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAV-VLLVVVIVTSILSVM 407 (427)
Q Consensus 343 ~~~~~~~ElfPt-~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~-~~~~~~~~i~~~~~~ 407 (427)
.....+..-.+. +.-+.-.|+...+|++-+.++|++.+++-+..+++.+. ..++...+...++-+
T Consensus 316 laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 316 LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 666655555444 66677789999999999999999999998887765433 334444444433333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-09 Score=107.96 Aligned_cols=299 Identities=18% Similarity=0.113 Sum_probs=168.6
Q ss_pred hhhhccchh--hhccchhHHH-HHHHHHHHHHHHhhcc-c-------hHHHHHHHHHHhhhccccchhh-hhhhhhccCC
Q 014265 17 IFMFRLPHL--WQNLVRMGFL-GEALVTAGAGLLSSFS-P-------NYITLITLRCLVGVGLGSGHVF-LSWFLEFVPP 84 (427)
Q Consensus 17 ~~~~~~~~~--~~~GRk~~~~-~~~~~~~~~~~~~~~a-~-------~~~~l~v~R~l~Gi~~G~~~~~-~~~~~E~~p~ 84 (427)
.+++..+|- .|+|||+..+ ++....+++.++.... | ....+.+.-++..++.....+. .++..|.++.
T Consensus 55 p~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~ 134 (428)
T PF13347_consen 55 PLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPD 134 (428)
T ss_pred CcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcccccc
Confidence 345555553 2899876655 5667777777766656 4 1223456666665555444433 4567899985
Q ss_pred -CCchhHHHHHHHHHHHhHhHHHHHHHHhc----C-C--CCchHHHHhhhHHHHHHHHH-hhcccCchhHHhhcCchHHH
Q 014265 85 -SNRGMWMVIFSSFWTIGSVSEAIGAWIIM----P-R--LDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEA 155 (427)
Q Consensus 85 -~~Rg~~~~~~~~~~~iG~i~~~~~~~~~~----~-~--~~WR~~~~~~~i~~li~~~~-~~~lpESP~~L~~~gr~~ea 155 (427)
++|.+..+.-+.+..+|.++.+.+...+. . . .+|++...+.++..++..+. .+..+|.+ .+.++.
T Consensus 135 ~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~------~~~~~~ 208 (428)
T PF13347_consen 135 PDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERS------VEVTEQ 208 (428)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecc------cccccc
Confidence 78999999988888888865544433322 1 1 27999988887776665444 34455500 000000
Q ss_pred HHHHHHHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHH-HH
Q 014265 156 HRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLL-LF 234 (427)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ 234 (427)
++ ..+....++.+++.+..+..++...+ +.
T Consensus 209 -------------------------------~~------------------~~~~~~~~~~~~~nr~~~~l~~~~~~~~~ 239 (428)
T PF13347_consen 209 -------------------------------EK------------------KISLRDSLRSLFRNRPFRILLLAFFLQWL 239 (428)
T ss_pred -------------------------------cc------------------ccccccchhhhcccchHHHHHHHHHHHHh
Confidence 00 00000123344544443333333222 22
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHH
Q 014265 235 GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFL 314 (427)
Q Consensus 235 ~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~ 314 (427)
+..+..-....+...... .... ......+..+..+++..+.+.+.||+|+|+.+..+..+.+...
T Consensus 240 ~~~~~~~~~~y~~~~vl~--------------~~~~-~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~ 304 (428)
T PF13347_consen 240 AFALMNTFLPYYFTYVLG--------------NEGL-ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF 304 (428)
T ss_pred hhhhhhhHHHHHHHHHhc--------------Cchh-hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence 222211111111121110 0111 1112234456667778888999999999999988877766555
Q ss_pred HHHHhh--chhhHHHHHHHHHHHHHhhhhHhHHHhccccccc-------chhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 315 LPLVTY--QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT-------SVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 315 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt-------~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
...... .+.+...+...+...+....+...+.+.+|+.+. +..|.-.|+.+...+++..+++.+.+.+++.
T Consensus 305 ~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 305 LLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred HHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 544432 2344434444444444455567788999998873 3456667888888899998998888777654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-08 Score=101.13 Aligned_cols=118 Identities=15% Similarity=0.030 Sum_probs=69.6
Q ss_pred hhhccchhh--hccchhHHHH-HHHHHHHHHHHhhccch------HHHHHHHHHHhhhccccchh-hhhhhhhccC-CCC
Q 014265 18 FMFRLPHLW--QNLVRMGFLG-EALVTAGAGLLSSFSPN------YITLITLRCLVGVGLGSGHV-FLSWFLEFVP-PSN 86 (427)
Q Consensus 18 ~~~~~~~~~--~~GRk~~~~~-~~~~~~~~~~~~~~a~~------~~~l~v~R~l~Gi~~G~~~~-~~~~~~E~~p-~~~ 86 (427)
++|.++|-. |+|||+..++ +....+++.++.-..|+ ...+.+.=++..++.-...+ -.++..|.++ +++
T Consensus 64 ~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e 143 (460)
T PRK11462 64 CMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ 143 (460)
T ss_pred hheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH
Confidence 355556643 7999766654 55666666665544443 22233333344433322222 2345679988 688
Q ss_pred chhHHHHHHHHHHHhHhHHHHHHHHh----cC---CCCchHHHHhhhHHHHHHHHH
Q 014265 87 RGMWMVIFSSFWTIGSVSEAIGAWII----MP---RLDWRWLLGLSSIPSFILLAF 135 (427)
Q Consensus 87 Rg~~~~~~~~~~~iG~i~~~~~~~~~----~~---~~~WR~~~~~~~i~~li~~~~ 135 (427)
|.+..++...+..+|..+++.+...+ .. ..+|+....+.++++++....
T Consensus 144 Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 144 RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999998888876665543322 11 136888777666665554433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=8e-10 Score=91.27 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=92.8
Q ss_pred hhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHH
Q 014265 282 AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA 361 (427)
Q Consensus 282 ~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~ 361 (427)
...++..+.+.+.||.|||+.+..+.....+..+......+.+...........+........+.+..|.+|++.|+++.
T Consensus 10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (141)
T TIGR00880 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVAL 89 (141)
T ss_pred HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHH
Confidence 44556778899999999999988766655544443333333332222223333333334567788999999999999999
Q ss_pred HHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 362 GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 362 g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
++.+...+++..++|.+.+.+.+..+....+.+.+.+.+++.+...++.|||
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 90 GLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999998877655444566666777777777777776775
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.9e-09 Score=98.73 Aligned_cols=148 Identities=19% Similarity=0.170 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcc
Q 014265 270 ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 349 (427)
Q Consensus 270 ~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (427)
.+.....+..++..++|+++.+++.||+|-|+++.++..+..+..+...+.........+-...+.+..+..+.+-.|-+
T Consensus 288 ~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~ 367 (438)
T COG2270 288 TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLA 367 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 44556667778889999999999999999998877766544333332222222211122223334456677888999999
Q ss_pred cccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCcc
Q 014265 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 350 ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~ 417 (427)
++.|++.-+.-+|+.+..+|.+++.+|++...+.+..+..-..+...++.+..++..+...|+.+.++
T Consensus 368 ~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~~~~~ 435 (438)
T COG2270 368 RLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVPGRRE 435 (438)
T ss_pred HhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCCCCcc
Confidence 99999999999999999999999999999887766665432233333333344445555555554443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-10 Score=93.37 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=99.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.....++.+...+++++..+.+.+++.|++.+... ....+..|..|+++|++..+..+....+|..+
T Consensus 23 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 102 (141)
T TIGR00880 23 DRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLL 102 (141)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHH
Confidence 69999999999999999999988899999999999999999988754 45677889999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHH-hhcccCc
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPES 142 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~-~~~lpES 142 (427)
++.+...+....+||..+.+.++..++.... .+..||+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 103 GPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 8888877777789999988877666554433 3445654
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-08 Score=99.67 Aligned_cols=105 Identities=12% Similarity=0.006 Sum_probs=66.6
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc-hh-hHHHHHHHHHHHHHhhhhHhHHHhccccccc----
Q 014265 281 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-SN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPT---- 354 (427)
Q Consensus 281 ~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt---- 354 (427)
+..+++..+.+.+.||+|+|+.+..+..+..+..+.+.... ++ +.......+..++........++..+|.-|.
T Consensus 275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~ 354 (448)
T PRK09848 275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL 354 (448)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 34456677788899999999988877665444333333322 12 2211212222233333445667777777764
Q ss_pred ---chhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 355 ---SVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 355 ---~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
+.++...|+.+....+|..+++.+.+.+++.
T Consensus 355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888998998999999999888777654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-09 Score=103.74 Aligned_cols=142 Identities=18% Similarity=0.080 Sum_probs=96.5
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....++..++.++.+.+.||+|||+.+..+....++..+......+.+......++..++..........+..|.+|++
T Consensus 46 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 125 (385)
T TIGR00710 46 LTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGE 125 (385)
T ss_pred HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH
Confidence 33445566778888999999999999988876665554444433333222222222222222334456788999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCcc
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~ 417 (427)
.|+++.|+.+....++..++|.+.+.+.+..+....+.+.+.+.++..+...+..||++.++
T Consensus 126 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (385)
T TIGR00710 126 ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE 187 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999999887776655445566666666666566666667775443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5e-09 Score=103.60 Aligned_cols=139 Identities=18% Similarity=0.105 Sum_probs=90.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....++..++.++.+.+.||+|||+.+..+.++..+..+......+.+...+..++..++..........+.+|.+|++
T Consensus 56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 135 (406)
T PRK11551 56 FSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR 135 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH
Confidence 34445666778889999999999999988876655444433333333222222222222223334456678999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.|+++.|+.+....+|+.++|.+...+.+..+-...+.+.+++.++..+....+.||+.
T Consensus 136 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 136 LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999988765555443334555555554544444444456764
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-09 Score=103.28 Aligned_cols=140 Identities=13% Similarity=0.054 Sum_probs=96.5
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
..+..+...++..+.+.++||+|||+.+..+....++.........+.+......++..++..........+.+|.+|++
T Consensus 35 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 114 (399)
T TIGR00893 35 FSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS 114 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH
Confidence 33455667778889999999999999888776665544444433333332222222333333334556788999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
.|+++.|+.+....+|+.++|.+.+.+.+..+....+.+.+.+.++..+...++.||++.
T Consensus 115 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 115 ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 999999999999999999999998877766554455666666666665555555556543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=103.35 Aligned_cols=182 Identities=13% Similarity=0.154 Sum_probs=103.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhC
Q 014265 219 SSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG 298 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~G 298 (427)
++++++.....+..++......+......|.+.... +.+............+...++.++.|++.||+|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G 99 (476)
T PLN00028 31 ARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNL-----------NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYG 99 (476)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455555566555555555555554445443211 111111112223344556778889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHH
Q 014265 299 RKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLV 378 (427)
Q Consensus 299 Rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~ 378 (427)
||+.+..+.+..++..+......+.......-++..++ .+.+.....+.+|.||++.|+++.|+.+..+.+|+.+++.+
T Consensus 100 ~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~-~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~ 178 (476)
T PLN00028 100 PRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFS-LATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLL 178 (476)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHH
Confidence 99988776665554444333322222211111122222 12233345578899999999999999999888888888776
Q ss_pred HHHHHhh---------cchhHHHHHHHHHHHHHHHHHhhccCc
Q 014265 379 AVALVAN---------CHQMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 379 ~~~l~~~---------~~~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
.+.+... .+-...+.+.+++.++..+...+++++
T Consensus 179 ~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 179 MPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 6544321 111245666666666655555555544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=101.29 Aligned_cols=137 Identities=10% Similarity=-0.063 Sum_probs=89.5
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhh
Q 014265 279 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 358 (427)
Q Consensus 279 ~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 358 (427)
..++..++.+..+.+.||+|||+.+..+.++.++......+..+.+...+.-++..++..+.......+.+|.+|++.|+
T Consensus 52 ~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg 131 (412)
T TIGR02332 52 FYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRA 131 (412)
T ss_pred HHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHH
Confidence 34455667788899999999999987776655544444433333222222222222333333455667899999999999
Q ss_pred HHHHHHHHhhhHhHhhhHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 359 TGAGAANAMGRIGGMVCPLVAVALVAN------CHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 359 ~~~g~~~~~~~~~~~i~p~~~~~l~~~------~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
++.|+.+....+|..++|.+.+++.+. .+-...+.+.++..++..++..++.||+..
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 132 RANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 999999999999999999988877642 222245556566655555555556677653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-08 Score=107.39 Aligned_cols=108 Identities=20% Similarity=0.203 Sum_probs=78.3
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..++.++|.++.|+++||+|||+.++.+.++.++..++..+..+.+...+.-++..++..+.....+.+.+|.+|++.
T Consensus 209 s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~ 288 (742)
T TIGR01299 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK 288 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 34456778889999999999999999888766555444443332222222233333344445556788999999999999
Q ss_pred hhHHHHHHHHhhhHhHhhhHHHHHHHHh
Q 014265 357 RSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~i~p~~~~~l~~ 384 (427)
|+...++.+.+..+|+++++.+...+..
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il~ 316 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAIIP 316 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887665553
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-07 Score=91.77 Aligned_cols=137 Identities=9% Similarity=0.048 Sum_probs=91.6
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+.+++.+.++..+++|+|-|+.++.+..+.++=....++..+.+.....=.+...-........+-|+++.||+++.
T Consensus 267 ~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rls 346 (412)
T PF01306_consen 267 VQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLS 346 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHH
Confidence 44566788888899999999999998887666554444444444443322221222221122334578899999999999
Q ss_pred hHHHHHHHHh-hhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 358 STGAGAANAM-GRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 358 ~~~~g~~~~~-~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+|...+...+ ..++.++.+.+.+++.+..|....+++.+.+.+...++..+..++.|
T Consensus 347 At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 347 ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 9999998655 46888888889999999887666788888887776666666654433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-08 Score=100.85 Aligned_cols=137 Identities=17% Similarity=0.125 Sum_probs=87.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..+...++..+.|.+.||+|||+.+..+....++..+......+.+......++...+....+.....+..|.+|++.
T Consensus 54 ~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 133 (405)
T TIGR00891 54 SAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL 133 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence 34456677788899999999999999887766555444443333322222222222223333344567888999999999
Q ss_pred hhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc-hh-HHHHHHHHHHHHHHHHHhhccCccC
Q 014265 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCH-QM-TAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~-~~-~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
|+++.|+.+....+|.+++|.+...+.+..+ .+ ..+.+.+...++. +......||++
T Consensus 134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~ 192 (405)
T TIGR00891 134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAE 192 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence 9999999999999999999988887766543 12 2333333333333 33334446754
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.3e-09 Score=101.48 Aligned_cols=136 Identities=14% Similarity=0.020 Sum_probs=87.6
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+...++..+.|.++||+|||+.+..+....++......+.++.+......................+.+|.+|++.|
T Consensus 51 ~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 130 (395)
T PRK10054 51 IALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSK 130 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHH
Confidence 33455667778899999999999988776665544444333333222211111111111122234567888999999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+++.|+.+....+|..++|.+.+.+.. .+...++.+.+++.+++.+...++.||++
T Consensus 131 ~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 131 TKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999887764 34345666666666665555544444543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-09 Score=103.81 Aligned_cols=137 Identities=20% Similarity=0.085 Sum_probs=91.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..++..++.++.+.+.||+|||+.+..+..+.++..+......+.+......++..++..........+.+|.+|++.|
T Consensus 60 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r 139 (398)
T TIGR00895 60 AGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFR 139 (398)
T ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhh
Confidence 44456677888899999999999998887766555444433333222222222222222233456778999999999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+++.|+.+....+|+.++|.+.+.+.+..+....+.+.+.+.++..+....+.||+.
T Consensus 140 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 140 GTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred chhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999888776654334455554455544455555556754
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.9e-09 Score=101.05 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=92.0
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+....+..+.|.++||+|||+.+..+.....+.........+.+.....-++...+....+...+.+.+|.+|++.|
T Consensus 46 ~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r 125 (392)
T PRK10473 46 VYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRR 125 (392)
T ss_pred HHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHH
Confidence 34455667778899999999999998877655544444333322222211211222222223345678899999999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCc
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 416 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~ 416 (427)
+++.++.+....+++.++|.+...+.+..+-...+.+.+.+.++..+..+...||++.+
T Consensus 126 ~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (392)
T PRK10473 126 AKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999998887666554433456666666666655555555777544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-07 Score=91.02 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=80.3
Q ss_pred hhc-cchhHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCC--CchhHHHHHHHHHHH
Q 014265 26 WQN-LVRMGFLGEALVTAGAGLLSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPS--NRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~-GRk~~~~~~~~~~~~~~~~~~~a~-~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~i 100 (427)
||+ |||+++.++.++..++.++.++.+ +...++++-.+.++|.|.. +...+++.|..|++ +|+...++......+
T Consensus 70 DRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nl 149 (493)
T PRK15462 70 DKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNV 149 (493)
T ss_pred HHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHH
Confidence 598 999999999999998887776543 2233444444555666654 34567789999986 688888888888889
Q ss_pred hHhHHHHHHHHhcCCCCchHHHHhhhHHHHH
Q 014265 101 GSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI 131 (427)
Q Consensus 101 G~i~~~~~~~~~~~~~~WR~~~~~~~i~~li 131 (427)
|..+++.+..++....|||..|.+.++..++
T Consensus 150 G~~iap~l~g~L~~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 150 GSIIAPIACGYAQEEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence 9999998888877778999999887654433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.3e-09 Score=103.48 Aligned_cols=166 Identities=14% Similarity=0.082 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh-ChhHHHHHH
Q 014265 228 LLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-GRKLSITIM 306 (427)
Q Consensus 228 ~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~-GRr~~~~~~ 306 (427)
.+...-+...+++|++..+++...... .+.+................++.+++|+++||+ |||+.+..+
T Consensus 13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~----------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG 82 (493)
T PRK15462 13 YVVALQIWEYFSFYGMRALLILYLTNQ----------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG 82 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 334444456778888877766554211 011111122222333345566778999999998 999998877
Q ss_pred HHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc--hhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 307 FTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS--VRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~--~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
.....+..+.+.... ........+.....+.....+....+.+|+||++ .|.+++++.++.+++|++++|.+.+++.
T Consensus 83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 766554443333221 1111111111111111112234578899999986 7999999999999999999999999887
Q ss_pred hhcchhHHHHHHHHHHHHHH
Q 014265 384 ANCHQMTAVVLLVVVIVTSI 403 (427)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~ 403 (427)
+..+-...+.+.++.++++.
T Consensus 163 ~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 163 EEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred hhhChHHHHHHHHHHHHHHH
Confidence 76554444555444334443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-08 Score=97.29 Aligned_cols=138 Identities=19% Similarity=0.064 Sum_probs=93.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....+...++..+.|.++||+|||+.+..+....++......+..+.+......++..++..........+..|.+|++
T Consensus 38 ~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~ 117 (352)
T PF07690_consen 38 FSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPE 117 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhh
Confidence 34445667788889999999999999888877766655333333233232222223333333445567889999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
.|+++.|+.+....+|..++|.+.+.+.+..+....+++.+.+.+++.++...+.+|+
T Consensus 118 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 118 ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred hhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhc
Confidence 9999999999999999999999988776554434567777777777666443443433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-08 Score=100.96 Aligned_cols=137 Identities=12% Similarity=0.036 Sum_probs=90.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
....++..++.++.+++.||+|||+.+..+.+..++..+......+.+......++..++....+.....+.+|.+|++.
T Consensus 65 ~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 144 (434)
T PRK11663 65 TLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE 144 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH
Confidence 34455667788899999999999999888777666555544333322222121122222223334567788999999999
Q ss_pred hhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
|+++.|+.+..+.+|+.++|.+.+.+.+..+-...+.+.+++.++..+...++.||+
T Consensus 145 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 145 RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999888877665544455555555444333333333443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-08 Score=88.87 Aligned_cols=122 Identities=14% Similarity=0.095 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhhhChhHHHHHHHHHHHHH-HHHHHhh-chhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHH
Q 014265 285 PGLLLAAILVDTAGRKLSITIMFTLSCLF-LLPLVTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAG 362 (427)
Q Consensus 285 ~g~~~~~~l~d~~GRr~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g 362 (427)
+..-+.|.++||.||+...+.+..+..+. -..+.+. .+++....++ ..... . .....|...+.+.|.+--+|++|
T Consensus 315 v~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~l-GLsys-l-lAcslWP~va~~vpE~qLGTayg 391 (459)
T KOG4686|consen 315 VLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFL-GLSYS-L-LACSLWPCVASLVPEEQLGTAYG 391 (459)
T ss_pred hhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHH-hhhHH-H-HHHHHhhhhhhhCCHHHhcchHH
Confidence 34456789999999998877654433322 1112221 1223222211 11111 1 12346777888899999999999
Q ss_pred HHHHhhhHhHhhhHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHhhc
Q 014265 363 AANAMGRIGGMVCPLVAVALVANCHQ----MTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 363 ~~~~~~~~~~~i~p~~~~~l~~~~~~----~~~~~~~~~~~~i~~~~~~~l 409 (427)
++.+..++|-.+.|.+.+.+.+.-++ ...++.++.+.++...+.+.+
T Consensus 392 f~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 392 FIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 99999999999999998866654331 223344555555554444444
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-08 Score=99.52 Aligned_cols=139 Identities=18% Similarity=0.058 Sum_probs=92.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
....++..++..+.|.++||+|||+.+..+....++.........+.+......++............+.+..|.+|++.
T Consensus 55 ~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 134 (406)
T PRK15402 55 TAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD 134 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH
Confidence 34445566777889999999999999887766555444443333322221121122222222223456788899999999
Q ss_pred hhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
|.++.++......++..++|.+...+.+..+-...+.+.+++.+++.+..++..||++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 135 AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999888888899999988877665443456666676666666655555678754
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-08 Score=101.40 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=97.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhCh
Q 014265 220 SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR 299 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GR 299 (427)
+.+++....++..++...+.++......|.+.... +.+............++..++.++.+.+.||+||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 84 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEF-----------GLTTVQAASLISAAFISRWFGGLLLGAMGDRYGR 84 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34444444555555555555555554555543211 1111111222333445667788899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHH
Q 014265 300 KLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA 379 (427)
Q Consensus 300 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~ 379 (427)
|+.+..+....++..+......+.+...+..++..++..+.+.....+..|.+|.+.|+.+.++.+....+|++++|.+.
T Consensus 85 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 85 RLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988776665554444433333222222222333333344566788899999999999999999999999999999998
Q ss_pred HHHHhhcc
Q 014265 380 VALVANCH 387 (427)
Q Consensus 380 ~~l~~~~~ 387 (427)
+.+.+..+
T Consensus 165 ~~l~~~~~ 172 (496)
T PRK03893 165 SLVVPVWG 172 (496)
T ss_pred HHHhccCC
Confidence 87776544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.2e-08 Score=96.77 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=82.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...++..++.++.+.+.||+|||+.+..+.+..++.........+.+...+..++..++.....+....+.+|.+|++.|
T Consensus 50 ~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r 129 (394)
T PRK03699 50 FLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQR 129 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchH
Confidence 34456677888999999999999998877665554444433333322222222222222223344567888999999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHH
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILS 405 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~ 405 (427)
+.+.++.+....+++.++|.+...+.... +-..++.+.+.+.++..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 130 GSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 99999998888889999998887776542 2233455555554444333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-08 Score=99.96 Aligned_cols=181 Identities=11% Similarity=-0.016 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHH
Q 014265 223 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS 302 (427)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~ 302 (427)
+++.+.++..++.+.+..+....+.|.+.... +.+............+...++..+.+.+.||+|||+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 77 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSL-----------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNI 77 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 34455555555556666666665666654211 1111111111223344556778889999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHH
Q 014265 303 ITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l 382 (427)
+..+..+.+...+......+.+.....-.+..++.....+....+..|.+|++.|+++.|+.+....+|..++|.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l 157 (471)
T PRK10504 78 FFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLL 157 (471)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 88766555444333333222222112222222222233456778889999999999999999999999999999998888
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 383 VANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.+..+-...+.+...+..++.+......|+.+
T Consensus 158 ~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 158 VEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 77654334555555555555555555555543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-07 Score=93.47 Aligned_cols=293 Identities=19% Similarity=0.147 Sum_probs=157.8
Q ss_pred hccchhHH-HHHHHHHHHHHHHhhccchHH------HHHHHHHHhhhccccchh-hhhhhhhccCC-CCchhHHHHHHHH
Q 014265 27 QNLVRMGF-LGEALVTAGAGLLSSFSPNYI------TLITLRCLVGVGLGSGHV-FLSWFLEFVPP-SNRGMWMVIFSSF 97 (427)
Q Consensus 27 ~~GRk~~~-~~~~~~~~~~~~~~~~a~~~~------~l~v~R~l~Gi~~G~~~~-~~~~~~E~~p~-~~Rg~~~~~~~~~ 97 (427)
|+||++.. +++.+..++...++-.+++.. ..++--.+.|++--...+ -.++..|+++. ++|.+..+.-+.+
T Consensus 78 r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~ 157 (467)
T COG2211 78 RWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVF 157 (467)
T ss_pred ccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHH
Confidence 79996555 456688888888887777422 233344444443222211 12344688775 8899999999999
Q ss_pred HHHhHhHHHHHHHHh----c-C--CCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCC
Q 014265 98 WTIGSVSEAIGAWII----M-P--RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKL 170 (427)
Q Consensus 98 ~~iG~i~~~~~~~~~----~-~--~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~ 170 (427)
..+|.++.+.+...+ . + ..||+..-.+.++.+.+..++.++ ..|.|..|+.
T Consensus 158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~--------~v~ER~~~~~-------------- 215 (467)
T COG2211 158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFF--------NVKERVVETQ-------------- 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH--------HhhcccCccc--------------
Confidence 999987666554332 1 1 458998877777776666555432 1222221100
Q ss_pred CCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 014265 171 PNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWL-LLFGNSFAYYAVVLLISE 249 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~y~~~~~~~~ 249 (427)
+ . +++........+..+++++.++..+...+ .+.+.++..-....+...
T Consensus 216 ~------------~------------------~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y 265 (467)
T COG2211 216 P------------T------------------KTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTY 265 (467)
T ss_pred c------------C------------------cccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEE
Confidence 0 0 00000000112333455444333332222 222222211111111111
Q ss_pred hhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc--hhhHHH
Q 014265 250 LSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ--SNILTT 327 (427)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 327 (427)
. .+..+...+.......+..+.+.++.-.+.+|+|+|+++.++.++.++.-..+.+.. +.+...
T Consensus 266 ~--------------lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~ 331 (467)
T COG2211 266 V--------------LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIV 331 (467)
T ss_pred E--------------cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHH
Confidence 1 112222223334444455555567778899999999999888766655544444322 223333
Q ss_pred HHHHHHHHHHhhhhHhHHHhccccc-----ccchhhHHH--HHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 328 GLLFGARMCVMGAFTVSLIYAAEIY-----PTSVRSTGA--GAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~Elf-----Pt~~R~~~~--g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
+..++..........+.|+..+|.- -|..|..|. |...++..+|..++..+.+.+++.
T Consensus 332 ~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 332 VALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred HHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556678888888774 456665554 555677788888888777776654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-08 Score=96.33 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=91.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...+...++..+.+.+.||+|||+.+..+..+.++..+......+.+.....-....++..........+.+|.+|++.|
T Consensus 63 ~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~ 142 (394)
T PRK10213 63 VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTV 142 (394)
T ss_pred HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHH
Confidence 33455666778889999999999999887776655444433333223222222222233333455677888999999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+.+.++......++..++|.+.+.+.+..+-...+.+.+.+.+++.+......||++
T Consensus 143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999988877655444555555555554444444456754
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.7e-08 Score=94.01 Aligned_cols=133 Identities=13% Similarity=-0.022 Sum_probs=86.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc-----hhhHHHHHHHHHHHHHhhhhHhHHHhcccc
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-----SNILTTGLLFGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 351 (427)
.+..+...++..+.|.+.||+|||+.+..+..+............ +.+...+...+..++.....+....+.+|.
T Consensus 41 ~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 120 (365)
T TIGR00900 41 LAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDL 120 (365)
T ss_pred HHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344456667778889999999999998877665444333322211 222222222222233333445678899999
Q ss_pred cccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014265 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
+|++.|++..|+.+....+|.+++|.+.+.+.+..+....+.+.+...+++.+....+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 121 VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998887766543444555454444444444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-08 Score=97.52 Aligned_cols=136 Identities=15% Similarity=0.059 Sum_probs=91.1
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhH
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
.++..++.++.|.++||+|||+.+..+..+.++..+.....++.+...+.-++..++........+.+..|.+|++.|++
T Consensus 61 ~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
T PRK15403 61 LAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIK 140 (413)
T ss_pred HHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 45556777889999999999999887766555444433333332222222122222222223456788999999999999
Q ss_pred HHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 360 ~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
+.++.+....++..++|.+.+.+.+..+-...+++.+++.+++.+...+..|||+.
T Consensus 141 ~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 141 LMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999988877665443456666666666666555555678754
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-08 Score=101.00 Aligned_cols=139 Identities=14% Similarity=0.012 Sum_probs=93.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
....++..++..+.+.+.||+|||+.+..+..+..+..+......+.......-++..++..........+..|.+|++.
T Consensus 44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 123 (485)
T TIGR00711 44 TSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK 123 (485)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH
Confidence 34456667788899999999999999888766555444433332222221222222222223344567889999999999
Q ss_pred hhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
|+++.++......+|..++|.+.+.+.+..+-...+++.+.+.+++.+...++.||++.
T Consensus 124 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 124 RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 99999999999999999999998887765543345555555555555555555566543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-08 Score=97.54 Aligned_cols=111 Identities=17% Similarity=0.118 Sum_probs=78.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..+...++..+.+.+.||+|||+.+..+....++.........+.+...+.-++..++..+.+.....+.+|.+|++.
T Consensus 60 ~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~ 139 (426)
T PRK12307 60 TAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH
Confidence 34456667788889999999999999988776665554443333333222222222223333445667888999999999
Q ss_pred hhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc
Q 014265 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~ 387 (427)
|+++.|+......+|.+++|.+.+.+.+..+
T Consensus 140 r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~ 170 (426)
T PRK12307 140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAYG 170 (426)
T ss_pred hhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence 9999999998888999999988876665543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-07 Score=93.83 Aligned_cols=134 Identities=7% Similarity=-0.053 Sum_probs=88.3
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhH
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
.+...++....+.+.||+|||+.+..+....++.........+.+...+.-.+........++....+.+|.+|.+.|++
T Consensus 54 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~ 133 (390)
T PRK03545 54 AWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQ 133 (390)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhh
Confidence 34445666778999999999999988766655544443333332222222122222222233456788899999999999
Q ss_pred HHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 360 ~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+.|+......++..++|.+...+.+..+-...+.+.+.+.++..+......||.
T Consensus 134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 134 ALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999888776665544566666666665555544444554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.1e-08 Score=97.90 Aligned_cols=107 Identities=19% Similarity=0.157 Sum_probs=74.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhch------hhHHHHHHHHHHHHHhhhhHhHHHhcc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS------NILTTGLLFGARMCVMGAFTVSLIYAA 349 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (427)
.....++..++.++.+.+.||+|||+.+..+.++..+..+......+ .....+.-++..++..+.++....+.+
T Consensus 62 ~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~ 141 (502)
T TIGR00887 62 NGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITS 141 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34445667788899999999999999987766555444333332211 111122222333344445567899999
Q ss_pred cccccchhhHHHHHHHHhhhHhHhhhHHHHHHH
Q 014265 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 350 ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l 382 (427)
|.+|++.|+++.++.+....+|..+++.+...+
T Consensus 142 e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 142 EFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888776544
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.9e-08 Score=95.94 Aligned_cols=138 Identities=13% Similarity=0.030 Sum_probs=80.6
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc---hhh-HHHHHHHHHHHHHhhhhHhHHHhccccc
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---SNI-LTTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
....+...++..+.|.++||+|||+.+..+..+.++..+...... .+. ...+..++..++....++.......|.+
T Consensus 70 ~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~ 149 (452)
T PRK11273 70 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW 149 (452)
T ss_pred HHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhC
Confidence 344556677888999999999999998887766554444333211 111 1112222222222223344556778999
Q ss_pred ccchhhHHHHHHHHhhhHhH-hhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 353 PTSVRSTGAGAANAMGRIGG-MVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~-~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
|++.|+++.|+.+....+|+ +.+|.+...+....+-...+++.+.+.++..+...++.||+.
T Consensus 150 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 150 SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 99999999999888888876 445554322222212123455555555554445545545643
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-08 Score=95.44 Aligned_cols=138 Identities=16% Similarity=0.056 Sum_probs=94.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...++...+.++.+.++||+|||+.+..+....++.........+.+......++..++..........+..|.+|++.|
T Consensus 34 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
T PRK11102 34 AYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEF 113 (377)
T ss_pred HHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34455667788899999999999998887766655544443333322222222222233233344667899999999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
+++.++.+....+++.++|.+.+.+.+..+....+.+.+.+.++..+...+..||++.
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (377)
T PRK11102 114 SRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLP 171 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 9999999999999999999998877765544455666666666665555555567643
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=99.55 Aligned_cols=137 Identities=14% Similarity=0.059 Sum_probs=88.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..+...++.++.+.++||+|||+.+..+.+..++..+......+.+...+..++..++..........+.+|.+|++.
T Consensus 37 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 116 (379)
T TIGR00881 37 SSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE 116 (379)
T ss_pred HHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh
Confidence 34456667788889999999999999888776665554444333332222222222222223344567889999999999
Q ss_pred hhHHHHHHHHhhhHhHhhhH-HHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 357 RSTGAGAANAMGRIGGMVCP-LVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~i~p-~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
|+++.|+.+....+|+.++| .+...+....+....+.+.+.+.++..+...++.||+
T Consensus 117 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 117 RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 99999999999999999998 4544444433333445555555555445555554554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=91.29 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=72.8
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
....++..++.++.+.++||+|||+.+..+.++.++..+...... +.+......+..... .+.+.....+.+|.+|++
T Consensus 44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~ 122 (366)
T TIGR00886 44 AVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWISFFFPKK 122 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHHHHhcCHh
Confidence 344556677888999999999999998887766655544443333 222211211221122 233455677899999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHh
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~ 384 (427)
.|+++.++....+.+|..+++.+.+.+..
T Consensus 123 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 123 IQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999998888888888777766554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=96.16 Aligned_cols=171 Identities=15% Similarity=0.025 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhh-hChhHHHHHH
Q 014265 228 LLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLSITIM 306 (427)
Q Consensus 228 ~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~-~GRr~~~~~~ 306 (427)
.++...+...++||+...+++....... ..+.+................++.+++|++.|| +|||+.+..+
T Consensus 14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~--------~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 14 TLFFVELWERFSYYGMQGILAVYLVQQA--------GLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 3444455677888887776665432110 001111111222333445667788899999999 8999999888
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch---hhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 307 FTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV---RSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~---R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
..+.++..+.+....+.........+...+.....+....+.+|.+|++. |+++.++.+...++|+.++|.+.+++.
T Consensus 86 ~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 86 GIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 77666555444433222221111112222222233456788899998864 999999999999999999999999887
Q ss_pred hhcchhHHHHHHHHHHHHHHHHH
Q 014265 384 ANCHQMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~~~~ 406 (427)
+..+....+...++.++++.+..
T Consensus 166 ~~~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 166 ENYGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred HhcChHHHHHHHHHHHHHHHHHH
Confidence 76554445555554444444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=92.75 Aligned_cols=135 Identities=16% Similarity=0.054 Sum_probs=88.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+...++..+.|.+.||+|||+.+..+....+...+......+.+..........++ .+.......+..|.+|++.|
T Consensus 62 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~ 140 (408)
T PRK09874 62 ITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL-GGFVPNANALIATQVPRNKS 140 (408)
T ss_pred HHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hhhHHhHHHHHHHhcCHhhh
Confidence 34455566777889999999999998876655544443333322222211111111121 22334456678899999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+.+.|+.+....+|.+++|.+.+.+.+..+....+.+.+.+.+++.+...++.||+
T Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999988777655544566666666666655555555554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-07 Score=91.35 Aligned_cols=139 Identities=14% Similarity=0.016 Sum_probs=86.6
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
....+...++..+.|.++||+|||+.+..+.....+..+......+.+......++..++..........+..|.+|.+.
T Consensus 50 ~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 129 (394)
T PRK11652 50 AAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ 129 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH
Confidence 34455667778889999999999998887766554444433332222221111121112212223455677889999999
Q ss_pred hhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
|+.+.++.+....++..++|.+.+.+.+..+-...+.+.+.+.++..+...++.||++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 99999998888888888999888877665443345555555554444444445567643
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.8e-07 Score=92.80 Aligned_cols=135 Identities=16% Similarity=0.044 Sum_probs=86.3
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhccccc-ccchhhH
Q 014265 281 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY-PTSVRST 359 (427)
Q Consensus 281 ~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-Pt~~R~~ 359 (427)
+....+....|.++||+|||+.+..+..+..+..+......+.+...+.-.+..++..+..........+.+ |++.|++
T Consensus 52 l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~ 131 (495)
T PRK14995 52 LVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNM 131 (495)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344556678899999999999998877666554444333332222212112222222222333445555665 7899999
Q ss_pred HHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 360 ~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
+.|+......+|..++|.+.+.+.+..+-.+.+++...+.+++.+...++.||.++
T Consensus 132 ~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 132 ALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999988776543455666555556655555555566543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=94.60 Aligned_cols=138 Identities=17% Similarity=0.086 Sum_probs=86.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc---hhhHHH-HHHHHHHHHHhhhhHhHHHhccccc
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---SNILTT-GLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
.+..++..++.++.+.+.||+|||+.+..+.++.++..+...... ++.... +...+..++....++.......|.+
T Consensus 68 ~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~ 147 (438)
T TIGR00712 68 SAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWW 147 (438)
T ss_pred HHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhc
Confidence 344566677888899999999999988776655554444332211 111111 1111222222223445667788999
Q ss_pred ccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
|++.|+++.|+.+....+++.++|.+...+.+.. +-...+++.+.+++++.+...++.||++
T Consensus 148 ~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 148 SQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred CcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 9999999999999999999988887766544432 2224556666666665555555556643
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-07 Score=90.78 Aligned_cols=138 Identities=10% Similarity=0.039 Sum_probs=91.6
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
....++..++..+.+.+.||+|||+.+..+..+.++..+......+.+...+.-.+..++..........+..|.+|++.
T Consensus 45 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 124 (382)
T PRK10091 45 SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK 124 (382)
T ss_pred HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH
Confidence 34456677888899999999999999988777666555544443333322222222222222233455677899999999
Q ss_pred hhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
|+.+.+.......++..++|.+...+.+..+-...+.+.+.+.++..+...+..||.+
T Consensus 125 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 125 VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999988888999999888777666544445666666655555555555556754
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-07 Score=89.82 Aligned_cols=133 Identities=8% Similarity=-0.082 Sum_probs=86.4
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhH
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
.+.......+.|.++||+|||+.+..+.....+..+.....++.+.......+..+...........+..|.+|++.|++
T Consensus 56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (400)
T PRK11646 56 QFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR 135 (400)
T ss_pred HHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34444556778999999999999988777666555544443333322222222222211123445778899999999999
Q ss_pred HHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 360 ~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+.|+.+....+|..++|.+.+.+. ..+....+.+.+.+.+++.+......||.
T Consensus 136 a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 136 FFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999998877 43433455555555555544444444553
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-07 Score=89.11 Aligned_cols=131 Identities=22% Similarity=0.137 Sum_probs=88.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....+...++..+.|.+.||+|||+.+..+.....+..+......+.+.......+...+..........+.+|.+|++
T Consensus 40 ~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 119 (352)
T cd06174 40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc
Confidence 34455667778889999999999999888777666555544433332222222222222222334567789999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 406 (427)
.|+++.++.+....+|+.++|.+.+.+.+..+....+.+.+.+.+++.+..
T Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL 170 (352)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887766543344555555544444443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.6e-07 Score=88.05 Aligned_cols=329 Identities=14% Similarity=0.104 Sum_probs=175.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccch------HH--HHHHHHHHhhhccccchhhhh-hhhhccCCCCchhHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPN------YI--TLITLRCLVGVGLGSGHVFLS-WFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~------~~--~l~v~R~l~Gi~~G~~~~~~~-~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|-|.+.+++..+..++..+-..+.. +. ....+..+.+.+--......+ ...-|+|+++|..+...-..
T Consensus 104 dk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~ 183 (480)
T KOG2563|consen 104 DKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVM 183 (480)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHh
Confidence 6999999999999999999987765432 22 444566655554222122222 23467899999999888877
Q ss_pred HHHHhHhHHHHHHHHhcCC------CCchHH--HH-hhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcC
Q 014265 97 FWTIGSVSEAIGAWIIMPR------LDWRWL--LG-LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNK 167 (427)
Q Consensus 97 ~~~iG~i~~~~~~~~~~~~------~~WR~~--~~-~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~ 167 (427)
.-++|..++.++...+.+. ..|... |+ +.++-.+.+.+..+..+|-|+.= ...+...
T Consensus 184 ~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP-----ps~s~~~--------- 249 (480)
T KOG2563|consen 184 GNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP-----PSASQAA--------- 249 (480)
T ss_pred cchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CchhHhh---------
Confidence 7778888777666554332 358774 44 22222222222222222222210 0000000
Q ss_pred CCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014265 168 TKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 247 (427)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 247 (427)
..+.+-....+.+++.+ +.++..+.+......+|+....+
T Consensus 250 -------------------------------------~~~~~f~~si~~~~~n~---~F~il~~~ygi~~g~F~~l~~~l 289 (480)
T KOG2563|consen 250 -------------------------------------LQDASFPKSIKSCFKNR---QFIILAICYGIGLGLFNSLSTLL 289 (480)
T ss_pred -------------------------------------hhcCcHHHHHHHHHcCc---cHHHHHHHHhhhHHHHHHHHHHh
Confidence 00001123444555442 23333333333444455554433
Q ss_pred H-HhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhCh-hHHHHHHHHHHHHHHHH-HHhhc---
Q 014265 248 S-ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR-KLSITIMFTLSCLFLLP-LVTYQ--- 321 (427)
Q Consensus 248 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GR-r~~~~~~~~~~~~~~~~-~~~~~--- 321 (427)
. .+.-. +..+... ..-..+....+.+|+++++.+.||... |...++.+......... .....
T Consensus 290 ~~~l~~s----------gY~~~~a--G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~ 357 (480)
T KOG2563|consen 290 NLALCPS----------GYEGVFA--GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLG 357 (480)
T ss_pred hhccccc----------cCCcccc--chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3 22110 1111111 122334455677888999999999744 44555544444333221 11111
Q ss_pred hhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc----hhHHHHHHHH
Q 014265 322 SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH----QMTAVVLLVV 397 (427)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~----~~~~~~~~~~ 397 (427)
..+..........++..+...+..-+..|.-=+..=++..|+.+..+++-+++-.++.....+..+ .....+....
T Consensus 358 ~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 437 (480)
T KOG2563|consen 358 DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTV 437 (480)
T ss_pred ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHH
Confidence 112212222223334455556677788888444555667799999999999888888877766544 2223345555
Q ss_pred HHHHHHHHHhhccCccCCccccc
Q 014265 398 VIVTSILSVMLIPFETKGQELSD 420 (427)
Q Consensus 398 ~~~i~~~~~~~l~pEtkg~~l~e 420 (427)
.+.+..+.+.++.|+-+.+..|+
T Consensus 438 ~~~l~~~lva~~r~~y~R~~~e~ 460 (480)
T KOG2563|consen 438 SALLGAILVAFFRPDYRRLRAEA 460 (480)
T ss_pred HHHHHHHHHhhhhhhHHhHhhhh
Confidence 55566666777777766655554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.5e-07 Score=88.94 Aligned_cols=137 Identities=18% Similarity=0.112 Sum_probs=88.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..+...++.++.+.++||+|||+.+..+..+..+..+......+.+......++..++..........+..|.+|.+.
T Consensus 48 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 127 (401)
T PRK11043 48 SLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK 127 (401)
T ss_pred HHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH
Confidence 34455567788899999999999999887766555444433332222221111112112212222344567889999999
Q ss_pred hhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
|+...+..+....+++.++|.+.+++.+..+-...+.+.+.+.++..+....++||.
T Consensus 128 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
T PRK11043 128 ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK 184 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999998888899999999988887765544556666666666555555555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.8e-07 Score=89.53 Aligned_cols=134 Identities=13% Similarity=0.035 Sum_probs=81.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
..+..+...++..+.|.+.||+|||+.+..+.++.++..+......+.+..........++....+........|.+| +
T Consensus 44 ~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~ 122 (377)
T TIGR00890 44 FTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-D 122 (377)
T ss_pred HHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-c
Confidence 334456667788889999999999999888776655544443333322221121112222222233445566778887 4
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
.|+++.++......+|..+++.+...+.+..+-...+.+.+++.++..+..+++.
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 123 KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 6999999998888888877655555555444333456666666655555544443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.3e-07 Score=89.03 Aligned_cols=136 Identities=15% Similarity=0.080 Sum_probs=84.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---hh-chh-hHHHHHHHHHHHHHhhhhHhHHHhcccc
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---TY-QSN-ILTTGLLFGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~---~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El 351 (427)
....+...++..+.|.++||+|||+.+..+....++...... +. .++ +...+..+...++..........+.+|.
T Consensus 59 ~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 138 (417)
T PRK10489 59 TLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPAL 138 (417)
T ss_pred HHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 344556677788899999999999988766554443332221 11 122 1111111111122122234567789999
Q ss_pred cccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+|++.|+++.++.+....+|..++|.+.+.+.+..+....+.+.+...+++.+....+ ||+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 199 (417)
T PRK10489 139 VGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PAL 199 (417)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence 9999999999999999999999999998877765444445555555555554444444 454
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-06 Score=85.91 Aligned_cols=132 Identities=11% Similarity=-0.043 Sum_probs=84.4
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...+.......+.|.+.||+|||+++..+..+..+..+......+. ...-.+...+.....+....+.+|++|++.|
T Consensus 46 ~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~ 122 (393)
T PRK11195 46 FFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKL 122 (393)
T ss_pred HHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3345566677889999999999999988766554333322222111 1111222233333456778999999999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+++.|+......++.+++|.+.+.+.+.. ...++.+.+.+.+++.+. .+..||.+
T Consensus 123 ~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~~-~~~l~~~~ 177 (393)
T PRK11195 123 VKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAALF-NLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HhcCCCCc
Confidence 99999999999999999999998877643 223333333333333333 34446654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.6e-07 Score=86.59 Aligned_cols=134 Identities=10% Similarity=-0.051 Sum_probs=82.7
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhH
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
.++..++.+..|.+.||+|||+++..................+.......-++.... .+.........+|.+|++.|++
T Consensus 36 ~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g-~~~~~~~~~~~~~~~~~~~r~~ 114 (368)
T TIGR00903 36 PAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALG-QPFLLNAFAPAASQIREERRDL 114 (368)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhH-hHHHHHHHHHHHHHcCHHHHHH
Confidence 445667778899999999999877654433322221111111111111111111111 2223344555689999999999
Q ss_pred HHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 360 ~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+.++.+....+|+.++|.+.+.+.+..+=...+++.+.+.++..+..++..||+.
T Consensus 115 a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 115 VISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999988887776543223455556666665565665667754
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.8e-06 Score=80.80 Aligned_cols=127 Identities=14% Similarity=0.110 Sum_probs=99.2
Q ss_pred hhhccchhhhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHHH
Q 014265 18 FMFRLPHLWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSF 97 (427)
Q Consensus 18 ~~~~~~~~~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~ 97 (427)
..+.+.| ..|.|+++++..+...+...+..+.++...+-+..+..|++...+.+-.+|+--..|+++--++.+.....
T Consensus 60 ~vflltd--~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa 137 (412)
T PF01770_consen 60 PVFLLTD--YLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAA 137 (412)
T ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHH
Confidence 3334444 68889999999999999999999999999999999999999998877788887667887777788888888
Q ss_pred HHHhHhHHHHHHHHhcC--CCCchHHHHhhhHHHHHHHHHhhcccCchhHH
Q 014265 98 WTIGSVSEAIGAWIIMP--RLDWRWLLGLSSIPSFILLAFLGFQPESPRYL 146 (427)
Q Consensus 98 ~~iG~i~~~~~~~~~~~--~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L 146 (427)
.-.|..++++++-.+.. ..+.+.++.+......+.++..+++|-.++=+
T Consensus 138 ~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~ 188 (412)
T PF01770_consen 138 TLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSL 188 (412)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 88888888888766543 45677787777655555555556777755533
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.6e-08 Score=96.14 Aligned_cols=118 Identities=16% Similarity=0.052 Sum_probs=91.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHH-HHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSP----NYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFS-SFWT 99 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~----~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~-~~~~ 99 (427)
||+|||+.+.++.++..++......+. +..++++.+++.|++.+... ....++.|+.|+++||+..++.+ ..+.
T Consensus 276 dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~ 355 (418)
T TIGR00889 276 KRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNG 355 (418)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 699999999999999888766665532 34678889999999988764 45677899999999999999997 5788
Q ss_pred HhHhHHHHHHHHhcCC------CCchHHHHhhhHHHHHHH-HHhhcccCch
Q 014265 100 IGSVSEAIGAWIIMPR------LDWRWLLGLSSIPSFILL-AFLGFQPESP 143 (427)
Q Consensus 100 iG~i~~~~~~~~~~~~------~~WR~~~~~~~i~~li~~-~~~~~lpESP 143 (427)
+|.++++.++..+.+. .|||..|.+.++..++.. +..+++||+.
T Consensus 356 lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 356 FGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred hHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999888887665433 579999988877765544 3345567663
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.9e-07 Score=91.18 Aligned_cols=135 Identities=13% Similarity=-0.012 Sum_probs=89.8
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch
Q 014265 279 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 279 ~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
..++..++.++.|.+.||+|||+.+..+.++.++..+..... .+.....+.-++..++....+.....+.+|.+|++.
T Consensus 85 ~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~ 164 (465)
T TIGR00894 85 HFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE 164 (465)
T ss_pred HHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH
Confidence 345667788889999999999999888776655444332221 111111111122222223345567889999999999
Q ss_pred hhHHHHHHHHhhhHhHhhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 357 RSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
|+++.|+.+....+|.+++|.+.+.+.+.. +-..++.+.+++.++..++.+.++||.
T Consensus 165 r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 165 RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988877653 433456666666655555555555543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-06 Score=89.30 Aligned_cols=161 Identities=11% Similarity=-0.025 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccCCCCCChhH-HHHHHHHHhhhhhHHHHHHHHHhh-hChh
Q 014265 223 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL-YIDEFITSLAEIPGLLLAAILVDT-AGRK 300 (427)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~g~~~~~~l~d~-~GRr 300 (427)
.|..+.++..-+...++||+...+.+...... .+.++... ..... ..........++|++.|| +|||
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~----------lg~~~~~a~~i~~~-~~~~~~~~~~~~G~laDr~~G~r 81 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQ----------LGFSQEQAFITFGA-FAALVYGLISIGGYVGDHLLGTK 81 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHHH-HHHHHHHHHhhHHHhhhhccchH
Confidence 34444455555567788888765544332110 01111111 11111 112223334578999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHhhhhHhHHHhcccccccch--hhHHHHHHHHhhhHhHhhhHH
Q 014265 301 LSITIMFTLSCLFLLPLVTYQS-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV--RSTGAGAANAMGRIGGMVCPL 377 (427)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~--R~~~~g~~~~~~~~~~~i~p~ 377 (427)
+++..+..+..+..+......+ .....+.......+.....+....+.+|.||++. |..++++.+...++|+.++|.
T Consensus 82 ~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~ 161 (489)
T PRK10207 82 RTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS 161 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence 9998887665554443333221 1111111111112112223456789999999884 577889999999999999999
Q ss_pred HHHHHHhhcchhHHHHH
Q 014265 378 VAVALVANCHQMTAVVL 394 (427)
Q Consensus 378 ~~~~l~~~~~~~~~~~~ 394 (427)
+.+++.+..+-...+.+
T Consensus 162 l~g~l~~~~gw~~~F~i 178 (489)
T PRK10207 162 LAPVIADKFGYSVTYNL 178 (489)
T ss_pred HHHHHHHhhChHHHHHH
Confidence 99988776653334444
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.3e-07 Score=87.72 Aligned_cols=143 Identities=15% Similarity=0.091 Sum_probs=100.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...+...++-.+.|.++||.+.|..+..++++++++.+.+.+..+-....++..+...+=..+++.+....+.-||++.|
T Consensus 72 ~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eR 151 (448)
T COG2271 72 AFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKER 151 (448)
T ss_pred HHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcccc
Confidence 34455667778999999999999999999999998888777655333333333333333233677889999999999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHH--HHHHhhcchhHHHHHHHHHHHHHHHHHhhcc---CccCCccccc
Q 014265 358 STGAGAANAMGRIGGMVCPLVA--VALVANCHQMTAVVLLVVVIVTSILSVMLIP---FETKGQELSD 420 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~--~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~---pEtkg~~l~e 420 (427)
|+-.++=|+..++||.+.|.+. ..+....+-...|++=++++++.+++.+++. ||+.|.+-.|
T Consensus 152 G~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie 219 (448)
T COG2271 152 GTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIE 219 (448)
T ss_pred CceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHH
Confidence 9999999999999999988877 5554443323455555555555555555542 5666654443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-07 Score=90.99 Aligned_cols=138 Identities=18% Similarity=0.044 Sum_probs=84.8
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhch--h-hHHHHHHHHHHHHHhhhhHhHHHhccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS--N-ILTTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
..+..++..++..+.|.+.||+|||+.+..+.++..+.......... . +...+.-++..++..........+.+|.+
T Consensus 77 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 156 (481)
T TIGR00879 77 VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIA 156 (481)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccC
Confidence 33445667788889999999999999987766554443333222111 1 11122222222333334556788999999
Q ss_pred ccchhhHHHHHHHHhhhHhHhhhHHHH---HHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 353 PTSVRSTGAGAANAMGRIGGMVCPLVA---VALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~i~p~~~---~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
|++.|+++.++.+....+|.+++|.+. ..+....+-...+.+.+...++.. +..++.||+.
T Consensus 157 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~ 220 (481)
T TIGR00879 157 PKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESP 220 (481)
T ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCCh
Confidence 999999999999999999999999887 322222222234444444444443 3344456764
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-06 Score=86.38 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHH----HHHHHHHH----HHHhhhhHhHHHhcccccccc
Q 014265 284 IPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILT----TGLLFGAR----MCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 284 ~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.+|.++.|.+.||+|||+.+..+....++......+..+.... ...+.... ++....++....+.+|.+|++
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~ 149 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG 149 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence 4677889999999999999988776655544444332221110 01111111 111223445678999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHH
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l 382 (427)
.|+++.++.....+++..+++.+...+
T Consensus 150 ~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 150 RKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888777777665544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.5e-06 Score=81.99 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=69.5
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh-----chhhHHHHHHHHHHHHHhhhhHhHHHhccccc
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-----QSNILTTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
+..+...+..+..|.+.||+|.|+....+.+..++..+...+. .+.+...++-.+..+. .+.+......+++.|
T Consensus 78 i~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf 156 (462)
T PRK15034 78 LPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFF 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC
Confidence 3444555666778999999999998877766655444443332 1111111111222222 345667788899999
Q ss_pred ccchhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
|++.|+++.|+....+++|..+++.+.+.+.
T Consensus 157 p~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 157 PKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred CHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999998888888887777766544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-06 Score=87.95 Aligned_cols=129 Identities=15% Similarity=0.023 Sum_probs=82.2
Q ss_pred hhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHH-HHHHHHHhhhhHhHHHhcccccccchhhHH
Q 014265 282 AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLL-FGARMCVMGAFTVSLIYAAEIYPTSVRSTG 360 (427)
Q Consensus 282 ~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~ 360 (427)
....+..+.|.++||+|||+.++.+..+.+...+......+.+...... .+..++....+........|.|| +.|+++
T Consensus 66 ~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a 144 (455)
T TIGR00892 66 VLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLA 144 (455)
T ss_pred HHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHH
Confidence 3455667889999999999988877655554444333322222111111 11111111122445567788886 789999
Q ss_pred HHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccC
Q 014265 361 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 411 (427)
Q Consensus 361 ~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~p 411 (427)
.|+.+....+++.++|.+.+.+.+..+-..++.+.+++.+++.+..+++.|
T Consensus 145 ~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 145 NGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999988888777655456777777766655554444443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-06 Score=88.53 Aligned_cols=164 Identities=13% Similarity=-0.039 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhh-hChhHH
Q 014265 224 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLS 302 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~-~GRr~~ 302 (427)
+....++..-+...+++|+...+.+...... .+.+....................++|++.|| +|||+.
T Consensus 21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~----------lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~ 90 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQ----------LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV 90 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 3344455555567778888776655443110 01111111111111111112223578999999 599999
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHH-HHHHHHHHHHhhhhHhHHHhcccccccch--hhHHHHHHHHhhhHhHhhhHHHH
Q 014265 303 ITIMFTLSCLFLLPLVTYQSNILTT-GLLFGARMCVMGAFTVSLIYAAEIYPTSV--RSTGAGAANAMGRIGGMVCPLVA 379 (427)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ElfPt~~--R~~~~g~~~~~~~~~~~i~p~~~ 379 (427)
+..+.++.++.........+..... .......++.....+....+.+|.||.+. |..+.++.+...++|+.++|.+.
T Consensus 91 ~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~ 170 (500)
T PRK09584 91 IMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT 170 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 8887665554433333322221111 11111112212223455678999998653 45678888899999999999999
Q ss_pred HHHHhhcchhHHHHHHHH
Q 014265 380 VALVANCHQMTAVVLLVV 397 (427)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~ 397 (427)
+++.+..+-...+.+.++
T Consensus 171 g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 171 PWLAAKYGWSVAFALSVV 188 (500)
T ss_pred HHHHHhhCHHHHHHHHHH
Confidence 988876654445555443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-06 Score=86.93 Aligned_cols=138 Identities=18% Similarity=0.106 Sum_probs=90.2
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---hhc--hhhHHHHHHHHHHHHHhhhhHhHHHhccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---TYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAE 350 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 350 (427)
.....+..++-.+++|.++||+.||+.++.+.....+....+. ..+ +.+...++.++..++.....+...++.+|
T Consensus 51 ~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~ 130 (524)
T PF05977_consen 51 QAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPE 130 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555667899999999999999887665543322221 111 22222233333333333334566889999
Q ss_pred ccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 351 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 351 lfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+.|.+.-..++++.+...++..+++|.+.+.++...+....+.+-++..++..++....+++.
T Consensus 131 lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~ 193 (524)
T PF05977_consen 131 LVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP 193 (524)
T ss_pred hccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 999999999999999999999999999999888877665556555544444444444444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=88.96 Aligned_cols=136 Identities=18% Similarity=0.048 Sum_probs=82.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh--------chhhHHHHHH----HHHHHHHhhhhHhHH
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--------QSNILTTGLL----FGARMCVMGAFTVSL 345 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----~~~~~~~~~~~~~~~ 345 (427)
...++..++.++.|.+.||+|||+.+..+..+.++..+..... .++......+ ++..++..+.+....
T Consensus 63 ~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~ 142 (479)
T PRK10077 63 SALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSP 142 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHH
Confidence 3456677888999999999999999887765544333322211 0111111111 222233344456778
Q ss_pred HhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHh--------hcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 346 IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA--------NCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 346 ~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~--------~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.+.+|.+|++.|+++.|+......+|..+++.+...+.. ..+-...+++.+...++..+. .++.||+.
T Consensus 143 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~ 218 (479)
T PRK10077 143 MYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETP 218 (479)
T ss_pred HHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCc
Confidence 899999999999999999988888888887766543321 112123455444444444444 34457864
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.3e-07 Score=92.35 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=100.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhccccccc
Q 014265 275 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 275 ~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
...+..++..+|.++.|.++||+|||+.+..+.++..++.++.++..+.+...++=++..++..+.....+++.+|++++
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~ 202 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSP 202 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCc
Confidence 34444566778899999999999999999999888877776655555555445555666666777888999999999999
Q ss_pred chhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 355 SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 355 ~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
+.|+.+..+ ..+.+.++.+.|....++...+ . ..+++.....++..+. .+++||++.
T Consensus 203 ~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~W-r-~~~~~~~~~~~~~~~~-~~l~~Es~r 259 (521)
T KOG0255|consen 203 KQRGLALTL-GGFFFVGGLMLPAGAAYITRDW-R-WLFWIISIPSGLFLLL-WFLPPESPR 259 (521)
T ss_pred chhhHHHHH-HHHHHHHHHHHHHHHHHHHhhH-H-HHHHHHHHHHHHHHHH-HHccCcChH
Confidence 999999999 8888889989888888777632 2 2333334444434333 666778653
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-06 Score=84.44 Aligned_cols=101 Identities=23% Similarity=0.202 Sum_probs=66.1
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhh----HHHHHHH----HHHHHHhhhhHhHHHhcccc
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNI----LTTGLLF----GARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~El 351 (427)
.++..+|.++.|++.||+|||+.+..+....++..+...+..+.. .....+. +..++..+.++....+.+|.
T Consensus 73 ~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 152 (432)
T PRK10406 73 FLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEV 152 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHh
Confidence 344558888999999999999999887776655554443322110 1111112 22233334566788999999
Q ss_pred cccchhhHHHHHHHHhhhHhHhhhHHHHH
Q 014265 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAV 380 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~i~p~~~~ 380 (427)
+|++.|+...++.......|.++++.+..
T Consensus 153 ~p~~~rg~~~~~~~~~~~~G~~~~~~~~~ 181 (432)
T PRK10406 153 AVEGRKGFYASFQYVTLIGGQLLALLVVV 181 (432)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877666666666665543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-06 Score=84.58 Aligned_cols=112 Identities=12% Similarity=-0.011 Sum_probs=70.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---hhchhhHHHHHH-HHHHHHHhhhhHhHHHhcccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---TYQSNILTTGLL-FGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~El 351 (427)
.....+...++..+.+.+.||+|||+.+..+..+.+....... ...++....... .+...+..........+..|.
T Consensus 54 ~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~ 133 (402)
T TIGR00897 54 FTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYN 133 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHh
Confidence 3445566778889999999999999998877665544433221 111222211111 111111111222345667889
Q ss_pred cccchhhHHHHHHHHhhhHhH-hhhHHHHHHHHhhcc
Q 014265 352 YPTSVRSTGAGAANAMGRIGG-MVCPLVAVALVANCH 387 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~-~i~p~~~~~l~~~~~ 387 (427)
+|++.|+++.|+.+....+|. .++|.+...+.+..+
T Consensus 134 ~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 134 TKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999988885 578887776665544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.2e-07 Score=91.44 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=88.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
..+..++..++.++.|.++||+|||+.+..+.++.++..+...+..+.+...+.-++..++..+.....+.+.+|.+|.+
T Consensus 133 ~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~ 212 (505)
T TIGR00898 133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK 212 (505)
T ss_pred HHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChh
Confidence 34445667788889999999999999988877766555544444333222222223333333444667899999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
.|+.+.++......+|.+++|.+...+.+ . ...+.+.++..++..+.. ++.||+
T Consensus 213 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--w-r~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 213 QRAIVGTLIQVFFSLGLVLLPLVAYFIPD--W-RWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhH--H-HHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 99999999987778888888877654432 1 234455555555555555 445675
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-07 Score=91.79 Aligned_cols=111 Identities=17% Similarity=0.097 Sum_probs=90.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+..+..++.++..+.+|...+++.+++.|++.+... .......|..|+++||+..++.+....+|..+
T Consensus 274 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 353 (399)
T PRK05122 274 NRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI 353 (399)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999988888888888888888888889999999999988653 44556679999999999999999999999877
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHHh
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 136 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~ 136 (427)
++.+...+....||+..+.+.++..++..+..
T Consensus 354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (399)
T PRK05122 354 TGPLAGLVASWFGYPSIFLAAALAALLGLALT 385 (399)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 77666666666799999988777666554443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.9e-06 Score=81.64 Aligned_cols=110 Identities=13% Similarity=-0.050 Sum_probs=72.5
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....++...+..+.+.+.||+|||+.+..+.....+........++.+......+...++.............+..|.+
T Consensus 47 ~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 126 (381)
T PRK03633 47 SSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR 126 (381)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 34445666778888999999999999888776665544443333333222222222222222222233345566888999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
.|+++.|..+....+|..++|.+.+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 127 NRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999988866544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.5e-07 Score=89.96 Aligned_cols=131 Identities=15% Similarity=0.035 Sum_probs=81.3
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-----hchhhHHHHHHHHHHHHHhhhhHhHHHhcccccc
Q 014265 279 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYP 353 (427)
Q Consensus 279 ~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 353 (427)
..++..++.++.|.++||+|||+.+..+.+..++..+.... ..+.+.....-.+..++....++....+.+|.+|
T Consensus 73 ~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 152 (467)
T PRK09556 73 FSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTP 152 (467)
T ss_pred HHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcC
Confidence 34556677888999999999999987776665544433322 1111111111122222222334567789999999
Q ss_pred cchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhc-c-hh-HHHHHHHHHHHHHHHHHhhc
Q 014265 354 TSVRSTGAGAANAMGRIGGMVCPLVAVALVANC-H-QM-TAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 354 t~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~-~-~~-~~~~~~~~~~~i~~~~~~~l 409 (427)
++.|+++.|+....+.+|+.+++.+..++.... . .+ ..+.+.+.+.++..+..+++
T Consensus 153 ~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 153 RRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred ccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988776555432 1 12 23444455554444444444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-07 Score=90.29 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=90.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+..+.....+......++++...+++.|++.+++.|... ....+..|..|+ +||+..++.+....+|..+
T Consensus 277 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~ 355 (393)
T PRK15011 277 KRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWII 355 (393)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHH
Confidence 59999998877666655554455567788888899999998877543 345667899986 4899999998889999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccC
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPE 141 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpE 141 (427)
++.++..+.+..+|+.++.+.+++.++..+..+++||
T Consensus 356 g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 356 AGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9988888777789999999888887777666666654
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.5e-07 Score=86.21 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=75.0
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHH-HHHHHHHHhhhhHhHHHhcccccccchhh
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGL-LFGARMCVMGAFTVSLIYAAEIYPTSVRS 358 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 358 (427)
.+.+++.....|-++||.|||..+..+.+...+.....+...+- ...+. =+.. ....+-.++..++.+|++|.+.|+
T Consensus 78 ~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F-~afv~aR~l~-Gi~kgnl~v~rAiisdV~sek~r~ 155 (451)
T KOG2615|consen 78 SILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF-AAFVLARFLG-GIFKGNLSVIRAIISDVVSEKYRP 155 (451)
T ss_pred HHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh-hhccCchHHHHHHHHhhcChhhcc
Confidence 45677777888999999999999988877766544433332211 11111 0111 122344578899999999999999
Q ss_pred HHHHHHHHhhhHhHhhhHHHHHHHHh
Q 014265 359 TGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 359 ~~~g~~~~~~~~~~~i~p~~~~~l~~ 384 (427)
.+++..+....+|-+++|.+.+++..
T Consensus 156 l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 156 LGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ceeeeeehhhhcchhhcchhhhHHHh
Confidence 99999999999999999999988865
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.6e-06 Score=81.23 Aligned_cols=124 Identities=14% Similarity=0.082 Sum_probs=80.6
Q ss_pred hhhccchh-h--hccchhHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHhhhccccch-hhhhhhhhccCC--CCc
Q 014265 18 FMFRLPHL-W--QNLVRMGFLGEALVTAGAGLLSSFSP----NYITLITLRCLVGVGLGSGH-VFLSWFLEFVPP--SNR 87 (427)
Q Consensus 18 ~~~~~~~~-~--~~GRk~~~~~~~~~~~~~~~~~~~a~----~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~--~~R 87 (427)
+.+.++|. . .|-||+=++++.++.+++.+..+..+ +.....++=++..+|....- +.-+.+.|...+ +.|
T Consensus 43 ~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~ 122 (433)
T PF03092_consen 43 LYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESR 122 (433)
T ss_pred hHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchh
Confidence 55566665 2 34466666667777766666555543 45666666677766665543 345667787643 237
Q ss_pred hhHHHHHHHHHHHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHH-HHhhcccC
Q 014265 88 GMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPE 141 (427)
Q Consensus 88 g~~~~~~~~~~~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~-~~~~~lpE 141 (427)
|...+.......+|.+++..++.......++|..|.+.+...++.. ...+..+|
T Consensus 123 g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 123 GDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 8888888888889999998888777777889998887765444443 33344444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=6e-06 Score=80.44 Aligned_cols=135 Identities=16% Similarity=0.016 Sum_probs=79.1
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHH-HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhh
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSIT-IMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 358 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 358 (427)
.+...+...+.|.+.||+|||+.+. .+.....+.........+.+...+.-.....+..........+..|..|++.|+
T Consensus 43 ~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~ 122 (375)
T TIGR00899 43 AIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGRE 122 (375)
T ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchh
Confidence 3445566677899999999988654 344443333333233222221111111111111222334566778888888777
Q ss_pred HH--HHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 359 TG--AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 359 ~~--~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.+ .+.....+.+|..++|.+.+.+.+..+-...+.+.+.+.++..+...++.||.+
T Consensus 123 ~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 123 AVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred hHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 55 577777778899999988887776555445666666666666666555456644
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-05 Score=77.36 Aligned_cols=298 Identities=16% Similarity=0.102 Sum_probs=165.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc---hhhhhhhhhccCCCCchhHHHHHHHHHHHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG---HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 102 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~---~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~ 102 (427)
|+||||..+.+..+...+..+...+.. +.+++ +.|+.-|.. ....+|++.++..++|....++...++..+.
T Consensus 87 D~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~ 161 (463)
T KOG2816|consen 87 DRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGL 161 (463)
T ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHH
Confidence 499999999999999999988888876 33333 666654432 3456788899999999999999999888888
Q ss_pred hHHHHHHHHhcCCCCchHHHHhhhHHHHHHHH-HhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccccccc
Q 014265 103 VSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 181 (427)
Q Consensus 103 i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~-~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~ 181 (427)
.+++.++.......+--.+|.+.+...++... .+.++|||-.- +.+.+ +. .++.
T Consensus 162 ~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~-~~---------~~~~------------ 216 (463)
T KOG2816|consen 162 VIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD-AT---------LREL------------ 216 (463)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc-cc---------cccc------------
Confidence 88888877766666777788887777666544 45678988641 11110 00 0000
Q ss_pred CCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccCCCC
Q 014265 182 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD-TRCRSP 260 (427)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~-~~~~~~ 260 (427)
+..... .... . ..+..+.+.+.+|..+.+....+ +.+ .+...... .. ...
T Consensus 217 ~~~~~~------~~~~----------~---~~~~~~~~~~~~r~~l~l~l~~~---~~~------~~~~~~~~~~~-~~y 267 (463)
T KOG2816|consen 217 TPGSLD------SSHV----------A---DAFQSLTKVGPDRLLLLLLLVAF---LSS------LPEAGGASDVL-LLY 267 (463)
T ss_pred CCCccc------chhh----------h---hhhhhhcccCCCccchHHHHHHH---HHH------HHHhcCceeEE-EEE
Confidence 000000 0000 0 01111111222222222221111 111 11111000 00 000
Q ss_pred CccCCCCCChhHHHHHHHHHhhhhhHHHHHH-HHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhh
Q 014265 261 LMFSHHPQDANLYIDEFITSLAEIPGLLLAA-ILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG 339 (427)
Q Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~-~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (427)
......-+.........+....+..+.++.. .+...+|-|+....+...-.+.....++..+.|...... ........
T Consensus 268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~-v~~~~~~~ 346 (463)
T KOG2816|consen 268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAG-VVVALAGI 346 (463)
T ss_pred EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHH-HHHHhhcc
Confidence 0001111111111112233444556666665 676778888866666655555455555544444321111 11122233
Q ss_pred hhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
.......+.+-+-+++.+++..++...+..+.++++|.+...+.
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 44567788888889999999999999999999999998876554
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-07 Score=92.51 Aligned_cols=108 Identities=9% Similarity=-0.039 Sum_probs=88.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHH-HHHHHHHhHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~iG~i 103 (427)
||+|||+.+..+.++..++.++.++++|.+.+++.+++.|++.+.. .....++.|..|++.|+...+. .+....+|.+
T Consensus 287 dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ 366 (420)
T PRK09528 287 NRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAV 366 (420)
T ss_pred HHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHH
Confidence 5999999999999999988888889999999999999999987765 3445678899999999876544 5667788998
Q ss_pred HHHHHHHHhcCCCCchHHHHhhhHHHHHHH
Q 014265 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILL 133 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~li~~ 133 (427)
+++.+...+.+..|||..|.+.++..++..
T Consensus 367 ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~ 396 (420)
T PRK09528 367 FLSTLAGNLYDSIGFQGTYLILGGIVLLFT 396 (420)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 888888777777899999987766555433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-05 Score=79.89 Aligned_cols=108 Identities=19% Similarity=0.039 Sum_probs=73.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh--chhh-HHHHHHHHHHHHHhhhhHhHHHhccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--QSNI-LTTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
.....++..++.+..+.+.||+|||+.+..+..+.+......... .++. ......++..++..........+..|+.
T Consensus 44 ~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~ 123 (410)
T TIGR00885 44 QSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG 123 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHC
Confidence 344456667778889999999999999988776655444332211 1112 1112222222222333445567888899
Q ss_pred ccchhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
|++.|++..++.+....+|+.++|.+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 124 PESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887765
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.6e-06 Score=78.51 Aligned_cols=133 Identities=20% Similarity=0.150 Sum_probs=88.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHH-HhhhhHhHHHhccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQSNILTTGLLFGARMC-VMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Elf 352 (427)
..+..+.+.+.-+.-+++.||+|-|+....+.++..+-.+...+ .++..+. .+.+..... ..+.++....++++-|
T Consensus 55 ~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~-ll~~gll~G~~GasFav~m~~~s~~f 133 (417)
T COG2223 55 VAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQ-LLVIGLLLGLAGASFAVGMPNASFFF 133 (417)
T ss_pred HHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHH-HHHHHHHHhcccceehcccccccccC
Confidence 34444555555577899999999998888776665444443333 2222222 222222222 2345778899999999
Q ss_pred ccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc---hhHHHHHHHHHHHHHHHHHhhcc
Q 014265 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH---QMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~---~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
|++.++++.|+.- .|++|..+..++.|.+....+ -.....++....+++.+..++..
T Consensus 134 P~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 134 PKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred ChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999999998877655 22344566666666666665553
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.8e-06 Score=80.44 Aligned_cols=110 Identities=14% Similarity=-0.082 Sum_probs=68.5
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH--H-hhc----hh-hHHHHHHHHHHHHHhhhhHhHHHhcc
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL--V-TYQ----SN-ILTTGLLFGARMCVMGAFTVSLIYAA 349 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~--~-~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (427)
...+...++..+.|.++||+|||+.+..+.+...+..+.. . ... ++ +...+.-.+...+..........+..
T Consensus 59 ~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~ 138 (392)
T PRK12382 59 IQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGL 138 (392)
T ss_pred HHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667789999999999999887765544332211 1 111 11 11111111111111222334566788
Q ss_pred cccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc
Q 014265 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 350 ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~ 387 (427)
|.+|++.|+++.|+.......+..++|.+.+.+.+..+
T Consensus 139 ~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (392)
T PRK12382 139 GLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG 176 (392)
T ss_pred hhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999888888888899988887766543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=83.16 Aligned_cols=139 Identities=17% Similarity=0.094 Sum_probs=104.9
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch-h
Q 014265 279 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV-R 357 (427)
Q Consensus 279 ~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~-R 357 (427)
..+.++...-+.|.++||+|+|..+++++.+.....+..++........+.=.+-......+.....++.++.||.+. |
T Consensus 115 kA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er 194 (464)
T KOG3764|consen 115 KALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNER 194 (464)
T ss_pred HHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhh
Confidence 345677777788999999999999999988877766666554433211111111122333345677889999999976 6
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCcc
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~ 417 (427)
+++.|++-.+-.+|-.++|-+.+.+.+..|...||+++++++++....-++..+.|+..+
T Consensus 195 ~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 195 GSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred hHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 999999999999999999999988888888889999999999998888877775555444
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-05 Score=79.18 Aligned_cols=139 Identities=9% Similarity=0.012 Sum_probs=83.9
Q ss_pred HHHHHhhhhhHHHHHHHHHh----hhChhHHHHHH-HHHHHHHHHHHHhhch-------------hhH----HHHHHHHH
Q 014265 276 EFITSLAEIPGLLLAAILVD----TAGRKLSITIM-FTLSCLFLLPLVTYQS-------------NIL----TTGLLFGA 333 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d----~~GRr~~~~~~-~~~~~~~~~~~~~~~~-------------~~~----~~~~~~~~ 333 (427)
..+..+...+...+.|.++| |+|||+.++.. .....+.+..+....+ ... ......+.
T Consensus 45 ~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ll 124 (477)
T TIGR01301 45 WLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWIL 124 (477)
T ss_pred HHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHH
Confidence 34455566667778899999 59999988664 3333333333322111 011 11111222
Q ss_pred HHHHhhhhHhHHHhcccccccchh--hHHHHHHHHhhhHhHhhhHHHHHHH--Hhh--------c-----chhHHHHHHH
Q 014265 334 RMCVMGAFTVSLIYAAEIYPTSVR--STGAGAANAMGRIGGMVCPLVAVAL--VAN--------C-----HQMTAVVLLV 396 (427)
Q Consensus 334 ~~~~~~~~~~~~~~~~ElfPt~~R--~~~~g~~~~~~~~~~~i~p~~~~~l--~~~--------~-----~~~~~~~~~~ 396 (427)
.++.........++.+|+.|++.| +.+.++.+.+..+|+++++.+.... ... . +....|.+-+
T Consensus 125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a 204 (477)
T TIGR01301 125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDI 204 (477)
T ss_pred HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHH
Confidence 233333445678899999999876 5788888888899999988776543 110 0 1233555555
Q ss_pred HHHHHHHHHHhhccCccC
Q 014265 397 VVIVTSILSVMLIPFETK 414 (427)
Q Consensus 397 ~~~~i~~~~~~~l~pEtk 414 (427)
++.+++.+...+..+|..
T Consensus 205 ~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 205 ILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHeeeeeccC
Confidence 666777777777777854
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-05 Score=79.50 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=67.4
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhh----HHHHHHHH----HHHHHhhhhHhHHHhccccc
Q 014265 281 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNI----LTTGLLFG----ARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 281 ~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~Elf 352 (427)
+...+|.++.|.+.||+|||+.+..+....++..+...+..+.. +....+.. ..++..+.++....+.+|.+
T Consensus 75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~ 154 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA 154 (438)
T ss_pred HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence 44567778899999999999999887776665555444422211 11111222 22233334456678999999
Q ss_pred ccchhhHHHHHHHHhhhHhHhhhHHHHHHH
Q 014265 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~i~p~~~~~l 382 (427)
|++.|+...+.......+|..+++.+...+
T Consensus 155 p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l 184 (438)
T PRK09952 155 PKNKKAFYSSGVQVGYGVGLLLSTGLVSLI 184 (438)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888777777777776555443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-05 Score=90.11 Aligned_cols=108 Identities=14% Similarity=-0.022 Sum_probs=73.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh---hchhhHHHHHHHHHHHHHhhhhHhHHHhccccccc
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
+..+...++.+++|.++||+|||+++..+.++..+..+.... ..+.+...+..++..++........+.+.+|++|.
T Consensus 55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 134 (1146)
T PRK08633 55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK 134 (1146)
T ss_pred HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc
Confidence 344556677788999999999999988766544333222111 12212212222222222233345668899999999
Q ss_pred chhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 355 SVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 355 ~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
+.|+.+.|+......+|.+++|.+.+.+...
T Consensus 135 ~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 135 ENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998877654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-05 Score=79.37 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=82.3
Q ss_pred hHHHHHHHHHhhh-----ChhHH-HHHHHHHHHHHHHHHHhhc--hh-hHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 285 PGLLLAAILVDTA-----GRKLS-ITIMFTLSCLFLLPLVTYQ--SN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 285 ~g~~~~~~l~d~~-----GRr~~-~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.+.++.+.++||+ |||+. +..+.+..+.....+.+.. ++ +.......+..++.........++.+|.+|.+
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 4667889999999 99986 4455554444443333322 12 12222222222333333446688999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVA-NCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.|+++.++.....++|..+++.+...+.+ ..+-...+.+.+++.++..+..++ .||+.
T Consensus 140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~ 198 (491)
T PRK11010 140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT 198 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 99999999999999999999988887776 333334555666665555554444 46764
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-05 Score=78.59 Aligned_cols=106 Identities=14% Similarity=-0.016 Sum_probs=73.0
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhH
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
.++...+..+.+.+.||+|||+.+..+..+.++..+...+.++.......-.+..++..........+..|.|| +.|+.
T Consensus 54 ~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~ 132 (393)
T PRK09705 54 VVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPL 132 (393)
T ss_pred HHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchh
Confidence 34556677888999999999999999888776666655443332221221222222222333455677888898 77999
Q ss_pred HHHHHHHhhhHhHhhhHHHHHHHHhhc
Q 014265 360 GAGAANAMGRIGGMVCPLVAVALVANC 386 (427)
Q Consensus 360 ~~g~~~~~~~~~~~i~p~~~~~l~~~~ 386 (427)
+.|........|+.+++.+.+.+.+..
T Consensus 133 ~~g~~~~~~~~g~~~g~~~~~~l~~~~ 159 (393)
T PRK09705 133 VMGLWSAALMGGGGLGAAITPWLVQHS 159 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999888888889988888776653
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-05 Score=88.86 Aligned_cols=136 Identities=15% Similarity=-0.023 Sum_probs=82.0
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHH--HHHHHHHhh-chhhHHHHHHHHHHHHHhhhhHhHHHhccccccc
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSC--LFLLPLVTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
+..+..++...++|.++||+|||+++........ ......... .+.+...+..++...+.........++..|++|.
T Consensus 60 ~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~ 139 (1140)
T PRK06814 60 VFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNK 139 (1140)
T ss_pred HHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc
Confidence 3344556667788999999999997643222111 111111111 2222222223333333333456789999999999
Q ss_pred chhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 355 SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 355 ~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+.|+.++|+.++...+|..++|.+.+.+....+....++..+.+.+++.++.+++ ||++
T Consensus 140 ~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 198 (1140)
T PRK06814 140 DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFI-PKTG 198 (1140)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhC-CCCC
Confidence 9999999999999999999999999988776543333322223333333333443 4543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.8e-05 Score=78.75 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc-----hhhHHHHH-HHHHHHHHhhhhHhHHHhcccccccchhhH
Q 014265 286 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-----SNILTTGL-LFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 286 g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
..+++|++.||+|||+++.++.+..++..+...+.. .+.+..++ ..+...+....+........+.|| +.|++
T Consensus 77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~ 155 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA 155 (591)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence 345689999999999999888776655544443321 11111111 112222222233455667788897 78999
Q ss_pred HHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Q 014265 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVML 408 (427)
Q Consensus 360 ~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 408 (427)
+.|+......+|+.+.+.+...+... +....+++.+.+.++..+....
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~~-~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFSD-NTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999887644444434332 2223444555554444333333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-05 Score=77.00 Aligned_cols=128 Identities=20% Similarity=0.155 Sum_probs=79.4
Q ss_pred HHHHHHHHhhh-----ChhHHH-HHHHHHHHHHHHHHHhhch--h-hHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 287 LLLAAILVDTA-----GRKLSI-TIMFTLSCLFLLPLVTYQS--N-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 287 ~~~~~~l~d~~-----GRr~~~-~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
..+.+.++||+ |||+.+ ..+.+..++....+.+..+ . +.......+...+.........++.+|.+|++.|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 56789999997 899875 4444444444333333211 1 1111111122222222334567889999999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhhcc--------hhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVANCH--------QMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~--------~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+.+.|+......+|.+++|.+...+.+..+ -..++++.+++.+++.+..++..||++
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999998889999999988877765544 223455555555555555554556754
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.1e-05 Score=74.17 Aligned_cols=109 Identities=16% Similarity=0.016 Sum_probs=71.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH--hhchhh-HHHHHHHHHHHHHhhhhHhHHHhcccc
Q 014265 275 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--TYQSNI-LTTGLLFGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 275 ~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~El 351 (427)
......++..++.++.+.++||+|||+.+..+..+..+..+... ...++. ...+..++..++........+.+..|.
T Consensus 66 ~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~ 145 (438)
T PRK10133 66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL 145 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 34445566778888999999999999999887766554443321 112222 212222222233333445556777788
Q ss_pred cccchhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
.|.+.|....++.+....+|..++|.+...+.
T Consensus 146 ~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887877899999999999999998876543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-05 Score=79.04 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhh----HHHHHHHHHH----HHHhhhhHhHHHhcccccccc
Q 014265 284 IPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNI----LTTGLLFGAR----MCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 284 ~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.++.++.|.+.||+|||+.+..+.++..+.........+.. +....++... ++.....+....+.+|.+|.+
T Consensus 49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~ 128 (394)
T TIGR00883 49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG 128 (394)
T ss_pred hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc
Confidence 45678889999999999999887766555444333322111 1111112211 111223345678999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHH
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l 382 (427)
.|+...++......+|.+++|.+...+
T Consensus 129 ~r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 129 KRGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988889998888776544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00018 Score=69.68 Aligned_cols=134 Identities=13% Similarity=0.002 Sum_probs=90.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..++..++..+...+.||+.||++++....+.....+...+..+-+...+.=.+..+.....|+....+..++-|++.|
T Consensus 56 ~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~ 135 (394)
T COG2814 56 AYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKR 135 (394)
T ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch
Confidence 34455667778888899999999999886665554444433322222111111122233345678889999999999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccC
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 411 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~p 411 (427)
+++.++...-..++.+++.=+..++-+..+=..+|...+.+.+++.+..+...|
T Consensus 136 ~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 136 GRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999988777787777656555544443235777778888888777777777
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.3e-05 Score=72.94 Aligned_cols=108 Identities=13% Similarity=-0.035 Sum_probs=68.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccch
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..+...++.++.+.+.||+|||+.+..+....+...... ...+.+......+...++..........+..|.+| +.
T Consensus 42 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~ 119 (355)
T TIGR00896 42 ALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR 119 (355)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch
Confidence 34455667788899999999999999877665443333222 22222211111111222222223344556788887 57
Q ss_pred hhHHHHHHHHhhhHhHhhhHHHHHHHHhhc
Q 014265 357 RSTGAGAANAMGRIGGMVCPLVAVALVANC 386 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~ 386 (427)
|+++.|+.+....+|..++|.+.+.+.+..
T Consensus 120 ~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 149 (355)
T TIGR00896 120 VGLMTGLYSMALMGGAALAAAATVPLAQHS 149 (355)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999988899999998887776543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-06 Score=82.65 Aligned_cols=146 Identities=14% Similarity=-0.040 Sum_probs=90.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...+...+...++|++.||++||+++.++..+=.+..++-.+..+-|...+.=.+..++-.+..++.-.++++.||...|
T Consensus 76 vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~R 155 (493)
T KOG1330|consen 76 VFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKR 155 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhh
Confidence 33455667788999999999999999887665444444333332222222221222223333445778899999999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHhhccCccCCcccccccc
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQM-TAVVLLVVVIVTSILSVMLIPFETKGQELSDTVD 423 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~l~pEtkg~~l~e~~~ 423 (427)
+++.++.+....+|+.++-....++-+..+.| +.+..-+++.++.+++..++.+|...+.-+|..+
T Consensus 156 s~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~ 222 (493)
T KOG1330|consen 156 SRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG 222 (493)
T ss_pred hHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccccc
Confidence 99999999998888766533222221111111 3455667777777777777777765444444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0065 Score=58.81 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=52.9
Q ss_pred HHHHHHHHhhhccccchhh-hhhhhhccCCCCchhHHHHHHHHHHHhHhHHHHHHHHhcCCCC-chHHHHhhhHH
Q 014265 56 TLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGLSSIP 128 (427)
Q Consensus 56 ~l~v~R~l~Gi~~G~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~~~~~~~~~~~~~-WR~~~~~~~i~ 128 (427)
...+.-.+.|+|.+...+. .++..+.+|+++|+++.++.-.+.-+|.++++.........++ =|....+...+
T Consensus 91 ~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a 165 (403)
T PF03209_consen 91 LAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA 165 (403)
T ss_pred HHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence 3555666777777766544 5677899999999999999999999999999888766554443 44444444433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.7e-05 Score=75.25 Aligned_cols=134 Identities=17% Similarity=0.136 Sum_probs=78.4
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH----HHHhhhhHhHHHhcccccccc
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGAR----MCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.+++++|.++++.+.||+|||..+....+...+..+.......... .-++.... .......+....|.+|+-|++
T Consensus 70 ~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~-~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~ 148 (485)
T KOG0569|consen 70 FIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPS-FEMLILGRLIVGLACGLSTGLVPMYLTEISPKN 148 (485)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh
Confidence 3556778899999999999998887766555444333332111000 01111111 111223456788999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhH-HHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 356 VRSTGAGAANAMGRIGGMVCP-LVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p-~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.||....+......+|-.++. .-.+.++.+-..|.....+..+..+..++.+.+.||+-
T Consensus 149 ~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESP 208 (485)
T KOG0569|consen 149 LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESP 208 (485)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999998888877777777773 33354544332333233333343444455555567864
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.6e-05 Score=73.76 Aligned_cols=129 Identities=13% Similarity=0.075 Sum_probs=84.9
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHH
Q 014265 281 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG 360 (427)
Q Consensus 281 ~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~ 360 (427)
.+..+..+.+|++.||+|-|+.+..+.+.-+++..+..+..+.....+.=++..++-...+ ..+.++...||++-|+++
T Consensus 73 ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ra 151 (511)
T TIGR00806 73 YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRA 151 (511)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHH
Confidence 3455677889999999999999988777666555544443221111111122222323344 789999999999999999
Q ss_pred HHHHHHhhhHhHhhhHHHHHHHHhhcchhHHH--HHHHHHHHHHHHHHhhcc
Q 014265 361 AGAANAMGRIGGMVCPLVAVALVANCHQMTAV--VLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 361 ~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~--~~~~~~~~i~~~~~~~l~ 410 (427)
+|+.++...+|.++++.+.+.+....+..... .+-.+...++.++++++|
T Consensus 152 tsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 152 AAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999998888744332222211 222233356667777776
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00048 Score=67.91 Aligned_cols=109 Identities=22% Similarity=0.153 Sum_probs=90.4
Q ss_pred hccchhHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCC--chhHHHHHHHHHHHh
Q 014265 27 QNLVRMGFLGEALVTAGAGLLSSFSP--NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTIG 101 (427)
Q Consensus 27 ~~GRk~~~~~~~~~~~~~~~~~~~a~--~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~iG 101 (427)
-.|+|+++..+.++..+|-++.+... +...++++-.+.++|.|.. +-+.+++.|..|++. |-...+++....++|
T Consensus 88 ~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiG 167 (498)
T COG3104 88 VLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIG 167 (498)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehH
Confidence 38999999999999999999998884 7889999999999999987 456778889988743 444567777788899
Q ss_pred HhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHH
Q 014265 102 SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 135 (427)
Q Consensus 102 ~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~ 135 (427)
.++++++..++....+|...|...++-..+.++.
T Consensus 168 sl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 168 SLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 9999999888888899999999887765544433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00014 Score=71.63 Aligned_cols=136 Identities=14% Similarity=0.062 Sum_probs=72.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH-h-hchh-hH-HHHHHHHHH----HHHhhhhHhHHH
Q 014265 275 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV-T-YQSN-IL-TTGLLFGAR----MCVMGAFTVSLI 346 (427)
Q Consensus 275 ~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~-~-~~~~-~~-~~~~~~~~~----~~~~~~~~~~~~ 346 (427)
...+..+...++..+.|.++||+|||+.+..+.....+...... . ..+. .. ......... .......+....
T Consensus 43 ~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 122 (396)
T TIGR00882 43 VFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEA 122 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Confidence 34455667777888999999999999988765443332221111 1 0110 00 011111111 111111222333
Q ss_pred hcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 347 YAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 347 ~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+..|.- +.++...|.....+.+|..++|.+.+.+.+ .+...++.+.+.+.++..+..+...||+
T Consensus 123 ~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 123 YIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred HHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333322 223445677888888999999988776544 3444566666666666555555555554
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00035 Score=69.05 Aligned_cols=131 Identities=15% Similarity=0.074 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhhh-----ChhH-HHHHHHHHHHHHHHHHHhhc--hhhHHHH-HHHHHHHHHhhhhHhHHHhccccccc
Q 014265 284 IPGLLLAAILVDTA-----GRKL-SITIMFTLSCLFLLPLVTYQ--SNILTTG-LLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 284 ~~g~~~~~~l~d~~-----GRr~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
.....+.+.++||+ |||+ .+..+....++....+.+.. ++.+... ..++...+.........++.+|.+|+
T Consensus 46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~ 125 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP 125 (402)
T ss_pred HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 34557789999999 8876 45665555554444433322 1222111 11122222222334668899999999
Q ss_pred chhhHHHHHHHHhhhHhHhhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 355 SVRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 355 ~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
+.|+++.++......+|.++++.+...+.+.. +-...+.+.+.+.+++.+.. +..||++.
T Consensus 126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~~ 186 (402)
T PRK11902 126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEPEV 186 (402)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCcc
Confidence 99999999999888889999888877776643 32345555565555554433 34466643
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.4e-05 Score=76.91 Aligned_cols=137 Identities=22% Similarity=0.155 Sum_probs=85.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....++...|.++++.++|++|||..+..+.+...+..+..+...+.....+.=++..++..+...+...|.+|+-|++
T Consensus 95 ~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~ 174 (513)
T KOG0254|consen 95 TSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH 174 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChh
Confidence 44456777889999999999999999988776655444443333332222122222222333344457789999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHhhc-chh-HHHHHHHHHHHHHHHHHhhccCccC
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQM-TAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~-~~~-~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.|+.-.+.......+|-.++ ++..+..++. ..| .++.+..+.+++..+. .++.||+-
T Consensus 175 ~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 175 IRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 99999999888877666555 5545444332 112 2334444444555555 55567764
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00024 Score=72.66 Aligned_cols=102 Identities=22% Similarity=0.237 Sum_probs=63.1
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhh
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 358 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 358 (427)
.+....+..+.|.++|.+|||...+.+.++..+..+.....++ +.......+. .+. .+........++|+.|.+-|.
T Consensus 88 ~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~-Gvg-aG~~~~~~~~isEl~p~k~R~ 165 (599)
T PF06609_consen 88 TLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY-GVG-AGVQELAALAISELVPNKWRG 165 (599)
T ss_pred HHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchhh
Confidence 4455666678899999999999998887766544443322121 1111111111 111 223335566789999999999
Q ss_pred HHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 359 TGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 359 ~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
.+.++.....-....++|.+...+.
T Consensus 166 ~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 166 LGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred hHhHHHHHHHHhhhcccHHHHHHhc
Confidence 9888777655455566777765443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0033 Score=62.32 Aligned_cols=90 Identities=16% Similarity=0.005 Sum_probs=64.1
Q ss_pred hhhhccch-hhhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhh-hhhhhhccCCCCchhHHHHH
Q 014265 17 IFMFRLPH-LWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIF 94 (427)
Q Consensus 17 ~~~~~~~~-~~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~-~~~~~E~~p~~~Rg~~~~~~ 94 (427)
++.+..|. .++.|-|+.+.++...+....+.--+ +|-+-+++.-.+.|+|.+...+. ..|+.|..+++.+.+..++.
T Consensus 65 v~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~ 143 (461)
T KOG3098|consen 65 VSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIF 143 (461)
T ss_pred HHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHH
Confidence 33333333 36899999999999998877765555 45677888999999998876554 67889999999988776664
Q ss_pred HHHHHHhHhHHHH
Q 014265 95 SSFWTIGSVSEAI 107 (427)
Q Consensus 95 ~~~~~iG~i~~~~ 107 (427)
=.....+.++++.
T Consensus 144 Wai~~~~li~Ggi 156 (461)
T KOG3098|consen 144 WAIGQSSLIIGGI 156 (461)
T ss_pred HHHHHHHHHhhhH
Confidence 4444444445443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.3e-05 Score=74.10 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=65.8
Q ss_pred hccc-hhHHHHHHHHHHHHHHHh---h-ccc-hHHHHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHHHHHH
Q 014265 27 QNLV-RMGFLGEALVTAGAGLLS---S-FSP-NYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 27 ~~GR-k~~~~~~~~~~~~~~~~~---~-~a~-~~~~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
|.|+ |+.++.+.++..++.++= . ..+ ..+.++++|++.|+|.|...+.=.|++..+-.+.|.++.+....+..+
T Consensus 97 k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vl 176 (488)
T KOG2325|consen 97 KTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVL 176 (488)
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHH
Confidence 5553 666777777766666543 2 233 578899999999999998878888998888888888889888888888
Q ss_pred hHhHHHHHHHHh
Q 014265 101 GSVSEAIGAWII 112 (427)
Q Consensus 101 G~i~~~~~~~~~ 112 (427)
|.++++.+...+
T Consensus 177 g~ilGp~~q~~f 188 (488)
T KOG2325|consen 177 GIILGPTIQLAF 188 (488)
T ss_pred HHHHhHHHHHHH
Confidence 888887776554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.5e-05 Score=75.66 Aligned_cols=107 Identities=13% Similarity=-0.012 Sum_probs=88.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHH-HHHHHhHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFS-SFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~-~~~~iG~i 103 (427)
||+|+|+.+.++.+...+..+..++++|.+++++.+++.|++.|... ....|+.+. |+++|++..++++ ..+++|..
T Consensus 265 ~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~ 343 (382)
T TIGR00902 265 QNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIA 343 (382)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999864 456777777 9999999888876 57889999
Q ss_pred HHHHHHHHhcCCCCchHHHHhhhHHHHHHHH
Q 014265 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLA 134 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~ 134 (427)
+++.++..+.+..|+ ..+.+.++.+++.++
T Consensus 344 ~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 344 IFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 999998888777787 445555555544433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.9e-05 Score=78.89 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=70.5
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc----------------------------h----------
Q 014265 281 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ----------------------------S---------- 322 (427)
Q Consensus 281 ~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~----------------------------~---------- 322 (427)
++..++.++.+++.||.|||+.+.++.++.++..+..+..+ +
T Consensus 79 i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 158 (633)
T TIGR00805 79 IGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQC 158 (633)
T ss_pred HHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccc
Confidence 44556677889999999999988776655544443332211 0
Q ss_pred -------h--hHHHHHHHHHHHH----HhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 323 -------N--ILTTGLLFGARMC----VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 323 -------~--~~~~~~~~~~~~~----~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
. .....++++..+. ....+.....|..|.+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 159 PSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred ccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 0 0011122223322 1223456688999999999999999999999999999999888877653
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00031 Score=64.15 Aligned_cols=108 Identities=18% Similarity=0.125 Sum_probs=66.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh--hc----hhhHHHHHH-HHHHHHHhhhhHhHHHhc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQ----SNILTTGLL-FGARMCVMGAFTVSLIYA 348 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 348 (427)
....+++...| +++|.+.|+.|.|..+.++.......-..+.. .. .+.+..++. ++..............-.
T Consensus 43 ~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~ 121 (250)
T PF06813_consen 43 STAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTC 121 (250)
T ss_pred HHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHH
Confidence 34445555444 77899999999999988776655444333322 11 111222211 111111122234556667
Q ss_pred ccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 349 AEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 349 ~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
.+.||. -||++.|+.....-+++.+-..+...+.+.
T Consensus 122 ~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 122 VRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 799995 699999999999888888877777666554
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.001 Score=63.84 Aligned_cols=109 Identities=17% Similarity=0.082 Sum_probs=74.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---hhchhhHHHHHHHHHHHHHhhhhHhHHHhccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---TYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
.+..-.+.+.+.+..+++++|+|+|..++.++.+..+...... .........+.+++...++.---...+.|.+.+.
T Consensus 54 qfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg 133 (422)
T COG0738 54 QFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLG 133 (422)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhC
Confidence 3444455566777889999999999999888776654444332 1122222222223322222222345678899999
Q ss_pred ccchhhHHHHHHHHhhhHhHhhhHHHHHHHHh
Q 014265 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~ 384 (427)
|++..+.-.++...++.+|++++|.+..+++.
T Consensus 134 ~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 134 KPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99988888999999999999999999888765
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00024 Score=70.00 Aligned_cols=127 Identities=18% Similarity=0.141 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc--hhhH
Q 014265 286 GLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQ---SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS--VRST 359 (427)
Q Consensus 286 g~~~~~~l~d~~-GRr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~--~R~~ 359 (427)
..+++|++.||+ |+|+.+..+.++..+..+.++... .......+.++. .+....=+......+|+||++ -|-.
T Consensus 77 t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~-iG~Gl~K~NiS~llg~ly~~~DprrD~ 155 (498)
T COG3104 77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALII-VGTGLFKPNISSLLGELYPKDDPRRDG 155 (498)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH-hccccccccHHHHHHHhcCCCCcccCC
Confidence 346899999995 999999888776665555554432 111111111111 111111135667888999873 2777
Q ss_pred HHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 360 ~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
++++.+...++|++++|++.+++.+..+....|...++-+.++.+..++.++..
T Consensus 156 gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 156 GFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred CccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchh
Confidence 778888888999999999999998887655555555555555655555554333
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00046 Score=68.98 Aligned_cols=138 Identities=20% Similarity=0.163 Sum_probs=99.9
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhH
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
++..++.+.+-|.++|+.|||..+......+.+-.+...+.. ++... ...........++..++|.++.-..+.|..
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~ 148 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSS 148 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheeeccchhHHHH
Confidence 444555666778899999999999887766654444333322 22222 111222233455678899999999999999
Q ss_pred HHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCccccc
Q 014265 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 420 (427)
Q Consensus 360 ~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~l~e 420 (427)
..|+.+..-..+..++|.+...+....+....+.+-.+..+++.+...+..||+...+.++
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS 209 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence 9999999999999999999998888777666677767777788888888888987766554
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.9e-05 Score=73.18 Aligned_cols=115 Identities=12% Similarity=-0.052 Sum_probs=78.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhcc-ccchhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL-GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~-G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+++.++..+++++.++.....+-..+.+.-|..-+++ |+..+++.|.-|..|...|+...+.-+.+.-+|.++
T Consensus 406 erlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~ 485 (528)
T KOG0253|consen 406 ERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIF 485 (528)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhh
Confidence 6899999999999999999998776554443333333333444 344677888899999999999888888888899999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCc
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPES 142 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpES 142 (427)
+++++ ...+...--.++..++ ..++..+..+++|-.
T Consensus 486 ~p~iA-~~~e~s~sl~i~vy~~-~~ilagIavcffPiE 521 (528)
T KOG0253|consen 486 SPVIA-MRAELSTSLPIFVYGA-LFILAGIAVCFFPIE 521 (528)
T ss_pred hhHHH-HHhccceeehHHHHHH-HHHHHHHHheeeeec
Confidence 99888 3333222333333333 333344445556533
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.7e-07 Score=89.31 Aligned_cols=105 Identities=22% Similarity=0.191 Sum_probs=71.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHhhhhHhHHHhccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---SNILTTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
.....++..+|.++.+.+.||+|||+.+..+.....+..+...+.. +.+.....-++..++..+......+|..|.-
T Consensus 52 ~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~ 131 (451)
T PF00083_consen 52 TSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIA 131 (451)
T ss_pred HHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3445567788899999999999999988877665544444433332 2222222212222333445567899999999
Q ss_pred ccchhhHHHHHHHHhhhHhHhhhHHHHH
Q 014265 353 PTSVRSTGAGAANAMGRIGGMVCPLVAV 380 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~i~p~~~~ 380 (427)
|++.|+...++.+....+|..++..+..
T Consensus 132 ~~~~R~~~~~~~~~~~~~G~~~~~~~~~ 159 (451)
T PF00083_consen 132 PPKHRGFLSSLFQLFWALGILLASLIGY 159 (451)
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999988888877777777765544
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00025 Score=70.77 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=69.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHhhhccccch-hhhhhhhhccC-------CCCchhHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFS-PNYITLITLRCLVGVGLGSGH-VFLSWFLEFVP-------PSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a-~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p-------~~~Rg~~~~~~~~ 96 (427)
||+|||+.+.++..+..++.+...+. ++...+++..++.|++.|... ...+++.|..| ++.+|...++.+.
T Consensus 282 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 361 (437)
T TIGR00792 282 KKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTF 361 (437)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHH
Confidence 59999999999888887777666655 356777888889999888653 44566666654 6678999999999
Q ss_pred HHHHhHhHHHHHHHHhcCCCCc
Q 014265 97 FWTIGSVSEAIGAWIIMPRLDW 118 (427)
Q Consensus 97 ~~~iG~i~~~~~~~~~~~~~~W 118 (427)
...+|..+++.+...+....||
T Consensus 362 ~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 362 VRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999988887776655433333
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.004 Score=59.20 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=65.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhh-hhhh-hhccCCCCchhHHH-HHHHHHHHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVF-LSWF-LEFVPPSNRGMWMV-IFSSFWTIGS 102 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~-~~~~-~E~~p~~~Rg~~~~-~~~~~~~iG~ 102 (427)
||+|||+.-+..+++.+++.+ +...+|+..|+++|++.|++......+ =+|+ .|.-.++.+..+.+ .+.....+++
T Consensus 94 D~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n 172 (354)
T PF05631_consen 94 DRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGN 172 (354)
T ss_pred HhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Confidence 599999999999999988885 667799999999999999998765443 4665 68755444433322 2221211332
Q ss_pred ----hHHHHHHHHhcCCCCc--hHHHHhhhHHHHH
Q 014265 103 ----VSEAIGAWIIMPRLDW--RWLLGLSSIPSFI 131 (427)
Q Consensus 103 ----i~~~~~~~~~~~~~~W--R~~~~~~~i~~li 131 (427)
+.+.+++-......+- ..+|........+
T Consensus 173 ~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~ 207 (354)
T PF05631_consen 173 GVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAV 207 (354)
T ss_pred HHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 2333334333333333 5677775544433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00025 Score=69.54 Aligned_cols=107 Identities=12% Similarity=-0.032 Sum_probs=81.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHH-HHHHHhHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFS-SFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~-~~~~iG~i 103 (427)
||+|+|+.+..+.....++.+..++++|.+++++..++.|++.|... ....++.|. |++++++..+..+ .....|..
T Consensus 265 ~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ 343 (382)
T PRK11128 265 RRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIA 343 (382)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHH
Confidence 68999999999999888888888889999999999999999988654 456677776 6666788877765 55667777
Q ss_pred HHHHHHHHhcCCCCchHHHHhhhHHHHHHHH
Q 014265 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLA 134 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~ 134 (427)
+++.++..+.+..++. .++..+..+++.+.
T Consensus 344 ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~ 373 (382)
T PRK11128 344 IMTVLSGFLYQHLGAG-VFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHhccHH-HHHHHHHHHHHHHH
Confidence 8888877777777874 45444444444333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0028 Score=62.23 Aligned_cols=126 Identities=19% Similarity=0.109 Sum_probs=71.6
Q ss_pred HHHHHHHhhhChhHHHHHHHHH-HHHHHHHHHhh--c-h-hhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHH
Q 014265 288 LLAAILVDTAGRKLSITIMFTL-SCLFLLPLVTY--Q-S-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAG 362 (427)
Q Consensus 288 ~~~~~l~d~~GRr~~~~~~~~~-~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g 362 (427)
++..+..||.|||+.++..... .+.+...+... . . ..+.........++....-.....+..|..+.+.++...+
T Consensus 57 ~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~ 136 (390)
T TIGR02718 57 LVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNA 136 (390)
T ss_pred HHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHH
Confidence 3335567778999886544322 22122222211 1 1 1111121222212222222345667888888888888877
Q ss_pred HHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 363 AANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 363 ~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
.......+|.++++....++.+..+-..++++.+++.++..+..++++||+
T Consensus 137 ~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~ 187 (390)
T TIGR02718 137 VQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA 187 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 776666888888887777777666555577777777666666666665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00033 Score=64.98 Aligned_cols=104 Identities=22% Similarity=0.248 Sum_probs=77.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccch--HHHHHHHHHHhhhccccc-hhhhhhhhhccCC-CCchhHHHHHHH-HHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPN--YITLITLRCLVGVGLGSG-HVFLSWFLEFVPP-SNRGMWMVIFSS-FWTI 100 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~--~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~-~~Rg~~~~~~~~-~~~i 100 (427)
||+|||+.+..+.....++.+..++.++ ...+++.|+++|++.|.. +....++.|+.|+ ++|+...+.... ...+
T Consensus 64 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (338)
T COG0477 64 DRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGAL 143 (338)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 3779998888887766666777777776 999999999999999865 4567888999998 778888877777 5777
Q ss_pred hHhHHHHHHHHhc--CCCCchHHHHhhhHHH
Q 014265 101 GSVSEAIGAWIIM--PRLDWRWLLGLSSIPS 129 (427)
Q Consensus 101 G~i~~~~~~~~~~--~~~~WR~~~~~~~i~~ 129 (427)
|.++++.++..+. ...+||..+.......
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 144 GLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 7777665544332 2368999666655443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.63 E-value=1.1e-05 Score=82.44 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=2.8
Q ss_pred HHHHHHHHHhhhccccchh-hhhhhhhccCCCCchhHHHHHHHHHHHhHhHHHHHHHH
Q 014265 55 ITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWI 111 (427)
Q Consensus 55 ~~l~v~R~l~Gi~~G~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~~~~~~~ 111 (427)
..++++.++.|+|....++ ..+|+=|.++++.-+...++......+|+.++.+++..
T Consensus 142 ~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~ 199 (539)
T PF03137_consen 142 YVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSF 199 (539)
T ss_dssp ----------SSS---------------------------------------------
T ss_pred HHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHH
Confidence 4689999999999877655 57889999999999999999999999999988777654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=70.81 Aligned_cols=117 Identities=12% Similarity=-0.039 Sum_probs=92.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccch--------HHHHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPN--------YITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSF 97 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~--------~~~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~ 97 (427)
|+.|||+..+..-.++.+..+..++..| ...+.+..++.-+|.++..- .+-+|.+|.+.||+.-++....
T Consensus 373 d~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttf--ivpaE~FParvR~t~hGIsAA~ 450 (538)
T KOG0252|consen 373 DIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTF--IVPAEIFPARVRSTCHGISAAS 450 (538)
T ss_pred ehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeE--EeehhhchHHHhhhhhhHHHHh
Confidence 4899999999999999999999999988 23566677777777766432 2237999999999999998888
Q ss_pred HHHhHhHHHHHHHHhcC-----CCCchHHHHhhhHHHHHHHHHhhcccCchh
Q 014265 98 WTIGSVSEAIGAWIIMP-----RLDWRWLLGLSSIPSFILLAFLGFQPESPR 144 (427)
Q Consensus 98 ~~iG~i~~~~~~~~~~~-----~~~WR~~~~~~~i~~li~~~~~~~lpESP~ 144 (427)
--.|.++++........ .-+-|..+++.+...++..+.-.++|||.+
T Consensus 451 GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 451 GKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred ccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 88999988776555544 457888998888777777777778898864
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00044 Score=64.78 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhhhhhhhhccCCCCchhHHHHHHHHHHHhHhHHHHHHH
Q 014265 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAW 110 (427)
Q Consensus 31 k~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~~~~~~ 110 (427)
|+++++-.+.....+.+..+.++..+.-+.-+..|.....+.+-++|+-+..+|+++.+.++..-...-.|-..++.++-
T Consensus 72 KPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQ 151 (433)
T KOG3810|consen 72 KPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQ 151 (433)
T ss_pred ceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHH
Confidence 78888888888888899999999999999999999998888777888889999999988888888777777777777665
Q ss_pred HhcC--CCCchHHHHhhhHHHHHHHHHhhcccCchhHH
Q 014265 111 IIMP--RLDWRWLLGLSSIPSFILLAFLGFQPESPRYL 146 (427)
Q Consensus 111 ~~~~--~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L 146 (427)
.+.+ ..+.+.+..++..-..+....-.++|.-+|=+
T Consensus 152 lLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl 189 (433)
T KOG3810|consen 152 LLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSL 189 (433)
T ss_pred HHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhh
Confidence 5433 45677777776555555555555666555433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0076 Score=60.91 Aligned_cols=124 Identities=13% Similarity=0.135 Sum_probs=69.4
Q ss_pred HHHHHHhhhC-----hhHHHHHHHHHHH-HHHHHHHhhchhh-HHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHH
Q 014265 289 LAAILVDTAG-----RKLSITIMFTLSC-LFLLPLVTYQSNI-LTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA 361 (427)
Q Consensus 289 ~~~~l~d~~G-----Rr~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~ 361 (427)
+.+.++||++ ||+.++.+.++.+ .....+....+.. ......++..++........-.+..|..+ +.+..+.
T Consensus 79 l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~ 157 (468)
T TIGR00788 79 FAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGP 157 (468)
T ss_pred HHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCC
Confidence 4889999996 6666666555442 2222222111111 11112233333333334467889999998 5544433
Q ss_pred ---HHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccC
Q 014265 362 ---GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 362 ---g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+.......+|..+++.+.+.+.+..+....+.+.+++.++..+.. ++.||.+
T Consensus 158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~-~~~~E~~ 212 (468)
T TIGR00788 158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVS-NLSKERR 212 (468)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-Hhccccc
Confidence 333444457899999998888776554556666666666664333 4446765
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0029 Score=64.25 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=92.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH--HhhhhHhHHHhccc
Q 014265 273 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC--VMGAFTVSLIYAAE 350 (427)
Q Consensus 273 ~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~E 350 (427)
++..+..++. .....+.+.+.||+|.|...+.+.+++...+++-.+..+ .+...+.+....+ ....+...-++.+
T Consensus 85 ~i~sl~~~~~-~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~-i~~l~lt~gvi~G~G~~~~~~paiviv~- 161 (509)
T KOG2504|consen 85 WIGSLLLGVY-LLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS-LWQLYLTFGVIGGLGLGLIYLPAVVILG- 161 (509)
T ss_pred HHHHHHHHHH-HHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhccchhhhcchhhhhh-
Confidence 3334443333 334456888999999999998888777666555444333 2233333222221 1222233334444
Q ss_pred ccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccC
Q 014265 351 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 411 (427)
Q Consensus 351 lfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~p 411 (427)
.|..+.|+.++|++..-.-+|.++-|.+.-++++..+..++..+++.+.+-..++...+.|
T Consensus 162 ~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 162 TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6778999999999999999999999999988988887777888888888877777877777
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0043 Score=61.70 Aligned_cols=127 Identities=13% Similarity=0.132 Sum_probs=88.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
..+.-.+.++..++++.+++|+|+-+.+..+++..+.=++.+...+++|..+-+=++-.......|...-.|.+..-|++
T Consensus 412 ~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~ 491 (618)
T KOG3762|consen 412 SALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPG 491 (618)
T ss_pred hhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 34444567788888999999999999888877665554555555566665444334444455567888899999999999
Q ss_pred hhhHHHHHHHHhhh-HhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 014265 356 VRSTGAGAANAMGR-IGGMVCPLVAVALVANCHQMTAVVLLVVVIVTS 402 (427)
Q Consensus 356 ~R~~~~g~~~~~~~-~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~ 402 (427)
.|+++.|+...... +|=-+++++.+.+.+..+....+-++++.+++.
T Consensus 492 l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~ 539 (618)
T KOG3762|consen 492 LRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVT 539 (618)
T ss_pred chHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHH
Confidence 99999999877653 555566666666666666555565555555433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0021 Score=64.89 Aligned_cols=112 Identities=16% Similarity=0.102 Sum_probs=84.9
Q ss_pred hccch--hHHHHHHHHHHHHHHHhhc--------cchHHHHHHHHHHhhhccccchhh-hhhhhhccCCCCchhHHHHHH
Q 014265 27 QNLVR--MGFLGEALVTAGAGLLSSF--------SPNYITLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFS 95 (427)
Q Consensus 27 ~~GRk--~~~~~~~~~~~~~~~~~~~--------a~~~~~l~v~R~l~Gi~~G~~~~~-~~~~~E~~p~~~Rg~~~~~~~ 95 (427)
|+|-| ++++.+++++.+..+...+ ..+-+.+.+.=++.|+..|+.+.. -++++|+.|+++.+...+++.
T Consensus 343 r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~ 422 (477)
T PF11700_consen 343 RFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYA 422 (477)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 88888 8888888888666665555 677888999999999999998765 578899999999999999999
Q ss_pred HHHHHhHhHHHHHHHHhcCCC-CchHHHHhhhHHHHHHHHHhhc
Q 014265 96 SFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPSFILLAFLGF 138 (427)
Q Consensus 96 ~~~~iG~i~~~~~~~~~~~~~-~WR~~~~~~~i~~li~~~~~~~ 138 (427)
..--....+++++...+.... +=|..+....+.-++.+++++.
T Consensus 423 i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 423 ITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 988888888887766654433 4677666555444444444433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0051 Score=61.75 Aligned_cols=129 Identities=19% Similarity=0.084 Sum_probs=85.1
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH--HHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhh
Q 014265 281 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP--LVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 358 (427)
Q Consensus 281 ~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 358 (427)
.+.+++.+.+++++||+|-|+++..+.+++++..+. ++...+.+...++=++..++....++....+.+.-.|+..|+
T Consensus 84 ~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers 163 (466)
T KOG2532|consen 84 WGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERS 163 (466)
T ss_pred HHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHH
Confidence 445667777899999999999888776666544332 222222221111112222223335667888999999999999
Q ss_pred HHHHHHHHhhhHhHhhhHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHhhc
Q 014265 359 TGAGAANAMGRIGGMVCPLVAVALVAN-CHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 359 ~~~g~~~~~~~~~~~i~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
+..++..+...+|.++.--+.+++-+. .|=...+++++.+.++-.++.+++
T Consensus 164 ~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 164 TFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887677777766 332356777777776555444444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0052 Score=61.66 Aligned_cols=87 Identities=17% Similarity=0.079 Sum_probs=64.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHhhhccccch-hhhhhhhhccCC-------CCchhHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSP--NYITLITLRCLVGVGLGSGH-VFLSWFLEFVPP-------SNRGMWMVIFS 95 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~--~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~-------~~Rg~~~~~~~ 95 (427)
+|+|+|+.+.++.++..++.+...+.+ +.+.+++.-++.|+|.+... ...+...|..|. |++|...++.+
T Consensus 289 ~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~ 368 (448)
T PRK09848 289 ARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFS 368 (448)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHH
Confidence 489999999999888887777666654 56777788889999988753 344555565553 45699999999
Q ss_pred HHHHHhHhHHHHHHHHh
Q 014265 96 SFWTIGSVSEAIGAWII 112 (427)
Q Consensus 96 ~~~~iG~i~~~~~~~~~ 112 (427)
....+|..++..+...+
T Consensus 369 ~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 369 FTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988876665443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.016 Score=58.61 Aligned_cols=103 Identities=10% Similarity=-0.019 Sum_probs=56.6
Q ss_pred hhhhhHHHHHHHHHh----hhChhHHH-HHHHHHHHHHHHHHHhhc--hhh--HHH-HHH-HHHHHHHhhhhHhHHHhcc
Q 014265 281 LAEIPGLLLAAILVD----TAGRKLSI-TIMFTLSCLFLLPLVTYQ--SNI--LTT-GLL-FGARMCVMGAFTVSLIYAA 349 (427)
Q Consensus 281 ~~~~~g~~~~~~l~d----~~GRr~~~-~~~~~~~~~~~~~~~~~~--~~~--~~~-~~~-~~~~~~~~~~~~~~~~~~~ 349 (427)
+...+.-.+.|.++| |+|||+.. ..+....++....+.... +.. ... ... .+...+.........+..+
T Consensus 53 i~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~ 132 (473)
T PRK10429 53 IWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVP 132 (473)
T ss_pred HHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhH
Confidence 334444556789999 45996654 455554444433332211 111 111 111 1111111222234567889
Q ss_pred ccc-ccchhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 350 EIY-PTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 350 Elf-Pt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
|+- .++.|+...++-..++.+++++.+.+...++
T Consensus 133 ~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~ 167 (473)
T PRK10429 133 TLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFV 167 (473)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 5899999999988888888777766554443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0058 Score=61.25 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=68.3
Q ss_pred hhhhhHHHHHHHHHhh----hChhHHH-HHHHHHHHHHHHHHHh-hc---hh--hHHHHHHHHHHHHHhhhhHhHHHhcc
Q 014265 281 LAEIPGLLLAAILVDT----AGRKLSI-TIMFTLSCLFLLPLVT-YQ---SN--ILTTGLLFGARMCVMGAFTVSLIYAA 349 (427)
Q Consensus 281 ~~~~~g~~~~~~l~d~----~GRr~~~-~~~~~~~~~~~~~~~~-~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (427)
+...+.-.+.|.++|| .|||+.. +.+....++...+... +. .. .+..+...+...+......+..+..+
T Consensus 56 i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~ 135 (444)
T PRK09669 56 VLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPG 135 (444)
T ss_pred HHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHH
Confidence 3344445567889997 6886654 4444443333322222 11 11 11111111111111222234467888
Q ss_pred ccc-ccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcch-------hHHHHHHHHHHHHHHHHHhhccCc
Q 014265 350 EIY-PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ-------MTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 350 Elf-Pt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~-------~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
|+. +++.|++..++....+.+|+.+++.+...+....+. ...+.++++++++..+.+++..+|
T Consensus 136 ~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e 206 (444)
T PRK09669 136 AITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKE 206 (444)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 887 558899999999999999888887765545443221 113344455554444444444334
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0032 Score=62.12 Aligned_cols=109 Identities=15% Similarity=0.198 Sum_probs=82.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc-chHHHH----HHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHH-HH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFS-PNYITL----ITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSS-FW 98 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a-~~~~~l----~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~-~~ 98 (427)
.|+|-|+.++++...+.+=..+.++. ++.+.. ++...+.|+..|... +...|+.|.+|++.|++..+++.. ..
T Consensus 268 ~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~ 347 (400)
T PF03825_consen 268 KRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSF 347 (400)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 48999999999999999888888776 454443 334567999999875 457788999999999999998876 56
Q ss_pred HHhHhHHHHHHHHhcCC------CCchHHHHhhhHHHHHHHH
Q 014265 99 TIGSVSEAIGAWIIMPR------LDWRWLLGLSSIPSFILLA 134 (427)
Q Consensus 99 ~iG~i~~~~~~~~~~~~------~~WR~~~~~~~i~~li~~~ 134 (427)
++|..+++.++..+.+. ..|...+.+.+...++..+
T Consensus 348 Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~ 389 (400)
T PF03825_consen 348 GLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILV 389 (400)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 89999998888776543 3466677766665555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0032 Score=62.83 Aligned_cols=124 Identities=17% Similarity=0.096 Sum_probs=72.3
Q ss_pred HHHHHHh----hhChhHHH-HHHHHHHHHHHHHHHhhch-hh---H----HHHHHHHHHHHHhhhhHhHHHhccccccc-
Q 014265 289 LAAILVD----TAGRKLSI-TIMFTLSCLFLLPLVTYQS-NI---L----TTGLLFGARMCVMGAFTVSLIYAAEIYPT- 354 (427)
Q Consensus 289 ~~~~l~d----~~GRr~~~-~~~~~~~~~~~~~~~~~~~-~~---~----~~~~~~~~~~~~~~~~~~~~~~~~ElfPt- 354 (427)
+.|.++| |.|||+.. .++....++...++....+ .+ . ..+..++...+.........+..+|+-+.
T Consensus 56 ~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~ 135 (428)
T PF13347_consen 56 LIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDP 135 (428)
T ss_pred cEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccH
Confidence 6677889 78988865 4555555555444433211 11 1 11111111122122223457799999984
Q ss_pred chhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc-------hhHHHHHHHHHHHHHHHHHhhccCc
Q 014265 355 SVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-------QMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 355 ~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~-------~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
+.|....+.-+.++.+|+++...+.+.+.+..+ ......+++++.+++.++..+..+|
T Consensus 136 ~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 136 DERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 789999999999999988777777666654322 1223344555555665666665566
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.36 Score=47.28 Aligned_cols=106 Identities=24% Similarity=0.222 Sum_probs=61.5
Q ss_pred ccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhcccc-chhhhhhhhhccCCCCchhHHHHHHHHHHHhHhHHH
Q 014265 28 NLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGS-GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEA 106 (427)
Q Consensus 28 ~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~~ 106 (427)
|.+|. ..+.+++.++-++.++++|.++=+++=.+.+++.|. +.....+. ...|++ ..+.+..+.+.+.++++
T Consensus 88 y~~Ri--~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~~----~l~~wssGTG~aGl~Ga 160 (402)
T PF02487_consen 88 YWIRI--LICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGKS----SLSAWSSGTGGAGLVGA 160 (402)
T ss_pred chHHH--HHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCcc----ccccccCCcChhhHHHH
Confidence 44444 555667777888889999999888999999999874 44434432 344543 23444555555556665
Q ss_pred HHHHHhcCCCCc--hHHHHhh-hHHHHHHHHHhhcccC
Q 014265 107 IGAWIIMPRLDW--RWLLGLS-SIPSFILLAFLGFQPE 141 (427)
Q Consensus 107 ~~~~~~~~~~~W--R~~~~~~-~i~~li~~~~~~~lpE 141 (427)
..-..+.. .++ |..+++. .+|.+.....++.+|.
T Consensus 161 ~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 161 LYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred HHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44332222 444 5554444 4455444444444543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.039 Score=55.67 Aligned_cols=103 Identities=11% Similarity=-0.056 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHHhh----hChhHHHH-HHHHHHHHHHHHHHh-hc-hhh----HHHHHHHHHHHHHhhhhHhHHHhcccc
Q 014265 283 EIPGLLLAAILVDT----AGRKLSIT-IMFTLSCLFLLPLVT-YQ-SNI----LTTGLLFGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 283 ~~~g~~~~~~l~d~----~GRr~~~~-~~~~~~~~~~~~~~~-~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~El 351 (427)
..+.-.+.|.++|| +|||+..+ ++....++...++.. .+ +.. +..+...+...+......+..+..+|+
T Consensus 58 Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~l 137 (460)
T PRK11462 58 DAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVI 137 (460)
T ss_pred HHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 33444567889995 68887654 444444443333322 11 111 111111111122222223456788888
Q ss_pred cc-cchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 352 YP-TSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 352 fP-t~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
-+ ++.|++..++-...+.+|+.+++.+...+.+.
T Consensus 138 t~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~ 172 (460)
T PRK11462 138 TNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL 172 (460)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 79999999999999999988888776555544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0097 Score=54.41 Aligned_cols=110 Identities=15% Similarity=-0.002 Sum_probs=79.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHHhhhccccchhh-hhhhhhccCCCCchhHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSF-------SPNYITLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSF 97 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~-------a~~~~~l~v~R~l~Gi~~G~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~ 97 (427)
|++|.+.++.++.....++-..... .++++++++.-++.|.+.+...++ .....+.+| ++||++.++...+
T Consensus 61 d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~ 139 (250)
T PF06813_consen 61 DRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGF 139 (250)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHH
Confidence 6999999999998888888776643 246788888888888775543332 333357787 5799999999999
Q ss_pred HHHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHh
Q 014265 98 WTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 136 (427)
Q Consensus 98 ~~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~ 136 (427)
.+++..+-+.+...+.+...-+.+......|.++.+...
T Consensus 140 ~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~ 178 (250)
T PF06813_consen 140 FGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAM 178 (250)
T ss_pred HHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHh
Confidence 999987766655555555556777767666766644443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.034 Score=58.03 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=64.7
Q ss_pred HHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHhHHHHHHHHhcC---------------CC---
Q 014265 56 TLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP---------------RL--- 116 (427)
Q Consensus 56 ~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~~~~~~~~~~---------------~~--- 116 (427)
+++++.++.|+|.--.. ...+|+=|.+.+++-+...++......+|++++.+++.+... +.
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI 318 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI 318 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh
Confidence 67888899888865543 457888899999999999999999999999998888766421 01
Q ss_pred -CchHHHHhhhHHHHHHHHHhhcccCch
Q 014265 117 -DWRWLLGLSSIPSFILLAFLGFQPESP 143 (427)
Q Consensus 117 -~WR~~~~~~~i~~li~~~~~~~lpESP 143 (427)
-|..-|++.+...++..+.++++|...
T Consensus 319 GAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 319 GAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 266666776766666666666666544
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.019 Score=58.09 Aligned_cols=135 Identities=16% Similarity=0.082 Sum_probs=89.5
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchh
Q 014265 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..++.+++.+.++.+.||++-.+.+....+.-+++.+.-...++.+...++=++..++=.+.++..-.+.+--|..+.|
T Consensus 89 ~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~ 168 (495)
T KOG2533|consen 89 VFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSER 168 (495)
T ss_pred HHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhh
Confidence 34566788889999999999955554443333333322211112222212222223333344677888899999999999
Q ss_pred hHHHHHHHHhhhHhHhhhHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHhhccCc
Q 014265 358 STGAGAANAMGRIGGMVCPLVAVALVAN------CHQMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~i~p~~~~~l~~~------~~~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
++-.|+-++.+.+|+++++++...+... .+=.+.|++-+++.+..+++++++.|+
T Consensus 169 g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 169 GLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred hhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 9999999999999999999998876431 111356788888888777777777665
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.031 Score=55.59 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=64.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHhhhccccch-hhhhh------hhhccCC-CCchhHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSP--NYITLITLRCLVGVGLGSGH-VFLSW------FLEFVPP-SNRGMWMVIFS 95 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~--~~~~l~v~R~l~Gi~~G~~~-~~~~~------~~E~~p~-~~Rg~~~~~~~ 95 (427)
+|+|+|+.+.++.+++.++.++.-+.+ |....++..++.++|.+... ...+. ..|+-.- |.-|...+...
T Consensus 297 ~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~t 376 (467)
T COG2211 297 KKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMT 376 (467)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHH
Confidence 489999999999999999999998887 78889999999999987642 22222 2466444 44477778877
Q ss_pred HHHHHhHhHHHHHHHH
Q 014265 96 SFWTIGSVSEAIGAWI 111 (427)
Q Consensus 96 ~~~~iG~i~~~~~~~~ 111 (427)
.+.=+|..++..+..+
T Consensus 377 F~~K~g~ala~~~~g~ 392 (467)
T COG2211 377 FFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777887776655444
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0075 Score=59.11 Aligned_cols=110 Identities=10% Similarity=0.012 Sum_probs=88.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHH-HHHHHHHhHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~-~~~~~~iG~i 103 (427)
.|+|-|+.++++..++++=...+++++|...+.+.+.+.|+..+... .+.-|+.+..|+|..++.-.+ .+...++|..
T Consensus 284 ~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~ 363 (412)
T PF01306_consen 284 NRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGII 363 (412)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHH
T ss_pred HhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999875 457899999999998877766 4678888988
Q ss_pred HHHHHHHHhcCCCCchHHHHhhhHHHHHHHHH
Q 014265 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 135 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~ 135 (427)
+.+.++..+.+..|.+..+++.+...++..++
T Consensus 364 i~s~~~G~lyd~~G~~~tylimg~iv~~~~li 395 (412)
T PF01306_consen 364 ILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLI 395 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHH
Confidence 88888877777778888887766655544443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.11 Score=54.43 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=60.9
Q ss_pred HHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHhhc-h----hhHHHHH---HHHHHHHHhhhhHhHHHhcccccccc-
Q 014265 286 GLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQ-S----NILTTGL---LFGARMCVMGAFTVSLIYAAEIYPTS- 355 (427)
Q Consensus 286 g~~~~~~l~d~-~GRr~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~ElfPt~- 355 (427)
..++++++.|+ +||++.+..+.++..+....+.... + ....... +.+...+..+.-+...+...|.|+.+
T Consensus 39 ~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~ 118 (654)
T TIGR00926 39 TPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ 118 (654)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc
Confidence 34678899997 6999988877665444333332211 0 1111111 11111111222235566777888743
Q ss_pred --hhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 356 --VRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 356 --~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
.|...+.+.+...++|+++++.+.+++.+.
T Consensus 119 ~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~ 150 (654)
T TIGR00926 119 LSLRSRFFSFFYFAINAGSLISTIITPILRGD 150 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888999999999999999999988644
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.86 Score=43.66 Aligned_cols=127 Identities=17% Similarity=0.068 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHh---------HHHhcccccccc
Q 014265 285 PGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV---------SLIYAAEIYPTS 355 (427)
Q Consensus 285 ~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ElfPt~ 355 (427)
+...+.|.+.||+|||+..+...+.-.+..+.-.. ++. -.+++..+....+-++ ..-....-||.+
T Consensus 84 i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~--~~~---~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~ 158 (354)
T PF05631_consen 84 IFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS--SNY---PVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE 158 (354)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc--ccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 33456788999999999876654443333322111 111 1111111111111111 111233457777
Q ss_pred hhhHHHHHHHHh-hhHhHhhhHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHhhccCccCCc
Q 014265 356 VRSTGAGAANAM-GRIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETKGQ 416 (427)
Q Consensus 356 ~R~~~~g~~~~~-~~~~~~i~p~~~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~l~pEtkg~ 416 (427)
-.+..++.+... +.+.++.+..+...+.+..+ +..|+..-..+++++.+++...-+|..|.
T Consensus 159 ~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 159 WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 777777655533 33455555566555555433 45677776667777777776655687665
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.028 Score=47.41 Aligned_cols=86 Identities=16% Similarity=0.073 Sum_probs=69.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhh-hhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
.+.|.|+++.++.+.+.+....- +-+|.+.++.+-.+.|++.+...+. ..|+.|...++.|++-.+++-.....+.++
T Consensus 62 ~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~ 140 (156)
T PF05978_consen 62 NKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIF 140 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 68999999999999988666543 5678889999999999999987554 678899999999999888777666677777
Q ss_pred HHHHHHHh
Q 014265 105 EAIGAWII 112 (427)
Q Consensus 105 ~~~~~~~~ 112 (427)
+.++.+.+
T Consensus 141 G~~~~~~~ 148 (156)
T PF05978_consen 141 GNLFLFFI 148 (156)
T ss_pred HHHHHHHH
Confidence 76655544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.018 Score=55.88 Aligned_cols=104 Identities=16% Similarity=0.084 Sum_probs=83.2
Q ss_pred chhh-hccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccchhh-hhhhhhccCCCCchhHHHHHHHHHHH
Q 014265 23 PHLW-QNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 23 ~~~~-~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
+.+| |+|-|+++..+++++++..+...+...-..+.++=.+.|.+.|+.+.. -+|+.+.+||++-++..++++.+--.
T Consensus 309 g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra 388 (438)
T COG2270 309 GFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRA 388 (438)
T ss_pred HHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhH
Confidence 4454 899999999999999999998888888778888889999999998865 58999999999999999999998888
Q ss_pred hHhHHHHHHHHhcC-CCCchHHHHhhh
Q 014265 101 GSVSEAIGAWIIMP-RLDWRWLLGLSS 126 (427)
Q Consensus 101 G~i~~~~~~~~~~~-~~~WR~~~~~~~ 126 (427)
++..++.+...+.. ..+=|.-+....
T Consensus 389 ~S~~gp~lv~v~t~iTg~~r~g~~~i~ 415 (438)
T COG2270 389 ASFLGPFLVAVITQITGSSRAGVLSII 415 (438)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 88888776554432 234565444433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.058 Score=53.92 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=76.9
Q ss_pred HHHHHHHhhh---C-hhH-HHHHHHHHHHHHHHHHHhh-c---hhhHHHHHHHHHHHHHhhhhHhHHHhcccc---cccc
Q 014265 288 LLAAILVDTA---G-RKL-SITIMFTLSCLFLLPLVTY-Q---SNILTTGLLFGARMCVMGAFTVSLIYAAEI---YPTS 355 (427)
Q Consensus 288 ~~~~~l~d~~---G-Rr~-~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~El---fPt~ 355 (427)
.+-|.++|-+ | ||+ -++++..++.+....+... . +.....+.+++..++....-...-+...|. -|.+
T Consensus 42 p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~ 121 (433)
T PF03092_consen 42 PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES 121 (433)
T ss_pred hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence 4678899965 3 444 4455655554444433331 1 112222333333333333334455566666 4556
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCc
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 416 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~ 416 (427)
|+.-.+.++.+..+|++++..+.+.+.+..+....+.+.+.+..+..+..+++.+|.+.+
T Consensus 122 -~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~ 181 (433)
T PF03092_consen 122 -RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVR 181 (433)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcccc
Confidence 888888888888899999988888887776655556666666666666777777774433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.039 Score=53.95 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHHhhc---cchH------HHHHHHHHHhhhccccc-hhhhhhhhhccCCCC---chhHHHHHHHHH
Q 014265 32 MGFLGEALVTAGAGLLSSF---SPNY------ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN---RGMWMVIFSSFW 98 (427)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~---a~~~------~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~ 98 (427)
|+++++.+++.+|.++..+ -++. ..++++-++.++|.|+. +.+.+..++..+++. |......+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 5677888888888887332 2222 57999999999999998 556788888888763 444556677788
Q ss_pred HHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHh
Q 014265 99 TIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 136 (427)
Q Consensus 99 ~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~ 136 (427)
++|.+++.....++..+.+|.+.|++.++..++.+..+
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 88888877666666677999999999887766554443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.045 Score=54.73 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=89.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHH-HHHHhHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSS-FWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~-~~~iG~i 103 (427)
.|+|+-+++.+.+....+==+...+.+|.|+.+-.-+++|+..+... +..+|+...+||+.|..+.++.+. +.++|--
T Consensus 431 ~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g 510 (618)
T KOG3762|consen 431 EKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKG 510 (618)
T ss_pred HHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcc
Confidence 38999998988888877766777889999999999999999999886 467899999999999999887776 6777777
Q ss_pred HHHHHHHHhcCCCCchHHHHhhhHHHHHHHHH
Q 014265 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 135 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~ 135 (427)
.+++++..+....+=|..|...++-+++.+..
T Consensus 511 ~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 511 LGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred hhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 78888777777778788776666655554443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.11 Score=54.41 Aligned_cols=109 Identities=15% Similarity=0.034 Sum_probs=73.1
Q ss_pred hccchhHHHHHHHHHHHHHHHhhccch--------HHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCc---hhHHHHH
Q 014265 27 QNLVRMGFLGEALVTAGAGLLSSFSPN--------YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNR---GMWMVIF 94 (427)
Q Consensus 27 ~~GRk~~~~~~~~~~~~~~~~~~~a~~--------~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~R---g~~~~~~ 94 (427)
++||++++.+..++..++-++.+++.. ...++++=.+..+|.|+. +...+...+..+++++ -.+..++
T Consensus 50 ~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~f 129 (654)
T TIGR00926 50 WLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFF 129 (654)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHH
Confidence 799999999999998888887766421 234667777788888876 4566777777765543 3444555
Q ss_pred HHHHHHhHhHHHHHHHHhcC-------CCCchHHHHhhhHHHHHHHHH
Q 014265 95 SSFWTIGSVSEAIGAWIIMP-------RLDWRWLLGLSSIPSFILLAF 135 (427)
Q Consensus 95 ~~~~~iG~i~~~~~~~~~~~-------~~~WR~~~~~~~i~~li~~~~ 135 (427)
..+.++|.+++..+..++.. ..+|...|.+.++.+++.++.
T Consensus 130 Y~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 130 YFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 55566666666555444431 347999999887776654433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.3 Score=47.55 Aligned_cols=50 Identities=20% Similarity=0.112 Sum_probs=43.4
Q ss_pred hhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchh
Q 014265 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQM 389 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~ 389 (427)
.-....+..+|+-|++.|+++.++.+.+--+|-+++..+.+.+++.++..
T Consensus 106 s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 106 SGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE 155 (403)
T ss_pred hHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 44567889999999999999999999999999999999999888876643
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.097 Score=49.79 Aligned_cols=97 Identities=9% Similarity=-0.025 Sum_probs=64.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|+|+.+.++.++..++.++....++...+ .+=++.|++.+.. |...+...|..|++ .++..++. .+..+|..+
T Consensus 203 ~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i 279 (310)
T TIGR01272 203 PMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAI 279 (310)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchH
Confidence 48999998888888877777666555544333 3455778887766 45566777777764 34455554 455577777
Q ss_pred HHHHHHHhcCCCCchHHHHhh
Q 014265 105 EAIGAWIIMPRLDWRWLLGLS 125 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~ 125 (427)
.+.+...+....|-+..+++.
T Consensus 280 ~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 280 VPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHHHHHHHhccchHHHHHH
Confidence 777666666667877777643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.9 Score=44.80 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=65.5
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH--HHhhc---hhhHHHHHHHHHHHHHh--hhh--HhHHHh
Q 014265 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP--LVTYQ---SNILTTGLLFGARMCVM--GAF--TVSLIY 347 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~--~~~--~~~~~~ 347 (427)
.+..+..++-.+.+.|+.||.|-|.....+....++.... +.... +.-.. .+...++.... ..+ .++.-.
T Consensus 86 mIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~-~l~~~Gq~iaa~Aq~Fim~lPski 164 (480)
T KOG2563|consen 86 MIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRR-PLTHTGQSIAAAAQPFILGLPSKI 164 (480)
T ss_pred HHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchh-hhhHHhHHHHHHhhhHhhccccHH
Confidence 3344556777788899999999999887766655433221 11111 11122 12222222111 111 233455
Q ss_pred cccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh
Q 014265 348 AAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 348 ~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~ 385 (427)
..--||++.|+++..++.+.+.+|..++-.+-+.+..+
T Consensus 165 A~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 165 AAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred HHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 66679999999999999998888888876666655544
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=94.82 E-value=5.1 Score=40.43 Aligned_cols=44 Identities=5% Similarity=-0.101 Sum_probs=39.2
Q ss_pred hhH-hHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 340 AFT-VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 340 ~~~-~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
..+ +.|.+.+|++.++.-.+-+++....+++|.++++.+..++.
T Consensus 145 vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 145 VLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 77999999999999999999999999999999998877665
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.5 Score=36.98 Aligned_cols=104 Identities=12% Similarity=-0.032 Sum_probs=64.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
..+......++.+++..+++++|.|+.++.+.+.-.+....... .+.+.......+..++....|.....|.+|.-..+
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~ 121 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE 121 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence 33334445566777888999999999998877655444433222 22221111111122222334556667788888889
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHH
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAV 380 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~ 380 (427)
.|++-.|+...+.+.+.+++..+..
T Consensus 122 ~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 122 TIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888877777765544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.2 Score=44.70 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=76.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCh-hHHHHHHHHHHHHHHHHH-H-hhchhhHHHHHHHHHHHHH---hhhhHhHHHhcc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGR-KLSITIMFTLSCLFLLPL-V-TYQSNILTTGLLFGARMCV---MGAFTVSLIYAA 349 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GR-r~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 349 (427)
.-...++...++++.++...|.+. |+.++.+.+++.+..+.. . .+..+....+ +..+.++. .+..+..-.|.+
T Consensus 77 iaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~-mL~~R~l~Gvg~~n~a~lR~Y~a 155 (488)
T KOG2325|consen 77 IAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYL-MLVARILTGVGVGNFAVLRAYIA 155 (488)
T ss_pred HHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHcCcCcccHHHHHHHHH
Confidence 334567777778888888888874 555555555544433332 2 2233322222 22233221 234567788888
Q ss_pred cccccchhhHHHHHHHHhhhHhHhhhHHHHHHHH---hh---------cc-hhHHHHHHHHHHHHHHHHHhhccCc
Q 014265 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV---AN---------CH-QMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 350 ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~---~~---------~~-~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
..--.+.|.++++......-+|.+++|.+.+.+. +. .+ ...+.++.+.+.++..+...++..|
T Consensus 156 ~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 156 DASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred hccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 8777777888777776655556666665443322 11 00 1346677777777776666665444
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.97 E-value=2.7 Score=38.70 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=46.6
Q ss_pred hhhhhccch--hhhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccch-hhhhh-hhhccCC
Q 014265 16 NIFMFRLPH--LWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSW-FLEFVPP 84 (427)
Q Consensus 16 ~~~~~~~~~--~~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~-~~E~~p~ 84 (427)
+.+|+.+.. .||-|||+.-..-++.++++ .++.-+|.|-.+.++|.+.|++..... +--+| ++|...+
T Consensus 85 smLFGtivgSLaDkqGRKracvtycitYiLs-CiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnek 156 (454)
T KOG4332|consen 85 SMLFGTIVGSLADKQGRKRACVTYCITYILS-CITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEK 156 (454)
T ss_pred HHHHHHHHHHHHhhhccccceeeehHHHHHH-HHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhc
Confidence 344444332 37999998766655555443 456789999999999999999987653 44455 4687644
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.78 E-value=8.1 Score=38.65 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=28.8
Q ss_pred hHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHH
Q 014265 341 FTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLV 378 (427)
Q Consensus 341 ~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~ 378 (427)
.+..+.+.++..+++.|-.+..+...+-.+|-.++..+
T Consensus 390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999888777777666666655544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.1 Score=40.88 Aligned_cols=104 Identities=27% Similarity=0.236 Sum_probs=59.4
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHhhhhHhHHHhccccccc-chh
Q 014265 281 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS--NILTTGLLFGARMCVMGAFTVSLIYAAEIYPT-SVR 357 (427)
Q Consensus 281 ~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt-~~R 357 (427)
+....+..+.|.+.||.|||+.+..+........+....... ............+...........+.+|.+|. +.|
T Consensus 50 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (338)
T COG0477 50 LGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATER 129 (338)
T ss_pred HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHH
Confidence 344455578899999999997766655431111111112121 11111111111222223445678899999998 678
Q ss_pred hHHHHHHHH-hhhHhHhhhHHHHHHHHh
Q 014265 358 STGAGAANA-MGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 358 ~~~~g~~~~-~~~~~~~i~p~~~~~l~~ 384 (427)
+...+.... ...++..++|.+...+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 130 GLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777 466777777765554443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=90.46 E-value=11 Score=34.60 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=37.0
Q ss_pred CCCchhHHHHHHHHHHHhHhHHHHHHHHh-----cCCCCchHHHHhhhHHHHHHHHHhh
Q 014265 84 PSNRGMWMVIFSSFWTIGSVSEAIGAWII-----MPRLDWRWLLGLSSIPSFILLAFLG 137 (427)
Q Consensus 84 ~~~Rg~~~~~~~~~~~iG~i~~~~~~~~~-----~~~~~WR~~~~~~~i~~li~~~~~~ 137 (427)
.|+|+..+.+...+.++|.++.-+..... .....|++++.+.++..++.++.+.
T Consensus 1 ~k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ 59 (267)
T PF07672_consen 1 QKKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYI 59 (267)
T ss_pred CCccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888899999998764332111 1134699999888877766555543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=89.28 E-value=24 Score=34.86 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=66.9
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHh
Q 014265 288 LLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAM 367 (427)
Q Consensus 288 ~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~ 367 (427)
+....+.|.+|-|+.++...+.....-..+.+.++....-..=+.... ..++-...+.|+=-.-|++.--+..+.+.+.
T Consensus 59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~-~~a~evay~sYiys~v~~~~yq~vts~~raa 137 (412)
T PF01770_consen 59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGL-ATAAEVAYYSYIYSVVDKEHYQKVTSYTRAA 137 (412)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHH-HHHHHHHHHHHheeecCHHHHHHHHHHHHHH
Confidence 456788999999999887665544443333333322211111111111 1122234455555566777777888888887
Q ss_pred hhHhHhhhHHHHHHHHhhcchhH--HHHHHHHHHHHHHHHHhhccC
Q 014265 368 GRIGGMVCPLVAVALVANCHQMT--AVVLLVVVIVTSILSVMLIPF 411 (427)
Q Consensus 368 ~~~~~~i~p~~~~~l~~~~~~~~--~~~~~~~~~~i~~~~~~~l~p 411 (427)
.-+|.+++..+.-.+....+... ...+-.+...++.+..+++|+
T Consensus 138 ~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 138 TLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777777766665554332222 222222334566666677764
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.71 E-value=1.5 Score=40.78 Aligned_cols=106 Identities=13% Similarity=0.032 Sum_probs=67.7
Q ss_pred hhccchhHHHHHHHHHHHHHH-HhhccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHhHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGL-LSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~-~~~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i 103 (427)
||+||+.....+.++.-+.+- ...|+ +..-+++-.+.|++-...- ...+.++-+.|.+.-|++-++.+.-.++|..
T Consensus 325 Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla 402 (459)
T KOG4686|consen 325 DKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLA 402 (459)
T ss_pred hhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhh
Confidence 499999877776555544433 33333 4444556666666533221 2344566778999999999999999999999
Q ss_pred HHHHHHHHhcCCCC---chHHHHhh-hHHHHHHH
Q 014265 104 SEAIGAWIIMPRLD---WRWLLGLS-SIPSFILL 133 (427)
Q Consensus 104 ~~~~~~~~~~~~~~---WR~~~~~~-~i~~li~~ 133 (427)
+.++++.++....+ |--.|.+. +..++...
T Consensus 403 ~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~sv 436 (459)
T KOG4686|consen 403 FIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSV 436 (459)
T ss_pred HHhhhhheeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 98888887755433 55455443 33344433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=87.61 E-value=2.3 Score=41.80 Aligned_cols=64 Identities=20% Similarity=0.182 Sum_probs=54.8
Q ss_pred hccchHHHHHHHHHHhhhccccchhhh-hhhhhccCCCCchhHHHHHHHHHHHhHhHHHHHHHHh
Q 014265 49 SFSPNYITLITLRCLVGVGLGSGHVFL-SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII 112 (427)
Q Consensus 49 ~~a~~~~~l~v~R~l~Gi~~G~~~~~~-~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~~~~~~~~~ 112 (427)
-|.+|.+..++.-|..|+.-|..++.. ..+.|-.|+++|...++..+.+-+.|..++++++..+
T Consensus 330 ~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 330 RFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 357889999999999999988888764 4567888999999999999999999999998887664
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.45 E-value=3.3 Score=41.00 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=62.6
Q ss_pred hhccchhh--hccchhHHHHHHHHH-HHHHHHhhccchHHH------------HHHHHHHhhhcc---ccc--h-hhhhh
Q 014265 19 MFRLPHLW--QNLVRMGFLGEALVT-AGAGLLSSFSPNYIT------------LITLRCLVGVGL---GSG--H-VFLSW 77 (427)
Q Consensus 19 ~~~~~~~~--~~GRk~~~~~~~~~~-~~~~~~~~~a~~~~~------------l~v~R~l~Gi~~---G~~--~-~~~~~ 77 (427)
.+..+|.+ |||||+.++.+..+. .++-++..++..... .-+.-++.|+.. ... . ..=++
T Consensus 87 vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~ 166 (498)
T KOG0637|consen 87 VGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRAL 166 (498)
T ss_pred ccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHH
Confidence 34555654 899998888865554 444446667665543 445555666652 221 2 23356
Q ss_pred hhhccCCCCchh-HHHHHHHHHHHhHhHHHHHHHHhcCCCCchHHH
Q 014265 78 FLEFVPPSNRGM-WMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL 122 (427)
Q Consensus 78 ~~E~~p~~~Rg~-~~~~~~~~~~iG~i~~~~~~~~~~~~~~WR~~~ 122 (427)
+....-+..|.+ +.+++..+..+|++++..++. ..+|+-.|
T Consensus 167 L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~----y~~~~~~~ 208 (498)
T KOG0637|consen 167 LADLARGDAKKTRANSVFSFFMAVGNVLGYALGS----YLGLYKIF 208 (498)
T ss_pred HHHhccChhhhhccchhHHHHHHhcceeeeeccc----ccCceEEe
Confidence 666666555544 899999999999998765443 45777654
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=83.78 E-value=11 Score=37.94 Aligned_cols=68 Identities=9% Similarity=0.065 Sum_probs=35.3
Q ss_pred HHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh-----------------cchhHHHHHHHHHHHHHHHHH
Q 014265 344 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN-----------------CHQMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 344 ~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~-----------------~~~~~~~~~~~~~~~i~~~~~ 406 (427)
.-.+.-.+..++.++-| +.|+++|.-.|.+..+....-+++ ..-...+.+++.+.++..+.+
T Consensus 139 VDGWALT~Ls~~n~~~A-STcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v 217 (544)
T PF13000_consen 139 VDGWALTMLSPENVGYA-STCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILV 217 (544)
T ss_pred eehhhhhhcChhhcchH-HHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777666 567777765444444433322221 011223345565555555666
Q ss_pred hhccCc
Q 014265 407 MLIPFE 412 (427)
Q Consensus 407 ~~l~pE 412 (427)
.++..|
T Consensus 218 ~~~k~E 223 (544)
T PF13000_consen 218 AFFKKE 223 (544)
T ss_pred heEeec
Confidence 666555
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=83.65 E-value=14 Score=26.86 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHH
Q 014265 274 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF 307 (427)
Q Consensus 274 ~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~ 307 (427)
+...+..+..+++..+.+.++||.+|++......
T Consensus 39 il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 39 ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS 72 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 3344556677888889999999999988776543
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=81.89 E-value=0.52 Score=44.76 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=3.0
Q ss_pred hHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHH
Q 014265 341 FTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLV 378 (427)
Q Consensus 341 ~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~ 378 (427)
.+..+.+.++..+++.|-.+..+...+-.+|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999988888766666655555555443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.02 E-value=56 Score=31.72 Aligned_cols=116 Identities=14% Similarity=0.047 Sum_probs=63.8
Q ss_pred HHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhH-HHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHH
Q 014265 287 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL-TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAAN 365 (427)
Q Consensus 287 ~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~ 365 (427)
..+...+.+|+|-++.+..+.+..+.... .-...... ...-......++.....+....+=|-||.+.-. .+|+..
T Consensus 64 ap~a~~Lar~~g~er~l~~~Llli~~G~~--iR~~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~-mtglYs 140 (395)
T COG2807 64 APAAPRLARRFGEERSLFLALLLIAAGIL--IRSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGL-MTGLYS 140 (395)
T ss_pred HhhhHHHHHHHhhHHHHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhh-HHhHHH
Confidence 34556677777777776665443322211 11111111 111111122223334456677888899887644 456666
Q ss_pred HhhhHhHhhhHHHHHHHHhhcch-hHHHHHHHHHHHHHHHH
Q 014265 366 AMGRIGGMVCPLVAVALVANCHQ-MTAVVLLVVVIVTSILS 405 (427)
Q Consensus 366 ~~~~~~~~i~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~ 405 (427)
..-.+++.+++.+.+.+.+..+. .....+++..++++.+.
T Consensus 141 ~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~ 181 (395)
T COG2807 141 TSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI 181 (395)
T ss_pred HHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 66667777888777777665432 34566777777777544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 427 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 8e-10 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 8e-10
Identities = 61/404 (15%), Positives = 114/404 (28%), Gaps = 78/404 (19%)
Query: 33 GFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-----VFLSWFLEFVPPSNR 87
G + A V G + + + + L L G G G + W+ R
Sbjct: 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----SQKER 153
Query: 88 GMWMVIFSSFWTIGS-VSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ----PES 142
G + +++ +G + + + DW L + + + ++ F P+S
Sbjct: 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS 213
Query: 143 PRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN 202
E + K + + LP N
Sbjct: 214 CGL----PPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP------------------N 251
Query: 203 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262
K + + L R IL W + L
Sbjct: 252 KLL-----WYIAIANVFVYLLRYGILDWSPTY--------------------------LK 280
Query: 263 FSHH--PQDANLYIDEFITSLAEIPGLLLAAILVD---TAGRKLSITIMFTLS--CLFLL 315
H ++ F+ A IPG LL + D R + TL +
Sbjct: 281 EVKHFALDKSSWAY--FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338
Query: 316 PLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVC 375
+ + + + + G + ++A E+ P T AG G +GG V
Sbjct: 339 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 398
Query: 376 PLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETKGQE 417
V + +V++ I+ IL ++++ E + E
Sbjct: 399 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 442
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.91 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.85 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.84 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.82 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.3 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.16 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.15 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.03 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.96 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.59 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.34 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-44 Score=358.44 Aligned_cols=362 Identities=20% Similarity=0.217 Sum_probs=256.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc------------------cchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCC
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSF------------------SPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSN 86 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~------------------a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~ 86 (427)
||+|||++++++++++.++++++++ ++|+.+++++|+++|++.|+.. +...|+.|++|+++
T Consensus 80 Dr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~ 159 (491)
T 4gc0_A 80 NRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI 159 (491)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh
Confidence 5999999999999999999999984 7899999999999999999975 56788999999999
Q ss_pred chhHHHHHHHHHHHhHhHHHHHHHHhc--------CCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHH
Q 014265 87 RGMWMVIFSSFWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRA 158 (427)
Q Consensus 87 Rg~~~~~~~~~~~iG~i~~~~~~~~~~--------~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~ 158 (427)
||+..++.+.++.+|.+.+..+++... ..+.||+++.+..+++++..+.++++|||||||..|+|.||+++.
T Consensus 160 rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~ 239 (491)
T 4gc0_A 160 RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGI 239 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHH
T ss_pred hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHh
Confidence 999999999999999998887776643 235699999999999999888889999999999999999999999
Q ss_pred HHHHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHH
Q 014265 159 LEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSF 238 (427)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (427)
+++..+.+..+. +.. +..+...+ .++ ......+++ .++..+.....++.+..
T Consensus 240 l~~~~~~~~~~~---~~~--------------~~~~~~~~-----~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~ 291 (491)
T 4gc0_A 240 LRKIMGNTLATQ---AVQ--------------EIKHSLDH-----GRK----TGGRLLMFG--VGVIVIGVMLSIFQQFV 291 (491)
T ss_dssp HHHHHHHHHHHH---HHH--------------HHHHHHHH-----HHH----HTTHHHHSC--CTHHHHHHHHHHHHHHT
T ss_pred HHHhcCCchhHH---HHH--------------HHHHHHHh-----hhh----hhhHHHHhc--ccHHHHHHHHHHHHHHh
Confidence 988765432110 000 00000000 000 001111222 22222233333344444
Q ss_pred HHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 014265 239 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV 318 (427)
Q Consensus 239 ~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~ 318 (427)
.++.+..+.+.+.... ............+.++..+++.+++++++||+|||+.+..+...+.++.+.+.
T Consensus 292 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp CHHHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence 4444444545443211 11222334455666778888999999999999999998877766555544433
Q ss_pred h--h-c-hhhHHHHHHHH-HHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhh------cc
Q 014265 319 T--Y-Q-SNILTTGLLFG-ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN------CH 387 (427)
Q Consensus 319 ~--~-~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~------~~ 387 (427)
. . . +.......... ...+..+..++.+.+++|+||+++|+++.|+++++++++++++|++.|.+.+. .+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~ 440 (491)
T 4gc0_A 361 TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH 440 (491)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 1 1 12222222222 12223334467899999999999999999999999999999999988876543 12
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCccCCccccccccccC
Q 014265 388 QMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTS 426 (427)
Q Consensus 388 ~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~l~e~~~~~~ 426 (427)
...++++++++++++.++++++.||||||++||+++..|
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred hhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 335678889999999888888889999999999776544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=233.32 Aligned_cols=335 Identities=13% Similarity=0.142 Sum_probs=221.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSF----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~----a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
||+|||+.++++.++.+++.++.++ ++|+++++++|+++|++.|.. +...+++.|++|+++|+++.++.+....+
T Consensus 87 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 166 (451)
T 1pw4_A 87 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 166 (451)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHH
Confidence 5999999999999999999999999 999999999999999999876 45678899999999999999999999999
Q ss_pred hHhHHHHHHHHhcCCCC-chHHHHhhhHHHHHHH-HHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccc
Q 014265 101 GSVSEAIGAWIIMPRLD-WRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 101 G~i~~~~~~~~~~~~~~-WR~~~~~~~i~~li~~-~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
|.++++.++..+....+ ||+.|++.++..++.. +..+.+||+|+....+.+.++ +++
T Consensus 167 g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--------- 225 (451)
T 1pw4_A 167 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY------------KND--------- 225 (451)
T ss_dssp HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT------------CCC---------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh------------ccc---------
Confidence 99999888876556677 9999998887776644 445678999875321111000 000
Q ss_pred cccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 014265 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
.+. +. ++ ++++....++ ...+.+++++ +.+......+.....+++...+.|.+....
T Consensus 226 ~~~---------~~----~~-~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 282 (451)
T 1pw4_A 226 YPD---------DY----NE-KAEQELTAKQ--IFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEV---- 282 (451)
T ss_dssp ---------------------------CCTH--HHHHHTSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----
T ss_pred ccc---------cc----hh-hhhccccccc--chHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 000 00 00 0000000000 1123334322 222333333444555666666666554210
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh--ChhHHHHHHHHHHH-HHHHHHHhhc--hhhHHHHHHHHH
Q 014265 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA--GRKLSITIMFTLSC-LFLLPLVTYQ--SNILTTGLLFGA 333 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~--GRr~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~ 333 (427)
.+.+.........+..++.+++.++.+.+.||+ |||+.+..+..+.. +..+.+.... +.+......+..
T Consensus 283 ------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (451)
T 1pw4_A 283 ------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 356 (451)
T ss_dssp ------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred ------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 111222222334455667788889999999999 99998876655443 3333222221 222222223333
Q ss_pred HHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhH-hHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 014265 334 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 334 ~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~-~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
.++..+.....+.+..|.+|++.|+++.|+.+.+.++ ++.++|.+.+.+.+..+....+.+++++.+++.++..++.
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 357 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566788999999999999999999999999 9999999999888876655667777777777766665554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-24 Score=211.44 Aligned_cols=306 Identities=11% Similarity=-0.011 Sum_probs=203.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHh---hccchHHHHHHHHHHhhhccccch-hhhhhhhhccCCCCchhHHHHHHHHHHHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLS---SFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~---~~a~~~~~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||+.++++.++.+++.++. ++++|+++++++|++.|++.|... ...+++.|+.|+++|++..++.+....+|
T Consensus 86 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 165 (438)
T 3o7q_A 86 KKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG 165 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 59999999999999999999999 899999999999999999998864 56788999999999999999999999999
Q ss_pred HhHHHHHHHHhc-CCCC-------------------------chHHHHhhhHHHHHHHHHh--hcccCchhHHhhcCchH
Q 014265 102 SVSEAIGAWIIM-PRLD-------------------------WRWLLGLSSIPSFILLAFL--GFQPESPRYLCLKGRTA 153 (427)
Q Consensus 102 ~i~~~~~~~~~~-~~~~-------------------------WR~~~~~~~i~~li~~~~~--~~lpESP~~L~~~gr~~ 153 (427)
.++++.++..+. ...+ ||+.+++.++..++..+.. ...||+++.. +
T Consensus 166 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~-- 239 (438)
T 3o7q_A 166 AIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN----H-- 239 (438)
T ss_dssp HHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC----C--
T ss_pred HHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc----c--
Confidence 999998877665 4443 9999977766655443332 2346654310 0
Q ss_pred HHHHHHHHHhhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHH
Q 014265 154 EAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLL 233 (427)
Q Consensus 154 ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (427)
+ ++ + .......++++++.+......+. .
T Consensus 240 ---------------~--------------~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~---~ 267 (438)
T 3o7q_A 240 ---------------S--------------DA-K-------------------QGSFSASLSRLARIRHWRWAVLA---Q 267 (438)
T ss_dssp ---------------C--------------CS-S-------------------TTSHHHHHHHHTTCSHHHHHHHH---H
T ss_pred ---------------c--------------cc-c-------------------ccchhhhHHHHHhChHHHHHHHH---H
Confidence 0 00 0 00011244455554333322222 2
Q ss_pred HHHHHHHHHHHHHHHHh-hcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHH
Q 014265 234 FGNSFAYYAVVLLISEL-SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL 312 (427)
Q Consensus 234 ~~~~~~~y~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~ 312 (427)
+.....+++...+.+.+ .... .+.+.........+..+..+++.++.+++.||+|||+.+..+..+..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 268 FCYVGAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22233334444444443 2110 011111222334445667788889999999999999998887766655
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc-hhHH
Q 014265 313 FLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTA 391 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~-~~~~ 391 (427)
..+......+... ........++....++..+.+..|.+|++ |+++.++.. ++.+++.++|.+.+.+.+..+ ....
T Consensus 338 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~ 414 (438)
T 3o7q_A 338 LCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_dssp HHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred HHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 5544443333322 22223333444455677889999999988 999999887 788999999999998887765 4445
Q ss_pred HHHHHHHHHHH
Q 014265 392 VVLLVVVIVTS 402 (427)
Q Consensus 392 ~~~~~~~~~i~ 402 (427)
+.+.+++.++.
T Consensus 415 ~~~~~~~~~~~ 425 (438)
T 3o7q_A 415 ELIPALCFAVI 425 (438)
T ss_dssp GHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55544444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-23 Score=207.32 Aligned_cols=360 Identities=11% Similarity=-0.011 Sum_probs=191.6
Q ss_pred hh-ccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCC--chhHHHHHHHHHHHh
Q 014265 26 WQ-NLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~-~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~iG 101 (427)
|| +|||+++..+.++..++.++.++++|+++++++|++.|++.|.. +...+++.|++|+++ |+...+..+....+|
T Consensus 79 dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 158 (491)
T 4aps_A 79 DRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLG 158 (491)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHH
Confidence 59 79999999999999999999999999999999999999999876 456788899999998 677778888999999
Q ss_pred HhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhc-----ccCchhHHhhcCchHHHHHHHHH--------------H
Q 014265 102 SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF-----QPESPRYLCLKGRTAEAHRALEK--------------I 162 (427)
Q Consensus 102 ~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~-----lpESP~~L~~~gr~~ea~~~l~~--------------~ 162 (427)
..+++.++..+....+||+.|++.++..++..+.... .++..+--..+.+.+|.++..++ +
T Consensus 159 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 238 (491)
T 4aps_A 159 AFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVM 238 (491)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887777789999999887665544333221 11111100111123333333322 0
Q ss_pred hhhcCCCCCCcccccccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHH----HHHHHHH
Q 014265 163 AQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWL----LLFGNSF 238 (427)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~ 238 (427)
...++.+.+ +....... . ... ..........+. + .. . ...+++.. .....+. .+.....
T Consensus 239 ~~~~~~~~~--~~~~~~~~-~-~~~--~~~~~~~~~~~~-~-~~------~--~~~~~~~~-~~~~~~~~~~~~~~~~~~ 301 (491)
T 4aps_A 239 NLVGWNSLP--AYINLLTI-V-AIA--IPVFYFAWMISS-V-KV------T--STEHLRVV-SYIPLFIAAVLFWAIEEQ 301 (491)
T ss_dssp HHHSSCCTT--HHHHHHHH-H-HHH--HHHHHHHHHC----------------------CT-THHHHHHHHHHHHHHHGG
T ss_pred HhccCcccc--cchhhhhH-H-HHH--HHHHHHHHHhhc-c-cc------c--HHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 111110000 00000000 0 000 000000000000 0 00 0 00001111 1111111 1111111
Q ss_pred HHHHHHHHHHHhhcccccCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHH-----HHHHHHHHH
Q 014265 239 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT-----IMFTLSCLF 313 (427)
Q Consensus 239 ~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~-----~~~~~~~~~ 313 (427)
.......+..+.... .....+ .......+...++..+.+.+.||+|||+... .+..+.++.
T Consensus 302 ~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 302 GSVVLATFAAERVDS------------SWFPVS--WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp GGTHHHHHHHHSCCC------------SSSCSG--GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcc------------CccCHH--HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 111111111211100 000111 1112233445566777889999999986543 333333333
Q ss_pred HHHHHhhc---------hhhHHHHHHHHHHHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHHh
Q 014265 314 LLPLVTYQ---------SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 314 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~ 384 (427)
...+.... +.+..........++........+.+..|.+|++.|+++.|+.+...++|++++|.+.+.+.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222211 112222222222222233345678999999999999999999999999999999999876544
Q ss_pred hcchhHHHHHHHHHHHHHHHHHhhccCccCCcc
Q 014265 385 NCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~ 417 (427)
. +....+.+++.+++++.+..+++.|+++++.
T Consensus 448 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 448 K-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp S-STTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3445677777777777777777777776654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-22 Score=191.97 Aligned_cols=119 Identities=12% Similarity=0.045 Sum_probs=105.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHHhHhH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~i~ 104 (427)
||+|||+.+.++.++.+++.++.++++|+..+++.|++.|++.|.. +....++.|+.|+++|++..+..+....+|.++
T Consensus 60 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 139 (375)
T 2gfp_A 60 DRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL 139 (375)
T ss_dssp TTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999876 456788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHhhhHHHHHHHH-HhhcccCchh
Q 014265 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPR 144 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~li~~~-~~~~lpESP~ 144 (427)
++.++..+....+||..+.+.++..++..+ ..+.+||+|+
T Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 999888877667999999988877766554 4556788775
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=186.01 Aligned_cols=335 Identities=13% Similarity=0.026 Sum_probs=180.7
Q ss_pred hhccchhHHHHHHHHHHHHHH---HhhccchHH-HHHHHHHHhhhccccch-hhhhhhhhccCC--CCchhHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGL---LSSFSPNYI-TLITLRCLVGVGLGSGH-VFLSWFLEFVPP--SNRGMWMVIFSSFW 98 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~---~~~~a~~~~-~l~v~R~l~Gi~~G~~~-~~~~~~~E~~p~--~~Rg~~~~~~~~~~ 98 (427)
||+|||+.++++..+++++.. ...+++... .+..+|++.|++.|... ...+...++.++ ++|+...+......
T Consensus 68 Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 147 (417)
T 2cfq_A 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFG 147 (417)
T ss_dssp TTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSST
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHH
Confidence 499999999988877654321 123333221 24567777777666432 222333344433 34566566666666
Q ss_pred HHhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccc
Q 014265 99 TIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 99 ~iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
.+|..+++.++..+.. .+||..|++.+++.++..+..++.||+|+. +.+.+| ++
T Consensus 148 ~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------~~---------- 201 (417)
T 2cfq_A 148 CVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVAN------------AV---------- 201 (417)
T ss_dssp TTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSSS------------SS----------
T ss_pred HHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc---cccccc------------cc----------
Confidence 7777777766655443 579999998877765555444444443310 000000 00
Q ss_pred cccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 014265 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
+ +.+ ++ .....++++++.+.... .+...+.....++....+.|......
T Consensus 202 ---~--~~~----------------~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---- 250 (417)
T 2cfq_A 202 ---G--ANH----------------SA---FSLKLALELFRQPKLWF---LSLYVIGVSCTYDVFDQQFANFFTSF---- 250 (417)
T ss_dssp ---S--SCC----------------CC---CCHHHHHHHTTCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred ---c--ccc----------------cc---ccHHHHHHHhcCCchhh---HHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 0 000 00 00123334444322111 11111222222222222223221100
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHh
Q 014265 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVM 338 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (427)
.+..............+..+..+++.++.+++.||+|||+.+..+....++..+......+.+..........++..
T Consensus 251 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (417)
T 2cfq_A 251 ---FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP 327 (417)
T ss_dssp ---SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHH
T ss_pred ---HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 00000001111122234445667788899999999999998877666555444333332222221111111112222
Q ss_pred hhhHhHHHhcccccccchhhHHHHHH-HHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCcc
Q 014265 339 GAFTVSLIYAAEIYPTSVRSTGAGAA-NAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 339 ~~~~~~~~~~~ElfPt~~R~~~~g~~-~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~ 417 (427)
......+.+.+|.+|++.|+++.|+. +..+++|++++|.+.+.+.+..+....+.+.+++.+++.+..+++.||++..+
T Consensus 328 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 22345678999999999999999996 77778999999999998887655555667777777777777777778877655
Q ss_pred ccc
Q 014265 418 LSD 420 (427)
Q Consensus 418 l~e 420 (427)
+-.
T Consensus 408 ~~~ 410 (417)
T 2cfq_A 408 LLR 410 (417)
T ss_dssp SSS
T ss_pred HHH
Confidence 543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-20 Score=186.07 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=95.8
Q ss_pred hhc-cchhHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHH---HHHHHH
Q 014265 26 WQN-LVRMGFLGEALVTAGAGLLSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI---FSSFWT 99 (427)
Q Consensus 26 ~~~-GRk~~~~~~~~~~~~~~~~~~~a~-~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~ 99 (427)
||+ |||+.+.++.++..++.++.++++ |+..++++|++.|++.|.. +...+++.|++|+++|++..+. .+....
T Consensus 79 dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 158 (524)
T 2xut_A 79 DRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTIN 158 (524)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence 599 999999999999999999999999 9999999999999999886 4567888999999999877666 888889
Q ss_pred HhHhHHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHh
Q 014265 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 136 (427)
Q Consensus 100 iG~i~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~ 136 (427)
+|..+++.++..+....+||+.|++.++..++..+..
T Consensus 159 ~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 159 FGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999888887777667899999998877766544443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-10 Score=114.51 Aligned_cols=140 Identities=14% Similarity=0.021 Sum_probs=99.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh----hchhhHHHHHHHHHHHHHhhhhHhHHHhcccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 351 (427)
..+..++..++.++.|.+.||+|||+.+..+.++.++..+.... ..+.+...+..++..++..........+.+|.
T Consensus 68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 147 (451)
T 1pw4_A 68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 147 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 34455667788889999999999999998887766655555444 33333323333333333344556778999999
Q ss_pred cccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
+|++.|+++.|+.+....+|.+++|.+.+.+.+..+ -..++++.+.+.++..+...++.||++.
T Consensus 148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999999999999999988776654 3455666666666665555555566544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-09 Score=103.87 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=79.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH---HhhchhhHHHHHHHHHHHHHhhhhHhHHHhccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
.....+...++.++.|.+.||+|||+.+..+..+.++..+.. ....+.+...+..++..++..........+.+|.+
T Consensus 67 ~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~ 146 (438)
T 3o7q_A 67 QSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG 146 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc
Confidence 445556667788899999999999999988777665554444 22233232222233333344445567789999999
Q ss_pred ccchhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
|++.|+.+.|+.+....+|..++|.+.+.+.
T Consensus 147 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 147 PESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988777
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-09 Score=107.51 Aligned_cols=137 Identities=12% Similarity=-0.008 Sum_probs=95.2
Q ss_pred HHHHHhhhhhHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~-~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
.....++..++.++.|.++|| +|||+.+..+..+.++..+......+.+...+..++..++.....+....+.+|.+|+
T Consensus 60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 344556677888999999999 8999999888777665555444433333333333333344444566789999999999
Q ss_pred ch--hhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCc
Q 014265 355 SV--RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 355 ~~--R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
+. |+++.++.+....+|..++|.+.+.+.+..+-..++.+.+...+++.+...+..|+
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 88 77788888899999999999999988776654455666555555555554444333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-09 Score=103.40 Aligned_cols=142 Identities=15% Similarity=0.046 Sum_probs=97.1
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhhhHhHHHhcccccccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....+...++..+.|.+.||+|||+.+..+....++..+......+.+......++..++..........+.+|.+|++
T Consensus 41 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 120 (375)
T 2gfp_A 41 MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT 120 (375)
T ss_dssp HHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence 34455666777888999999999999888777666555544443333222222222223333334567789999999999
Q ss_pred hhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCCcc
Q 014265 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg~~ 417 (427)
.|+++.++.+....+|..++|.+.+.+.+..+....+.+.+.+.++..+...+..||++.++
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T 2gfp_A 121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD 182 (375)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence 99999999999999999999999887765544334556666666666554555667876543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-08 Score=101.53 Aligned_cols=135 Identities=16% Similarity=0.047 Sum_probs=90.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHhhhhHhHHHhccccccc
Q 014265 277 FITSLAEIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~-GRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
.+..+...++.++.|.++||+ |||+.+..+.++.++..+...... +.+......++..++..........+.+|.+|+
T Consensus 61 ~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 140 (524)
T 2xut_A 61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ 140 (524)
T ss_dssp HHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence 344556677788999999999 999998887766655554444433 333222222233333333456778999999999
Q ss_pred chhhHHHHH---HHHhhhHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccC
Q 014265 355 SVRSTGAGA---ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 411 (427)
Q Consensus 355 ~~R~~~~g~---~~~~~~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~p 411 (427)
+.|+++.+. .+....+|+.++|.+.+.+.+..+...++.+.+.+.+++.+...+..|
T Consensus 141 ~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 141 SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999876666 888889999999998887776555445566666665555555444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=9.3e-07 Score=87.90 Aligned_cols=104 Identities=17% Similarity=0.021 Sum_probs=71.0
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh------------------hchhhHHHHHHHHHHHHHhhhh
Q 014265 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT------------------YQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
.++..+|.++.|++.||+|||+.+..+.++..+..+..++ ..+.....+.=++..++..+..
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3556788899999999999999998876665544443321 0111111121222334444556
Q ss_pred HhHHHhcccccccchhhHHHHHHHHhhhHhHhhhHHHHHHHH
Q 014265 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~ 383 (427)
.....+.+|..|++.|+...++.+....+|...++.+...+.
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 778999999999999999999998888888877776655443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.8e-07 Score=90.07 Aligned_cols=117 Identities=8% Similarity=-0.040 Sum_probs=90.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHH-HHHHHHHhHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~iG~i 103 (427)
||+|||+.+..+.++.+++.+..+++++...+++..++.|++.+.. +....+..|..|++.||+..+. .+....+|..
T Consensus 284 dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~ 363 (417)
T 2cfq_A 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH
Confidence 6999999999888888888778888888888888888888886654 3456788899999999998877 4777778888
Q ss_pred HHHHHHHHhcCCCCchHHHHhhhHHHHHHHHHh-hcccCc
Q 014265 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL-GFQPES 142 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~~-~~lpES 142 (427)
+++.++..+....+|+..|.+.++..++..+.. ...||.
T Consensus 364 ~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 888777666555688888888777766654443 334443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 427 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 5e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 46.2 bits (108), Expect = 5e-06
Identities = 42/394 (10%), Positives = 102/394 (25%), Gaps = 50/394 (12%)
Query: 29 LVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL-GSGHVFLSWFLEFVPPSNR 87
+ G + A V G + + + + L L G + + R
Sbjct: 91 FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER 150
Query: 88 GMWMVIFSSFWTIGSVSEAI--GAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRY 145
G + +++ +G + + L + + L ++P+
Sbjct: 151 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS 210
Query: 146 LCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT 205
L + + + + +L ++ +
Sbjct: 211 CGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY-------------------------- 244
Query: 206 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH 265
LLW + N F Y ++ + + +
Sbjct: 245 -----------------VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS 287
Query: 266 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL 325
+L + G + + G + + + + +
Sbjct: 288 SWAYFLYEYAGIPGTL--LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 345
Query: 326 TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385
+ + G + ++A E+ P T AG G +GG V V +
Sbjct: 346 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 405
Query: 386 CH--QMTAVVLLVVVIVTSILSVMLIPFETKGQE 417
+V++ I+ IL ++++ E + E
Sbjct: 406 FFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 439
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.83 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.14 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.65 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.2e-25 Score=217.93 Aligned_cols=349 Identities=13% Similarity=0.105 Sum_probs=211.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSP----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~----~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
||+|||+++.++.++.+++.++.++++ ++.+++++|++.|++.|.. +....++.|+.|+++|+++.++.+.++.+
T Consensus 84 Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 163 (447)
T d1pw4a_ 84 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 163 (447)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred HHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccch
Confidence 599999999999999999999888774 6789999999999999876 45677889999999999999999999999
Q ss_pred hHhHHHHHHHHh-cCCCCchHHHHhhhHHHHHHHH-HhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCcccccc
Q 014265 101 GSVSEAIGAWII-MPRLDWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 101 G~i~~~~~~~~~-~~~~~WR~~~~~~~i~~li~~~-~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
|.++++.++... ....+||+.+++.+++.++..+ .+..++|.|+........++
T Consensus 164 g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 219 (447)
T d1pw4a_ 164 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY------------------------ 219 (447)
T ss_dssp HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT------------------------
T ss_pred hhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh------------------------
Confidence 998887765543 3346899998888777665544 44566777753211100000
Q ss_pred cccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 014265 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
+++. .+ ...+ . .+++........+..++.+ ..+......+......++...+.+......
T Consensus 220 -----~~~~--~~---~~~~--~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 279 (447)
T d1pw4a_ 220 -----KNDY--PD---DYNE--K-AEQELTAKQIFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEV---- 279 (447)
T ss_dssp -----CCC---------------------CCTHHHHHHTSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----
T ss_pred -----hhhc--cc---chhh--c-cccccchhhHHHHHHHcCc---hHHHHHHHhhhhhhhhhcchhhhhhhcccc----
Confidence 0000 00 0000 0 0000000011222233221 222222233334444455555555433111
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH-HHh--h--chhhHHHHHHHHH
Q 014265 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LVT--Y--QSNILTTGLLFGA 333 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~-~~~--~--~~~~~~~~~~~~~ 333 (427)
.+.+.........+..+..+++.++++++.||.+||...........+.... ... . .+.+......+..
T Consensus 280 ------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (447)
T d1pw4a_ 280 ------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 353 (447)
T ss_dssp ------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred ------cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 1112222233345556677888999999999999876543332222222111 111 1 1222222333333
Q ss_pred HHHHhhhhHhHHHhcccccccchhhHHHHHHHHhhhHh-HhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCc
Q 014265 334 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIG-GMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 334 ~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~-~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
.++..+.....+.+..|.+|++.|+++.|+.+.+++++ .+++|.+.+++.+..+....+.+++++.+++.++.+++.++
T Consensus 354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556678899999999999999999999999985 56678998888887765566666666666666555555433
Q ss_pred cCCcccccccccc
Q 014265 413 TKGQELSDTVDFT 425 (427)
Q Consensus 413 tkg~~l~e~~~~~ 425 (427)
. .|..+|..+|.
T Consensus 434 ~-~~r~~~~~~e~ 445 (447)
T d1pw4a_ 434 E-KRRHEQLLQEL 445 (447)
T ss_dssp H-HHHHHGGGGGS
T ss_pred c-cccHHHHHHhC
Confidence 3 33444544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.5e-19 Score=172.72 Aligned_cols=336 Identities=10% Similarity=-0.051 Sum_probs=187.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHH----HHHHhhhccccch-hhhhhhhhccCC--CCchhHHHHHHHHH
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLIT----LRCLVGVGLGSGH-VFLSWFLEFVPP--SNRGMWMVIFSSFW 98 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v----~R~l~Gi~~G~~~-~~~~~~~E~~p~--~~Rg~~~~~~~~~~ 98 (427)
||+|||+.++++.....++..+..+.++...... .+++.|.+.+... .......+..++ ++|....+......
T Consensus 68 Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (417)
T d1pv7a_ 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFG 147 (417)
T ss_dssp HHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhh
Confidence 4999999999999999999988888877766544 4444444444332 222222222222 22333445555666
Q ss_pred HHhHhHHHHHHHHhcCCCCchHHHH-hhhHHHHHHHHHhhcccCchhHHhhcCchHHHHHHHHHHhhhcCCCCCCccccc
Q 014265 99 TIGSVSEAIGAWIIMPRLDWRWLLG-LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVA 177 (427)
Q Consensus 99 ~iG~i~~~~~~~~~~~~~~WR~~~~-~~~i~~li~~~~~~~lpESP~~L~~~gr~~ea~~~l~~~~~~~~~~~~~~~~~~ 177 (427)
..|..+++.++..+.. .+|+..+. ......++..+..+..||+|+....+ ++.+ .++
T Consensus 148 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~~-------- 205 (417)
T d1pv7a_ 148 CVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA---NAVG----------ANH-------- 205 (417)
T ss_dssp HHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS---HHHH----------SCC--------
T ss_pred cccccccccccccccc-ccccccccchhhHHHHHHHHHHHHhcccccchhhh---hhhh----------hhc--------
Confidence 6666666666555433 34555544 44444444555566778887642111 1100 000
Q ss_pred ccccCCCCCCCCccchhhcccCCCCCccCCCchhhHHHHhcCcchhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccc
Q 014265 178 RRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTIL-LWLLLFGNSFAYYAVVLLISELSSLDTR 256 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~l~~~~~~ 256 (427)
+ +. ...........+..+.... .................+......
T Consensus 206 -------~-------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 252 (417)
T d1pv7a_ 206 -------S-------------------AF---SLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA---- 252 (417)
T ss_dssp -------C-------------------CC---CHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS----
T ss_pred -------c-------------------cc---cccccccccccccccchhhhhHHHHHHHHhhhcccccccccccc----
Confidence 0 00 0011111222222122111 111111111111111111111100
Q ss_pred CCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 014265 257 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 336 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (427)
.................+...++..+.+.+.||.|||+.+..+....++..+......+.+.......+..++
T Consensus 253 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 325 (417)
T d1pv7a_ 253 -------TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE 325 (417)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred -------ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHH
Confidence 0000001111223344455666777888999999999999887777666655555444444333333333344
Q ss_pred HhhhhHhHHHhcccccccchhhHHHHHHHHhh-hHhHhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 014265 337 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 337 ~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~-~~~~~i~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtkg 415 (427)
....+...+.+..|.+|++.|+++.|+...+. .+|+.++|.+.+++.+..+....+++++++.+++.++..++.++++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 44456778899999999999999999876654 58999999999999888776677888888887777777777767766
Q ss_pred cccccccc
Q 014265 416 QELSDTVD 423 (427)
Q Consensus 416 ~~l~e~~~ 423 (427)
.++++.+.
T Consensus 406 ~~~~r~~~ 413 (417)
T d1pv7a_ 406 LSLLRRQV 413 (417)
T ss_dssp TTHHHHHH
T ss_pred cchhHhhh
Confidence 66655443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1e-09 Score=105.22 Aligned_cols=138 Identities=14% Similarity=0.036 Sum_probs=91.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh----chhhHHHHHHHHHHHHHhhhhHhHHHhcccc
Q 014265 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY----QSNILTTGLLFGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 351 (427)
.....++..++.++.|.++||+|||+.+..+.++.++..+..... .+.....+.-++..++....+.....+.+|.
T Consensus 65 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 144 (447)
T d1pw4a_ 65 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 144 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 334456677888999999999999999988777665554433321 1222222222333333344556778899999
Q ss_pred cccchhhHHHHHHHHhhhHhHhhhHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHhhccCcc
Q 014265 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ-MTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~i~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+|++.|+++.|+.+....+|+.++|.+...+....+. ...+++.+.+.++..+..+++++|+
T Consensus 145 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 145 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence 9999999999999999999999999887766655432 2334555555555555555554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=1.4e-08 Score=95.01 Aligned_cols=110 Identities=7% Similarity=-0.033 Sum_probs=93.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCCchhHHHHH-HHHHHHhHh
Q 014265 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIF-SSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~~~~~~~~~~~~~~~~~~a~~~~~l~v~R~l~Gi~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~-~~~~~iG~i 103 (427)
||+|||+.+.++.++..++.+...+.+|...+++.-++.|++.|.. +....++.|..|++.||+..+.. +....+|..
T Consensus 284 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 363 (417)
T d1pv7a_ 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH
T ss_pred cccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999876 45677889999999999998874 556778888
Q ss_pred HHHHHHHHhcCCCCchHHHHhhhHHHHHHHHH
Q 014265 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 135 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~li~~~~ 135 (427)
+++.++..+.+..||+..+++.++..++..+.
T Consensus 364 i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 395 (417)
T d1pv7a_ 364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 88888777777789999988877666554443
|