Citrus Sinensis ID: 014292

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
cEEEEEEEEccccEEEEEccccccccccHHHHHHHHHHccccccccccEEEcccEEEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEcccccccEEEEEcccccEEEEEEEEEEEEEEEccccccEEEEEcccccEEEEEEcccccccccccccEEEEEcccccEEEEEEEEEccccccEEEEEEEEEcccEEEEEEEEEEEccccccccEEEEEEEccccccccEEEEcEEEEEEEEccEEEEEEccccccccccEEEEEEEccccccccccccEEEEEEEccEEcccEEEEEEEEEcccccccccEEEEEEcccEEEcc
cccEEEEEcccccEEEEEccccccccHHHHHHHHHHHHHcccccccccEEEcccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHEHHHHHHHHHHHcccccccHHHHHHHHccccccHEEEEEccccccccccccccccHcccccccccccEEcccEEEEEHHHHEEEEEcccccEEEEEEEEcccEEEEEEEEEEEEEEEEEccccccEEcccccEEEccccccccEEccccccccEEEEccccccEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEcccccccccEEEEEEEcccccccccEEEcEEEEEEccccEEEEEEEEcccccEEEEEEEEEcccccccccccccEEEEEEEEEEEEccEEEEEEEEEcccccccccEEEEEccccEEEEc
MLQCIFLLADNGAVILEKqltghrvdrsiCDWFWdhvisqgdsfksmpviasptHYIFQIVRAGITFLactqvempplmgIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMidngfplttepnilremiappniVSKMLSVVtgnssnvsdilpgatascvpwrptdvkyanneVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNcllsglpdltlsfanpsilhdvrfhpcvrfrpweshqilsfvppdgqfKLMSYRVKklkstpiyvkpqltsdagtcrISVMVGirndpgktiDSIILQfqlppcilsadltsnhgtvnvlsnkictwsigripkdkapslsgtmVLETGLetlrvfptFQVEFRIMGVAlsglqidkldlqnvpnrlYKGFRAvtrageyevrs
MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLkstpiyvkpqltsdagtcrISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKgfravtrageyevrs
MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
**QCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRA*******
MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQ***FKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSV***************************KYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMV************TFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVT*********LP*******PWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query427 2.2.26 [Sep-21-2011]
Q5R478418 AP-3 complex subunit mu-1 yes no 0.967 0.988 0.428 5e-99
Q9Y2T2418 AP-3 complex subunit mu-1 yes no 0.967 0.988 0.428 5e-99
Q24K11418 AP-3 complex subunit mu-1 yes no 0.967 0.988 0.428 2e-98
Q9JKC8418 AP-3 complex subunit mu-1 yes no 0.967 0.988 0.425 3e-98
Q5ZMP7418 AP-3 complex subunit mu-1 yes no 0.967 0.988 0.416 3e-98
P53676418 AP-3 complex subunit mu-1 yes no 0.967 0.988 0.421 4e-97
P47795418 AP-1 complex subunit mu O N/A no 0.967 0.988 0.430 9e-97
P53678418 AP-3 complex subunit mu-2 no no 0.967 0.988 0.435 5e-94
Q8R2R9418 AP-3 complex subunit mu-2 no no 0.967 0.988 0.430 8e-94
P53677418 AP-3 complex subunit mu-2 no no 0.967 0.988 0.425 1e-93
>sp|Q5R478|AP3M1_PONAB AP-3 complex subunit mu-1 OS=Pongo abelii GN=AP3M1 PE=2 SV=1 Back     alignment and function desciption
 Score =  361 bits (927), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 185/432 (42%), Positives = 271/432 (62%), Gaps = 19/432 (4%)

Query: 1   MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQI 60
           M+  +FL+  +G + LEK      V +S+CD+F++      D     PVI++P HY+  I
Sbjct: 1   MIHSLFLINCSGDIFLEKHWKS-VVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISI 59

Query: 61  VRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDN 120
            R  + F++  Q E+PPL  IEFL RVAD   DY GE +E  IKDN VIVYELL+EM+DN
Sbjct: 60  YRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDN 119

Query: 121 GFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNE 180
           GFPL TE NIL+E+I PP I+  +++ +TG SSNV D LP    S +PWR   VKY NNE
Sbjct: 120 GFPLATESNILKELIKPPTILRSVVNSITG-SSNVGDTLPTGQLSNIPWRRAGVKYTNNE 178

Query: 181 VYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS 240
            Y D+VEE+DAII+            + G  V  EI G +     LSG+PDL+LSF NP 
Sbjct: 179 AYFDVVEEIDAIID------------KSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPR 226

Query: 241 ILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRV--KKLKSTPIYVKPQLT-SDAG 297
           +L DV FHPC+RF+ WES ++LSF+PPDG F+L+SYRV  + L + P+YVK  ++  +  
Sbjct: 227 LLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENS 286

Query: 298 TC-RISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRI 355
           +C R  + +G + + GKTI+ I +   +P  +L+ +LT   G+       K+ TW +G+I
Sbjct: 287 SCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKI 346

Query: 356 PKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFR 415
              K PSL G + L++G       P+  ++F+I  +A+SGL++++LD+     + +KG +
Sbjct: 347 TPQKLPSLKGLVNLQSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVK 406

Query: 416 AVTRAGEYEVRS 427
            VT+AG+++VR+
Sbjct: 407 YVTKAGKFQVRT 418
Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.
Pongo abelii (taxid: 9601)
>sp|Q9Y2T2|AP3M1_HUMAN AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1 PE=1 SV=1 Back     alignment and function description
>sp|Q24K11|AP3M1_BOVIN AP-3 complex subunit mu-1 OS=Bos taurus GN=AP3M1 PE=2 SV=1 Back     alignment and function description
>sp|Q9JKC8|AP3M1_MOUSE AP-3 complex subunit mu-1 OS=Mus musculus GN=Ap3m1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZMP7|AP3M1_CHICK AP-3 complex subunit mu-1 OS=Gallus gallus GN=AP3M1 PE=2 SV=1 Back     alignment and function description
>sp|P53676|AP3M1_RAT AP-3 complex subunit mu-1 OS=Rattus norvegicus GN=Ap3m1 PE=2 SV=1 Back     alignment and function description
>sp|P47795|AP1M_DIPOM AP-1 complex subunit mu OS=Diplobatis ommata PE=2 SV=1 Back     alignment and function description
>sp|P53678|AP3M2_RAT AP-3 complex subunit mu-2 OS=Rattus norvegicus GN=Ap3m2 PE=2 SV=1 Back     alignment and function description
>sp|Q8R2R9|AP3M2_MOUSE AP-3 complex subunit mu-2 OS=Mus musculus GN=Ap3m2 PE=2 SV=1 Back     alignment and function description
>sp|P53677|AP3M2_HUMAN AP-3 complex subunit mu-2 OS=Homo sapiens GN=AP3M2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query427
255542950415 clathrin coat adaptor ap3 medium chain, 0.971 1.0 0.843 0.0
288551435415 clathrin-associated adaptor complexes me 0.971 1.0 0.838 0.0
225450531415 PREDICTED: AP-3 complex subunit mu-1 [Vi 0.971 1.0 0.822 0.0
224124446415 predicted protein [Populus trichocarpa] 0.971 1.0 0.822 0.0
224122880415 predicted protein [Populus trichocarpa] 0.971 1.0 0.819 0.0
356505759415 PREDICTED: AP-3 complex subunit mu-1-lik 0.971 1.0 0.814 0.0
363808242415 uncharacterized protein LOC100799191 [Gl 0.971 1.0 0.810 0.0
449443514415 PREDICTED: AP-3 complex subunit mu-1-lik 0.971 1.0 0.798 0.0
356535002415 PREDICTED: AP-3 complex subunit mu-1-lik 0.971 1.0 0.803 0.0
449520597415 PREDICTED: AP-3 complex subunit mu-1-lik 0.971 1.0 0.796 0.0
>gi|255542950|ref|XP_002512538.1| clathrin coat adaptor ap3 medium chain, putative [Ricinus communis] gi|223548499|gb|EEF49990.1| clathrin coat adaptor ap3 medium chain, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/427 (84%), Positives = 380/427 (88%), Gaps = 12/427 (2%)

Query: 1   MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQI 60
           MLQCIFLL+D G VILEKQLTGHRVDRSICDWFW+  ISQ DSFK   VIASPTHY+FQI
Sbjct: 1   MLQCIFLLSDCGEVILEKQLTGHRVDRSICDWFWNQAISQDDSFKQQSVIASPTHYLFQI 60

Query: 61  VRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDN 120
           VR GITFLACTQVEMPPLM IEFLCRVA+ILSDYL  LNEDLIKDNFVIVYELLDEMIDN
Sbjct: 61  VREGITFLACTQVEMPPLMAIEFLCRVANILSDYLEGLNEDLIKDNFVIVYELLDEMIDN 120

Query: 121 GFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNE 180
           GFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSD LP AT+SCVPWR TDVKYANNE
Sbjct: 121 GFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDTLPNATSSCVPWRTTDVKYANNE 180

Query: 181 VYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS 240
           VYVDLVEEMDAIIN            RDGVL+KCEIYGE+QVN  ++G+PDLTLSF NPS
Sbjct: 181 VYVDLVEEMDAIIN------------RDGVLMKCEIYGELQVNSHITGVPDLTLSFTNPS 228

Query: 241 ILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCR 300
           IL DVRFHPCVRFRPWESHQILSFVPPDG FKLMSYRVKKLK+ PIYVKPQLTSDAGTCR
Sbjct: 229 ILDDVRFHPCVRFRPWESHQILSFVPPDGLFKLMSYRVKKLKTVPIYVKPQLTSDAGTCR 288

Query: 301 ISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKA 360
           I++MVGI+NDPGK IDSI +QF LPPCILSADLTSNHG VNVLSNK+C WSI RIPKDK 
Sbjct: 289 INLMVGIKNDPGKMIDSINVQFHLPPCILSADLTSNHGVVNVLSNKMCVWSIDRIPKDKT 348

Query: 361 PSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRA 420
           PSLSGT+VLETGLE L VFP FQ+ FRI GVALSGLQIDKLDL+ VPNRLYKGFRA+TRA
Sbjct: 349 PSLSGTLVLETGLERLHVFPIFQLSFRIQGVALSGLQIDKLDLKVVPNRLYKGFRALTRA 408

Query: 421 GEYEVRS 427
           G YEVRS
Sbjct: 409 GLYEVRS 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|288551435|gb|ADC53238.1| clathrin-associated adaptor complexes medium subunit [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|225450531|ref|XP_002281428.1| PREDICTED: AP-3 complex subunit mu-1 [Vitis vinifera] gi|296089804|emb|CBI39623.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224124446|ref|XP_002330025.1| predicted protein [Populus trichocarpa] gi|222871450|gb|EEF08581.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122880|ref|XP_002318939.1| predicted protein [Populus trichocarpa] gi|222857315|gb|EEE94862.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356505759|ref|XP_003521657.1| PREDICTED: AP-3 complex subunit mu-1-like [Glycine max] Back     alignment and taxonomy information
>gi|363808242|ref|NP_001242747.1| uncharacterized protein LOC100799191 [Glycine max] gi|255641304|gb|ACU20929.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449443514|ref|XP_004139522.1| PREDICTED: AP-3 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356535002|ref|XP_003536038.1| PREDICTED: AP-3 complex subunit mu-1-like [Glycine max] Back     alignment and taxonomy information
>gi|449520597|ref|XP_004167320.1| PREDICTED: AP-3 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query427
TAIR|locus:2027564415 ZIP4 "AT1G56590" [Arabidopsis 0.969 0.997 0.786 1.7e-185
UNIPROTKB|F2Z4I2418 AP3M1 "AP-3 complex subunit mu 0.967 0.988 0.428 4.5e-91
UNIPROTKB|Q9Y2T2418 AP3M1 "AP-3 complex subunit mu 0.967 0.988 0.428 4.5e-91
UNIPROTKB|Q5R478418 AP3M1 "AP-3 complex subunit mu 0.967 0.988 0.428 4.5e-91
RGD|70969418 Ap3m2 "adaptor-related protein 0.967 0.988 0.435 4.5e-91
UNIPROTKB|E1C4U4418 AP3M2 "Uncharacterized protein 0.964 0.985 0.424 5.7e-91
UNIPROTKB|F1SU34418 AP3M1 "Uncharacterized protein 0.967 0.988 0.428 5.7e-91
MGI|MGI:1929214418 Ap3m2 "adaptor-related protein 0.967 0.988 0.432 5.7e-91
UNIPROTKB|Q24K11418 AP3M1 "AP-3 complex subunit mu 0.967 0.988 0.428 1.2e-90
UNIPROTKB|P53677418 AP3M2 "AP-3 complex subunit mu 0.967 0.988 0.428 1.2e-90
TAIR|locus:2027564 ZIP4 "AT1G56590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1799 (638.3 bits), Expect = 1.7e-185, P = 1.7e-185
 Identities = 335/426 (78%), Positives = 380/426 (89%)

Query:     1 MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQI 60
             MLQCIFL++D+G V+LEKQLTGHRVDRSIC WFWD  ISQGDSFK++PVIASPTHY+FQI
Sbjct:     1 MLQCIFLISDSGEVMLEKQLTGHRVDRSICAWFWDQYISQGDSFKALPVIASPTHYLFQI 60

Query:    61 VRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDN 120
             VR GITFLAC+QVEMPPLM IEFLCRVAD+LS+YLG LNEDLIKDNF+IVYELLDEMIDN
Sbjct:    61 VRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLDEMIDN 120

Query:   121 GFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNE 180
             GFPLTTEP+IL+EMIAPPN+VSKMLSVVTGN+SNVSD LP    SCVPWRPTD KY++NE
Sbjct:   121 GFPLTTEPSILKEMIAPPNLVSKMLSVVTGNASNVSDTLPSGAGSCVPWRPTDPKYSSNE 180

Query:   181 VYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS 240
             VYVDLVEEMDAI+N            RDG LVKCEIYGEVQ+N  L+G PDLTLSFANPS
Sbjct:   181 VYVDLVEEMDAIVN------------RDGELVKCEIYGEVQMNSQLTGFPDLTLSFANPS 228

Query:   241 ILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCR 300
             IL D+RFHPCVR+RPWESHQ+LSFVPPDG+FKLMSYRVKKLK+TP+YVKPQ+TSD+GTCR
Sbjct:   229 ILEDMRFHPCVRYRPWESHQVLSFVPPDGEFKLMSYRVKKLKNTPVYVKPQITSDSGTCR 288

Query:   301 ISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKA 360
             ISV+VGIR+DPGKTI+SI L FQLP C+ SADL+SNHGTV +LSNK CTW+IGRIPKDK 
Sbjct:   289 ISVLVGIRSDPGKTIESITLSFQLPHCVSSADLSSNHGTVTILSNKTCTWTIGRIPKDKT 348

Query:   361 PSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRA 420
             P LSGT+ LE GLE L VFPTF++ F+IMG+ALSGL+I+KLDLQ +P RLYKGFRA TRA
Sbjct:   349 PCLSGTLALEPGLERLHVFPTFKLGFKIMGIALSGLRIEKLDLQTIPPRLYKGFRAQTRA 408

Query:   421 GEYEVR 426
             GE++VR
Sbjct:   409 GEFDVR 414
GO:0005622 "intracellular" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030125 "clathrin vesicle coat" evidence=ISS
GO:0006623 "protein targeting to vacuole" evidence=IGI
GO:0009630 "gravitropism" evidence=IMP
GO:0030244 "cellulose biosynthetic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
UNIPROTKB|F2Z4I2 AP3M1 "AP-3 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2T2 AP3M1 "AP-3 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R478 AP3M1 "AP-3 complex subunit mu-1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
RGD|70969 Ap3m2 "adaptor-related protein complex 3, mu 2 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4U4 AP3M2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SU34 AP3M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1929214 Ap3m2 "adaptor-related protein complex 3, mu 2 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q24K11 AP3M1 "AP-3 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P53677 AP3M2 "AP-3 complex subunit mu-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q24K11AP3M1_BOVINNo assigned EC number0.42820.96720.9880yesno
Q5R478AP3M1_PONABNo assigned EC number0.42820.96720.9880yesno
Q9JKC8AP3M1_MOUSENo assigned EC number0.42590.96720.9880yesno
Q9Y2T2AP3M1_HUMANNo assigned EC number0.42820.96720.9880yesno
P53676AP3M1_RATNo assigned EC number0.42120.96720.9880yesno
Q9GPF1AP3M_DICDINo assigned EC number0.41510.96480.9786yesno
Q5ZMP7AP3M1_CHICKNo assigned EC number0.41660.96720.9880yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00022573001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (415 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 1e-108
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 6e-70
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 2e-65
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 7e-60
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 9e-42
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 3e-33
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 4e-28
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 2e-27
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 5e-27
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 1e-22
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 7e-16
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 6e-09
cd09257246 cd09257, AP_muniscins_like_MHD, Mu-homology domain 1e-04
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 0.002
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information 
 Score =  317 bits (816), Expect = e-108
 Identities = 116/260 (44%), Positives = 162/260 (62%), Gaps = 15/260 (5%)

Query: 167 VPWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLL 226
           VPWR   VKY NNE+YVD+VEE+DAI++            + G  V  E+ G +  N  L
Sbjct: 1   VPWRRAGVKYTNNEIYVDVVEEIDAIVD------------KSGKPVSGEVSGSIDCNSRL 48

Query: 227 SGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVK--KLKST 284
           SG+PDLTLS  NP +L D  FHPCVR   WES ++LSF+PPDG+F LMSYRV    L   
Sbjct: 49  SGMPDLTLSLNNPGLLDDPSFHPCVRLSRWESDRVLSFIPPDGKFTLMSYRVDLNSLVQL 108

Query: 285 PIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVL- 343
           P+YVKPQ++   G  R  + VG R + GKTI++++++  LP  + S  LT++HGT +   
Sbjct: 109 PVYVKPQISLGKGGGRFEISVGPRGNLGKTIENVVVEIPLPKGVKSLRLTASHGTFSFDS 168

Query: 344 SNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDL 403
           S K   WSIG++   K P+L G++ LE+G E     P+  V F+I G   SGL++D LD+
Sbjct: 169 STKTLVWSIGKLTPGKTPTLRGSISLESGEEAPSEPPSISVSFKIPGYLPSGLKVDSLDI 228

Query: 404 QNVPNRLYKGFRAVTRAGEY 423
            N   + +KG + +T+AG+Y
Sbjct: 229 YNEKYKPFKGVKYITKAGKY 248

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric adaptor protein complex 3 (AP-3) medium mu3 subunit, which includes two closely related homologs, mu3A (P47A, encoded by ap3m1) and mu1B (P47B, encoded by ap3m2). Mu3A is ubiquitously expressed, but mu3B is specifically expressed in neurons and neuroendocrine cells. AP-3 is particularly important for targeting integral membrane proteins to lysosomes and lysome-related organelles at trans-Golgi network (TGN) and/or endosomes, such as the yeast vacuole, fly pigment granules and mammalian melanosomes, platelet dense bodies and the secretory lysosomes of cytotoxic T lymphocytes. Unlike AP-1 and AP-2, which function in conjunction with clathrin which is a scaffolding protein participating in the formation of coated vesicles, the nature of the outer shell of AP-3 containing coats remains to be elucidated. Membrane-anchored cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-3 mu3 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 248
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211368 cd09257, AP_muniscins_like_MHD, Mu-homology domain (MHD) of muniscins adaptor proteins (AP) and similar proteins Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 427
KOG0938446 consensus Adaptor complexes medium subunit family 100.0
KOG2740418 consensus Clathrin-associated protein medium chain 100.0
KOG0937424 consensus Adaptor complexes medium subunit family 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2635512 consensus Medium subunit of clathrin adaptor compl 100.0
KOG2677922 consensus Stoned B synaptic vesicle biogenesis pro 99.97
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.94
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 99.85
KOG3343175 consensus Vesicle coat complex COPI, zeta subunit 99.78
KOG0935143 consensus Clathrin adaptor complex, small subunit 99.77
KOG0934145 consensus Clathrin adaptor complex, small subunit 99.77
KOG0936182 consensus Clathrin adaptor complex, small subunit 99.74
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 99.44
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.23
PF15001189 AP-5_subunit_s1: AP-5 complex subunit sigma-1 96.38
PF03164415 Mon1: Trafficking protein Mon1; InterPro: IPR00435 94.02
KOG0997523 consensus Uncharacterized conserved protein Sand [ 91.02
PF1377483 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3 90.22
PF08923119 MAPKK1_Int: Mitogen-activated protein kinase kinas 89.91
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 87.29
COG5122134 TRS23 Transport protein particle (TRAPP) complex s 87.25
PF04099142 Sybindin: Sybindin-like family ; InterPro: IPR0072 86.27
KOG0781 587 consensus Signal recognition particle receptor, al 82.3
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-96  Score=688.04  Aligned_cols=409  Identities=29%  Similarity=0.527  Sum_probs=372.5

Q ss_pred             CeEEEEEEcCCCCEEEEEccCCCCCCcchHHHHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCCEEEEEEecCCCChhHH
Q 014292            1 MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMG   80 (427)
Q Consensus         1 MI~~i~Ild~~G~~l~~r~y~~~~~~~~~~~~f~~~~~~~~~~~~~~pii~~~~~~~~~~~~~~L~fv~~~~~~~n~l~~   80 (427)
                      ||+++||+|.+|++++.|.||+ ++.++..|.|+.++++..  +..+|+...++..++|.+.++||+++++..|.|.+++
T Consensus         1 misglfi~n~rGevlink~fr~-dlkrs~~diFRv~vi~n~--d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v   77 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRD-DLKRSIVDIFRVQVINNL--DVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAV   77 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhh-hhhhhHHHHHHHhhhhcc--ccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhH
Confidence            9999999999999999999999 999999999999999863  4678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCHHHHHhhHHHHHHHHHHHHhCCcccccChhhHhhccCCCccccccc--ccccCCCCCccCC
Q 014292           81 IEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKML--SVVTGNSSNVSDI  158 (427)
Q Consensus        81 ~~~L~~~~~~l~~y~~~l~e~~i~~N~~~v~~lldEiid~G~p~~t~~~~l~~~i~~~~~~~k~~--~~~~g~~~~~~~~  158 (427)
                      ++||..+.+++..|||+++|+.|++||.+|||+||||+|+|+||+|++++|+..+..++.-++.-  +......++....
T Consensus        78 ~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~  157 (446)
T KOG0938|consen   78 FEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQATEL  157 (446)
T ss_pred             HHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999987644311  1101111122212


Q ss_pred             CCCCCCcCCcccCCCCCcccceEEEEEEEeEeEEEecccccccccccCCCCcEEEEEEEEEEEEEEeecCCCeEEEEecC
Q 014292          159 LPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFAN  238 (427)
Q Consensus       159 ~~~~~~~~~~WR~~~~~~~~nei~vdv~E~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~G~i~~~s~LsG~P~~~l~ln~  238 (427)
                      ..+..+..++||+.|++|++||+|+||.|++|.+++            ++|++++++|+|.|.|+|+|||||+|+++|||
T Consensus       158 ~ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS------------~~GnVLrs~VsG~V~mk~~LSGmPeckfGlND  225 (446)
T KOG0938|consen  158 RSSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMS------------SDGNVLRSDVSGTVDMKTHLSGMPECKFGLND  225 (446)
T ss_pred             cccccccccccccccceeccceeEeEehheeeeEEc------------CCCCEEEeecccEEEEEEeccCCcccccccCc
Confidence            224557789999999999999999999999999999            99999999999999999999999999999998


Q ss_pred             CC---------------------------ccccceecceeecCCcCCCceEEEeCCCCeEEEEEEEecCCCCCCEEEEEE
Q 014292          239 PS---------------------------ILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQ  291 (427)
Q Consensus       239 ~~---------------------------~l~~~~fH~cV~~~~~~~~~~l~F~PPdG~f~L~~Y~~~~~~~~P~~v~~~  291 (427)
                      ..                           .|+||+||+||++++|++++.|+|+||||+|+||+||+..+.++||+|.|.
T Consensus       226 kl~~e~kq~esks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~enInlPFrV~Pi  305 (446)
T KOG0938|consen  226 KLGMESKQSESKSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTENINLPFRVTPI  305 (446)
T ss_pred             ccceeeccccccccccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccCcccceEeeeh
Confidence            73                           299999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCccEEEEEEEeecCCC--CceeeEEEEEeCCCCceeeEEEeccccceeEeC--cEEEEEeCCcCCCCceEEEEEE
Q 014292          292 LTSDAGTCRISVMVGIRNDPG--KTIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTM  367 (427)
Q Consensus       292 ~~~~~~~~~~ei~l~~~~~~~--~~~~~v~i~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~i  367 (427)
                      ++. .+..++++++.+++.++  ..+.+|.++||+|+++..+.++++.|++ +|.+  ++++|+|++++|.+|.+++|++
T Consensus       306 V~e-l~r~kie~ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gka-ky~psen~ivWki~kf~G~tE~tlsAev  383 (446)
T KOG0938|consen  306 VTE-LGRTKIEYRITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGKA-KYVPSENAIVWKINKFNGLTESTLSAEV  383 (446)
T ss_pred             eec-ccceeEEEEEEEeccCCchhhhcceEEEecCCCccccceeEEecCcc-ccCcccceEEEEecccCCcccceeEEEE
Confidence            984 46799999999999874  3889999999999999999999999999 9999  9999999999999999999999


Q ss_pred             EeecCC--CCCCCCCcEEEEEEECceeccccEEeEEEee--cCCCccccceEEEEecccEEEc
Q 014292          368 VLETGL--ETLRVFPTFQVEFRIMGVALSGLQIDKLDLQ--NVPNRLYKGFRAVTRAGEYEVR  426 (427)
Q Consensus       368 ~~~~~~--~~~~~~~~i~v~F~~~~~~~SGl~V~~l~v~--~~~~~~~k~vry~t~sg~y~iR  426 (427)
                      ++.+..  ...|..|||+++|++||++.|||.|++++|.  +++|+..|||||+|+||+||+|
T Consensus       384 els~Tt~nkq~WtrPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vkWVrYitkaGsyEiR  446 (446)
T KOG0938|consen  384 ELSDTTQNKQQWTRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVKWVRYITKAGSYEIR  446 (446)
T ss_pred             EeccCccccccccCCCceeEEeeeeecCCceEEEEEEEecccCCCceEEEEEEecccceeeeC
Confidence            996543  3458899999999999999999999999994  4689999999999999999998

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1 Back     alignment and domain information
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain Back     alignment and domain information
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown] Back     alignment and domain information
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D Back     alignment and domain information
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses Back     alignment and domain information
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 1e-54
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 1e-39
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-35
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 5e-34
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-21
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 3e-19
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 3e-16
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 9e-16
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 1e-15
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-15
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 4e-14
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 1e-12
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 1e-09
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/266 (39%), Positives = 163/266 (61%), Gaps = 17/266 (6%)
Query: 167 VPWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLL 226
           +PWR   VKY NNE Y D+VEE+DAII+            + G  V  EI G +     L
Sbjct: 8   IPWRRAGVKYTNNEAYFDVVEEIDAIID------------KSGSTVFAEIQGVIDACIKL 55
Query: 227 SGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRV--KKLKST 284
           SG+PDL+LSF NP +L DV FHPC+RF+ WES ++LSF+PPDG F+L+SYRV  + L + 
Sbjct: 56  SGMPDLSLSFMNPRLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAI 115
Query: 285 PIYVKPQLT-SDAGTC-RISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNV 342
           P+YVK  ++  +  +C R  + +G + + GKTI+ I +   +P  +L+ +LT   G+   
Sbjct: 116 PVYVKHNISFKENSSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTF 175
Query: 343 LS-NKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKL 401
               K+  W +G+I   K PSL G + L++G       P   ++F+I  +A+SGL++++L
Sbjct: 176 DPVTKVLAWDVGKITPQKLPSLKGLVNLQSGAPKPEENPNLNIQFKIQQLAISGLKVNRL 235
Query: 402 DLQNVPNRLYKGFRAVTRAGEYEVRS 427
           D+     + +KG + +T+AG+++VR+
Sbjct: 236 DMYGEKYKPFKGVKYITKAGKFQVRT 261
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 4e-86
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 4e-82
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 2e-64
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 4e-64
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 3e-58
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 6e-56
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 1e-20
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 2e-20
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
 Score =  268 bits (686), Expect = 4e-86
 Identities = 107/454 (23%), Positives = 189/454 (41%), Gaps = 48/454 (10%)

Query: 1   MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQI 60
           M+  +F+    G V++ +      + R+  D F  +VI      +S PV        F +
Sbjct: 1   MIGGLFIYNHKGEVLISRVYRDD-IGRNAVDAFRVNVIHARQQVRS-PVTNIARTSFFHV 58

Query: 61  VRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDN 120
            R+ I   A T+  +   M  EFL ++ D+++ Y G+++E+ IK+NFV++YELLDE++D 
Sbjct: 59  KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 118

Query: 121 GFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNE 180
           G+P  +E   L+  I    I S+  +    +               + WR   +KY  NE
Sbjct: 119 GYPQNSETGALKTFITQQGIKSQHQTKEEQSQITS------QVTGQIGWRREGIKYRRNE 172

Query: 181 VYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANP- 239
           +++D++E ++ +++              G ++   + G V +   LSG+P+      +  
Sbjct: 173 LFLDVLESVNLLMSP------------QGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKI 220

Query: 240 --------------------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVK 279
                                 + D  FH CVR   ++S + +SF+PPDG+F+LM YR  
Sbjct: 221 VIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTT 280

Query: 280 KLKSTPIYVKPQLTSDAGT-CRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHG 338
           K    P  V P +     T   + V++     P      I ++   P       +    G
Sbjct: 281 KDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKG 340

Query: 339 TVN-VLSNKICTWSIGRIPKDKAPSLSGTMVLETG-----LETLRVFPTFQVEFRIMGVA 392
                 S     W I R+   K   +S  + L             +   F+V F   G+ 
Sbjct: 341 KAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLK 400

Query: 393 LSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVR 426
           +  L++ +  L    + + K  R + R+G YE R
Sbjct: 401 VRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 434
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query427
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.97
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.96
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.96
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 99.05
4b93_A189 Vesicle-associated membrane protein 7; endocytosis 92.24
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 91.88
2vx8_A169 Nucleoporin-like protein RIP, vesicle-associated m 91.67
4afi_A173 AP-3 complex subunit delta-1, vesicle-associated p 90.6
3cpt_A143 Mitogen-activated protein kinase kinase 1- interac 86.81
3cue_A219 Transport protein particle 23 kDa subunit; membran 82.84
3bw6_A144 Synaptobrevin homolog YKT6; YKT6P, farnesylation, 82.72
3kyq_A199 YKT6, synaptobrevin homolog YKT6; V-snare homolog, 82.5
1nrj_A158 Signal recognition particle receptor alpha subunit 82.02
2j3t_C145 Trafficking protein particle complex subunit 1, tr 80.68
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
Probab=100.00  E-value=4e-93  Score=729.35  Aligned_cols=404  Identities=26%  Similarity=0.501  Sum_probs=356.9

Q ss_pred             CeEEEEEEcCCCCEEEEEccCCCCCCcchHHHHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCCEEEEEEecCCCChhHH
Q 014292            1 MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMG   80 (427)
Q Consensus         1 MI~~i~Ild~~G~~l~~r~y~~~~~~~~~~~~f~~~~~~~~~~~~~~pii~~~~~~~~~~~~~~L~fv~~~~~~~n~l~~   80 (427)
                      ||+++||+|++|+++++|+|++ +.++..++.|.+++....+ .+.+|+++.+++.++|+++++|||+++++.++|++++
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~-~~~~~~~~~f~~~v~~~~~-~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~   78 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRD-DIGRNAVDAFRVNVIHARQ-QVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMV   78 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSS-SCCHHHHHHHHHHTTTCSS-CCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHH
T ss_pred             CeEEEEEECCCCCEEEEEecCC-CCChhHHHHHHHHHhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            9999999999999999999998 8888889999998886533 3678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCHHHHHhhHHHHHHHHHHHHhCCcccccChhhHhhccCCCcccccccccccCCCCCccCCCC
Q 014292           81 IEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILP  160 (427)
Q Consensus        81 ~~~L~~~~~~l~~y~~~l~e~~i~~N~~~v~~lldEiid~G~p~~t~~~~l~~~i~~~~~~~k~~~~~~g~~~~~~~~~~  160 (427)
                      ++|||+|+++|++|||+++|++|++||++||++||||+|+|+|++|++++|++++.++++..++... .+     ....+
T Consensus        79 le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~-~~-----~~~~~  152 (435)
T 2vgl_M           79 FEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTK-EE-----QSQIT  152 (435)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccccccccc-cc-----ccccc
Confidence            9999999999999999999999999999999999999999999999999999999999987765311 11     12334


Q ss_pred             CCCCcCCcccCCCCCcccceEEEEEEEeEeEEEecccccccccccCCCCcEEEEEEEEEEEEEEeecCCCeEEEEecCC-
Q 014292          161 GATASCVPWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANP-  239 (427)
Q Consensus       161 ~~~~~~~~WR~~~~~~~~nei~vdv~E~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~G~i~~~s~LsG~P~~~l~ln~~-  239 (427)
                      ++.++++|||+.|++|++|||||||+|+++++++            ++|.+++++|.|.|.|+|+|+|||+|+|+||++ 
T Consensus       153 ~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~------------~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~  220 (435)
T 2vgl_M          153 SQVTGQIGWRREGIKYRRNELFLDVLESVNLLMS------------PQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKI  220 (435)
T ss_dssp             ------CCSSCSCCCCSSCEEEEEEEEEEEEEEC------------TTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSS
T ss_pred             cccccccccccccCCcCcceEEEEEEEEEEEEEc------------CCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchh
Confidence            5567889999999999999999999999999999            999999999999999999999999999999874 


Q ss_pred             --------------------CccccceecceeecCCcCCCceEEEeCCCCeEEEEEEEecCCCCCCEEEEEEEEEcCCcc
Q 014292          240 --------------------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTC  299 (427)
Q Consensus       240 --------------------~~l~~~~fH~cV~~~~~~~~~~l~F~PPdG~f~L~~Y~~~~~~~~P~~v~~~~~~~~~~~  299 (427)
                                          ..++||+|||||++++|+++|.|+|+||||+|+||+||++.+..+||.++|+++. .+++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~-~~~~  299 (435)
T 2vgl_M          221 VIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVRE-VGRT  299 (435)
T ss_dssp             CC-----------------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEEC-CTTT
T ss_pred             hcccccccccccccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEe-cCCC
Confidence                                2578999999999999999999999999999999999999888899999999984 3457


Q ss_pred             EEEEEEEeecCCCC--ceeeEEEEEeCCCCceeeEEEeccccceeEeC--cEEEEEeCCcCCCCceEEEEEEEeecCC-C
Q 014292          300 RISVMVGIRNDPGK--TIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETGL-E  374 (427)
Q Consensus       300 ~~ei~l~~~~~~~~--~~~~v~i~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~i~~~~~~-~  374 (427)
                      ++|++++++++++.  .+++|.|+||+|+.+.++++++++|++ +|++  ++++|+|++++++.+++++|+++|.+.. .
T Consensus       300 ~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~  378 (435)
T 2vgl_M          300 KLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVWKIKRMAGMKESQISAEIELLPTNDK  378 (435)
T ss_dssp             EEEEEEEEEECSCTTSEEEEEEEEEECCSSCCCEEEEESSSEE-EEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCS
T ss_pred             EEEEEEEEeCCCCCCceeeEEEEEEECCCCCCCceEEecceeE-EEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcC
Confidence            89999999876643  699999999999999999999999999 9988  9999999999999999999999997643 3


Q ss_pred             CCCCCCcEEEEEEECceeccccEEeEEEeecC-----CCccccceEEEEecccEEEcC
Q 014292          375 TLRVFPTFQVEFRIMGVALSGLQIDKLDLQNV-----PNRLYKGFRAVTRAGEYEVRS  427 (427)
Q Consensus       375 ~~~~~~~i~v~F~~~~~~~SGl~V~~l~v~~~-----~~~~~k~vry~t~sg~y~iR~  427 (427)
                      ..+.++||+|+|++| +++||++|++|+|.+.     +|+|+|||||+|+||+|++|+
T Consensus       379 ~~~~~~pi~v~F~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~R~  435 (435)
T 2vgl_M          379 KKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  435 (435)
T ss_dssp             CCCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred             cccCCCcEEEEEEEE-ecccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEEcC
Confidence            456789999999999 9999999999999543     799999999999999999996
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A Back     alignment and structure
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Back     alignment and structure
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Back     alignment and structure
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Back     alignment and structure
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A Back     alignment and structure
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A Back     alignment and structure
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Back     alignment and structure
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4 Back     alignment and structure
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 427
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 8e-65
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 6e-36
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 3e-23
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  207 bits (527), Expect = 8e-65
 Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 40/288 (13%)

Query: 167 VPWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLL 226
           + WR   +KY  NE+++D++E ++ +++              G ++   + G V +   L
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMS------------PQGQVLSAHVSGRVVMKSYL 48

Query: 227 SGLPDLTLSFANP---------------------SILHDVRFHPCVRFRPWESHQILSFV 265
           SG+P+      +                        + D  FH CVR   ++S + +SF+
Sbjct: 49  SGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFI 108

Query: 266 PPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGT-CRISVMVGIRNDPGKTIDSIILQFQL 324
           PPDG+F+LM YR  K    P  V P +     T   + V++     P      I ++   
Sbjct: 109 PPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPT 168

Query: 325 PPCILSADLTSNHGTVN-VLSNKICTWSIGRIPKDKAPSLSGTMVL-ETGLETLRVFPTF 382
           P       +    G      S     W I R+   K   +S  + L  T  +     P  
Sbjct: 169 PLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPI 228

Query: 383 QVEFRIM----GVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVR 426
            + F +     G+ +  L++ +  L    + + K  R + R+G YE R
Sbjct: 229 SMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query427
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 100.0
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.95
d3cpta1116 MEK binding partner 1, MP1 {Human (Homo sapiens) [ 91.92
d2fh5a1129 Signal recognition particle receptor alpha subunit 90.26
d1nrja_155 Srx domain of the signal recognition particle rece 83.37
d1ifqa_127 Sec22b {Mouse (Mus musculus) [TaxId: 10090]} 82.86
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-61  Score=466.61  Aligned_cols=246  Identities=26%  Similarity=0.490  Sum_probs=220.8

Q ss_pred             CcccCCCCCcccceEEEEEEEeEeEEEecccccccccccCCCCcEEEEEEEEEEEEEEeecCCCeEEEEecCCC------
Q 014292          167 VPWRPTDVKYANNEVYVDLVEEMDAIINSTKQFSLLHARFRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS------  240 (427)
Q Consensus       167 ~~WR~~~~~~~~nei~vdv~E~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~G~i~~~s~LsG~P~~~l~ln~~~------  240 (427)
                      +|||+.|++|++|||||||+|+++|+++            ++|.++.++|.|+|.|+|+|+|+|+|+|+||++.      
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~------------~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~   68 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMS------------PQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG   68 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEEC------------TTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC-------
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEEC------------CCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccc
Confidence            6999999999999999999999999999            9999999999999999999999999999998753      


Q ss_pred             ---------------ccccceecceeecCCcCCCceEEEeCCCCeEEEEEEEecCCCCCCEEEEEEEEEcCCccEEEEEE
Q 014292          241 ---------------ILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMV  305 (427)
Q Consensus       241 ---------------~l~~~~fH~cV~~~~~~~~~~l~F~PPdG~f~L~~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~l  305 (427)
                                     .|+||+||+||+++.|++++.|+|+||||+|+||+||+..+..+||.+.+++.... ++++++.+
T Consensus        69 ~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~-~~~~~~~i  147 (277)
T d2pr9a1          69 KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG-RTKLEVKV  147 (277)
T ss_dssp             -----------CCCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEET-TTEEEEEE
T ss_pred             ccccccccccccCceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEecc-CcEEEEEE
Confidence                           48999999999999999999999999999999999999988999999999998653 56888888


Q ss_pred             EeecCCC--CceeeEEEEEeCCCCceeeEEEeccccceeEeC--cEEEEEeCCcCCCCceEEEEEEEeecCCCCC-CCCC
Q 014292          306 GIRNDPG--KTIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETGLETL-RVFP  380 (427)
Q Consensus       306 ~~~~~~~--~~~~~v~i~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~i~~~~~~~~~-~~~~  380 (427)
                      +++++.+  ..+++|.|+||+|..+..+++++++|++ +|+.  +.++|+|++++++.+++|+|++++....... +.++
T Consensus       148 ~l~~~~~~~~~~~~v~I~iP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~~~~~  226 (277)
T d2pr9a1         148 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARP  226 (277)
T ss_dssp             EEEECSCTTCEEEEEEEEEECCTTEEEEEEEESSSEE-EEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSCCCCC
T ss_pred             EEEeccCCCeeeeEEEEEeeCCCcccCceEEecCceE-EEeccCCEEEEecccccCCccceEEEEEEeccCCCCccccCC
Confidence            8887643  3899999999999999999999999999 9998  9999999999999999999999996654333 5588


Q ss_pred             cEEEEEEECceeccccEEeEEEeec-----CCCccccceEEEEecccEEEcC
Q 014292          381 TFQVEFRIMGVALSGLQIDKLDLQN-----VPNRLYKGFRAVTRAGEYEVRS  427 (427)
Q Consensus       381 ~i~v~F~~~~~~~SGl~V~~l~v~~-----~~~~~~k~vry~t~sg~y~iR~  427 (427)
                      |++|+|++| +++||++|++|+|.+     .+|+|+|||||+|+||+|++|.
T Consensus       227 pi~v~F~ip-~t~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R~  277 (277)
T d2pr9a1         227 PISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  277 (277)
T ss_dssp             CEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEECC
T ss_pred             cEEEEEEec-ccccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEECC
Confidence            999999999 799999999999943     4689999999999999999995
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition particle receptor alpha-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure