Citrus Sinensis ID: 014301
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYK2 | 493 | High affinity nitrate tra | yes | no | 0.957 | 0.829 | 0.691 | 1e-166 | |
| Q9LPV5 | 502 | High affinity nitrate tra | no | no | 0.992 | 0.844 | 0.592 | 1e-151 | |
| O82811 | 530 | High-affinity nitrate tra | no | no | 0.988 | 0.796 | 0.539 | 1e-133 | |
| Q9FJH8 | 527 | High affinity nitrate tra | no | no | 0.997 | 0.808 | 0.533 | 1e-133 | |
| Q9LMZ9 | 522 | High-affinity nitrate tra | no | no | 0.985 | 0.806 | 0.543 | 1e-132 | |
| Q9LXH0 | 542 | High affinity nitrate tra | no | no | 0.988 | 0.778 | 0.543 | 1e-127 | |
| Q9FJH7 | 539 | High affinity nitrate tra | no | no | 0.988 | 0.782 | 0.534 | 1e-124 | |
| P22152 | 507 | Nitrate transporter OS=Em | no | no | 0.920 | 0.775 | 0.253 | 4e-27 | |
| O33854 | 388 | Probable nitrate transpor | yes | no | 0.585 | 0.644 | 0.275 | 4e-10 | |
| Q8NV31 | 389 | Probable nitrate transpor | yes | no | 0.592 | 0.650 | 0.263 | 1e-08 |
| >sp|Q9LYK2|NRT27_ARATH High affinity nitrate transporter 2.7 OS=Arabidopsis thaliana GN=NRT2.7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 583 bits (1503), Expect = e-166, Method: Compositional matrix adjust.
Identities = 292/422 (69%), Positives = 338/422 (80%), Gaps = 13/422 (3%)
Query: 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVC 61
RAFHLAWLSLFSCFFSTFSIPPL+P+I DLNL+ + V AG+ASF GSIFSRLAMGP+C
Sbjct: 40 RAFHLAWLSLFSCFFSTFSIPPLVPVISSDLNLSASTVSAAGIASFAGSIFSRLAMGPLC 99
Query: 62 DLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGC 121
DL+GPR +SA LS +TAP++LSASLVSSP SFILVRF VGF LANFVANQ+WMSSMFSG
Sbjct: 100 DLIGPRTSSAILSFLTAPVILSASLVSSPTSFILVRFFVGFSLANFVANQYWMSSMFSGN 159
Query: 122 VVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMV 181
V+GLANGVSAGWAN+GAG+SQLLMPLI++ I + AWR++F+ P+ FQ TA++V
Sbjct: 160 VIGLANGVSAGWANVGAGISQLLMPLIYSTIAEF-LPRAVAWRVSFVFPAIFQVTTAVLV 218
Query: 182 LIYGQDLPSGNYKEFKKTK------------TESREEKFVHVLFNGLKNYRGWILGLTYG 229
L+YGQD P GN K + K E FV +L GL NYR WIL L YG
Sbjct: 219 LLYGQDTPHGNRKNSNQNKLTIPEEEEVLVVEEDERSSFVEILIGGLGNYRAWILALLYG 278
Query: 230 FCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIR 289
+ +GVELTTDN+IA YFY+RFGVNL+ AGTIAASFG++N+ SRP GG+ISD +G+RFG+R
Sbjct: 279 YSYGVELTTDNVIAGYFYERFGVNLEAAGTIAASFGISNIASRPAGGMISDALGKRFGMR 338
Query: 290 GRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLG 349
GRLWGLW VQ+ AGLLCVLLGRVNSLWGS+LVM VFSVFVQAA GL FGVVPFVS RSLG
Sbjct: 339 GRLWGLWIVQSVAGLLCVLLGRVNSLWGSILVMWVFSVFVQAASGLVFGVVPFVSTRSLG 398
Query: 350 VISGMTGSGGTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFC 409
V++G+TGSGGTVGAVVTQ LLFSG KQ SIS+MGLM V L V+ IYFPQWGGM C
Sbjct: 399 VVAGITGSGGTVGAVVTQFLLFSGDDVRKQRSISLMGLMTFVFALSVTSIYFPQWGGMCC 458
Query: 410 GP 411
GP
Sbjct: 459 GP 460
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Involved in high-affinity nitrate transport. Controls nitrate content in seeds. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPV5|NRT25_ARATH High affinity nitrate transporter 2.5 OS=Arabidopsis thaliana GN=NRT2.5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1381), Expect = e-151, Method: Compositional matrix adjust.
Identities = 253/427 (59%), Positives = 325/427 (76%), Gaps = 3/427 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHL+W F CF STF+ PPL+P+IR +LNLT TD+G AG+AS G++F+R+ MG
Sbjct: 44 MRAFHLSWFQFFCCFVSTFAAPPLLPVIRENLNLTATDIGNAGIASVSGAVFARIVMGTA 103
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDL GPR+ASA L+L TAP V + + SP FI+VRF GF LA FV+ QFWMSSMFSG
Sbjct: 104 CDLFGPRLASAALTLSTAPAVYFTAGIKSPIGFIMVRFFAGFSLATFVSTQFWMSSMFSG 163
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
VVG ANG++AGW N+G G +QL+MP++F+ I ++ TAWR+AF +P FQ L+A
Sbjct: 164 PVVGSANGIAAGWGNLGGGATQLIMPIVFSLIRNMGATKFTAWRIAFFIPGLFQTLSAFA 223
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL++GQDLP G+Y K+ E ++ V+ NG+KNYRGWI L YG+CFGVELT DN
Sbjct: 224 VLLFGQDLPDGDYWAMHKSG-EREKDDVGKVISNGIKNYRGWITALAYGYCFGVELTIDN 282
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
IIA+YF+DRF + LQ AG IAASFG+AN F+RP GG+ SD M RRFG+RGRLW W VQT
Sbjct: 283 IIAEYFFDRFHLKLQTAGIIAASFGLANFFARPGGGIFSDFMSRRFGMRGRLWAWWIVQT 342
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
+ G+LC LG+++SL S++VM VFSVFVQAA GLTFGVVPF+S+RSLGV+SGMTG+GG
Sbjct: 343 SGGVLCACLGQISSLTVSIIVMLVFSVFVQAACGLTFGVVPFISRRSLGVVSGMTGAGGN 402
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
VGAV+TQ++ F GS ++++T I++MG+M I C+LP+ LIYFPQWGGMFCGPS + +
Sbjct: 403 VGAVLTQLIFFKGSTYTRETGITLMGVMSIACSLPICLIYFPQWGGMFCGPS--SKKVTE 460
Query: 421 EHYRLLQ 427
E Y L +
Sbjct: 461 EDYYLAE 467
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Involved in high-affinity nitrate transport. Might be involved in the transfer of nitrate from stored pools to cytoplasm. Arabidopsis thaliana (taxid: 3702) |
| >sp|O82811|NRT21_ARATH High-affinity nitrate transporter 2.1 OS=Arabidopsis thaliana GN=NRT2.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/423 (53%), Positives = 298/423 (70%), Gaps = 1/423 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MR FHL+W+S +CF STF+ PL+PIIR +LNLT D+G AG+AS GSIFSRL MG V
Sbjct: 62 MRTFHLSWISFSTCFVSTFAAAPLVPIIRENLNLTKQDIGNAGVASVSGSIFSRLVMGAV 121
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDLLGPR A L +++AP V S S VS FI VRF++GFCLA FV+ Q+WMS+MF+
Sbjct: 122 CDLLGPRYGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFNS 181
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
++GL NG +AGW NMG G++QLLMP+++ I TAWR+AF VP + I+
Sbjct: 182 QIIGLVNGTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGIL 241
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL GQDLP GN +K E ++KF +L+ + NYR WI L YG+ GVEL+TDN
Sbjct: 242 VLNLGQDLPDGNRATLEKAG-EVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDN 300
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
+IA+YF+DRF + L AG IAA FGMAN F+RP GG SD + FG+RGRLW LW +QT
Sbjct: 301 VIAEYFFDRFHLKLHTAGLIAACFGMANFFARPAGGYASDFAAKYFGMRGRLWTLWIIQT 360
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
A GL CV LGR N+L +V+ M +FS+ QAA G TF +VPFVS+R+LG+ISG+TG+GG
Sbjct: 361 AGGLFCVWLGRANTLVTAVVAMVLFSMGAQAACGATFAIVPFVSRRALGIISGLTGAGGN 420
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
G+ +TQ+L FS S F+ + ++ MG+M++ CTLPV+L++FPQWG MF PS DP + +
Sbjct: 421 FGSGLTQLLFFSTSHFTTEQGLTWMGVMIVACTLPVTLVHFPQWGSMFLPPSTDPVKGTE 480
Query: 421 EHY 423
HY
Sbjct: 481 AHY 483
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Involved in nitrate transport, but does not seem to be able to mediate transport by its own. Acts as a dual component transporter with NTR3.1. Acts as a repressor of lateral root initiation under high sucrose/low nitrate conditions. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJH8|NRT24_ARATH High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/427 (53%), Positives = 302/427 (70%), Gaps = 1/427 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MR FHLAW+S F+CF STF+ PL+PIIR +LNLT DVG AG+AS GSIFSRL MG V
Sbjct: 62 MRTFHLAWISFFTCFISTFAAAPLVPIIRDNLNLTRQDVGNAGVASVSGSIFSRLVMGAV 121
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDLLGPR A L +++AP V S S V +I VRF++GFCLA FV+ Q+WMS+MF+G
Sbjct: 122 CDLLGPRYGCAFLVMLSAPTVFSMSFVGGAGGYITVRFMIGFCLATFVSCQYWMSTMFNG 181
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
++GL NG +AGW NMG GV+QLLMP+++ I L + TAWR+AF VP + I+
Sbjct: 182 QIIGLVNGTAAGWGNMGGGVTQLLMPMVYEIIRRLGSTSFTAWRMAFFVPGWMHIIMGIL 241
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL GQDLP GN +K K ++KF VL+ + NYR W+ L YG+ GVELTTDN
Sbjct: 242 VLTLGQDLPDGNRSTLEK-KGAVTKDKFSKVLWYAITNYRTWVFVLLYGYSMGVELTTDN 300
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
+IA+YF+DRF + L AG IAASFGMAN F+RP+GG SD RRFG+RGRLW LW +QT
Sbjct: 301 VIAEYFFDRFHLKLHTAGIIAASFGMANFFARPIGGWASDIAARRFGMRGRLWTLWIIQT 360
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
G C+ LGR +L +V+ M +FS+ QAA G TF ++PF+S+RSLG+ISG+TG+GG
Sbjct: 361 LGGFFCLWLGRATTLPTAVVFMILFSLGAQAACGATFAIIPFISRRSLGIISGLTGAGGN 420
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
G+ +TQ++ FS S FS + ++ MG+M++ CTLPV+L++FPQWG MF + D + +
Sbjct: 421 FGSGLTQLVFFSTSTFSTEQGLTWMGVMIMACTLPVTLVHFPQWGSMFLPSTEDEVKSTE 480
Query: 421 EHYRLLQ 427
E+Y + +
Sbjct: 481 EYYYMKE 487
|
Involved in high-affinity nitrate transport. Might be involved in the transfer of nitrate from stored pools to cytoplasm. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LMZ9|NRT22_ARATH High-affinity nitrate transporter 2.2 OS=Arabidopsis thaliana GN=NRT2.2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1218), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/423 (54%), Positives = 300/423 (70%), Gaps = 2/423 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MR FHL+W+S +CF STF+ PLIPIIR +LNLT D+G AG+AS GSIFSRL MG V
Sbjct: 60 MRTFHLSWISFSTCFVSTFAAAPLIPIIRENLNLTKHDIGNAGVASVSGSIFSRLVMGAV 119
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDLLGPR A L +++AP V S S VS FI VRF++GFCLA FV+ Q+WMS+MF+
Sbjct: 120 CDLLGPRYGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFNS 179
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
++GL NG +AGW NMG G++QLLMP+++ I TAWR+AF VP + I+
Sbjct: 180 QIIGLVNGTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGIL 239
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL GQDLP GN +K E ++KF +L+ + NYR WI L YG+ GVEL+TDN
Sbjct: 240 VLTLGQDLPGGNRAAMEKAG-EVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDN 298
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
+IA+YF+DRF + L AG IAA FGMAN F+RP GG SD +RFG+RGRLW LW +QT
Sbjct: 299 VIAEYFFDRFHLKLHTAGIIAACFGMANFFARPAGGWASDIAAKRFGMRGRLWTLWIIQT 358
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
+ GL CV LGR N+L +V+ M +FS+ QAA G TF +VPFVS+R+LG+ISG+TG+GG
Sbjct: 359 SGGLFCVWLGRANTLVTAVVSMVLFSLGAQAACGATFAIVPFVSRRALGIISGLTGAGGN 418
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
G+ +TQ++ FS S+F+ + ++ MG+M++ CTLPV+LI+FPQWG MF PS D + A
Sbjct: 419 FGSGLTQLVFFSTSRFTTEEGLTWMGVMIVACTLPVTLIHFPQWGSMFFPPSNDSVD-AT 477
Query: 421 EHY 423
EHY
Sbjct: 478 EHY 480
|
Involved in high-affinity nitrate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LXH0|NRT26_ARATH High affinity nitrate transporter 2.6 OS=Arabidopsis thaliana GN=NRT2.6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/423 (54%), Positives = 297/423 (70%), Gaps = 1/423 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHL W+S F+CF STF+ PL+P+IR +L+LT TD+G AG+AS G+IFSRLAMG V
Sbjct: 72 MRAFHLGWISFFTCFISTFAAAPLVPVIRDNLDLTKTDIGNAGVASVSGAIFSRLAMGAV 131
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDLLG R +A ++TAP V S S V+ S++ VRF++GFCLA FV+ Q+W S MF+G
Sbjct: 132 CDLLGARYGTAFSLMLTAPAVFSMSFVADAGSYLAVRFMIGFCLATFVSCQYWTSVMFTG 191
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
++GL NG + GW +MG GV+QLLMP++F I TAWR AF +P Q + I+
Sbjct: 192 KIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLTGATPFTAWRFAFFIPGILQIVMGIL 251
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL GQDLP GN +K+ S++ KF V + +KNYR WIL + YGF GVELT +N
Sbjct: 252 VLTLGQDLPDGNLSTLQKSGQVSKD-KFSKVFWFAVKNYRTWILFMLYGFSMGVELTINN 310
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
+I+ YFYDRF + L AG IAASFGMAN F+RP GG SD R FG+RGRLW LW +QT
Sbjct: 311 VISGYFYDRFNLTLHTAGIIAASFGMANFFARPFGGYASDVAARLFGMRGRLWILWILQT 370
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
L C+ LGR +SL ++L M +FS+ QAA G FGV PFVS+RSLG+ISG+TG+GG
Sbjct: 371 VGALFCIWLGRASSLPIAILAMMLFSMGTQAACGALFGVAPFVSRRSLGLISGLTGAGGN 430
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
G+ VTQ+L FS S+FS +S+MG+M +VC+LPV+ I+FPQWG MF PS D + +
Sbjct: 431 FGSGVTQLLFFSSSRFSTAEGLSLMGVMAVVCSLPVAFIHFPQWGSMFLRPSQDGEKSKE 490
Query: 421 EHY 423
EHY
Sbjct: 491 EHY 493
|
Involved in high-affinity nitrate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJH7|NRT23_ARATH High affinity nitrate transporter 2.3 OS=Arabidopsis thaliana GN=NRT2.3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/423 (53%), Positives = 293/423 (69%), Gaps = 1/423 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHL WLS F+CF STF+ PL+PIIR +L+LT TD+G AG+AS G+IFSRLAMG V
Sbjct: 69 MRAFHLGWLSFFTCFISTFAAAPLVPIIRDNLDLTKTDIGNAGVASVSGAIFSRLAMGAV 128
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDLLG R +A ++TAP V S S V P ++ VRF++GFCLA FV+ Q+W S MF+G
Sbjct: 129 CDLLGARYGTAFSLMLTAPTVFSMSFVGGPSGYLGVRFMIGFCLATFVSCQYWTSVMFNG 188
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
++GL NG + GW +MG GV+QLLMP++F I AWR+AF VP Q + I+
Sbjct: 189 KIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLAGATPFMAWRIAFFVPGFLQVVMGIL 248
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL GQDLP GN +K+ S++ KF V + +KNYR WIL + YG G+ELT +N
Sbjct: 249 VLSLGQDLPDGNLSTLQKSGQVSKD-KFSKVFWFAVKNYRTWILFVLYGSSMGIELTINN 307
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
+I+ YFYDRF + LQ AG +AASFGMAN +RP GG SD R FG+RGRLW LW QT
Sbjct: 308 VISGYFYDRFNLKLQTAGIVAASFGMANFIARPFGGYASDVAARVFGMRGRLWTLWIFQT 367
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
L C+ LGR +SL ++L M +FS+ QAA G FGV PFVS+RSLG+ISG+TG+GG
Sbjct: 368 VGALFCIWLGRASSLPIAILAMMLFSIGTQAACGALFGVAPFVSRRSLGLISGLTGAGGN 427
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
G+ +TQ+L FS ++FS +S+MG+M ++CTLPV+ I+FPQWG MF PS D +
Sbjct: 428 FGSGLTQLLFFSSARFSTAEGLSLMGVMAVLCTLPVAFIHFPQWGSMFLRPSTDGERSQE 487
Query: 421 EHY 423
E+Y
Sbjct: 488 EYY 490
|
Involved in high-affinity nitrate transport. Acts as a dual component transporter with NTR3.1. Arabidopsis thaliana (taxid: 3702) |
| >sp|P22152|CRNA_EMENI Nitrate transporter OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=crnA PE=2 SV=2 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 119/469 (25%), Positives = 197/469 (42%), Gaps = 76/469 (16%)
Query: 2 RAFHLAWLSLFSCFFSTFSIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
R F +W F S ++ PPL+ + IR DL+++ T + + + + L ++ RL GP+
Sbjct: 34 RVFFFSWFGFMLAFLSWYAFPPLLTVTIRDDLDMSQTQIANSNIIALLATLLVRLICGPL 93
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CD GPR+ L L+ + A LV+SPQ I +RF +G FV Q W + F
Sbjct: 94 CDRFGPRLVFIGLLLVGSIPTAMAGLVTSPQGLIALRFFIGILGGTFVPCQVWCTGFFDK 153
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTA-ITSLNVGTHTAWRLAFIVPSTFQALTAI 179
+VG AN ++AG N G G++ +MP IF + I + H AWR+A+IVP A+
Sbjct: 154 SIVGTANSLAAGLGNAGGGITYFVMPAIFDSLIRDQGLPAHKAWRVAYIVPFILIVAAAL 213
Query: 180 MVLIYGQDLPSGNYKE---FKKTKTESREEKFVHVLFNGLKNYR--GWILGLTYGFCFGV 234
+L D P+G + E + K T++ + + L +G ++ R G + Y
Sbjct: 214 GMLFTCDDTPTGKWSERHIWMKEDTQTASKGNIVDLSSGAQSSRPSGPPSIIAYAIPDVE 273
Query: 235 ELTTDNIIAQYF-----YDRFGVN-------------------LQVAGTIAASFGMANLF 270
+ T+ + +D F N + VA A SFG
Sbjct: 274 KKGTETPLEPQSQAIGQFDAFRANAVASPSRKEAFNVIFSLATMAVAVPYACSFGS---- 329
Query: 271 SRPMGGVISDRMGRRFGIRGRLW-GLWAV---------QTAAGLLCVLLGR-VNSLWGSV 319
+ ++ D + F G+ G WA + A G L L R N+ W
Sbjct: 330 ELAINSILGDYYDKNFPYMGQTQTGKWAAMFGFLNIVCRPAGGFLADFLYRKTNTPWAKK 389
Query: 320 LVMCVFSV-----------------------------FVQAAGGLTFGVVPFVSKRSLGV 350
L++ V F+++ G F +VP V + G+
Sbjct: 390 LLLSFLGVVMGAFMIAMGFSDPKSEATMFGLTAGLAFFLESCNGAIFSLVPHVHPYANGI 449
Query: 351 ISGMTGSGGTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLI 399
+SGM G G +G ++ ++F S I ++G++ + + VS +
Sbjct: 450 VSGMVGGFGNLGGIIFA-IIFRYSHHDYARGIWILGVISMAVFISVSWV 497
|
Permease for nitrate uptake. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
| >sp|O33854|NART_STACT Probable nitrate transporter NarT OS=Staphylococcus carnosus (strain TM300) GN=narT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 118/276 (42%), Gaps = 26/276 (9%)
Query: 9 LSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTA-GMASFLGSIFSRLAMGPVCDLLGPR 67
LSL + F I PL+P+I D+ +T + + + LGS+ R+ G + +++G +
Sbjct: 15 LSLVAGFMVWSIIAPLMPMISQDIKITSSQISIVLAIPVILGSVL-RIPFGYLTNIIGAK 73
Query: 68 -VASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLA 126
V ++ ++ PI L S S +L F +G A F + F VGLA
Sbjct: 74 WVFFSSFIILLFPIFL-LSQAQSVNMLMLAGFFLGVGGAVFSVGVTSIPKYFPKDKVGLA 132
Query: 127 NGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQ 186
NG+ G N+G VS L P I AI G + RL IV + F + +
Sbjct: 133 NGIY-GMGNLGTAVSSFLAPPIAGAI-----GWQSTVRLYLIVMAVFAIVMFFL------ 180
Query: 187 DLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYF 246
G+ KE K + K + LK+ R + L Y FG + + +Y
Sbjct: 181 ----GDAKEPKVKIPLVAQTK------DLLKDLRTYYLSFWYFITFGSFVAFGIFLPKYL 230
Query: 247 YDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRM 282
D + + AG A F F RP+GG+I D++
Sbjct: 231 VDHYELTTVDAGIRAGIFIAIATFLRPLGGIIGDKI 266
|
Probably required for nitrate uptake under anoxic conditions. Also possibly involved in excretion of nitrite produced by the dissimilatory reduction of nitrate. Staphylococcus carnosus (strain TM300) (taxid: 396513) |
| >sp|Q8NV31|NART_STAAW Probable nitrate transporter NarT OS=Staphylococcus aureus (strain MW2) GN=narT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 117/277 (42%), Gaps = 24/277 (8%)
Query: 6 LAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTA-GMASFLGSIFSRLAMGPVCDLL 64
L LSL F + I PL+P I+ D+N+T+ + + LGS+ R+ G + +++
Sbjct: 12 LQTLSLVVGFMAWSIIAPLMPFIKQDVNVTEGQISIILAIPVILGSVL-RVPFGYLTNIV 70
Query: 65 GPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVG 124
G + T ++ + S +P + F +G A F + F VG
Sbjct: 71 GAKWVFFTSFIVLLFPIFFLSQAQTPGMLMASGFFLGVGGAIFSVGVTSVPKYFPKEKVG 130
Query: 125 LANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIY 184
LANG+ G N+G VS L P I I G T R I+ AL A+++ I+
Sbjct: 131 LANGIY-GMGNIGTAVSSFLAPPIAGII-----GWQTTVRSYLII----IALFALIMFIF 180
Query: 185 GQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQ 244
G +E K + K + KNY+ + L Y FG + +
Sbjct: 181 GDT------QERKIKVPLMAQMKTLS------KNYKLYYLSYWYFITFGAFVAFGIFLPN 228
Query: 245 YFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDR 281
Y + FG++ AG + F F RP+GG++ D+
Sbjct: 229 YLVNHFGIDKVDAGIRSGVFIALATFLRPIGGILGDK 265
|
Probably required for nitrate uptake under anoxic conditions. Also possibly involved in excretion of nitrite produced by the dissimilatory reduction of nitrate. Staphylococcus aureus (strain MW2) (taxid: 196620) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | ||||||
| 225452384 | 479 | PREDICTED: high affinity nitrate transpo | 0.995 | 0.887 | 0.751 | 0.0 | |
| 147820193 | 455 | hypothetical protein VITISV_021075 [Viti | 0.995 | 0.934 | 0.749 | 0.0 | |
| 255567369 | 465 | nitrate transporter, putative [Ricinus c | 0.995 | 0.913 | 0.749 | 0.0 | |
| 224060098 | 471 | predicted protein [Populus trichocarpa] | 0.997 | 0.904 | 0.757 | 0.0 | |
| 297811587 | 490 | ATNRT2.7 [Arabidopsis lyrata subsp. lyra | 0.983 | 0.857 | 0.681 | 1e-167 | |
| 15241440 | 493 | high affinity nitrate transporter 2.7 [A | 0.957 | 0.829 | 0.691 | 1e-164 | |
| 385724802 | 508 | nitrate transporter [Gossypium hirsutum] | 0.988 | 0.830 | 0.633 | 1e-155 | |
| 224121818 | 508 | predicted protein [Populus trichocarpa] | 0.988 | 0.830 | 0.614 | 1e-150 | |
| 15222118 | 502 | nitrate transporter2.5 [Arabidopsis thal | 0.992 | 0.844 | 0.592 | 1e-150 | |
| 255573963 | 504 | nitrate transporter, putative [Ricinus c | 0.988 | 0.837 | 0.624 | 1e-147 |
| >gi|225452384|ref|XP_002273595.1| PREDICTED: high affinity nitrate transporter 2.5-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/427 (75%), Positives = 374/427 (87%), Gaps = 2/427 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHLAWLSLF+ FFSTF+IPPL+PIIR DL LTDTD+G AG+ASF+GSIFSRLAMG
Sbjct: 55 MRAFHLAWLSLFATFFSTFAIPPLLPIIREDLKLTDTDIGNAGIASFMGSIFSRLAMGTA 114
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CD+ GPR+A ATLSL+T PIV SA +S+PQSFI++RFL+GF LANF++NQFWMSSMFSG
Sbjct: 115 CDVFGPRIACATLSLLTVPIVFSACFISTPQSFIVLRFLIGFSLANFISNQFWMSSMFSG 174
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
CVVGLANGV+AGWAN+GAG +QL+MPLIF ITS NV TAWR+AF+VP+ FQA+TA+M
Sbjct: 175 CVVGLANGVAAGWANVGAGATQLIMPLIFAFITSFNVPAFTAWRIAFVVPALFQAVTALM 234
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL YGQDLP GNYK +++ T+ RE F VL +GL NYRGW+LGLTYG+CFGVELT DN
Sbjct: 235 VLFYGQDLPDGNYKRRQRSSTKPRESVF-KVLLHGLSNYRGWVLGLTYGYCFGVELTVDN 293
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
IIAQYFYDRF +N++ AG IAASFG+ N FSRP GGVISD MGRRFGIRGRLW LW VQT
Sbjct: 294 IIAQYFYDRFNLNIETAGAIAASFGVVNFFSRPAGGVISDEMGRRFGIRGRLWSLWIVQT 353
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
AGLLC+LLGRVN+L S+LV+C FSVFVQAA GLTFGVVPFVSKRSLGVISGMTGSGGT
Sbjct: 354 VAGLLCILLGRVNTLGASILVICAFSVFVQAASGLTFGVVPFVSKRSLGVISGMTGSGGT 413
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
VGAVVTQ+LLFSGSK+SK+TSIS+MG+MMIVC++PV+ IYFPQWGGMFCGPS+D ++ D
Sbjct: 414 VGAVVTQLLLFSGSKYSKETSISLMGVMMIVCSIPVTFIYFPQWGGMFCGPSYD-SDWVD 472
Query: 421 EHYRLLQ 427
E YRL++
Sbjct: 473 EEYRLIE 479
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147820193|emb|CAN60427.1| hypothetical protein VITISV_021075 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/427 (74%), Positives = 372/427 (87%), Gaps = 2/427 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHLAWLSLF+ FFSTF+IPPL+PIIR DL LTDTD+G AG+ASF+GSIFSRLAMG
Sbjct: 31 MRAFHLAWLSLFATFFSTFAIPPLLPIIREDLKLTDTDIGNAGIASFMGSIFSRLAMGTA 90
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CD+ GPR+A ATLSL+T PIV SA +S+PQSFI++RFL+GF LANF++NQFWMSSMFSG
Sbjct: 91 CDVFGPRIACATLSLLTVPIVFSACFISTPQSFIVLRFLIGFSLANFISNQFWMSSMFSG 150
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
CVVGLANGV+AGWAN+GAG +QL+MPLIF ITS NV TAWR+AF+VP+ FQA+TA+M
Sbjct: 151 CVVGLANGVAAGWANVGAGATQLIMPLIFAFITSFNVPAFTAWRIAFVVPALFQAVTALM 210
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL YGQDLP GNYK +++ T+ RE F VL +GL NYRGW+LGLTYG+CFGVELT DN
Sbjct: 211 VLFYGQDLPDGNYKRRQRSSTKPRESVF-KVLLHGLSNYRGWVLGLTYGYCFGVELTVDN 269
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
IIAQYFYDRF +N + AG IAASFG+ N FSRP GGVISD MGRRFGIRGRLW LW VQT
Sbjct: 270 IIAQYFYDRFNLNXETAGAIAASFGVVNFFSRPAGGVISDEMGRRFGIRGRLWSLWIVQT 329
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
AGLLC+LLGRVN+L S+LV+C FSVFVQAA GLTFGVVPFVSKRSLGVISGMTGSGGT
Sbjct: 330 VAGLLCILLGRVNTLGASILVICAFSVFVQAASGLTFGVVPFVSKRSLGVISGMTGSGGT 389
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
VGAVVTQ+LLFSGSK+SK+TSIS+MG+MMIVC++P + IYFPQWGGMFCGPS+D ++ D
Sbjct: 390 VGAVVTQLLLFSGSKYSKETSISLMGVMMIVCSIPXTFIYFPQWGGMFCGPSYD-SDWVD 448
Query: 421 EHYRLLQ 427
E YRL++
Sbjct: 449 EEYRLIE 455
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567369|ref|XP_002524664.1| nitrate transporter, putative [Ricinus communis] gi|223536025|gb|EEF37683.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/431 (74%), Positives = 379/431 (87%), Gaps = 6/431 (1%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
M AFHLAWLSLF+CFFSTFSIPPL+PIIR DL+L+DTD+G A +ASF+GSIFSRLAMGPV
Sbjct: 35 MVAFHLAWLSLFTCFFSTFSIPPLVPIIRRDLHLSDTDIGHAAIASFVGSIFSRLAMGPV 94
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDLLGPR+ASA+LSLITAPI+LS ++SP SFIL+RFLVGFCLANFVANQFWM+ MFSG
Sbjct: 95 CDLLGPRIASASLSLITAPIILSTCFITSPSSFILIRFLVGFCLANFVANQFWMTCMFSG 154
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGT-HTAWRLAFIVPSTFQALTAI 179
VVGLANGV+AGWAN GAGV+QL+MP I++ I + + + TAWR++F++P FQA A+
Sbjct: 155 SVVGLANGVAAGWANTGAGVAQLVMPQIYSLIKTCRLTSPSTAWRVSFVIPGIFQAFMAV 214
Query: 180 MVLIYGQDLPSGN--YKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELT 237
MVL+YGQDLPSG+ YK+ + +K + +++ F+ VLF+GL NYRGWILGLTYG+CFG ELT
Sbjct: 215 MVLVYGQDLPSGSCKYKDSEHSK-QPKKDNFLGVLFDGLTNYRGWILGLTYGYCFGSELT 273
Query: 238 TDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWA 297
TDN+IA YFYDRFG+N+QVAG IAASFGMAN F+RPMGGV+SDRMG++FGIRGRLWGLW
Sbjct: 274 TDNMIAGYFYDRFGLNVQVAGMIAASFGMANFFTRPMGGVLSDRMGKKFGIRGRLWGLWM 333
Query: 298 VQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGS 357
VQT AG+LCV+LGRV+SLW SV VMC+FSVFVQAA GLTFGVVPFVSKRSLGVISGMTGS
Sbjct: 334 VQTMAGILCVILGRVSSLWTSVAVMCLFSVFVQAASGLTFGVVPFVSKRSLGVISGMTGS 393
Query: 358 GGTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNE 417
GGTVGAVVTQ+LLFSGS+FSKQTSIS+MGLMMIVCTLPV+LIYFP GGMFCGPS D +
Sbjct: 394 GGTVGAVVTQLLLFSGSRFSKQTSISLMGLMMIVCTLPVTLIYFPHSGGMFCGPSGDTSS 453
Query: 418 PAD--EHYRLL 426
+ E Y LL
Sbjct: 454 THEDAEDYHLL 464
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060098|ref|XP_002300040.1| predicted protein [Populus trichocarpa] gi|222847298|gb|EEE84845.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/429 (75%), Positives = 377/429 (87%), Gaps = 3/429 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHLAWLSLFSCFFSTFSIPPL+PIIR DL LT+TD+G AG+ASF+GSIFSRLAMGP
Sbjct: 35 MRAFHLAWLSLFSCFFSTFSIPPLLPIIRDDLKLTETDIGNAGIASFVGSIFSRLAMGPA 94
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDL+GPR+ASATLSL TAPI++SASLV+SP FIL+RF VGF LANFVA+QFWM+SMFS
Sbjct: 95 CDLMGPRLASATLSLATAPIIMSASLVTSPTCFILIRFGVGFSLANFVASQFWMTSMFSP 154
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIF-TAITSLNVGTHTAWRLAFIVPSTFQALTAI 179
VVGLANGVSAGWANMGAGV+QL+MP I+ I+ L++ TAWR++F++P FQA+TAI
Sbjct: 155 SVVGLANGVSAGWANMGAGVAQLVMPQIYYLLISLLDLPLSTAWRVSFLIPGLFQAVTAI 214
Query: 180 MVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTD 239
MVL YGQDLPSG+YK+F+K ++ ++ F +L+NGL NYRGWIL LTYG+CFG ELTTD
Sbjct: 215 MVLAYGQDLPSGSYKDFRKA-IKTPKDNFSEMLYNGLTNYRGWILALTYGYCFGSELTTD 273
Query: 240 NIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQ 299
NIIA YFYDRFGVNLQVAG IAAS G+ANLFSRPMGG +SD+MGR FG+RGRLWGLW VQ
Sbjct: 274 NIIAHYFYDRFGVNLQVAGMIAASVGLANLFSRPMGGALSDKMGRSFGMRGRLWGLWLVQ 333
Query: 300 TAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGG 359
T AGLLCVLLGRV SLWGS+ V+C+FSVFVQAA GLTFGVVPFVSKRSLGVI+GMTGSGG
Sbjct: 334 TVAGLLCVLLGRVTSLWGSIAVLCIFSVFVQAASGLTFGVVPFVSKRSLGVIAGMTGSGG 393
Query: 360 TVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPA 419
TVGAVVTQMLLFSGS+FS QTSIS+MG+MMI+CTLPV+LIYFP+WGGMF GPS + + +
Sbjct: 394 TVGAVVTQMLLFSGSRFSMQTSISLMGIMMIICTLPVTLIYFPRWGGMFFGPSCNTSSSS 453
Query: 420 -DEHYRLLQ 427
+E Y LL
Sbjct: 454 PEEDYHLLH 462
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811587|ref|XP_002873677.1| ATNRT2.7 [Arabidopsis lyrata subsp. lyrata] gi|297319514|gb|EFH49936.1| ATNRT2.7 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 298/437 (68%), Positives = 348/437 (79%), Gaps = 17/437 (3%)
Query: 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVC 61
RAFHLAWLSLFSCFFSTFSIPPL+P+I DLNL+ + V TAG+ASF GSIFSRLAMGP+C
Sbjct: 40 RAFHLAWLSLFSCFFSTFSIPPLVPVISSDLNLSASTVSTAGIASFAGSIFSRLAMGPLC 99
Query: 62 DLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGC 121
DL+GPR +SA LS +TAP++LSASLVSSP+SFILVRF VGF LANFVANQ+WMSSMFSG
Sbjct: 100 DLIGPRTSSAILSFLTAPVILSASLVSSPRSFILVRFFVGFSLANFVANQYWMSSMFSGN 159
Query: 122 VVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMV 181
V+GLANGVSAGWAN+GAG+SQLLMPLI+ I + AWR++F+ P+ FQ TA++V
Sbjct: 160 VIGLANGVSAGWANVGAGISQLLMPLIYATIAEFS-PRSIAWRVSFVFPAIFQVTTAVLV 218
Query: 182 LIYGQDLPSGNYKEFKKTKTESREEK------------FVHVLFNGLKNYRGWILGLTYG 229
L+YGQD P+GN K + K + EE+ FV +L GL NYR WIL L YG
Sbjct: 219 LLYGQDTPNGNRKNSNQNKIINPEEEVLVVQGEEGRSSFVEILIGGLGNYRAWILALLYG 278
Query: 230 FCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIR 289
+ +GVELTTDN+IA YFY+RFGVNL+ AGTIAASFG++N+ SRP GG+ISD +G+RFG+R
Sbjct: 279 YSYGVELTTDNVIAGYFYERFGVNLEAAGTIAASFGISNIASRPAGGMISDALGKRFGMR 338
Query: 290 GRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLG 349
GRLWGLW VQ+ AGLLCVLLGRVNSLW S+ VM VFSVFVQAA GL FGVVPFVS RSLG
Sbjct: 339 GRLWGLWVVQSVAGLLCVLLGRVNSLWKSIAVMWVFSVFVQAASGLVFGVVPFVSTRSLG 398
Query: 350 VISGMTGSGGTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFC 409
V++G+TGSGGTVGAVVTQ LLFSG KQ SIS+MGLM V +L V+ IYFPQWGGM C
Sbjct: 399 VVAGITGSGGTVGAVVTQFLLFSGDGVRKQKSISLMGLMTFVFSLSVTSIYFPQWGGMCC 458
Query: 410 GPSFDPNEPADEHYRLL 426
GPS E D RLL
Sbjct: 459 GPS----EEEDLSRRLL 471
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241440|ref|NP_196961.1| high affinity nitrate transporter 2.7 [Arabidopsis thaliana] gi|75264407|sp|Q9LYK2.1|NRT27_ARATH RecName: Full=High affinity nitrate transporter 2.7; Short=AtNRT2:7 gi|7573306|emb|CAB87624.1| high affinity nitrate transporter-like protein [Arabidopsis thaliana] gi|14334784|gb|AAK59570.1| putative high affinity nitrate transporter protein [Arabidopsis thaliana] gi|15810649|gb|AAL07249.1| putative high affinity nitrate transporter protein [Arabidopsis thaliana] gi|332004666|gb|AED92049.1| high affinity nitrate transporter 2.7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/422 (69%), Positives = 338/422 (80%), Gaps = 13/422 (3%)
Query: 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVC 61
RAFHLAWLSLFSCFFSTFSIPPL+P+I DLNL+ + V AG+ASF GSIFSRLAMGP+C
Sbjct: 40 RAFHLAWLSLFSCFFSTFSIPPLVPVISSDLNLSASTVSAAGIASFAGSIFSRLAMGPLC 99
Query: 62 DLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGC 121
DL+GPR +SA LS +TAP++LSASLVSSP SFILVRF VGF LANFVANQ+WMSSMFSG
Sbjct: 100 DLIGPRTSSAILSFLTAPVILSASLVSSPTSFILVRFFVGFSLANFVANQYWMSSMFSGN 159
Query: 122 VVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMV 181
V+GLANGVSAGWAN+GAG+SQLLMPLI++ I + AWR++F+ P+ FQ TA++V
Sbjct: 160 VIGLANGVSAGWANVGAGISQLLMPLIYSTIAEF-LPRAVAWRVSFVFPAIFQVTTAVLV 218
Query: 182 LIYGQDLPSGNYKEFKKTK------------TESREEKFVHVLFNGLKNYRGWILGLTYG 229
L+YGQD P GN K + K E FV +L GL NYR WIL L YG
Sbjct: 219 LLYGQDTPHGNRKNSNQNKLTIPEEEEVLVVEEDERSSFVEILIGGLGNYRAWILALLYG 278
Query: 230 FCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIR 289
+ +GVELTTDN+IA YFY+RFGVNL+ AGTIAASFG++N+ SRP GG+ISD +G+RFG+R
Sbjct: 279 YSYGVELTTDNVIAGYFYERFGVNLEAAGTIAASFGISNIASRPAGGMISDALGKRFGMR 338
Query: 290 GRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLG 349
GRLWGLW VQ+ AGLLCVLLGRVNSLWGS+LVM VFSVFVQAA GL FGVVPFVS RSLG
Sbjct: 339 GRLWGLWIVQSVAGLLCVLLGRVNSLWGSILVMWVFSVFVQAASGLVFGVVPFVSTRSLG 398
Query: 350 VISGMTGSGGTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFC 409
V++G+TGSGGTVGAVVTQ LLFSG KQ SIS+MGLM V L V+ IYFPQWGGM C
Sbjct: 399 VVAGITGSGGTVGAVVTQFLLFSGDDVRKQRSISLMGLMTFVFALSVTSIYFPQWGGMCC 458
Query: 410 GP 411
GP
Sbjct: 459 GP 460
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|385724802|gb|AFI74368.1| nitrate transporter [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 268/423 (63%), Positives = 338/423 (79%), Gaps = 1/423 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHL+W+S FSCF STF+ PPL+PIIR +LNLT TD+G AG+AS G++F+R+AMG
Sbjct: 40 MRAFHLSWISFFSCFVSTFAAPPLLPIIRDNLNLTATDIGNAGVASVSGAVFARIAMGTA 99
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDL GPR+ASA+L L+TAP V S+ SSP SF+LVRF GF LA FV+ QFWMSSMFSG
Sbjct: 100 CDLFGPRLASASLILLTAPAVYFTSIASSPISFLLVRFFTGFSLATFVSAQFWMSSMFSG 159
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
VVG ANGV+AGW N+G G +QL+MPL+F+ I + TAWR+AF +P+ FQ L+A
Sbjct: 160 PVVGTANGVAAGWGNLGGGATQLIMPLVFSLIRDIGAVKFTAWRVAFFIPALFQTLSAFA 219
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
+LI+GQDLP GNY+ + + + +++KF V ++G+ NYRGWIL LTYG+CFGVELT DN
Sbjct: 220 ILIFGQDLPDGNYQRLQNSGNK-QKDKFSRVFYHGITNYRGWILALTYGYCFGVELTVDN 278
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
IIA+YFYDRF + L AG IAASFG+AN+ SRP GGV+SD M +RFG+RGRLW LWAVQT
Sbjct: 279 IIAEYFYDRFNLKLHTAGIIAASFGLANIVSRPAGGVLSDMMAKRFGMRGRLWALWAVQT 338
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
G+ C++LG+V SL S++VM VFSVFVQAA GLTFGVVPFVS+RSLGVISGMTG GG
Sbjct: 339 LGGVFCIILGQVGSLTASIVVMIVFSVFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGN 398
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
VGAV+TQ++ F GSK+SK+T I++MG+M++ CTLP+ LIYFPQWGGMFCGPS + +
Sbjct: 399 VGAVLTQLIFFKGSKYSKETGITLMGVMIVCCTLPIFLIYFPQWGGMFCGPSSEKIATEE 458
Query: 421 EHY 423
++Y
Sbjct: 459 DYY 461
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121818|ref|XP_002318680.1| predicted protein [Populus trichocarpa] gi|222859353|gb|EEE96900.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 260/423 (61%), Positives = 328/423 (77%), Gaps = 1/423 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHL+W+S F+CF STF+ PPL+PIIR +LNLT TD+G AG+AS G+ F+R+A+G
Sbjct: 40 MRAFHLSWVSFFACFVSTFAAPPLLPIIRDNLNLTATDIGNAGIASVSGAAFARIALGTA 99
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDL GPR+ASA+L L+TAP V S+ SSP SF+LVRF GF LA FV+ QFWMSSMFS
Sbjct: 100 CDLFGPRLASASLILLTAPAVYFTSIASSPTSFLLVRFFTGFSLATFVSTQFWMSSMFSA 159
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
VVG ANGV+AGW N+G G +QL+MPL+F I + V TAWR+AF +P+ FQ L+A
Sbjct: 160 RVVGTANGVAAGWGNLGGGATQLIMPLVFGLIRDIGVLKFTAWRIAFFIPALFQTLSAFA 219
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VLI+G+DLP GN++ +K + ++ K +V ++G+ NYRGWIL LTYG+CFGVELT DN
Sbjct: 220 VLIFGKDLPDGNFRPLQKAGAKPKD-KLSNVFYHGITNYRGWILALTYGYCFGVELTVDN 278
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
IIA+YFYDRF + L AG IAASFG+AN+ SRP GG+ISD + +RFG+RGRLW LW VQT
Sbjct: 279 IIAEYFYDRFDLKLHTAGIIAASFGLANIVSRPAGGLISDAVAKRFGMRGRLWALWIVQT 338
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
G+ C+LLGRV SL S+LVM VFS F QAA GLTFGVVPFVS+RSLG+ISG+TG GG
Sbjct: 339 LGGVFCILLGRVESLGASILVMIVFSFFCQAACGLTFGVVPFVSRRSLGLISGITGGGGN 398
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
+GAV+TQ++ F GSK+SK+T I+ MG+M+I CT P+ +YFPQWGGMFCGPS +
Sbjct: 399 LGAVLTQLIFFKGSKYSKETGITHMGVMIICCTFPICFVYFPQWGGMFCGPSSKTVATEE 458
Query: 421 EHY 423
E+Y
Sbjct: 459 EYY 461
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222118|ref|NP_172754.1| nitrate transporter2.5 [Arabidopsis thaliana] gi|75264143|sp|Q9LPV5.1|NRT25_ARATH RecName: Full=High affinity nitrate transporter 2.5; Short=AtNRT2:5 gi|8698741|gb|AAF78499.1|AC012187_19 Strong similarity to high-affinity nitrate transporter ACH2 from Arabidopsis thaliana gb|AF019749 [Arabidopsis thaliana] gi|332190831|gb|AEE28952.1| nitrate transporter2.5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 253/427 (59%), Positives = 325/427 (76%), Gaps = 3/427 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHL+W F CF STF+ PPL+P+IR +LNLT TD+G AG+AS G++F+R+ MG
Sbjct: 44 MRAFHLSWFQFFCCFVSTFAAPPLLPVIRENLNLTATDIGNAGIASVSGAVFARIVMGTA 103
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDL GPR+ASA L+L TAP V + + SP FI+VRF GF LA FV+ QFWMSSMFSG
Sbjct: 104 CDLFGPRLASAALTLSTAPAVYFTAGIKSPIGFIMVRFFAGFSLATFVSTQFWMSSMFSG 163
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
VVG ANG++AGW N+G G +QL+MP++F+ I ++ TAWR+AF +P FQ L+A
Sbjct: 164 PVVGSANGIAAGWGNLGGGATQLIMPIVFSLIRNMGATKFTAWRIAFFIPGLFQTLSAFA 223
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL++GQDLP G+Y K+ E ++ V+ NG+KNYRGWI L YG+CFGVELT DN
Sbjct: 224 VLLFGQDLPDGDYWAMHKSG-EREKDDVGKVISNGIKNYRGWITALAYGYCFGVELTIDN 282
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
IIA+YF+DRF + LQ AG IAASFG+AN F+RP GG+ SD M RRFG+RGRLW W VQT
Sbjct: 283 IIAEYFFDRFHLKLQTAGIIAASFGLANFFARPGGGIFSDFMSRRFGMRGRLWAWWIVQT 342
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
+ G+LC LG+++SL S++VM VFSVFVQAA GLTFGVVPF+S+RSLGV+SGMTG+GG
Sbjct: 343 SGGVLCACLGQISSLTVSIIVMLVFSVFVQAACGLTFGVVPFISRRSLGVVSGMTGAGGN 402
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
VGAV+TQ++ F GS ++++T I++MG+M I C+LP+ LIYFPQWGGMFCGPS + +
Sbjct: 403 VGAVLTQLIFFKGSTYTRETGITLMGVMSIACSLPICLIYFPQWGGMFCGPS--SKKVTE 460
Query: 421 EHYRLLQ 427
E Y L +
Sbjct: 461 EDYYLAE 467
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573963|ref|XP_002527899.1| nitrate transporter, putative [Ricinus communis] gi|223532674|gb|EEF34456.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/423 (62%), Positives = 333/423 (78%), Gaps = 1/423 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHL+W+S FSCF STF+ PPL+PIIR +LNLT TD+G AG+AS G++F+R+AMG
Sbjct: 36 MRAFHLSWISFFSCFVSTFAAPPLLPIIRDNLNLTATDIGNAGIASVSGAVFARIAMGTA 95
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDL GPR+ASA+L LITAP V S+V+SP SF+LVRF GF L+ FV+ QFWMSSMFS
Sbjct: 96 CDLFGPRLASASLILITAPAVYFTSIVTSPVSFLLVRFFTGFSLSTFVSTQFWMSSMFSA 155
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
VVG ANGVS GW N+G G +QL+MP++F I + +AWR+AF +P+ FQ L+A
Sbjct: 156 PVVGTANGVSGGWGNLGGGATQLIMPIVFGLIRDIGAVKFSAWRIAFFIPALFQTLSAFA 215
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VLI+GQDLP GN+K +K+ E ++K +V + G+KNYRGWIL LTYG+CFGVELT DN
Sbjct: 216 VLIFGQDLPDGNFKRLQKSG-EKPKDKLSNVFYYGVKNYRGWILALTYGYCFGVELTIDN 274
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
I+A+YFYDRF + L AG IAASFG+AN+ SRP GG+ISD + +RFG+RGRLW LW VQT
Sbjct: 275 IVAEYFYDRFNLKLHTAGVIAASFGLANIISRPAGGLISDAVAKRFGMRGRLWALWIVQT 334
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
G+ C++LGRV SL S+LVM FS+F QAA GLTFGVVPFVS+RSLG+ISGMTG GG
Sbjct: 335 LGGVFCIILGRVASLSASILVMIAFSLFCQAACGLTFGVVPFVSRRSLGLISGMTGGGGN 394
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
+GAV+TQ++ F+GSK+SK+T IS+MG+M+I CTLP+ LIYFPQWGGMFCGPS +
Sbjct: 395 LGAVLTQLIFFTGSKYSKETGISLMGMMIICCTLPICLIYFPQWGGMFCGPSSSEIAMEE 454
Query: 421 EHY 423
++Y
Sbjct: 455 DYY 457
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | ||||||
| TAIR|locus:2222652 | 493 | NRT2.7 "high affinity nitrate | 0.971 | 0.841 | 0.626 | 3.5e-139 | |
| TAIR|locus:2010391 | 502 | NRT2.5 "nitrate transporter2.5 | 0.992 | 0.844 | 0.545 | 4.6e-128 | |
| TAIR|locus:2205190 | 530 | NRT2:1 "AT1G08090" [Arabidopsi | 0.988 | 0.796 | 0.501 | 5.2e-113 | |
| TAIR|locus:2205195 | 522 | NRT2.2 "nitrate transporter 2. | 0.985 | 0.806 | 0.505 | 2.2e-112 | |
| TAIR|locus:2159280 | 527 | NRT2.4 "nitrate transporter 2. | 0.988 | 0.800 | 0.498 | 7.6e-112 | |
| TAIR|locus:2075909 | 542 | NRT2.6 "high affinity nitrate | 0.988 | 0.778 | 0.501 | 2.6e-111 | |
| TAIR|locus:2159290 | 539 | NRT2.3 "AT5G60780" [Arabidopsi | 0.988 | 0.782 | 0.491 | 3.4e-109 | |
| ASPGD|ASPL0000060467 | 497 | nrtB [Emericella nidulans (tax | 0.473 | 0.406 | 0.318 | 1.4e-40 | |
| ASPGD|ASPL0000056693 | 507 | crnA [Emericella nidulans (tax | 0.512 | 0.431 | 0.316 | 2.5e-37 | |
| UNIPROTKB|Q47UD4 | 493 | narK "Nitrate permease" [Colwe | 0.552 | 0.478 | 0.282 | 1.5e-25 |
| TAIR|locus:2222652 NRT2.7 "high affinity nitrate transporter 2.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
Identities = 268/428 (62%), Positives = 312/428 (72%)
Query: 2 RAFHLAWXXXXXXXXXXXXIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVC 61
RAFHLAW IPPL+P+I DLNL+ + V AG+ASF GSIFSRLAMGP+C
Sbjct: 40 RAFHLAWLSLFSCFFSTFSIPPLVPVISSDLNLSASTVSAAGIASFAGSIFSRLAMGPLC 99
Query: 62 DLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGC 121
DL+GPR +SA LS +TAP++LSASLVSSP SFILVRF VGF LANFVANQ+WMSSMFSG
Sbjct: 100 DLIGPRTSSAILSFLTAPVILSASLVSSPTSFILVRFFVGFSLANFVANQYWMSSMFSGN 159
Query: 122 VVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMV 181
V+GLANGVSAGWAN+GAG+SQLLMPLI++ I + AWR++F+ P+ FQ TA++V
Sbjct: 160 VIGLANGVSAGWANVGAGISQLLMPLIYSTIAEF-LPRAVAWRVSFVFPAIFQVTTAVLV 218
Query: 182 LIYGQDLPSGNYKEFKKTKTESREEK------------FVHVLFNGLKNYRGWILGLTYG 229
L+YGQD P GN K + K EE+ FV +L GL NYR WIL L YG
Sbjct: 219 LLYGQDTPHGNRKNSNQNKLTIPEEEEVLVVEEDERSSFVEILIGGLGNYRAWILALLYG 278
Query: 230 FCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIR 289
+ +GVELTTDN+IA YFY+RFGVNL+ AGTIAASFG++N+ SRP GG+ISD +G+RFG+R
Sbjct: 279 YSYGVELTTDNVIAGYFYERFGVNLEAAGTIAASFGISNIASRPAGGMISDALGKRFGMR 338
Query: 290 GRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLX 349
GRLWGLW VQ+ AGLLCVLLGRVNSLWGS+LVM VFSVFVQAA GL FGVVPFVS RSL
Sbjct: 339 GRLWGLWIVQSVAGLLCVLLGRVNSLWGSILVMWVFSVFVQAASGLVFGVVPFVSTRSLG 398
Query: 350 XXXXXXXXXXXXXXXXXQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFC 409
Q LLFSG KQ SIS+MGLM V L V+ IYFPQWGGM C
Sbjct: 399 VVAGITGSGGTVGAVVTQFLLFSGDDVRKQRSISLMGLMTFVFALSVTSIYFPQWGGMCC 458
Query: 410 GPSFDPNE 417
GPS E
Sbjct: 459 GPSSSSEE 466
|
|
| TAIR|locus:2010391 NRT2.5 "nitrate transporter2.5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1257 (447.5 bits), Expect = 4.6e-128, P = 4.6e-128
Identities = 233/427 (54%), Positives = 301/427 (70%)
Query: 1 MRAFHLAWXXXXXXXXXXXXIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHL+W PPL+P+IR +LNLT TD+G AG+AS G++F+R+ MG
Sbjct: 44 MRAFHLSWFQFFCCFVSTFAAPPLLPVIRENLNLTATDIGNAGIASVSGAVFARIVMGTA 103
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDL GPR+ASA L+L TAP V + + SP FI+VRF GF LA FV+ QFWMSSMFSG
Sbjct: 104 CDLFGPRLASAALTLSTAPAVYFTAGIKSPIGFIMVRFFAGFSLATFVSTQFWMSSMFSG 163
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
VVG ANG++AGW N+G G +QL+MP++F+ I ++ TAWR+AF +P FQ L+A
Sbjct: 164 PVVGSANGIAAGWGNLGGGATQLIMPIVFSLIRNMGATKFTAWRIAFFIPGLFQTLSAFA 223
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL++GQDLP G+Y K+ E ++ V+ NG+KNYRGWI L YG+CFGVELT DN
Sbjct: 224 VLLFGQDLPDGDYWAMHKSG-EREKDDVGKVISNGIKNYRGWITALAYGYCFGVELTIDN 282
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
IIA+YF+DRF + LQ AG IAASFG+AN F+RP GG+ SD M RRFG+RGRLW W VQT
Sbjct: 283 IIAEYFFDRFHLKLQTAGIIAASFGLANFFARPGGGIFSDFMSRRFGMRGRLWAWWIVQT 342
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLXXXXXXXXXXXX 360
+ G+LC LG+++SL S++VM VFSVFVQAA GLTFGVVPF+S+RSL
Sbjct: 343 SGGVLCACLGQISSLTVSIIVMLVFSVFVQAACGLTFGVVPFISRRSLGVVSGMTGAGGN 402
Query: 361 XXXXXXQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
Q++ F GS ++++T I++MG+M I C+LP+ LIYFPQWGGMFCGPS + +
Sbjct: 403 VGAVLTQLIFFKGSTYTRETGITLMGVMSIACSLPICLIYFPQWGGMFCGPS--SKKVTE 460
Query: 421 EHYRLLQ 427
E Y L +
Sbjct: 461 EDYYLAE 467
|
|
| TAIR|locus:2205190 NRT2:1 "AT1G08090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
Identities = 212/423 (50%), Positives = 274/423 (64%)
Query: 1 MRAFHLAWXXXXXXXXXXXXIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MR FHL+W PL+PIIR +LNLT D+G AG+AS GSIFSRL MG V
Sbjct: 62 MRTFHLSWISFSTCFVSTFAAAPLVPIIRENLNLTKQDIGNAGVASVSGSIFSRLVMGAV 121
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDLLGPR A L +++AP V S S VS FI VRF++GFCLA FV+ Q+WMS+MF+
Sbjct: 122 CDLLGPRYGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFNS 181
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
++GL NG +AGW NMG G++QLLMP+++ I TAWR+AF VP + I+
Sbjct: 182 QIIGLVNGTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGIL 241
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL GQDLP GN +K E ++KF +L+ + NYR WI L YG+ GVEL+TDN
Sbjct: 242 VLNLGQDLPDGNRATLEKAG-EVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDN 300
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
+IA+YF+DRF + L AG IAA FGMAN F+RP GG SD + FG+RGRLW LW +QT
Sbjct: 301 VIAEYFFDRFHLKLHTAGLIAACFGMANFFARPAGGYASDFAAKYFGMRGRLWTLWIIQT 360
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLXXXXXXXXXXXX 360
A GL CV LGR N+L +V+ M +FS+ QAA G TF +VPFVS+R+L
Sbjct: 361 AGGLFCVWLGRANTLVTAVVAMVLFSMGAQAACGATFAIVPFVSRRALGIISGLTGAGGN 420
Query: 361 XXXXXXQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
Q+L FS S F+ + ++ MG+M++ CTLPV+L++FPQWG MF PS DP + +
Sbjct: 421 FGSGLTQLLFFSTSHFTTEQGLTWMGVMIVACTLPVTLVHFPQWGSMFLPPSTDPVKGTE 480
Query: 421 EHY 423
HY
Sbjct: 481 AHY 483
|
|
| TAIR|locus:2205195 NRT2.2 "nitrate transporter 2.2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
Identities = 214/423 (50%), Positives = 276/423 (65%)
Query: 1 MRAFHLAWXXXXXXXXXXXXIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MR FHL+W PLIPIIR +LNLT D+G AG+AS GSIFSRL MG V
Sbjct: 60 MRTFHLSWISFSTCFVSTFAAAPLIPIIRENLNLTKHDIGNAGVASVSGSIFSRLVMGAV 119
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDLLGPR A L +++AP V S S VS FI VRF++GFCLA FV+ Q+WMS+MF+
Sbjct: 120 CDLLGPRYGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFNS 179
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
++GL NG +AGW NMG G++QLLMP+++ I TAWR+AF VP + I+
Sbjct: 180 QIIGLVNGTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGIL 239
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL GQDLP GN +K E ++KF +L+ + NYR WI L YG+ GVEL+TDN
Sbjct: 240 VLTLGQDLPGGNRAAMEKAG-EVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDN 298
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
+IA+YF+DRF + L AG IAA FGMAN F+RP GG SD +RFG+RGRLW LW +QT
Sbjct: 299 VIAEYFFDRFHLKLHTAGIIAACFGMANFFARPAGGWASDIAAKRFGMRGRLWTLWIIQT 358
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLXXXXXXXXXXXX 360
+ GL CV LGR N+L +V+ M +FS+ QAA G TF +VPFVS+R+L
Sbjct: 359 SGGLFCVWLGRANTLVTAVVSMVLFSLGAQAACGATFAIVPFVSRRALGIISGLTGAGGN 418
Query: 361 XXXXXXQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
Q++ FS S+F+ + ++ MG+M++ CTLPV+LI+FPQWG MF PS D + A
Sbjct: 419 FGSGLTQLVFFSTSRFTTEEGLTWMGVMIVACTLPVTLIHFPQWGSMFFPPSNDSVD-AT 477
Query: 421 EHY 423
EHY
Sbjct: 478 EHY 480
|
|
| TAIR|locus:2159280 NRT2.4 "nitrate transporter 2.4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 211/423 (49%), Positives = 275/423 (65%)
Query: 1 MRAFHLAWXXXXXXXXXXXXIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MR FHLAW PL+PIIR +LNLT DVG AG+AS GSIFSRL MG V
Sbjct: 62 MRTFHLAWISFFTCFISTFAAAPLVPIIRDNLNLTRQDVGNAGVASVSGSIFSRLVMGAV 121
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDLLGPR A L +++AP V S S V +I VRF++GFCLA FV+ Q+WMS+MF+G
Sbjct: 122 CDLLGPRYGCAFLVMLSAPTVFSMSFVGGAGGYITVRFMIGFCLATFVSCQYWMSTMFNG 181
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
++GL NG +AGW NMG GV+QLLMP+++ I L + TAWR+AF VP + I+
Sbjct: 182 QIIGLVNGTAAGWGNMGGGVTQLLMPMVYEIIRRLGSTSFTAWRMAFFVPGWMHIIMGIL 241
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL GQDLP GN +K K ++KF VL+ + NYR W+ L YG+ GVELTTDN
Sbjct: 242 VLTLGQDLPDGNRSTLEK-KGAVTKDKFSKVLWYAITNYRTWVFVLLYGYSMGVELTTDN 300
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
+IA+YF+DRF + L AG IAASFGMAN F+RP+GG SD RRFG+RGRLW LW +QT
Sbjct: 301 VIAEYFFDRFHLKLHTAGIIAASFGMANFFARPIGGWASDIAARRFGMRGRLWTLWIIQT 360
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLXXXXXXXXXXXX 360
G C+ LGR +L +V+ M +FS+ QAA G TF ++PF+S+RSL
Sbjct: 361 LGGFFCLWLGRATTLPTAVVFMILFSLGAQAACGATFAIIPFISRRSLGIISGLTGAGGN 420
Query: 361 XXXXXXQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
Q++ FS S FS + ++ MG+M++ CTLPV+L++FPQWG MF + D + +
Sbjct: 421 FGSGLTQLVFFSTSTFSTEQGLTWMGVMIMACTLPVTLVHFPQWGSMFLPSTEDEVKSTE 480
Query: 421 EHY 423
E+Y
Sbjct: 481 EYY 483
|
|
| TAIR|locus:2075909 NRT2.6 "high affinity nitrate transporter 2.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
Identities = 212/423 (50%), Positives = 272/423 (64%)
Query: 1 MRAFHLAWXXXXXXXXXXXXIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHL W PL+P+IR +L+LT TD+G AG+AS G+IFSRLAMG V
Sbjct: 72 MRAFHLGWISFFTCFISTFAAAPLVPVIRDNLDLTKTDIGNAGVASVSGAIFSRLAMGAV 131
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDLLG R +A ++TAP V S S V+ S++ VRF++GFCLA FV+ Q+W S MF+G
Sbjct: 132 CDLLGARYGTAFSLMLTAPAVFSMSFVADAGSYLAVRFMIGFCLATFVSCQYWTSVMFTG 191
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
++GL NG + GW +MG GV+QLLMP++F I TAWR AF +P Q + I+
Sbjct: 192 KIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLTGATPFTAWRFAFFIPGILQIVMGIL 251
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL GQDLP GN +K+ S++ KF V + +KNYR WIL + YGF GVELT +N
Sbjct: 252 VLTLGQDLPDGNLSTLQKSGQVSKD-KFSKVFWFAVKNYRTWILFMLYGFSMGVELTINN 310
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
+I+ YFYDRF + L AG IAASFGMAN F+RP GG SD R FG+RGRLW LW +QT
Sbjct: 311 VISGYFYDRFNLTLHTAGIIAASFGMANFFARPFGGYASDVAARLFGMRGRLWILWILQT 370
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLXXXXXXXXXXXX 360
L C+ LGR +SL ++L M +FS+ QAA G FGV PFVS+RSL
Sbjct: 371 VGALFCIWLGRASSLPIAILAMMLFSMGTQAACGALFGVAPFVSRRSLGLISGLTGAGGN 430
Query: 361 XXXXXXQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
Q+L FS S+FS +S+MG+M +VC+LPV+ I+FPQWG MF PS D + +
Sbjct: 431 FGSGVTQLLFFSSSRFSTAEGLSLMGVMAVVCSLPVAFIHFPQWGSMFLRPSQDGEKSKE 490
Query: 421 EHY 423
EHY
Sbjct: 491 EHY 493
|
|
| TAIR|locus:2159290 NRT2.3 "AT5G60780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 208/423 (49%), Positives = 268/423 (63%)
Query: 1 MRAFHLAWXXXXXXXXXXXXIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHL W PL+PIIR +L+LT TD+G AG+AS G+IFSRLAMG V
Sbjct: 69 MRAFHLGWLSFFTCFISTFAAAPLVPIIRDNLDLTKTDIGNAGVASVSGAIFSRLAMGAV 128
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDLLG R +A ++TAP V S S V P ++ VRF++GFCLA FV+ Q+W S MF+G
Sbjct: 129 CDLLGARYGTAFSLMLTAPTVFSMSFVGGPSGYLGVRFMIGFCLATFVSCQYWTSVMFNG 188
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
++GL NG + GW +MG GV+QLLMP++F I AWR+AF VP Q + I+
Sbjct: 189 KIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLAGATPFMAWRIAFFVPGFLQVVMGIL 248
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL GQDLP GN +K+ S++ KF V + +KNYR WIL + YG G+ELT +N
Sbjct: 249 VLSLGQDLPDGNLSTLQKSGQVSKD-KFSKVFWFAVKNYRTWILFVLYGSSMGIELTINN 307
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
+I+ YFYDRF + LQ AG +AASFGMAN +RP GG SD R FG+RGRLW LW QT
Sbjct: 308 VISGYFYDRFNLKLQTAGIVAASFGMANFIARPFGGYASDVAARVFGMRGRLWTLWIFQT 367
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLXXXXXXXXXXXX 360
L C+ LGR +SL ++L M +FS+ QAA G FGV PFVS+RSL
Sbjct: 368 VGALFCIWLGRASSLPIAILAMMLFSIGTQAACGALFGVAPFVSRRSLGLISGLTGAGGN 427
Query: 361 XXXXXXQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
Q+L FS ++FS +S+MG+M ++CTLPV+ I+FPQWG MF PS D +
Sbjct: 428 FGSGLTQLLFFSSARFSTAEGLSLMGVMAVLCTLPVAFIHFPQWGSMFLRPSTDGERSQE 487
Query: 421 EHY 423
E+Y
Sbjct: 488 EYY 490
|
|
| ASPGD|ASPL0000060467 nrtB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 314 (115.6 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 65/204 (31%), Positives = 104/204 (50%)
Query: 2 RAFHLAWXXXXXXXXXXXXIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
R F +W PPL+ + I+ DL+++ DV + + + LG+ R GP+
Sbjct: 37 RVFFFSWIGFLVAFLSWYAFPPLLSVTIKKDLHMSQDDVANSNIVALLGTFVMRFIAGPL 96
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CD GPR+ L + A A LV++PQ I +RF VG A FV Q W + F
Sbjct: 97 CDRFGPRLVFVGLLICGAVPTAMAGLVTTPQGLIALRFFVGILGATFVPCQVWCTGFFDK 156
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTA-ITSLNVGTHTAWRLAFIVPSTFQALTAI 179
+VG AN ++ G+ N G G++ +MP I+ + + + H AWR+++IVP A+
Sbjct: 157 NIVGTANSLAGGFGNAGGGITYFVMPAIYDSFVHDRGLTPHKAWRVSYIVPFIIIVSIAL 216
Query: 180 MVLIYGQDLPSGNYKEFKKTKTES 203
+L D P+G + + +KT +S
Sbjct: 217 AMLFTCPDTPTGKWADREKTSGQS 240
|
|
| ASPGD|ASPL0000056693 crnA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 322 (118.4 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 71/224 (31%), Positives = 113/224 (50%)
Query: 2 RAFHLAWXXXXXXXXXXXXIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
R F +W PPL+ + IR DL+++ T + + + + L ++ RL GP+
Sbjct: 34 RVFFFSWFGFMLAFLSWYAFPPLLTVTIRDDLDMSQTQIANSNIIALLATLLVRLICGPL 93
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CD GPR+ L L+ + A LV+SPQ I +RF +G FV Q W + F
Sbjct: 94 CDRFGPRLVFIGLLLVGSIPTAMAGLVTSPQGLIALRFFIGILGGTFVPCQVWCTGFFDK 153
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTA-ITSLNVGTHTAWRLAFIVPSTFQALTAI 179
+VG AN ++AG N G G++ +MP IF + I + H AWR+A+IVP A+
Sbjct: 154 SIVGTANSLAAGLGNAGGGITYFVMPAIFDSLIRDQGLPAHKAWRVAYIVPFILIVAAAL 213
Query: 180 MVLIYGQDLPSGNYKE---FKKTKTESREEKFVHVLFNGLKNYR 220
+L D P+G + E + K T++ + + L +G ++ R
Sbjct: 214 GMLFTCDDTPTGKWSERHIWMKEDTQTASKGNIVDLSSGAQSSR 257
|
|
| UNIPROTKB|Q47UD4 narK "Nitrate permease" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 70/248 (28%), Positives = 110/248 (44%)
Query: 1 MRAFHLAWXXXXXXXXXXXXIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
M+ HL+W PL+ +I L L+ +++ T + + +I +R+ +G +
Sbjct: 16 MKILHLSWMAFFITFMVWFNHAPLLAVIADSLGLSSSEIKTLLILNVALTIPARIIIGML 75
Query: 61 CDLLGPRVASATL-SLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFS 119
D GPR+ A L ++ + P + A L + + L RFL+GF A FV +S F
Sbjct: 76 TDKYGPRLTFAVLLAVCSLPCFMFA-LSQNFEQAALARFLLGFIGAGFVIGIRLVSEWFP 134
Query: 120 GCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAI 179
+G A G+ GW N G+ + + +PLI I G AWR A + L +
Sbjct: 135 ANELGTAEGLYGGWGNFGSAAAAMSLPLIALYIGK-TFGVEDAWRYAVALTGLMSLLFSF 193
Query: 180 MVLIYGQDLPSG-NYKEFKKTKTESREEK----FVHVLFNGLKNYRGWILGLTYGFC-FG 233
+ D P G Y FK T+T + E F +L L Y G + LT+ G
Sbjct: 194 IWYANVSDTPKGATY--FKPTQTGAMEVTSVGDFYLLLLMKLPMY-GALALLTWKLSPQG 250
Query: 234 VELTTDNI 241
V L + N+
Sbjct: 251 VSLLSSNM 258
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LYK2 | NRT27_ARATH | No assigned EC number | 0.6919 | 0.9578 | 0.8296 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 427 | |||
| PLN00028 | 476 | PLN00028, PLN00028, nitrate transmembrane transpor | 0.0 | |
| TIGR00886 | 366 | TIGR00886, 2A0108, nitrite extrusion protein (nitr | 2e-73 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 1e-48 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-16 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-13 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 6e-09 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 3e-07 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 1e-04 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 4e-04 |
| >gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Score = 674 bits (1742), Expect = 0.0
Identities = 262/423 (61%), Positives = 323/423 (76%), Gaps = 4/423 (0%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
MRAFHL+W+S F+CF STF+ PL+PIIR +LNLT +D+G AG+AS GSIFSRLAMGPV
Sbjct: 35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPV 94
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
CDL GPR SA L ++TAP V SLVSS FI VRF +GF LA FV+ Q+WMS+MF+G
Sbjct: 95 CDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNG 154
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
+VG ANG++AGW N+G GV+QLLMPL+F I + TAWR+AF VP + I+
Sbjct: 155 KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGIL 214
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
VL GQDLP GNY+E KK+ T ++ F VL G+ NYR WIL LTYG+ FGVELT DN
Sbjct: 215 VLTLGQDLPDGNYRELKKSGTMPKD-SFSKVLRYGVTNYRTWILALTYGYSFGVELTMDN 273
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
IIA+YFYDRFG++L+ AG IAASFG+ NLF+RP GG +SD RRFG+RGRLW LW VQT
Sbjct: 274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQT 333
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
G+ C+ LGR NSL +++VM +FS+FVQAA G TFG+VPFVS+RSLGVISG+TG+GG
Sbjct: 334 LGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGN 393
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEPAD 420
VGAV+TQ+L F+GS +S +T IS+MG+M+I CTLPV+ I+FPQWGGMF GPS D E
Sbjct: 394 VGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIHFPQWGGMFFGPSKDAVE--- 450
Query: 421 EHY 423
E Y
Sbjct: 451 EDY 453
|
Length = 476 |
| >gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Score = 234 bits (598), Expect = 2e-73
Identities = 111/372 (29%), Positives = 171/372 (45%), Gaps = 16/372 (4%)
Query: 2 RAFHLAWLSLFSCFFSTFSIPPLIP-IIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
R +W F F F+ PL +I+ DL L+ +G L R+ +G +
Sbjct: 1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFL 60
Query: 61 CDLLGPR-VASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFS 119
D GPR + +L L+ P + + V S +L+R +G +F + W+S F
Sbjct: 61 VDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFP 120
Query: 120 GCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITS-LNVGTHTAWRLAF-IVPSTFQALT 177
+ G A G++AGW NMG GV+Q +MP I ++ + H AW AF IVP+ L
Sbjct: 121 KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLP 180
Query: 178 AIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNG----LKNYRGWILGLTYGFCFG 233
A+++ G D P G K + ++ WIL L Y FG
Sbjct: 181 ALLIFFVGADTPPGKPAT-GKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFG 239
Query: 234 VELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLW 293
L +I A +F D+FG++ AG A+ G+ +RP+GG ISDR+G R
Sbjct: 240 SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-----RKL 294
Query: 294 GLWAVQTAAGLLCVLLGRVN--SLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVI 351
+ + A G V+LG V+ SL +++ F A G TF +VP + +R+ G +
Sbjct: 295 LMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAV 354
Query: 352 SGMTGSGGTVGA 363
SG+ G+ G +G
Sbjct: 355 SGLVGAIGNLGG 366
|
[Transport and binding proteins, Anions]. Length = 366 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 1e-48
Identities = 94/396 (23%), Positives = 154/396 (38%), Gaps = 21/396 (5%)
Query: 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVG-TAGMASFLGSIFSRLAMGP 59
R L+ L+ F PL I+ D L++ G + +G++ RL G
Sbjct: 13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALL-RLPYGF 71
Query: 60 VCDLLGPRVASATLSLITA-PIVLSASLVSSPQS--FILVRFLVGFCLANFVANQFWMSS 116
+ D G R + L+ P + A V+ P + +++ L+G A+F S
Sbjct: 72 LTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASF 131
Query: 117 MFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQAL 176
F GLA G+ AG N+G V+QL+ PL+ A L AWR + A+
Sbjct: 132 FFPKEKQGLALGI-AGAGNLGVAVAQLVAPLVAVAFGFL------AWRNVAGIYVVALAI 184
Query: 177 TAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVEL 236
A++ + D+P E + + + V N W+L L Y FG +
Sbjct: 185 AAVLAWLGMNDVP-----EHRASVKPQLPAQLKAVF----SNKDTWLLSLLYFATFGGFV 235
Query: 237 TTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLW 296
+ Y +FG++ AG IA F + +RP+GG +SDR+G R G+
Sbjct: 236 GFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMA 295
Query: 297 AVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTG 356
L G S V V VF G F ++P + + G ++G+ G
Sbjct: 296 LAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVG 355
Query: 357 SGGTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVC 392
+ G +G + + + + M L+
Sbjct: 356 AIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYL 391
|
Length = 417 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 3e-16
Identities = 70/362 (19%), Positives = 127/362 (35%), Gaps = 20/362 (5%)
Query: 6 LAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLG 65
L + + + P L + DL ++ T++G A LG ++ G + D G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 66 PRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLA-NFVANQFWMSSMFSGCVVG 124
R L+ A +L SS +++R L G F A ++ F G
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120
Query: 125 LANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIY 184
A G+ + +GA + LL L+ + WR AF++ + L A++ +
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLFG---------WRAAFLILAILALLAAVLAALL 171
Query: 185 GQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQ 244
P + + + + +L + L FG
Sbjct: 172 LPRPPPESKRPKPAEEAPAPLVPAWKLLLR-----DPVLWLLLALLLFGFAFFALLTYLP 226
Query: 245 YFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGL 304
+ + G++ +AG + G+ R + G +SDR+GRR RL + A L
Sbjct: 227 LYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRR----RLLLALLLLILAAL 282
Query: 305 LCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGA 363
LL S ++ + + +V K G SG+ + G++G
Sbjct: 283 GLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGG 342
Query: 364 VV 365
+
Sbjct: 343 AL 344
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 77/392 (19%), Positives = 138/392 (35%), Gaps = 48/392 (12%)
Query: 6 LAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLG 65
L +L F + P +P++ DL L+ + G A LG L G + D G
Sbjct: 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFG 62
Query: 66 PRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVG 124
R L+ A L + SS ++ RFL+G A ++ F G
Sbjct: 63 RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERG 122
Query: 125 LANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIY 184
A G+ + +GA + LL L+ WR F++ + L A+++L
Sbjct: 123 RALGLFSAGFGLGALLGPLLGGLLA---------ESLGWRWLFLILAILGLLLALLLLFL 173
Query: 185 GQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQ 244
+ L +L L + +
Sbjct: 174 LRLL---------------------------------LLLALAFFLLSFGYYGLLTYLPL 200
Query: 245 YFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGL 304
Y + G++ AG + + FG+ + +GG++SDR+GRR + L + L
Sbjct: 201 YLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL---LLIGLLLAALGLL 257
Query: 305 LCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRS--LGVISGMTGSGGTVG 362
L L + L ++L++ F A + R G+ + GG +G
Sbjct: 258 LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALG 317
Query: 363 AVVTQMLLFSGSKFSKQTSISVMGLMMIVCTL 394
++ +LL +G ++ + L+ + L
Sbjct: 318 PLLAGLLLDTGGYGGVFLILAALALLAALLLL 349
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 69/365 (18%), Positives = 129/365 (35%), Gaps = 43/365 (11%)
Query: 26 PIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSAS 85
P+++ DL L+ G A G + + G + D G R A +I +
Sbjct: 18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA 77
Query: 86 LVSSPQSFILVRFLVGFCLANFV-ANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLL 144
+ S ++R L+G A F ++S F A + N G+ ++
Sbjct: 78 FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIF----NSAQGLGGII 133
Query: 145 MPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESR 204
+ I H +W+ AFI+ + ++ L + D K
Sbjct: 134 GGPLVGWIL-----IHFSWQWAFIIEGVLGIIWGVLWLKFIPD------PPQKAKWLTEE 182
Query: 205 EEKFVHV------------------LFNGLKNYRGWILGLTYGFCFGVELTTDNI-IAQY 245
E+ V + LK+ R W L L F + L Y
Sbjct: 183 EKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQ-FLVNIGLGFFLTWFPTY 241
Query: 246 FYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLL 305
G+++ AG +A+ G+ +GG +SD + RR + ++ A +L
Sbjct: 242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG--KSLVFARKTAIIAGLVL 299
Query: 306 CVLL---GRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTV 361
+L+ VN + ++ ++ + F AG + + ++ G+ G+ S G +
Sbjct: 300 SLLMFATNYVNIPYAALALVAL-GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNL 358
Query: 362 GAVVT 366
G +V
Sbjct: 359 GGIVG 363
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 78/369 (21%), Positives = 130/369 (35%), Gaps = 71/369 (19%)
Query: 26 PIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSAS 85
P + D L+ T +G G A + S+ MG + D PR A +++A + +
Sbjct: 53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFG 112
Query: 86 LVSSPQSFILVRFLVGFCLANFVANQFWMSSM-FSGCVVGLAN--------GVSAGWA-- 134
S F ++ L G W M + C + + + W
Sbjct: 113 FSPSLFLFAVLWVLNG-----------WFQGMGWPPCARTITHWFSRKERGTWWSIWNTS 161
Query: 135 -NMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPS--- 190
N+G L + A H WR AF P + A+++L +D P
Sbjct: 162 HNIGGA---LAPLVALLA----FFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG 214
Query: 191 ------------GNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTT 238
Y+E K+ + + + FV + LKN W+L L F + V
Sbjct: 215 LPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYV---LKNKLIWLLALANVFVYVVRYGI 271
Query: 239 DNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRM--GRRFGIRGRLWGLW 296
++ Y + G +L A + F +A L + G +SD++ GRR G
Sbjct: 272 NDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRR--------GPM 323
Query: 297 AVQTAAGLLCVLLGRVNSLWGS-VLVMCVFSVFVQAAGGLTFG--------VVPFVSKRS 347
A+ + L+ + GS +L + G L +G FV K++
Sbjct: 324 ALIFMLLITASLVLYWLAPNGSYLLDAILLF----IIGFLIYGPQMLIGLAAAEFVPKKA 379
Query: 348 LGVISGMTG 356
G +G G
Sbjct: 380 AGTATGFVG 388
|
Length = 448 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 69/382 (18%), Positives = 131/382 (34%), Gaps = 49/382 (12%)
Query: 8 WLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPR 67
++ + + + +P + ++ L+ TD+G + + S+ MG V D PR
Sbjct: 1 FIGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR 60
Query: 68 VASATLSLITAPIVLSASLVSSPQSFILVRFLVG-FCLANFVANQFWMSSMFSGCVVGLA 126
V ++ A + L +S + L G F + ++ FS G
Sbjct: 61 VFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTW 120
Query: 127 NGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQ 186
N+G G L+P + + +W FIVP + +++ + +
Sbjct: 121 VSFWNCSHNVGGG----LLPPLVLFGIAE----LYSWHWVFIVPGIIAIIVSLICFLLLR 172
Query: 187 DLP---------------SGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFC 231
D P E K+ + ++ +VL N + W + L Y F
Sbjct: 173 DSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVL----WYISLGYVFV 228
Query: 232 FGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRM--GRRFGIR 289
+ V + Y G + + A + + L + G +SD++ GRR +
Sbjct: 229 YVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL- 287
Query: 290 GRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFG--------VVP 341
AV A ++ LL + + L+ + A G L +G
Sbjct: 288 -------AVFFMALIIVSLLVYWLNPAANPLMDLICLF---ALGFLVYGPQMLIGVIASE 337
Query: 342 FVSKRSLGVISGMTGSGGTVGA 363
K++ G +G G +G
Sbjct: 338 LAPKKAAGTAAGFVGFFAYLGG 359
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 64/358 (17%), Positives = 119/358 (33%), Gaps = 43/358 (12%)
Query: 2 RAFHLAWLSLFSCFFS--TFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGP 59
R +++ ++ CF S ++ L P + + T V +G S G
Sbjct: 1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGL 60
Query: 60 VCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFS 119
+ D GPR + ++ ++ S + L L +
Sbjct: 61 LADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLAS------AGVGIAYGIALN 114
Query: 120 GCV------VGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTF 173
V GLA+G+ G +G+ + L PLI + I V AFI
Sbjct: 115 TAVKWFPDKRGLASGIIIGGYGLGSFI---LSPLITSVINLEGVPA------AFIYMGII 165
Query: 174 QALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGF-CF 232
L ++ P + KT E + + ++ L+ + W+L L++
Sbjct: 166 FLLVIVLGAFLIGYPP----GQLIKTNIEVSVKDYT--VWEMLRTPQFWVLYLSFFLNAV 219
Query: 233 GVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRL 292
L + G++ + + N RP G +SD++GR+ +
Sbjct: 220 SGLLLIGLYKP--YGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMS--- 274
Query: 293 WGLWAVQTAAGLLCVLLG-RVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLG 349
+ +A G+ +L +N + V VF + G T + P + G
Sbjct: 275 --IVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTW-----GGTISLFPSLVSDIFG 325
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 100.0 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 100.0 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.98 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.98 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.97 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.97 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.97 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.97 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.96 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.96 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.96 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.96 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.95 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.95 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.94 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.94 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.94 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.93 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.92 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.92 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.92 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.92 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.92 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.92 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.91 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.91 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.9 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.89 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.88 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.87 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.84 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.82 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.81 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.78 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.76 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.71 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.7 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.65 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.62 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.59 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.55 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.54 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.54 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.53 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.53 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.51 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.51 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.49 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.49 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.49 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.49 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.49 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.48 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.47 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.47 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.47 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.47 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.45 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.45 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.44 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.44 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.44 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.43 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.43 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.43 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.41 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.41 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.4 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.39 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.39 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.39 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.38 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.37 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.37 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.37 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.37 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.37 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.36 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.36 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.35 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.35 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.34 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.33 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.33 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.33 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.32 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.32 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.32 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.32 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.32 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.31 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.31 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.3 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.3 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.3 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.3 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.29 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.28 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 99.28 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.27 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.27 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.25 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.25 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.24 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.23 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.22 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.2 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.2 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.19 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.19 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.18 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.18 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.17 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.14 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.12 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.12 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.12 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.11 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.11 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.1 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.1 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.1 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.1 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.1 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.09 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.09 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.07 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.06 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.06 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.05 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.04 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.03 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.03 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.03 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.99 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.99 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.98 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.98 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.97 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.96 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.93 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.93 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.92 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.92 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.91 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.89 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.86 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.83 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.82 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.82 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.81 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.81 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.78 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.77 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.77 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.75 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.74 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.73 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.71 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.63 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.51 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.51 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.5 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.47 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.46 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.45 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.43 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.43 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.4 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.39 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.38 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 98.37 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.32 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.3 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.27 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.21 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.18 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.18 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.07 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.04 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.91 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.91 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.8 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.71 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.66 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.6 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.58 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.58 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.54 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.28 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.93 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.9 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.78 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.76 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.75 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.29 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.08 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.99 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.98 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.98 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.95 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.89 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.0 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 94.03 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.77 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 92.97 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 91.82 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 91.75 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.23 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 90.79 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 90.49 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 90.36 | |
| PF02990 | 521 | EMP70: Endomembrane protein 70; InterPro: IPR00424 | 85.7 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 83.27 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 81.33 |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=342.39 Aligned_cols=406 Identities=62% Similarity=1.137 Sum_probs=321.5
Q ss_pred hhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHH
Q 014301 3 AFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVL 82 (427)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (427)
.+...|...+..........+..|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~ 116 (476)
T PLN00028 37 AFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVF 116 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 45667777888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHhhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccc
Q 014301 83 SASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTA 162 (427)
Q Consensus 83 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~ 162 (427)
++++++|++.+++.|++.|++.+...+...+++|++|+++|++++++.....++|..+++.+.+.+...+.+.+..+..+
T Consensus 117 ~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g 196 (476)
T PLN00028 117 CMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA 196 (476)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence 99999999999999999999988765566778999999999999999988888999888888877766543311112358
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhh
Q 014301 163 WRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNII 242 (427)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (427)
||+.|++.+++.++..+..++++++.|+++.++.+++.+.++ ++..+.+++.++++++|...+.++..........+++
T Consensus 197 Wr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (476)
T PLN00028 197 WRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPK-DSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNII 275 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCcccc-ccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999998888777777777666543211111111111 2234556777889999988887777777777788899
Q ss_pred cchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 014301 243 AQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVM 322 (427)
Q Consensus 243 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (427)
|.|+.+.+|+++.+++.+.+...++.++++++.|+++||++||+..+.+.........+.++.+......++.+...+.+
T Consensus 276 p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~ 355 (476)
T PLN00028 276 AEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVM 355 (476)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 99998888999999999999999999999999999999999876544444454455555544444444455555555666
Q ss_pred HHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHhhccc
Q 014301 323 CVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFP 402 (427)
Q Consensus 323 ~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (427)
++++++.+...+..+++.+++.++++|++.|+.+..+++|+.++|.+....+..+|+.+|...+++.+++.++.++.+.+
T Consensus 356 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~~ 435 (476)
T PLN00028 356 ILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIHFP 435 (476)
T ss_pred HHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHheecc
Confidence 67777777777777777778888899999999999999999999987643445679999999999999988888887766
Q ss_pred cCCCccc
Q 014301 403 QWGGMFC 409 (427)
Q Consensus 403 ~~~~~~~ 409 (427)
.+++++.
T Consensus 436 ~~~~~~~ 442 (476)
T PLN00028 436 QWGGMFF 442 (476)
T ss_pred chhhhhc
Confidence 6555433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=307.04 Aligned_cols=388 Identities=18% Similarity=0.205 Sum_probs=316.9
Q ss_pred hHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHH
Q 014301 4 FHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLS 83 (427)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (427)
+...++.+....+.+-.++...|.+.||.++|.+|.|.+.+.+.+.|.++.++.|.++||.++|+.+..++++.++..++
T Consensus 31 f~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil 110 (448)
T COG2271 31 FLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNIL 110 (448)
T ss_pred HHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHH
Confidence 44555666666677778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccc
Q 014301 84 ASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTA 162 (427)
Q Consensus 84 ~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~ 162 (427)
++++++.+.+.+..++.|..+|.- +++...+.+|++++|||+..++++...|+|..+.+.+..+ ..+.. +.+
T Consensus 111 ~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l--a~~~~-----~~~ 183 (448)
T COG2271 111 FGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL--AFFAF-----HGG 183 (448)
T ss_pred HhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH--HHHHh-----ccc
Confidence 999999999999999999999975 9999999999999999999999999999999888777632 22222 679
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCc---------ccccc-cchhhhh-hh-hHHHHHhhhcCchHHHHHHHHHH
Q 014301 163 WRLAFIVPSTFQALTAIMVLIYGQDLPSGNY---------KEFKK-TKTESRE-EK-FVHVLFNGLKNYRGWILGLTYGF 230 (427)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 230 (427)
||..|++.++++++..+..++..+|+|++.. ++.+. +++++++ -+ .....+.+++||..|.+++.+.+
T Consensus 184 w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vf 263 (448)
T COG2271 184 WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVF 263 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHH
Confidence 9999999999999999999999898887531 11111 1111111 11 22345678999999999999999
Q ss_pred HHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHh
Q 014301 231 CFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLG 310 (427)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (427)
....-++...|.|.|+.|..|+|..+++...+.+-.++++|.+++|+++||+.+.+ |.....+.++...+++....
T Consensus 264 vYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr----R~p~~~i~~~~i~~~~~~~w 339 (448)
T COG2271 264 VYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR----RGPMALIFMLLITASLVLYW 339 (448)
T ss_pred HHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc----cchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999985322 22234444444444444444
Q ss_pred hcc--chHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhh-hhHHHHHHH-hhcccccchhHHHHH
Q 014301 311 RVN--SLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTV-GAVVTQMLL-FSGSKFSKQTSISVM 385 (427)
Q Consensus 311 ~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~-g~~~~~~~~-~~~~~~~~~~~~~~~ 385 (427)
..+ +.+...++++..|+.....+-..-..+.|+ |++..|++.|+...++++ |.+.+.... ...|..+|...|...
T Consensus 340 ~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~ 419 (448)
T COG2271 340 LAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVL 419 (448)
T ss_pred cCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHH
Confidence 444 457777777778887766663333334465 778899999999999998 888887777 666779999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 014301 386 GLMMIVCTLPVSLIYFP 402 (427)
Q Consensus 386 ~~~~~~~~~~~~~~~~~ 402 (427)
.+.++++.++++...+.
T Consensus 420 ~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 420 SIAALLAILLLLPVWNA 436 (448)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99998888887776653
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=291.14 Aligned_cols=367 Identities=16% Similarity=0.119 Sum_probs=302.7
Q ss_pred HHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc
Q 014301 7 AWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL 86 (427)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 86 (427)
..+..|......+....++|++++|+|.|..+.|++.|.|.++..+++++...+.||+.||+.++..+.++.++.+++++
T Consensus 18 La~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al 97 (394)
T COG2814 18 LALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97 (394)
T ss_pred HHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhH
Q 014301 87 VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRL 165 (427)
Q Consensus 87 ~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~ 165 (427)
++||+.++++|++.|+..|.+ ........+..||++|++++++...+..++..+|..++.++++ ..|||.
T Consensus 98 Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~---------~~GWR~ 168 (394)
T COG2814 98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ---------LFGWRA 168 (394)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH---------HhhHHH
Confidence 999999999999999999988 7777788999999999999999988888777777777777766 779999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcch
Q 014301 166 AFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQY 245 (427)
Q Consensus 166 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (427)
.|+..+..+++..+..+...| |++.+++. +...+...+.+|+|+.+...+...+.....+...+|+.++
T Consensus 169 ~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~---------~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~ 237 (394)
T COG2814 169 TFLAIAVLALLALLLLWKLLP--PSEISGSL---------PGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPF 237 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CccCCCCC---------CcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHH
Confidence 999999999998887776655 12111111 1112233567899999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHH
Q 014301 246 FYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV-NSLWGSVLVMCV 324 (427)
Q Consensus 246 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 324 (427)
+++..|+|.+..++....++++..+|..++|++.|| +.|+ .+.....+..+.+..+.+. ++.+...+..++
T Consensus 238 L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~-------~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~ 309 (394)
T COG2814 238 LESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR-------ALIAALLLLALALLALTFTGASPALALALLFL 309 (394)
T ss_pred HHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh-------HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999 6654 4444444444444444443 455566666666
Q ss_pred HHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHHhhcc
Q 014301 325 FSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSLIYF 401 (427)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (427)
+++..............+..||.++.+.+++....|+|..+|..+. ...+++++....+..+...+++..+.....+
T Consensus 310 wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 310 WGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776666555555555566679999999999999999999999998 6667799999888888888888877766554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=313.56 Aligned_cols=383 Identities=16% Similarity=0.120 Sum_probs=282.8
Q ss_pred HHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc
Q 014301 7 AWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL 86 (427)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 86 (427)
..+.+++.+.++..+++..|.+.+|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.+++++..+..+.
T Consensus 34 ~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 113 (467)
T PRK09556 34 VFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGA 113 (467)
T ss_pred HHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHH
Confidence 34445555667888999999999999999999999999999999999999999999999999998888887777766554
Q ss_pred -----hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcc
Q 014301 87 -----VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTH 160 (427)
Q Consensus 87 -----~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~ 160 (427)
++|++.+++.|+++|++.+.. +...++++||+|+++|++++++.....++|..+++.+...+..... .
T Consensus 114 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~------~ 187 (467)
T PRK09556 114 SLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF------D 187 (467)
T ss_pred HHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc------c
Confidence 689999999999999999876 8888899999999999999999999888988888777654443210 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccc-----c----cch-h-hhhhhhHHH-HHhhhcCchHHHHHHHH
Q 014301 161 TAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFK-----K----TKT-E-SREEKFVHV-LFNGLKNYRGWILGLTY 228 (427)
Q Consensus 161 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~-~-~~~~~~~~~-~~~~~~~~~~~~~~~~~ 228 (427)
.+||..|.+.+++.++..+..+++.++.|++.+...+ + +++ . +++.+..+. .++.+|||.+|...+..
T Consensus 188 ~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (467)
T PRK09556 188 GHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFAN 267 (467)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHH
Confidence 2699999998888887777777666665543211000 0 000 0 000111222 23478999999999988
Q ss_pred HHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHH
Q 014301 229 GFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVL 308 (427)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (427)
++......+...|.|.|+++.+|+++.+++.......++.+++.++.|+++||+++|+. .... ............
T Consensus 268 ~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~----~~~~-~~~~~~~~~~~~ 342 (467)
T PRK09556 268 IFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA----LVAC-IALALIIFTLGV 342 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch----HHHH-HHHHHHHHHHHH
Confidence 88888888888999999999899999999999999999999999999999999998861 1111 111111111222
Q ss_pred HhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhh-hhHHHHHHH-hhcc-----------
Q 014301 309 LGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTV-GAVVTQMLL-FSGS----------- 374 (427)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~-g~~~~~~~~-~~~~----------- 374 (427)
....++.+...+..++.|++.............| .|++.+|++.|+.+..+++ |..++|.+. ...+
T Consensus 343 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~ 422 (467)
T PRK09556 343 YQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGY 422 (467)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccc
Confidence 2233444444455555564433322222233344 4888999999999999996 778999888 5545
Q ss_pred -cccchhHHHHHHHHHHHHHHHHHhhc
Q 014301 375 -KFSKQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 375 -~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
..+|+..|.+..++.+++.+..+.+.
T Consensus 423 ~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 423 TLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999888888888776666554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=298.33 Aligned_cols=356 Identities=14% Similarity=0.052 Sum_probs=266.5
Q ss_pred hhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 014301 16 FSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFIL 95 (427)
Q Consensus 16 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (427)
.....+++.+|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......+|++.+++
T Consensus 5 ~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (368)
T TIGR00903 5 AIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLA 84 (368)
T ss_pred HHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34556889999999999999999999999999999999999999999999999877665555554443334479999999
Q ss_pred HHHHHhhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHH
Q 014301 96 VRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQA 175 (427)
Q Consensus 96 ~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~ 175 (427)
.|+++|++.+...+....++|++|+|+|++++++.+.+.++|..+++.+++.+.+ +.|||+.|++.+++++
T Consensus 85 ~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---------~~gWr~~f~~~~~l~~ 155 (368)
T TIGR00903 85 CQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---------AGGLQLLIIPIAAVAA 155 (368)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------ccchHHHHHHHHHHHH
Confidence 9999999998666666677999999999999999999999999888888777765 6799999999888888
Q ss_pred HHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHH
Q 014301 176 LTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQ 255 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~ 255 (427)
+..++.++..||.|++++++. + . ++..+.+++++|||.+|...+..++.....+++.+|+|.|+++ .|++..
T Consensus 156 ~~~~~~~~~lp~~p~~~~~~~--~--~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~ 227 (368)
T TIGR00903 156 AGIILVLAALPALPFQAAEGF--G--F---KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI 227 (368)
T ss_pred HHHHHHHHHcCCCCCCCCCCc--c--h---HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH
Confidence 777766666555454322111 0 0 1112356788999999999999999999999999999999976 478865
Q ss_pred HHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhh
Q 014301 256 VAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGL 335 (427)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 335 (427)
.+.......+.+.++ .+++.||..||+.. + ........+.++.+.......+....+....+.+++.....+.
T Consensus 228 -~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r--~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (368)
T TIGR00903 228 -AGDAVALAILAGLIG---VAVIPDRVARAGLR--S-IYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAI 300 (368)
T ss_pred -HHHHHHHHHHHHHHH---HHHhhHHhhhhhhH--H-HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHH
Confidence 566666666655555 47888888765311 1 1121122222333333344444444445556666767677777
Q ss_pred hhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHH
Q 014301 336 TFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVS 397 (427)
Q Consensus 336 ~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (427)
.+++.+|. |++.||++.|+.+..+++++.++|.+. .... +....|...++..+++.+...
T Consensus 301 ~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 301 IMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 77888865 888999999999999999999999888 3332 666778777777777776654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=287.47 Aligned_cols=375 Identities=23% Similarity=0.319 Sum_probs=326.0
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIV 81 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (427)
|+++..++.+.+++...++++++.+.+.+|+|+|+.|.+++.++..+...+..++.|.+.||+|.|++...+.++..+-.
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~ 93 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPC 93 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchhh---HHHHHHHHHHHhhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCC
Q 014301 82 LSASLVSS---PQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVG 158 (427)
Q Consensus 82 ~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~ 158 (427)
+..+++.+ ++++++.+.+.|++.+.+......+++|+|||++|.++|+.. ..|+|..+...++|.+..
T Consensus 94 ~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~-------- 164 (417)
T COG2223 94 LGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV-------- 164 (417)
T ss_pred HHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH--------
Confidence 99988754 459999999999999999999999999999999999999999 999999999999999987
Q ss_pred cccc---hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhH-HHHHhhhcCchHHHHHHHHHHHHHH
Q 014301 159 THTA---WRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFV-HVLFNGLKNYRGWILGLTYGFCFGV 234 (427)
Q Consensus 159 ~~~~---wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (427)
..+ ||.+..+..+..++..+..++..+|.|+.+... ++.. ..++...+||+.|.+.+.++..++.
T Consensus 165 -~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~----------~~~~~~~~~~v~~~~~~W~lsllY~~tFG~ 233 (417)
T COG2223 165 -AFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV----------KPQLPAQLKAVFSNKDTWLLSLLYFATFGG 233 (417)
T ss_pred -HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc----------cccchhHHHHHhcCcchHHHHHHHHHHHHH
Confidence 446 999999999988888888899988877753221 1111 5667788899999999999999999
Q ss_pred HhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc--
Q 014301 235 ELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV-- 312 (427)
Q Consensus 235 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 312 (427)
+.++..++|.|+++++|.++.+++.......+.+.+.+..+|+++||+|.++ ..........++.......
T Consensus 234 Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r-------v~~~~f~~~~~~~~~l~~~~~ 306 (417)
T COG2223 234 FVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR-------VTLAVFVGMALAAALLSLFLT 306 (417)
T ss_pred HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchh-------HHHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999999999999999999987 4444444444444433332
Q ss_pred -----cchHHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH--hhcccccchhHHHHH
Q 014301 313 -----NSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL--FSGSKFSKQTSISVM 385 (427)
Q Consensus 313 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~ 385 (427)
.+...........++..+......+.+++.+.+++.|.+.|+....+.+|+..-|... ..+.+..+...|...
T Consensus 307 ~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~ 386 (417)
T COG2223 307 GFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLL 386 (417)
T ss_pred ccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHH
Confidence 3456666667778888888899999999988888999999999999999999999888 556666799999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 014301 386 GLMMIVCTLPVSLIYFPQ 403 (427)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~ 403 (427)
..+.+++.+.....+.++
T Consensus 387 ~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 387 LAFYLVALVLTWALYARR 404 (417)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 998888888777666543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=301.50 Aligned_cols=352 Identities=14% Similarity=0.067 Sum_probs=279.9
Q ss_pred cccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 014301 20 SIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFL 99 (427)
Q Consensus 20 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 99 (427)
...+.+|.+.+|+|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.+++++|++.+++.|++
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ 106 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG 106 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHH
Q 014301 100 VGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTA 178 (427)
Q Consensus 100 ~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~ 178 (427)
+|++.+.. +...+++.|++|+++|++++++.....++|..+++.+++.+.+ +.|||+.|++.++++++..
T Consensus 107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~---------~~gw~~~f~~~~~~~~l~~ 177 (390)
T PRK03545 107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ---------YLGWRTTFLAIGGGALITL 177 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH---------HhcHHHHHHHHHHHHHHHH
Confidence 99999876 7788899999999999999999988888888877777766654 6799999999998887766
Q ss_pred HHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHH
Q 014301 179 IMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAG 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~ 258 (427)
+..+...|+.|++++ + ..+..++.+|||+++......++.........++.+.++++..|.|+.+++
T Consensus 178 ~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~ 244 (390)
T PRK03545 178 LLLIKLLPLLPSEHS------------G-SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFAT 244 (390)
T ss_pred HHHHHhCCCCCCCCc------------c-hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHH
Confidence 655554433222110 0 112345678888887766666555666666677888888888899999999
Q ss_pred HHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhh
Q 014301 259 TIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFG 338 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 338 (427)
...+...++.++++++.+++.||.++|. ...................++.+..++..++.|++.....+....
T Consensus 245 ~~~~~~~~~~~~g~~~~g~l~dr~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 317 (390)
T PRK03545 245 LLLLLFGGAGIIGSVLFSRLGNRHPSGF-------LLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQV 317 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhH-------HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHH
Confidence 9999999999999999999999998764 222222222222223334455666666777788877666565666
Q ss_pred cccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHHhhc
Q 014301 339 VVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 339 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
...+..++.+++++|..+...++|..+||.+. ...+..+++..+...+++.+++.+......
T Consensus 318 ~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 318 KVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 66666678899999999999999999999998 778889999999888888877777665544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=299.79 Aligned_cols=381 Identities=17% Similarity=0.156 Sum_probs=277.9
Q ss_pred HHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch
Q 014301 8 WLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV 87 (427)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 87 (427)
.+..+...++...+++..|.+.+++|.|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 108 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS 108 (434)
T ss_pred HHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 34444445556678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHH
Q 014301 88 SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLA 166 (427)
Q Consensus 88 ~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~ 166 (427)
+|++.+++.|++.|++.|.. +...+++.|++|+++|++++++.+...++|..+++.+.+.+.+ ..+||+.
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~gw~~~ 179 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL---------HYGWRYG 179 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------cccHHHH
Confidence 99999999999999999876 7788899999999999999999999888888888777766654 6799999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCc------ccccc-c--chhh-hhhhhHHHHH-hhhcCchHHHHHHHHHHHHHHH
Q 014301 167 FIVPSTFQALTAIMVLIYGQDLPSGNY------KEFKK-T--KTES-REEKFVHVLF-NGLKNYRGWILGLTYGFCFGVE 235 (427)
Q Consensus 167 f~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~--~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 235 (427)
|++.+++.++..+..++..+++|++.. .+.+. + ++++ ++.+.++.++ ..+++|.+|...+..++.....
T Consensus 180 f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (434)
T PRK11663 180 MMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVR 259 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 999888777665544444344333210 00000 0 0000 0012222232 3678899998888777777777
Q ss_pred hhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHH-HHHHHHHHHHHHHHhhccc
Q 014301 236 LTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGL-WAVQTAAGLLCVLLGRVNS 314 (427)
Q Consensus 236 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 314 (427)
....+|+|.|+.+.+|+++.+++...+...++..+++++.|++.||+.+++. +..... ..+.....+...... ..+
T Consensus 260 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r--~~~~~~~~~~~~~~~~~~~~~~-~~~ 336 (434)
T PRK11663 260 AAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNR--GPMNLIFAAGILLSVGSLWLMP-FAS 336 (434)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCc--cHHHHHHHHHHHHHHHHHHHcc-ccc
Confidence 8888899999988889999999999999999999999999999999843320 011111 112222222222222 223
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHH
Q 014301 315 LWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVC 392 (427)
Q Consensus 315 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 392 (427)
........+..|++.............| .+++++|++.|+.+...++|.+++|.+. ...+..+++..|...+++.+++
T Consensus 337 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~ 416 (434)
T PRK11663 337 YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGIS 416 (434)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2222223333333322222222333445 4678899999999999999999999999 7777788999998888888777
Q ss_pred HHHHHhhc
Q 014301 393 TLPVSLIY 400 (427)
Q Consensus 393 ~~~~~~~~ 400 (427)
++..+...
T Consensus 417 ~~~~~~~~ 424 (434)
T PRK11663 417 ALLLLPFL 424 (434)
T ss_pred HHHHHHHH
Confidence 66554433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=297.83 Aligned_cols=376 Identities=15% Similarity=0.127 Sum_probs=276.0
Q ss_pred hHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHH
Q 014301 4 FHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLS 83 (427)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (427)
....++.++++..++...+...|.+++|+|+|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++++++.++
T Consensus 10 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 89 (412)
T TIGR02332 10 IIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTA 89 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 44566677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccc
Q 014301 84 ASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTA 162 (427)
Q Consensus 84 ~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~ 162 (427)
+++++|++.+++.|+++|++.+.. +....++.|++|+++|++++++++...++|..+++.+++.+... ....+..|
T Consensus 90 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~g 166 (412)
T TIGR02332 90 TMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL---DGLMALKG 166 (412)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCccc
Confidence 999999999999999999999987 77778889999999999999999888888887777776655421 00011469
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcc--cccccc------------h-hh----h-hhhhHHHHHhhhcCchHH
Q 014301 163 WRLAFIVPSTFQALTAIMVLIYGQDLPSGNYK--EFKKTK------------T-ES----R-EEKFVHVLFNGLKNYRGW 222 (427)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------~-~~----~-~~~~~~~~~~~~~~~~~~ 222 (427)
||+.|++.++++++..++.+++.+|.|++.+. +.+++. + .+ + +...++.+++. ++|.+|
T Consensus 167 wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 245 (412)
T TIGR02332 167 WQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREI-FTPAIM 245 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHh-cChHHH
Confidence 99999999988887766666665665643210 000000 0 00 0 00112233443 357888
Q ss_pred HHHHHHHHHHHHHhhhhhhhcchhhhc-cCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHH
Q 014301 223 ILGLTYGFCFGVELTTDNIIAQYFYDR-FGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTA 301 (427)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 301 (427)
...+.+++.....+.+.+|+|.++++. .|.++.+++.......++..++.++.|+++||+++|+ .. .......
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~----~~--~~~~~~~ 319 (412)
T TIGR02332 246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK----HH--TALPYLF 319 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH----HH--HHHHHHH
Confidence 888888888888888999999999873 4778889999999999999999999999999999775 11 1112222
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhccc-ccc
Q 014301 302 AGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSK-FSK 378 (427)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~-~~~ 378 (427)
..+.+......++.........+.+++.....+.......+ .|+++|++++|+.+..+++|++++|.+. ...+. ++|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~ 399 (412)
T TIGR02332 320 AAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSF 399 (412)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCC
Confidence 22222222222232222222233333333333333344444 5788999999999999999999999988 54554 468
Q ss_pred hhHHHHHHHHH
Q 014301 379 QTSISVMGLMM 389 (427)
Q Consensus 379 ~~~~~~~~~~~ 389 (427)
+.++...+++.
T Consensus 400 ~~~~~~~~~~~ 410 (412)
T TIGR02332 400 NSGLWFVAALL 410 (412)
T ss_pred chhHHHHHHHH
Confidence 88887666543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=291.89 Aligned_cols=349 Identities=13% Similarity=0.054 Sum_probs=266.9
Q ss_pred ccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 014301 19 FSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRF 98 (427)
Q Consensus 19 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 98 (427)
...++.+|.+++|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+.+++++|++.++++|+
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 55889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcc-cchhHHHHHHHHHHHH
Q 014301 99 LVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTH-TAWRLAFIVPSTFQAL 176 (427)
Q Consensus 99 l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~-~~wr~~f~~~~~~~~~ 176 (427)
++|++.+.. +.....+.|++| ++|+++++++..+.+.|..+|+.+++.+.+ + .+||+.+.+.++..++
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~---------~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQ---------HSETWYQTLAWWALPAVV 175 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHH
Confidence 999999976 777788899986 789999999988888888888888777664 3 3899998877666554
Q ss_pred HHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHH
Q 014301 177 TAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQV 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~ 256 (427)
..+..+...+++|++++++ + .+ .++.+++|+.|...+..++....+....++.|.|+++ +|.++.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~--------~-~~----~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ 241 (393)
T PRK09705 176 ALFAWWWQSAREVASSHKT--------T-TT----PVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQY 241 (393)
T ss_pred HHHHHHHHhcCCCccccCC--------C-cC----CcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhh
Confidence 4433333333323221110 0 11 1234567888887777777777888888999999987 6999999
Q ss_pred HHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHhhhhhhh
Q 014301 257 AGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR-VNSLWGSVLVMCVFSVFVQAAGGL 335 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~ 335 (427)
++...+...++.++++++.+++.||.++|+ ....+..+..+....... ..+.... ...+.+++.+...+.
T Consensus 242 ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~ 312 (393)
T PRK09705 242 SGSLLALMTLGQAAGALLMPAMARHQDRRK-------LLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPL 312 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccchH-------HHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHH
Confidence 999999999999999999999999999886 333333333333333222 2222222 234556777766666
Q ss_pred hhhccc-cc-CcCcceeeeehhcchhhhhhHHHHHHH-hhccc-ccchhHHHHHHHHHHHHHHHHHhhc
Q 014301 336 TFGVVP-FV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSK-FSKQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 336 ~~~~~~-~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
...... +. +++++|+.+|+.+..++++..++|.+. ...+. +++...+....++.+........+.
T Consensus 313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 654444 44 356799999999999999999999998 44444 4577878777777766655554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=289.29 Aligned_cols=370 Identities=14% Similarity=0.101 Sum_probs=281.4
Q ss_pred HHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHh
Q 014301 6 LAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSAS 85 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 85 (427)
...+..++........++.+|++.+++|+|+++.+++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.++++
T Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~ 90 (394)
T PRK03699 11 ISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLM 90 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchh
Q 014301 86 LVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWR 164 (427)
Q Consensus 86 ~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr 164 (427)
+++|++.+++.|+++|++.+.. +...+.+.|++|+++|+++++..+....+|..+++.+.+.+.. + ..+||
T Consensus 91 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~-----~~gw~ 162 (394)
T PRK03699 91 FSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA---R-----SIEWY 162 (394)
T ss_pred HcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-----cccHH
Confidence 9999999999999999999866 7788889999999999999998877777777666655544332 1 46999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcc
Q 014301 165 LAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQ 244 (427)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (427)
+.|.+.+++.++..++.++ ++.|+.++++.++ + + +. .++ ..++.++...+..++....++....|.|.
T Consensus 163 ~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~-~---~-~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 230 (394)
T PRK03699 163 WVYACIGLVYVAIFILTLF--SEFPALGKHAPKA-D---K-PV----AKE-KWGIGVLFLAIAALLYILAQLTFISWVPE 230 (394)
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCccccccCccc-c---C-cc----ccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877766554433 2223221111110 0 0 10 011 12456677777777767777788899999
Q ss_pred hhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 014301 245 YFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCV 324 (427)
Q Consensus 245 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (427)
|+++.+|+|+.+++...+...++..+++++.+++.||+++|+ .......+..+.+......++.+...+..++
T Consensus 231 ~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (394)
T PRK03699 231 YAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR-------ILTVLAGLALVLMYLFVNTDDPSHLLYAILG 303 (394)
T ss_pred HHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 998888999999999999999999999999999999999986 3333333444444444445555555556677
Q ss_pred HHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHHhhccc
Q 014301 325 FSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSLIYFP 402 (427)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (427)
.|++.+..++...+...+..++++++..|......++|..++|.+. ...+..+++..+...+++.+++.+..+...+.
T Consensus 304 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (394)
T PRK03699 304 LGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGFV 382 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7887777777777666665556667778888888899999999998 66677788888887777777776655544443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=288.99 Aligned_cols=372 Identities=17% Similarity=0.165 Sum_probs=275.9
Q ss_pred HHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHh
Q 014301 6 LAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSAS 85 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 85 (427)
..+...+++.++....++..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 98 (406)
T PRK11551 19 LCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATA 98 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 34455666677778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchh
Q 014301 86 LVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWR 164 (427)
Q Consensus 86 ~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr 164 (427)
+++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..+++.++..+.+ ..+||
T Consensus 99 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~ 169 (406)
T PRK11551 99 QAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG---------DAAWR 169 (406)
T ss_pred HhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------ccCHH
Confidence 9999999999999999998876 7888899999999999999999988877777766666544432 67999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcc
Q 014301 165 LAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQ 244 (427)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (427)
+.|++.++..++..+......+|.|+..+++.++ +++ ++..+...+..++++.+...+..+......+....+.|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 245 (406)
T PRK11551 170 HIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG---KQR-APVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPS 245 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc---hhh-hhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776666555555444433322111111 111 111111111112233444444455555566677788999
Q ss_pred hhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 014301 245 YFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCV 324 (427)
Q Consensus 245 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (427)
++++ .|+++.+.+...+...++.++++++.|++.||+++|+ ..........+.+......++.+...+..++
T Consensus 246 ~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK11551 246 LLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR-------VVLLIYAGILASLAALAAAPSFAGMLLAGFA 317 (406)
T ss_pred HHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9877 5999999999999999999999999999999999886 3333333334444444445566656666667
Q ss_pred HHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhccc-ccchhHHHHHHHHHHHHHHHHHh
Q 014301 325 FSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSK-FSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
.+++.+...+...++.++ .|+++||++.|+.+...++|..++|.+. ...+. .++...+.....+.+++.++.+.
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777774 5889999999999999999999999998 44443 45555555555555555444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=297.69 Aligned_cols=383 Identities=11% Similarity=0.085 Sum_probs=285.7
Q ss_pred HHHHHHHhHhhhccccchhhhhhh----------------------hcCCCcchhhHHHHHHHHHHHHhhcccccccccc
Q 014301 7 AWLSLFSCFFSTFSIPPLIPIIRH----------------------DLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLL 64 (427)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~ 64 (427)
.++...+++.++...+...+.+.+ |+++++.+.|++.+.+.+++.+++++.|+++||+
T Consensus 24 ~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~ 103 (465)
T TIGR00894 24 LHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY 103 (465)
T ss_pred HHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh
Confidence 444555667777778888887776 7899999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhch--hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHH
Q 014301 65 GPRVASATLSLITAPIVLSASLV--SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVS 141 (427)
Q Consensus 65 Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 141 (427)
|||+++..+.++++++.+++.++ ++++.+++.|+++|++.+.. +....++.|++|+++|++++++...+.++|..++
T Consensus 104 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~ 183 (465)
T TIGR00894 104 VFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIF 183 (465)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887554 56889999999999999987 8888999999999999999999988888888777
Q ss_pred HHHHHHHHHHHhhccCCcc-cchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccch-------hhh-hhhhHHHH
Q 014301 142 QLLMPLIFTAITSLNVGTH-TAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKT-------ESR-EEKFVHVL 212 (427)
Q Consensus 142 ~~~~~~l~~~l~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~ 212 (427)
+.+++.+.. . .+||+.|++.++..++..+..+.+++|.|++++++.+++.+ +++ +++.+..+
T Consensus 184 ~~l~~~l~~---------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 254 (465)
T TIGR00894 184 LPISGWLCE---------SWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPI 254 (465)
T ss_pred HHHHHHHHh---------ccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCH
Confidence 776665543 5 49999999999988888777777776666543221111100 000 01112246
Q ss_pred HhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhH
Q 014301 213 FNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRL 292 (427)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 292 (427)
++.+++|.+|...+..+......+.+.+|+|.|+++.+|++..+.++..+...++..++.++.|+++||.++|+......
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~ 334 (465)
T TIGR00894 255 KAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTA 334 (465)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 77889999999999998888888999999999999999999999999999999999999999999999987664322221
Q ss_pred H---HHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHH
Q 014301 293 W---GLWAVQTAAGLLCVLLGR-VNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQM 368 (427)
Q Consensus 293 ~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 368 (427)
. .......+..+....... ..+....+..+.+.+.+.+...+.......+..++.+|.+.|+.+..+.+++.++|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~ 414 (465)
T TIGR00894 335 ARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIAST 414 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111111122222222 233444444455555555545555555555777779999999999999999999999
Q ss_pred HH-hhccc---ccchhHHHHHHHHHHHHHHHHHh
Q 014301 369 LL-FSGSK---FSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 369 ~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
+. ...+. .+|...|.+.++..+++.+....
T Consensus 415 l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 415 LAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 88 43332 34777777777777776655443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=294.98 Aligned_cols=387 Identities=13% Similarity=0.065 Sum_probs=260.0
Q ss_pred hHHHHHHHHHhHhhhccccchhhhhhhhcCCCcch-hhH-----HHHHHHHHHHHhhccccccccccCCchHHHHHHHHH
Q 014301 4 FHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTD-VGT-----AGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLIT 77 (427)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~g~-----~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 77 (427)
....++..+++.++...++...|.+.++++.+.++ .++ +.++..+++.++++++|+++||+|||+++..+++++
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~ 97 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIM 97 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34556788889999999999999999999754432 222 247788999999999999999999999999999999
Q ss_pred HHHHHHHhchhhHHH--------HHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHH
Q 014301 78 APIVLSASLVSSPQS--------FILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLI 148 (427)
Q Consensus 78 ~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 148 (427)
+++++++++++|+++ ++++|+++|++.|+. ++...+++|++|+++|+++.++...+..+|..+|+.+...+
T Consensus 98 ~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 98 SISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999875 899999999999987 88889999999999999999999888888887777766665
Q ss_pred HHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcc--cccccchhhhhhhhHHHHHhhhc-CchHHH-H
Q 014301 149 FTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYK--EFKKTKTESREEKFVHVLFNGLK-NYRGWI-L 224 (427)
Q Consensus 149 ~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~ 224 (427)
...+.+.. ...+|||+.|++.+++.++..++ ....+|.|+..++ +.++++++..+++....+++.++ +++.+. .
T Consensus 178 ~~~~~~~~-~~~~gWR~~f~i~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (490)
T PRK10642 178 STIVGEAN-FLDWGWRIPFFIALPLGIIGLYL-RHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTC 255 (490)
T ss_pred HHhcCHHH-hcCccHHHHHHHHHHHHHHHHHH-HHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHHHHH
Confidence 54332110 11579999999977655543333 2333333331110 00000000000000111222332 222222 2
Q ss_pred HHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHH---
Q 014301 225 GLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTA--- 301 (427)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~--- 301 (427)
....++....++....+.|.|+++.+|++..+.+.......++..++.++.|+++||+|||+ .+..+...
T Consensus 256 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-------~~~~~~~~~~~ 328 (490)
T PRK10642 256 IGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP-------FVILGSVALFV 328 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHH
Confidence 22333445667778889999998888999888888878888889999999999999999986 22222221
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcc-cccc
Q 014301 302 AGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGS-KFSK 378 (427)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~-~~~~ 378 (427)
....+......++.....+..++.+++.+...+....+.++ .|++.||++.|..+.....++.++|.+. ...+ ..++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~ 408 (490)
T PRK10642 329 LAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNL 408 (490)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 11211222223344455555566666666555555566664 5888999999987666777778888887 4333 2344
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 014301 379 QTSISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~ 399 (427)
...+....+..+++.+..++.
T Consensus 409 ~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 409 MMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 545545555555555554444
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=291.95 Aligned_cols=377 Identities=18% Similarity=0.203 Sum_probs=287.7
Q ss_pred HHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhH
Q 014301 11 LFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSP 90 (427)
Q Consensus 11 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 90 (427)
.++.+++...++...|.+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++..+.++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence 35667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHH
Q 014301 91 QSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIV 169 (427)
Q Consensus 91 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~ 169 (427)
+.+++.|++.|++.+.. +....++.|++|+++|++.+++.+...++|..+++.+++.+.. ..+||+.|++
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~~~~~~~~~ 153 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI---------HFSWQWAFII 153 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---------hCCchHHHHH
Confidence 99999999999999876 8888999999999999999999999999888888777766554 6799999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcccccccc------------hhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhh
Q 014301 170 PSTFQALTAIMVLIYGQDLPSGNYKEFKKTK------------TESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELT 237 (427)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (427)
.++..++..+..++..+++|++++...++++ +++++++.++..++.+|+|+++...+..++.......
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (399)
T TIGR00893 154 EGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGF 233 (399)
T ss_pred HHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHH
Confidence 9888877776666555554432211110000 0001012234466778899999998888888888888
Q ss_pred hhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhH-HHHHHHHHHHHHHHHHHhhccchH
Q 014301 238 TDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRL-WGLWAVQTAAGLLCVLLGRVNSLW 316 (427)
Q Consensus 238 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 316 (427)
...+.|.|+++.+|.++.+.+...+...+..+++.++.+++.||++||+...... ...........+........++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (399)
T TIGR00893 234 FLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPY 313 (399)
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 9999999999888999999999999999999999999999999999985110000 011111111111111111122333
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhccccc-chhHHHHHHHHHHHHH
Q 014301 317 GSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFS-KQTSISVMGLMMIVCT 393 (427)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 393 (427)
....... .+.+.....+...++..| .|+++||++.|+.+...++|..++|.+. ...+..+ ++..+...+++.+++.
T Consensus 314 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 392 (399)
T TIGR00893 314 AALALVA-LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGA 392 (399)
T ss_pred HHHHHHH-HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHH
Confidence 3333333 333333356777777775 4888999999999999999999999998 6666666 8888888877777666
Q ss_pred HHHH
Q 014301 394 LPVS 397 (427)
Q Consensus 394 ~~~~ 397 (427)
+...
T Consensus 393 ~~~~ 396 (399)
T TIGR00893 393 LSYL 396 (399)
T ss_pred HHHH
Confidence 5543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=284.21 Aligned_cols=360 Identities=14% Similarity=0.056 Sum_probs=272.7
Q ss_pred HHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhh
Q 014301 10 SLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSS 89 (427)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 89 (427)
....+....+..++..|.+.+++|+|+++.|++.+++.+++.+++++.|+++||+|||+++..+..+.+++.+.+++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~ 90 (377)
T TIGR00890 11 IMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADS 90 (377)
T ss_pred HHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHH
Confidence 33334444667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHH
Q 014301 90 PQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFI 168 (427)
Q Consensus 90 ~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~ 168 (427)
++.++++|++.|++.+.. +.....+.|++| |+|+++.++.....++|..+++.+...+.+ ..+||+.|+
T Consensus 91 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~f~ 160 (377)
T TIGR00890 91 LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN---------LEGVPAAFI 160 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh---------cccHHHHHH
Confidence 999999999999999875 667777888886 679999999988877777654433333322 569999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhh
Q 014301 169 VPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYD 248 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (427)
+.++..++..+..++..+++|++++++.++. ++.....++.+|||+++...+..++..........+.+.|.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (377)
T TIGR00890 161 YMGIIFLLVIVLGAFLIGYPPGQLIKTNIEV------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS 234 (377)
T ss_pred HHHHHHHHHHHHHHHheecCchhccccCccc------chhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999888877776666554333221111110 1111234567788888887777666655555566667777644
Q ss_pred ccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHH
Q 014301 249 RFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNS--LWGSVLVMCVFS 326 (427)
Q Consensus 249 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g 326 (427)
+|.++.+.+...+...++..+++++.|++.||++||+ ....+..+..+........++ .........+.+
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 235 -LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK-------TMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 6899989999999999999999999999999999986 344444444444444433332 222334445566
Q ss_pred HHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHH
Q 014301 327 VFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCT 393 (427)
Q Consensus 327 ~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 393 (427)
++.+...+....+.+| .|+++|+++.|+.+...++|..++|.+. ...+..+++..+...+++.+++.
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 6666666666666665 4888999999999999999999999988 66777888888887777666543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=285.87 Aligned_cols=373 Identities=15% Similarity=0.136 Sum_probs=252.6
Q ss_pred HHHHHHHhHhhhccccchhhhhhhhcC---CCcchhhHHH---HHHHHHHHHhhccccccccccCCchHHHHHHHHHHHH
Q 014301 7 AWLSLFSCFFSTFSIPPLIPIIRHDLN---LTDTDVGTAG---MASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPI 80 (427)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~g~~~---s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (427)
.++..+++.++...++...|.+.++++ .+..+.+... +...++..++++++|+++||+|||+++..+..+++++
T Consensus 27 ~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~ 106 (432)
T PRK10406 27 ASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 345577888999999999999999985 4555444444 4445555599999999999999999999999999999
Q ss_pred HHHHhchhhHH--------HHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 014301 81 VLSASLVSSPQ--------SFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTA 151 (427)
Q Consensus 81 ~~~~~~~~~~~--------~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 151 (427)
++++++++|+. .+++.|+++|++.|.. +...++++|++|+++|+++.++.+.....|..+++.+...+...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~ 186 (432)
T PRK10406 107 SLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQT 186 (432)
T ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998874 5899999999999987 88889999999999999999988777777777776665555433
Q ss_pred HhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHH
Q 014301 152 ITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFC 231 (427)
Q Consensus 152 l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (427)
+.+.. .+.+|||++|++.++++++..... +..||+++.+.++ ++ + ...+++.+|+|+.+...+...+.
T Consensus 187 ~~~~~-~~~~gWr~~F~i~~~~~ll~~~~~----~~~~e~~~~~~~~--~~---~--~~~~~~l~~~~~~~~~~~~~~~~ 254 (432)
T PRK10406 187 LEDAE-LREWGWRIPFALGAVLAVVALWLR----RQLDETSQQETRA--LK---E--AGSLKGLWRNRRAFIMVLGFTAA 254 (432)
T ss_pred CCHHH-HhccchHHHHHHHHHHHHHHHHHH----hcCCCCchHHHhh--hc---c--cccHHHHHhhHHHHHHHHHHHHH
Confidence 21100 014699999999887766543221 2222222111110 00 0 12345667788887766655443
Q ss_pred -HHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHH---H
Q 014301 232 -FGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLC---V 307 (427)
Q Consensus 232 -~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 307 (427)
....+...+|+|.|+++.+|.+..+.+...+...+...++..+.|+++||++||+ .......+..+.. .
T Consensus 255 ~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~-------~~~~~~~~~~~~~~~~~ 327 (432)
T PRK10406 255 GSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT-------SMLCFGSLAALFTVPIL 327 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-------HHHHHHHHHHHHHHHHH
Confidence 5667778899999998888999999988888888888888889999999999986 2222222211111 1
Q ss_pred H-HhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhh-hhHHHHHHH-hhcccccchhHHH
Q 014301 308 L-LGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTV-GAVVTQMLL-FSGSKFSKQTSIS 383 (427)
Q Consensus 308 ~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~-g~~~~~~~~-~~~~~~~~~~~~~ 383 (427)
. ....++.........+..+..+...+....+.+|. |++.|+++.|+.+..++. .+...|.+. .....+.+...+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~ 407 (432)
T PRK10406 328 SALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFW 407 (432)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHH
Confidence 1 11122333222222222233333344455666665 788999999999987764 344566665 4444444555666
Q ss_pred HHHHHHHHHHHHHHh
Q 014301 384 VMGLMMIVCTLPVSL 398 (427)
Q Consensus 384 ~~~~~~~~~~~~~~~ 398 (427)
..++..+++.+..+.
T Consensus 408 ~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 408 YVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665555444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=280.05 Aligned_cols=378 Identities=19% Similarity=0.202 Sum_probs=292.2
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhhhh-hcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRH-DLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPI 80 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (427)
|+++..++.+++++...++++++.+.+.+ |+|+|++|.+++.+++.+++.+..++.|++.||+|.|+++..+.+++++.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 56788899999999999999999999876 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHhch-----hhHHHHHHHHHHHhhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHH--Hh
Q 014301 81 VLSASLV-----SSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTA--IT 153 (427)
Q Consensus 81 ~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--l~ 153 (427)
++..+++ +|++.+++.|++.|++.+.+++....+++|+|+++||+++|+.....++|..+++.+.|.+... +.
T Consensus 114 ~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~ 193 (462)
T PRK15034 114 CVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFA 193 (462)
T ss_pred HHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999987 8999999999999998555588999999999999999999999888899999998888876532 11
Q ss_pred hcc-------CCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHH
Q 014301 154 SLN-------VGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGL 226 (427)
Q Consensus 154 ~~~-------~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (427)
..+ ..+..+||.+.++..++.++..++.++..++.|++ +...++.++.+|||+.|.+.+
T Consensus 194 ~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~--------------~~~~~~~~~vlk~~~~Wllsl 259 (462)
T PRK15034 194 FLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS--------------RASIADQLPVLQRLHLWLLSL 259 (462)
T ss_pred HhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc--------------ccCHHHHHHHhCCCchhHHHH
Confidence 100 01244699999998888887777777775443321 111234456889999999999
Q ss_pred HHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 014301 227 TYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLC 306 (427)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (427)
.+++.+..+.++..++|.|+++.+ +.........+..+...+.++++|+++||+|+++ ....+.....+..
T Consensus 260 ly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~-------vl~~~~i~~~i~~ 330 (462)
T PRK15034 260 LYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR-------VTLINFIFMAIFS 330 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH-------HHHHHHHHHHHHH
Confidence 999999999999999999998755 3333333334456778888999999999999987 3333333222222
Q ss_pred ----HHHhhc--cchHHHHHHHHHHHHHhhhhhhhhhhccccc-Cc---------------------Ccceeeeehhcch
Q 014301 307 ----VLLGRV--NSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SK---------------------RSLGVISGMTGSG 358 (427)
Q Consensus 307 ----~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~---------------------~~~g~~~g~~~~~ 358 (427)
...+.. .+.+...+......++.+..+...+-++++. |+ ++.|.+.|+....
T Consensus 331 ~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~ 410 (462)
T PRK15034 331 ALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAI 410 (462)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHH
Confidence 111111 2345555555555566666666666666533 32 1567889999999
Q ss_pred hhhhhHHHHHHH--hhcccccchhHHHHHHHHHHHHHHHHHhhccc
Q 014301 359 GTVGAVVTQMLL--FSGSKFSKQTSISVMGLMMIVCTLPVSLIYFP 402 (427)
Q Consensus 359 ~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (427)
+.+|+++.|.++ ..+..+++...+..+.+..++|..+.+..+.|
T Consensus 411 G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 411 GAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999877 66666889999999999999998888776654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=278.16 Aligned_cols=366 Identities=13% Similarity=0.055 Sum_probs=267.1
Q ss_pred hhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHH
Q 014301 3 AFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVL 82 (427)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (427)
.+.......+..........+.+|.+++|+|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 34555666777778888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCccc
Q 014301 83 SASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHT 161 (427)
Q Consensus 83 ~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~ 161 (427)
++++++|++.+++.|++.|++.+.. +.....+.|++++++|++++++......+|..+++.++..+.+ ..
T Consensus 84 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---------~~ 154 (382)
T PRK10091 84 MFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ---------EF 154 (382)
T ss_pred HHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh---------hc
Confidence 9999999999999999999999976 6667778999999999999999877777777666666555543 67
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhh
Q 014301 162 AWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNI 241 (427)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (427)
+||+.|++.++..++..+..++..|+.+++++ . +. + +. .+.+|+++.|...+...+.........++
T Consensus 155 gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~----~---~~--~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (382)
T PRK10091 155 SWRYTFLLIAVFNIAVLASIYFWVPDIRDEAK----G---GL--R---EQ-FHFLRSPAPWLIFAATMFGNAGVFAWFSY 221 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc----c---CH--H---HH-HHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877766555444333222110 0 00 1 11 23456777776665554444444455567
Q ss_pred hcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHh-hccchHHHHH
Q 014301 242 IAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLG-RVNSLWGSVL 320 (427)
Q Consensus 242 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 320 (427)
++.++.+.+|.++.+.+.+.+...++.++++++.+++.||+++|+ .......+..+...... ..++.+...+
T Consensus 222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 294 (382)
T PRK10091 222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR-------IAAVTDFIIVLALLMLFFFGGMKTASLI 294 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh-------HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 778888778999999999999999999999999999999999886 34444444444333332 2334444444
Q ss_pred HHHHHHHHhhhhhhhhh-hccccc-CcCcceeeeehhcchhhhhhHHHHHHH-h-hcccccchhHHHHHHHHHHHHHHHH
Q 014301 321 VMCVFSVFVQAAGGLTF-GVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-F-SGSKFSKQTSISVMGLMMIVCTLPV 396 (427)
Q Consensus 321 ~~~~~g~~~~~~~~~~~-~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (427)
..++.+.+.....+... ....+. +++.++.+ ..+...++|..+||.+. . .+...+|+..+...++..++.....
T Consensus 295 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 295 FAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 44555555444443333 233333 34445443 34667789999999998 4 4445789888888776666655554
Q ss_pred Hhh
Q 014301 397 SLI 399 (427)
Q Consensus 397 ~~~ 399 (427)
...
T Consensus 373 ~~~ 375 (382)
T PRK10091 373 LLY 375 (382)
T ss_pred HHH
Confidence 443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=278.19 Aligned_cols=343 Identities=16% Similarity=0.064 Sum_probs=262.7
Q ss_pred HhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHH
Q 014301 13 SCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQS 92 (427)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (427)
+..++...+.+.+|.+.+++|.|+.+.++..+.+.+++.+++++.|+++||+||||++..+..+.+++.+....+++++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (406)
T PRK15402 24 ATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQ 103 (406)
T ss_pred HHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 33445666788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHH
Q 014301 93 FILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPS 171 (427)
Q Consensus 93 l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~ 171 (427)
+++.|+++|++.+.. +.....+.|++|+++|.+..++......+|..+++.++..+.+ +.+||+.|++.+
T Consensus 104 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---------~~~w~~~~~~~~ 174 (406)
T PRK15402 104 FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH---------VLPWRGMFVLFA 174 (406)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------ccCccHHHHHHH
Confidence 999999999998876 7778888999999999999988877666676666666555543 679999999988
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccC
Q 014301 172 TFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFG 251 (427)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 251 (427)
+..++..+..++..|+.++++++ +. +. ++..+.+++.++||+++...+..++..........+.|.++.+.+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~---~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g 247 (406)
T PRK15402 175 ALAALSFFGLWRAMPETAGRVGE---KL---SL-KELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQ 247 (406)
T ss_pred HHHHHHHHHHHHhCCCCCccccc---cc---cH-HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Confidence 88877666555443332221111 10 01 2344556788899999888777766666666666778888888889
Q ss_pred CcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHH
Q 014301 252 VNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR-----VNSLWGSVLVMCVFS 326 (427)
Q Consensus 252 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g 326 (427)
.++.+.+.......++.+++.++.+++.||+++|+ ....+..+..+....... ..+.+......++.+
T Consensus 248 ~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 320 (406)
T PRK15402 248 LSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS-------LIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYA 320 (406)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 99999998888778888999999999999999886 333333333222222211 234455566777788
Q ss_pred HHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccc
Q 014301 327 VFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSK 378 (427)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~ 378 (427)
++.+...+.........+++++|++.+..+....++..+|+.+. ...+..+.
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 373 (406)
T PRK15402 321 FGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGN 373 (406)
T ss_pred HHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCch
Confidence 88887776665555444568899999999999999999999888 44444443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=285.19 Aligned_cols=371 Identities=18% Similarity=0.178 Sum_probs=262.4
Q ss_pred cccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchh----hHHHHHH
Q 014301 20 SIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVS----SPQSFIL 95 (427)
Q Consensus 20 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~ 95 (427)
..++..|.+.++ |.|+.+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.+.+++++ +++.+++
T Consensus 47 ~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 125 (452)
T PRK11273 47 NFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 125 (452)
T ss_pred HHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHH
Confidence 356788999888 99999999999999999999999999999999999999999999999998887753 7888999
Q ss_pred HHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHH-HHHHHHHHHHHHHhhccCCcccchhHHHHHHHHH
Q 014301 96 VRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAG-VSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTF 173 (427)
Q Consensus 96 ~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~ 173 (427)
.|++.|++.+.. ++....+.|++|+++|++++++.+...++|.. .+++.+..+.. ..+||+.|++.+++
T Consensus 126 ~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---------~~gw~~~f~i~~~~ 196 (452)
T PRK11273 126 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW---------FNDWHAALYMPAFA 196 (452)
T ss_pred HHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---------hccHHHHHHHHHHH
Confidence 999999998876 66777889999999999999999888777753 33333222211 34999999999888
Q ss_pred HHHHHHHHHHHcCCCCCCCc----cccccc------chhhhhhhhHHHH-HhhhcCchHHHHHHHHHHHHHHHhhhhhhh
Q 014301 174 QALTAIMVLIYGQDLPSGNY----KEFKKT------KTESREEKFVHVL-FNGLKNYRGWILGLTYGFCFGVELTTDNII 242 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (427)
.++..++.+++.+|.|++.. ++.+++ ++++++.+.++.+ +..+|||.+|...+..++.....+....++
T Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 276 (452)
T PRK11273 197 AILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS 276 (452)
T ss_pred HHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766555555444443210 000000 0000101122222 346789999998888888888888888999
Q ss_pred cchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHH--HHhhccchHHHHH
Q 014301 243 AQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCV--LLGRVNSLWGSVL 320 (427)
Q Consensus 243 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 320 (427)
|.|+++..|++..+++.......++.+++.++.|+++||+++++. .. .......+..+... ......+.+...+
T Consensus 277 P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~---~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 352 (452)
T PRK11273 277 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR---GA-TGVFFMTLVTIATIVYWLNPAGNPTVDMA 352 (452)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc---ch-HHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence 999998889999999998888889999999999999999954321 11 11111111122111 1222223333334
Q ss_pred HHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHH-HHHHH-hhcccccchhHHHHHHHHHHHHHHHHH
Q 014301 321 VMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVV-TQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVS 397 (427)
Q Consensus 321 ~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (427)
.....+.+............. ..|++.+|+++|+.+...++|+.+ +|.+. ...+..+++..|...+++++++++...
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 353 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 444444433222222233344 458889999999999998888765 68777 666777899999888888887777766
Q ss_pred hhccccC
Q 014301 398 LIYFPQW 404 (427)
Q Consensus 398 ~~~~~~~ 404 (427)
...+.++
T Consensus 433 ~~~~~~~ 439 (452)
T PRK11273 433 VVMIGEK 439 (452)
T ss_pred HHhcccc
Confidence 5555433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=284.38 Aligned_cols=358 Identities=17% Similarity=0.185 Sum_probs=254.0
Q ss_pred hHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHH
Q 014301 4 FHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLS 83 (427)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (427)
....++..+.+.++.....+..|.+++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 99 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGL 99 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 34556677777788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccc
Q 014301 84 ASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTA 162 (427)
Q Consensus 84 ~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~ 162 (427)
++++++++.++++|+++|++.+.. +....++.|++|+++|+++.++...+..+|..+++.+.+.+.+ ..+
T Consensus 100 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~---------~~~ 170 (426)
T PRK12307 100 SGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE---------AYG 170 (426)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc---------cCC
Confidence 999999999999999999999876 7888889999999999999999987777777666655554433 679
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcc---cccccch--hhhhhhhHHHHHhhhcCchHHHHHHHHH---HHHHH
Q 014301 163 WRLAFIVPSTFQALTAIMVLIYGQDLPSGNYK---EFKKTKT--ESREEKFVHVLFNGLKNYRGWILGLTYG---FCFGV 234 (427)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 234 (427)
||+.|++..+..++.. ++.++.|++++. +.+++.+ ++..+......++.+++|.++....... .....
T Consensus 171 w~~~f~i~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (426)
T PRK12307 171 WRAAFFVGLLPVLLVI----YIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGA 246 (426)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 9999988544333221 222222222111 0000000 0000111234567778887765443322 22333
Q ss_pred HhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 014301 235 ELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNS 314 (427)
Q Consensus 235 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (427)
.+....++|.|+++. |.++.+.+...+...++.++++++.+++.||++||+ ....+..+..+........++
T Consensus 247 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 318 (426)
T PRK12307 247 NWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK-------TFSIGLLMSFLFIFPLFRIPQ 318 (426)
T ss_pred HHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHHHHHHcc
Confidence 344667889998775 999999999999999999999999999999999986 333333333333332222221
Q ss_pred hHHHHHHHHHHHHHh--hhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHH
Q 014301 315 LWGSVLVMCVFSVFV--QAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSI 382 (427)
Q Consensus 315 ~~~~~~~~~~~g~~~--~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~ 382 (427)
........++++.+. ....+.......| .|++.||+++|+.+...++++.++|.+. ...+..++....
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~ 390 (426)
T PRK12307 319 DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAAL 390 (426)
T ss_pred ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHH
Confidence 111122223333322 2223334455554 5888899999999999999999999998 666777765443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=283.89 Aligned_cols=372 Identities=13% Similarity=0.084 Sum_probs=284.2
Q ss_pred hhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHH
Q 014301 3 AFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVL 82 (427)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (427)
++...+...+++.+......+..|.+.++++.|+.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~ 97 (417)
T PRK10489 18 AFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFI 97 (417)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHH
Confidence 44555666778888888889999999999999999999999999999999999999999999999999998888777666
Q ss_pred HHhc-----hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhcc
Q 014301 83 SASL-----VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLN 156 (427)
Q Consensus 83 ~~~~-----~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~ 156 (427)
..+. .++++.+++.|++.|++.+.. ++..+.+.|++|+++|+++.++.....++|..+|+.+++.+.+
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~------ 171 (417)
T PRK10489 98 GLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA------ 171 (417)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH------
Confidence 5442 568899999999999998866 7778889999999999999999988888888888877776665
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHh
Q 014301 157 VGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVEL 236 (427)
Q Consensus 157 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (427)
..+||+.|++.++..++..+..+.+++++++++++ +++. ++..+.++..+++|.++...+...+.. ...
T Consensus 172 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 240 (417)
T PRK10489 172 ---AGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPR------EHPL-RSLLAGFRFLLASPVVGGIALLGGLLT-MAS 240 (417)
T ss_pred ---HHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc------ccch-HHHHHHHHHHHcChHHHHHHHHHHHHH-HHH
Confidence 56899999988877776665555554432221111 0111 333445566778888766555444332 345
Q ss_pred hhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchH
Q 014301 237 TTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLW 316 (427)
Q Consensus 237 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (427)
....++|.|+++.+|.++.+.+++.+...++.+++.++.+++.||.++++ .+..+..+..+....+...++.+
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~ 313 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL-------LMLLSTLGSFLAVGLFGLMPMWI 313 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch-------HHHHHHHHHHHHHHHHHccchHH
Confidence 66778999998878999999999999999999999999999999865554 33444444445555555556666
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHH
Q 014301 317 GSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTL 394 (427)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 394 (427)
...+..++.|++.+...+...++..+ .|++.||+++|+.+...++|..++|.+. ...+..++...+...+.+.++..+
T Consensus 314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 393 (417)
T PRK10489 314 LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGV 393 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 66677777888877777777777775 5778899999999999999999999999 777777877777766666555444
Q ss_pred HHHh
Q 014301 395 PVSL 398 (427)
Q Consensus 395 ~~~~ 398 (427)
+...
T Consensus 394 ~~~~ 397 (417)
T PRK10489 394 LLLL 397 (417)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=276.34 Aligned_cols=347 Identities=13% Similarity=0.086 Sum_probs=263.3
Q ss_pred hccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 014301 18 TFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVR 97 (427)
Q Consensus 18 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 97 (427)
.+...+.+|++.+++|.|+++.++..+.+.++..+++++.|+++||+|||+++..+..+.+++.+++++++|++.+++.|
T Consensus 36 ~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 115 (394)
T PRK10213 36 EFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGR 115 (394)
T ss_pred HHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHH
Q 014301 98 FLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQAL 176 (427)
Q Consensus 98 ~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~ 176 (427)
+++|++.+.. +...+++.|++|+|+|++++++.....++|..+++.+++.+.+ ..+||+.|++.++++++
T Consensus 116 ~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~---------~~gw~~~f~~~~~l~~~ 186 (394)
T PRK10213 116 ACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE---------LIGWRNVFNAAAVMGVL 186 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hcCHHHHHHHHHHHHHH
Confidence 9999999987 8888889999999999999999999888888888888877765 67999999998877666
Q ss_pred HHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHH
Q 014301 177 TAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQV 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~ 256 (427)
..+......|+.|+++ + +. .+..++.+|+|+++...+..++.........+++++++.+++|+++.+
T Consensus 187 ~~l~~~~~~p~~~~~~----~----~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~ 253 (394)
T PRK10213 187 CIFWIIKSLPSLPGEP----S----HQ-----KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDG 253 (394)
T ss_pred HHHHHHHHCCCCCccc----c----cc-----hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH
Confidence 5444333322222110 0 00 112345678898888766666656666666667644444567999999
Q ss_pred HHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhh
Q 014301 257 AGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLT 336 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (427)
.+......+++.+++.++.+++.||.+++. ............+......++.+......++.|++.+...+..
T Consensus 254 ~g~~~~~~~~~~iig~~~~~~l~~r~~~~~-------l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~ 326 (394)
T PRK10213 254 LTLVLLSFGIASFVGTSLSSFILKRSVKLA-------LAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGW 326 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999854331 2222222222223333344556666677788888888888877
Q ss_pred hhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHH
Q 014301 337 FGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCT 393 (427)
Q Consensus 337 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 393 (427)
.+...+.-++++++..+......++|..+||.+. ...+..++...+...++..++..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 327 STWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 7777643345566777777778889999999998 66677787777776665544443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=281.41 Aligned_cols=360 Identities=17% Similarity=0.162 Sum_probs=272.7
Q ss_pred HHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchh
Q 014301 9 LSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVS 88 (427)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 88 (427)
+.++.+.+++..+++..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.++.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHH-HHHHHHHHHHhhccCCcccchhHH
Q 014301 89 SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQ-LLMPLIFTAITSLNVGTHTAWRLA 166 (427)
Q Consensus 89 ~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~~~~~l~~~l~~~~~~~~~~wr~~ 166 (427)
+++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+...++|..+++ .++..+.. ..+||+.
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~ 152 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE---------LYSWHWV 152 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh---------cCCchhH
Confidence 9999999999999999976 88888999999999999999999888888888777 34444433 6699999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCccc---c--ccc------chhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHH
Q 014301 167 FIVPSTFQALTAIMVLIYGQDLPSGNYKE---F--KKT------KTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVE 235 (427)
Q Consensus 167 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (427)
|++.+++.++..+..++..+++|++++.+ . +++ +++++.++.....++.+++|.++...+..++.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (379)
T TIGR00881 153 FIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVR 232 (379)
T ss_pred HHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 99988887776666555544433321100 0 000 000000122334567788999998888888888888
Q ss_pred hhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh--cc
Q 014301 236 LTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR--VN 313 (427)
Q Consensus 236 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 313 (427)
.....+.|.|+++.+|+++.+.+...+...++.++++++.+++.||..+|+ +.................... ..
T Consensus 233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (379)
T TIGR00881 233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR----RGPLAVFFMALIIVSLLVYWLNPAA 308 (379)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHhcCcch
Confidence 888999999999888999999999999999999999999999999865443 111111111222222222222 22
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhH
Q 014301 314 SLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTS 381 (427)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 381 (427)
+.+......++.|.......+.......+ .|+++||++.|+.+...++|+.++|.+. ...+..+|+..
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 309 NPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 33344444455555444444444555554 5888999999999999999999999988 66666776653
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=289.23 Aligned_cols=350 Identities=14% Similarity=0.067 Sum_probs=274.6
Q ss_pred HHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHH
Q 014301 5 HLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSA 84 (427)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (427)
....+..++..++....+..+|.+.+|+|.+.++.+|+.+.|.+++..+++++|+++||+|||++++.+..++.++.+++
T Consensus 9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~ 88 (495)
T PRK14995 9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA 88 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 44566778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHhhccccc-cchHHHHHccc-CccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccc
Q 014301 85 SLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMF-SGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTA 162 (427)
Q Consensus 85 ~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~ 162 (427)
++++|++.++++|+++|+|.+.. +.....+.+++ |+++|++++++.....++|..+||.+++.+.+ +.+
T Consensus 89 ~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~---------~~g 159 (495)
T PRK14995 89 AFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE---------HFY 159 (495)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------cCC
Confidence 99999999999999999999876 66667776665 67899999999988888888877777776664 779
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccch------------------hhhhhh-----------------
Q 014301 163 WRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKT------------------ESREEK----------------- 207 (427)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~----------------- 207 (427)
||+.|++...+.++..++.++..++.+++++++.+.... +....+
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f 239 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLF 239 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Confidence 999999988777776666655555443332221111000 000000
Q ss_pred hHHH--------HHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhh
Q 014301 208 FVHV--------LFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVIS 279 (427)
Q Consensus 208 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~ 279 (427)
...+ -.+.+|||.+....+..++......+...++|.|+++.+|.|+.+++.......++..++.++.|++.
T Consensus 240 ~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~ 319 (495)
T PRK14995 240 IRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILV 319 (495)
T ss_pred HHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 02567888888777777777777778888999999999999999999999999999999999999999
Q ss_pred hhhccccccchhHHHHHHHHHHHHHHHHHHh---hccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehh
Q 014301 280 DRMGRRFGIRGRLWGLWAVQTAAGLLCVLLG---RVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMT 355 (427)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~ 355 (427)
||+++|+ ....+..+..+....+. ..++.+......++.|++.+...+....... +.|+++++.+.++.
T Consensus 320 ~r~g~~~-------~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 392 (495)
T PRK14995 320 SRLGLRL-------VATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIE 392 (495)
T ss_pred HHcCchH-------HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHH
Confidence 9999876 33444444443333222 2234555566778889998888776666555 67899999999999
Q ss_pred cchhhhhhHHHHHHH
Q 014301 356 GSGGTVGAVVTQMLL 370 (427)
Q Consensus 356 ~~~~~~g~~~~~~~~ 370 (427)
+...++|+.+|+.+.
T Consensus 393 ~~~~~lG~~~G~ai~ 407 (495)
T PRK14995 393 TMAYELGAGLGIAIF 407 (495)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888777
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=272.97 Aligned_cols=339 Identities=17% Similarity=0.148 Sum_probs=262.5
Q ss_pred HHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhH
Q 014301 11 LFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSP 90 (427)
Q Consensus 11 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 90 (427)
.++...+.....+..|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.+..++++++
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 93 (385)
T TIGR00710 14 SILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNI 93 (385)
T ss_pred HHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence 34445566778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHH
Q 014301 91 QSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIV 169 (427)
Q Consensus 91 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~ 169 (427)
+.+++.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..+++.+++.+.+ +.+||+.|++
T Consensus 94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---------~~~~~~~~~~ 164 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV---------WLSWHAIFAF 164 (385)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HcCHHHHHHH
Confidence 99999999999999976 8888999999999999999999999888888888777776654 6799999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhc
Q 014301 170 PSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDR 249 (427)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (427)
.++..++..+..++..++.++++++ ++ . ++..+.+++.+|||+++...+...+..........+.|.+++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLPYEAR---IQ----I-STYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI 236 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCccc---CC----H-HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 8888777666655554433222111 10 1 22344567778899998888777777777777888889999888
Q ss_pred cCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHH
Q 014301 250 FGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV--NSLWGSVLVMCVFSV 327 (427)
Q Consensus 250 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~ 327 (427)
+|.++.+.+.......++.++++++.+++.||+++|+ ..........+..+.+...... ++.........+.++
T Consensus 237 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 312 (385)
T TIGR00710 237 MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS----LLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGI 312 (385)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999886 2222211222222222211111 223344455666778
Q ss_pred HhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 328 FVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+.+...+.......|..+++++++.++.+.....++.+.+.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~ 355 (385)
T TIGR00710 313 GNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLV 355 (385)
T ss_pred HHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777777766567899999999888875554444444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=276.16 Aligned_cols=356 Identities=31% Similarity=0.546 Sum_probs=270.7
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhh-hhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPI 80 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (427)
|.++..++..++.+.......+..|. +++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+..+.++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIP 80 (366)
T ss_pred CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 45677888999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchh-hHHHHHHHHHHHhhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhh-ccCC
Q 014301 81 VLSASLVS-SPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITS-LNVG 158 (427)
Q Consensus 81 ~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~-~~~~ 158 (427)
.+++++++ +++.+++.|+++|++.+...+...+++|++|+++|++++++.....++|..+++.+++.+...+.+ .+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 160 (366)
T TIGR00886 81 CLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP 160 (366)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999 999999999999999766666788899999999999999999988899999999888877764432 1111
Q ss_pred cccchhHHH-HHHHHHHHHHHHHHHHHcCCCCCCCcccccccch----hhhhhhhHHHHHhhhcCchHHHHHHHHHHHHH
Q 014301 159 THTAWRLAF-IVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKT----ESREEKFVHVLFNGLKNYRGWILGLTYGFCFG 233 (427)
Q Consensus 159 ~~~~wr~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (427)
++.+||+.| +..++...+..++.+...++.|++++++.+.+.+ ..+ ++..+..++.+++|+++...+...+...
T Consensus 161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (366)
T TIGR00886 161 AHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVG-TGALGDQLKVFRDRHTWILALLYSVTFG 239 (366)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccccccccccc-chhHHHHHHHHhccchhhHHHHHHHHHH
Confidence 245899999 4445555554444444444333322111111100 001 1111245667888999888888777777
Q ss_pred HHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 014301 234 VELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN 313 (427)
Q Consensus 234 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (427)
......++.|.|+++.+|.++.+++.+.....+..++++++.|++.||+++|+ .... ..........+......+
T Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~----~~~~-~~~~~~~~~~~~~~~~~~ 314 (366)
T TIGR00886 240 SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR----KLLM-SFLGVAMGAFLVVLGLVS 314 (366)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch----hHHH-HHHHHHHHHHHHHhcCCC
Confidence 78888899999999989999999999999999999999999999999999985 1111 112222222222222222
Q ss_pred --chHHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhh
Q 014301 314 --SLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGA 363 (427)
Q Consensus 314 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 363 (427)
+.+.......+..++.+...+..++..++..++++|+++|+.+..+++|+
T Consensus 315 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 315 PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLGG 366 (366)
T ss_pred cchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCCC
Confidence 45555555666677777777777888887777899999999998888763
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=278.15 Aligned_cols=347 Identities=14% Similarity=0.051 Sum_probs=280.0
Q ss_pred HHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHH
Q 014301 5 HLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSA 84 (427)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (427)
+..+...++..++.....+.+|.+.++++.|+.+.+++.+++.++..+++++.|+++||+|||++++.+..+..++..+.
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 2 RLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 34567788888888889999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hchh-----hHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCC
Q 014301 85 SLVS-----SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVG 158 (427)
Q Consensus 85 ~~~~-----~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~ 158 (427)
.+.+ |++.+++.|++.|++.+.. ++..+++.|++|+++|++++++.+...++|..+|+.+++.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-------- 153 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA-------- 153 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 8887 9999999999999999987 8888999999999999999999999999999888888777665
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhh
Q 014301 159 THTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTT 238 (427)
Q Consensus 159 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (427)
..+||+.|++.++..++..+..+..++++++++++ ++.+++.. ++..+.+++.+|||.++...+..++........
T Consensus 154 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (365)
T TIGR00900 154 -TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEI--QALSNAVL-RDTREGIKFVLKNPLLRTLLLLALLFNLVFAPA 229 (365)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccc--cccchhHH-HHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 56999999998877666555544443322211111 11111111 334455677888999988887777776666666
Q ss_pred h-hhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc-chH
Q 014301 239 D-NIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN-SLW 316 (427)
Q Consensus 239 ~-~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (427)
. .+.|.|.++.+|.++.+.+.......++.+++.++.+++.||.+||+ ....+..+..+.+......+ +.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 302 (365)
T TIGR00900 230 IVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA-------LMTGAIFVIGLAILVVGLTPPNFP 302 (365)
T ss_pred HHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH-------HHHHHHHHHHHHHHHHHhhchhHH
Confidence 6 78888888878999999999999999999999999999999999886 34444444444444444444 366
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 317 GSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
...+..++.|++.+...+...++..+ .|+++||++.|+.+...+++..++|.+.
T Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 303 LFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888899988888888888775 5888999999999999999999999887
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=273.86 Aligned_cols=378 Identities=10% Similarity=0.041 Sum_probs=276.4
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIV 81 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (427)
|++...++..+..........+..|.+.+|+|.|+.+.|++.+.+.++..+++++.|+++||+||||++..+..+.+++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~ 92 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH 92 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 55667788888888877776677777889999999999999999999999999999999999999999999999988887
Q ss_pred HHHh---c-hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhH-HHHHHHHHHHHHHHhhc
Q 014301 82 LSAS---L-VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGA-GVSQLLMPLIFTAITSL 155 (427)
Q Consensus 82 ~~~~---~-~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~l~~~ 155 (427)
+++. . .++++.+++.|++.|++.+.. +.....+.+++|+++|++++|+.+...++|. .+++.++..+.+
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~----- 167 (402)
T TIGR00897 93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP----- 167 (402)
T ss_pred HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 6542 3 358889999999999998866 6677788999999999999999988888886 456655544432
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHH
Q 014301 156 NVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVE 235 (427)
Q Consensus 156 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (427)
..||+..++......++..+..+++.++.+++++++ +++ +. ++..+..++.+|||+++...+..++.....
T Consensus 168 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (402)
T TIGR00897 168 ----AFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ-TRE---KF-SELGKAATILFTNPNVLLGGMVRIINTIGL 238 (402)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc-CCc---ch-hhHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence 457655555443333333333444444433222111 110 11 223345667889999998888877777788
Q ss_pred hhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHH-HHHHHHHHHHHHHHHh--hc
Q 014301 236 LTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWG-LWAVQTAAGLLCVLLG--RV 312 (427)
Q Consensus 236 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~ 312 (427)
++..++.|.|+++ +|+++.+.+...+...++..++.+..|++.||++||+. ... ......+..+.+.... ..
T Consensus 239 ~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~----~~~~~~l~~~~~~~~l~~~~~~~~ 313 (402)
T TIGR00897 239 FGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT----VRWFGGVGCGIFTLALYYIPQHFG 313 (402)
T ss_pred HHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH----HHHHHHHHHHHHHHHHHHHHHccC
Confidence 8888999999865 79999999998888999999999999999999998761 111 1111111111111111 12
Q ss_pred cchHHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHH
Q 014301 313 NSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIV 391 (427)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 391 (427)
++.+...+..++.|++.+...+ ......+.+|++||++.|+.+...++|+.++|.+. ...+..++...+...+++.++
T Consensus 314 ~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i 392 (402)
T TIGR00897 314 HSFAVALIIAIALGIFLAGYVP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVV 392 (402)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 3455555666777777765544 33444567788999999999999999999999998 777777888888888888777
Q ss_pred HHHHHHhh
Q 014301 392 CTLPVSLI 399 (427)
Q Consensus 392 ~~~~~~~~ 399 (427)
+.+...++
T Consensus 393 ~~~~~~~~ 400 (402)
T TIGR00897 393 SAFLTAFI 400 (402)
T ss_pred HHHHHHHh
Confidence 77666554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=279.30 Aligned_cols=368 Identities=14% Similarity=0.169 Sum_probs=264.6
Q ss_pred hhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHH
Q 014301 3 AFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVL 82 (427)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (427)
.+...++..+.+.++....++..|.+++++|.|+.+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 92 (405)
T TIGR00891 13 AFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTL 92 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34566778888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCccc
Q 014301 83 SASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHT 161 (427)
Q Consensus 83 ~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~ 161 (427)
+++++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..+++.+++.+.+.. ..
T Consensus 93 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-------~~ 165 (405)
T TIGR00891 93 ACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW-------GD 165 (405)
T ss_pred HHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------Cc
Confidence 9999999999999999999999876 888899999999999999999999888888888887777665421 12
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhh-----hhhh-hHH-------HHHhhhc-Cch-HHHHHH
Q 014301 162 AWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTES-----REEK-FVH-------VLFNGLK-NYR-GWILGL 226 (427)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~-------~~~~~~~-~~~-~~~~~~ 226 (427)
+||+.|++.++..++..+.....+|+++.+++++.+++.+++ ++++ .++ ..++..+ ++. +....+
T Consensus 166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (405)
T TIGR00891 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVV 245 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHH
Confidence 599999887665555444333333322111111000000000 0000 000 0011101 111 222233
Q ss_pred HHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHH-H
Q 014301 227 TYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGL-L 305 (427)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~ 305 (427)
...+..........+.|.|+.+++|+++.+.+.+.+...++.+++.++.+++.||++||+ ....+.....+ .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~ 318 (405)
T TIGR00891 246 LVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK-------AYVCSLLAGQLLI 318 (405)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh-------hhHHHHHHHHHHH
Confidence 333334445566678899998888999999999999999999999999999999999986 33333333222 2
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhccccc-chhHH
Q 014301 306 CVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFS-KQTSI 382 (427)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~-~~~~~ 382 (427)
.......++.+...+..++.++......+....+.++ .|+++||+++|+.+...++|..++|.+. ...+..+ |+..+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 319 IPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTAL 398 (405)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 2222233444444455455666666666666666675 5888999999999999999999999999 6666555 66554
Q ss_pred HH
Q 014301 383 SV 384 (427)
Q Consensus 383 ~~ 384 (427)
..
T Consensus 399 ~~ 400 (405)
T TIGR00891 399 AS 400 (405)
T ss_pred Hh
Confidence 43
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=284.01 Aligned_cols=347 Identities=22% Similarity=0.297 Sum_probs=269.6
Q ss_pred HHHHHHhHhhhccccchhh-hhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc
Q 014301 8 WLSLFSCFFSTFSIPPLIP-IIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL 86 (427)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 86 (427)
++..++..++.....+..| .+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 5677888888888999999 899999999999999999999999999999999999999999999999999999666667
Q ss_pred hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhH
Q 014301 87 VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRL 165 (427)
Q Consensus 87 ~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~ 165 (427)
++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+...++|..+++.+++.+.+ ..+||+
T Consensus 82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---------~~~~~~ 152 (352)
T PF07690_consen 82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS---------YFGWRW 152 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------HCHHCC
T ss_pred hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh---------cccccc
Confidence 788889999999999999876 8889999999999999999999988888888777766665543 678999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcch
Q 014301 166 AFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQY 245 (427)
Q Consensus 166 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (427)
.|++.++..++..++...+.+++|++++++.+++++++++++..+.++...++|.+|...+..............+.|.|
T Consensus 153 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (352)
T PF07690_consen 153 AFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLY 232 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchh
Confidence 99999999888876543333333333222222221111112222335666677777755555556566777788999999
Q ss_pred hhhccCCc-HHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 014301 246 FYDRFGVN-LQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCV 324 (427)
Q Consensus 246 l~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (427)
+.+.+|.+ ..+.+.......+...++.++.+++.||+++|+ ..........+..+.+......++........++
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (352)
T PF07690_consen 233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR----RLLIAILLLILGALGLLLLPFSSSPVWLIIALFL 308 (352)
T ss_dssp CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88889999 899999999999999999999999999999865 2333333333333333333333455666667788
Q ss_pred HHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHH
Q 014301 325 FSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQ 367 (427)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~ 367 (427)
.|++.+...+...++..+ .|++++|++.|+.+...++|..++|
T Consensus 309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 309 IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899988889999888885 5789999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=272.70 Aligned_cols=356 Identities=12% Similarity=0.068 Sum_probs=258.3
Q ss_pred hHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHH
Q 014301 14 CFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSF 93 (427)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (427)
..+......|.+|.+.+++|.|..+.++..+++.+++.++++++|+++||+|||++++.+..+++++.+++++++|++.+
T Consensus 28 ~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l 107 (413)
T PRK15403 28 AYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQF 107 (413)
T ss_pred HHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHH
Q 014301 94 ILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPST 172 (427)
Q Consensus 94 ~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~ 172 (427)
+++|+++|++.+.. +....++.|++|+++|++++++.....++|..+|+.+++.+.+ +.+||+.|++.++
T Consensus 108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~---------~~gw~~~f~~~~~ 178 (413)
T PRK15403 108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH---------FVHWKVLFAIIAV 178 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCHHHHHHHHHH
Confidence 99999999998865 5556778999999999999999988888888877777766554 6699999999998
Q ss_pred HHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCC
Q 014301 173 FQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGV 252 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 252 (427)
..++..+..++..||.+++++++ .++ ++..+.+++.+|||+++...+...+.......+..+.|.++++.+|.
T Consensus 179 ~~~i~~~~~~~~lp~~~~~~~~~------~~~-~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~ 251 (413)
T PRK15403 179 MGLIAFVGLLLAMPETVKRGAVP------FSA-KSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGM 251 (413)
T ss_pred HHHHHHHHHHHhCCCCccccCCC------CCh-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCC
Confidence 87776655444333322211110 011 23345677889999999988888877777788888899999998999
Q ss_pred cHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHhh
Q 014301 253 NLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLL--GRVNSLWGSVLVMCVFSVFVQ 330 (427)
Q Consensus 253 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~ 330 (427)
++.+.++.......+..++..+.+++.++..+++ ..........++.+.+... ...++.+..++..++++++.+
T Consensus 252 s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~ 327 (413)
T PRK15403 252 TTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR----FIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIG 327 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh----HHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 9999999887777777777777777654433332 1111111111111111111 122333334567777888888
Q ss_pred hhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHH
Q 014301 331 AAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMI 390 (427)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 390 (427)
...+......-.-.+..+|++.++.+.....+...++... +..+. +...++....++..
T Consensus 328 ~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 328 LIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 8877776433222333478999998888887777777776 33333 44555554444333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=272.61 Aligned_cols=363 Identities=13% Similarity=0.118 Sum_probs=270.8
Q ss_pred HHHHHhHhhhccccchhhh-hhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHH-HHHHHHHHHHHHhc
Q 014301 9 LSLFSCFFSTFSIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASAT-LSLITAPIVLSASL 86 (427)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~ 86 (427)
+..++..++.....|.+|. +++++|.|+.+.|++.+.+.+...+.+++.|+++||+||||.++. +..+..++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 4566777777788888886 578999999999999999999999999999999999999987655 55556777788899
Q ss_pred hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccc--hhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccch
Q 014301 87 VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLA--NGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAW 163 (427)
Q Consensus 87 ~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~w 163 (427)
++|++.+++.|++.|.+.+.. +...++..|+.|+++|++. .+......++|..+|+.+++.+.+ ..+|
T Consensus 84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~---------~~~~ 154 (375)
T TIGR00899 84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL---------GFGF 154 (375)
T ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH---------hccc
Confidence 999999999999998877765 6677778888887777654 566666677777777766666554 6799
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhc
Q 014301 164 RLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIA 243 (427)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (427)
|+.|++.++..++..+..++..+|.|++++++.+ + . ..++.+++|+++...+..++..........+.|
T Consensus 155 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (375)
T TIGR00899 155 TVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT------R-L----EVRGLLASRDTRLLFVACTLMWGCNILYIINMP 223 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC------c-c----hhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999988777766666544443432211110 0 1 123355677777666655555555555667789
Q ss_pred chhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 014301 244 QYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMC 323 (427)
Q Consensus 244 ~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (427)
.|+++++|.++.+.+...........++.++.|++.||+++|+ ..........+........++.+.......
T Consensus 224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (375)
T TIGR00899 224 LLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR-------LMLLAALAGVAFYTGLAADNSLWALLMLQL 296 (375)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888999999998888777778888899999999999986 333333333333333444455665666666
Q ss_pred HHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHHh
Q 014301 324 VFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
+.+++.+...+....+..|..|++++++.|+.+...++|..++|.+. ...+..+++..+...+++.+++.+....
T Consensus 297 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 297 LNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 77887777777777777777667788999999999999999999998 6667778888888888777777666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=276.06 Aligned_cols=358 Identities=16% Similarity=0.114 Sum_probs=246.8
Q ss_pred hHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHH-HHH-----HHHHHHhhccccccccccCCchHHHHHHHHH
Q 014301 4 FHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAG-MAS-----FLGSIFSRLAMGPVCDLLGPRVASATLSLIT 77 (427)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~-s~~-----~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 77 (427)
....++..+++.+++..+++..|.+.+|++.++.+.+.+. +.. .++..+++++.|+++||+|||+.++.+..++
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~ 96 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM 96 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 4457788999999999999999999999999888875443 332 2233468899999999999999999999999
Q ss_pred HHHHHHHhchhhHH--------HHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHH
Q 014301 78 APIVLSASLVSSPQ--------SFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLI 148 (427)
Q Consensus 78 ~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 148 (427)
+++.+++++++|++ .++++|+++|++.+.. +....+++|++|+++|++++++.....++|..+++.++..+
T Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 97 ASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 4689999999999986 77788999999999999999999988888888888888777
Q ss_pred HHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHH-HH
Q 014301 149 FTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILG-LT 227 (427)
Q Consensus 149 ~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 227 (427)
...+.+.. .+..|||++|++..+.. +..++.+++.||+++...+++ + ++..+.+++..++++.+... +.
T Consensus 177 ~~~~~~~~-~~~~gWr~~f~~~~~~~----~~~~~~~~~~~e~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~ 246 (434)
T PRK15075 177 NQWLSPAQ-MAEWGWRIPFLIGCLIV----PFIFLIRRSLEETEEFLARKH----R-PSMREIFRSLAANWRIVLAGMLM 246 (434)
T ss_pred HHhCCHHH-HhccchHHHHHHHHHHH----HHHHHHHHhcCCCHHHHHhhh----c-cccccHHHHHHHhHHHHHHHHHH
Confidence 65432100 01579999998754332 122223333333221100000 0 11122233344555554432 33
Q ss_pred HHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHH-HH
Q 014301 228 YGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGL-LC 306 (427)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~~ 306 (427)
.+......+....+.|.|+++.+|+++.+.++......++.+++.++.|+++||++||+ .......+..+ ..
T Consensus 247 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~-------~~~~~~~~~~~~~~ 319 (434)
T PRK15075 247 VAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP-------VLIAFTVLAILTAY 319 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHH
Confidence 33445556677889999999888999999998888888999999999999999999986 22222222111 11
Q ss_pred H---HHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhh-hhhHHHHHHH-hhcccccc
Q 014301 307 V---LLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGT-VGAVVTQMLL-FSGSKFSK 378 (427)
Q Consensus 307 ~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~-~g~~~~~~~~-~~~~~~~~ 378 (427)
. .....++.........+.+++.+...+....+..| .|++.|+++.|+.+..+. +++.++|.+. ...+..++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 320 PALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 1 11122233223333344555665555555566665 488889999999766555 4577888888 55555554
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=272.61 Aligned_cols=376 Identities=13% Similarity=0.033 Sum_probs=280.3
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIV 81 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (427)
|+++..+...+++.++........+.+.+|++.++.+.+++.+.+.+++.+.+++.|+++||+|||++++.+..+.+++.
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGC 82 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHH
Confidence 67788888889988877666777777889999999999999999999999999999999999999999999999999988
Q ss_pred HHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcc
Q 014301 82 LSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTH 160 (427)
Q Consensus 82 ~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~ 160 (427)
+.+.++++. ++.|+++|++.+.. +...+++.|++|+++|++++++.+...++|..+||.+++.+.+ .
T Consensus 83 ~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~---------~ 150 (393)
T PRK11195 83 LLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD---------P 150 (393)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H
Confidence 887777664 78899999999987 8889999999999999999999998888888888888777764 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhh
Q 014301 161 TAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240 (427)
Q Consensus 161 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (427)
.|+..+.+.+...++..+....++|+ |++++++ +.+..... ++.++..+.++++|.+........+..........
T Consensus 151 -~~~~~~~i~~~~~~~~~~~~~~l~~~-~~~~~~~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (393)
T PRK11195 151 -HAEAALAVCALIYLLAALFNLFIPRL-GARRPGQ-SWNPIALL-RDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRF 226 (393)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCC-ccccccc-CCCHHHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence 47877777665554443333444433 2221111 11100001 23344456778888876655554444555555666
Q ss_pred hhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 014301 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVL 320 (427)
Q Consensus 241 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (427)
..|.|+++.+|.++.+.|...+..+++.+++++..+++.||.++++ ....+... +.........++.+...+
T Consensus 227 ~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~-------~~~~g~~~-~~~~~~~~~~~~~~~~~~ 298 (393)
T PRK11195 227 LVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR-------VLPAGILM-GLVVLLMALQHSLLPAYP 298 (393)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-------hHHHHHHH-HHHHHHHHHHhHHHHHHH
Confidence 6778888888999999999999999999999999999999877765 33333322 222333344455555566
Q ss_pred HHHHHHHHhhhhhhhhhhcccccCcCc--ceeeeehhcchhhhhhHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHh
Q 014301 321 VMCVFSVFVQAAGGLTFGVVPFVSKRS--LGVISGMTGSGGTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 321 ~~~~~g~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
..++.|++.+...++..+...+.++++ +|++.++.+...+++..++..+....+..+.+..+.+.....+++..+...
T Consensus 299 ~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 299 LLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred HHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 667788888877777777777665543 689999999999999999998884446778888887777777766666555
Q ss_pred hcc
Q 014301 399 IYF 401 (427)
Q Consensus 399 ~~~ 401 (427)
.++
T Consensus 379 ~~~ 381 (393)
T PRK11195 379 WRW 381 (393)
T ss_pred HHH
Confidence 544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=272.56 Aligned_cols=362 Identities=17% Similarity=0.074 Sum_probs=265.2
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhh-hhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPI 80 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (427)
|++....+..++..++..+..+.+|. +++++|.|+.+.|++.+.+.+++.+++++.|+++||+||||+++.+.++.+++
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS 94 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence 45666777888888888888899986 67899999999999999999999999999999999999999999999988877
Q ss_pred HHHHhch--------hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 014301 81 VLSASLV--------SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTA 151 (427)
Q Consensus 81 ~~~~~~~--------~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 151 (427)
.+.+.++ .+++.+++.|+++|++.+.. +...+++.|++|+|+|++++++.+...+.|..+|+.+++.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~- 173 (399)
T PRK05122 95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH- 173 (399)
T ss_pred HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH-
Confidence 6665543 25778999999999999987 7777888999999999999999988888888777777766654
Q ss_pred HhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHH
Q 014301 152 ITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFC 231 (427)
Q Consensus 152 l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (427)
+.+||+.+++.++..++..+. ..+ .|++++++ ++ + ++.++.+++ .+.......+.
T Consensus 174 --------~~g~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~--~~----~-~~~~~~~~~------~~~~~~~~~~~ 228 (399)
T PRK05122 174 --------WGGLAGLGLLIMLLALLGLLL---ARP-RPAVPPVK--GE----R-LPFRRVLGR------VWPYGMGLALA 228 (399)
T ss_pred --------cccHHHHHHHHHHHHHHHHHH---Hhc-CCCCCCCC--cc----c-hhHHHHHHH------HHHHHHHHHHH
Confidence 679999988766654433222 221 22221111 00 0 122222221 22222222233
Q ss_pred HHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh
Q 014301 232 FGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR 311 (427)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (427)
...+.....+.+.|+.+. |.+ +.+...+...++.++++++.+++.||+++|+ ....+..+..+.......
T Consensus 229 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-------~~~~~~~~~~~~~~~~~~ 298 (399)
T PRK05122 229 SIGFGTIATFITLYYAAR-GWD--GAALALTLFGVAFVGARLLFGNLINRLGGLR-------VAIVSLLVEILGLLLLWL 298 (399)
T ss_pred HHHHHHHHHHHHHHHHHc-ccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHHHHH
Confidence 344455666778887654 653 4456667778888899999999999999876 444444444444445455
Q ss_pred ccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHH
Q 014301 312 VNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMM 389 (427)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 389 (427)
.++.+...+..++.|++.+..++....... +.|+++||++.|+.+...++|..++|.+. ...+..+++..+...+++.
T Consensus 299 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 378 (399)
T PRK05122 299 APSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAA 378 (399)
T ss_pred hccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 566666667778888888877776655555 56889999999999999999999888887 6666778999888888777
Q ss_pred HHHHHHHHhh
Q 014301 390 IVCTLPVSLI 399 (427)
Q Consensus 390 ~~~~~~~~~~ 399 (427)
+++.+.....
T Consensus 379 ~~~~~~~~~~ 388 (399)
T PRK05122 379 LLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHh
Confidence 7766655543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=269.80 Aligned_cols=373 Identities=17% Similarity=0.139 Sum_probs=281.6
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcch-----hhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTD-----VGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLI 76 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 76 (427)
|++...|+..++.........+.+|.+.+++|.+..+ .|++.+++.++..+++++.|+++||+|||+.+..+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 93 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 4566778888888888888999999999999998665 48899999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHhhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhcc
Q 014301 77 TAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLN 156 (427)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~ 156 (427)
.+++.++..+++|++.+++.|++.|++.+..+....++.|++|+++|++++++......+|..+++.+++.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------ 167 (408)
T PRK09874 94 MGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD------ 167 (408)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 99999999999999999999999999866557777888999999999999999988888888777777766654
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHH-HHHHHHHHH
Q 014301 157 VGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGL-TYGFCFGVE 235 (427)
Q Consensus 157 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 235 (427)
..+||+.|++.++..++..+..++..++++++.+++ + + .+. +...+.+++|+++...+ .........
T Consensus 168 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (408)
T PRK09874 168 ---SYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK---E-M----LHM-REVVTSLKNPKLVLSLFVTTLIIQVAT 235 (408)
T ss_pred ---HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch---h-h----hHH-HHHHHhCcCCchHHHHHHHHHHHHHHH
Confidence 569999999998887776666655544433221111 0 0 111 12234567777655333 233333444
Q ss_pred hhhhhhhcchhhhccCCcHH---HHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc
Q 014301 236 LTTDNIIAQYFYDRFGVNLQ---VAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV 312 (427)
Q Consensus 236 ~~~~~~~~~~l~~~~g~s~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (427)
.....+++.|..+..+.... ..+.+....+++..++.+..|++.||++||+ ....+..+..+........
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~ 308 (408)
T PRK09874 236 GSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK-------ILITALIFSVLLLIPMSFV 308 (408)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-------hHHHHHHHHHHHHHHHHHh
Confidence 45566777787765332221 2455666677788888899999999999986 4444444444444444445
Q ss_pred cchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHH
Q 014301 313 NSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMI 390 (427)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 390 (427)
++.+...+..++.|++.+...+...+... ..+++++|+.++..+....+|..++|.+. ...+..+++..|...+++.+
T Consensus 309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l 388 (408)
T PRK09874 309 QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVL 388 (408)
T ss_pred ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 56666667777888888888887777766 45778899999999999999999999998 77777889999998888887
Q ss_pred HHHHHHHhh
Q 014301 391 VCTLPVSLI 399 (427)
Q Consensus 391 ~~~~~~~~~ 399 (427)
++.+.....
T Consensus 389 ~~~~~~~~~ 397 (408)
T PRK09874 389 FNAVYSWNS 397 (408)
T ss_pred HHHHHHHHH
Confidence 777665443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=279.33 Aligned_cols=365 Identities=15% Similarity=0.107 Sum_probs=272.9
Q ss_pred hccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHH-H
Q 014301 18 TFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFIL-V 96 (427)
Q Consensus 18 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 96 (427)
...++...|.+.+++|.|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++++.+++ .
T Consensus 35 ~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (455)
T TIGR00892 35 PKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTA 114 (455)
T ss_pred hcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344678899999999999999999999999999999999999999999999999999999999999999999998865 5
Q ss_pred HHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHH
Q 014301 97 RFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQA 175 (427)
Q Consensus 97 r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~ 175 (427)
|++.|++.+.. ++....+.++++ ++|+++.++.+....+|..+++.+++.+.+ ..|||+.|++.+++.+
T Consensus 115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~---------~~gwr~~f~~~~~~~~ 184 (455)
T TIGR00892 115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE---------SFGWRGSFLILGGLLL 184 (455)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH---------HhChHHHHHHHHHHHH
Confidence 79999999865 777778889985 789999999988888888777776666554 6699999999998877
Q ss_pred HHHHHHHHHcCCCCCCC--ccc--c--ccc-chhh----h-hhhhHHH-HHhhhcCchHHHHHHHHHHHHHHHhhhhhhh
Q 014301 176 LTAIMVLIYGQDLPSGN--YKE--F--KKT-KTES----R-EEKFVHV-LFNGLKNYRGWILGLTYGFCFGVELTTDNII 242 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~--~~~--~--~~~-~~~~----~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (427)
+..+..++..+++++++ +.+ . +++ ..++ + .++..+. ..+.+++|+++...+..++..........++
T Consensus 185 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 264 (455)
T TIGR00892 185 HCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFL 264 (455)
T ss_pred HHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHH
Confidence 66555555443222110 000 0 000 0000 0 0011111 1246788999888887777777777778889
Q ss_pred cchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 014301 243 AQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVM 322 (427)
Q Consensus 243 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (427)
|.|+++ .|+++.+++...+..+++.++++++.+++.||...++. +......+....++........++.+..++..
T Consensus 265 ~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~---~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 265 VPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH---VQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH---HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 999876 59999999999999999999999999999997432210 11122222333333333444456677777778
Q ss_pred HHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhccc-ccchhHHHHHHHHHHHHHHHH
Q 014301 323 CVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSK-FSKQTSISVMGLMMIVCTLPV 396 (427)
Q Consensus 323 ~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~ 396 (427)
++.|++.+...+...+...+ .|++++|++.|+.+...++|..++|.+. ...+. .+|+..|...+++.+++.+..
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 88899888888887777774 5888899999999999999999999998 55444 468888888777766665543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=279.38 Aligned_cols=351 Identities=12% Similarity=0.026 Sum_probs=268.0
Q ss_pred hHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHH
Q 014301 4 FHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLS 83 (427)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (427)
++..+...++..++.....+..|.+.+++|.|+.+.+++.+.+.++..++.+++|+++||+|||++++.+..+.+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 91 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLF 91 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 44566667777777788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccc
Q 014301 84 ASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTA 162 (427)
Q Consensus 84 ~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~ 162 (427)
++++++++.+++.|+++|++.+.. +.....+.|++|+++|+++.++.....++|..+|+.+++.+.+ +.+
T Consensus 92 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~---------~~g 162 (471)
T PRK10504 92 CALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE---------YAS 162 (471)
T ss_pred HHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---------hcc
Confidence 999999999999999999999987 7888889999999999999999988888888877777766655 679
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccc------------------cccch-----------------------
Q 014301 163 WRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEF------------------KKTKT----------------------- 201 (427)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~----------------------- 201 (427)
||+.|.+......+..+......|+.++++++.. ++.+.
T Consensus 163 w~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (471)
T PRK10504 163 WHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYL 242 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999887776666655555444332211100 00000
Q ss_pred -hhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhh
Q 014301 202 -ESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISD 280 (427)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 280 (427)
++++.+....-.+.+|||+++...+..++..........+.|.|++...|.++.+.++......++..++.++.+++.|
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 322 (471)
T PRK10504 243 LHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVN 322 (471)
T ss_pred HHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000124678899888877777777776666778888988778999999999998888888888899999999
Q ss_pred hhccccccchhHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhc
Q 014301 281 RMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV---NSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTG 356 (427)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~ 356 (427)
|+++|+ ....+..+..+........ ++.+......++.|++.+...+....... ..|++.+|+++|+.+
T Consensus 323 r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 395 (471)
T PRK10504 323 RFGYRR-------VLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLS 395 (471)
T ss_pred HcCchH-------HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHH
Confidence 999986 3443444333333322222 23333344455667777777777766666 568889999999999
Q ss_pred chhhhhhHHHHHHH
Q 014301 357 SGGTVGAVVTQMLL 370 (427)
Q Consensus 357 ~~~~~g~~~~~~~~ 370 (427)
+..++|..+++.+.
T Consensus 396 ~~~~~g~~ig~~i~ 409 (471)
T PRK10504 396 MIMQLSMSIGVTIA 409 (471)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998887
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=272.74 Aligned_cols=380 Identities=11% Similarity=0.072 Sum_probs=255.5
Q ss_pred HHHHHHHHHhHhhhccccchhhh-hhhhc--CCCcchhhHHH-----HHHHHHHHHhhccccccccccCCchHHHHHHHH
Q 014301 5 HLAWLSLFSCFFSTFSIPPLIPI-IRHDL--NLTDTDVGTAG-----MASFLGSIFSRLAMGPVCDLLGPRVASATLSLI 76 (427)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~g~~~-----s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 76 (427)
....+..+++.++...++...|. +.+++ +.++. .+++. ++..++..+++++.|+++||+|||+++..+..+
T Consensus 25 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~ 103 (438)
T PRK09952 25 LGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWM 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34556777888888888888875 45555 66665 46554 345567789999999999999999999999999
Q ss_pred HHHHHHHHhchhhHH--------HHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHH
Q 014301 77 TAPIVLSASLVSSPQ--------SFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPL 147 (427)
Q Consensus 77 ~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 147 (427)
++++++++++++|++ .++++|+++|++.|.. +....++.|++|+|+|++..+..+.+..+|..++..+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~ 183 (438)
T PRK09952 104 MGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSL 183 (438)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 5889999999999987 7788899999999999999998877777777666555554
Q ss_pred HHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccc-cchhhhhhhhHHHHHhhhcCchHHHHHH
Q 014301 148 IFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKK-TKTESREEKFVHVLFNGLKNYRGWILGL 226 (427)
Q Consensus 148 l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (427)
+...+.+.. ...++||++|++.+++.++... ++++.||+++.+.++ +.++++ ++ ....+..+++|+.+...+
T Consensus 184 l~~~~~~~~-~~~~gWr~~f~~~~~~~l~~~~----l~~~~~es~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~ 256 (438)
T PRK09952 184 ISMMTTDEQ-FLSWGWRIPFLFSIVLVLIALW----VRNGMEESAEFEQQQHEQAAAK-KR-IPVIEALLRHPGAFLKII 256 (438)
T ss_pred HHHhCCHHH-hhccChHHHHHHHHHHHHHHHH----HHHhCCCChhHHHHHhhccccc-cc-CCHHHHHHHchHHHHHHH
Confidence 443221100 0146999999988776544322 222222222111110 000000 00 111223456677666544
Q ss_pred -HHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHH
Q 014301 227 -TYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLL 305 (427)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (427)
..++.....+...++.|.|+++.+|++...........++...++.++.|+++||++||+ ....+..+..+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~-------~~~~~~~~~~~~ 329 (438)
T PRK09952 257 ALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR-------VYITGALIGTLS 329 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHHHH
Confidence 344445566777889999998888999876665666667777888889999999999986 222332222222
Q ss_pred HHH--H-hhcc-chHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhh-hhhHHHHHHH-hhcc--cc
Q 014301 306 CVL--L-GRVN-SLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGT-VGAVVTQMLL-FSGS--KF 376 (427)
Q Consensus 306 ~~~--~-~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~-~g~~~~~~~~-~~~~--~~ 376 (427)
... . .... +.+......++.+++.+...+...++.+| .|++.|+++.|+.+..+. +++.++|.+. ...+ ..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~ 409 (438)
T PRK09952 330 AFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGG 409 (438)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111 1 1122 33333444555677777777777788786 478889999998766654 8899999888 4433 23
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh
Q 014301 377 SKQTSISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~ 399 (427)
+|...+....++.+++.+..+..
T Consensus 410 ~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 410 SWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred CchHHHHHHHHHHHHHHHHHHHc
Confidence 57777777777777776665543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=269.62 Aligned_cols=371 Identities=12% Similarity=0.090 Sum_probs=271.1
Q ss_pred HHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHH
Q 014301 5 HLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSA 84 (427)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (427)
....+.+++..+......+..|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+..+++++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~ 108 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 44556677777778889999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ---hchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHH-h------
Q 014301 85 ---SLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAI-T------ 153 (427)
Q Consensus 85 ---~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l-~------ 153 (427)
..++|++.++++|+++|+|.+.. +..+.++.|+.++++|.+.+++.+..+.+|..+|+.+++.+.... .
T Consensus 109 ~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~ 188 (438)
T PRK10133 109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhh
Confidence 56899999999999999999987 888888899877777777899999999999999988876554100 0
Q ss_pred ------hc--cCCc--ccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHH
Q 014301 154 ------SL--NVGT--HTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWI 223 (427)
Q Consensus 154 ------~~--~~~~--~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (427)
+. +... ..+||++|+....+..+..++..+. +.|+.++++.++ +++ .+..+..++.+|+|.++.
T Consensus 189 ~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~--~~p~~~~~~~~~---~~~-~~~~~~~~~ll~~~~~~~ 262 (438)
T PRK10133 189 LDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT--KFPALQSDNHSD---AKQ-GSFSASLSRLARIRHWRW 262 (438)
T ss_pred hhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCcccccc---ccc-cchhhhHHHHHhCchHHH
Confidence 00 0000 0367777765443333222222221 122211111110 001 223344567788999888
Q ss_pred HHHHHHHHHHHHhhhhhhhcchh-hhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHH
Q 014301 224 LGLTYGFCFGVELTTDNIIAQYF-YDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAA 302 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 302 (427)
..+..++....+.....|.+.|+ ++.+|+++.+++.......++..+++++.+++.||+++|+ ....+..+.
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~-------~l~~~~~~~ 335 (438)
T PRK10133 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK-------VLAAYALIA 335 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-------HHHHHHHHH
Confidence 77777777777777788888885 5678999999999999999999999999999999999986 344444444
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhccccc-chh
Q 014301 303 GLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFS-KQT 380 (427)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~-~~~ 380 (427)
...+......++. .......+.|++.+..+|..++...+..+++.+++.++... ..+|+.++|.+. ...+..+ .+.
T Consensus 336 ~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~ 413 (438)
T PRK10133 336 MALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPT 413 (438)
T ss_pred HHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHhH-HhccchHHHHHHHHHHHhccchHH
Confidence 3433333333333 23456778999999999999998887666677888888864 556778888777 5556665 566
Q ss_pred HHHHHHHHHH
Q 014301 381 SISVMGLMMI 390 (427)
Q Consensus 381 ~~~~~~~~~~ 390 (427)
++++..++.+
T Consensus 414 ~~~v~~~~~~ 423 (438)
T PRK10133 414 AELIPALCFA 423 (438)
T ss_pred HHHHHHHHHH
Confidence 6654444333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=268.83 Aligned_cols=372 Identities=17% Similarity=0.176 Sum_probs=261.8
Q ss_pred hhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch----hhHH
Q 014301 16 FSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV----SSPQ 91 (427)
Q Consensus 16 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~~~~ 91 (427)
..+..+....|.+++ +|.|+++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.++.+.. ++++
T Consensus 41 ~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (438)
T TIGR00712 41 LVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIA 119 (438)
T ss_pred HHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHH
Confidence 334445667787776 59999999999999999999999999999999999999999999999988887764 5678
Q ss_pred HHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHH
Q 014301 92 SFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVP 170 (427)
Q Consensus 92 ~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~ 170 (427)
.+.+.|++.|++.+.. ++....+.|++|+++|++++++.+...++|..+++.+...... + +.+||..|++.
T Consensus 120 ~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~---~-----~~~w~~~f~~~ 191 (438)
T TIGR00712 120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA---W-----FNDWHAALYFP 191 (438)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH---H-----hhhhHHHHHHH
Confidence 8889999999999876 7788888999999999999999988888887776655443222 1 45899999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCc----c--cccc--c--chhhhhhhhHHH-HHhhhcCchHHHHHHHHHHHHHHHhhhh
Q 014301 171 STFQALTAIMVLIYGQDLPSGNY----K--EFKK--T--KTESREEKFVHV-LFNGLKNYRGWILGLTYGFCFGVELTTD 239 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~--~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (427)
++++++..+..+++.+|.|++.+ + +.+. + ++++++.+.++. .+..+||+.+|...+..++.....++..
T Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T TIGR00712 192 AICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVL 271 (438)
T ss_pred HHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 98888766665555554443210 0 0000 0 000010111122 2346789999988887777777778888
Q ss_pred hhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHH--HhhccchHH
Q 014301 240 NIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVL--LGRVNSLWG 317 (427)
Q Consensus 240 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 317 (427)
++.|.|+++..|+++.+++.......+.++++.++.|++.||+++++. ............+.... .....+.+.
T Consensus 272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T TIGR00712 272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR----GATGVFFMTLVTIAVIVYWMNPAGNPLV 347 (438)
T ss_pred HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc----cHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 999999998889999999999999999999999999999999965431 11111111111111111 111223333
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhh-HHHHHHH-hhcccccchhHHHHHHHHHHHHHH
Q 014301 318 SVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGA-VVTQMLL-FSGSKFSKQTSISVMGLMMIVCTL 394 (427)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 394 (427)
.....+..|++.............+ .|++.||++.|+.+..++.++ .++|.+. ...+..++...+....+..+++.+
T Consensus 348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 427 (438)
T TIGR00712 348 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 427 (438)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3333334444322222222233444 578899999999999988875 6788888 666777898888887777777766
Q ss_pred HHHhhc
Q 014301 395 PVSLIY 400 (427)
Q Consensus 395 ~~~~~~ 400 (427)
..+...
T Consensus 428 ~~~~~~ 433 (438)
T TIGR00712 428 LLIVVM 433 (438)
T ss_pred HHHHHH
Confidence 665544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=265.61 Aligned_cols=338 Identities=14% Similarity=0.043 Sum_probs=239.6
Q ss_pred HHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc
Q 014301 7 AWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL 86 (427)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 86 (427)
.....+....+.....+.+|.+.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+.++.+..+..++..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~ 87 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL 87 (392)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhH
Q 014301 87 VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRL 165 (427)
Q Consensus 87 ~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~ 165 (427)
++|++.+++.|+++|++.+.. +....++.|++|+++|+++.++.+...++|..+++.++..+.+ ..+||+
T Consensus 88 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~---------~~g~~~ 158 (392)
T PRK10473 88 AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML---------KFPWQS 158 (392)
T ss_pred hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CcChHH
Confidence 999999999999999998876 7788899999999999999999988887777777666655443 669999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcch
Q 014301 166 AFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQY 245 (427)
Q Consensus 166 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (427)
.|++.++..++..+..+...+|+++++++ ++ ++..+..++.++||+++...+...+.......+..+.|.+
T Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (392)
T PRK10473 159 LFYTMAAMGILVLLLSLFILKETRPARAP--AA-------SSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVL 229 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccC--Cc-------cchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 99999888777766655444433222111 10 1112233456778887766665555555555666777888
Q ss_pred hhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 014301 246 FYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVF 325 (427)
Q Consensus 246 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (427)
+++++|+++.+.+...+..++..+++.++.+++.||+++|+ ....+..+..+........++.+.......+.
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 302 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT-------LMLTSQVLFLAAGITLALSPSHAVSLFGITLI 302 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999886 34444444444344333333333333333444
Q ss_pred HHHhhhhhhhhhhcccccCc-CcceeeeehhcchhhhhhHHHHHHH
Q 014301 326 SVFVQAAGGLTFGVVPFVSK-RSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 326 g~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+.+.+...+....... .|. ++.|.+.+.......+|..+++.+.
T Consensus 303 ~~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~l~ 347 (392)
T PRK10473 303 CAGFSVGFGVAMSQAL-GPFSLRAGVASSTLGIAQVCGSSLWIWLA 347 (392)
T ss_pred HHHHHHHhHHHHHHHh-ccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333322111 122 3334444444433344455554444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=265.31 Aligned_cols=344 Identities=14% Similarity=0.059 Sum_probs=259.8
Q ss_pred HHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhH
Q 014301 11 LFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSP 90 (427)
Q Consensus 11 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 90 (427)
..+.++....+.|..|.+++++|.|+++.++..+++.++..++++++|+++||+|||+.+..+..+..++.+++.+++++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 94 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA 94 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 44455556678888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHH
Q 014301 91 QSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIV 169 (427)
Q Consensus 91 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~ 169 (427)
+.+++.|+++|++.+.. +...+.+.|+++++++++..+.......+|..+++.+++.+.+ +.+||+.|++
T Consensus 95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---------~~g~~~~~~~ 165 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN---------HFGWQAIFAT 165 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCChHHHHHH
Confidence 99999999999998865 6677888999999999998888877777777777766665554 6799999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhc
Q 014301 170 PSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDR 249 (427)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (427)
.++..++..+..++++|++++++ + ++.+..+++.+|+|+++...+.............++.|.++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~- 232 (401)
T PRK11043 166 LFAITLLLILPTLRLKPSKKARK-----Q-------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ- 232 (401)
T ss_pred HHHHHHHHHHHHHHcCCCCCccc-----c-------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-
Confidence 98888777666665554432211 0 1112345677788888776666655566666777788888865
Q ss_pred cCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHH
Q 014301 250 FGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR--VNSLWGSVLVMCVFSV 327 (427)
Q Consensus 250 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~ 327 (427)
+|+++.+.+.......++..++++..+++.||+++|+ ..........+..+.+..... .++.+...+...+.++
T Consensus 233 ~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (401)
T PRK11043 233 MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ----LLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAA 308 (401)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 6999999998888778888889999999999998875 222222222232222222222 2344445555667788
Q ss_pred HhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchh
Q 014301 328 FVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQT 380 (427)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~ 380 (427)
+.+..++...+...+..++++|++.|+.+.....++..++.+. ...+......
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 309 ANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence 8888888777766655567899999999999888888888888 4444433333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=277.24 Aligned_cols=373 Identities=16% Similarity=0.229 Sum_probs=253.6
Q ss_pred hhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHH
Q 014301 3 AFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVL 82 (427)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (427)
.+...++..+++.++.....+..|.+.+++|.|+.+.+++.+.+.+++.+++++.|+++||+|||+.+..+.++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 100 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTL 100 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34566777888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCccc
Q 014301 83 SASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHT 161 (427)
Q Consensus 83 ~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~ 161 (427)
+.++++|++.+++.|++.|++.+.. +....++.|++|+++|++++++.....++|..+++.+.+.+.+ ..
T Consensus 101 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~ 171 (496)
T PRK03893 101 ACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP---------VW 171 (496)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cC
Confidence 9999999999999999999998876 7888889999999999999999988888888777766665544 67
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhh------hhhhHHH-------------HHhhh------
Q 014301 162 AWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESR------EEKFVHV-------------LFNGL------ 216 (427)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------------~~~~~------ 216 (427)
+||+.|++.++..++........+++.+.+++++.+.+.++.. ++..... +....
T Consensus 172 ~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (496)
T PRK03893 172 GWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIV 251 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 9999998754443332222222222111000000000000000 0000000 00000
Q ss_pred --------------------cC-chHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccc
Q 014301 217 --------------------KN-YRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMG 275 (427)
Q Consensus 217 --------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 275 (427)
++ +......+..+...........++|.|+++.+|+++.+.+.+.+...++.+++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~ 331 (496)
T PRK03893 252 AVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVG 331 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000000001111111112345678999987889999999999999999999999999
Q ss_pred hhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeee
Q 014301 276 GVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV--NSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVIS 352 (427)
Q Consensus 276 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~ 352 (427)
|++.||+++|+ ....+..+..+........ .+.+......++.+.......+....+..+ .|+++||+++
T Consensus 332 g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 404 (496)
T PRK03893 332 GFLGDWLGTRK-------AYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGL 404 (496)
T ss_pred HHHHHHhcchH-------HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhccc
Confidence 99999999886 3333333333332222222 222222232233333322334444555554 5788899999
Q ss_pred ehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHH
Q 014301 353 GMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIV 391 (427)
Q Consensus 353 g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 391 (427)
|+.+....+|+.++|.+. ...+..++...+...+.+..+
T Consensus 405 ~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 405 GFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred chhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999988 777778888777555544433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=264.56 Aligned_cols=335 Identities=18% Similarity=0.174 Sum_probs=251.5
Q ss_pred hhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 014301 17 STFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILV 96 (427)
Q Consensus 17 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (427)
...++.|.+|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+.+++...+.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 44567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHH
Q 014301 97 RFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQA 175 (427)
Q Consensus 97 r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~ 175 (427)
|++.|++.+.. +...+++.|++|+++|++++++.+....+|..+++.+++.+.+ ..+||+.|++.++..+
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~ 156 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV---------WFSWHAIFWVLALAAI 156 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HcChHHHHHHHHHHHH
Confidence 99999999876 8888899999999999999999988888888777777666654 5699999999888877
Q ss_pred HHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHH
Q 014301 176 LTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQ 255 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~ 255 (427)
+..+...+..++.+++++++. . +. ++..+.+++.+++|+.+...+...+..........+.|.++.+.+|+++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~-~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 230 (377)
T PRK11102 157 LAAALVFFFIPETLPKERRQP-F----HL-RTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQ 230 (377)
T ss_pred HHHHHHHHhCCccCcccccCC-C----Ch-HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHH
Confidence 766655544443322211110 0 00 22234556778889888877777666666777777888888888899999
Q ss_pred HHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHhhhhhh
Q 014301 256 VAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV-NSLWGSVLVMCVFSVFVQAAGG 334 (427)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~ 334 (427)
+.+.......++.++++++.+++.||+++|+ ..........+..+........ .+.+...+...+.+.+.+...+
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (377)
T PRK11102 231 NFGYYFALNIVFLFVMTIINSRFVRRVGALN----MLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISS 306 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999986 1111111112222222222222 2334344444444444444444
Q ss_pred hhhhcccccCcCcceeeeehhcchhh-hhhHHHHHHH
Q 014301 335 LTFGVVPFVSKRSLGVISGMTGSGGT-VGAVVTQMLL 370 (427)
Q Consensus 335 ~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~~~~~ 370 (427)
.......+..|+.+|++.++.+.... +|..+++.+.
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 307 NAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666889999998877654 6677777655
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=282.18 Aligned_cols=353 Identities=13% Similarity=0.064 Sum_probs=278.7
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIV 81 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (427)
+.....++..++..++.....+..|.+.+++|.|+.+.+++.+.+.++..++.++.|+++||+|||+.++.+..+..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 44556677888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcc
Q 014301 82 LSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTH 160 (427)
Q Consensus 82 ~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~ 160 (427)
+++++++|++.+++.|+++|++.+.. +...+++.|++|+++|++++++......+|..+|+.+++.+.+ +
T Consensus 82 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---------~ 152 (485)
T TIGR00711 82 LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE---------N 152 (485)
T ss_pred HHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc---------C
Confidence 99999999999999999999999977 8888999999999999999999988888888777776665544 7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccc--------------------cch---hhh-------------
Q 014301 161 TAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKK--------------------TKT---ESR------------- 204 (427)
Q Consensus 161 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~---~~~------------- 204 (427)
.+||+.|++.+.++++..+..++..++++++++++.+. +++ +++
T Consensus 153 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (485)
T TIGR00711 153 YHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAI 232 (485)
T ss_pred cCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHH
Confidence 79999999988887776665555444322221111110 000 000
Q ss_pred --------hhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccch
Q 014301 205 --------EEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGG 276 (427)
Q Consensus 205 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g 276 (427)
+++....-.+.+|+|+++...+..++.....+....++|.|+++.+|.++.+++.......++.+++.++.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 312 (485)
T TIGR00711 233 IAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAG 312 (485)
T ss_pred HHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000012467888888888888888888888888999999998999999999999999999999999999
Q ss_pred hhhhhhccccccchhHHHHHHHHHHHHHHHHHHh--h--ccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceee
Q 014301 277 VISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLG--R--VNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVI 351 (427)
Q Consensus 277 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~ 351 (427)
++.||++||+ ....+..+..+...... . ..+.+......++.|++.+...+....... +.|++++|++
T Consensus 313 ~l~~r~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~ 385 (485)
T TIGR00711 313 RMGDKIDPRK-------LVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARG 385 (485)
T ss_pred HHHhhcCcHH-------HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHH
Confidence 9999999986 44444444444444433 1 224455556677888888877766655444 6788999999
Q ss_pred eehhcchhhhhhHHHHHHH
Q 014301 352 SGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 352 ~g~~~~~~~~g~~~~~~~~ 370 (427)
.|+.+....+|+.+++.+.
T Consensus 386 ~~~~~~~~~~g~~ig~~i~ 404 (485)
T TIGR00711 386 SSLSNFTRQLGGSIGTALI 404 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=265.65 Aligned_cols=360 Identities=16% Similarity=0.114 Sum_probs=257.8
Q ss_pred hHHHHHHHHHhHhhhccccchhhh-hhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHH
Q 014301 4 FHLAWLSLFSCFFSTFSIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVL 82 (427)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (427)
+...+...++......+..|.+|. +++|+|.|+.+.|++.+.+.+++.+++++.|+++||+||||+++.+.+...++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~ 96 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGL 96 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Confidence 445556667777777778888886 6789999999999999999999999999999999999999999999888766554
Q ss_pred HH---hc-----hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 014301 83 SA---SL-----VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAIT 153 (427)
Q Consensus 83 ~~---~~-----~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~ 153 (427)
.. +. .+|++.+++.|+++|++.+.. +...+++.|++|+|+|++++++.+...+.|..+|+.+++.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~--- 173 (392)
T PRK12382 97 AYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS--- 173 (392)
T ss_pred HHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh---
Confidence 32 21 368899999999999999876 7777888999999999999999988888888777777666554
Q ss_pred hccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHH
Q 014301 154 SLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFG 233 (427)
Q Consensus 154 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (427)
..+||+.+.+..+..++... ..++ .|++++++.++ ++.++..+...+ +. +...+...
T Consensus 174 ------~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~-~~-----~~~~l~~~ 230 (392)
T PRK12382 174 ------HFGFAALALTTMVLPLLAWA---FNGT-VRKVPAHAGER-------PSLWSVVGLIWK-PG-----LGLALQGV 230 (392)
T ss_pred ------ccChHHHHHHHHHHHHHHHH---HHHh-ccCCCCCcccC-------chHHHHHHHHHH-hH-----HHHHHHHH
Confidence 67999877765544333222 2221 22221111000 112222222211 11 11222233
Q ss_pred HHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 014301 234 VELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN 313 (427)
Q Consensus 234 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (427)
.......+.|.|+++. |.+. .+.......++.+++++..|++.||+++|+ ....+..+..+........+
T Consensus 231 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~ 300 (392)
T PRK12382 231 GFAVIGTFVSLYFASK-GWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVK-------VAIVSLLVETVGLLLLWLAP 300 (392)
T ss_pred HHhHHHHHHHHHHHhc-CCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCe-------ehHHHHHHHHHHHHHHHHcc
Confidence 3445566777787664 6653 455566677788889999999999999987 33344444444444455556
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHH
Q 014301 314 SLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIV 391 (427)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 391 (427)
+.+...+..++.+++.+...+...+... +.++++||++.|+.+....+|..++|.+. ...+..+++..+...+++.++
T Consensus 301 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~ 380 (392)
T PRK12382 301 TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVL 380 (392)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 6666666777888888877777666555 56889999999999999999999999988 777778899999988887777
Q ss_pred HHHHHHhh
Q 014301 392 CTLPVSLI 399 (427)
Q Consensus 392 ~~~~~~~~ 399 (427)
+.+..+..
T Consensus 381 ~~~~~~~~ 388 (392)
T PRK12382 381 GIIVTILS 388 (392)
T ss_pred HHHHHHhh
Confidence 76665433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=279.57 Aligned_cols=379 Identities=13% Similarity=0.088 Sum_probs=276.2
Q ss_pred HHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHH
Q 014301 12 FSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQ 91 (427)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 91 (427)
+...++...++..+|.+.++++++..+.+++.+++.++.+++++++|+++||+|||+.+++++++.+++.++++++++++
T Consensus 177 ~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~ 256 (742)
T TIGR01299 177 MADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYG 256 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444556688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhh----ccCCcccchhHH
Q 014301 92 SFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITS----LNVGTHTAWRLA 166 (427)
Q Consensus 92 ~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~----~~~~~~~~wr~~ 166 (427)
.++++|++.|++.++. +....++.|++|+++|++.+++...+..+|..+++.++..+.....- .......+||+.
T Consensus 257 ~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l 336 (742)
T TIGR01299 257 FFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVF 336 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHH
Confidence 9999999999999986 88899999999999999999999999999988888776655432100 000113479999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC-----Ccc------------ccc----ccc------------hh-----h-hh--
Q 014301 167 FIVPSTFQALTAIMVLIYGQDLPSG-----NYK------------EFK----KTK------------TE-----S-RE-- 205 (427)
Q Consensus 167 f~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------------~~~----~~~------------~~-----~-~~-- 205 (427)
+++.+++.++..+..+++||. |+- +.+ +.+ ... ++ + +.
T Consensus 337 ~~i~~lp~ll~ll~~~~lPES-PrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (742)
T TIGR01299 337 VIVCAFPCVFAIGALTFMPES-PRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGT 415 (742)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-HHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccc
Confidence 999888777766655555543 320 000 000 000 00 0 00
Q ss_pred -------------hhhHHHHHhhhcC---chHHHHHHHHHHHHHHHhhhhhhhcchhhhc----c---------------
Q 014301 206 -------------EKFVHVLFNGLKN---YRGWILGLTYGFCFGVELTTDNIIAQYFYDR----F--------------- 250 (427)
Q Consensus 206 -------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~--------------- 250 (427)
...+..++++++. ++++.+++.++...+.++++..|+|..+.+. +
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (742)
T TIGR01299 416 WYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHF 495 (742)
T ss_pred hhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhcc
Confidence 0011123333332 3446677778888888999999999775331 0
Q ss_pred --CCcH--------------------------------------------------------------------------
Q 014301 251 --GVNL-------------------------------------------------------------------------- 254 (427)
Q Consensus 251 --g~s~-------------------------------------------------------------------------- 254 (427)
+++.
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (742)
T TIGR01299 496 SFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCS 575 (742)
T ss_pred ccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhcc
Confidence 0000
Q ss_pred -------------------HHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccch
Q 014301 255 -------------------QVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSL 315 (427)
Q Consensus 255 -------------------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (427)
........+..++.+++.++.|+++||+|||+ .+..+.++.++..+.+.+.++.
T Consensus 576 ~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~-------~l~~~~~lsai~~ll~~~~~s~ 648 (742)
T TIGR01299 576 FLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR-------MLAGSMVLSCISCFFLSFGNSE 648 (742)
T ss_pred ccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHHccH
Confidence 01233355667889999999999999999997 5666677777766666666666
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHH
Q 014301 316 WGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCT 393 (427)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 393 (427)
...++..++.+++.+..++....+.+|. |++.|++++|+.+..+.+|++++|++. ...+. +....+.+.+++.++++
T Consensus 649 ~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ 727 (742)
T TIGR01299 649 SAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGG 727 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 6566666677887777888888888865 888899999999999999999999988 34332 35566777777666666
Q ss_pred HHHHhh
Q 014301 394 LPVSLI 399 (427)
Q Consensus 394 ~~~~~~ 399 (427)
++.+.+
T Consensus 728 ll~~~L 733 (742)
T TIGR01299 728 LLALKL 733 (742)
T ss_pred HHHHhC
Confidence 655443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=268.41 Aligned_cols=363 Identities=14% Similarity=0.115 Sum_probs=287.2
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchh--hHHHHHHHHHHHhhcccc
Q 014301 29 RHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVS--SPQSFILVRFLVGFCLAN 106 (427)
Q Consensus 29 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 106 (427)
.+++++|+.|.+++.+.+..|+.+++++.|++.||+|.|+++..+.++.++++++...+. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457899999999999999999999999999999999999999999999999999998875 456789999999999997
Q ss_pred c-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHc
Q 014301 107 F-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYG 185 (427)
Q Consensus 107 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 185 (427)
. ++.....++|.|++||++..++..++..+|.+++-.+++.+.+. ..||+++|++.++.+++..++++.+.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--------~~GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--------SLGWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--------CCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 6 88888889999999999999999888888877666555555541 37999999999999999999998888
Q ss_pred CCCCCCCcccccccch--------hhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHH
Q 014301 186 QDLPSGNYKEFKKTKT--------ESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVA 257 (427)
Q Consensus 186 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~ 257 (427)
.|.|++++.-.++|.+ ++.+++..-.++++++++.+|...+..+......+.+..+.|.|+++.+|++..+.
T Consensus 217 ~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~ 296 (466)
T KOG2532|consen 217 SDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRET 296 (466)
T ss_pred cCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhh
Confidence 8888775432221111 00001123357889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccchhhhhhhccccc--cchhHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHhhhh-
Q 014301 258 GTIAASFGMANLFSRPMGGVISDRMGRRFG--IRGRLWGLWAVQTAAGLLCVLLGRVNS--LWGSVLVMCVFSVFVQAA- 332 (427)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~- 332 (427)
|++.+++.+...+..+++|.++||+.+|.. ...+...-.++....++.+..+.+.++ .+..++.+ ....+..+.
T Consensus 297 G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l-~~~~~~~g~~ 375 (466)
T KOG2532|consen 297 GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILL-TIAIGLSGFN 375 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHH-HHHHHHcccc
Confidence 999999999999999999999999987521 222345556666666666777666653 22233333 333333333
Q ss_pred hhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhc---ccccchhHHHHHHHHHHHHHHHHHhhc
Q 014301 333 GGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSG---SKFSKQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
.+.......+..|++.+..+|+.+....+.+.++|.+. ... +...|+..|.+.+++.+++.+...+..
T Consensus 376 ~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 376 ISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred hhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence 33333333354789999999999999999999999999 333 235789999999988888886655543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=263.29 Aligned_cols=359 Identities=16% Similarity=0.080 Sum_probs=259.1
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIV 81 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (427)
|.+...+...++..++.....+.+|.+.+++|.|+.+.|++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcc
Q 014301 82 LSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTH 160 (427)
Q Consensus 82 ~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~ 160 (427)
..+++++|++.++++|+++|++.+.. +.....+.+..++++|+++++..+...++|..+|+.+++.+.. .
T Consensus 86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---------~ 156 (381)
T PRK03633 86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST---------E 156 (381)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------c
Confidence 99999999999999999999999876 7777778888899999999999988888888777777766543 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhh
Q 014301 161 TAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240 (427)
Q Consensus 161 ~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (427)
..|+..+ ..+...... +...+.+.+ ++++++ + ++ ++ .++.+|||.++.................+
T Consensus 157 ~~~~~~~-~~~~~~~~~-~~~~~~~~~-~~~~~~--~-----~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (381)
T PRK03633 157 LMSVLPW-VTGLVLAAI-LPLLFTRIL-NQQAEN--H-----DS-TS----IWPMLKLRQARLGVNGCIISGIVLGSLYG 221 (381)
T ss_pred ccchHHH-HHHHHHHHH-HHHHHhccc-CCCCCC--C-----CC-CC----HHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 1222222 222221111 112222222 111110 0 00 11 23456677776554444444445555667
Q ss_pred hhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 014301 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVL 320 (427)
Q Consensus 241 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (427)
++|.|+++. |.++.+.+...+...++.+++++..|++.||+++|+ .+..+.....+...... .. .....
T Consensus 222 ~lp~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~-------~l~~~~~~~~~~~~~~~--~~-~~~~~ 290 (381)
T PRK03633 222 LMPLYLNHQ-GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL-------VLRVQVFVVILGSIAML--SQ-AAMAP 290 (381)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH-------HHHHHHHHHHHHHHHHh--hh-HHHHH
Confidence 889998764 999999999999999999999999999999999986 33333333333322222 11 22223
Q ss_pred HHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHH
Q 014301 321 VMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLP 395 (427)
Q Consensus 321 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (427)
...+.+.+.....|...+...+ .|+++++...+..+...++|..++|.+. ...+..+++..|...+.+.++..+.
T Consensus 291 ~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 291 ALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 4455666666667777776664 5666777777887888889999999998 7777778888888777766655433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=258.04 Aligned_cols=333 Identities=16% Similarity=0.099 Sum_probs=251.2
Q ss_pred HhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHH
Q 014301 13 SCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQS 92 (427)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (427)
+.........|.+|.+.+++|.|+.+.+++.+.+.+++.+++++.|+++||+|||+.+..+..+..++.+...+++|++.
T Consensus 19 ~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (394)
T PRK11652 19 VGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTV 98 (394)
T ss_pred HHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 33344556778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHH
Q 014301 93 FILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPS 171 (427)
Q Consensus 93 l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~ 171 (427)
+++.|++.|++.+.. +.......|.+++++|+++++..+.+..+|..+++.+++.+.+ ..+||+.|++.+
T Consensus 99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---------~~g~~~~f~~~~ 169 (394)
T PRK11652 99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT---------LFGWRACYLFLL 169 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccChHHHHHHHH
Confidence 999999999998876 6666778999999999999988866666666666655554443 679999999988
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccC
Q 014301 172 TFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFG 251 (427)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 251 (427)
+..++..+...+..+|.++++++ + ++.++.+++.+|||+++...+...........+....+.++++.+|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 239 (394)
T PRK11652 170 LLGAGVTFSMARWMPETRPADAR---R-------TRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLG 239 (394)
T ss_pred HHHHHHHHHHHHhCCccCccccc---h-------hHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcC
Confidence 77766555444443332221110 0 2234556677888888776665555555555566677888888789
Q ss_pred CcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHh
Q 014301 252 VNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR--VNSLWGSVLVMCVFSVFV 329 (427)
Q Consensus 252 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~ 329 (427)
.++.+.+.......++.+++..+.+++.||.+++. ...........+....... ..+.+.......+.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (394)
T PRK11652 240 LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------WQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA 313 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888887332 1222222222222222221 234555666677888888
Q ss_pred hhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 330 QAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+...+...+...+..++++|++.++.+....+|..+++.+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 314 GMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877766567899999999999999999999888
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=259.16 Aligned_cols=361 Identities=15% Similarity=0.073 Sum_probs=263.8
Q ss_pred HHHHHHHHhHhhhccccchhh-hhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHH
Q 014301 6 LAWLSLFSCFFSTFSIPPLIP-IIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSA 84 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (427)
......++.....+...+.+| .+++++|.|+.+.|++.+...+...+.+++.|+++||+|||+++..+..+.+++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~ 93 (400)
T PRK11646 14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM 93 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 344555666666666666665 4678999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccch
Q 014301 85 SLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAW 163 (427)
Q Consensus 85 ~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~w 163 (427)
.++++++.+++.|+++|++.+.. ++..+++.|++|+++|++++++.....++|..+|+.+++.+. ..+|
T Consensus 94 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~----------~~g~ 163 (400)
T PRK11646 94 AIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL----------QYDF 163 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhH
Confidence 99999999999999999998876 778888999999999999999999999999988888887775 3499
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhc
Q 014301 164 RLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIA 243 (427)
Q Consensus 164 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (427)
|+.|++.++..++..+...+..++.++++ ++ ++..+.+++.++||+++...+..+...........++|
T Consensus 164 ~~~f~~~~~~~~~~~i~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 232 (400)
T PRK11646 164 RLVCATGAVLFVLAAAFNAWLLPAYKLST----VR-------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLP 232 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccc----cc-------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999988777766555444433211110 00 12233456777888887666555444444444556789
Q ss_pred chhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhh-hccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 014301 244 QYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDR-MGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVM 322 (427)
Q Consensus 244 ~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (427)
.|+++..+ ++.+.+...+...+....+....+++.|| .+.++ ....+..+..+....+...++.+...+..
T Consensus 233 ~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (400)
T PRK11646 233 IMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH-------RLMAGLLIMSLSMFPIGMVSNLQQLFTLI 304 (400)
T ss_pred hhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 98877644 67788888877777666655555666654 44332 23334444444444555555665555566
Q ss_pred HHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccc----cchhHHHHHHHHHHHHHHH
Q 014301 323 CVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKF----SKQTSISVMGLMMIVCTLP 395 (427)
Q Consensus 323 ~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~ 395 (427)
.+.+.+.+...|...++..+ .|++++|+++|+.+....+|..++|.+. ...+.. .....+...++..+++.+.
T Consensus 305 ~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 305 CLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 67777777777777777774 5889999999999999999999999988 433332 2345555555555555444
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=271.52 Aligned_cols=381 Identities=12% Similarity=0.106 Sum_probs=247.5
Q ss_pred HHHHHHhHhhhccccchhhhhhhhc--------CCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHH
Q 014301 8 WLSLFSCFFSTFSIPPLIPIIRHDL--------NLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAP 79 (427)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 79 (427)
.+..+...++...+++..|.+++++ +.++.+.+++.+.+.++..++++++|+++||+|||++++.+..++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i 97 (479)
T PRK10077 18 TLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI 97 (479)
T ss_pred HHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445556666777888889888877 88899999999999999999999999999999999999999999998
Q ss_pred HHHHHhch------------hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHH
Q 014301 80 IVLSASLV------------SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMP 146 (427)
Q Consensus 80 ~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 146 (427)
+.+.++++ ++++.++++|+++|++.|.. +...++++|++|+++|++++++.+....+|..+++.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~ 177 (479)
T PRK10077 98 SALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNY 177 (479)
T ss_pred HHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887763 23577899999999999987 888999999999999999999998888777776665554
Q ss_pred HHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCc-ccccccch--------hhhhhhhHHHHHhhhc
Q 014301 147 LIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNY-KEFKKTKT--------ESREEKFVHVLFNGLK 217 (427)
Q Consensus 147 ~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~ 217 (427)
.+...... ...+..+||+.|++.+++.++..+..++++|+ |+... ++.+++.+ .++.+...+..++..+
T Consensus 178 ~~~~~~~~-~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (479)
T PRK10077 178 FIARSGDA-SWLNTDGWRYMFASEAIPALLFLMLLYFVPET-PRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLD 255 (479)
T ss_pred HHhccCcc-cccccCChHHHHHHHHHHHHHHHHHHHcCCCC-cHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 43321000 00125699999999888887766655555443 32100 00000000 0000001111111111
Q ss_pred -----CchHHHH---HHHHH--HHHH----HHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhc
Q 014301 218 -----NYRGWIL---GLTYG--FCFG----VELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMG 283 (427)
Q Consensus 218 -----~~~~~~~---~~~~~--~~~~----~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 283 (427)
.+..+.. .+... .... .......+.|.+.+ ..|.+...........++..+++.++.+++.||++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g 334 (479)
T PRK10077 256 HGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFG 334 (479)
T ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111111 01110 1111 11122334455554 45888777777777788889999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhh---ccch-HHHHHHHHHHHHHhhhh-hhhhhhccccc-CcCcceeeeehhcc
Q 014301 284 RRFGIRGRLWGLWAVQTAAGLLCVLLGR---VNSL-WGSVLVMCVFSVFVQAA-GGLTFGVVPFV-SKRSLGVISGMTGS 357 (427)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~~~g~~~g~~~~ 357 (427)
||+ ....+..+..+....+.. .+.. .......++++.+.+.. .+..+.+.+|. |+++|+++.|+.+.
T Consensus 335 ~r~-------~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~ 407 (479)
T PRK10077 335 RKP-------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA 407 (479)
T ss_pred ChH-------HHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHH
Confidence 986 344444444443333221 1211 12233344445444433 34556777765 77889999999999
Q ss_pred hhhhhhHHHHHHH-hhc------ccccchhHHHHHHHHHHHHHHHHHh
Q 014301 358 GGTVGAVVTQMLL-FSG------SKFSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 358 ~~~~g~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
..+++..+++.+. ... +..++...+...++..+++.++...
T Consensus 408 ~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (479)
T PRK10077 408 AQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455 (479)
T ss_pred HHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence 9999999987776 222 3566677777777666666555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=255.41 Aligned_cols=363 Identities=10% Similarity=0.049 Sum_probs=279.0
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHH----HHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVAS----ATLSLIT 77 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~----~~~~~~~ 77 (427)
|..+..++.++..+.......|.+|.+.+|+|.|..++|++.+.+.+...++++++|+++||+|||+.. ..+..+.
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~ 83 (382)
T TIGR00902 4 QPFRWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIF 83 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 445567777888888888899999999999999999999999999999999999999999999985443 2222222
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhcc
Q 014301 78 APIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLN 156 (427)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~ 156 (427)
.+ ..+..+++++.+++.|.++|.+.+.. +...++..|+ +++|++..+......++|..+++.+++.+.+
T Consensus 84 ~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~------ 153 (382)
T TIGR00902 84 AA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG------ 153 (382)
T ss_pred HH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH------
Confidence 22 24456789999999999999888876 6666666554 4788999999988888888777777666665
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHh
Q 014301 157 VGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVEL 236 (427)
Q Consensus 157 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (427)
+.|||..|.+.+....+ .+..+..+|+.+++++++ ++ + ++..+..++.+|||+++...+..++......
T Consensus 154 ---~~g~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~--~----~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~ 222 (382)
T TIGR00902 154 ---MFDEQNILAILTAGLAF-MLIGFLIKPTIPPKDAIP-ED--E----SQGDSAFIALLKNPMNLRFLAAVCLIQGAHA 222 (382)
T ss_pred ---HcChhHHHHHHHHHHHH-HHHHHHcCCCCCCCcccc-cc--c----cccchhHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 67999999887655332 223333433322221111 10 0 1112345678899999999988888888888
Q ss_pred hhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchH
Q 014301 237 TTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLW 316 (427)
Q Consensus 237 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (427)
...++.|.|+++ .|.++.+.+.......+..+++..+.+++.||+++|+ .+..+.....+........++.+
T Consensus 223 ~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~-------~l~~~~~~~~~~~~~~~~~~~~~ 294 (382)
T TIGR00902 223 AYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD-------LLLISAIACVGRWAIIGAIEAFP 294 (382)
T ss_pred HHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH-------HHHHHHHHHHHHHHHHHhHhhHH
Confidence 899999999976 6999999999999888999999999999999999887 56677777777777777778888
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcc-hhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHH
Q 014301 317 GSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGS-GGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTL 394 (427)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 394 (427)
..+...++-++..+...+....++++.|+++++++.++++. ...+|..++|.+. ...+..++ ..|...+.+.+++.+
T Consensus 295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 295 LIFLLQILHCGTFAVCHLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 88888899999999999998888886688889999999874 4568888999888 66666665 567777776665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=259.89 Aligned_cols=344 Identities=18% Similarity=0.209 Sum_probs=256.8
Q ss_pred HHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhh
Q 014301 10 SLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSS 89 (427)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 89 (427)
..+...++....++..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+.+++.++..++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 104 (398)
T TIGR00895 25 IMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN 104 (398)
T ss_pred HHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc
Confidence 33444445566788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHH
Q 014301 90 PQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFI 168 (427)
Q Consensus 90 ~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~ 168 (427)
++.+++.|++.|++.+.. +...+++.|++|+++|++++++......+|..+++.+++.+.+ ..+||+.|+
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~g~~~~~~ 175 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP---------VFGWRSLFY 175 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh---------cccceeehh
Confidence 999999999999999976 8888999999999999999999988888888877777766654 679999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccc-cc--------------------ccchhhh---hhhhHHHHHhhhcCchHHHH
Q 014301 169 VPSTFQALTAIMVLIYGQDLPSGNYKE-FK--------------------KTKTESR---EEKFVHVLFNGLKNYRGWIL 224 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 224 (427)
+.++..++..+..+...++.++...++ .+ .++++++ .++..+..++..+++..+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (398)
T TIGR00895 176 VGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLL 255 (398)
T ss_pred hhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHH
Confidence 987666665555544444332210000 00 0000000 01111112222223344445
Q ss_pred HHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHH
Q 014301 225 GLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGL 304 (427)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 304 (427)
.+..++..........+.| ++.++.|.++.+.+...+...++.+++.++.+++.||+++|+ ...........
T Consensus 256 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~ 327 (398)
T TIGR00895 256 WLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-------TALLLLLGAVF 327 (398)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-------HHHHHHHHHHH
Confidence 5555555566667777888 445567999999999999999999999999999999999874 22222222222
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 305 LCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
.........+.+......++.|++.+...+...++..+. |+++||++.|+.+....+|..++|.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~ 394 (398)
T TIGR00895 328 AVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394 (398)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 222222244566667777888999988888888888854 888899999999999999999999876
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=253.60 Aligned_cols=367 Identities=13% Similarity=0.083 Sum_probs=272.5
Q ss_pred hHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHH
Q 014301 4 FHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLS 83 (427)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (427)
+......+++..+.....++..|.+++++|.|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 44566677777777888899999999999999999999999999999999999999999999999999999999999888
Q ss_pred Hhc---hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhc-c--
Q 014301 84 ASL---VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSL-N-- 156 (427)
Q Consensus 84 ~~~---~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~-~-- 156 (427)
... .+|++.+++.|++.|+|.+.. ++.+.++.+..|+++|++.+++.+...++|..+|+.+++.+.....+. +
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 644 468999999999999999987 888899999999999999999999999999999998887775321000 0
Q ss_pred --------------CCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHH
Q 014301 157 --------------VGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGW 222 (427)
Q Consensus 157 --------------~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (427)
..+..+||++|++.+++.++..+...+.+ .|+.++++.++ ++..+..++.+|+|+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~--~p~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 235 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTK--MPALNHSDAKQ-------ISFSASLSRLARIRHYR 235 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccc-------ccchhhHHHHHhChhHH
Confidence 00135799999999887776654443332 23211111110 11223345677889998
Q ss_pred HHHHHHHHHHHHHhhhhhhhcchhhhcc-CCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHH
Q 014301 223 ILGLTYGFCFGVELTTDNIIAQYFYDRF-GVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTA 301 (427)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 301 (427)
...+..++....+....++++.|.++.. +.+...++...+.......+|+++++++.||+++|+ .+.....+
T Consensus 236 ~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~-------~l~i~~~~ 308 (410)
T TIGR00885 236 EGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK-------VLMAYAII 308 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-------HHHHHHHH
Confidence 8888888888888888899999986542 445555565666667788999999999999999886 45555555
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccc---
Q 014301 302 AGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKF--- 376 (427)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~--- 376 (427)
..+........++.. ....+.+.+++.+..+|..++...+. +++.+..+.++... .+|+++.|.+. ...|..
T Consensus 309 ~~~~~ll~~~~~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~ 385 (410)
T TIGR00885 309 GMALCLGSIFAGGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIA 385 (410)
T ss_pred HHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhccc
Confidence 555555555555433 35666778889999999998888854 54443333333333 39999999998 555532
Q ss_pred ---cchhHHHHHHHHH
Q 014301 377 ---SKQTSISVMGLMM 389 (427)
Q Consensus 377 ---~~~~~~~~~~~~~ 389 (427)
+.+.+|.+...+.
T Consensus 386 ~~~~~~~~~~~~~~~~ 401 (410)
T TIGR00885 386 AAPAVNTSFILPLLCF 401 (410)
T ss_pred ccCccchHHHHHHHHH
Confidence 4666666544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=252.32 Aligned_cols=365 Identities=10% Similarity=0.062 Sum_probs=245.1
Q ss_pred HHHHHHHHHhHhhhccccchhhh-hhhhcCCCcchhhHHHHHHHH-HHHHhhccccccccccCCchHHH-HHHHHHHHHH
Q 014301 5 HLAWLSLFSCFFSTFSIPPLIPI-IRHDLNLTDTDVGTAGMASFL-GSIFSRLAMGPVCDLLGPRVASA-TLSLITAPIV 81 (427)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~ 81 (427)
...++..++..+......|.+|. +++++|.|++++|++.+...+ +..++++++++ +||+||||.++ .+.+..+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~ 96 (393)
T PRK15011 18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC 96 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence 34556677777777777777776 678999999999999876644 66666666666 99999998754 5556666778
Q ss_pred HHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccc--cchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCC
Q 014301 82 LSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVG--LANGVSAGWANMGAGVSQLLMPLIFTAITSLNVG 158 (427)
Q Consensus 82 ~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~ 158 (427)
.+.+++++++.+++.+.+.|...+.. +...+++.|+.++++|. ...++.+...++|..+|+.++..+.+
T Consensus 97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~-------- 168 (393)
T PRK15011 97 TLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM-------- 168 (393)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------
Confidence 88889999998876655554444444 77777778877665552 33466666667777766666666554
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhh
Q 014301 159 THTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTT 238 (427)
Q Consensus 159 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (427)
+.|||..|++.++..++..+..+...||.+++++++. ++ . +. .++ +.+..+...............+
T Consensus 169 -~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~-~~----~~~--~~~~~~~~~~~~~~~~~~~~~~ 235 (393)
T PRK15011 169 -GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT-GT----L-EA----PRR--NRRDTLLLFVICTLMWGTNSLY 235 (393)
T ss_pred -hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc-cc----c-cc----ccc--ccccHHHHHHHHHHHHHHHHHH
Confidence 6799999999988887776666554444332221110 00 0 00 011 1122333333444444555566
Q ss_pred hhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHH
Q 014301 239 DNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGS 318 (427)
Q Consensus 239 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (427)
..+.|.|+++.+|+++.+.+.+.+...+..+++.++.|+++||+++|+ ..........+.+......++.+..
T Consensus 236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (393)
T PRK15011 236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF-------LMRVAAVAGVCFYAGMLMAHSPAIL 308 (393)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 678999998888999999998888777888889999999999999986 2222222222222223333455544
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHH
Q 014301 319 VLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVS 397 (427)
Q Consensus 319 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (427)
.+...+.++..+...+....+..|..|+++|+++++.+...++|..++|.+. ...+..+++..+....++.+++.+...
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555556666567799999999998999999999998 666767888888777777766665544
Q ss_pred h
Q 014301 398 L 398 (427)
Q Consensus 398 ~ 398 (427)
.
T Consensus 389 ~ 389 (393)
T PRK15011 389 R 389 (393)
T ss_pred h
Confidence 3
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=249.75 Aligned_cols=344 Identities=21% Similarity=0.244 Sum_probs=296.7
Q ss_pred HHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHh
Q 014301 6 LAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSAS 85 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 85 (427)
......+....+.....+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 34566777778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchh
Q 014301 86 LVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWR 164 (427)
Q Consensus 86 ~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr 164 (427)
.+++++.+++.|++.|++.+.. +...+++.|++|+|+|++.+++.+...++|..+++.+++.+.+ ..+||
T Consensus 83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~ 153 (352)
T cd06174 83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE---------SLGWR 153 (352)
T ss_pred HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH---------HhhHH
Confidence 9999999999999999999987 8888999999999999999999999999998888877776665 56899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcc
Q 014301 165 LAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQ 244 (427)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (427)
+.+++.++..++..+...+.+ |+++...+..++..........+.|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (352)
T cd06174 154 WLFLILAILGLLLALLLLFLL---------------------------------RLLLLLALAFFLLSFGYYGLLTYLPL 200 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999888877766665553 35666777777778888888899999
Q ss_pred hhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 014301 245 YFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCV 324 (427)
Q Consensus 245 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (427)
+..+.+|.++.+.+.......++..++.++.+++.||+++|+. ....+..+..+........++.+...+..++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 274 (352)
T cd06174 201 YLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL------LLLIGLLLAALGLLLLALAPSLALLLVALLL 274 (352)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9988889999999999999999999999999999999998851 3444555555555666666677778888889
Q ss_pred HHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHH
Q 014301 325 FSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVS 397 (427)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (427)
.+++.+...+...++..+. |+++|++.+|+.+...+++..++|.+. ...+..+++..+...+++.+++.+...
T Consensus 275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999998888865 778999999999999999999999999 677778899999888888777766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=266.32 Aligned_cols=351 Identities=14% Similarity=0.157 Sum_probs=251.4
Q ss_pred chhhhhhhhcCCC---cchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 014301 23 PLIPIIRHDLNLT---DTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFL 99 (427)
Q Consensus 23 ~~~~~i~~~~~~s---~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 99 (427)
+..|.+.+|+|++ +.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6788999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHH
Q 014301 100 VGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTA 178 (427)
Q Consensus 100 ~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~ 178 (427)
.|++.+.. +....++.|++|+++|+++.++......+|..+++.++..+ .+||+.|++.+++.++..
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------~~wr~~~~~~~i~~~~~~ 257 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI------------PDWRWLQLAVSLPTFLFF 257 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHH
Confidence 99999986 88889999999999999999998777777776665554332 259999999998888777
Q ss_pred HHHHHHcCCCCCC-----Ccccccc-------------cc-------hhh-hhhhhHHHHHhhhcCchHHHHHHHHHHHH
Q 014301 179 IMVLIYGQDLPSG-----NYKEFKK-------------TK-------TES-REEKFVHVLFNGLKNYRGWILGLTYGFCF 232 (427)
Q Consensus 179 ~~~~~~~~~~~~~-----~~~~~~~-------------~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (427)
+..++++|+ |+. +.++.++ .. +++ +++......++++++|+++...+.....+
T Consensus 258 ~~~~~~~es-p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (505)
T TIGR00898 258 LLSWFVPES-PRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLW 336 (505)
T ss_pred HHHHhcCCC-hHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHH
Confidence 766655543 321 0000000 00 000 00000124567788888877666555444
Q ss_pred HHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc
Q 014301 233 GVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV 312 (427)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (427)
+.........+.+. +..+.+.... ....++..+++.++.+++.||+|||+ .......+.++.++.+...
T Consensus 337 ~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~dr~grr~-------~~~~~~~~~~~~~l~~~~~ 405 (505)
T TIGR00898 337 FTTAFSYYGLVLDL-GNLGGNIYLD---LFISGLVELPAKLITLLLIDRLGRRY-------TMAASLLLAGVALLLLLFV 405 (505)
T ss_pred HHHHHHHHHHhccc-cccCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHc
Confidence 43333222233333 3345554333 33456677888899999999999987 4445555555554444444
Q ss_pred cch--HHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHHhhcccccchhHHHHHHHHH
Q 014301 313 NSL--WGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLLFSGSKFSKQTSISVMGLMM 389 (427)
Q Consensus 313 ~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (427)
++. +......++.+++.+..++..+.+.+|. |++.|+++.|+.+....+|+.++|.+.. .+..+....+.+.+++.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~ 484 (505)
T TIGR00898 406 PVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLA 484 (505)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHH
Confidence 332 4444555566677777777778888875 7888999999999999999999998875 33345556666777666
Q ss_pred HHHHHHHHh
Q 014301 390 IVCTLPVSL 398 (427)
Q Consensus 390 ~~~~~~~~~ 398 (427)
+++.+....
T Consensus 485 ~~~~~~~~~ 493 (505)
T TIGR00898 485 LLAGILTLF 493 (505)
T ss_pred HHHHHHHHc
Confidence 666655543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=250.99 Aligned_cols=365 Identities=13% Similarity=0.028 Sum_probs=270.6
Q ss_pred hhhHHHHHHHHHhHhhhccccchhh-hhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIP-IIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPI 80 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (427)
|++.......++...+.....+.+| .+++++|.|+.++|++.+.+.++..+++++.|+++||+|||++++.+.++.+++
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~ 86 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG 86 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence 3455555666777777777777666 466789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCc
Q 014301 81 VLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGT 159 (427)
Q Consensus 81 ~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~ 159 (427)
.+..++++|++.+++.|.+.|.+.+.. +...++..|..|+++|++++++.....++|..+|+.+++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~---------- 156 (395)
T PRK10054 87 FIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV---------- 156 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 999999999999999999988877765 777888899999999999999999999999988888877665
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH-HcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhh
Q 014301 160 HTAWRLAFIVPSTFQALTAIMVLI-YGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTT 238 (427)
Q Consensus 160 ~~~wr~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (427)
..+||..|++.++..++..+...+ ++|++|+++++ + + +. ...++.+|||+++...+..++........
T Consensus 157 ~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~---~---~---~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 225 (395)
T PRK10054 157 MQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE---T---G---SV--WSPSVLLQDKALLWFTCSGFLASFVSGAF 225 (395)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHhccccccccc---h---h---hh--hhhhhhccCceehHHHHHHHHHHHHHHHh
Confidence 348999999888777766554444 44433322111 0 0 11 11256788999988877776666665555
Q ss_pred hhhhcchhhh--ccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc-cch
Q 014301 239 DNIIAQYFYD--RFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV-NSL 315 (427)
Q Consensus 239 ~~~~~~~l~~--~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 315 (427)
..+.+.|+.+ +.+.+....+.......+.....+...+++.||.++|+ ....+..+..+........ ++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~ 298 (395)
T PRK10054 226 ASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP-------LMTAGTLCFVIGLVGFIFSGNSL 298 (395)
T ss_pred hhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh-------HHHHHHHHHHHHHHHHHHcchHH
Confidence 5666766643 33566667777777777777777788889999998886 3444444444444444332 455
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHH
Q 014301 316 WGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCT 393 (427)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 393 (427)
+...+...+.+++.....|...+...+ .|++.++++.+..+ ...+|..+||.+. ...+..++...+...+.+..+..
T Consensus 299 ~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~ 377 (395)
T PRK10054 299 LLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAW 377 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence 555666778888887777777777764 47788999888654 5668999999999 77777788777766555444444
Q ss_pred HH
Q 014301 394 LP 395 (427)
Q Consensus 394 ~~ 395 (427)
+.
T Consensus 378 ~~ 379 (395)
T PRK10054 378 LL 379 (395)
T ss_pred HH
Confidence 33
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=255.43 Aligned_cols=379 Identities=11% Similarity=0.048 Sum_probs=267.4
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhcccccccccc-----CCchH-HHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLL-----GPRVA-SATLSL 75 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~ 75 (427)
|+....+...+..++.....++.+|...++.|.|.+++|.+ +.....+ ++.+++|+++||+ ||||. ++.+.+
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i 89 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQL 89 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence 44555666677777888888999999999999999999997 4444444 5899999999999 99986 557777
Q ss_pred HHHHHHHHHhch---hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 014301 76 ITAPIVLSASLV---SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTA 151 (427)
Q Consensus 76 ~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 151 (427)
..+++....++. ++++.+.+.+++.|++.+.. ++..+++.|++|+++|+++.++...+..+|..+++.++..+.+.
T Consensus 90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~ 169 (491)
T PRK11010 90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR 169 (491)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777665 47889999999999998876 88889999999999999999999888888887777666555530
Q ss_pred HhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHH
Q 014301 152 ITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFC 231 (427)
Q Consensus 152 l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (427)
..|||..|++.++..++..+..++.+ |+++.++ + ++ + .+ ++..+.+++.+++++.|...+..++.
T Consensus 170 --------~~GWr~~f~i~a~l~ll~~l~~~~~~-e~~~~~~-~-~~-~--~~-~~~~~~l~~~~~~~~~~~~ll~~~l~ 234 (491)
T PRK11010 170 --------YLGWQGMYWLMAALLIPCIIATLLAP-EPTDTIP-V-PK-T--LE-QAVVAPLRDFFGRNNAWLILLLIVLY 234 (491)
T ss_pred --------ccCHHHHHHHHHHHHHHHHHHHHhcC-CCccccc-c-cc-c--hh-hhHHHHHHHHHcCcCHHHHHHHHHHH
Confidence 25999999999988777655555443 3222111 1 10 0 01 12234456677777777666666665
Q ss_pred HHHHhhhhhhhcchhhhccCCcHHHHHHHHH-HHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHh
Q 014301 232 FGVELTTDNIIAQYFYDRFGVNLQVAGTIAA-SFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLG 310 (427)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (427)
.........+.++|+.+.+|+++.+.+.... ...++.+++.+++|++.||+++|+ ..........+..+.+..+.
T Consensus 235 ~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~----~l~i~~~l~~l~~l~~~~l~ 310 (491)
T PRK11010 235 KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR----ALMIFGILQGVSNAGYWLLS 310 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 5666666778888887778999999999874 556799999999999999999875 11111111112222222222
Q ss_pred hc-cchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHH
Q 014301 311 RV-NSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGL 387 (427)
Q Consensus 311 ~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 387 (427)
.. ++.+......++..+..+...+...++..+ .+++.+++..|+.+....+|..+++.+. ...+..+|+..|...++
T Consensus 311 ~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~ 390 (491)
T PRK11010 311 ITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVA 390 (491)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 22 343333334444344444444555565554 4677788999999999999988777777 66667789998988888
Q ss_pred HHHHHHHHHHhhcc
Q 014301 388 MMIVCTLPVSLIYF 401 (427)
Q Consensus 388 ~~~~~~~~~~~~~~ 401 (427)
+.+.+.+.....+.
T Consensus 391 ~~l~~l~~~~~~~~ 404 (491)
T PRK11010 391 AAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHh
Confidence 88887777665543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=267.00 Aligned_cols=372 Identities=13% Similarity=0.092 Sum_probs=248.6
Q ss_pred hHhhhccccchhhhhhhhcCCC--------cchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHh
Q 014301 14 CFFSTFSIPPLIPIIRHDLNLT--------DTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSAS 85 (427)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 85 (427)
..++.....+..|.+.++++.+ ..+.+++.+++.++..++++++|+++||+|||++++.+.++..++.+++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 119 (481)
T TIGR00879 40 FGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMG 119 (481)
T ss_pred cccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3345566888889888888777 89999999999999999999999999999999999999999999998885
Q ss_pred ch---hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCccc
Q 014301 86 LV---SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHT 161 (427)
Q Consensus 86 ~~---~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~ 161 (427)
+. .+++.+++.|+++|++.+.. +....++.|++|+++|++++++.+...++|..+++.++ ....... +..
T Consensus 120 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~-----~~~ 193 (481)
T TIGR00879 120 LAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG-SGKVSLN-----NTL 193 (481)
T ss_pred HhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH-HHhhcCC-----CCc
Confidence 54 45668999999999999987 77888999999999999999999888888887777766 0001111 256
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCC----CCCccccc---------ccchhhhhh-----------------hhHHH
Q 014301 162 AWRLAFIVPSTFQALTAIMVLIYGQDLP----SGNYKEFK---------KTKTESREE-----------------KFVHV 211 (427)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------~~~~~~~~~-----------------~~~~~ 211 (427)
+||+.|++.++..++..+..++++|+++ ++++++.+ ++.+.+..+ +.+..
T Consensus 194 ~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (481)
T TIGR00879 194 GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGS 273 (481)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHH
Confidence 9999999977666655555555544321 01100000 000000000 00011
Q ss_pred HHhhhc---CchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhcccccc
Q 014301 212 LFNGLK---NYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGI 288 (427)
Q Consensus 212 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 288 (427)
+++..+ .+.++...+..+...........+.|.+++ +.|++..+.+.......++.+++.++.+++.||++||+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-- 350 (481)
T TIGR00879 274 LFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP-- 350 (481)
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--
Confidence 122212 122222222222222222333445555554 45999888888888899999999999999999999986
Q ss_pred chhHHHHHHHHHHHHHHHHHHh---h--ccc-----hHHHHHHHHHHHHHhhhhh-hhhhhccccc-CcCcceeeeehhc
Q 014301 289 RGRLWGLWAVQTAAGLLCVLLG---R--VNS-----LWGSVLVMCVFSVFVQAAG-GLTFGVVPFV-SKRSLGVISGMTG 356 (427)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~---~--~~~-----~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~-~~~~~g~~~g~~~ 356 (427)
....+..+..+.+.... . .++ .........++..+.+... +....+..|. |++.|+++.|+.+
T Consensus 351 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 425 (481)
T TIGR00879 351 -----LLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAV 425 (481)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHH
Confidence 33333333333333332 1 111 2223333334444444333 4445555665 7778999999999
Q ss_pred chhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHHhh
Q 014301 357 SGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 357 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (427)
...++|++++|.+. ...+..++...|...+++.+++.+.....
T Consensus 426 ~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 469 (481)
T TIGR00879 426 AANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFF 469 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHhee
Confidence 99999999999988 66666778888888887777776665443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=252.67 Aligned_cols=359 Identities=13% Similarity=0.092 Sum_probs=270.9
Q ss_pred hHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHH
Q 014301 4 FHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLS 83 (427)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (427)
....+++..++..+.+.+....+.+++.+|+++++.|++.+.+.+.+.+++|++|+++||+.||+++.+|..++.++.++
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~ 114 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA 114 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHH
Confidence 44567778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccc
Q 014301 84 ASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTA 162 (427)
Q Consensus 84 ~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~ 162 (427)
++++..||++.++|.+.|+|.+.+ +.++++++|.+|.++|++++++++...++|..+|.+.+..+++. ...
T Consensus 115 ~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~--------~~~ 186 (493)
T KOG1330|consen 115 SGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL--------TFW 186 (493)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC--------ccc
Confidence 999999999999999999999988 99999999999999999999999999999999888888777652 334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchh-hhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhh
Q 014301 163 WRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTE-SREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNI 241 (427)
Q Consensus 163 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (427)
|||.|+..+++++++.++.+++.+|+++..+++.+.+.+. ....+.+++.+...|++.+....+......+...++.-|
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww 266 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWW 266 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchh
Confidence 9999999999999999998888777555433333332221 112566778888888888877777777777777777777
Q ss_pred hcchhhh---ccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHH----HHHHHHHHHHHHHHHhhc-c
Q 014301 242 IAQYFYD---RFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWG----LWAVQTAAGLLCVLLGRV-N 313 (427)
Q Consensus 242 ~~~~l~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~ 313 (427)
.|.+... ..|.+.++..++..+...++.+|.+.+|.++||+.++.+...+... ...+...+...+.+.... .
T Consensus 267 ~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~ 346 (493)
T KOG1330|consen 267 APAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS 346 (493)
T ss_pred hhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh
Confidence 7776543 3356666777788888889999999999999997664332112211 112222222222222222 2
Q ss_pred chHHHHHHHHHHHHHhhhh-hhhhhhcccc-cCcCcceeeeehhcchhh-hhhHHHHHHH
Q 014301 314 SLWGSVLVMCVFSVFVQAA-GGLTFGVVPF-VSKRSLGVISGMTGSGGT-VGAVVTQMLL 370 (427)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~-~~~~~~g~~~g~~~~~~~-~g~~~~~~~~ 370 (427)
+.....+.+++.|...... +.....+..+ +||++|.+++++...+.. +|.+-+|++.
T Consensus 347 ~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~iv 406 (493)
T KOG1330|consen 347 SSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIV 406 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCccee
Confidence 2223333344444444333 3333344444 499999999999887665 6667777555
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=252.62 Aligned_cols=377 Identities=16% Similarity=0.101 Sum_probs=255.2
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhh-hhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPII-RHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPI 80 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (427)
+.++..++..++..+......+.+|.. .+++|+|+.+.|++.+++.++..+++++.|+++||+|||++++.+..+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL 89 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 345666677777777777667777654 5569999999999999999999999999999999999999998877665544
Q ss_pred HHHHh---chhh-----HHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 014301 81 VLSAS---LVSS-----PQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTA 151 (427)
Q Consensus 81 ~~~~~---~~~~-----~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 151 (427)
..... .++. .....++++..|.+.... +....+..+ . ++++++.++......++|..+++.+++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~-- 165 (420)
T PRK09528 90 FGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILF-- 165 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHH--
Confidence 33211 1111 111223333344333322 222233222 2 346777888888888888888877776664
Q ss_pred HhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHH
Q 014301 152 ITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFC 231 (427)
Q Consensus 152 l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (427)
..+|++.|++.++.+++..+..+..+++++++++++.+ +.++++ +...+..++.+|||+++...+.....
T Consensus 166 --------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~~~~~l~l~~~~~ 235 (420)
T PRK09528 166 --------NINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA-LGANAS-AVSLKDALALLKLPKFWFLVLYVIGV 235 (420)
T ss_pred --------hcCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc-hhcccc-cccHHHHHHHccCCCeEeehHHHHHH
Confidence 34899999998888777666665555443332211111 111111 22234456788899887766655554
Q ss_pred HHHHhhhhhhhcchhhhcc---CCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHH
Q 014301 232 FGVELTTDNIIAQYFYDRF---GVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVL 308 (427)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (427)
.........+.|.|+.+.+ +.+..+.+...+...+..+++.++.|++.||+++|+ ....+..+..+....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~l~~~~~~l 308 (420)
T PRK09528 236 ACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN-------ALLLAGTIMAVRIIG 308 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHH
Confidence 4444555556777765432 566678889888888899999999999999999997 444444555555555
Q ss_pred HhhccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeeh-hcchhhhhhHHHHHHH-hhcccccchhHHHHH
Q 014301 309 LGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGM-TGSGGTVGAVVTQMLL-FSGSKFSKQTSISVM 385 (427)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~-~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~ 385 (427)
....++.+..+....+.+.+.+...+....+.+ +.|++.+++..+. .+....+|..++|.+. ...+..+++..|...
T Consensus 309 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~ 388 (420)
T PRK09528 309 SGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL 388 (420)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 556667776666677777777666666666666 4688888888776 5677889999999998 777778899999988
Q ss_pred HHHHHHHHHHHHhh
Q 014301 386 GLMMIVCTLPVSLI 399 (427)
Q Consensus 386 ~~~~~~~~~~~~~~ 399 (427)
+++.++..+.....
T Consensus 389 ~~~~~i~~~~~~~~ 402 (420)
T PRK09528 389 GGIVLLFTLISVFT 402 (420)
T ss_pred HHHHHHHHHHHHHH
Confidence 88776666555443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=252.59 Aligned_cols=361 Identities=14% Similarity=0.077 Sum_probs=252.5
Q ss_pred HHhHhhhccccchhhhhhhhcC--CCcchhhHHHHH-----HHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHH
Q 014301 12 FSCFFSTFSIPPLIPIIRHDLN--LTDTDVGTAGMA-----SFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSA 84 (427)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~~~~~--~s~~~~g~~~s~-----~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (427)
+.+.++++.+++..+.+.+++. .++++.+...+. ..++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888887754 455666665543 333445689999999999999999999999999999999
Q ss_pred hchhhHH--------HHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhc
Q 014301 85 SLVSSPQ--------SFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSL 155 (427)
Q Consensus 85 ~~~~~~~--------~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~ 155 (427)
+++++++ .+++.|+++|++.+.. +....++.|++++++|++..++.+....+|..+++.++..+...+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999875 4889999999999976 888899999999999999999998888888877777766554322110
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCch--HHHHHHHHHHHHH
Q 014301 156 NVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYR--GWILGLTYGFCFG 233 (427)
Q Consensus 156 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 233 (427)
. .+..+||+.|++.++..++........+|+ ++.++++.++ ++ ..+..++.+++++ ++...+..++...
T Consensus 163 ~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (394)
T TIGR00883 163 A-LLEWGWRIPFLVSAVLVLIGLYLRRNLEET-PVFEKAQEKH---KK----KRGPIRETLTKHRKPFLLGLGLVIATTT 233 (394)
T ss_pred H-hhccchHHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHhcc---cc----ccCCHHHHHHhchHHHHHHHHHHHHHHH
Confidence 0 015689999998777665544333333322 2111111010 01 1112233344444 6666666666667
Q ss_pred HHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHH-HHHH--HH-HH
Q 014301 234 VELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTA-AGLL--CV-LL 309 (427)
Q Consensus 234 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~--~~-~~ 309 (427)
.......+.|.|+++++|.++.+.+.......+...++.++.+++.||++||+ .......+ .... .. ..
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~ 306 (394)
T TIGR00883 234 TFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP-------VLIIFTVLAALLAVPLLMAL 306 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 77778889999998888999999999999999999999999999999999886 22211111 1111 11 11
Q ss_pred hhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhc-chhhhhhHHHHHHH-hhccccc-chhHHHHH
Q 014301 310 GRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTG-SGGTVGAVVTQMLL-FSGSKFS-KQTSISVM 385 (427)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~-~~~~~g~~~~~~~~-~~~~~~~-~~~~~~~~ 385 (427)
...++.+......++.+++.+...+...+..+|. |+++|+++.|+.. ....+|..++|.+. ...+..+ +...+...
T Consensus 307 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~ 386 (394)
T TIGR00883 307 LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL 386 (394)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence 2223555556666777888878888888888864 7888999999854 44567888999888 5555555 55555444
Q ss_pred HHH
Q 014301 386 GLM 388 (427)
Q Consensus 386 ~~~ 388 (427)
.++
T Consensus 387 ~~~ 389 (394)
T TIGR00883 387 AAL 389 (394)
T ss_pred HHH
Confidence 443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-32 Score=259.97 Aligned_cols=382 Identities=13% Similarity=0.100 Sum_probs=247.9
Q ss_pred HHHHHHHHhHhhhccccchhhhhhhhc-----CCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHH
Q 014301 6 LAWLSLFSCFFSTFSIPPLIPIIRHDL-----NLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPI 80 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (427)
...+..+...++....+...|.+.+++ +.++.+.+++.+.+.++..++++++|+++||+|||+++..+.++..++
T Consensus 20 ~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~ 99 (502)
T TIGR00887 20 IAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIA 99 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 344556677777778888888887642 345667899999999999999999999999999999999999999999
Q ss_pred HHHHhchhh------HHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 014301 81 VLSASLVSS------PQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAIT 153 (427)
Q Consensus 81 ~~~~~~~~~------~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~ 153 (427)
.++++++++ ++.++++|+++|++.+.. +....+++|++|+++|+++.++.+....+|..+++.++..+...+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 179 (502)
T TIGR00887 100 TVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFK 179 (502)
T ss_pred HHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999888765 789999999999999987 8889999999999999999999999999999888888766544321
Q ss_pred hc-cC-------------CcccchhHHHHHHHHHHHHHHHHHHHHcCCCCC---CCcc-c-c------------cccchh
Q 014301 154 SL-NV-------------GTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPS---GNYK-E-F------------KKTKTE 202 (427)
Q Consensus 154 ~~-~~-------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~-~------------~~~~~~ 202 (427)
+. .. ....+||+.+.+.++++++..+..+++||++.- ++++ + . +++.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 259 (502)
T TIGR00887 180 HSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDE 259 (502)
T ss_pred cccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCccc
Confidence 10 00 012489999998888887776666666654220 1110 0 0 000000
Q ss_pred -----hhhhhhHHHHHhhhcC---chHHH----HHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHH-----------H
Q 014301 203 -----SREEKFVHVLFNGLKN---YRGWI----LGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAG-----------T 259 (427)
Q Consensus 203 -----~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~-----------~ 259 (427)
++++.....+++.+++ ++.+. .....+.....+++...+.|.++++ .|+++.+.+ .
T Consensus 260 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~ 338 (502)
T TIGR00887 260 VEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAV 338 (502)
T ss_pred ccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHH
Confidence 0000011233444332 22211 2222333344556667778888865 477643211 1
Q ss_pred -HHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHH-hhhhhh
Q 014301 260 -IAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN---SLWGSVLVMCVFSVF-VQAAGG 334 (427)
Q Consensus 260 -~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~-~~~~~~ 334 (427)
......++.+++.++.+++.||+|||+ ....+..+..+.+..+.... +.........+.... .....+
T Consensus 339 ~~~~~~~~~~i~g~~~~~~l~dr~gRR~-------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (502)
T TIGR00887 339 GNLIIALAGTVPGYWVTVFLVDIIGRKP-------IQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNA 411 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchh-------HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCc
Confidence 223344566778889999999999997 33333333333332222111 111111112222222 222344
Q ss_pred hhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhccc----------ccchhHHHHHHHHHHHHHHH
Q 014301 335 LTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSK----------FSKQTSISVMGLMMIVCTLP 395 (427)
Q Consensus 335 ~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~ 395 (427)
..+.+.+|. |++.|+++.|+.+..+.++++++|.+. ...+. .++...+.+.+++.+++.+.
T Consensus 412 ~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 412 TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 556666776 778899999999999999999999988 44332 23445666666666665543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-31 Score=245.36 Aligned_cols=352 Identities=13% Similarity=0.064 Sum_probs=258.8
Q ss_pred HHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCc----hHHHHHHHHHHHHHHHHhc
Q 014301 11 LFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPR----VASATLSLITAPIVLSASL 86 (427)
Q Consensus 11 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~~~~~~ 86 (427)
++..+.......|.+|.+.+|+|.|..++|++.+++.++..++++++|+++||+||| +.+.+..... .......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 555566678889999999999999999999999999999999999999999999994 3333222222 2233445
Q ss_pred hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhH
Q 014301 87 VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRL 165 (427)
Q Consensus 87 ~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~ 165 (427)
++++|.+++.|++.|++.+.. +...++..++ +++|+++.+......++|..+||.+++.+.+ +.|||.
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~---------~~g~~~ 159 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS---------WFGEQA 159 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH---------HcChhH
Confidence 688999999999999998876 6666666766 4568888998888888888777777777665 679999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcch
Q 014301 166 AFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQY 245 (427)
Q Consensus 166 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (427)
.|++.++..++..+...+.++++|++++ ++ + + ++..+.+++.+|+|+++...+..++.........++.|.|
T Consensus 160 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~---~-~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 231 (382)
T PRK11128 160 ILWILTAGVASMLLGQLLRPTIMPQGES---RQ-Q---E-SAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIY 231 (382)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCcccc---cc-c---c-ccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 9998776554443333322222111111 11 0 0 1112346788899999988887777777777778888999
Q ss_pred hhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 014301 246 FYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVF 325 (427)
Q Consensus 246 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (427)
+++ .|.++.+.+.+.+...+..++...+.+++.||+++|+ .+..+..+..+........++.+..++..++.
T Consensus 232 ~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 303 (382)
T PRK11128 232 WQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD-------LLLLSAICGVVRWGLMGSTTALPWLIVIQILH 303 (382)
T ss_pred HHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 865 6999999999999888899999999999999999886 45555555555555566667777777888888
Q ss_pred HHHhhhhhhhhhhcccccCcCcceeeeehhcch-hhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHH
Q 014301 326 SVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSG-GTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVC 392 (427)
Q Consensus 326 g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 392 (427)
|++.+...+....+..+.+++++++..+..+.. ...|..++|.+. ...+..+. ..+...+++.+++
T Consensus 304 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 304 CGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 998888888887777766777778888887644 457778888888 66666665 4555555555444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=246.38 Aligned_cols=328 Identities=15% Similarity=0.054 Sum_probs=244.1
Q ss_pred hccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 014301 18 TFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVR 97 (427)
Q Consensus 18 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 97 (427)
....++.+|.+++++|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+.+ .+++++.+++.|
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 94 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT 94 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 3557899999999999999999999999999999999999999999999999999999988888877 778999999999
Q ss_pred HHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHH
Q 014301 98 FLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQAL 176 (427)
Q Consensus 98 ~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~ 176 (427)
++.|++.+.. +.....+.|+++ ++|++++++.+...++|..+++.+++.+.+.. ..+||+.|...++..++
T Consensus 95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-------~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS-------GGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHH
Confidence 9999999875 667777888886 68999999998888888888887776665421 12499999877765444
Q ss_pred HHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHH
Q 014301 177 TAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQV 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~ 256 (427)
... .+.++.++++++++ +. + ....++.+|||.++...+..++....++...+++|.|+++ .|.++.+
T Consensus 167 ~~~--~~~~~~~~~~~~~~-~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~ 233 (355)
T TIGR00896 167 ALL--AWIPQVRRRVAANQ-TT----T-----RLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAAT 233 (355)
T ss_pred HHH--HHhhhhccccCCCC-CC----C-----CCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH
Confidence 322 23333221111100 00 0 0112456678888877777777777778888899999976 5999999
Q ss_pred HHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhh
Q 014301 257 AGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLT 336 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (427)
.+...+...++.++++++.|++.||+++|+ + .......+..++...+...++.... ....+.|++.+...+..
T Consensus 234 ~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~ 306 (355)
T TIGR00896 234 AGSLLALMQLAQAASALLIPALARRVKDQR----G--IVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFPLA 306 (355)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccch----H--HHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHH
Confidence 999999999999999999999999995543 1 2333333333333333333322222 24567788888888776
Q ss_pred hhccc-cc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcc
Q 014301 337 FGVVP-FV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGS 374 (427)
Q Consensus 337 ~~~~~-~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~ 374 (427)
.+... +. +++++++..++.+..++++..++|.+. ...+
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 307 LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 44 456678889999999999999999888 4433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=247.43 Aligned_cols=381 Identities=15% Similarity=0.132 Sum_probs=307.1
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIV 81 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (427)
|+|+..|...+++.++..+.....+.+..+..-|+..++++..+..+...+.++++|.++||++|||+++.+.++.++..
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA 89 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 67899999999999999999999999888888899999999999999999999999999999999999999998876555
Q ss_pred HHHhch-----hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhc
Q 014301 82 LSASLV-----SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSL 155 (427)
Q Consensus 82 ~~~~~~-----~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~ 155 (427)
+..++. .+.+.+++.-++.|++.+.. |+.++.+.|..|+++...++++.+...++...+||.+++.+..
T Consensus 90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva----- 164 (524)
T PF05977_consen 90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA----- 164 (524)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH-----
Confidence 444332 47899999999999999987 9999999999999999999999999999999999999888776
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHH
Q 014301 156 NVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVE 235 (427)
Q Consensus 156 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (427)
..|-.++|.+.++..++........+++.+++ +.++ ++-. ++.++.++...++|......+..++.....
T Consensus 165 ----~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~---~~~~--e~~~-~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~ 234 (524)
T PF05977_consen 165 ----FFGAAAAFLINALSFLISILALLRWKPPPPPS---SLPR--ERFF-SALREGLRYVRSSPPLRSVLLRSFLFNLFA 234 (524)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHcccccccc---ccch--hhhh-hhHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 44778889888876666554444443322111 1111 1111 455666777777887766666555555555
Q ss_pred hhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccch
Q 014301 236 LTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSL 315 (427)
Q Consensus 236 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (427)
......+|.+.++.+|.++...|++.+..+++.++|.++.+++.+|+++++ .+..+....++.+..+.+.++.
T Consensus 235 ~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~-------lv~~~~~~~a~~~~~lal~~~~ 307 (524)
T PF05977_consen 235 SAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR-------LVLLASLLFALALLLLALSPSF 307 (524)
T ss_pred hHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch-------hhHHHHHHHHHHHHHHhcchHH
Confidence 566677899999999999999999999999999999999999988888765 4555666667777777888888
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHH
Q 014301 316 WGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCT 393 (427)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 393 (427)
+...+.+++.|++.........+..+ ..|++.||++++++++....+..+|..+. ...+..+....+.+.++..+++.
T Consensus 308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 308 WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 88888888999998888877777777 67999999999999999999999999888 77888888888888777776666
Q ss_pred HHHHhhccccC
Q 014301 394 LPVSLIYFPQW 404 (427)
Q Consensus 394 ~~~~~~~~~~~ 404 (427)
++......++.
T Consensus 388 ~~~~~~~l~~~ 398 (524)
T PF05977_consen 388 LIALRFPLRQG 398 (524)
T ss_pred HHHHHhcCccc
Confidence 66555444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.4e-32 Score=251.13 Aligned_cols=352 Identities=16% Similarity=0.191 Sum_probs=269.7
Q ss_pred hhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhcc
Q 014301 25 IPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCL 104 (427)
Q Consensus 25 ~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 104 (427)
+-.+.+|.+....+.+.+.+++.++++++++++|.+.||++..+.+....+.+++..++....+|++.+++.|++.|+.+
T Consensus 69 l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 69 LSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE 148 (495)
T ss_pred HcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33466899999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred ccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHH
Q 014301 105 ANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLI 183 (427)
Q Consensus 105 ~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 183 (427)
++. |+...+++.|+.++||++.++++.+..++|.++|+++++.+.. + .+.....||||.|++.++++++..++.++
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~-~--~~~~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK-L--NGSGGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh-h--cCCCCcCCceeehhHHHHHHHHHHheEEE
Confidence 987 8888899999999999999999999999999888888877544 1 11123679999999999999999988888
Q ss_pred HcCCCCCCCccccccc-----------ch-hhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccC
Q 014301 184 YGQDLPSGNYKEFKKT-----------KT-ESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFG 251 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 251 (427)
..|+.|++.+-..++| .. ...++..+..+++.+++|++|.+.+..++.....+++.+|+|.|+.+..|
T Consensus 226 ~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~ 305 (495)
T KOG2533|consen 226 FLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGG 305 (495)
T ss_pred EecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCC
Confidence 7777776431111110 00 00111345778899999999999999999999999999999999998668
Q ss_pred CcHHHHHHHHHHHHHhhhcccccchhhhhhhc----cccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 014301 252 VNLQVAGTIAASFGMANLFSRPMGGVISDRMG----RRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSV 327 (427)
Q Consensus 252 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 327 (427)
+|..+++.+.....++++++.++.|+++||.+ +| ........+...++...+......+...........
T Consensus 306 ~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~------~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~ 379 (495)
T KOG2533|consen 306 YSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARR------LLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPY 379 (495)
T ss_pred cChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcch
Confidence 99999999999999999999999999999953 33 223333333333343334333434444444444455
Q ss_pred Hhhhhhhhhhhcccc-c-CcCcceeeeehhcchhhhhhHHHHHHH--hhcccccchhHHHHH
Q 014301 328 FVQAAGGLTFGVVPF-V-SKRSLGVISGMTGSGGTVGAVVTQMLL--FSGSKFSKQTSISVM 385 (427)
Q Consensus 328 ~~~~~~~~~~~~~~~-~-~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~ 385 (427)
+.....+......++ . +..++-+..+......+.++.++|.+. .....+.+...+...
T Consensus 380 ~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 380 GLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred hhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 555556666666663 3 334455556666667778888888877 445556777777333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.9e-30 Score=238.88 Aligned_cols=374 Identities=15% Similarity=0.114 Sum_probs=260.7
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhh-hhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPII-RHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPI 80 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (427)
|.++......++.+.......|.+|.+ .+++|.|+.+.|++.+.+.++..+++++.|+++||+|||+.++.+....+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL 81 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 344555556677777777777888765 5679999999999999999999999999999999999999998877766544
Q ss_pred HHHH---hch-----hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 014301 81 VLSA---SLV-----SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTA 151 (427)
Q Consensus 81 ~~~~---~~~-----~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 151 (427)
.... .+. +.+..+++.|++.|++.+.. +....+..|.. +++++..+......++|..+|+.+++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~-- 157 (396)
T TIGR00882 82 FAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILF-- 157 (396)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhh--
Confidence 3322 222 22344567788889888865 66666666643 33456667777777888887777776654
Q ss_pred HhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHH
Q 014301 152 ITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFC 231 (427)
Q Consensus 152 l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (427)
..+||..|++.++..++..+..+...+++|++++.+...+.++ + ++..+..++.+|||+++...+..+..
T Consensus 158 --------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~l~~~~~ 227 (396)
T TIGR00882 158 --------SIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANA-S-AFSLKLALELFRQRKFWMFVLYVVGV 227 (396)
T ss_pred --------ccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhccccccc-C-CCCHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3599999999988888776666555554433221111000011 1 11223467788999988776666555
Q ss_pred HHHHhhhhhhhcchhhhcc---CCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHH
Q 014301 232 FGVELTTDNIIAQYFYDRF---GVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVL 308 (427)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (427)
.........+.+.|+.+.+ +.+....+...+...+...++....+++.||+++|+ ....+..+.++....
T Consensus 228 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~-------~l~~~~~l~~l~~~~ 300 (396)
T TIGR00882 228 ACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN-------ALLIAGTIMSVRIIG 300 (396)
T ss_pred HHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------hHHHHHHHHHHHHHH
Confidence 5555556567777776654 556677888888888888999999999999999997 444444444444444
Q ss_pred HhhccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeeh-hcchhhhhhHHHHHHH-hhcccccchhHHHHH
Q 014301 309 LGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGM-TGSGGTVGAVVTQMLL-FSGSKFSKQTSISVM 385 (427)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~-~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~ 385 (427)
....++.+..++..++.+++..........+.. +.+++.+++..+. .+....+|+.++|.+. ...+..+++..|...
T Consensus 301 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~ 380 (396)
T TIGR00882 301 SSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVL 380 (396)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHH
Confidence 455567766666666677665544444444555 3467777887776 5678889999999888 777777899999988
Q ss_pred HHHHHHHHHHH
Q 014301 386 GLMMIVCTLPV 396 (427)
Q Consensus 386 ~~~~~~~~~~~ 396 (427)
+++.++..+..
T Consensus 381 ~~~~~i~~~~~ 391 (396)
T TIGR00882 381 GCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHHH
Confidence 88877666554
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=241.26 Aligned_cols=371 Identities=13% Similarity=0.046 Sum_probs=257.6
Q ss_pred ChhhHHHHHHHHHhHhhhccc-cchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCC-chHHHHHHHHHH
Q 014301 1 MRAFHLAWLSLFSCFFSTFSI-PPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGP-RVASATLSLITA 78 (427)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~ 78 (427)
||.-....+..+..+....+. +++.+.+.+++|.|..|+|++.+++.++..++++++|+++||+|| |+++..+.++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~ 80 (418)
T TIGR00889 1 MKTTAKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGA 80 (418)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455555666777777777775 556667778899999999999999999999999999999999965 778888888888
Q ss_pred HHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHH----H----cccCccccccchhhhhhhhhhhHHHHHHHHHHHH
Q 014301 79 PIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWM----S----SMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIF 149 (427)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i----~----~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 149 (427)
++..+..+.++++.+.+.|++.|++.+.. +...++. . |......|.|..| .+|..+|+.+++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~ 154 (418)
T TIGR00889 81 LLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD 154 (418)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc
Confidence 88888888999999999999999987654 4444432 1 2233344556555 466766666665542
Q ss_pred HHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHH
Q 014301 150 TAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYG 229 (427)
Q Consensus 150 ~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (427)
. ...|+ +|++.++..++..+..+..+|+ |+.++++ + .+ .+ +......++.+|+|+++...+..+
T Consensus 155 ~---------~~~~~-~f~~~~~~~~~~~~~~~~~~e~-~~~~~~~-~-~~--~~-~~~~~~~~~~~k~~~~~~~~~~~~ 218 (418)
T TIGR00889 155 I---------ELSNI-QLYITAGSSALLGVFALTLPDI-PVAKSTA-K-MS--IK-VMLGLDAFILFKNKRMAIFFFFSM 218 (418)
T ss_pred c---------cchhH-HHHHHHHHHHHHHHHHhcCCCC-CCCcccc-c-cC--HH-HHhhhhHHHHhcCCCeeeHHHHHH
Confidence 1 23455 3556666555555544444433 3221111 0 11 11 111123456789999888777777
Q ss_pred HHHHHHhhhhhhhcchhhhccCCc--------HHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHH
Q 014301 230 FCFGVELTTDNIIAQYFYDRFGVN--------LQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTA 301 (427)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~g~s--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 301 (427)
+..........+.+.|+++. |.+ ..+.+...+...+..+++.+..+++.||+|+|+ .+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~-------~l~~~~~~ 290 (418)
T TIGR00889 219 LLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK-------VMLLSLVA 290 (418)
T ss_pred HHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-------HHHHHHHH
Confidence 76665556667778887653 544 366788889999999999999999999999987 45555555
Q ss_pred HHHHHHHHhhcc----chHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhc-chhhhhhHHHHHHH-hhcc
Q 014301 302 AGLLCVLLGRVN----SLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTG-SGGTVGAVVTQMLL-FSGS 374 (427)
Q Consensus 302 ~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~-~~~~~g~~~~~~~~-~~~~ 374 (427)
..+......... +.+..++..++.+++.+...+....+..+ .|++.||++.|+.+ ....+|..++|.+. ...+
T Consensus 291 ~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~ 370 (418)
T TIGR00889 291 WALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVE 370 (418)
T ss_pred HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 555444443322 12445566777888887777777777774 58889999999997 56778999999988 4444
Q ss_pred c------ccchhHHHHHHHHHHHHHHHHHhhcc
Q 014301 375 K------FSKQTSISVMGLMMIVCTLPVSLIYF 401 (427)
Q Consensus 375 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (427)
. .+|+..|...+++.+++.++.....+
T Consensus 371 ~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 371 KMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3 46888898888887777766666554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=218.07 Aligned_cols=365 Identities=16% Similarity=0.130 Sum_probs=289.0
Q ss_pred HHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHH
Q 014301 5 HLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSA 84 (427)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (427)
......+++..+......++.|.+++.++++..|.+.+...++.++.+.+++.|++.+|+|+|+.++.++.+++++..+.
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34556677777778889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred h---chhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHH--H------
Q 014301 85 S---LVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTA--I------ 152 (427)
Q Consensus 85 ~---~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--l------ 152 (427)
. ...+|..++++-++.|.|.+.. ++.+.++....++++..+.+++.+.++.+|..++|.++..+... .
T Consensus 96 ~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~ 175 (422)
T COG0738 96 WPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA 175 (422)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH
Confidence 4 5678999999999999999987 99999999999998889999999999999999999888766542 0
Q ss_pred --hhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHH
Q 014301 153 --TSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGF 230 (427)
Q Consensus 153 --~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (427)
..........||++|...+....+..+.....+ .|+.++.+.++.+. ++ ....+++++|+++...+..++
T Consensus 176 ~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k--~p~~~~~~~~~~~~----~~--~~~~~l~~~~~~~~gvl~~Fl 247 (422)
T COG0738 176 QILAIKGADASSVQFPYLILAGLLVLLAVLILLSK--LPDLQVAAPSLGAS----GS--AGLSSLFQNKHLRLGVLAIFL 247 (422)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc--CCcCCccccccccc----cc--chHHHHHhChHHHHHHHHHHH
Confidence 000001133588899888877666655544442 23332222111110 11 145678899999999999999
Q ss_pred HHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHh
Q 014301 231 CFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLG 310 (427)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (427)
..+.+....+|++.|+.+..|.+..+++...+..+.+..+|++++.++.+|+...+ .+.....+..+.+....
T Consensus 248 YVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k-------~Laf~a~~~ill~~~~~ 320 (422)
T COG0738 248 YVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK-------YLAFYALIAILLLLAVA 320 (422)
T ss_pred HHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999977999999999999999999999999999999998876 66666666666666666
Q ss_pred hccchHHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHH
Q 014301 311 RVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMG 386 (427)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 386 (427)
..++.. .+....+.|++++..+|..++...+.-+++... .|....+..+|+++.|++. ...|+.+....+....
T Consensus 321 l~~g~v-~~~~l~~ig~F~simfPTIfslal~~l~~~ts~-~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~p 395 (422)
T COG0738 321 LIGGVV-ALYALFLIGLFNSIMFPTIFSLALKNLGEHTSV-GSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVP 395 (422)
T ss_pred HhcChH-HHHHHHHHHHHhHHHHHHHHHHHHhccCccccc-cceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 666644 445567789999999999999888543344443 3444456778888888888 8888877776655333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=265.90 Aligned_cols=369 Identities=12% Similarity=0.052 Sum_probs=262.7
Q ss_pred hhHHHHHHHHHhHhhhccccc----h-hhhhhhhcCCCc-chhhHHHHHHHHHHHHhhccccccccccCCchHHHH---H
Q 014301 3 AFHLAWLSLFSCFFSTFSIPP----L-IPIIRHDLNLTD-TDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASAT---L 73 (427)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~----~-~~~i~~~~~~s~-~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~---~ 73 (427)
.+...+...++..++..+... . ...+.++.+.+. ...++..+++.+.+.+.++++|+++||+|||+++.. .
T Consensus 12 ~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~ 91 (1140)
T PRK06814 12 RFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFA 91 (1140)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHH
Confidence 455556666666665433222 2 223444444433 447888999999999999999999999999997533 2
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Q 014301 74 SLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAI 152 (427)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l 152 (427)
.+...+..+.....+|+++++++|+++|++.+.+ ++..+++.|++++++|++++++.++..++|.++|+.+++.+..
T Consensus 92 ~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~-- 169 (1140)
T PRK06814 92 EIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI-- 169 (1140)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 2223333333334589999999999999999987 8899999999999999999999999999999888888887766
Q ss_pred hhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHH
Q 014301 153 TSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCF 232 (427)
Q Consensus 153 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (427)
..+|++.|...++..++..++.++++++.+++...+.+. ... ++..+.++...++|.++...+..++.+
T Consensus 170 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1140)
T PRK06814 170 -------SGNFVILVALLMGIAVLGWLASLFIPKTGNAAPDLKIDR---NII-RSTITLLKYAKADKRIWLAILGISWFW 238 (1140)
T ss_pred -------ccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCeecc---chH-HHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 679999995555555554444455544332221111111 111 233456778889999999888888888
Q ss_pred HHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh-
Q 014301 233 GVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR- 311 (427)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 311 (427)
+......+++|.|+.+.+|.++.+.+++.+..+++.+++.++.|++.|+..+++ .+..+.++..+....+..
T Consensus 239 ~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~-------~~~~~~~~~~~~~~~l~~~ 311 (1140)
T PRK06814 239 LVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLL-------YVPIGALLMGLFGLDLAFA 311 (1140)
T ss_pred HHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeee-------eehHHHHHHHHHHHHHHhc
Confidence 888888889999999989999999999999999999999999999998776654 111111111111111111
Q ss_pred -------------------ccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH-
Q 014301 312 -------------------VNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL- 370 (427)
Q Consensus 312 -------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~- 370 (427)
..+.+...+..+++|++.+...+...++.. ..|++.+|+++|+.++...++..+++.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g 391 (1140)
T PRK06814 312 SSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILA 391 (1140)
T ss_pred ccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHH
Confidence 145566677778888888888888888877 56899999999999999999999999888
Q ss_pred hhc-ccccchhHHHHHHHHHHH
Q 014301 371 FSG-SKFSKQTSISVMGLMMIV 391 (427)
Q Consensus 371 ~~~-~~~~~~~~~~~~~~~~~~ 391 (427)
... ...++...+...+++.++
T Consensus 392 ~l~~~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 392 LLQALGFSIPWIILFIALANLI 413 (1140)
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 333 445565555544444333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=235.24 Aligned_cols=364 Identities=13% Similarity=0.082 Sum_probs=247.0
Q ss_pred HHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhcccccccccc-----CCch-HHHHHHHHHHHHHH
Q 014301 9 LSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLL-----GPRV-ASATLSLITAPIVL 82 (427)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~~~~~~ 82 (427)
..++...+........+|.+.++.|.|.+++|++..+... .+.++++|+++||+ |||| .+..+..+.+++..
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 3455555566667888999999999999999999777776 58999999999999 8876 67888888888777
Q ss_pred HHhch---hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCC
Q 014301 83 SASLV---SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVG 158 (427)
Q Consensus 83 ~~~~~---~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~ 158 (427)
..++. ++++.+++..++.++..+.. ++..+++.|++|+|||+++.++...+.++|..+++.++..+.+.
T Consensus 84 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~------- 156 (402)
T PRK11902 84 AMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR------- 156 (402)
T ss_pred HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc-------
Confidence 77776 35777888888888777776 88899999999999999999999888888887776666555431
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhh
Q 014301 159 THTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTT 238 (427)
Q Consensus 159 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (427)
..|||..|++.++..++..+..++.+|+ ++++ ++ ++ +.+ ++..+.+++.+|||.++...+..++........
T Consensus 157 -~~gw~~~f~i~a~~~l~~~l~~~~~~e~-~~~~-~~--~~--~~~-~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~ 228 (402)
T PRK11902 157 -VLGWGNTYLLMAGLMLAGALTTLWAPEP-EVPA-RP--PR--SLG-EAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFA 228 (402)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHHhcCCC-cccc-cc--cc--hhH-HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH
Confidence 2499999999888776655544444332 2111 11 10 111 234456778889999887777665555444333
Q ss_pred hhhhcchhhhccCCcHHHHHHHHHHHHH-hhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc-cchH
Q 014301 239 DNIIAQYFYDRFGVNLQVAGTIAASFGM-ANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV-NSLW 316 (427)
Q Consensus 239 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 316 (427)
..+.+.++.+.+|+++.+.+......+. +.+++.++.+++.||+++|+ ..........+..+.+...... ++.+
T Consensus 229 ~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~----~l~~~~~~~~l~~l~~~~~~~~~~~~~ 304 (402)
T PRK11902 229 GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR----SLMLFGVLQAVSNLGYWVLAVTPKHLW 304 (402)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 3455566777789999999998766554 58889999999999999876 1111122222222222222333 3444
Q ss_pred HHHHHHH----HHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHH
Q 014301 317 GSVLVMC----VFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMI 390 (427)
Q Consensus 317 ~~~~~~~----~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 390 (427)
....... ..+++.+...+....+.++ .|.++ .+..+....++...++.+. ...+..|++..|...+++.+
T Consensus 305 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~ 380 (402)
T PRK11902 305 TMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIAL 380 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 4444433 3444455556666666663 34443 3445555556665555555 66778899988888887777
Q ss_pred HHHHHHH
Q 014301 391 VCTLPVS 397 (427)
Q Consensus 391 ~~~~~~~ 397 (427)
++.++..
T Consensus 381 ~~~~~~~ 387 (402)
T PRK11902 381 PGLALLW 387 (402)
T ss_pred HHHHHHH
Confidence 7665543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=266.15 Aligned_cols=378 Identities=12% Similarity=0.063 Sum_probs=265.2
Q ss_pred hhHHHHHHHHHhHhh-hccccchhhhhhhhcCCCcc--hhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHH
Q 014301 3 AFHLAWLSLFSCFFS-TFSIPPLIPIIRHDLNLTDT--DVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAP 79 (427)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~s~~--~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 79 (427)
.+...+...++..+. ......+.+.+.++++.+.+ ..+++.+++.+++.++++++|+++||+|||++++.+.++..+
T Consensus 10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~ 89 (1146)
T PRK08633 10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVG 89 (1146)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHH
Confidence 444555555554443 34455556666667766543 469999999999999999999999999999999998877555
Q ss_pred HHHHH---hchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhc
Q 014301 80 IVLSA---SLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSL 155 (427)
Q Consensus 80 ~~~~~---~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~ 155 (427)
+.++. ..+++++.+++.|+++|++.+.. ++..+++.|++|+++|++++++.+...++|.++|+.+++.+.......
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~ 169 (1146)
T PRK08633 90 LTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGN 169 (1146)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 55443 34578999999999999999987 888899999999999999999999999999988888887776531100
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHH-HHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHH
Q 014301 156 NVGTHTAWRLAFIVPSTFQALTAIM-VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGV 234 (427)
Q Consensus 156 ~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (427)
+..+..+|++.+.+..+...+..++ .+.+++ .|+......+++..... +...+.++.++++|.++...+..++....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 247 (1146)
T PRK08633 170 TPSEILGRIAPAGLVLLAVAVLGLIFAYRLPK-VPAAAPEVFDKKKYLFP-KLLWRNLKLLRSDRVLWLAIIGLSYFWFI 247 (1146)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHhcCcC-CCCCCcccccccccccH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 0000123444444444333333332 333333 23222111111111111 33455677788899888887777777777
Q ss_pred HhhhhhhhcchhhhccCCcHH-HHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 014301 235 ELTTDNIIAQYFYDRFGVNLQ-VAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN 313 (427)
Q Consensus 235 ~~~~~~~~~~~l~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (427)
......++|.|+.+.+|.+.. +.+++.+...++.+++.++.+++.||.++++ ....+.++..+....+....
T Consensus 248 ~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~ 320 (1146)
T PRK08633 248 SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG-------LVPLGALGLALSLFLLPTAP 320 (1146)
T ss_pred HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc-------chhHHHHHHHHHHHHHHHhh
Confidence 777888899999998999998 9999999999999999999999999998876 33344444444444555555
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhc-ccccchhHHHHHHHHH
Q 014301 314 SLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSG-SKFSKQTSISVMGLMM 389 (427)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 389 (427)
+.+...+..++.|++.+...+...++..+ .|++.||+++|+.+++.++|..+++.+. ... ...++...+...+.+.
T Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 399 (1146)
T PRK08633 321 SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT 399 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 66777777888888888888888787774 5888899999999999999988777666 222 2233444444444433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-29 Score=236.52 Aligned_cols=389 Identities=11% Similarity=0.020 Sum_probs=267.4
Q ss_pred hhHHHHHHHHHhHhhhccccchhhhh-hhh--cCCCcchhhHHHHHHHHHHHHhhccccccccc-cCCchHHHHHHHHHH
Q 014301 3 AFHLAWLSLFSCFFSTFSIPPLIPII-RHD--LNLTDTDVGTAGMASFLGSIFSRLAMGPVCDL-LGPRVASATLSLITA 78 (427)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~--~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~ 78 (427)
.++..+...+...+..+...+.+|.+ .++ +|.|+.+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~ 90 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM 90 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence 34455556666666667677777766 445 89999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccc---cccchhhhhhhhhhhHHHHHHHHHHHHHHHhh
Q 014301 79 PIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCV---VGLANGVSAGWANMGAGVSQLLMPLIFTAITS 154 (427)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~ 154 (427)
++.++.+++++++.++++|.+.|+|.|.. +...++++|++|+++ |+++.++.+...++|..+|+.+++.+.+
T Consensus 91 ~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~---- 166 (475)
T TIGR00924 91 LGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE---- 166 (475)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999987 888889999998764 8889999999999999888888877765
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccc--ccccchhhhhhhh------------------------
Q 014301 155 LNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKE--FKKTKTESREEKF------------------------ 208 (427)
Q Consensus 155 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------------------------ 208 (427)
+.+||+.|.+.++..++..+.....+++.++.++++ .++++++..+...
T Consensus 167 -----~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (475)
T TIGR00924 167 -----NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANI 241 (475)
T ss_pred -----hcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 679999999988655554444333333222111110 0000000000000
Q ss_pred -----------------HH-HHHhh--hcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHH----HHHHHHHH
Q 014301 209 -----------------VH-VLFNG--LKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQV----AGTIAASF 264 (427)
Q Consensus 209 -----------------~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~----~~~~~~~~ 264 (427)
.+ ...+. .|.+.+..+.+...+.+..+....+.++.+.++..+.+... .+++.+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n 321 (475)
T TIGR00924 242 LLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLN 321 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhh
Confidence 00 00001 11123333444444555566666666777766543433222 56777777
Q ss_pred HHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh---------ccchHHHHHHHHHHHHHhhhhhhh
Q 014301 265 GMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR---------VNSLWGSVLVMCVFSVFVQAAGGL 335 (427)
Q Consensus 265 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~ 335 (427)
.+..++..++..++..|.+||........-...+.++.++++..... ..+.+..+...++.+++.....|.
T Consensus 322 ~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~ 401 (475)
T TIGR00924 322 PFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPL 401 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHH
Confidence 77777777666665556655421111111124445555444444332 347778888999999999999999
Q ss_pred hhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHHhhc
Q 014301 336 TFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 336 ~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
..++..+. |++.||+.+|+......+|..+++.+. ...+..++...+...++..++..++.+...
T Consensus 402 ~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 402 GLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999854 888899999999999999999999887 444555666667677766666665554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=234.07 Aligned_cols=325 Identities=13% Similarity=0.119 Sum_probs=234.5
Q ss_pred ccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhcccccccccc-----CCchHH-HHHHHHHHHHHHHHhch---hh
Q 014301 19 FSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLL-----GPRVAS-ATLSLITAPIVLSASLV---SS 89 (427)
Q Consensus 19 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~~-~~~~~~~~~~~~~~~~~---~~ 89 (427)
...++..|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+ ||||.+ +.+.++.++.....++. .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 446788999999999999999999766 555554 99999999998 899974 56777777777777776 46
Q ss_pred HHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHH
Q 014301 90 PQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFI 168 (427)
Q Consensus 90 ~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~ 168 (427)
.+.+....++.+.+.+.. ++..+++.|++|+|+|+++.++...+.++|..+++.++..+........ ....+||..|+
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~-~~~~~wr~~f~ 161 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT-GLITLWGYIFF 161 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccccccHHHHH
Confidence 666777778888877776 8888999999999999999999988888888888777766655321100 01234999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCch---HHHHHHHHHHHHHHHhhhhhhhcch
Q 014301 169 VPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYR---GWILGLTYGFCFGVELTTDNIIAQY 245 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (427)
+.++..++..+..++..||+++++++ + ++++ ++.++.+++.+++|. .+...+..++.........++.|.|
T Consensus 162 i~ai~~l~~~~~~~~~~~e~~~~~~~--~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEPQEDASV--P---KPLT-QAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLF 235 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCccccc--c---hhHH-HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987777665555444442221111 1 1111 233445666777765 6666666666677778888899999
Q ss_pred hhhccCCcHHHHHHHHHHHH-HhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc-----------c
Q 014301 246 FYDRFGVNLQVAGTIAASFG-MANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV-----------N 313 (427)
Q Consensus 246 l~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 313 (427)
+++ +|+++.+.+......+ +..+++.++++++.||+|+|+ .+..+..+..+........ +
T Consensus 236 l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (356)
T TIGR00901 236 LLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY-------ALLLFGIVQALTNAGFVWLASNGHHDGITFP 307 (356)
T ss_pred HHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 988 7999999998887666 577889999999999999886 3333333333332222211 2
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhh
Q 014301 314 SLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGT 360 (427)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~ 360 (427)
+.+......++.+++.+...+...++..+ .|+++||+.+|+.+...+
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 308 HLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 34555566677788888899999998885 589999999998876543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=236.25 Aligned_cols=367 Identities=16% Similarity=0.186 Sum_probs=296.5
Q ss_pred hccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 014301 18 TFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVR 97 (427)
Q Consensus 18 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 97 (427)
...++.+.+.++++++-+.++++|+.++..-...+..++.+.+.||+|.|++.+.|.++.+++.++.++++++|++++..
T Consensus 62 ~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~ 141 (509)
T KOG2504|consen 62 INSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTF 141 (509)
T ss_pred hheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34477889999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred -HHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHH
Q 014301 98 -FLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQA 175 (427)
Q Consensus 98 -~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~ 175 (427)
++.|+|.+.. .+....+..++ +|+|+.++|+...+..+|. .+-|.+...+.+ .+|||+.+++.+.+.+
T Consensus 142 gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~----~~~~~l~~~l~~-----~~G~r~~~l~~~~~~l 211 (509)
T KOG2504|consen 142 GVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGT----VVFPPLLKYLLS-----KYGWRGALLIFGGISL 211 (509)
T ss_pred HHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcce----eeHHHHHHHHHH-----HhCcHHHHHHHHHHHH
Confidence 8889999986 77777778777 4789999999855555544 555566665555 7899999999999887
Q ss_pred HHHHHHHHHcCCCCCCCcc----------------------------cccc-----cc----hhhhhh--hhHHHH----
Q 014301 176 LTAIMVLIYGQDLPSGNYK----------------------------EFKK-----TK----TESREE--KFVHVL---- 212 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~----------------------------~~~~-----~~----~~~~~~--~~~~~~---- 212 (427)
-..+.....+|..++.++. ...+ +. .+++.. +....+
T Consensus 212 ~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 291 (509)
T KOG2504|consen 212 NVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLD 291 (509)
T ss_pred HHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhh
Confidence 7777766666622221000 0000 00 000000 111122
Q ss_pred HhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhH
Q 014301 213 FNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRL 292 (427)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 292 (427)
++++++|.++.+.+...+....+.....++|.|..+ +|++..+++.+.++.++..++++++.|+++|+...++ .
T Consensus 292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~-----~ 365 (509)
T KOG2504|consen 292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRA-----L 365 (509)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccch-----H
Confidence 578999999999999999999999999999999984 5999999999999999999999999999999988543 3
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-
Q 014301 293 WGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL- 370 (427)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~- 370 (427)
.....+.+..++.....+...+.+.+.....++|+..+...........+ ++.++-..+.|+...+..++..+||++.
T Consensus 366 ~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag 445 (509)
T KOG2504|consen 366 VLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG 445 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence 46666777777777788888899999999999999988887777655554 5888899999999999999999999999
Q ss_pred -hhcccccchhHHHHHHHHHHHHHHHHHhhc
Q 014301 371 -FSGSKFSKQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 371 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
..+.+..|...|...+++.+++..+.++..
T Consensus 446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 446 LLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 556666699999999999999987776665
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=236.57 Aligned_cols=340 Identities=13% Similarity=0.070 Sum_probs=247.7
Q ss_pred cchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccc----cCCch-HHHHHHHHHHHHHHHHhchhh------H
Q 014301 22 PPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDL----LGPRV-ASATLSLITAPIVLSASLVSS------P 90 (427)
Q Consensus 22 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~ 90 (427)
....+.+.+++|+|+.++|++.++..+..++.+|+.|+++|| +|||| .++.+....+++.+++...++ .
T Consensus 20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 445667788999999999999999999999999999999997 68855 566777778888887776653 4
Q ss_pred HHHHHHHHHHhhccccc-cchHHHHHccc-CccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHH
Q 014301 91 QSFILVRFLVGFCLANF-VANQFWMSSMF-SGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFI 168 (427)
Q Consensus 91 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~ 168 (427)
..+++.+++.+++.+.. ++..++..|.. +++||++..++.+.+.++|..+++.+.+.+...+.+ ..+..+||+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~--~~~~~g~~~~~~ 177 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG--GDDKFGWFMFAL 177 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcccccHHHHHH
Confidence 56777888999988876 77788888887 468899999998888888887777665555543321 012568999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhh
Q 014301 169 VPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYD 248 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (427)
+.+++.++..+..++..+|++++.+++ ++++ .+.++.+++.++||+++...+..++..........+.+.|.++
T Consensus 178 i~~~l~~~~~~~~~~~~~e~~~~~~~~-----~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (437)
T TIGR00792 178 VLALIGVVSLIICFFGTKERYSEIPKN-----IEKK-LSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTY 251 (437)
T ss_pred HHHHHHHHHHHHHHcCCEecCCCCCcc-----cccC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEee
Confidence 999888877666555544433221111 0111 3455677888999999988888777777776666666777766
Q ss_pred ccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Q 014301 249 RFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV-NSLWGSVLVMCVFSV 327 (427)
Q Consensus 249 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 327 (427)
..+ ++.+.+.+.....++.+++.++.+++.||+|+|+ ....+..+..+........ ++.+...+..++.++
T Consensus 252 ~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 323 (437)
T TIGR00792 252 VLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI-------LFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGF 323 (437)
T ss_pred ecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence 656 5566777777788899999999999999999886 3344444444443333332 345555666677888
Q ss_pred Hhhhhhhhhhhccccc--------CcCcceeeeehhcchhhhhhHHHHHHH-hhccccc
Q 014301 328 FVQAAGGLTFGVVPFV--------SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFS 377 (427)
Q Consensus 328 ~~~~~~~~~~~~~~~~--------~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~ 377 (427)
+.+...+..+++.+|. +++.+|+++|+.+....+|..+++.+. ...+..+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 324 GQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8888887777776654 245679999999999999999999888 4433333
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=209.78 Aligned_cols=351 Identities=17% Similarity=0.096 Sum_probs=280.7
Q ss_pred hccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 014301 18 TFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVR 97 (427)
Q Consensus 18 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 97 (427)
....+|+++++++|+|+|.+..|.++++..+...+.+++..++..|+|.++.+..++++.+++.++-... +.+.++.+-
T Consensus 28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt 106 (395)
T COG2807 28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGT 106 (395)
T ss_pred hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 3558999999999999999999999999999999999999999999999999999999999999998887 788899999
Q ss_pred HHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHH
Q 014301 98 FLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQAL 176 (427)
Q Consensus 98 ~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~ 176 (427)
.+.|.|.+.. +..+..+-+.+| |+-+..+|++....++|..+++.+.+.+.+. ..+||.....-+.++++
T Consensus 107 ~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~--------~~gW~~aL~~WAl~all 177 (395)
T COG2807 107 LLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQH--------SGGWRGALGFWALLALL 177 (395)
T ss_pred HHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHh--------hccHHHHHHHHHHHHHH
Confidence 9999999977 888999999997 6689999999999999999999988888873 23899999999999988
Q ss_pred HHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHH
Q 014301 177 TAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQV 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~ 256 (427)
..+.++.-. .+++.. + .+ .....-..++|||..|.+.+.+.+....++....|+|.++.|+ |+|..+
T Consensus 178 Al~~WlPq~-~r~~~~-~--~~--------~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~ 244 (395)
T COG2807 178 ALLIWLPQA-LREQAA-S--IA--------TKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAE 244 (395)
T ss_pred HHHHHhhhc-cccccc-c--cc--------cccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHH
Confidence 776554332 111110 0 00 0001113468899999999999999999999999999999987 999999
Q ss_pred HHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhh
Q 014301 257 AGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLT 336 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (427)
+|.+.+...+..++..+....+.+|.+.+++ .......+..++...+.+.+....... .++.|++.+..++..
T Consensus 245 aG~llsl~~l~~~~~~ll~P~la~R~~n~r~------~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~la 317 (395)
T COG2807 245 AGSLLSLMQLAQLPTALLIPLLARRSKNQRP------LVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLA 317 (395)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccch------HHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHH
Confidence 9999999999999999999999998655441 222222333333333323332211111 578899999999999
Q ss_pred hhccc-cc-CcCcceeeeehhcchhhhhhHHHHHHH--hhcccccchhHHHHHHHHHHHHHHHHHh
Q 014301 337 FGVVP-FV-SKRSLGVISGMTGSGGTVGAVVTQMLL--FSGSKFSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 337 ~~~~~-~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
...+. +. +++..+.-+|+.+.++++-...||++. ..|..++|...+.....+.+...+.-+.
T Consensus 318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 88887 33 677788899999999999999999999 7777888988887777666655554443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=210.25 Aligned_cols=350 Identities=15% Similarity=0.088 Sum_probs=246.5
Q ss_pred CcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccccchHHHH
Q 014301 35 TDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWM 114 (427)
Q Consensus 35 s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i 114 (427)
+..-.|.+.+.+.+++.+.++.+|.++||+|||+++++++...+++..+.+.++|+..++++|++.|+..|......+++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAii 145 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAII 145 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHH
Confidence 44557999999999999999999999999999999999999999999999999999777888999999999999999999
Q ss_pred HcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHH-HHHHHHHHcCCCCCCCc
Q 014301 115 SSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQAL-TAIMVLIYGQDLPSGNY 193 (427)
Q Consensus 115 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (427)
+|.+++|+|++.++..+..+++|.++||.+|+.+..+... .+.+..-.+-++..++... .....++++|+.|.+++
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~---~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~ 222 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSI---SGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKR 222 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhh---hccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 9999999999999999999999999999999988874321 0111122222222333333 34456777777665544
Q ss_pred ccccccch---hhhh--hhh-HHHHHhhhcCchHHH-------HHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHH
Q 014301 194 KEFKKTKT---ESRE--EKF-VHVLFNGLKNYRGWI-------LGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTI 260 (427)
Q Consensus 194 ~~~~~~~~---~~~~--~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~ 260 (427)
.+.+.+.. +++. .+. +..-...+||++... +.+..+.....+..+.+..+.+-++.+|+++.+.|.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~v 302 (451)
T KOG2615|consen 223 NDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKV 302 (451)
T ss_pred cccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheee
Confidence 41111100 0000 011 111112345544322 3334444455555555566666578899999999999
Q ss_pred HHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcc
Q 014301 261 AASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVV 340 (427)
Q Consensus 261 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 340 (427)
++..++.+.+.+....+..||.+... ...+.....+..-.+..+...........+..+..+......+....+.
T Consensus 303 l~~tGl~m~~~ql~~~~~l~~~~~~~-----~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv 377 (451)
T KOG2615|consen 303 LSTTGLLMLVIQLALVPILPRYKGNI-----KAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLV 377 (451)
T ss_pred eehhhHHHHHHHHhccccccccccch-----hhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 99988888888777777777765221 1133344444444555666666777788888889988888888888888
Q ss_pred c-ccCcCcceeeeehhcchhhhhhHHHHHHH--hhcccccchhHHHHHHHHHHHH
Q 014301 341 P-FVSKRSLGVISGMTGSGGTVGAVVTQMLL--FSGSKFSKQTSISVMGLMMIVC 392 (427)
Q Consensus 341 ~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 392 (427)
. ..|+++||+++|+..+.+.++-++||.+. ......+-+..+...+.+.+++
T Consensus 378 ~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 378 HKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP 432 (451)
T ss_pred HhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence 8 45889999999999999999999999987 2222223344444444444444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=226.47 Aligned_cols=385 Identities=12% Similarity=0.033 Sum_probs=246.1
Q ss_pred HHHHHHHHhHhhhcccc-chhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccc-cCCchHHHHHHHHHHHHHHH
Q 014301 6 LAWLSLFSCFFSTFSIP-PLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDL-LGPRVASATLSLITAPIVLS 83 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~ 83 (427)
..+...+..-+..+... .+...+++++|.+.++.+++.+.+.....+..+++|+++|| +||||+++.+.+++.++.+.
T Consensus 18 ~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~ 97 (489)
T PRK10207 18 MIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFM 97 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 33334444444444444 44556688899999999999999998888889999999999 99999999999999999999
Q ss_pred HhchhhHHH-HHHHHHHHhhccccc-cchHHHHHcccCcc--ccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCc
Q 014301 84 ASLVSSPQS-FILVRFLVGFCLANF-VANQFWMSSMFSGC--VVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGT 159 (427)
Q Consensus 84 ~~~~~~~~~-l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~ 159 (427)
++++++... ++++|.++|+|.|.. +...+++.|.+|++ +|++++++++...++|..+|+.+++.+.+
T Consensus 98 ~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~--------- 168 (489)
T PRK10207 98 TGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD--------- 168 (489)
T ss_pred HHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 999876554 558999999999987 88889999999887 45788999999999999988888888876
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHcCCCCCC----C-cccccccchh----------------hhhhhh----------
Q 014301 160 HTAWRLAFIVPSTFQALTAIMVLIYGQDLPSG----N-YKEFKKTKTE----------------SREEKF---------- 208 (427)
Q Consensus 160 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~----------------~~~~~~---------- 208 (427)
+.|||+.|++.++ +++..++.+...++..++ + +++.|..... .+..+.
T Consensus 169 ~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (489)
T PRK10207 169 KFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSI 247 (489)
T ss_pred hhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6799999998655 333333333222211111 1 1011100000 000000
Q ss_pred -------HHHH--HhhhcCchHHHHHHH--HHHHHHHHhhhhhhhcchhhhccCCcH----HHHHHHHHHHHHhhhcccc
Q 014301 209 -------VHVL--FNGLKNYRGWILGLT--YGFCFGVELTTDNIIAQYFYDRFGVNL----QVAGTIAASFGMANLFSRP 273 (427)
Q Consensus 209 -------~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~g~s~----~~~~~~~~~~~~~~~~~~~ 273 (427)
.+.. .+.+|+|.+....+. ..+.+..+....+.++.+.++..+.+. .....+.+...+..++..+
T Consensus 248 i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~p 327 (489)
T PRK10207 248 VVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASP 327 (489)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHH
Confidence 0000 123444444332222 333444445555667777654222211 0122333444455656677
Q ss_pred cchhhhhhhccccccchhHHHHHHHHHHHHHHHHH-------Hhh---ccchHHHHHHHHHHHHHhhhhhhhhhhccc-c
Q 014301 274 MGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVL-------LGR---VNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-F 342 (427)
Q Consensus 274 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~ 342 (427)
+.+++.||.++|+.......-...++.+.++++.. ... ..+.+..+...++.+++.....+...+.+. +
T Consensus 328 l~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~ 407 (489)
T PRK10207 328 ILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAAL 407 (489)
T ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 78899999998852111111222333333333221 111 124566677888999999999999888887 6
Q ss_pred cCcCcceeeeehhcchhhhhhHHHHHHH-hhcc----------cccchhHHHHHHHHHHHHHHHHHhhc
Q 014301 343 VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGS----------KFSKQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 343 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
.|++.+|.++|+.+...++|+.++..+. .... ...+.+.|...++..+++.++.....
T Consensus 408 aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 408 VPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999998777 2211 11245666666666666665554443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=215.56 Aligned_cols=338 Identities=12% Similarity=0.060 Sum_probs=249.3
Q ss_pred hccccchhhhhhhhcCCCcch-hhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 014301 18 TFSIPPLIPIIRHDLNLTDTD-VGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILV 96 (427)
Q Consensus 18 ~~~~~~~~~~i~~~~~~s~~~-~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (427)
+...+.+.|.+.+|+|+|+.| .|.+.+++..++++.+++.|+++||+|.|+++..+.+.+++..++.++++++..+.+.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445888999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHH---HHH
Q 014301 97 RFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVP---STF 173 (427)
Q Consensus 97 r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~---~~~ 173 (427)
|++.|++.|...+...++.+|+|+++|+++.++...+..+|..+++.+++.+. ..|||+.+... ...
T Consensus 122 R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~----------s~gWr~y~~Ln~Isl~s 191 (511)
T TIGR00806 122 EVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV----------TLGWISYSTLNIISLVF 191 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCchhHHHHHHHHHHH
Confidence 99999999986688899999999999999999998888888887777777632 45888765433 233
Q ss_pred HHHHHHHHHHHcCCCCC-----CC--------c-ccc--ccc--chh-hh------hhhhHHHHHhhhcCchHHHHHHHH
Q 014301 174 QALTAIMVLIYGQDLPS-----GN--------Y-KEF--KKT--KTE-SR------EEKFVHVLFNGLKNYRGWILGLTY 228 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~-----~~--------~-~~~--~~~--~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~ 228 (427)
..+..++.+++|+.++. ++ + ++. ++. ..+ .+ -+..+..+++..+||.++.-.+-+
T Consensus 192 ~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWw 271 (511)
T TIGR00806 192 MTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWW 271 (511)
T ss_pred HHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 33444445555532110 00 0 000 000 000 00 023456677778999988877777
Q ss_pred HHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHH
Q 014301 229 GFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVL 308 (427)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (427)
.+....+....++......+..+-++...|..-++..+.+.+..+..|++-.+..+. ....+.+...+.+..+++
T Consensus 272 a~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-----~~l~l~v~s~~~~gll~~ 346 (511)
T TIGR00806 272 VFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-----SKLLIAVVSAIQAGLVFW 346 (511)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-----HHHHHHHHHHHHHHHhhh
Confidence 777777777777666655443232222455666666667777778888874444221 233455555566666778
Q ss_pred HhhccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 309 LGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+...++.|..++..++++..+....+....-++ ++..+.-|-..|+.++..-+-..+-..+.
T Consensus 347 m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 347 MSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 888899999999999999999998888877666 67778889999998887766665555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-29 Score=215.05 Aligned_cols=347 Identities=10% Similarity=0.059 Sum_probs=274.7
Q ss_pred hhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-c
Q 014301 30 HDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-V 108 (427)
Q Consensus 30 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~ 108 (427)
++.+.+++++|++.....+.+.+..++.|.+.||+|+|..+++|..++..++++.++.+++++++++|.+||+|.+.. +
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 445678889999999999999999999999999999999999999999999999999999999999999999999987 8
Q ss_pred chHHHHHcccCccc-cccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCC
Q 014301 109 ANQFWMSSMFSGCV-VGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQD 187 (427)
Q Consensus 109 ~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 187 (427)
+..++++|.+|+++ |++++|+...+.++|..+||..|+.+++ ..|.+.+|++.+++.++...+.+++.++
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe---------~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE---------FAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh---------hcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 89999999998865 7999999999999999999999998887 6699999999999999998888877665
Q ss_pred CCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHh
Q 014301 188 LPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMA 267 (427)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~ 267 (427)
.+.+++...+ ...+++++++|.++...................++.+..|.+..+.-+.|..+....+.
T Consensus 250 ~~~~~~~~~~-----------~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~ 318 (464)
T KOG3764|consen 250 TEMDPDSTEQ-----------GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLS 318 (464)
T ss_pred cccCcccccc-----------CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccc
Confidence 3333211111 11235667889888877777666777777777888888888775555888988889999
Q ss_pred hhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc---c-
Q 014301 268 NLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF---V- 343 (427)
Q Consensus 268 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~- 343 (427)
..++..+.|.+.||+++-+ ......+.+..+......+..++....++-.+..+++.+...........+ .
T Consensus 319 y~ig~~lfg~la~k~~~~~-----wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~r 393 (464)
T KOG3764|consen 319 YAIGTNLFGKLADKYPHLR-----WLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPR 393 (464)
T ss_pred hhccCchHHHHHHhcCchh-----HHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchh
Confidence 9999999999999999532 124445555555556666666666665555555555555554444333332 1
Q ss_pred CcC---cceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHHhhcc
Q 014301 344 SKR---SLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSLIYF 401 (427)
Q Consensus 344 ~~~---~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (427)
..+ ..|..+++......+|.++||.+. ...+..|+++...+.++..++..-++..++.
T Consensus 394 h~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~~ 455 (464)
T KOG3764|consen 394 HVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLRI 455 (464)
T ss_pred hccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 468888888889999999999998 8888899999888888887777766655443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=235.84 Aligned_cols=276 Identities=13% Similarity=0.141 Sum_probs=221.9
Q ss_pred HHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchh--
Q 014301 11 LFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVS-- 88 (427)
Q Consensus 11 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-- 88 (427)
.+...+.....+..+|.++++|++++.+.|++.+.+.++++++.++.|++.||+||||.+.++.++++++.+++++.+
T Consensus 42 ~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~ 121 (633)
T TIGR00805 42 QLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFL 121 (633)
T ss_pred HHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHh
Confidence 333444456688899999999999999999999999999999999999999999999999999999999999988763
Q ss_pred -------------------------------------------------hHHHHHHHHHHHhhccccc-cchHHHHHccc
Q 014301 89 -------------------------------------------------SPQSFILVRFLVGFCLANF-VANQFWMSSMF 118 (427)
Q Consensus 89 -------------------------------------------------~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~ 118 (427)
.+..++++|+++|+|.+.. +...+++.|++
T Consensus 122 ~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~ 201 (633)
T TIGR00805 122 SGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFA 201 (633)
T ss_pred cCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccC
Confidence 2567789999999999987 88999999999
Q ss_pred CccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccC------------Ccc-cchhHHHHHHHHHHHHHHHHHHHHc
Q 014301 119 SGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNV------------GTH-TAWRLAFIVPSTFQALTAIMVLIYG 185 (427)
Q Consensus 119 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~------------~~~-~~wr~~f~~~~~~~~~~~~~~~~~~ 185 (427)
|+++|++.++++.....+|..+|+++++.+.....+... +.. .+||..|++.+++.++.++..++++
T Consensus 202 ~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 202 KSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred CccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999888888888888887777654322110 001 1388889999988888777777777
Q ss_pred CCCCCCCcc-cc---cccc----hh-------hhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhcc
Q 014301 186 QDLPSGNYK-EF---KKTK----TE-------SREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRF 250 (427)
Q Consensus 186 ~~~~~~~~~-~~---~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (427)
++.|++..+ +. +++. ++ ++.++..+..+++++||.++...+..++.....+++.+++|.|+++.+
T Consensus 282 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~ 361 (633)
T TIGR00805 282 KALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQY 361 (633)
T ss_pred cccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 766643211 00 0000 00 011234456788999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHH-hhhcccccchhhhhhhcccc
Q 014301 251 GVNLQVAGTIAASFGM-ANLFSRPMGGVISDRMGRRF 286 (427)
Q Consensus 251 g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~ 286 (427)
|+++.+++.+.....+ +.+++.+++|++.||++.+.
T Consensus 362 g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~ 398 (633)
T TIGR00805 362 GISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNV 398 (633)
T ss_pred CCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccH
Confidence 9999999999887766 56889999999999998653
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=214.61 Aligned_cols=363 Identities=12% Similarity=0.023 Sum_probs=244.2
Q ss_pred HHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHH--HHHHHHHHHHhhccc-cccccccCCchHHHHHHHHH-HHH
Q 014301 5 HLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTA--GMASFLGSIFSRLAM-GPVCDLLGPRVASATLSLIT-API 80 (427)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~--~s~~~l~~~~~~~~~-g~l~dr~Grr~~~~~~~~~~-~~~ 80 (427)
......++..++......|.+|.+.+|.|.|++++|.+ .+...+...+.+++. ++..||+||||..++.+.+. +..
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence 34455667777777788999999999999999999997 466678887888888 55899999999976665442 222
Q ss_pred HHHHh---chhh-HHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhc
Q 014301 81 VLSAS---LVSS-PQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSL 155 (427)
Q Consensus 81 ~~~~~---~~~~-~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~ 155 (427)
....+ ..++ ...++...++.++..+.. +...++..|..++++++...+....+..+|..+|+.....+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~----- 158 (390)
T TIGR02718 84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG----- 158 (390)
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 22222 2222 333444444555555555 6677777888877777777777655555566555544444443
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHH
Q 014301 156 NVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVE 235 (427)
Q Consensus 156 ~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (427)
+.|||..|++.++..++..+..++.+|++++++++ + ++..+.+++.+|+|..+...+..++.....
T Consensus 159 ----~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 224 (390)
T TIGR02718 159 ----KFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEA----P------LARRASLFRFFRRPLAWSLLALALLSAMTA 224 (390)
T ss_pred ----HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcccc----c------hhhHHHHHHHHcCcCHHHHHHHHHHHHHHH
Confidence 67999999999988877666666665443321110 0 111234567788898888777777777777
Q ss_pred hhhhhhhcchhhhccCCcHHHHHHHHHHHHH-hhhcccccchhhhhhhccccccchhHHHHHHHHHHHHH-HHHHH--hh
Q 014301 236 LTTDNIIAQYFYDRFGVNLQVAGTIAASFGM-ANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGL-LCVLL--GR 311 (427)
Q Consensus 236 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~ 311 (427)
.....+.+.|++| .|+++++.+......+. ..+++.++.|++.||+++|+ ....+..+... ..... ..
T Consensus 225 ~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-------~l~~~~~~~~~~~~~~~~~~~ 296 (390)
T TIGR02718 225 VSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR-------TFILGVGLAGSLALLWFAQAA 296 (390)
T ss_pred HHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999987 59999999998887764 66677889999999999986 33323222211 11111 11
Q ss_pred ---ccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCc-CcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHH
Q 014301 312 ---VNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSK-RSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVM 385 (427)
Q Consensus 312 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~ 385 (427)
.++.........+.++..+...+...+... ..++ +.+|+.++..+...++|..++|.+. ...+..+++..|...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~ 376 (390)
T TIGR02718 297 FWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSG 376 (390)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 122223333334445556666666666655 4454 7899999999999999999999998 666777888888877
Q ss_pred HHHHHHHHH
Q 014301 386 GLMMIVCTL 394 (427)
Q Consensus 386 ~~~~~~~~~ 394 (427)
+++.+++.+
T Consensus 377 ~~~~l~a~~ 385 (390)
T TIGR02718 377 TVLAVLAIL 385 (390)
T ss_pred HHHHHHHHH
Confidence 766665544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-27 Score=216.88 Aligned_cols=345 Identities=15% Similarity=0.169 Sum_probs=239.6
Q ss_pred hHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHhhccccc-cchHHHHH
Q 014301 40 GTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL---VSSPQSFILVRFLVGFCLANF-VANQFWMS 115 (427)
Q Consensus 40 g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~ 115 (427)
+.+.+++.+|.++|++..|.++||+|||..+.++.++..++.++..+ .+++++++++|++.|+..|.. ....-++.
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~ 142 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT 142 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 67788999999999999999999999999999999998777777665 478999999999999999976 78888999
Q ss_pred cccCccccccchhhhhhhhhhhHHHHHHHH-HHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCC----
Q 014301 116 SMFSGCVVGLANGVSAGWANMGAGVSQLLM-PLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPS---- 190 (427)
Q Consensus 116 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~-~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~---- 190 (427)
|..|++.||......+.+..+|..++..++ +.+. ++...|++.+....+++++..+...++||.++-
T Consensus 143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~il--------Gt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~ 214 (485)
T KOG0569|consen 143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLL--------GTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIK 214 (485)
T ss_pred hcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhc--------CCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence 999999999999999888888887776554 2222 125679999999999999998888888876431
Q ss_pred -CCcccc-------------cccchh--------hhhhhhHHHHHhhhcCchHHHHHH-HHHHHHHHHhhhhh---hhcc
Q 014301 191 -GNYKEF-------------KKTKTE--------SREEKFVHVLFNGLKNYRGWILGL-TYGFCFGVELTTDN---IIAQ 244 (427)
Q Consensus 191 -~~~~~~-------------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~ 244 (427)
+++++. +++.++ +.+++....++++++||....-.. ...+.........+ +...
T Consensus 215 k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst 294 (485)
T KOG0569|consen 215 KGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYST 294 (485)
T ss_pred cCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHH
Confidence 111100 000000 000001224566777766544322 22222222222222 2222
Q ss_pred hhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh---ccc---hH--
Q 014301 245 YFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR---VNS---LW-- 316 (427)
Q Consensus 245 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~-- 316 (427)
.+.+..|+++.++.+.....+....+..+++.++.||.|||+ .+..+..+..+....+.. ..+ .|
T Consensus 295 ~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp-------Lll~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (485)
T KOG0569|consen 295 SIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP-------LLLISLSLMAVALLLMSIALFLSNSFGSWLS 367 (485)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 233445999999999999999999999999999999999997 333333333333222221 111 12
Q ss_pred -HHHHHHHHHHHHhhhhhh-hhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHH
Q 014301 317 -GSVLVMCVFSVFVQAAGG-LTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVC 392 (427)
Q Consensus 317 -~~~~~~~~~g~~~~~~~~-~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 392 (427)
..+++.+++.++++...+ ..+-+.+|+ |++.|..+.+.......+..++-...+ ...+..|. ..|+.+.+.+.+.
T Consensus 368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~ 446 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIF 446 (485)
T ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 234566666677666644 446666676 888899999999999999999988888 66666665 5666666666666
Q ss_pred HHHHHhhc
Q 014301 393 TLPVSLIY 400 (427)
Q Consensus 393 ~~~~~~~~ 400 (427)
.+..+...
T Consensus 447 ~i~~~~~l 454 (485)
T KOG0569|consen 447 LIYLYRYL 454 (485)
T ss_pred HHHHHHhC
Confidence 55554443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=196.73 Aligned_cols=365 Identities=15% Similarity=0.156 Sum_probs=263.3
Q ss_pred ccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 014301 21 IPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLV 100 (427)
Q Consensus 21 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 100 (427)
.+.+.|...+.++.+..|..++.+....|..+++..+|..+|++|||+.+....+..++...+.+.++|+..+++.|.+.
T Consensus 97 ~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~ 176 (528)
T KOG0253|consen 97 LSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALW 176 (528)
T ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHH
Confidence 56677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHH
Q 014301 101 GFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180 (427)
Q Consensus 101 G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 180 (427)
|+|.|+.+...++-.|..|..+|..-+-.. ..+.+|.+....+...+.. ..||||.....+.+..+.+..
T Consensus 177 ~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~---------~~gwr~~l~~~~~pl~~~a~f 246 (528)
T KOG0253|consen 177 GFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS---------NFGWRYLLFTSSTPLMFAARF 246 (528)
T ss_pred hccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHhHHHHHHHH
Confidence 999999777777779999999998877666 8888888877777666655 679999999999888888888
Q ss_pred HHHHcCCCCCC-----Ccc---------------------------cccccc----------hhhhhhhhHHHHHhhhcC
Q 014301 181 VLIYGQDLPSG-----NYK---------------------------EFKKTK----------TESREEKFVHVLFNGLKN 218 (427)
Q Consensus 181 ~~~~~~~~~~~-----~~~---------------------------~~~~~~----------~~~~~~~~~~~~~~~~~~ 218 (427)
.++++|.+.-. +++ +.++++ .++...+..+.+..-+|
T Consensus 247 ~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lr- 325 (528)
T KOG0253|consen 247 LVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLR- 325 (528)
T ss_pred HhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHH-
Confidence 88887753210 000 000000 00000111222222233
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhcch-----------------hhhcc--CCcHHHHHHHHHHHHHhhhcccccchhhh
Q 014301 219 YRGWILGLTYGFCFGVELTTDNIIAQY-----------------FYDRF--GVNLQVAGTIAASFGMANLFSRPMGGVIS 279 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------l~~~~--g~s~~~~~~~~~~~~~~~~~~~~~~g~l~ 279 (427)
++.+.++..++...+.+++..-..... ++... ..+..+--.-..+..+....|.++.+++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 233334444444444444433322222 21110 11111112223445778999999999999
Q ss_pred hhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcch
Q 014301 280 DRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSG 358 (427)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~ 358 (427)
||+|||+ .+..++++.++..+.+....+.....+..+..-++..+.+...+.+.+|+ |+..|+++.|.....
T Consensus 406 erlGRKk-------TMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsm 478 (528)
T KOG0253|consen 406 ERLGRKK-------TMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSM 478 (528)
T ss_pred HHhcchh-------HHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhH
Confidence 9999998 77777788877777776665555555666778888889999999999987 777899999999999
Q ss_pred hhhhhHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHhhccccC
Q 014301 359 GTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQW 404 (427)
Q Consensus 359 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (427)
+.+|+++.|.+.... ..+...+..+.+.+++++.++..++....+
T Consensus 479 aRIggI~~p~iA~~~-e~s~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 479 ARIGGIFSPVIAMRA-ELSTSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred HhhhhhhhhHHHHHh-ccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence 999999999988332 233445566677777777777777665443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=201.96 Aligned_cols=387 Identities=14% Similarity=0.105 Sum_probs=268.6
Q ss_pred HHHHHHhHhhhccccchhhhhhhhc-C-------CCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHH
Q 014301 8 WLSLFSCFFSTFSIPPLIPIIRHDL-N-------LTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAP 79 (427)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~~~~-~-------~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 79 (427)
-..++.+.++.++++.+.|.+...| | .++...+.+..+..+|..+||+++|++.||+|||+++...++++.+
T Consensus 47 G~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi 126 (538)
T KOG0252|consen 47 GMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMII 126 (538)
T ss_pred hhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHH
Confidence 3457777888888888888877654 2 3455678889999999999999999999999999999999999999
Q ss_pred HHHHHhchh-------hHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 014301 80 IVLSASLVS-------SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTA 151 (427)
Q Consensus 80 ~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 151 (427)
++++++++. -.+++...|++.|+|.|+- |...+..+|....++||...+...+....|...|.+++-.+...
T Consensus 127 ~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~ 206 (538)
T KOG0252|consen 127 CSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAI 206 (538)
T ss_pred HHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHH
Confidence 999888752 3678899999999999997 55666669999999999999999999999998888888777665
Q ss_pred Hhhc-cCC-----cccchhHHHHHHHHHHHHHHHHHHHHcCCCCCC-----Cc----cccccc------ch-------hh
Q 014301 152 ITSL-NVG-----THTAWRLAFIVPSTFQALTAIMVLIYGQDLPSG-----NY----KEFKKT------KT-------ES 203 (427)
Q Consensus 152 l~~~-~~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~------~~-------~~ 203 (427)
+... +.+ -..=||..+.+.++++++.....+..+|...-+ +. ++.++. ++ +.
T Consensus 207 fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~ 286 (538)
T KOG0252|consen 207 FEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPP 286 (538)
T ss_pred HhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCC
Confidence 5431 111 023499999998888887766666555532211 00 000000 00 00
Q ss_pred hhhhhHHHHHhhh---cCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHH--------HHHHHH-HHHhhhcc
Q 014301 204 REEKFVHVLFNGL---KNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVA--------GTIAAS-FGMANLFS 271 (427)
Q Consensus 204 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--------~~~~~~-~~~~~~~~ 271 (427)
+ ++....+.+.+ .-++.+..+..+++....++....+....+.+. |+.+.+. +....+ .....++|
T Consensus 287 ~-~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~i-g~~~~~~~~~~~~~vA~~~~iia~~~~vPG 364 (538)
T KOG0252|consen 287 P-SNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAI-GVIPSANTYHELFKVAEGNLIIAVCSTVPG 364 (538)
T ss_pred c-ccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhh-ccCCCcchHHHHHHHHHHHHHHHHHccCCc
Confidence 0 01111111111 224455566677777777777776666666432 5443222 222222 33455568
Q ss_pred cccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHhhhh-hhhhhhccccc-Cc
Q 014301 272 RPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNS----LWGSVLVMCVFSVFVQAA-GGLTFGVVPFV-SK 345 (427)
Q Consensus 272 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~ 345 (427)
..+...++|++||++ ....++.+..+..+.+....+ .....+...+..++.... ......+.+|. |.
T Consensus 365 yw~tv~~id~iGRk~-------iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa 437 (538)
T KOG0252|consen 365 YWFTVYFIDIIGRKY-------IQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA 437 (538)
T ss_pred eeEEEEEeehhhhHH-------HHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence 888889999999997 667777777777766665443 223334444444444433 34445555565 78
Q ss_pred CcceeeeehhcchhhhhhHHHHHHH-hhcc-----cccchhHHHHHHHHHHHHHHHHHhhcccc
Q 014301 346 RSLGVISGMTGSGGTVGAVVTQMLL-FSGS-----KFSKQTSISVMGLMMIVCTLPVSLIYFPQ 403 (427)
Q Consensus 346 ~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (427)
+.||++.|+....+..|+.++...+ ...+ ..+.+..+++.+.+..++.+..+++...+
T Consensus 438 rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 438 RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 8899999999999999999999998 6666 67889999999999999888877766433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=207.99 Aligned_cols=337 Identities=15% Similarity=0.139 Sum_probs=236.4
Q ss_pred hccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 014301 18 TFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVR 97 (427)
Q Consensus 18 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 97 (427)
....+..++.+..|+|- ..+..|+.+.+.++.++..++.|+++|.+|||..++.+.++..+|.++++.++|...++++.
T Consensus 60 ~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~ 138 (599)
T PF06609_consen 60 LVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGM 138 (599)
T ss_pred HhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHH
Confidence 44456778899999995 57789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHH
Q 014301 98 FLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALT 177 (427)
Q Consensus 98 ~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~ 177 (427)
.+.|+|.|........++|..|.|.|.....+... ..+.....++.+.+.+.. +.+|||.|++.++...+.
T Consensus 139 ~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~----~~i~~~~~~~~ia~~~~~-----~~~WRw~~~~~~i~~~i~ 209 (599)
T PF06609_consen 139 VLYGVGAGVQELAALAISELVPNKWRGLGLAIASI----PFIITTWISPLIAQLFAA-----HSGWRWIFYIFIIWSGIA 209 (599)
T ss_pred HHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHH----HHHhhhcccHHHHHHhcc-----CCCcchHHHHHHHHHHHH
Confidence 99999987665556668999999999776655533 333333345555554433 569999999998887776
Q ss_pred HHHHHHHcCCCCCCC--cccccccc----------------------------h--hhhh-h----------------hh
Q 014301 178 AIMVLIYGQDLPSGN--YKEFKKTK----------------------------T--ESRE-E----------------KF 208 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~--~~~~~~~~----------------------------~--~~~~-~----------------~~ 208 (427)
+++.+++.++++.++ .++..+.+ . .+-+ . -.
T Consensus 210 ~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~ 289 (599)
T PF06609_consen 210 LVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVV 289 (599)
T ss_pred HHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHH
Confidence 665544443322111 11110000 0 0000 0 00
Q ss_pred HH---------HHHhhhcCc-hHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHH---HHHHHHHHHHHhhhcccccc
Q 014301 209 VH---------VLFNGLKNY-RGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQ---VAGTIAASFGMANLFSRPMG 275 (427)
Q Consensus 209 ~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~---~~~~~~~~~~~~~~~~~~~~ 275 (427)
++ .-.+++|++ .+....+..++....++....+.|......++-++. +.++.....+.+...+.++.
T Consensus 290 wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~ 369 (599)
T PF06609_consen 290 WEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVIL 369 (599)
T ss_pred hhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHH
Confidence 11 112456764 455555666666667777778888887777766653 56777778888888888999
Q ss_pred hhhhhhhccccccchhHHHHHHHHHHHHH--HHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeee
Q 014301 276 GVISDRMGRRFGIRGRLWGLWAVQTAAGL--LCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVIS 352 (427)
Q Consensus 276 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~ 352 (427)
+.+..+++|-| +.+..+.....+ ++......++....+...++.|++.+..........+ ..|+++.|++.
T Consensus 370 g~l~~~ir~~K------w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~ 443 (599)
T PF06609_consen 370 GLLFSKIRHIK------WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTAT 443 (599)
T ss_pred HHHHHHccchh------HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHH
Confidence 99998887654 222233333332 2222233345445566777888888887777777766 56899999999
Q ss_pred ehhcchhhhhhHHHHHHH
Q 014301 353 GMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 353 g~~~~~~~~g~~~~~~~~ 370 (427)
|+..+++.+|+.++..+.
T Consensus 444 gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 444 GLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 999999999998888776
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=206.46 Aligned_cols=382 Identities=13% Similarity=0.027 Sum_probs=238.2
Q ss_pred hHHHHHHHHHhHhhhccccchhh-hhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccc-cCCchHHHHHHHHHHHHH
Q 014301 4 FHLAWLSLFSCFFSTFSIPPLIP-IIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDL-LGPRVASATLSLITAPIV 81 (427)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~ 81 (427)
++..+...+...+..+.....++ .+.+++|.|+.+.+++.+.+........+++|+++|| +|||+.++.+.++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~ 102 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY 102 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 44555555555555555555555 5568999999999999888877666667889999999 599999999999999999
Q ss_pred HHHhchh-hHHHHHHHHHHHhhccccc-cchHHHHHcccCccc--cccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccC
Q 014301 82 LSASLVS-SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCV--VGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNV 157 (427)
Q Consensus 82 ~~~~~~~-~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~ 157 (427)
.++++++ +.+.+.++|+++|++.|.. +...+++.|++|+++ |..++++++...++|..+||.+++.+.+
T Consensus 103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~------- 175 (500)
T PRK09584 103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA------- 175 (500)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 9988874 5667788999999999987 777788999998654 4567888888888888888777777665
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHH---HcCCCCCCCc-ccccccch------------------hhhh--h-------
Q 014301 158 GTHTAWRLAFIVPSTFQALTAIMVLI---YGQDLPSGNY-KEFKKTKT------------------ESRE--E------- 206 (427)
Q Consensus 158 ~~~~~wr~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~------------------~~~~--~------- 206 (427)
+.|||+.|.+.++..++..+.... ..++.+++++ ++.+.... .+++ .
T Consensus 176 --~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (500)
T PRK09584 176 --KYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVA 253 (500)
T ss_pred --hhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 679999999887654443332222 2222111111 11111000 0000 0
Q ss_pred -----h-hHH--HHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhh--ccCCcH------HHHHHHHHHHHHhhhc
Q 014301 207 -----K-FVH--VLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYD--RFGVNL------QVAGTIAASFGMANLF 270 (427)
Q Consensus 207 -----~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~g~s~------~~~~~~~~~~~~~~~~ 270 (427)
. ..+ ..++..| ++.+...+ .++....++......+.++.. ..+.+. ...+++.+...+..++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil 331 (500)
T PRK09584 254 LGIVVIFGKEAFAMKGAAR-RKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMI 331 (500)
T ss_pred HHHHHHHHHHHhhcCHHHH-HHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHH
Confidence 0 000 0011111 22222222 223344445555555555432 111111 1144555566666666
Q ss_pred ccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHHHHhhhhhhhhhhccc
Q 014301 271 SRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN---------SLWGSVLVMCVFSVFVQAAGGLTFGVVP 341 (427)
Q Consensus 271 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 341 (427)
..++.+++-+|.++|..... ....++.+.++++..+.... +.+..+...++.+++.....|...+++.
T Consensus 332 ~~p~~~~~~~~l~~r~~~~~---~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~ 408 (500)
T PRK09584 332 GSPILAAIYNKMGDRLPMPH---KFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVA 408 (500)
T ss_pred HHHHHHHHHHHhCcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 66666666677766643222 34444455555444433222 2456777888999999999999999888
Q ss_pred c-cCcCcceeeeehhcchhhhhhHHHHHHH-hhc----------ccccchhHHHHHHHHHHHHHHHHHhh
Q 014301 342 F-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSG----------SKFSKQTSISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 342 ~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (427)
+ .|++.||+++|.......+|+.++..+. ... ...++...|...++..+++.++.+..
T Consensus 409 ~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~ 478 (500)
T PRK09584 409 QLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT 478 (500)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5888999999988777777777776665 211 11236677777776666555444443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=196.40 Aligned_cols=358 Identities=17% Similarity=0.125 Sum_probs=260.3
Q ss_pred ChhhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccC-CchHHHHHHHHHHH
Q 014301 1 MRAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLG-PRVASATLSLITAP 79 (427)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~~ 79 (427)
|+.........++.+.....+.|.+|.+-++.|.|..|+|.+.++..+...+.++++|.++||.+ +||.+.+..++.++
T Consensus 1 m~~~~rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~ 80 (400)
T PF03825_consen 1 MKLKFRLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSAL 80 (400)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 55666777788888888999999999999999999999999999999999999999999999986 57777777777777
Q ss_pred HHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHH-HHHHHHHHhhccC
Q 014301 80 IVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLL-MPLIFTAITSLNV 157 (427)
Q Consensus 80 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~-~~~l~~~l~~~~~ 157 (427)
........++++.++...++..+..... +...++..+... ++++-.|-...++++|.+++... +..+.+...
T Consensus 81 ~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~---- 154 (400)
T PF03825_consen 81 ALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLG---- 154 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhc----
Confidence 7777778889999888888888776654 666666666554 45566777777778888777544 222222110
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhh
Q 014301 158 GTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELT 237 (427)
Q Consensus 158 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (427)
..+....+++.+...++.....+.+|+.+++++.++..+ +.......+++|||+++...+..++.......
T Consensus 155 --~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~-------~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~ 225 (400)
T PF03825_consen 155 --ISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKESVK-------KLLGLDALKLLKNPRFLVFLLAAFLIGISHAA 225 (400)
T ss_pred --cccccHHHHHHHHHHHHHHHHHHhCCCCccccccCCCcc-------cccchHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 123334566666555555544555554432222111111 11222335788999999988888888888888
Q ss_pred hhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc-cchH
Q 014301 238 TDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV-NSLW 316 (427)
Q Consensus 238 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 316 (427)
..++.+.|+++.-|.+....+...++..+..++.-...+++.+|+|.++ .+..+.....+=..+.... ++.+
T Consensus 226 ~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~-------ll~~a~~~~~vR~~l~a~~~~~~~ 298 (400)
T PF03825_consen 226 YYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW-------LLLLALVAYAVRWLLYAYFSDPWP 298 (400)
T ss_pred HHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHhcCCcH
Confidence 9999999998874588888888888888899999999999999999886 6666777777666666555 4444
Q ss_pred HHHHHH----HHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchh-hhhhHHHHHHH-hhcccccchh
Q 014301 317 GSVLVM----CVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGG-TVGAVVTQMLL-FSGSKFSKQT 380 (427)
Q Consensus 317 ~~~~~~----~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~-~~g~~~~~~~~-~~~~~~~~~~ 380 (427)
...... .+-|+..+..+.....++.+ .|++.|+++.++++... .+|..+|..+. ...+..+.+.
T Consensus 299 ~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~ 369 (400)
T PF03825_consen 299 FIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG 369 (400)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence 333322 35788888888888888884 58899999999988754 58888888877 5555555443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-26 Score=188.07 Aligned_cols=360 Identities=18% Similarity=0.166 Sum_probs=251.4
Q ss_pred HHHHHHhHhhhcc------ccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccc-cCCchHHHHHHHHHHHH
Q 014301 8 WLSLFSCFFSTFS------IPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDL-LGPRVASATLSLITAPI 80 (427)
Q Consensus 8 ~~~~~~~~~~~~~------~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~ 80 (427)
....++|.++..+ .+.+..+..+|.+++.++..++.++|.+...+..+++|++.|| +|-|..-++-+....++
T Consensus 44 m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 44 MALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 3445555555433 5666678888999999999999999999999999999999996 58887777777777777
Q ss_pred HHHHhc---hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhcc
Q 014301 81 VLSASL---VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLN 156 (427)
Q Consensus 81 ~~~~~~---~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~ 156 (427)
.++.+. .+.+|.+.++|++.|+|.-.. ++-+++...|+..||.+.++|+......+|..+-..+.|++.+.....-
T Consensus 124 qliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~ 203 (459)
T KOG4686|consen 124 QLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMF 203 (459)
T ss_pred HHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhc
Confidence 776654 689999999999999998776 7778899999999999999999999999999888888888887665411
Q ss_pred C-Ccc--cchhHHHHH-HHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHH
Q 014301 157 V-GTH--TAWRLAFIV-PSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCF 232 (427)
Q Consensus 157 ~-~~~--~~wr~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (427)
. .++ .|-...+-. .....++.+. ..-..+++.| +..++++....+.+.....+ - -.|++|.+.+.+.+..
T Consensus 204 ~~~ghT~LG~~l~~~~~tc~~slical-~lg~~D~rAe---rilh~e~g~~Ge~pkLtdv~-~-f~ppfw~~~iicv~yy 277 (459)
T KOG4686|consen 204 PGVGHTLLGLWLCFEVKTCKQSLICAL-SLGLSDDRAE---RILHLEEGFLGEEPKLTDVN-T-FYPPFWVLVIICVLYY 277 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhHHH---HHHhhhcCcccCCccccccc-c-cCccHHHHHHHHHHHH
Confidence 0 001 011111111 1111111111 1111111111 11111110000011111111 1 2478999999999999
Q ss_pred HHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc
Q 014301 233 GVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV 312 (427)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (427)
...+.+...-|.++++++|+|+..++.+.+.....+.+.+.+.|.++||.|++. +......+.....-..+.+
T Consensus 278 va~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~------~wv~~a~~~tl~~H~~l~F- 350 (459)
T KOG4686|consen 278 VAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL------WWVASACILTLLGHSGLFF- 350 (459)
T ss_pred HHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee------hhHHHHHHHHHHHhhhHHh-
Confidence 999999999999999999999999999999999999999999999999999985 1222222222222222222
Q ss_pred cchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH--hhcccccchhH
Q 014301 313 NSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL--FSGSKFSKQTS 381 (427)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~ 381 (427)
+.+..+..+.+.|..+.......+..++ .+|+++.|+++|+.+.+.++|-++.|.+. ..+..+++.+.
T Consensus 351 -t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~l 421 (459)
T KOG4686|consen 351 -TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNL 421 (459)
T ss_pred -hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhH
Confidence 3344556778889998888777888888 46888999999999999999999999998 44444445443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-29 Score=241.76 Aligned_cols=386 Identities=15% Similarity=0.164 Sum_probs=244.2
Q ss_pred HHHHHhHhhhccccchhhhhh--hhcCCC---------cchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHH
Q 014301 9 LSLFSCFFSTFSIPPLIPIIR--HDLNLT---------DTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLIT 77 (427)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~--~~~~~s---------~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 77 (427)
+..+...++....+...+... .+++.+ +.+.++..+...+|..+|+++.|.++||+|||+.+..+..+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~ 86 (451)
T PF00083_consen 7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM 86 (451)
T ss_pred HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 344666666666655555444 222222 234689999999999999999999999999999999999999
Q ss_pred HHHHHHHhchh---hHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 014301 78 APIVLSASLVS---SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAIT 153 (427)
Q Consensus 78 ~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~ 153 (427)
.++.++.++++ |++.+.++|++.|++.|.. +....++.|..|+++|++..++.+....+|..++..++..+....
T Consensus 87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~- 165 (451)
T PF00083_consen 87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS- 165 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 99999999999 9999999999999999986 888999999999999999999999999888887777665543211
Q ss_pred hccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCC--------CCCcccccc---------cchhh-----hhhhhHHH
Q 014301 154 SLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLP--------SGNYKEFKK---------TKTES-----REEKFVHV 211 (427)
Q Consensus 154 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---------~~~~~-----~~~~~~~~ 211 (427)
+..+||..+.+.++++++..+...++||.+. ++.++..++ +.++. +.++.+..
T Consensus 166 -----~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T PF00083_consen 166 -----DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKAS 240 (451)
T ss_pred -----ccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccee
Confidence 1346999999999998877776666665421 110000000 00000 00000122
Q ss_pred HHhhhcCch----HHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccc
Q 014301 212 LFNGLKNYR----GWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFG 287 (427)
Q Consensus 212 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 287 (427)
+++.++++. ....................+....+.+..|.+.. -.......+...++.++..++.||+|||+
T Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~- 317 (451)
T PF00083_consen 241 WRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRK- 317 (451)
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccc-
Confidence 344555433 22222222222222222233333333344566665 22333455677778888889999999997
Q ss_pred cchhHHHHHHHHHHHHHHHHHHh-----hccc----hHHHHHHHHHHHHHhhhh-hhhhhhccccc-CcCcceeeeehhc
Q 014301 288 IRGRLWGLWAVQTAAGLLCVLLG-----RVNS----LWGSVLVMCVFSVFVQAA-GGLTFGVVPFV-SKRSLGVISGMTG 356 (427)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~~~g~~~g~~~ 356 (427)
....+.....+....+. ..++ ....+....+...+.+.. .+..+.+.+|. |++.|+++.|+..
T Consensus 318 ------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~ 391 (451)
T PF00083_consen 318 ------LLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSY 391 (451)
T ss_pred ------ccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccc
Confidence 33344333333333221 1122 122223333333333433 44555777776 8888999999999
Q ss_pred chhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCCCCCC
Q 014301 357 SGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGMFCGPSFDPNEP 418 (427)
Q Consensus 357 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (427)
..+++++.++|.+. ...+..+....+...+.+.+++.+.... ..||+++++.+
T Consensus 392 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~---------~lpET~g~~l~ 445 (451)
T PF00083_consen 392 AVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF---------FLPETKGKTLE 445 (451)
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHhheeE---------EEeeCCCCCHH
Confidence 99999999999887 5455444344455555555544443322 34566666553
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-24 Score=204.78 Aligned_cols=356 Identities=13% Similarity=0.129 Sum_probs=222.7
Q ss_pred ccccchhhhhhhhcC-----CCc--chhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHH
Q 014301 19 FSIPPLIPIIRHDLN-----LTD--TDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQ 91 (427)
Q Consensus 19 ~~~~~~~~~i~~~~~-----~s~--~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 91 (427)
...++..+.+.++.. .+. .+.+++.+...++..+++++.|+++|++|||+.++++.+++.++.+++++++|++
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~ 143 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWY 143 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 345666666666432 122 3458999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHH
Q 014301 92 SFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVP 170 (427)
Q Consensus 92 ~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~ 170 (427)
+++++|+++|+|.|.. ...+.+++|..|++.||...+..+....+|..++..++..... . ..+||..+.+.
T Consensus 144 ~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~----~----~~~Wr~~~~~~ 215 (513)
T KOG0254|consen 144 QLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK----V----YAGWRIPLGLA 215 (513)
T ss_pred HHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc----C----CccHHHHHHHH
Confidence 9999999999999987 8899999999999999999999988888887766433332221 0 14899999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcc---------------c-ccccchhhhhhhhH------------H-HHHhhhcCchH
Q 014301 171 STFQALTAIMVLIYGQDLPSGNYK---------------E-FKKTKTESREEKFV------------H-VLFNGLKNYRG 221 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~~~------------~-~~~~~~~~~~~ 221 (427)
.+++++..+..++.|| .|+.--+ . .+.+.+.+. +... + ..++.++ |..
T Consensus 216 ~i~~~~~~~~~~~~pe-sp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 292 (513)
T KOG0254|consen 216 LIPAVILALGMLFLPE-SPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVEL-ELLKIKLLVEAEVAEGKASWGELFS-PKV 292 (513)
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHcCChHHHHHHHHHHhCCCCcchHHHH-HHHHHHHHHhhhcccccccHHHhcC-cch
Confidence 9999888888444443 3321000 0 000000000 0000 0 0112222 222
Q ss_pred HH-HHHHHHHHHHHHh----hhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHH
Q 014301 222 WI-LGLTYGFCFGVEL----TTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLW 296 (427)
Q Consensus 222 ~~-~~~~~~~~~~~~~----~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 296 (427)
.. ..+...+..+.+. ....+.+.++++. |.+... .......++...++..+...+.||+|||+ .+.
T Consensus 293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~-g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~-------lll 363 (513)
T KOG0254|consen 293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA-GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRK-------LLL 363 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc-CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHH
Confidence 22 2223333333333 3333444444443 655432 44455566677777777899999999997 333
Q ss_pred HHHHHHHHHHHHHhh---c---------cchHHHHHHHHHHHHHhhhh-hhhhhhccccc-CcCcceeeeehhcchhhhh
Q 014301 297 AVQTAAGLLCVLLGR---V---------NSLWGSVLVMCVFSVFVQAA-GGLTFGVVPFV-SKRSLGVISGMTGSGGTVG 362 (427)
Q Consensus 297 ~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g 362 (427)
.+.....++...+.. . ...+..+...+++-...... .+..+.+.+|. |.+.|+++.++....+...
T Consensus 364 ~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~ 443 (513)
T KOG0254|consen 364 FGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLW 443 (513)
T ss_pred HhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHH
Confidence 333333333332221 1 11233344444444444444 34445566676 7788999999999998887
Q ss_pred hHHHHHHH-hhcccccchhHHHHHHHHHHHHHH
Q 014301 363 AVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTL 394 (427)
Q Consensus 363 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 394 (427)
+.+-.... ......+....+......+.+...
T Consensus 444 ~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~ 476 (513)
T KOG0254|consen 444 NFLISFFFPFITEALGIGGTFGYFGGICLLSLI 476 (513)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 77766555 333332233444444444444444
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=199.52 Aligned_cols=330 Identities=10% Similarity=0.027 Sum_probs=224.7
Q ss_pred cchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccc----cCCchH-HHHHHHHHHHHHHHHhchhh------H
Q 014301 22 PPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDL----LGPRVA-SATLSLITAPIVLSASLVSS------P 90 (427)
Q Consensus 22 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~~------~ 90 (427)
..+.+.+.+++|+|+.++|.+.++..+..++..|+.|+++|| +||||. ++.+....+++..+....++ .
T Consensus 30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~ 109 (444)
T PRK09669 30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI 109 (444)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 345667788999999999999999999999999999999998 788555 55666667666655544442 4
Q ss_pred HHHHHHHHHHhhccccc-cchHHHHHccc-CccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHH
Q 014301 91 QSFILVRFLVGFCLANF-VANQFWMSSMF-SGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFI 168 (427)
Q Consensus 91 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~ 168 (427)
..+++..++.+.+.+.. .+..++.+|+. +++||++..+......++|..+++.+...+...+.+. ....+|+..+.
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~--~~~~g~~~~~~ 187 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKG--DEQKGYFYAMM 187 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--chhhhHHHHHH
Confidence 56666677777776665 77788889988 4578999889888888888888877665555544210 11458999998
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhh
Q 014301 169 VPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYD 248 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (427)
+.++++++..+..++..+|++++++ + ++ ++.++.+++.+|||+++.+.+..++............+.|.+.
T Consensus 188 i~~ii~~v~~~~~~~~~~e~~~~~~----~----~~-~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~ 258 (444)
T PRK09669 188 VMGLLGVVLFFCCFFMTKERYTPEV----D----NS-SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNY 258 (444)
T ss_pred HHHHHHHHHHHHHhCCeEEecCCCC----c----CC-CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeee
Confidence 8888877766555544433222111 0 11 3445677888999999888777666555554444444444444
Q ss_pred ccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHH-HHHH-HhhccchHHHHHHHHHHH
Q 014301 249 RFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGL-LCVL-LGRVNSLWGSVLVMCVFS 326 (427)
Q Consensus 249 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~g 326 (427)
..+ +++..+.+.....+..+++.++.+++.||+|+|+ ....+.....+ .... ....++.+...+..++.+
T Consensus 259 ~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g 330 (444)
T PRK09669 259 VLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR-------AFKWTIVAFVILSALIFFIPPSNVWLIFALNILFN 330 (444)
T ss_pred ecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 333 3334444555556777788888999999999886 22222222222 1211 222345666677778899
Q ss_pred HHhhhhhhhhhhccccc-C-------cCcceeeeehhcchhhhhhHHHHHHH
Q 014301 327 VFVQAAGGLTFGVVPFV-S-------KRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 327 ~~~~~~~~~~~~~~~~~-~-------~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
++.+...+..+++.+|+ + .+..|..+|..+....+|..++|.+.
T Consensus 331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888765 2 22345567888888889988888877
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=191.67 Aligned_cols=357 Identities=11% Similarity=0.065 Sum_probs=264.0
Q ss_pred hhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHH-HHHHHHHHhch-hh-HHHHHHHHHHHhhccccc-cchHHH
Q 014301 38 DVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLI-TAPIVLSASLV-SS-PQSFILVRFLVGFCLANF-VANQFW 113 (427)
Q Consensus 38 ~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~~~~~~-~~-~~~l~~~r~l~G~~~~~~-~~~~~~ 113 (427)
..++..++..+..++..|+.|.++|+-|+||.++....+ ..+++....+. ++ ++...+.-++.-++.+.. +..+++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999999999999999988877766655 44555555553 33 433344444444555554 778889
Q ss_pred HHcccCcccc--------------------------ccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHH
Q 014301 114 MSSMFSGCVV--------------------------GLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAF 167 (427)
Q Consensus 114 i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f 167 (427)
+.|..+++++ ++..+.-....++|..+..++.-.+.....+. ..+..+-|..+
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~-~~~~~~~r~~~ 229 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST-ASNTWAIRVAF 229 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-cccchhhhHHH
Confidence 9999999888 89888888888888876665544433222111 12234579999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhh
Q 014301 168 IVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFY 247 (427)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (427)
.+.++.-++..+..++..|++|.+++.+...+.-...-++.++.+|+..|+|+...+++.+++..-...+.......|..
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~ 309 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYAT 309 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877777766665322221111111111455677788888999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh--------ccchHHHH
Q 014301 248 DRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR--------VNSLWGSV 319 (427)
Q Consensus 248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 319 (427)
+++|++..+...+.....+.+++|.++.+++.||+|.|.. ..+........+....... .++.+.++
T Consensus 310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~-----~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~ 384 (477)
T PF11700_consen 310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK-----RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW 384 (477)
T ss_pred HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-----HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence 9999999999999999999999999999999999999821 0222222222221111111 35677788
Q ss_pred HHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH--hhcccccchhHHHHHHHHHHHHHHHH
Q 014301 320 LVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL--FSGSKFSKQTSISVMGLMMIVCTLPV 396 (427)
Q Consensus 320 ~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (427)
+..++.|++.+..++..-++.+++ |+++.+..+|++...+...+.+||.+. ..+.+.+.+.++....++.+++.+++
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 888899999999999998888864 889999999999999999999999999 55555668899988888888888776
Q ss_pred Hhhc
Q 014301 397 SLIY 400 (427)
Q Consensus 397 ~~~~ 400 (427)
....
T Consensus 465 ~~v~ 468 (477)
T PF11700_consen 465 FFVD 468 (477)
T ss_pred hhcc
Confidence 5544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=197.94 Aligned_cols=368 Identities=12% Similarity=-0.028 Sum_probs=239.8
Q ss_pred HHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccC-----CchHHHHHHHHH-HHHHHH
Q 014301 10 SLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLG-----PRVASATLSLIT-APIVLS 83 (427)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~-~~~~~~ 83 (427)
.++..++.........|.+.+++|+|+++++...+...+...+-.+ +|.++||++ ||+.++++.++. .+....
T Consensus 34 ~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~ 112 (468)
T TIGR00788 34 VLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL 112 (468)
T ss_pred HHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh
Confidence 4555555544456667778888999999999999999999998666 999999998 777778887776 344444
Q ss_pred HhchhhHHHHH-HHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhh---hhhhHHHHHHHHHHHHHHHhhccCC
Q 014301 84 ASLVSSPQSFI-LVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGW---ANMGAGVSQLLMPLIFTAITSLNVG 158 (427)
Q Consensus 84 ~~~~~~~~~l~-~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~---~~~G~~~g~~~~~~l~~~l~~~~~~ 158 (427)
.+..++..... +.+++.+++.+.. ++..++..|..+ +++....+..+.. .++|..+|+.+++.+.+
T Consensus 113 l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~-------- 183 (468)
T TIGR00788 113 LPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD-------- 183 (468)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 44445544444 4888999998887 899999999998 5554443333333 33677777666665554
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccc---------cchhhhhhhhHHHHHhhhcCchHHHHHHHHH
Q 014301 159 THTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKK---------TKTESREEKFVHVLFNGLKNYRGWILGLTYG 229 (427)
Q Consensus 159 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (427)
..+||..|++.+++.++......+++|++++..++..++ ....+..++.....++.+++|.++...+..+
T Consensus 184 -~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fif 262 (468)
T TIGR00788 184 -KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIF 262 (468)
T ss_pred -hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 679999999998888777555555555421111110000 0000000122234555678888887655555
Q ss_pred HHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 014301 230 FCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLL 309 (427)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (427)
+.+..........-.+..+..|+++.+.|......+++.+++....+++.+|++.|+ .+..+..+..+.....
T Consensus 263 l~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~-------~l~~~~~l~~~~~~~~ 335 (468)
T TIGR00788 263 LSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL-------LFGVTTLLYTLSSLFD 335 (468)
T ss_pred HHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH-------HHHHHHHHHHHHHhCc
Confidence 521111111111111334567999999999999999999999999999888888775 4445554444433221
Q ss_pred hh----------ccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhccccc
Q 014301 310 GR----------VNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFS 377 (427)
Q Consensus 310 ~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~ 377 (427)
.. .++.+......++.+++.+....+...+..+ .|++.+|+.+++.+.+.++|..+++.+. ...+..+
T Consensus 336 ~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 336 LILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred eeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 10 0223334455567777777777777777774 5888999999999999999999999766 5555455
Q ss_pred -----chhHHHHHHHHHHHHHHH
Q 014301 378 -----KQTSISVMGLMMIVCTLP 395 (427)
Q Consensus 378 -----~~~~~~~~~~~~~~~~~~ 395 (427)
++..+....++.+...+.
T Consensus 416 ~~~~~~~~~~~~i~i~~~~~l~~ 438 (468)
T TIGR00788 416 ITCDNSNNLWLLILGHSLAPLLP 438 (468)
T ss_pred CCcccccchHHHHHHHHHHHHHH
Confidence 555555544444444433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-24 Score=201.72 Aligned_cols=370 Identities=12% Similarity=0.073 Sum_probs=254.0
Q ss_pred hccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch------hhHH
Q 014301 18 TFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV------SSPQ 91 (427)
Q Consensus 18 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------~~~~ 91 (427)
.+.++...|.+++++|+|..+.+++.++. ......+++.|++.||+|||+++.++.++++++.++++++ ++++
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~ 121 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV 121 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH
Confidence 34567888999999999999999998874 3455678889999999999999999999999999999997 6899
Q ss_pred HHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHH
Q 014301 92 SFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVP 170 (427)
Q Consensus 92 ~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~ 170 (427)
.+++.|++.|+|.+.. +.....+.+|+| ++||++.|+...+..+|.++.+.+ ...++ ..+|+..|++.
T Consensus 122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l---~~~l~-------~~~~~~~fl~l 190 (591)
T PTZ00207 122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSI---QLAFF-------SDNTSAYFFFL 190 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHH---HHHHH-------HHhHHHHHHHH
Confidence 9999999999998876 777888899996 789999999988888888642222 22222 22688888888
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCc---c----ccccc-----------------c--------------------------
Q 014301 171 STFQALTAIMVLIYGQDLPSGNY---K----EFKKT-----------------K-------------------------- 200 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~-----------------~-------------------------- 200 (427)
++..++..++.+.+.+++|.+.. + +.++. .
T Consensus 191 ~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~ 270 (591)
T PTZ00207 191 MSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLK 270 (591)
T ss_pred HHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888877776666555442110 0 00000 0
Q ss_pred -----------------------------------h-h---------------------------h-hhhhhHHHHHhhh
Q 014301 201 -----------------------------------T-E---------------------------S-REEKFVHVLFNGL 216 (427)
Q Consensus 201 -----------------------------------~-~---------------------------~-~~~~~~~~~~~~~ 216 (427)
+ + + +.++..+.+++.+
T Consensus 271 ~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l 350 (591)
T PTZ00207 271 LGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGL 350 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHH
Confidence 0 0 0 0000112556667
Q ss_pred cCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHH--HHHHHHHHHHhhhcccccchhhhhhhcccc----ccch
Q 014301 217 KNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQV--AGTIAASFGMANLFSRPMGGVISDRMGRRF----GIRG 290 (427)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~----~~~~ 290 (427)
++.++|.+++.+++..+......+.+.+..+..-|.+.++ ...+.++.++.+.+|++..|.+.....+|+ .++.
T Consensus 351 ~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt 430 (591)
T PTZ00207 351 KTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPIT 430 (591)
T ss_pred hchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchh
Confidence 7788999999999988888888888877765543653322 223778899999999999999884333332 2221
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHH-H
Q 014301 291 RLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQM-L 369 (427)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~-~ 369 (427)
..+.+... ..+..+++....+...+++..++.|+++|..++......+|+..++-|+-+-+.....-+|+.+-.- +
T Consensus 431 --~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l 507 (591)
T PTZ00207 431 --IALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLL 507 (591)
T ss_pred --HHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHH
Confidence 22222222 3333333333222246778889999999999999999999875577776666555555555554422 2
Q ss_pred H-hhcc-----ccc--------chhHHHHHHHHHHHHHHHHHhhccc
Q 014301 370 L-FSGS-----KFS--------KQTSISVMGLMMIVCTLPVSLIYFP 402 (427)
Q Consensus 370 ~-~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (427)
. .+.| ..+ ++.+|+++++++..+.++...+..|
T Consensus 508 ~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R 554 (591)
T PTZ00207 508 YGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ 554 (591)
T ss_pred HHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence 2 1111 111 5778888888888888877665544
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=202.74 Aligned_cols=343 Identities=17% Similarity=0.145 Sum_probs=227.3
Q ss_pred hhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-c
Q 014301 30 HDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-V 108 (427)
Q Consensus 30 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~ 108 (427)
+.++.+.....+..+++.+|..+|++++|.++||+|||++++.++++..++.+..++++|++.+++.|++.|++.++. .
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 556678888899999999999999999999999999999999999999999999999999999999999999999987 8
Q ss_pred chHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCC
Q 014301 109 ANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDL 188 (427)
Q Consensus 109 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~ 188 (427)
....++.|++++++|+.+..+ ......+..+++..+..+. .+||+.+++..++..+..+. +++++|.
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~-----------~~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT-----------RDWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 888889999999999999998 5555555555554444443 29999999999998887766 5555443
Q ss_pred CCCC-----cccc----c---------ccch--hhhh---hh-------hHHHHHhhhcCchHHHHHHHHHHHHHHHhhh
Q 014301 189 PSGN-----YKEF----K---------KTKT--ESRE---EK-------FVHVLFNGLKNYRGWILGLTYGFCFGVELTT 238 (427)
Q Consensus 189 ~~~~-----~~~~----~---------~~~~--~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (427)
|+-. .++. + .+.+ .+.. ++ ....+.+.++.|+.....+...+.+......
T Consensus 258 ~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 337 (521)
T KOG0255|consen 258 PRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLV 337 (521)
T ss_pred hHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHH
Confidence 3211 0000 0 0000 0000 00 0012344555554433333333333222222
Q ss_pred hhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchH--
Q 014301 239 DNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLW-- 316 (427)
Q Consensus 239 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 316 (427)
..-++. ..+..|.+... .....+.....+....+...|+.|||. .......+..++++.........
T Consensus 338 y~gl~~-~~~~lg~~~~~---~~~~~~~~~~p~~~~~~~~~~~~gR~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (521)
T KOG0255|consen 338 YYGLSL-NVSGLGGNIYL---NFTLSGLVELPAYFRNGLLLPEFGRRP-------PLFLSLFLAGIGLLLFGWLPDDLGG 406 (521)
T ss_pred HHhhhh-hhhhcCchHHH---HHHHHHHHHhhHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHHHHhhccchh
Confidence 111222 22233544432 233333366666677789999998886 56666666666666665544322
Q ss_pred -HHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Q 014301 317 -GSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTL 394 (427)
Q Consensus 317 -~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (427)
...+...+..++.+..+...+.+..|. |+..|..+.+..+....++++++|.+............+...+....+...
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (521)
T KOG0255|consen 407 WLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGL 486 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Confidence 345555555666666677777777765 788899999999999999999999988333334334444333444444444
Q ss_pred HH
Q 014301 395 PV 396 (427)
Q Consensus 395 ~~ 396 (427)
+.
T Consensus 487 ~~ 488 (521)
T KOG0255|consen 487 LS 488 (521)
T ss_pred HH
Confidence 43
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=180.92 Aligned_cols=392 Identities=14% Similarity=0.119 Sum_probs=280.1
Q ss_pred hhhHHHHHHHHHhHhhhcc-------ccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFS-------IPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLS 74 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~ 74 (427)
|.+..+|+......+-..+ +++...+..+.|+ +.+..-|+.-+|++.+....+++-|+.||+|-|...+++.
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 4556677766555544333 5777778888888 7888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhch------hhHH--HHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHH
Q 014301 75 LITAPIVLSASLV------SSPQ--SFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLM 145 (427)
Q Consensus 75 ~~~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~ 145 (427)
.+.++|..+-..+ +.++ ....+..+.+.+.-.. ......-.-|++++||..+..+-.....+|.++|.++.
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 9999999887665 2344 6667888888877766 44456669999999999999999889999999888888
Q ss_pred HHHHHHHhhccCCcccchhH--HHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHH
Q 014301 146 PLIFTAITSLNVGTHTAWRL--AFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWI 223 (427)
Q Consensus 146 ~~l~~~l~~~~~~~~~~wr~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (427)
|.+...-. ..++..|.- .|+..++++.+..++..+..+++|+.++...+...+ +.+..+.+++.++|+++..
T Consensus 197 pilV~~~~---~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---~~~f~~si~~~~~n~~F~i 270 (480)
T KOG2563|consen 197 PILVPSSK---DSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---DASFPKSIKSCFKNRQFII 270 (480)
T ss_pred ceecCCCC---CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---cCcHHHHHHHHHcCccHHH
Confidence 87765221 112446655 455555555555555555655555544332222111 2568888999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHH
Q 014301 224 LGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAG 303 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 303 (427)
..+.+....+.++...+.+..-+... |++...+|+......+++.+++.++|.+.||.++-+. ..........+..
T Consensus 271 l~~~ygi~~g~F~~l~~~l~~~l~~s-gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~---~~~v~~~~~~v~~ 346 (480)
T KOG2563|consen 271 LAICYGIGLGLFNSLSTLLNLALCPS-GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKL---TTLVLYLFALVGT 346 (480)
T ss_pred HHHHHhhhHHHHHHHHHHhhhccccc-cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHHHHHHHH
Confidence 99999999999998888877666554 7777889999999999999999999999999877541 1111111112221
Q ss_pred HHHHHHhh-ccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhccccc---
Q 014301 304 LLCVLLGR-VNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFS--- 377 (427)
Q Consensus 304 ~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~--- 377 (427)
..+..... ....+.......++|++.....|....+..|. .|..-++..|+.+..+++-+.+-..+. ...+..+
T Consensus 347 ~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~ 426 (480)
T KOG2563|consen 347 LMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPG 426 (480)
T ss_pred HHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCC
Confidence 11111111 12344556667778888888888888888865 788889999999999998888877777 4444444
Q ss_pred -chhHHHHHHHHHHHHHHHHHhhccccC
Q 014301 378 -KQTSISVMGLMMIVCTLPVSLIYFPQW 404 (427)
Q Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (427)
+....+.....+.+..++..+++...+
T Consensus 427 ~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 427 NTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred CCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 444455556666666666555554333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=197.40 Aligned_cols=331 Identities=13% Similarity=0.114 Sum_probs=254.7
Q ss_pred cchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhcccccccc----ccCCchHHH-HHHHHHHHHHHHHhch-h-------
Q 014301 22 PPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCD----LLGPRVASA-TLSLITAPIVLSASLV-S------- 88 (427)
Q Consensus 22 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~~~-~~~~~~~~~~~~~~~~-~------- 88 (427)
....+.+.+.+|+++...|.+..+..+..++..|+.|.++| |+||||..+ .+....+++..++... |
T Consensus 22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~ 101 (428)
T PF13347_consen 22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA 101 (428)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence 45667788889999999999999999999999999999999 899877655 5667778877777665 4
Q ss_pred hHHHHHHHHHHHhhccccc-cchHHHHHcccC-ccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcc-cchhH
Q 014301 89 SPQSFILVRFLVGFCLANF-VANQFWMSSMFS-GCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTH-TAWRL 165 (427)
Q Consensus 89 ~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~-~~wr~ 165 (427)
....+.+..++..++.... .+..++..|..+ +++|.+..+.-..+..+|..+...+.+.+...+.+ .+. .+|++
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~---~~~~~~~~~ 178 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGG---GDTSNGYRW 178 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcc---CccchHHHH
Confidence 2334567777778888877 888899999998 46899999998888888887666666666654432 112 28999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcch
Q 014301 166 AFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQY 245 (427)
Q Consensus 166 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (427)
...+.+++.++..+...+..+|.+++.+++ +++.+.++.+++.+|||+++.+.+..++.........+..+.|
T Consensus 179 ~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~-------~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~ 251 (428)
T PF13347_consen 179 MALVLAIVGLVFFLITFFFVKERSVEVTEQ-------EKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYY 251 (428)
T ss_pred HHHHHHHHHHHHhhhhhheeeecccccccc-------ccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 999999988887777666655511111111 1115567778899999999999999888888888888888888
Q ss_pred hhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHH
Q 014301 246 FYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV--NSLWGSVLVMC 323 (427)
Q Consensus 246 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 323 (427)
.++..|.+ ...+.......+..+++.++.++++||+|+|+ ....+..+..+........ ++.+...+..+
T Consensus 252 ~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 323 (428)
T PF13347_consen 252 FTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK-------VYIIGLLLAALGFLLLFFLGPGSPWLVLILFI 323 (428)
T ss_pred HHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee-------ehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 88877777 45667777788899999999999999999998 4445555555544444444 47888888999
Q ss_pred HHHHHhhhhhhhhhhcccccC--------cCcceeeeehhcchhhhhhHHHHHHH
Q 014301 324 VFSVFVQAAGGLTFGVVPFVS--------KRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 324 ~~g~~~~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+.|++.+..+....++.+|+- +++.|..+|+.+....++..+++.+.
T Consensus 324 l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~ 378 (428)
T PF13347_consen 324 LAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV 378 (428)
T ss_pred HhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 999999999988888888752 24468889999999999988888876
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-22 Score=183.91 Aligned_cols=378 Identities=10% Similarity=0.033 Sum_probs=247.7
Q ss_pred hhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhcccccccc----ccCCchHHHHH-HHHHHHHHHHHhchhhHH
Q 014301 17 STFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCD----LLGPRVASATL-SLITAPIVLSASLVSSPQ 91 (427)
Q Consensus 17 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~~~~~~~~~~~ 91 (427)
......+..+.+.+++|.++.+.+++..+..+...+.+++.|+++| |+||||.++.+ .....++..+.+++++.+
T Consensus 19 ~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 19 GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 3444566677788999999999999999999999999999999999 59999998875 555677777777776653
Q ss_pred -----------------HHHHHHHHHhhccccc-cchHHHHHcccCcccc--ccchhhhhhhhhhhHHHHHHHHHHHH--
Q 014301 92 -----------------SFILVRFLVGFCLANF-VANQFWMSSMFSGCVV--GLANGVSAGWANMGAGVSQLLMPLIF-- 149 (427)
Q Consensus 92 -----------------~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l~-- 149 (427)
.++++-.+..++.... .+..++++|.+|+++| +.+.++.+.+.++|..+|+.++....
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~ 178 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY 178 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2233333444466655 7888999999998865 57999998888999988888776541
Q ss_pred HHHhhccCC--c--ccchhHHHHHHHHHHHHHHHHHHHHcCCCCC-CCccc----ccccchhhhhhhhHHHHHhhhc-Cc
Q 014301 150 TAITSLNVG--T--HTAWRLAFIVPSTFQALTAIMVLIYGQDLPS-GNYKE----FKKTKTESREEKFVHVLFNGLK-NY 219 (427)
Q Consensus 150 ~~l~~~~~~--~--~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~ 219 (427)
..+...+.. + -.+.|..|++.++..++..++..+..+|.|. ++++. .+++++.+.++..++.++...+ .|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~ 258 (477)
T TIGR01301 179 KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPR 258 (477)
T ss_pred HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCH
Confidence 111100000 0 1267999999888777776666555444332 21111 1111111111222222333222 25
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcchhhh-ccCCcH------HH----HHHHHHHHHHhhhcccccchhhhhhhcccccc
Q 014301 220 RGWILGLTYGFCFGVELTTDNIIAQYFYD-RFGVNL------QV----AGTIAASFGMANLFSRPMGGVISDRMGRRFGI 288 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~s~------~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 288 (427)
.++.+++..++.+...+.+..+.+.|..+ .++-++ ++ ..+......+...+.+++..++.+|+|+|+
T Consensus 259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k-- 336 (477)
T TIGR01301 259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK-- 336 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--
Confidence 67889999999999999999999988753 444322 11 122333445555566677788888988543
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccc---------------------hHHHHHHHHHHHHHhhhhhhhhhhccc-ccCc-
Q 014301 289 RGRLWGLWAVQTAAGLLCVLLGRVNS---------------------LWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSK- 345 (427)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~- 345 (427)
+ .-..+.++.++++....+.++ .+..++.+.+.|+.....+...+++++ +.++
T Consensus 337 --~--~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~ 412 (477)
T TIGR01301 337 --R--LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL 412 (477)
T ss_pred --h--HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence 2 223333333333333221111 256677778899999999999999888 4563
Q ss_pred -CcceeeeehhcchhhhhhHHHHHHH-hhcc--cccchhHHHHHHHHHHHHHHHHHhhc
Q 014301 346 -RSLGVISGMTGSGGTVGAVVTQMLL-FSGS--KFSKQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 346 -~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
+..|..+|+.|.+..+...+..... ...+ ..+....+...++.++++++......
T Consensus 413 ~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~ 471 (477)
T TIGR01301 413 GAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILL 471 (477)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhC
Confidence 5579999999999888887777655 2222 23456677778888888887766544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=183.45 Aligned_cols=378 Identities=16% Similarity=0.157 Sum_probs=251.9
Q ss_pred hhHHHHHHHHHhHhhhccccchhhhhhh-hcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHH--H
Q 014301 3 AFHLAWLSLFSCFFSTFSIPPLIPIIRH-DLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITA--P 79 (427)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~--~ 79 (427)
+++..-...+..++......|..|...+ +.|+|.+|+|.+.++..+...+.+++.|.++||.|.||-++....... .
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~ 87 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLF 87 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 4555566677777777777888887665 489999999999999999999999999999999998887665544322 1
Q ss_pred HH-HHHhchhhH-HHHHHHHHHHhhccccc-----cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Q 014301 80 IV-LSASLVSSP-QSFILVRFLVGFCLANF-----VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAI 152 (427)
Q Consensus 80 ~~-~~~~~~~~~-~~l~~~r~l~G~~~~~~-----~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l 152 (427)
+. +...+.|-. ..+.++-++.|+..+.. +...+++.++. ++.+.-.|-...++++|.+++..+++.+.+
T Consensus 88 ~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-- 163 (412)
T PF01306_consen 88 GPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-- 163 (412)
T ss_dssp HHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee--
Confidence 22 222222211 11223333434444422 33344444433 334455566667778898888888877764
Q ss_pred hhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHH
Q 014301 153 TSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCF 232 (427)
Q Consensus 153 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (427)
.+-+..|++....+++..++.+..+++.+++.+.+..++ ++++ +...++..+++|+|++|.+.+......
T Consensus 164 --------i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~k~~~fw~~~l~v~g~~ 233 (412)
T PF01306_consen 164 --------INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG-AKKD-KVSLKDVLSLFKMRNFWFFVLFVIGVA 233 (412)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS-S-------HHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred --------eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc-cCCC-CCcHHHHHHHhcchhHHHHHHHHHHHH
Confidence 244677887766666555555555443333222111111 1111 222455678999999999888777666
Q ss_pred HHHhhhhhhhcchhhhcc---CCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 014301 233 GVELTTDNIIAQYFYDRF---GVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLL 309 (427)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (427)
..+..+....+.|..+.+ +.+....|++.+...+..++...+..++.+|+|.|+ .+.+...+..+=....
T Consensus 234 ~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~-------~Lllag~i~~iRi~~~ 306 (412)
T PF01306_consen 234 AIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN-------LLLLAGVIMAIRIIGS 306 (412)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh-------HHHHHHHHHHHHHHHH
Confidence 666666555666654332 455667888999889999999999999999999998 6777777777778888
Q ss_pred hhccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehh-cchhhhhhHHHHHHH-hhcccccchhHHHHHH
Q 014301 310 GRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMT-GSGGTVGAVVTQMLL-FSGSKFSKQTSISVMG 386 (427)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 386 (427)
.+.++++.....-.+-++-........+-+++ ..|+|..++...+. +...++|..+.+.+. ...|+.|++..+.+++
T Consensus 307 ~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg 386 (412)
T PF01306_consen 307 GFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMG 386 (412)
T ss_dssp HT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHH
Confidence 88899998888888888888888888888888 55777788888885 677788988888888 8888899999998888
Q ss_pred HHHHHHHHHHHhhcc
Q 014301 387 LMMIVCTLPVSLIYF 401 (427)
Q Consensus 387 ~~~~~~~~~~~~~~~ 401 (427)
.+.+...+......+
T Consensus 387 ~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 387 LIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHheeeec
Confidence 887766666655544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=194.74 Aligned_cols=333 Identities=11% Similarity=-0.004 Sum_probs=224.1
Q ss_pred hhhhhhhhcCCCcchhhHHHHHHHHHHHHhhcccccccc----ccCC-chHHHHHHHHHHHHHHHHhchh------hHHH
Q 014301 24 LIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCD----LLGP-RVASATLSLITAPIVLSASLVS------SPQS 92 (427)
Q Consensus 24 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~~~------~~~~ 92 (427)
+...+.+.+|+|+.++|.+..+..+.-++..|+.|.++| |+|| |+.++.+....+++..+.-..+ .+..
T Consensus 29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~ 108 (473)
T PRK10429 29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVF 108 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHH
Confidence 445667778999999999999999999999999999999 6699 4555567777777765554433 1345
Q ss_pred HHHHHHHHhhccccc-cchHHHHHccc-CccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHH
Q 014301 93 FILVRFLVGFCLANF-VANQFWMSSMF-SGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVP 170 (427)
Q Consensus 93 l~~~r~l~G~~~~~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~ 170 (427)
+++..++.+++.+.. ++..++..|.. +++||.+..+....+.++|..+.+.+...+...+.. ..+..+|+....+.
T Consensus 109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~--~~~~~g~~~~~~i~ 186 (473)
T PRK10429 109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG--GDRGFGFQMFTLVL 186 (473)
T ss_pred HHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CchhhhHHHHHHHH
Confidence 566667778887776 88888999998 588999999887777777765555544333332211 01134788887777
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhcc
Q 014301 171 STFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRF 250 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (427)
++..++..+..++..||++++++.+.+ ++++ .+.++.++..++||.++.+.+..++..........+.+.|.+...
T Consensus 187 ~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~-~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~ 262 (473)
T PRK10429 187 IAFFIVSTIITLRNVHEVYSSDNQVSA---EGSH-LTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVI 262 (473)
T ss_pred HHHHHHHHHHHHcCceecCCccccccc---cccC-CCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEEC
Confidence 777666555555443433221111100 1111 456677777889999888888777777766666666666665543
Q ss_pred CCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHH---HHHHH--hhccchHHHHHHHHHH
Q 014301 251 GVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGL---LCVLL--GRVNSLWGSVLVMCVF 325 (427)
Q Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~ 325 (427)
+ ++...+.+.....+..+++.++.+++.||+|+|+ ....+..+..+ ..... ...++.+..++..++.
T Consensus 263 ~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 334 (473)
T PRK10429 263 G-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI-------LWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILL 334 (473)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-------HHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 4 5556667777677888899999999999999987 33223222222 22211 1123455566666778
Q ss_pred HHHhhhhhhhhhhccccc-C-------cCcceeeeehhcchhhhhhHHHHHHH
Q 014301 326 SVFVQAAGGLTFGVVPFV-S-------KRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 326 g~~~~~~~~~~~~~~~~~-~-------~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+++.+..++...++.+|. + .+..|..+|.......++..+++.+.
T Consensus 335 g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~ 387 (473)
T PRK10429 335 NIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFI 387 (473)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777777765 2 23345588888888889998888777
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-22 Score=178.38 Aligned_cols=286 Identities=13% Similarity=0.080 Sum_probs=205.4
Q ss_pred hchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhc-------c
Q 014301 85 SLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSL-------N 156 (427)
Q Consensus 85 ~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~-------~ 156 (427)
+...+|+.++++-++.|.|.+.. +..+.++++..++|++.+.+++.+.++.+|..+||.++..+...-... .
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 34578999999999999999987 999999999999999999999999999999998888887665311000 0
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHh
Q 014301 157 VGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVEL 236 (427)
Q Consensus 157 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (427)
..+..+||++|++.+....+..+...+.+ .|+.++++.++..+++ .. ..++.+|+|.++...+..++..+.+.
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~--~p~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~l~~~~~f~yvg~e~ 157 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLP--LPELQEADVARVSSGD--TT---QKTSAFQFTHLVLGALGIFVYVGAEV 157 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCccccccccccc--cc---chhhHHhhHHHHHHHHHHHHHHHHHH
Confidence 00024899999987777666555444442 2222211111111111 00 11235677888888888888888999
Q ss_pred hhhhhhcchhhhc--cCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 014301 237 TTDNIIAQYFYDR--FGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNS 314 (427)
Q Consensus 237 ~~~~~~~~~l~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (427)
+..+|.+.|+.+. +|+++.+++...+....+..+|+++.+++.||+++|+ .+..+..+..+...+....++
T Consensus 158 ~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~-------~l~~~~~l~~~~~~l~~~~~~ 230 (310)
T TIGR01272 158 SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR-------YLAFNAFLAVLLSIGAALTHG 230 (310)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999754 6999999999999999999999999999999999876 333444444444333333333
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHH
Q 014301 315 LWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMG 386 (427)
Q Consensus 315 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 386 (427)
.. ......+.|++.+..+|...+...+..+++.+++.++. ..+.+|+.+.|.+. ...|..+.+.++.+..
T Consensus 231 ~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 231 YV-AMWFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 33 33456678999999999998888765445566777775 67789999999988 7777777777766433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-22 Score=187.70 Aligned_cols=328 Identities=11% Similarity=0.004 Sum_probs=208.9
Q ss_pred chhhhhhhhcCCCcchhhHHHHHHHHHHHHhhcccccccccc----CCchHH-HHHHHHHHHHHHHH-hc----hh--hH
Q 014301 23 PLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLL----GPRVAS-ATLSLITAPIVLSA-SL----VS--SP 90 (427)
Q Consensus 23 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~-~~----~~--~~ 90 (427)
.+.+.+.+.+|+++.++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+...+. .. ++ ..
T Consensus 30 ~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (448)
T PRK09848 30 FLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKV 109 (448)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHH
Confidence 344567778899999999999999999999999999999996 777755 44544444333332 21 11 22
Q ss_pred HHHHHHHHHHhhccccc-cchHHHHHcccCc-cccccchhhhhhhhhhh-HHHHHHHHHHHHHHHhhccCCcccchhHHH
Q 014301 91 QSFILVRFLVGFCLANF-VANQFWMSSMFSG-CVVGLANGVSAGWANMG-AGVSQLLMPLIFTAITSLNVGTHTAWRLAF 167 (427)
Q Consensus 91 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G-~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f 167 (427)
..++...++.+++.+.. ++..++..+..++ ++|.+..+.-..+.++| ..++..++|.+..............|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~-- 187 (448)
T PRK09848 110 VYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTI-- 187 (448)
T ss_pred HHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH--
Confidence 33444556778877776 6777777666644 67887766655443443 2233344444443211100000112332
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhh
Q 014301 168 IVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFY 247 (427)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (427)
+.++++.+..+..+...||++++ +.+ + ++..+.+++++|||+++...+..++............|.|++
T Consensus 188 -~~~v~~~~~~~~~~~~~~e~~~~---~~~------~-~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (448)
T PRK09848 188 -VLAIAGMVLYFICFKSTRENVVR---IVA------Q-PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVR 256 (448)
T ss_pred -HHHHHHHHHHHHHHcCcEeccCC---Ccc------C-CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEe
Confidence 22333332222222222221111 100 1 234556788899999999888888888877888888888888
Q ss_pred hccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHH
Q 014301 248 DRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV--NSLWGSVLVMCVF 325 (427)
Q Consensus 248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 325 (427)
+.+|.++...++......++.+++.++.+++.||+++|+ ....+..+..+....+... .+.+...+...+.
T Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~-------~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 329 (448)
T PRK09848 257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN-------TFLIGALLGTCGYLLFFWVSVWSLPVALVALAIA 329 (448)
T ss_pred eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Confidence 888987776665555546677888899999999999886 4444444444433333332 2455556667778
Q ss_pred HHHhhhhhhhhhhccccc-Cc-------CcceeeeehhcchhhhhhHHHHHHH
Q 014301 326 SVFVQAAGGLTFGVVPFV-SK-------RSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 326 g~~~~~~~~~~~~~~~~~-~~-------~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+++.+...+...++.++. +. +++|..+|+.+....+|..+++.+.
T Consensus 330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777754 22 3468889999999999999998877
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=176.07 Aligned_cols=377 Identities=11% Similarity=0.042 Sum_probs=226.0
Q ss_pred HHHHHHHHHhHhhhccccchhhh-hhhhcCCCcchhhHHHHHHHHHHHHhhcccccccccc-CCchHHHHHHHHHHHHHH
Q 014301 5 HLAWLSLFSCFFSTFSIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLL-GPRVASATLSLITAPIVL 82 (427)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~ 82 (427)
...+.......+..+.+...+|. +.+++|.++.+.+.+.+.+.....++.+++|+++||+ ||||+++.+.++..++.+
T Consensus 12 ~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~l 91 (493)
T PRK15462 12 YYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHV 91 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHH
Confidence 33444444455555556666665 4667899999999999999999999999999999999 999999999999999887
Q ss_pred HHhchh-hHHHHHHHHHHHhhccccc-cchHHHHHcccCcc--ccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCC
Q 014301 83 SASLVS-SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGC--VVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVG 158 (427)
Q Consensus 83 ~~~~~~-~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~ 158 (427)
+.+..+ +...+.++..+.++|.|.. +...++++|.+|++ +|..++++.....++|..++|.+.+.+.+
T Consensus 92 ll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~-------- 163 (493)
T PRK15462 92 VLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE-------- 163 (493)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 776543 2233444555556667766 66778889999876 68999999999999988888887777655
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHcCCCCCC---Ccccccccchhh--------------------hhhhhHH-----
Q 014301 159 THTAWRLAFIVPSTFQALTAIMVLIYGQDLPSG---NYKEFKKTKTES--------------------REEKFVH----- 210 (427)
Q Consensus 159 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------------------~~~~~~~----- 210 (427)
..|||+.|.+.++..++..+..+...+..++. ++++.++++... -.++...
T Consensus 164 -~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (493)
T PRK15462 164 -EYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIV 242 (493)
T ss_pred -hhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999987664443333332222221111 011110000000 0000000
Q ss_pred -----------HHHhhh---cCchHHH---HHHHHHHHHHHHhhhhhhhcchhhhc-----cCCcHHHHHHHHHHHHHhh
Q 014301 211 -----------VLFNGL---KNYRGWI---LGLTYGFCFGVELTTDNIIAQYFYDR-----FGVNLQVAGTIAASFGMAN 268 (427)
Q Consensus 211 -----------~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~ 268 (427)
..+... .+++.+. +.+...+.+..+....+.+..|.++. +|++. ...+..++..+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~i-p~~~~qslNp~~i 321 (493)
T PRK15462 243 ATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTV-PTAMFQSINAFAV 321 (493)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceee-CHHHHHhHhHHHH
Confidence 000001 0122222 22222223333333333444444332 23221 2445566666666
Q ss_pred hcccccchhhhhhhccc-cccchhHHHHHHHHHHHHHHHHHHhh----c-----cchHHHHHHHHHHHHHhhhhhhhhhh
Q 014301 269 LFSRPMGGVISDRMGRR-FGIRGRLWGLWAVQTAAGLLCVLLGR----V-----NSLWGSVLVMCVFSVFVQAAGGLTFG 338 (427)
Q Consensus 269 ~~~~~~~g~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~g~~~~~~~~~~~~ 338 (427)
++.+++.+++-.|..+| +.+..... ...++.+.+++...+.. . .+.+..+...++.+++.-...|...+
T Consensus 322 i~l~P~~a~lw~~l~~~~~~~s~~~K-fa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls 400 (493)
T PRK15462 322 MLCGVFLAWVVKESVAGNRTVRIWGK-FALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMS 400 (493)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHH
Confidence 77777777766666332 22222222 23333333333333211 1 24556777888899999999999999
Q ss_pred ccccc-CcCcceeeeehhcchh-hhhhHHHHHHH-hhcc------------cccchhHHHHHHHHHHHH
Q 014301 339 VVPFV-SKRSLGVISGMTGSGG-TVGAVVTQMLL-FSGS------------KFSKQTSISVMGLMMIVC 392 (427)
Q Consensus 339 ~~~~~-~~~~~g~~~g~~~~~~-~~g~~~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~~ 392 (427)
..+++ |++.+|..+|...... .+|+.++..+. .... ...+...|...+...+++
T Consensus 401 ~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 401 QITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 99976 7778999999986644 67877777776 2221 113445666666655544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-20 Score=163.81 Aligned_cols=354 Identities=11% Similarity=0.065 Sum_probs=266.3
Q ss_pred chhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHH-HHHHHHHHhchhh--H-HHHHHHHHHHhhccccc-cchH
Q 014301 37 TDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLI-TAPIVLSASLVSS--P-QSFILVRFLVGFCLANF-VANQ 111 (427)
Q Consensus 37 ~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~~~~-~~~~ 111 (427)
+..+...++..+..++.+|..|.++|+.|+||........ ..++..+..++++ + +..++...+..++.... +...
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 4567888999999999999999999999988876655554 5556666666654 4 44455667777877765 8888
Q ss_pred HHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHh---------hccCCcccchhHHHHHHHHHHHHHHHHHH
Q 014301 112 FWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAIT---------SLNVGTHTAWRLAFIVPSTFQALTAIMVL 182 (427)
Q Consensus 112 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~---------~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 182 (427)
+++.+..++++-++..++-.....+|+.+.-+..-.....-. .....+..+=|..+.+.++-.++..+..+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 999999999998988888777777877655443311111100 01112345678899999988888888887
Q ss_pred HHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHH
Q 014301 183 IYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAA 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~ 262 (427)
+..++.++.... ..+.-...-++.++.+++..+++++....+..++..-...+.......|...++|++..+...+..
T Consensus 218 ~~v~~~~~~~~~--~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~ 295 (438)
T COG2270 218 LNVHDAEKISSP--PPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGI 295 (438)
T ss_pred hccccccccccc--chHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 777765543211 101111112556778889999999999999999988888889999999999899999999999999
Q ss_pred HHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccc-
Q 014301 263 SFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP- 341 (427)
Q Consensus 263 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 341 (427)
..++.+++|.++.|++.||++.|+ .+..+.++..+..+...+........+...+.|.+.+..+...-++..
T Consensus 296 ~~~vvA~lg~ii~g~Ld~rfg~k~-------vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~ 368 (438)
T COG2270 296 ALSVVAALGAIIAGFLDERFGSKP-------VLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLAR 368 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCce-------eehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999999999999999997 455555555555555555555666667778889999999999888888
Q ss_pred ccCcCcceeeeehhcchhhhhhHHHHHHH--hhcccccchhHHHHHHHHHHHHHHHHHhh
Q 014301 342 FVSKRSLGVISGMTGSGGTVGAVVTQMLL--FSGSKFSKQTSISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 342 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (427)
.+|+++.++.+|+++..++.++.++|.+. ..+-+.+.+.++....++..++.+.+...
T Consensus 369 lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 369 LVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred hCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence 56999999999999999999999999999 55556677777777777777776654433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=170.61 Aligned_cols=335 Identities=12% Similarity=0.029 Sum_probs=259.1
Q ss_pred cchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccc----cCCchHH-HHHHHHHHHHHHHHhchhh------H
Q 014301 22 PPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDL----LGPRVAS-ATLSLITAPIVLSASLVSS------P 90 (427)
Q Consensus 22 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr----~Grr~~~-~~~~~~~~~~~~~~~~~~~------~ 90 (427)
..++-.+.+..|+|+..+|.+..+.-+--++..|+.|.++|| +||||.. +.+.+..++...++-.+++ .
T Consensus 33 ~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~ 112 (467)
T COG2211 33 LYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKL 112 (467)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcch
Confidence 344456778899999999999999999999999999999995 7876655 4555668888888777663 4
Q ss_pred HHHHHHHHHHhhccccc-cchHHHHHcccC-ccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHH
Q 014301 91 QSFILVRFLVGFCLANF-VANQFWMSSMFS-GCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFI 168 (427)
Q Consensus 91 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~ 168 (427)
...++.-.+.+++.+.. .|..++.+|.++ ++||.+..+.-+.+.++|..+...+.+++...+.+. +...||+..-.
T Consensus 113 ~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~--~~~~g~~~~~~ 190 (467)
T COG2211 113 IYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG--DKALGYQGTAL 190 (467)
T ss_pred HHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhhHHHHHH
Confidence 45567778889998887 888888888885 578999999999999999877777776666655431 11568999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhh
Q 014301 169 VPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYD 248 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (427)
+.+++..+..+.+++-.+|++.+.....+ ..+ ++.++.+...++||++...++...+.........+....|.+.
T Consensus 191 ~~~vi~~i~~l~~~~~v~ER~~~~~~~~~----~~~-~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y 265 (467)
T COG2211 191 VLGVIGVILLLFCFFNVKERVVETQPTKT----GVK-LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTY 265 (467)
T ss_pred HHHHHHHHHHHHHHHHhhcccCccccCcc----ccc-ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEE
Confidence 99988888877777766665543221111 111 5566777788999999999888888888888888888888888
Q ss_pred ccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHH
Q 014301 249 RFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV--NSLWGSVLVMCVFS 326 (427)
Q Consensus 249 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g 326 (427)
..|.+.............+.+++.++..++.+|+|+|+ ....+.++..+......+. ++.+..++..++.+
T Consensus 266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~-------~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~ 338 (467)
T COG2211 266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK-------LFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAG 338 (467)
T ss_pred EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH-------HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHH
Confidence 88988888888888888888888999999999999997 4555555555555444443 35677777778999
Q ss_pred HHhhhhhhhhhhcccccC--------cCcceeeeehhcchhhhhhHHHHHHH
Q 014301 327 VFVQAAGGLTFGVVPFVS--------KRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
++.+...+..+++.+|.. .+..|...|...++..+|.+++..+.
T Consensus 339 ~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~ 390 (467)
T COG2211 339 VGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP 390 (467)
T ss_pred HHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988752 34567788888888888888888665
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=164.85 Aligned_cols=328 Identities=13% Similarity=0.027 Sum_probs=212.3
Q ss_pred chhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccc----cCCchHHH-HHHHHHHHHHHHHhchhh------HH
Q 014301 23 PLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDL----LGPRVASA-TLSLITAPIVLSASLVSS------PQ 91 (427)
Q Consensus 23 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr----~Grr~~~~-~~~~~~~~~~~~~~~~~~------~~ 91 (427)
.+...+.+.+|+++..+|.+..+.-+--++..|+.|.++|| +||||..+ .+....+++..++-..|+ ..
T Consensus 31 ~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~ 110 (460)
T PRK11462 31 YMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI 110 (460)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 45556778899999999999999999999999999999995 79877665 455667777666544442 34
Q ss_pred HHHHHHHHHhhccccc-cchHHHHHcccC-ccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHH
Q 014301 92 SFILVRFLVGFCLANF-VANQFWMSSMFS-GCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIV 169 (427)
Q Consensus 92 ~l~~~r~l~G~~~~~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~ 169 (427)
.+.+.-++..++.... .+..++.+|..+ ++||++..++...+.++|..+++.+...+...+.+ .+...+|+....+
T Consensus 111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~--~~~~~g~~~~~~i 188 (460)
T PRK11462 111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG--DNKPLGFQGGIAV 188 (460)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CchhhhHHHHHHH
Confidence 5566667778888877 888888899987 68899999999988888888877776555544321 0113478888888
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhc
Q 014301 170 PSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDR 249 (427)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (427)
.+++.++.....+...+|++++++ + + .+.++.++..++||.++.+.....+..............|....
T Consensus 189 ~~ii~~i~~~i~~~~~kE~~~~~~---~------~-~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~ 258 (460)
T PRK11462 189 LSVVAFMMLAFCFFTTKERVEAPP---T------T-TSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI 258 (460)
T ss_pred HHHHHHHHHHHHHhcceeccCCCc---c------C-CCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh
Confidence 887776666555544433322110 0 1 33556778888999987776655555444444444444444433
Q ss_pred cCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHH-HHHHHHHHHhh-ccchHHHHHHHHHHHH
Q 014301 250 FGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT-AAGLLCVLLGR-VNSLWGSVLVMCVFSV 327 (427)
Q Consensus 250 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~g~ 327 (427)
.|. +...+.+.....+..+++.++++++.||+++|+ ....... ........... ..+.....+..++.++
T Consensus 259 ~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 330 (460)
T PRK11462 259 LGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT-------IFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGV 330 (460)
T ss_pred cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 443 333455666777888889999999999999885 2221111 11111111111 1223333444556677
Q ss_pred HhhhhhhhhhhcccccCc--------CcceeeeehhcchhhhhhHHHHHHH
Q 014301 328 FVQAAGGLTFGVVPFVSK--------RSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+.+...+..+++.+|..+ +..|..++.......+|..+++.+.
T Consensus 331 ~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~ 381 (460)
T PRK11462 331 LHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALI 381 (460)
T ss_pred HHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666665666665522 2234445666677778887777665
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-17 Score=147.07 Aligned_cols=352 Identities=13% Similarity=0.056 Sum_probs=235.9
Q ss_pred hhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccC-----CchHHHHH-HHHHHHHHHHHhch-----h-------
Q 014301 27 IIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLG-----PRVASATL-SLITAPIVLSASLV-----S------- 88 (427)
Q Consensus 27 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~G-----rr~~~~~~-~~~~~~~~~~~~~~-----~------- 88 (427)
.+..|++++..-.+.+.+...+... ..+.+|+.+|+.+ ||..+++. ..+.+.+..+..++ .
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 4667899999999999988888765 7999999999999 77766554 44455555544432 2
Q ss_pred -h-HH--HHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccch
Q 014301 89 -S-PQ--SFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAW 163 (427)
Q Consensus 89 -~-~~--~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~w 163 (427)
. .+ ...+.-.+.|+|.+.. .+..++++|..|+|+|+++.++...+--+|.+++..+.+.+.+- ...-
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~--------~s~~ 155 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP--------FSPE 155 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc--------cCHH
Confidence 2 22 2344456778888876 88889999999999999999999888888887776655443321 1122
Q ss_pred hH--HHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhh
Q 014301 164 RL--AFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNI 241 (427)
Q Consensus 164 r~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (427)
|. ++...++..++..++..+-.|++.++.. +..++++ ++..+.+++...+|+...+....++....++.-...
T Consensus 156 rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~----~~~~~~~-~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~i 230 (403)
T PF03209_consen 156 RLIQVIQGVALIALLLNLIALWGQEPRRSRRA----AAAERPR-PPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVI 230 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcccc----cCCCCCC-ccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHH
Confidence 22 2223333333333333333332222111 1111122 667778888889999998888888888888888889
Q ss_pred hcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhh-hccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 014301 242 IAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDR-MGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVL 320 (427)
Q Consensus 242 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (427)
+-+|--+.+|+++.+...+....+.+..++....|++..| .++++ .....+.....+...+.......+.+.+..
T Consensus 231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~----~a~~G~~~~~~~f~lii~a~~~~~~~~~~~ 306 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKR----TAALGCLLGALAFALIILAGPLGSPWLFRP 306 (403)
T ss_pred cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 9999999999999999999999999999999999987663 44332 222233333333334444556668888999
Q ss_pred HHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-h--------h--cccccchhHHHHHHHH
Q 014301 321 VMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-F--------S--GSKFSKQTSISVMGLM 388 (427)
Q Consensus 321 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~--------~--~~~~~~~~~~~~~~~~ 388 (427)
..+++|++.+.......+...+. .+++.|..+|.....+.++..++..+. . . ....+|...|..=++.
T Consensus 307 ~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~l 386 (403)
T PF03209_consen 307 GVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVL 386 (403)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 99999999999877777666655 678889988888776665554444443 1 1 1233455555555555
Q ss_pred HHHHHHHH
Q 014301 389 MIVCTLPV 396 (427)
Q Consensus 389 ~~~~~~~~ 396 (427)
.+++..+.
T Consensus 387 l~~a~~ll 394 (403)
T PF03209_consen 387 LLAALVLL 394 (403)
T ss_pred HHHHHHHH
Confidence 55554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=157.84 Aligned_cols=389 Identities=13% Similarity=0.044 Sum_probs=233.7
Q ss_pred HHHHHHHHhHhhhccccch-hhhhhh-hcCCCcchhhHHHHHHHHHHHHhhccccccccccCC-chHHHHHHHHHHHHHH
Q 014301 6 LAWLSLFSCFFSTFSIPPL-IPIIRH-DLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGP-RVASATLSLITAPIVL 82 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~ 82 (427)
...+..++.......+.+. .|++++ |.+.+.+..|++.++..++.+++++.+|+...|.+. |+.++.+.++..++.+
T Consensus 38 l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~l 117 (488)
T KOG2325|consen 38 LALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNL 117 (488)
T ss_pred HHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHH
Confidence 3334444444444444333 344443 477788899999999999999999999999999997 8889999999999999
Q ss_pred HH-hch---h-hHHHHHHHHHHHhhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhc-c
Q 014301 83 SA-SLV---S-SPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSL-N 156 (427)
Q Consensus 83 ~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~-~ 156 (427)
+. ++. + +-+.++++|++.|+|.+......+++++....++|.|+++....+..+|..+||.+++.+.....+- .
T Consensus 118 lY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~ 197 (488)
T KOG2325|consen 118 LYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFM 197 (488)
T ss_pred HHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceE
Confidence 88 332 3 6788999999999999999999999999988999999999998888889999998888887755330 0
Q ss_pred C---CcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhh-hcCchHHHHHHHHHHHH
Q 014301 157 V---GTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNG-LKNYRGWILGLTYGFCF 232 (427)
Q Consensus 157 ~---~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 232 (427)
. ....-+-.+-|+.++..++..+...+..+|.+.+..++..+++++++ +..+..+.. +..+..+...+..+...
T Consensus 198 i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~vc~~~~~~~~ 275 (488)
T KOG2325|consen 198 ILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEK--SDIEKVKKPKLDWVAVLVCIFLRFVVN 275 (488)
T ss_pred EcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhc--cchhhhccCChhHHHHHHHHHHHHHHH
Confidence 0 00112334566777777777766666655544433222111111111 101111111 11112233444444555
Q ss_pred HHHhhhhhhhcchhhhccCCcHHHHHH----HHHHHHHhhhcccccchhhh-hhhccccccchhHHHHHHHHHHHHHHHH
Q 014301 233 GVELTTDNIIAQYFYDRFGVNLQVAGT----IAASFGMANLFSRPMGGVIS-DRMGRRFGIRGRLWGLWAVQTAAGLLCV 307 (427)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~g~s~~~~~~----~~~~~~~~~~~~~~~~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (427)
+......+..+......++++.+++-. ..+..++....-.+...... .++.+|. .....+........+
T Consensus 276 ~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~------~~~~g~l~~f~~~~i 349 (488)
T KOG2325|consen 276 FIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRR------IILLGFLIFFLSYYI 349 (488)
T ss_pred HHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccce------eeeehHHHHHHhhhe
Confidence 555555666666666667776655433 33333333333222222221 1222222 011111111111111
Q ss_pred -HHh--hcc---------------------------chHHHHH-HHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehh
Q 014301 308 -LLG--RVN---------------------------SLWGSVL-VMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMT 355 (427)
Q Consensus 308 -~~~--~~~---------------------------~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~ 355 (427)
... +.. +.+..++ ..+++|.+.-.......++.++ +.|+++++..|++
T Consensus 350 ~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~ 429 (488)
T KOG2325|consen 350 FTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVF 429 (488)
T ss_pred eeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEE
Confidence 111 100 0011111 1223333333333344555554 4899999999999
Q ss_pred cchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHHhhccc
Q 014301 356 GSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSLIYFP 402 (427)
Q Consensus 356 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (427)
...+..+..++|.+. ......++++.+.+..+..++...+......+
T Consensus 430 ~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~r 477 (488)
T KOG2325|consen 430 SISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLKR 477 (488)
T ss_pred EeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988 66677788888877777666666655554443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-17 Score=147.58 Aligned_cols=382 Identities=14% Similarity=0.087 Sum_probs=241.6
Q ss_pred HHHHHHHhHhhhcc---c-cchhhhhhhhcC----CCcchhhHHHHHHHHHHHHhhcccccccccc-CCchHHHHHHHHH
Q 014301 7 AWLSLFSCFFSTFS---I-PPLIPIIRHDLN----LTDTDVGTAGMASFLGSIFSRLAMGPVCDLL-GPRVASATLSLIT 77 (427)
Q Consensus 7 ~~~~~~~~~~~~~~---~-~~~~~~i~~~~~----~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~ 77 (427)
.+.+++....-+++ + .++.-++..+++ .|+++..-+.+.|.--.-+..+++|+++||+ |+|+++..+.++.
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~ 102 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM 102 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34444444444333 2 344445555555 9999988888888777777999999999996 9999999999999
Q ss_pred HHHHHHHhchh--hHHHHHHHHHHHhhccccc-cchHHHHHcccCcc--ccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Q 014301 78 APIVLSASLVS--SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGC--VVGLANGVSAGWANMGAGVSQLLMPLIFTAI 152 (427)
Q Consensus 78 ~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l 152 (427)
.+|.++.+.+. +...+.++-.+.++|.|.+ +....++.|.+|++ +|-..++++..+.|+|+.++|.+.+.+.+
T Consensus 103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~-- 180 (498)
T COG3104 103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI-- 180 (498)
T ss_pred HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH--
Confidence 99999999984 7889999999999999999 88888999999875 46778899999999999888888888877
Q ss_pred hhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCC----cccccccc-h------------h-----hhhhhh--
Q 014301 153 TSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGN----YKEFKKTK-T------------E-----SREEKF-- 208 (427)
Q Consensus 153 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~------------~-----~~~~~~-- 208 (427)
.+||+..|...++-..+..+..+..++...... +...+... . . ...+..
T Consensus 181 -------~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (498)
T COG3104 181 -------NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSG 253 (498)
T ss_pred -------hhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999988777666665555544221111 00000000 0 0 000000
Q ss_pred ----------HHHHHhhhcC-------chHH---HHHHHHHHHHHHHhhhhhhhcchhhhc-----cCCcHHHHHHHHHH
Q 014301 209 ----------VHVLFNGLKN-------YRGW---ILGLTYGFCFGVELTTDNIIAQYFYDR-----FGVNLQVAGTIAAS 263 (427)
Q Consensus 209 ----------~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~ 263 (427)
...+.+.+++ ++.+ .+.+...+.+..+....+.+..|..+. +|++ ...++..+.
T Consensus 254 ~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQsl 332 (498)
T COG3104 254 VLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSL 332 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhh
Confidence 0000111111 1222 223333333333333344444443322 2222 223456666
Q ss_pred HHHhhhcccccchhhhhhhccccc-cchhHHHHHHHHHHHHHHHHHHhhc----------cchHHHHHHHHHHHHHhhhh
Q 014301 264 FGMANLFSRPMGGVISDRMGRRFG-IRGRLWGLWAVQTAAGLLCVLLGRV----------NSLWGSVLVMCVFSVFVQAA 332 (427)
Q Consensus 264 ~~~~~~~~~~~~g~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~ 332 (427)
..+..++.+++..++..|.++++. ++..... ..++.+++...+.+... .+.+..+...++.+++.-..
T Consensus 333 Np~~Iii~~pI~a~l~~~l~~~~~~ps~~~KF-alGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~i 411 (498)
T COG3104 333 NPFFIILFSPILAALWTKLGRGNKQPSTPIKF-ALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFI 411 (498)
T ss_pred CHHHHHHHHHHHHHHHhHhhcCCCCCCcchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 667777777777777777554422 2222222 22233333332222211 25677888889999999999
Q ss_pred hhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHHh-------hcccccchhHHHHHHHHHHHHHHHHHhh
Q 014301 333 GGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLLF-------SGSKFSKQTSISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 333 ~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (427)
.|...++... .|++..+.+++........|..++..+.. ..+.......|...+...++..+.....
T Consensus 412 SpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 412 SPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred CHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999998884 57777888888887777777777776662 2333455566666666666555554443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-20 Score=175.98 Aligned_cols=270 Identities=16% Similarity=0.154 Sum_probs=3.0
Q ss_pred hhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchh--------
Q 014301 17 STFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVS-------- 88 (427)
Q Consensus 17 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-------- 88 (427)
........++.+++.|++++++.|++.+.+-++..+..++..+..+|..|-|.+-.+.++++++.+++++-+
T Consensus 18 ~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~ 97 (539)
T PF03137_consen 18 VSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSY 97 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcc
Confidence 344467788899999999999999999999999999999999999999999999999999999999876510
Q ss_pred ------------------------------------------hHHHHHHHHHHHhhccccc-cchHHHHHcccCcccccc
Q 014301 89 ------------------------------------------SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGL 125 (427)
Q Consensus 89 ------------------------------------------~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~ 125 (427)
-+..++++.++.|+|.+.. +...+++-|..++++-+.
T Consensus 98 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~spl 177 (539)
T PF03137_consen 98 EEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPL 177 (539)
T ss_dssp ------------------------------------------------------SSS-----------------------
T ss_pred ccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCcc
Confidence 1356888999999999976 999999999999999999
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCc---------c----cchhHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 014301 126 ANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGT---------H----TAWRLAFIVPSTFQALTAIMVLIYGQDLPSGN 192 (427)
Q Consensus 126 ~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~---------~----~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (427)
..|+......+|-++|.++++.+.....|....+ + ..|..-|++.+...++..+..+.+|++.|+.+
T Consensus 178 YiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~ 257 (539)
T PF03137_consen 178 YIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTS 257 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcc
Confidence 9999988888888888888776665544422111 1 24777888889999998999999998877761
Q ss_pred cc---------cccc---cc-hh--------hhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccC
Q 014301 193 YK---------EFKK---TK-TE--------SREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFG 251 (427)
Q Consensus 193 ~~---------~~~~---~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 251 (427)
+. +.++ ++ ++ +..++..+.++++++||.+....+..........++.++.|.|++.+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~ 337 (539)
T PF03137_consen 258 ERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFG 337 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 10 0000 00 00 0113445667889999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHH-hhhcccccchhhhhhhcccc
Q 014301 252 VNLQVAGTIAASFGM-ANLFSRPMGGVISDRMGRRF 286 (427)
Q Consensus 252 ~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~ 286 (427)
.++.+++++.....+ +.++|.+++|++.+|++-+.
T Consensus 338 ~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~ 373 (539)
T PF03137_consen 338 LSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSA 373 (539)
T ss_dssp ------------------------------------
T ss_pred CCHHHHHHHHhhhhcchhheehheEEEEEEEecCcH
Confidence 999999988776655 77788899999999986653
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=149.15 Aligned_cols=271 Identities=14% Similarity=0.180 Sum_probs=218.6
Q ss_pred hhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch--------
Q 014301 16 FSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV-------- 87 (427)
Q Consensus 16 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-------- 87 (427)
+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+...|.-|-|.+-.+.++++++.+++++-
T Consensus 111 l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~ 190 (735)
T KOG3626|consen 111 LYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYE 190 (735)
T ss_pred hhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcch
Confidence 334446777788999999999999999999999999999999999999999999999999999999998771
Q ss_pred ------------h---------------------------h----HH-HHHHHHHHHhhccccc-cchHHHHHcccCccc
Q 014301 88 ------------S---------------------------S----PQ-SFILVRFLVGFCLANF-VANQFWMSSMFSGCV 122 (427)
Q Consensus 88 ------------~---------------------------~----~~-~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~ 122 (427)
+ + ++ .++++.++.|+|.... +...+++-|...+++
T Consensus 191 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~ 270 (735)
T KOG3626|consen 191 YELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN 270 (735)
T ss_pred hhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC
Confidence 0 0 22 6788899999999976 999999999999999
Q ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCC--------cc--cchhHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 014301 123 VGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVG--------TH--TAWRLAFIVPSTFQALTAIMVLIYGQDLPSGN 192 (427)
Q Consensus 123 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~--------~~--~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (427)
-+..+|+......+|-++|.+++.+...+-.+.+.. ++ ..|..-|++.+.+.++..+..+++|++.|++.
T Consensus 271 SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 271 SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 999999998777777777777777666654443111 11 24888899999999999999999999888653
Q ss_pred cc------cccc-cc------h--hhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHH
Q 014301 193 YK------EFKK-TK------T--ESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVA 257 (427)
Q Consensus 193 ~~------~~~~-~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~ 257 (427)
++ +..+ +. . .++-+++.+.++++++||.+....+...+......++.+++|-|+++++|.++..+
T Consensus 351 ~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~A 430 (735)
T KOG3626|consen 351 KRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLA 430 (735)
T ss_pred ccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHH
Confidence 21 0000 00 0 01114566778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hhhcccccchhhhhhhcccc
Q 014301 258 GTIAASFGM-ANLFSRPMGGVISDRMGRRF 286 (427)
Q Consensus 258 ~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~ 286 (427)
..+....++ +..+|.+++|++.+|++.+.
T Consensus 431 n~l~G~i~vp~~~~Gi~lGG~iikkfkl~~ 460 (735)
T KOG3626|consen 431 NILTGSIGVPAAAVGIFLGGLIIKKFKLSA 460 (735)
T ss_pred HHHhhhhhhhhhhhhhhccceeeeeecccH
Confidence 998876665 66778899999999986653
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-15 Score=137.66 Aligned_cols=301 Identities=15% Similarity=0.110 Sum_probs=218.8
Q ss_pred HHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhcccc---ccchHHHHHcccCcccc
Q 014301 47 FLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLAN---FVANQFWMSSMFSGCVV 123 (427)
Q Consensus 47 ~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~---~~~~~~~i~~~~~~~~r 123 (427)
.+...+.++..|.++||+|||..+........+......+.. +|.++ +.|+..+. .....++++|....++|
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R 146 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEER 146 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHH
Confidence 577788999999999999999999999999988888877766 44333 66666552 27778899999999999
Q ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCC-CCCCCccccc-----
Q 014301 124 GLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQD-LPSGNYKEFK----- 197 (427)
Q Consensus 124 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 197 (427)
....++.+.....+..++|.++..+.. ..|.-.+|.+..+..++..+..+...|| .+++++++.+
T Consensus 147 ~~~~gll~~~~~~~~~~~p~~~~~~~~---------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~ 217 (463)
T KOG2816|consen 147 SSSIGLLSGTFGAGLVIGPALGGYLVK---------FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELT 217 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH---------hcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccC
Confidence 999999988888888777777766665 5688888999888888777666555444 3332222100
Q ss_pred --ccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhh-hhcchhhhccCCcHHHHHHHHHHHHHhhhccccc
Q 014301 198 --KTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN-IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPM 274 (427)
Q Consensus 198 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 274 (427)
+...... .+..+.....-.+|..+.+.+...+.......-.. ..+.|+...+++++++.+.+.+.......+++.+
T Consensus 218 ~~~~~~~~~-~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~ 296 (463)
T KOG2816|consen 218 PGSLDSSHV-ADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLL 296 (463)
T ss_pred CCcccchhh-hhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111 11222223333455666666665555555544444 6688899999999999999999999999999877
Q ss_pred ch-hhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeee
Q 014301 275 GG-VISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVIS 352 (427)
Q Consensus 275 ~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~ 352 (427)
.. .+...++.|+ ....++..-.+......+..+.|..+....+ ........+...+..+ ...++++|++.
T Consensus 297 ~~~~l~~~l~~~~-------~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~~~e~g~v~ 368 (463)
T KOG2816|consen 297 LLPLLSSILGEKR-------LISLGLLSEFLQLLLFAFATETWMMFAAGVV-VALAGIVFPAIRAFASILVSPEEQGKVF 368 (463)
T ss_pred HHHHHHHHHhhhh-------HhhHHHHHHHHHHHHHHHhccchhhhHHHHH-HHhhcchhHHHHhHHHhhcccccccchh
Confidence 77 6666777775 6677777777777888888887776666554 4444566677777777 56899999999
Q ss_pred ehhcchhhhhhHHHHHHH
Q 014301 353 GMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 353 g~~~~~~~~g~~~~~~~~ 370 (427)
++...+..+.+.++|.+.
T Consensus 369 ~~is~i~~l~~~~~~~~~ 386 (463)
T KOG2816|consen 369 GIISGIEGLSGVVSPALY 386 (463)
T ss_pred hHHHHHHHHhhhhhHHHH
Confidence 999999999999999888
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-14 Score=125.12 Aligned_cols=260 Identities=14% Similarity=0.094 Sum_probs=173.7
Q ss_pred HHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhh
Q 014301 10 SLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSS 89 (427)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 89 (427)
++.+...+....+|..-.+-+++|.+..|++.+........++..++.|.++||+|||+.-+.-+++.+++++. -..++
T Consensus 42 vY~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~ 120 (354)
T PF05631_consen 42 VYLLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSN 120 (354)
T ss_pred HHHHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-Hhccc
Confidence 34445555666788777777899999999999999999999999999999999999999999999999998864 55689
Q ss_pred HHHHHHHHHHHhhccccc-cchHHHH-HcccCccccccchhh-hhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHH
Q 014301 90 PQSFILVRFLVGFCLANF-VANQFWM-SSMFSGCVVGLANGV-SAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLA 166 (427)
Q Consensus 90 ~~~l~~~r~l~G~~~~~~-~~~~~~i-~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~ 166 (427)
++.++++|++.|++.+.. .+--+++ .|.-..+.+....+- +.....++..+-.+..+.+++.+.+.. ..|-..+
T Consensus 121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~---~~g~vaP 197 (354)
T PF05631_consen 121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF---GFGPVAP 197 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh---CCCCcch
Confidence 999999999999999976 7777766 665322111111111 111111333333345555555554410 2244778
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchh
Q 014301 167 FIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYF 246 (427)
Q Consensus 167 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (427)
|........+..++....-+|...+..+ + .+.. ++..+..+.+.+||+++.+.+...+.-+..+.+.....+-+
T Consensus 198 F~~a~~~l~~~~~~I~~~W~ENyg~~~~---~--~~~~-~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL 271 (354)
T PF05631_consen 198 FDAAIVLLAVAAVLILKTWPENYGDTSS---S--SSLS-GSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPAL 271 (354)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCccc---c--cchH-HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeecee
Confidence 8887776666655544333322221111 1 1111 45556677788899999999998888888777766544444
Q ss_pred hhccCCcHHHHHHHHHHHHHhhhcccccchhhhhh
Q 014301 247 YDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDR 281 (427)
Q Consensus 247 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 281 (427)
+.. + ...--|++++.+.+...+|+.+..++..+
T Consensus 272 ~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 272 DPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred cCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 421 1 12236788888888888888777665543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=135.75 Aligned_cols=333 Identities=17% Similarity=0.098 Sum_probs=202.1
Q ss_pred ccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccC-----CchHHHHHHHHHHHHHHHHhch----hhHH
Q 014301 21 IPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLG-----PRVASATLSLITAPIVLSASLV----SSPQ 91 (427)
Q Consensus 21 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~~~~~~~~~~----~~~~ 91 (427)
.....|.+++++|+|+++.....+...+... ..++.|.++|-+- ||+-++++.++..++....+.. .+..
T Consensus 9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 3466788999999999999999999999887 6788999999873 5556666777765555555553 3566
Q ss_pred HHHHHHHHHhhccccc-cchHHHHHcccCc--cccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHH
Q 014301 92 SFILVRFLVGFCLANF-VANQFWMSSMFSG--CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFI 168 (427)
Q Consensus 92 ~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~ 168 (427)
...+.-++..+|.... ..+.+.+.|...+ ++||...+.......+|..++..+++.+.. ..++|..|.
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~---------~~~~~~~f~ 158 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD---------SFGPQGVFL 158 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh---------cCCCeEEeh
Confidence 6667778888888876 8888888888743 346676777766777777766666555443 668899999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcccc---cccc-h--hhhhhhhHHHHHhhhcCchHHHHHH-HHHHHHHHHhhhhhh
Q 014301 169 VPSTFQALTAIMVLIYGQDLPSGNYKEF---KKTK-T--ESREEKFVHVLFNGLKNYRGWILGL-TYGFCFGVELTTDNI 241 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 241 (427)
+.+++.++..+..+++.||+++.++++. +++. + ....++....+++.++.|.+|...+ ..++...........
T Consensus 159 i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~ 238 (433)
T PF03092_consen 159 ISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSAS 238 (433)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCcc
Confidence 9888887777666667665322221111 1110 0 1101344556677778888887766 332222221111110
Q ss_pred hcchhhhccC---CcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHH-Hhhc-----
Q 014301 242 IAQYFYDRFG---VNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVL-LGRV----- 312 (427)
Q Consensus 242 ~~~~l~~~~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----- 312 (427)
.-.+..+..+ +++...+.+..+..++.++|..+..+...+..-|+ ......++..+..+. ....
T Consensus 239 ~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~-------~~~~t~~~~~~~~l~~~~lv~~~n~ 311 (433)
T PF03092_consen 239 SFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRR-------IFVVTTLVSVLASLFDLLLVTRWNL 311 (433)
T ss_pred EEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-------HHHHHHHHHHHHhcccEEEEEEEee
Confidence 1112233445 88888888776666666666655554433333332 222222222222111 1111
Q ss_pred ----cchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 313 ----NSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 313 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
++.+....-.++..+.....+-+...+.++ .|+...|+.+++..++.++|..++..+.
T Consensus 312 ~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg 374 (433)
T PF03092_consen 312 DLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLG 374 (433)
T ss_pred eeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222223334444444444444555554 5888899999999999998888887777
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-15 Score=117.92 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCcc
Q 014301 43 GMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGC 121 (427)
Q Consensus 43 ~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~ 121 (427)
.+.+.++..+++++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+.. +....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567888899999999999999999999999999999998888999999999999999999876 77888899999999
Q ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcC
Q 014301 122 VVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQ 186 (427)
Q Consensus 122 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~ 186 (427)
+|++..++.+....+|..+++.+.+.+.+ ..+|++.+++.+...++..+..++..+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ---------FLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhc---------ccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999998888888888777776654 668999999988887777666665543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-14 Score=132.95 Aligned_cols=163 Identities=11% Similarity=0.092 Sum_probs=128.6
Q ss_pred cchhhhhhhhcCCCc--------chhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchh----h
Q 014301 22 PPLIPIIRHDLNLTD--------TDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVS----S 89 (427)
Q Consensus 22 ~~~~~~i~~~~~~s~--------~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~ 89 (427)
....|...++.+.++ ++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+....+ +
T Consensus 228 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~ 307 (418)
T TIGR00889 228 NIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFG 307 (418)
T ss_pred HHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence 344455556666443 5679999999999999999999999999999999999999888876666532 3
Q ss_pred HHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhh-hhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHH
Q 014301 90 PQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSA-GWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAF 167 (427)
Q Consensus 90 ~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f 167 (427)
++.+++.+++.|++.+.. +....++.|++|+++|++++++.+ ....+|..+||.+++.+.+.... .+..||+.+|
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~---~~~~~~~~~f 384 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA---YGTFDWQTMW 384 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc---ccCCchHHHH
Confidence 466788899999998876 777788899999999999999997 56778888888888877764321 0125799999
Q ss_pred HHHHHHHHHHHHHHHHHcCC
Q 014301 168 IVPSTFQALTAIMVLIYGQD 187 (427)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~ 187 (427)
.+.++..++..++.+++.++
T Consensus 385 ~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 385 LFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 99988888877777666543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.3e-14 Score=130.70 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=129.2
Q ss_pred cccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 014301 20 SIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFL 99 (427)
Q Consensus 20 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 99 (427)
......|.+.++.|. .+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++..+....+|.+.+++.+++
T Consensus 234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (399)
T PRK05122 234 TIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL 311 (399)
T ss_pred HHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 334445555555565 345677788889999999999999999999999999988888888888888888888899999
Q ss_pred Hhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHH
Q 014301 100 VGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTA 178 (427)
Q Consensus 100 ~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~ 178 (427)
.|++.+.. +.....+.|..|+++|+++.++.+...++|..+++.+.+.+.+ ..||+..|++.++..++..
T Consensus 312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g~~~~~~~~~~~~~~~~ 382 (399)
T PRK05122 312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS---------WFGYPSIFLAAALAALLGL 382 (399)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HcCHHHHHHHHHHHHHHHH
Confidence 99998876 6666777889999999999999988888888777666665554 5689999999988888877
Q ss_pred HHHHHHcCCCCCC
Q 014301 179 IMVLIYGQDLPSG 191 (427)
Q Consensus 179 ~~~~~~~~~~~~~ 191 (427)
+..+.+++++|++
T Consensus 383 ~~~~~~~~~~~~~ 395 (399)
T PRK05122 383 ALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHhccccccc
Confidence 7777776654443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=122.29 Aligned_cols=177 Identities=13% Similarity=0.149 Sum_probs=146.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHH
Q 014301 220 RGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQ 299 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 299 (427)
.+....+.+......--.+..-.|.. .++.++|..+.|.+.+.+.+..-++..+.|.++||.+.|+ .+..++
T Consensus 30 if~~~fiGYa~fYl~RknF~~a~p~l-~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~-------fm~~gL 101 (448)
T COG2271 30 IFLSIFIGYAAFYLTRKNFNLAMPAL-IEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY-------FMAFGL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce-------eehHHH
Confidence 34445555555555555555445544 4555899999999999999999999999999999999998 888999
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH---hhccc
Q 014301 300 TAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL---FSGSK 375 (427)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~---~~~~~ 375 (427)
+++++..+++.+.++.+.+.+...+.|.+.+..+|+...... -.++++||+..++.|+..++|+.+.|.+. ....+
T Consensus 102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999977776 56899999999999999999999888887 45566
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhccccC
Q 014301 376 FSKQTSISVMGLMMIVCTLPVSLIYFPQW 404 (427)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (427)
++|+.+|+.-++++++..+..+...+.+.
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 79999999999888877777666555443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=130.05 Aligned_cols=166 Identities=18% Similarity=0.272 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHH
Q 014301 222 WILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTA 301 (427)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 301 (427)
+...+.++..+..........|.+.++ +|+|+.+.++..+...++..+++++.|++.||+|+|+ .+..+..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-------~~~~~~~~ 97 (434)
T PRK11663 26 ITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARY-------FMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCch-------hHHHHHHH
Confidence 334444544444445666677777655 7999999999999999999999999999999999997 56666666
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccch
Q 014301 302 AGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQ 379 (427)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~ 379 (427)
..+........++.+...+..++.|++.+...+....+..+ .++++|++++|+.+....+|..++|.+. ...+..+|+
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 66666677677777777777777888888877877777775 4778899999999999999999999888 666678899
Q ss_pred hHHHHHHHHHHHHHHH
Q 014301 380 TSISVMGLMMIVCTLP 395 (427)
Q Consensus 380 ~~~~~~~~~~~~~~~~ 395 (427)
..|...++..++..+.
T Consensus 178 ~~f~~~~i~~~~~~~~ 193 (434)
T PRK11663 178 YGMMIAGIIAIVVGLF 193 (434)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998877665544433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-11 Score=112.55 Aligned_cols=333 Identities=13% Similarity=0.049 Sum_probs=233.8
Q ss_pred chhhhhhhh-cCCCcchhh-HHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 014301 23 PLIPIIRHD-LNLTDTDVG-TAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLV 100 (427)
Q Consensus 23 ~~~~~i~~~-~~~s~~~~g-~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 100 (427)
...|.+.+. .|++..|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+..+..
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~y 104 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFY 104 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 334455554 788888874 555666677778888999999999999999999999999999999999999999999999
Q ss_pred hhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHH
Q 014301 101 GFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180 (427)
Q Consensus 101 G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 180 (427)
|++.+...+..+++-...|+++-.++.+...+..-+|..++.++|..+... +..+.+....+......+..+.
T Consensus 105 g~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-------~~~sy~~L~~isl~~~~~a~~~ 177 (412)
T PF01770_consen 105 GLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-------GGVSYFQLNYISLASVSLALLI 177 (412)
T ss_pred HHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999997778889889999988888777877777776666542 1446666666665555555556
Q ss_pred HHHHcCCCCCC---C-----------c-cc---ccccc------hh-h---h---hhhhHHHHHhhhcCchHHHHHHHHH
Q 014301 181 VLIYGQDLPSG---N-----------Y-KE---FKKTK------TE-S---R---EEKFVHVLFNGLKNYRGWILGLTYG 229 (427)
Q Consensus 181 ~~~~~~~~~~~---~-----------~-~~---~~~~~------~~-~---~---~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (427)
.+++|+.++.. + + ++ .+++. +. . . -+..++.+++..+||.++...+-+.
T Consensus 178 ~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa 257 (412)
T PF01770_consen 178 ALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWA 257 (412)
T ss_pred HHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 66666532110 0 0 00 00000 00 0 0 0234566777889999988888887
Q ss_pred HHHHHHhhhhhhhcchhhhc--cCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHH
Q 014301 230 FCFGVELTTDNIIAQYFYDR--FGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCV 307 (427)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (427)
+.........++......+. -+-+....|..-+...+.+.++.+..|++-.+..+. ....+.....+.+..++
T Consensus 258 ~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-----~~l~l~~~S~l~a~~L~ 332 (412)
T PF01770_consen 258 FATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-----GELALGVFSLLQAGLLF 332 (412)
T ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-----HHHHHHHHHHHHHHHHH
Confidence 77777777777666665443 133344567777777777778888888874444432 22344455555566677
Q ss_pred HHhhccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHH
Q 014301 308 LLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQ 367 (427)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~ 367 (427)
.+...++.|...++.++++..+....+....-++ ++..|.-|-..|+..+...+-..+-.
T Consensus 333 lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT 393 (412)
T PF01770_consen 333 LMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTILT 393 (412)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHheE
Confidence 7788889999999999999998888777766555 67788888888887766555444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=131.21 Aligned_cols=150 Identities=10% Similarity=0.069 Sum_probs=122.0
Q ss_pred cCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-cch
Q 014301 32 LNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-VAN 110 (427)
Q Consensus 32 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~ 110 (427)
.+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++..+.++++|.+.+++.+++.|++.+.. +..
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666778899999999999999999999999999999999999999999889899999999999999999988775 667
Q ss_pred HHHHHcccCccccccchhh-hhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014301 111 QFWMSSMFSGCVVGLANGV-SAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLP 189 (427)
Q Consensus 111 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~ 189 (427)
..++.|.+|++.|+...+. ++....+|..+++.+.+.+.+ ..|||..|.+.++..++..++.++..++++
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~---------~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD---------SIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH---------hhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 7888999999988887655 455556666666666555544 669999999988888776666665555434
Q ss_pred C
Q 014301 190 S 190 (427)
Q Consensus 190 ~ 190 (427)
+
T Consensus 408 ~ 408 (420)
T PRK09528 408 E 408 (420)
T ss_pred h
Confidence 3
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=129.51 Aligned_cols=171 Identities=11% Similarity=-0.032 Sum_probs=134.1
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHH
Q 014301 219 YRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAV 298 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 298 (427)
|+++.+.+..++..........++|.|+++++|+++.+.++..+...+..++++++.|+++||+|||+ .+..+
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~-------~~~~~ 79 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR-------YMLLA 79 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch-------hHHHH
Confidence 45677777788888888888899999999889999999999999999999999999999999999987 44555
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccc
Q 014301 299 QTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKF 376 (427)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~ 376 (427)
..+..+......+.++.+..++...+.+.+.+...+...++..| .++++|+++.|+.+...++|..++|.+. ...+ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~ 158 (395)
T PRK10054 80 ITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q 158 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 55555555566666676666655556666666556666777664 4788899999999999999999999988 4433 5
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 014301 377 SKQTSISVMGLMMIVCTLPVS 397 (427)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~ 397 (427)
+|+..|...+++.++..+...
T Consensus 159 g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 159 SINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred ccCcHHHHHHHHHHHHHHHHH
Confidence 788888877777666654443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=125.95 Aligned_cols=170 Identities=22% Similarity=0.303 Sum_probs=144.5
Q ss_pred HHHHHHHHHhHhhhccccchhhhhhhhc-CCCcchhhHHHHHHHHHHHHhhccccccccccCCch-HHHHHHHHHHHHHH
Q 014301 5 HLAWLSLFSCFFSTFSIPPLIPIIRHDL-NLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRV-ASATLSLITAPIVL 82 (427)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~ 82 (427)
....+..+.............|.+.++. |.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (352)
T cd06174 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL 257 (352)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3444445555555555667777776665 999999999999999999999999999999999999 99999999999999
Q ss_pred HHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCccc
Q 014301 83 SASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHT 161 (427)
Q Consensus 83 ~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~ 161 (427)
.....++.+.+.+..++.|++.+.. +....++.|..|+++|++.+++.+...++|..+++.+.+.+.+ ..
T Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~---------~~ 328 (352)
T cd06174 258 LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD---------TG 328 (352)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cc
Confidence 9999999999999999999999987 8888899999999999999999999999988877777766654 67
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 014301 162 AWRLAFIVPSTFQALTAIMVLI 183 (427)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~ 183 (427)
+|+..+.+.++..++..+..++
T Consensus 329 ~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 329 GYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred CcchHHHHHHHHHHHHHHHhee
Confidence 9999999999888877665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-13 Score=126.48 Aligned_cols=158 Identities=14% Similarity=0.085 Sum_probs=132.2
Q ss_pred ccchhhhhhhh-cCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 014301 21 IPPLIPIIRHD-LNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFL 99 (427)
Q Consensus 21 ~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 99 (427)
.....|.+.++ +|.++.+.|++.+...++..++.++.+++.||.++++.+..+..+.+++.++..+.++.+...++.++
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 44456766666 89999999999999999999999999999999888888888888888888888888888888888999
Q ss_pred Hhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHH
Q 014301 100 VGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTA 178 (427)
Q Consensus 100 ~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~ 178 (427)
.|++.+.. +...+++.|..|+++|++++++.+...++|..+|+.+.+.+.+ ..|++..++..++..++..
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~---------~~g~~~~~~~~~~~~~~~~ 392 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA---------MMTPVASASASGFGLLIIG 392 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH---------HhchhhHHHHHHHHHHHHH
Confidence 99988766 5566788999999999999999999999999888888887776 5688888888887777766
Q ss_pred HHHHHHcCC
Q 014301 179 IMVLIYGQD 187 (427)
Q Consensus 179 ~~~~~~~~~ 187 (427)
+..+...++
T Consensus 393 ~~~~~~~~~ 401 (417)
T PRK10489 393 VLLLLVLGE 401 (417)
T ss_pred HHHHHhccc
Confidence 665555443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.3e-13 Score=127.16 Aligned_cols=172 Identities=11% Similarity=0.004 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcchhhhc--cCCcHHHHHHHHHHHHHhhhcccccchhhhhh-hccccccchhHHHHH
Q 014301 220 RGWILGLTYGFCFGVELTTDNIIAQYFYDR--FGVNLQVAGTIAASFGMANLFSRPMGGVISDR-MGRRFGIRGRLWGLW 296 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~ 296 (427)
.++.+.+..++....+++...++|.|++++ +|+++.+++...+...+...++.+++|+++|| +|||+ .+.
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~-------~l~ 83 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK-------TMV 83 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH-------HHH
Confidence 345566666666788889999999999887 89999999999999999999999999999999 89997 666
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcC---cceeeeehhcchhhhhhHHHHHHH-h
Q 014301 297 AVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKR---SLGVISGMTGSGGTVGAVVTQMLL-F 371 (427)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~---~~g~~~g~~~~~~~~g~~~~~~~~-~ 371 (427)
.+..+..++...+...++.+...+...+.+++.+...+...++..+. +++ +|+++.++.+...++|..++|.+. .
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~ 163 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence 66667777767766666666666777788888888888887777653 443 488899999999999999999998 6
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHh
Q 014301 372 SGSKFSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
..+..+|+..|...++..+++.+....
T Consensus 164 l~~~~g~~~~f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 164 IAENYGYHVGFNLAAVGMVIGLLTFFA 190 (475)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 777778999998877666555444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-13 Score=127.55 Aligned_cols=162 Identities=13% Similarity=0.112 Sum_probs=113.6
Q ss_pred hccccchhhhhh-hhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHH---HhchhhHHHH
Q 014301 18 TFSIPPLIPIIR-HDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLS---ASLVSSPQSF 93 (427)
Q Consensus 18 ~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l 93 (427)
.+......|.+. +++|.+..+.++..+...++..++.+..|+++||+|||+.+..+.++..++... ...+++...+
T Consensus 266 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (490)
T PRK10642 266 YYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLI 345 (490)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 334445566654 668998888888888889999999999999999999999988887654433222 2234567788
Q ss_pred HHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHH
Q 014301 94 ILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPST 172 (427)
Q Consensus 94 ~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~ 172 (427)
++++++.|++.+.. .....++.|.+|++.|+++++........+..++|.+.+.+.+. ..+|+.+++...+
T Consensus 346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~--------~~~~~~~~~~~~~ 417 (490)
T PRK10642 346 FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES--------TQNLMMPAYYLMV 417 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCchHHHHHHHH
Confidence 88999999877655 55667778999999999999875433444444444444443321 2357877777777
Q ss_pred HHHHHHHHHHHHcCC
Q 014301 173 FQALTAIMVLIYGQD 187 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~ 187 (427)
.+++..+..++++|+
T Consensus 418 ~~~i~~~~~~~~pes 432 (490)
T PRK10642 418 VAVIGLITGVTMKET 432 (490)
T ss_pred HHHHHHHHHHHhccc
Confidence 776666666666554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-13 Score=126.91 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=130.6
Q ss_pred HHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhH
Q 014301 11 LFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSP 90 (427)
Q Consensus 11 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 90 (427)
.+.............|.+.++.|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.+.....++.
T Consensus 229 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (406)
T PRK11551 229 YFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSF 308 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 33333333344445678888899999999999999999999999999999999999999988777777777777777888
Q ss_pred HHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHH
Q 014301 91 QSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIV 169 (427)
Q Consensus 91 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~ 169 (427)
+.+.+..++.|++.+.. +...+++.|.+|+++|++..++.+....+|..+|+.+++.+.+. ..+|...++.
T Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~--------~~~~~~~~~~ 380 (406)
T PRK11551 309 AGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL--------GRSTVGVIGA 380 (406)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc--------CCchHHHHHH
Confidence 88888888888877655 77778889999999999999999999988888877777666541 2366677776
Q ss_pred HHHHHHHHHHHHHHHcC
Q 014301 170 PSTFQALTAIMVLIYGQ 186 (427)
Q Consensus 170 ~~~~~~~~~~~~~~~~~ 186 (427)
.....++..+..++..+
T Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 381 SIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 66666555555555543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=126.67 Aligned_cols=148 Identities=17% Similarity=0.102 Sum_probs=122.4
Q ss_pred ccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhH--HHHHHHHH
Q 014301 21 IPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSP--QSFILVRF 98 (427)
Q Consensus 21 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~ 98 (427)
.....+.+.++++.++.+.+++.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++. ..++...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T TIGR00890 224 LIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA 303 (377)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 3445566678899999999999999999999999999999999999999999999888888877776643 33456678
Q ss_pred HHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHH
Q 014301 99 LVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALT 177 (427)
Q Consensus 99 l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~ 177 (427)
+.|++.+.. .....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+ ..||++.|.+.++..++.
T Consensus 304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT---------EIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh---------hhchhhHHHHHHHHHHHh
Confidence 888888765 6677788999999999999999998888888877777766654 679999999888766654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-13 Score=132.79 Aligned_cols=136 Identities=13% Similarity=0.040 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHccc
Q 014301 40 GTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMF 118 (427)
Q Consensus 40 g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~ 118 (427)
.+...+..++..++.++.|+++||+|||++++.+.++.+++.++.+++++...+++.+++.|++.++. +...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677889999999999999999999999999999999999999988888888898888877765 77888899999
Q ss_pred CccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHc
Q 014301 119 SGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYG 185 (427)
Q Consensus 119 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 185 (427)
|.++|++++|+.+....+|.++||.+++.+.. .+...+|++.++..++.+++.+++|
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----------~~~~~pf~i~a~~lll~~ll~~~LP 734 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVG----------ITKAAPILFASAALACGGLLALKLP 734 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999888888776653 2456778887777777666666664
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.9e-13 Score=123.97 Aligned_cols=154 Identities=14% Similarity=0.128 Sum_probs=122.5
Q ss_pred ccchhhh-hhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 014301 21 IPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFL 99 (427)
Q Consensus 21 ~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 99 (427)
+....|. +++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 314 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL 314 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344554 557789999999999888888888899999999999999998887776666555555567788888889999
Q ss_pred Hhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHH
Q 014301 100 VGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTA 178 (427)
Q Consensus 100 ~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~ 178 (427)
.+++.+.. .....+..|..| ++|+++.++.+...++|..+++.+++.+.+ +.+|+..|++.+++.++..
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~---------~~g~~~~~~~~~~~~~~~~ 384 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAE---------IWNYHAVFWFALVMIIATL 384 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHH
Confidence 88887765 555667788887 469999999988888888888888777765 5699999998888777766
Q ss_pred HHHHHH
Q 014301 179 IMVLIY 184 (427)
Q Consensus 179 ~~~~~~ 184 (427)
+..++.
T Consensus 385 ~~~~~~ 390 (393)
T PRK15011 385 FCLLRI 390 (393)
T ss_pred HHHHhh
Confidence 666655
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.7e-13 Score=123.04 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=126.8
Q ss_pred HHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 014301 230 FCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLL 309 (427)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (427)
........+....| ++.+++|.++.+.+++.+...++..++.++.|+++||+|||+ .+..+..+..+.....
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~~~ 77 (379)
T TIGR00881 6 AYYLVRKNFALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV-------FLPIGLILCAIVNLFF 77 (379)
T ss_pred HHHHhHHhhhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCee-------hhHHHHHHHHHHHHHH
Confidence 33344444455555 455678999999999999999999999999999999999997 5566666666666666
Q ss_pred hhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHH-HH-hhcccccchhHHHHHH
Q 014301 310 GRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQM-LL-FSGSKFSKQTSISVMG 386 (427)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~-~~-~~~~~~~~~~~~~~~~ 386 (427)
...++.+...+..++.|++.+...+...++..+. |+++|+++.++.+....+|..++|. +. ...+..+|+..+...+
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (379)
T TIGR00881 78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPG 157 (379)
T ss_pred HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 6677888888888889999888888888888864 7788999999999999999999994 44 5566678888888777
Q ss_pred HHHHHHHHHHHhh
Q 014301 387 LMMIVCTLPVSLI 399 (427)
Q Consensus 387 ~~~~~~~~~~~~~ 399 (427)
++.++..+.....
T Consensus 158 ~~~~~~~~~~~~~ 170 (379)
T TIGR00881 158 IIAIIVSLICFLL 170 (379)
T ss_pred HHHHHHHHHHhee
Confidence 6666555444433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=123.98 Aligned_cols=158 Identities=18% Similarity=0.273 Sum_probs=126.7
Q ss_pred cccchhhhhhhhcCCCcch----hhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 014301 20 SIPPLIPIIRHDLNLTDTD----VGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFIL 95 (427)
Q Consensus 20 ~~~~~~~~i~~~~~~s~~~----~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (427)
...+..|.+.++.+.+..+ .+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
T PRK09874 237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGI 316 (408)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3445556555554333332 456667778888899999999999999999999999888888887788888899999
Q ss_pred HHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHH
Q 014301 96 VRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQ 174 (427)
Q Consensus 96 ~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~ 174 (427)
.+++.|++.+.. +.....+.+..|+++|++.+++.+....+|..+|+.+++.+.+ ..+|+..|++.++..
T Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~---------~~g~~~~f~~~~~~~ 387 (408)
T PRK09874 317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA---------NYGFRAVFLVTAGVV 387 (408)
T ss_pred HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh---------hcchhHHHHHHHHHH
Confidence 999999999876 7777788888999999999999998888998888887776665 679999999999888
Q ss_pred HHHHHHHHHHcC
Q 014301 175 ALTAIMVLIYGQ 186 (427)
Q Consensus 175 ~~~~~~~~~~~~ 186 (427)
++..+..++..+
T Consensus 388 l~~~~~~~~~~~ 399 (408)
T PRK09874 388 LFNAVYSWNSLR 399 (408)
T ss_pred HHHHHHHHHHHH
Confidence 887766655433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=121.12 Aligned_cols=154 Identities=11% Similarity=0.066 Sum_probs=122.0
Q ss_pred hhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHH-HHHhchhhHHHHHHHHHHHhh
Q 014301 24 LIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIV-LSASLVSSPQSFILVRFLVGF 102 (427)
Q Consensus 24 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~ 102 (427)
..|.+.+++|.|+.+.+++.+...++..+++++.|+++||+|||+... +..+..++. ......++.+.+++..++.|+
T Consensus 228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~ 306 (390)
T PRK03545 228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGI 306 (390)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 344556668999999999999999999999999999999999887644 444433333 334556788888889999999
Q ss_pred ccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHH
Q 014301 103 CLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMV 181 (427)
Q Consensus 103 ~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 181 (427)
+.+.. +.....+.|..| ++|++++++.+....+|..+|+.+++.+.+ +.|++..|++.+.+.++..+..
T Consensus 307 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~---------~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 307 AIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL---------HLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccChhHHHHHHHHHHHHHHHHH
Confidence 88765 666677777765 688999999998889999888888887776 7899999999998888877776
Q ss_pred HHHcCCC
Q 014301 182 LIYGQDL 188 (427)
Q Consensus 182 ~~~~~~~ 188 (427)
+...+++
T Consensus 377 ~~~~~~~ 383 (390)
T PRK03545 377 ILIFRRF 383 (390)
T ss_pred HHHcccc
Confidence 6665543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=122.80 Aligned_cols=155 Identities=17% Similarity=0.086 Sum_probs=126.6
Q ss_pred ccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 014301 19 FSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRF 98 (427)
Q Consensus 19 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 98 (427)
.......|.+.++.+.+ +.++..+.+.++..+++++.|++.||+|+||.+..+..+.+++.++..+.++.+.+++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (392)
T PRK12382 233 AVIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAA 310 (392)
T ss_pred hHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 33444455555666654 3566677788888999999999999999999999999998888888888888888888999
Q ss_pred HHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHH
Q 014301 99 LVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALT 177 (427)
Q Consensus 99 l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~ 177 (427)
+.|++.+.. +.....+.|.+|+++|+++.++.+....+|..+++.+.+.+.+ +.||+..|.+.++..++.
T Consensus 311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~---------~~g~~~~~~~~~~~~~~~ 381 (392)
T PRK12382 311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT---------SFGYPSVFLAGAISAVLG 381 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCchHHHHHHHHHHHHH
Confidence 999998876 6677788899999999999999998888888888777776665 679999999998888777
Q ss_pred HHHHHHH
Q 014301 178 AIMVLIY 184 (427)
Q Consensus 178 ~~~~~~~ 184 (427)
.+..+..
T Consensus 382 ~~~~~~~ 388 (392)
T PRK12382 382 IIVTILS 388 (392)
T ss_pred HHHHHhh
Confidence 6665544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=122.12 Aligned_cols=172 Identities=10% Similarity=0.075 Sum_probs=128.5
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhh-ccccccchhHHHHHH
Q 014301 219 YRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRM-GRRFGIRGRLWGLWA 297 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 297 (427)
+.++..........+.+++...++|.|+.+.+|+++.+++.....+.....++.+++|+++||+ |||+ ....
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr-------~ili 81 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM-------AVML 81 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH-------HHHH
Confidence 3456666666677788899999999999998999999999999999999999999999999999 9987 4555
Q ss_pred HHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhhhhhhhhhccccc-CcC--cceeeeehhcchhhhhhHHHHHHH-hh
Q 014301 298 VQTAAGLLCVLLGRVN-SLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKR--SLGVISGMTGSGGTVGAVVTQMLL-FS 372 (427)
Q Consensus 298 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~--~~g~~~g~~~~~~~~g~~~~~~~~-~~ 372 (427)
+..+..++...+...+ +.....+...+..++.+...+...++..|. |++ +|.++.++.+...++|+.++|.+. ..
T Consensus 82 G~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L 161 (493)
T PRK15462 82 GALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA 161 (493)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444443322 222233444455566666666666777764 544 699999999999999999999999 77
Q ss_pred cccccchhHHHHHHHHHHHHHHHHH
Q 014301 373 GSKFSKQTSISVMGLMMIVCTLPVS 397 (427)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (427)
.+..+|+..|...++..+++.+...
T Consensus 162 ~~~~Gw~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 162 QEEYSWAMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred HhhhChHHHHHHHHHHHHHHHHHHH
Confidence 7778999999887766655555443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=123.03 Aligned_cols=173 Identities=16% Similarity=0.093 Sum_probs=120.4
Q ss_pred CchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHH
Q 014301 218 NYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWA 297 (427)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 297 (427)
++.++...+...........+....| ++++. |.++.+.++..+...++..++.++.|++.||+|||+ ....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~-------~~~~ 96 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMP-YLVEQ-GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRV-------FLPA 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhH-HHHHc-CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCce-------ehHH
Confidence 34444444444444444444444455 45554 999999999999999999999999999999999987 3344
Q ss_pred HHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH--
Q 014301 298 VQTAAGLLCVLLGRV----NSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-- 370 (427)
Q Consensus 298 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-- 370 (427)
+..+..+........ .+.+...+..++.|++.+..++.......+ .|+++||+++|+.+....+|+.++|.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 97 GLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence 444444443333322 344455566677788877777766666665 5788999999999999999999988776
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHhh
Q 014301 371 FSGSKFSKQTSISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (427)
...+..+|+..|...+++.++..+.....
T Consensus 177 ~~~~~~~w~~~f~~~~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 177 GMAWFNDWHAALYFPAICAIIVALFAFAM 205 (438)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34445789999988887776655544433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=120.54 Aligned_cols=151 Identities=13% Similarity=0.150 Sum_probs=117.8
Q ss_pred cchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHh
Q 014301 22 PPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVG 101 (427)
Q Consensus 22 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 101 (427)
...+|.+.++.|.++.+.++..+...++..+++++.|++.||+|+|+.+..+..+..++..... + .......+++.|
T Consensus 220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g 296 (381)
T PRK03633 220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG 296 (381)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence 3456777778899999999999999999999999999999999999999888888777665443 2 233445677788
Q ss_pred hccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHH
Q 014301 102 FCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180 (427)
Q Consensus 102 ~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 180 (427)
++.... +...+.+.|..|+++++...+......++|..+||.+++.+.+ +.+|++.|.+.+...++..+.
T Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~---------~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ---------NYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCccHHHHHHHHHHHHHHHH
Confidence 776654 7788888999988888877887777777888777777666655 678999999988877766554
Q ss_pred HHHH
Q 014301 181 VLIY 184 (427)
Q Consensus 181 ~~~~ 184 (427)
.++.
T Consensus 368 ~~~~ 371 (381)
T PRK03633 368 LLRK 371 (381)
T ss_pred HHhc
Confidence 4444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.1e-13 Score=121.68 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHH
Q 014301 226 LTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLL 305 (427)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (427)
+..++...........+|.++.+++|.++.+.++..+...++..++.++.|+++||+|||+ .+..+..+..+.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~l~~~~~~~~~~ 75 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR-------VLIIGLLLFALG 75 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-------eEeehhhhhhhH
Confidence 3444555555556666776777888999999999999999999999999999999999987 555555555555
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHH
Q 014301 306 CVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSIS 383 (427)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~ 383 (427)
.....+.++.+..++..++.|++.+...+....+..+. ++++|+++++..+....+|..++|.+. ...+..+|+..+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~ 155 (352)
T PF07690_consen 76 SLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFL 155 (352)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHH
T ss_pred HHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccc
Confidence 33333436666888888999999999999998888854 777999999999999999999999998 6667888999999
Q ss_pred HHHHHHHHHHHHHHh
Q 014301 384 VMGLMMIVCTLPVSL 398 (427)
Q Consensus 384 ~~~~~~~~~~~~~~~ 398 (427)
..++..++..++...
T Consensus 156 ~~~~~~~~~~il~~~ 170 (352)
T PF07690_consen 156 ISAILSLIAAILFIL 170 (352)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred cccchhhhhhhhHhh
Confidence 988888887764333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=120.75 Aligned_cols=152 Identities=13% Similarity=0.150 Sum_probs=122.2
Q ss_pred chhhh-hhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHh
Q 014301 23 PLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVG 101 (427)
Q Consensus 23 ~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 101 (427)
...|. +.+++|.++.+.+++.+.......++.++.|++.||+|||+.+..+.....+........++.+.+.+.+++.|
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 299 (375)
T TIGR00899 220 INMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNA 299 (375)
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 45778999999999988888888888999999999999999998887776666666666788888888999999
Q ss_pred hccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHH
Q 014301 102 FCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180 (427)
Q Consensus 102 ~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 180 (427)
++.+.. +....++.|..|+ ++++++++.+...++|..+++.+++.+.+ ..||+..|++.++..++..+.
T Consensus 300 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~---------~~g~~~~~~~~~~~~~~~~~~ 369 (375)
T TIGR00899 300 IFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE---------RWSYHAVYWFAIVMLIVALFC 369 (375)
T ss_pred HHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------hccchhHHHHHHHHHHHHHHH
Confidence 988865 6667778888865 56799999988888888888877777665 668999999988887776665
Q ss_pred HHHH
Q 014301 181 VLIY 184 (427)
Q Consensus 181 ~~~~ 184 (427)
..++
T Consensus 370 ~~~~ 373 (375)
T TIGR00899 370 LLLI 373 (375)
T ss_pred Hhee
Confidence 5443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=122.33 Aligned_cols=167 Identities=12% Similarity=0.055 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHH
Q 014301 222 WILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTA 301 (427)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 301 (427)
+.+....++.....+....+++.|++++.|.|+.+.|+..+...+.....+++.|+++||++||+ .+..+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~-------~l~~~~~~ 85 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKP-------MIVTGMLM 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchH-------HHHHHHHH
Confidence 44556666777777888889999998889999999999999999999999999999999999987 56666667
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccch
Q 014301 302 AGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQ 379 (427)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~ 379 (427)
..+........++.+...+..++.|++.+...+...++..+ .|+|+|+++.|+.+...++|..++|.+. ... ..+|+
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~ 164 (400)
T PRK11646 86 RAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFR 164 (400)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHH
Confidence 77666666667788877788888888887777777777775 5888999999999999999999999988 444 56888
Q ss_pred hHHHHHHHHHHHHHHHH
Q 014301 380 TSISVMGLMMIVCTLPV 396 (427)
Q Consensus 380 ~~~~~~~~~~~~~~~~~ 396 (427)
..+...++..++..+..
T Consensus 165 ~~f~~~~~~~~~~~i~~ 181 (400)
T PRK11646 165 LVCATGAVLFVLAAAFN 181 (400)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887776666554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=124.12 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=113.7
Q ss_pred ccccchhhh-hhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHH--HHhchhhHHHHHH
Q 014301 19 FSIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVL--SASLVSSPQSFIL 95 (427)
Q Consensus 19 ~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 95 (427)
.......|. +++++|.|..+.++..+...++..++.+++|+++||+|||+.+.....+..++.. .....++.+...+
T Consensus 275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (467)
T PRK09556 275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA 354 (467)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 334555674 5577999999999999999999999999999999999999987765554443332 2233456667778
Q ss_pred HHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhh-hHHHHHHHHHHHHHHHhh-cc--CCcccchhHHHHHH
Q 014301 96 VRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANM-GAGVSQLLMPLIFTAITS-LN--VGTHTAWRLAFIVP 170 (427)
Q Consensus 96 ~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~l~~-~~--~~~~~~wr~~f~~~ 170 (427)
.+++.|+..... ........|.+|+++||.+.|+.+...++ |..+++.+.+.+.+...+ .. .....+|+..|++.
T Consensus 355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~ 434 (467)
T PRK09556 355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAAL 434 (467)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHH
Confidence 888888654333 33345667999999999999999877775 555555554444430000 00 00035799999988
Q ss_pred HHHHHHHHHHHHHH
Q 014301 171 STFQALTAIMVLIY 184 (427)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (427)
++..++..+..+++
T Consensus 435 ~~~~~~~~~~~~~~ 448 (467)
T PRK09556 435 DIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777665555444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-12 Score=118.92 Aligned_cols=160 Identities=8% Similarity=-0.030 Sum_probs=131.2
Q ss_pred HHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchh
Q 014301 9 LSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVS 88 (427)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 88 (427)
+..++............|.+.+|+|.++.+.|.+.+...++..+..+..+++.||+|+|+.+..+.+...+.....++++
T Consensus 212 ~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~ 291 (382)
T TIGR00902 212 AAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE 291 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh
Confidence 33444444454555566777678999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhh-hhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHH
Q 014301 89 SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSA-GWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLA 166 (427)
Q Consensus 89 ~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~ 166 (427)
|.+.+++.++++|+..+.. +....++.+. |+++|++..++++ ....+|..+|+.+++.+.+ +.|+ ..
T Consensus 292 ~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~---------~~g~-~~ 360 (382)
T TIGR00902 292 AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP---------TLGA-GT 360 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hccH-HH
Confidence 9999999999999999987 8888899887 8889999899875 3556777777777776665 5675 66
Q ss_pred HHHHHHHHHHHHH
Q 014301 167 FIVPSTFQALTAI 179 (427)
Q Consensus 167 f~~~~~~~~~~~~ 179 (427)
|+..++.+++..+
T Consensus 361 ~~~~~~~~~~~~~ 373 (382)
T TIGR00902 361 FVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-13 Score=127.59 Aligned_cols=160 Identities=12% Similarity=0.109 Sum_probs=122.9
Q ss_pred HHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhcccccccccc--CCchHHHH--HHHHHHHHHHHHhch
Q 014301 12 FSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLL--GPRVASAT--LSLITAPIVLSASLV 87 (427)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~~~~--~~~~~~~~~~~~~~~ 87 (427)
++...........+|.+.+++|.++.+.+++.+...++..+++++.|+++||. ++|+.... +....+++.++....
T Consensus 251 ~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 330 (455)
T TIGR00892 251 VIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA 330 (455)
T ss_pred HHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444566777788999999999999999999999999999999984 34443333 333345555566778
Q ss_pred hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHH
Q 014301 88 SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLA 166 (427)
Q Consensus 88 ~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~ 166 (427)
++++.+++.+++.|++.+.. +...+.+.|.+|++++++.+++.+...++|..+||.+++.+.+. ..+|+..
T Consensus 331 ~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~--------~g~~~~~ 402 (455)
T TIGR00892 331 GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA--------TKNYKYI 402 (455)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh--------cCCcchH
Confidence 89999999999999998876 77778889999999999999999999999888888777766541 2269999
Q ss_pred HHHHHHHHHHHHH
Q 014301 167 FIVPSTFQALTAI 179 (427)
Q Consensus 167 f~~~~~~~~~~~~ 179 (427)
|++.++..++..+
T Consensus 403 f~~~~~~~li~~~ 415 (455)
T TIGR00892 403 FYASGSIVVSAGL 415 (455)
T ss_pred HHHhhHHHHHHHH
Confidence 9988877665544
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=123.99 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=122.1
Q ss_pred cchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchh--h-HH-HHHHHH
Q 014301 22 PPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVS--S-PQ-SFILVR 97 (427)
Q Consensus 22 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~-~~-~l~~~r 97 (427)
....|.+.++.|.+..+.++......+...++.++.|+++||+|||+.++.+..+.+++.++.+... + .+ ....+.
T Consensus 291 ~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 370 (479)
T PRK10077 291 LYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 370 (479)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3445888888998888778888888888999999999999999999999999999888877765432 1 11 223344
Q ss_pred HHHhhcccc-c-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHH--HHHhhccCCcccchhHHHHHHHHH
Q 014301 98 FLVGFCLAN-F-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIF--TAITSLNVGTHTAWRLAFIVPSTF 173 (427)
Q Consensus 98 ~l~G~~~~~-~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--~~l~~~~~~~~~~wr~~f~~~~~~ 173 (427)
++.+.+.+. . +....+++|.+|+++|++++++......+|..+++.+.|.+. +++.+ +.+|++.|++.++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~-----~~~~~~~~~~~~~~ 445 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVA-----HFHNGFSYWIYGCM 445 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhh-----hccCccHHHHHHHH
Confidence 444554443 3 566788899999999999999999999999998887777665 23322 56899999998888
Q ss_pred HHHHHHHHHHHcCC
Q 014301 174 QALTAIMVLIYGQD 187 (427)
Q Consensus 174 ~~~~~~~~~~~~~~ 187 (427)
+++..+..+++.+|
T Consensus 446 ~~~~~~~~~~~~~e 459 (479)
T PRK10077 446 GVLAALFMWKFVPE 459 (479)
T ss_pred HHHHHHHHHhcccc
Confidence 77777666655443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-12 Score=120.42 Aligned_cols=168 Identities=12% Similarity=0.093 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHH
Q 014301 224 LGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAG 303 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 303 (427)
+.+..++...........+|.|..+ .+.++.+.++..+...++..++.++.|+++||+|||+ .+..+..+..
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-------~~~~~~~~~~ 75 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKK-------VMIGADLIRA 75 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhH-------HHHHHHHHHH
Confidence 4455555556666666777888766 5899999999999999999999999999999999997 4444444444
Q ss_pred HHHHHHhhcc-----chHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccc
Q 014301 304 LLCVLLGRVN-----SLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKF 376 (427)
Q Consensus 304 ~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~ 376 (427)
+........+ +.+...+..++.|++.+...+...++..|. ++++|++++|..+....+|..++|.+. ...+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 155 (365)
T TIGR00900 76 VLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL 155 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4333333333 777788888889999998888888888865 778899999999999999999999988 666677
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh
Q 014301 377 SKQTSISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~ 399 (427)
+|+..+...++..+++.+.....
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 156 GIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888877776665555444433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=120.36 Aligned_cols=157 Identities=13% Similarity=0.027 Sum_probs=125.1
Q ss_pred HHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 014301 234 VELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN 313 (427)
Q Consensus 234 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (427)
........+|.+ .+++|.++.+.++..+...++..++.++.|++.||+|||+ ....+..+..+........+
T Consensus 20 ~~~~~~~~~p~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~-------~~~~~~~~~~~~~~~~~~~~ 91 (385)
T TIGR00710 20 GIDMYLPAFPEI-AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP-------VLLLGLFIFALSSLGLALSN 91 (385)
T ss_pred HHHHhcccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-------HHHHHHHHHHHHHHHHHHHc
Confidence 334444445544 4567999999999999999999999999999999999987 55556666666666666677
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHH
Q 014301 314 SLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIV 391 (427)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 391 (427)
+.+...+..++.|++.+...+...++..|. |+++|+++.|..+....+|..++|.+. ...+..+|+..+...++..++
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 171 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGIL 171 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 888888888889999888888888888864 778899999999999999999999888 666677899888877776666
Q ss_pred HHHHHHh
Q 014301 392 CTLPVSL 398 (427)
Q Consensus 392 ~~~~~~~ 398 (427)
..+....
T Consensus 172 ~~~~~~~ 178 (385)
T TIGR00710 172 LSALIFF 178 (385)
T ss_pred HHHHHHH
Confidence 5555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.3e-12 Score=117.81 Aligned_cols=163 Identities=14% Similarity=0.089 Sum_probs=121.9
Q ss_pred HHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHH-HHHHHHHHHHHHHhc----
Q 014301 12 FSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASA-TLSLITAPIVLSASL---- 86 (427)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~---- 86 (427)
+......+......|.+.+++|.++.+.+++.+...++..++.+..|+++||+|||+.+. .+.+..+++.+....
T Consensus 232 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 311 (402)
T TIGR00897 232 IINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH 311 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344444556678888889999999999999999999999999999999999998764 333333333333221
Q ss_pred -hhhHHHHHHHHHHHhhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhH
Q 014301 87 -VSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRL 165 (427)
Q Consensus 87 -~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~ 165 (427)
.++.+..++..++.|++.+...+....+.|.. +++|+++.|+.+...++|..++|.+++.+.+ ..||+.
T Consensus 312 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~---------~~g~~~ 381 (402)
T TIGR00897 312 FGHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG---------FFGAIG 381 (402)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hcchHH
Confidence 34677777888889988876644455667764 5689999999988888888877777766665 679999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014301 166 AFIVPSTFQALTAIMVLIY 184 (427)
Q Consensus 166 ~f~~~~~~~~~~~~~~~~~ 184 (427)
.+++.++..++..++.+++
T Consensus 382 ~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 382 VVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999998887777766665
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-12 Score=116.51 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHH
Q 014301 220 RGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQ 299 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 299 (427)
.++..++..+...........+.|.++++++|+|+.+.++..+...++..++.++.|++.||+|||+ .+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~ 74 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY-------TTTLSL 74 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH-------HHHHHH
Confidence 4566677777777777778888888788889999999999999999999999999999999999997 555666
Q ss_pred HHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhc---
Q 014301 300 TAAGLLCVLLGRVN-SLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSG--- 373 (427)
Q Consensus 300 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~--- 373 (427)
.+..+........+ +.+...+..++.|++.+. .+....+..+ .++++|+++.++.....++|..+++.+. ...
T Consensus 75 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~ 153 (366)
T TIGR00886 75 LLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL 153 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 66666666666666 777777777788877543 4445556664 4788899999998877777776666555 111
Q ss_pred -------ccccchhHH-HHHHHHHHHHH
Q 014301 374 -------SKFSKQTSI-SVMGLMMIVCT 393 (427)
Q Consensus 374 -------~~~~~~~~~-~~~~~~~~~~~ 393 (427)
+..+|++.+ ...+++..+..
T Consensus 154 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 181 (366)
T TIGR00886 154 IFGAGLPAHLAWGWAFVIVPAGILLLPA 181 (366)
T ss_pred HhcccccccccccchhHHHHHHHHHHHH
Confidence 134677777 33344433333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.6e-12 Score=120.98 Aligned_cols=157 Identities=11% Similarity=0.074 Sum_probs=119.1
Q ss_pred ccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc-----hh------h
Q 014301 21 IPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL-----VS------S 89 (427)
Q Consensus 21 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~------~ 89 (427)
.....|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+.+++.++.++ .+ +
T Consensus 303 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (481)
T TIGR00879 303 IMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG 382 (481)
T ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence 455667888889999988899999999999999999999999999999999998887777766652 11 2
Q ss_pred HHHHHHHHHHHh-hccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHH
Q 014301 90 PQSFILVRFLVG-FCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFI 168 (427)
Q Consensus 90 ~~~l~~~r~l~G-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~ 168 (427)
...+....+..+ .+.+..+....++.|.+|+++|++++++.+...++|..+++.+.+.+.+ +.+|++.|+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~---------~~~~~~~f~ 453 (481)
T TIGR00879 383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE---------SIGVGGVFI 453 (481)
T ss_pred HHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCccceeh
Confidence 222333332222 2223335566677999999999999999999888888877777666654 568999999
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 014301 169 VPSTFQALTAIMVLIYGQ 186 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~ 186 (427)
+.++++++..+..+++.+
T Consensus 454 ~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 454 FFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred hHHHHHHHHHHHHheecc
Confidence 988888777776655543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-12 Score=120.07 Aligned_cols=176 Identities=12% Similarity=0.063 Sum_probs=129.9
Q ss_pred hcCc-hHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhh-hccccccchhHH
Q 014301 216 LKNY-RGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDR-MGRRFGIRGRLW 293 (427)
Q Consensus 216 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~ 293 (427)
+|+| .++......++..+.++....+++.|+++++|++..+++..............+++|+++|| +|||+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~------- 89 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR------- 89 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-------
Confidence 3555 47777778788888889999999999999999999988887776655555555789999999 59987
Q ss_pred HHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhhhhhhhhhccccc-CcC--cceeeeehhcchhhhhhHHHHHH
Q 014301 294 GLWAVQTAAGLLCVLLGRVN-SLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKR--SLGVISGMTGSGGTVGAVVTQML 369 (427)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~--~~g~~~g~~~~~~~~g~~~~~~~ 369 (427)
....+..+..++.......+ +.+...+...+.+++.+...+...++..+. |++ +++.+.++.+...++|..++|.+
T Consensus 90 ~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i 169 (500)
T PRK09584 90 VIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA 169 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence 55555555555555555543 344455666778888887777777777754 433 34567888899999999999999
Q ss_pred H-hhcccccchhHHHHHHHHHHHHHHHHHh
Q 014301 370 L-FSGSKFSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 370 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
. ...+..+|+..|...++..+++.+....
T Consensus 170 ~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~ 199 (500)
T PRK09584 170 TPWLAAKYGWSVAFALSVVGMLITVVNFAF 199 (500)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 7777789999998877666665554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.9e-12 Score=113.61 Aligned_cols=173 Identities=15% Similarity=0.132 Sum_probs=153.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHH
Q 014301 220 RGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQ 299 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 299 (427)
..+.+.+..+.....++.....+|+..+| +|.|...+|...+.+..+..++.++...+.||+.||+ .+...+
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~-------lLl~~l 85 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRR-------LLLGLL 85 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH-------HHHHHH
Confidence 45667777778888888888889988765 6999999999999999999999999999999999998 677777
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhccccc
Q 014301 300 TAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFS 377 (427)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~ 377 (427)
.+..+........+|++...+.=++.++..+..++...+...+ +||++|+++.++......++..+|.++. +..+..|
T Consensus 86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G 165 (394)
T COG2814 86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 7777788888888999999999999999999999999999986 4999999999999999999999999999 9999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhc
Q 014301 378 KQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
|+..|...+.+.+++.+..+...
T Consensus 166 WR~~F~~ia~l~ll~~~~~~~~l 188 (394)
T COG2814 166 WRATFLAIAVLALLALLLLWKLL 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999988888777655443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.1e-12 Score=120.29 Aligned_cols=147 Identities=19% Similarity=0.208 Sum_probs=107.0
Q ss_pred hhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 014301 245 YFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCV 324 (427)
Q Consensus 245 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (427)
.+.+++|++..+.+...+...++..++.++.|+++||+|||+ .+..+.++..+........++.+..++..++
T Consensus 61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~-------~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l 133 (476)
T PLN00028 61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRY-------GSAFLLMLTAPAVFCMSLVSSATGFIAVRFF 133 (476)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456678999999999988888899999999999999999997 4455555555666666666777777666777
Q ss_pred HHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hh----c-----ccccchhHHHHHHHHHHHHH
Q 014301 325 FSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FS----G-----SKFSKQTSISVMGLMMIVCT 393 (427)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~----~-----~~~~~~~~~~~~~~~~~~~~ 393 (427)
.|++.+...+ ......+ .|+++||++.|+.+...++|..+++.+. .. . +..+|+..|.+.+++.++..
T Consensus 134 ~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~ 212 (476)
T PLN00028 134 IGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMG 212 (476)
T ss_pred HHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Confidence 7877765433 3334454 5788999999999887777777766554 11 1 12479999998888777666
Q ss_pred HHHHhh
Q 014301 394 LPVSLI 399 (427)
Q Consensus 394 ~~~~~~ 399 (427)
+.....
T Consensus 213 l~~~~~ 218 (476)
T PLN00028 213 ILVLTL 218 (476)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-12 Score=119.17 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=132.8
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhh-hccccccchhHHHHHH
Q 014301 219 YRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDR-MGRRFGIRGRLWGLWA 297 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~ 297 (427)
|.++..+...+.-.+.+++...+++.|+++.+|++..++++....+.....+..+++|+++|| +|||+ ....
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~-------~~~~ 86 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR-------TIVL 86 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHH-------HHHH
Confidence 455666677777788899999999999999999999999988888887777778899999999 99998 5666
Q ss_pred HHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcC--cceeeeehhcchhhhhhHHHHHHH-hh
Q 014301 298 VQTAAGLLCVLLGRVNS-LWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKR--SLGVISGMTGSGGTVGAVVTQMLL-FS 372 (427)
Q Consensus 298 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~--~~g~~~g~~~~~~~~g~~~~~~~~-~~ 372 (427)
+..+..++........+ ....++...+.+++.+...+...++..+ .|++ +|+.+++......++|..++|.+. ..
T Consensus 87 g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l 166 (489)
T PRK10207 87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555443 2334466777888888888888888886 4555 457789999999999999999988 77
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHh
Q 014301 373 GSKFSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
.+..+|++.|.+.++..+++.+....
T Consensus 167 ~~~~gw~~~F~i~~i~~~~~~~~~~~ 192 (489)
T PRK10207 167 ADKFGYSVTYNLCGAGLIIALLVYFA 192 (489)
T ss_pred HHhhChHHHHHHHHHHHHHHHHHHHH
Confidence 77789999998866555444444333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=120.37 Aligned_cols=146 Identities=17% Similarity=0.122 Sum_probs=110.6
Q ss_pred cchhhhhh-hhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch--hhHHHHHHHHH
Q 014301 22 PPLIPIIR-HDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV--SSPQSFILVRF 98 (427)
Q Consensus 22 ~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~ 98 (427)
...+|.+. +++|.++.+.+++.+...++..++.++.|+++||+|||+++..+..+..+..+..... ++.+.+.+..+
T Consensus 295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (496)
T PRK03893 295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF 374 (496)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 35567766 5899999999999999999999999999999999999999988877766655443332 34444445555
Q ss_pred HHhhcc-ccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHH
Q 014301 99 LVGFCL-ANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQAL 176 (427)
Q Consensus 99 l~G~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~ 176 (427)
+.+... +.......++.|.+|+++|++.+++.+....+|..+|+.+++.+.+ +.||+..+...+....+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~---------~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ---------RLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc---------cCChHHHHHHHHHHHHH
Confidence 544433 3335666788999999999999999988888888777777766665 67898887665544433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=115.39 Aligned_cols=168 Identities=13% Similarity=0.069 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHH
Q 014301 221 GWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300 (427)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 300 (427)
++...+..++...........+|.+. +++|+|+.+.+...+...++..++.++.|++.||+|||+ .+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~-------~~~~~~~ 80 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIA-EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKR-------QLIFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHH
Confidence 44444555554444555555666655 567999999999999999999999999999999999997 4555555
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH--hhccccc
Q 014301 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL--FSGSKFS 377 (427)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~~~~~~ 377 (427)
+..+........++.+...+..++.|++.+...+.......+. |+++|+.+.+..+....+|+.++|.+. ...+..+
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g 160 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE 160 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5556656666667777777788888988887777777777754 677899999888888888888998877 3445678
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 014301 378 KQTSISVMGLMMIVCTLPV 396 (427)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~ 396 (427)
|+..|...++..++..+..
T Consensus 161 w~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 161 WYWVYACIGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999988777665554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=115.54 Aligned_cols=174 Identities=16% Similarity=0.144 Sum_probs=119.5
Q ss_pred CchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHH
Q 014301 218 NYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWA 297 (427)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 297 (427)
||.+|.+....++.+........++|.|+.+++|.++.+.+...+...+...+++++.|+++||+|||+ .+.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~----~~~~~~~ 76 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKK----HLLWIIS 76 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH----HHHHHHH
Confidence 578899988898988888899999999999989999999999999999999999999999999999997 1111111
Q ss_pred HHHHHHHHHHHHhhcc-----chHHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-h
Q 014301 298 VQTAAGLLCVLLGRVN-----SLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-F 371 (427)
Q Consensus 298 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~ 371 (427)
...+...........+ ......+..++.+++.+...+....+..+.. ++++...|.....+.+|..++|.+. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~g~ 155 (396)
T TIGR00882 77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS-RNSNFEYGKARMFGCVGWALCASIAGI 155 (396)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh-hhcccccchhhhhcccHHHHHHHHHhh
Confidence 1111111111111111 1112233344556666555555555554432 3345677888888899999999888 4
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHH
Q 014301 372 SGSKFSKQTSISVMGLMMIVCTLPVS 397 (427)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (427)
.. ..+++..|...+++.++..+..+
T Consensus 156 l~-~~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 156 LF-SIDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred hh-ccCchHHHHHHHHHHHHHHHHHH
Confidence 43 35888888877777666655443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-11 Score=116.56 Aligned_cols=160 Identities=19% Similarity=0.124 Sum_probs=136.2
Q ss_pred Hhhhccccchhhhhh-hhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHH
Q 014301 15 FFSTFSIPPLIPIIR-HDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSF 93 (427)
Q Consensus 15 ~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (427)
.+....+...+|.+. +++|.++...|++.+...+|..++++..+++.+|+++++.+..+.+.++++.+..+++++.+..
T Consensus 231 ~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~ 310 (524)
T PF05977_consen 231 NLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLA 310 (524)
T ss_pred HHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHH
Confidence 333334445678765 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHH
Q 014301 94 ILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPST 172 (427)
Q Consensus 94 ~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~ 172 (427)
++..++.|++.... ....+.+.+..|++.|||+++++++....+..+|.++.+.+.+ ..|-+..+.+.++
T Consensus 311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~---------~~g~~~al~~a~~ 381 (524)
T PF05977_consen 311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD---------HFGVRTALLIAGA 381 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCHHHHHHHHHH
Confidence 99999999998876 7778888999999999999999999998888888888888776 6688888888776
Q ss_pred HHHHHHHHHHH
Q 014301 173 FQALTAIMVLI 183 (427)
Q Consensus 173 ~~~~~~~~~~~ 183 (427)
..++..++.+.
T Consensus 382 ~lll~~~~~~~ 392 (524)
T PF05977_consen 382 ALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHH
Confidence 65555554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-12 Score=119.69 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=121.6
Q ss_pred chhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 014301 244 QYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMC 323 (427)
Q Consensus 244 ~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (427)
+++.+++|.++.+.++..+...++..++.++.|++.||+|||+ ....+..+..+........++.+...+..+
T Consensus 18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (399)
T TIGR00893 18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK-------TLAVFIVIWGVFTGLQAFAGAYVSLYILRV 90 (399)
T ss_pred HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcce-------eeHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 3366778999999999999999999999999999999999997 444555555555556666678888888889
Q ss_pred HHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHHh
Q 014301 324 VFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 324 ~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
+.|++.+...+....+..|. |+++|++++++.+....+|..++|.+. ...+..+|+..+...++..++..+....
T Consensus 91 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 99999988888888888865 778899999999999999999999988 6667778999888877776665555443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=114.59 Aligned_cols=152 Identities=14% Similarity=0.185 Sum_probs=123.4
Q ss_pred HHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 014301 234 VELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN 313 (427)
Q Consensus 234 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (427)
..+.....+|.+. +++|.++.+.+...+...++..+++++.|++.||+|||+ .+..+..+..+........+
T Consensus 35 ~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~-------~~~~~~~~~~~~~~~~~~~~ 106 (394)
T PRK10213 35 VEFLPVSLLTPMA-QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY-------VVILFAVLLTLSCLLVSFAN 106 (394)
T ss_pred HHHHHHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH-------HHHHHHHHHHHHHHHHHHHC
Confidence 3334444566655 557999999999999999999999999999999999997 55666666666666666677
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHH
Q 014301 314 SLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIV 391 (427)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 391 (427)
+.+..++.-++.|++.+...+...++..+ .|+++|+++.+......++|..++|.+. ...+..+|+..|...+++.++
T Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~ 186 (394)
T PRK10213 107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVL 186 (394)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 88888888899999999888888888875 4788899999999999999999999999 777778999999887765554
Q ss_pred HH
Q 014301 392 CT 393 (427)
Q Consensus 392 ~~ 393 (427)
+.
T Consensus 187 ~~ 188 (394)
T PRK10213 187 CI 188 (394)
T ss_pred HH
Confidence 43
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=119.33 Aligned_cols=172 Identities=13% Similarity=0.051 Sum_probs=136.1
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHH
Q 014301 219 YRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAV 298 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 298 (427)
+.+|...+..++..........++|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+ ....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-------~~~~~ 81 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRN-------IFFTA 81 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-------HHHHH
Confidence 356777777777777777788889988865 7999999999999888899999999999999999997 44444
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccc
Q 014301 299 QTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKF 376 (427)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~ 376 (427)
..+..+........++.+..++..++.|++.+...+...+...+ .|+++|+++.|..+....+|..++|.+. ...+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~ 161 (471)
T PRK10504 82 IVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA 161 (471)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Confidence 44444444445556777777888889999998888888777775 5788899999999999999999999988 666778
Q ss_pred cchhHHHHHHHHHHHHHHHHHh
Q 014301 377 SKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
+|++.|.....+..++.+....
T Consensus 162 gw~~~f~~~~~~~~l~~~~~~~ 183 (471)
T PRK10504 162 SWHWIFLINIPVGIIGAIATLM 183 (471)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988877666655554443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-12 Score=115.84 Aligned_cols=192 Identities=7% Similarity=-0.034 Sum_probs=144.4
Q ss_pred hHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccc
Q 014301 208 FVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFG 287 (427)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 287 (427)
.+....+.+.+++...+.+...+..+......+++--++++. +-.+..-|........+.++.-+..+++.+|+|+-+
T Consensus 360 v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~-~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~- 437 (618)
T KOG3762|consen 360 VLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDL-GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN- 437 (618)
T ss_pred HHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc-
Confidence 344444667788877777777676777777777776666665 555555566666667778888888999999999987
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchh-hhhhHH
Q 014301 288 IRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGG-TVGAVV 365 (427)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~-~~g~~~ 365 (427)
++..++.+..+=++.+....|+|..+..=++-|+..+..+....++++. .||+.+.++.|+..... .+|-.+
T Consensus 438 ------v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~ 511 (618)
T KOG3762|consen 438 ------VMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGL 511 (618)
T ss_pred ------eeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcch
Confidence 6677777777777788888999999999999999999999999999995 59999999998876543 366666
Q ss_pred HHHHH-hhcccccchhHHHHHHHHHHHHHHHHHhhccccCCCc
Q 014301 366 TQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGGM 407 (427)
Q Consensus 366 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (427)
|.++. ......+.+..|..+++.+++..+....+.+..+++.
T Consensus 512 GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l~~~~ 554 (618)
T KOG3762|consen 512 GSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLLKRRG 554 (618)
T ss_pred hhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 66665 5557788888898888888877777666655444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=116.00 Aligned_cols=150 Identities=9% Similarity=-0.037 Sum_probs=122.4
Q ss_pred hcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 014301 242 IAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLV 321 (427)
Q Consensus 242 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (427)
....+++++|.+..+.++..+...++..+++++.|++.||+|||+ .+..+..+..+........++.+.+++.
T Consensus 30 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (412)
T TIGR02332 30 AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR-------WIAGIMVLWGIASTATMFATGPESLYLL 102 (412)
T ss_pred HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 334677888999999999999999999999999999999999997 5666666667666777777888888888
Q ss_pred HHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhc------ccccchhHHHHHHHHHHHHH
Q 014301 322 MCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSG------SKFSKQTSISVMGLMMIVCT 393 (427)
Q Consensus 322 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~ 393 (427)
-++.|++.+...+....+..|. |+++|+++.|+.+....+|..++|.+. ... +..+|+..|.+.++..++..
T Consensus 103 r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~ 182 (412)
T TIGR02332 103 RILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILG 182 (412)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999998888887777764 778899999999999999999999887 332 34689999988777766554
Q ss_pred HHHHh
Q 014301 394 LPVSL 398 (427)
Q Consensus 394 ~~~~~ 398 (427)
++..+
T Consensus 183 ~~~~~ 187 (412)
T TIGR02332 183 VMTWF 187 (412)
T ss_pred HHHhh
Confidence 44433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=118.02 Aligned_cols=169 Identities=12% Similarity=-0.020 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHH
Q 014301 223 ILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAA 302 (427)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 302 (427)
...+..+....-.......+|.+. +++|.++.+.++..+.+.++...+.++.|+++||+|||+ .+..+..+.
T Consensus 10 ~~~~~~~~~~ld~tiv~~a~p~i~-~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~-------~l~~~~~~~ 81 (495)
T PRK14995 10 IIVLVYIPVAIDATVLHVAAPTLS-MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKR-------LLMLGGTLF 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHH
Confidence 344445555555555666677775 557999999999999999999999999999999999997 666677777
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccc-cc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccch
Q 014301 303 GLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQ 379 (427)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~ 379 (427)
.+........++.+..+++-.+.|++.+...+....... +. ++++|+++.|+......+|..++|.+. ...+..+|+
T Consensus 82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr 161 (495)
T PRK14995 82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWG 161 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence 777777777888888888888999998888777766554 44 678899999999999999999999999 777888999
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 014301 380 TSISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~ 399 (427)
+.|.+...+.++..++....
T Consensus 162 ~~f~i~~~~~~~~~~l~~~~ 181 (495)
T PRK14995 162 SVFLINVPIVLVVMGLTARY 181 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99988776666655544433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=115.26 Aligned_cols=169 Identities=14% Similarity=0.055 Sum_probs=135.4
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHH
Q 014301 219 YRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAV 298 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 298 (427)
+.++...+..+............+|.+. +++|.+..+.++..+...++..+++++.|++.||+|||+ .+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~ 74 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELA-HDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKH-------ILLFL 74 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHH-HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHH-------HHHHH
Confidence 4556666666666666677777777765 557999999999999999999999999999999999997 56666
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccc
Q 014301 299 QTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKF 376 (427)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~ 376 (427)
..+..+........++.+..++..++.|++.+...+.......+. ++++|+++.+.......++..++|.+. ...+..
T Consensus 75 ~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 154 (382)
T PRK10091 75 VALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF 154 (382)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc
Confidence 666777777777788888888888999998888777766666654 677799999998888889999999887 666677
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 014301 377 SKQTSISVMGLMMIVCTLP 395 (427)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~ 395 (427)
+|+..|...++..++..+.
T Consensus 155 gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 155 SWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 8999998877766555443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-12 Score=116.99 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=119.1
Q ss_pred hhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHH
Q 014301 239 DNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGS 318 (427)
Q Consensus 239 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (427)
....|. +.+++|.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..+........++.+..
T Consensus 37 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (398)
T TIGR00895 37 GFAAPA-ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKR-------VLLWSILLFSVFTLLCALATNVTQL 108 (398)
T ss_pred HhhHHH-HhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHccchHHH
Confidence 334444 44567999999999999999999999999999999999987 5555555555656666666777878
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHH
Q 014301 319 VLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPV 396 (427)
Q Consensus 319 ~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (427)
.+..++.|++.+...+...++..|. |+++|+++.|+.+....+|..++|.+. ...+..+|+..+...++...+..+..
T Consensus 109 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 188 (398)
T TIGR00895 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLL 188 (398)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHH
Confidence 8888889999888888888888864 778899999999999999999999888 66677788888887765554444443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-11 Score=111.96 Aligned_cols=161 Identities=10% Similarity=0.039 Sum_probs=117.9
Q ss_pred hhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchh-hHHHHH
Q 014301 16 FSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVS-SPQSFI 94 (427)
Q Consensus 16 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 94 (427)
..........|.+.+++|.|..+.|...+.+.++..++.+..|++.||+|||+.+..+..+..++..+....+ +...+.
T Consensus 219 ~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 298 (393)
T PRK09705 219 GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW 298 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 3344455566776677899999999999999999999999999999999999999998888777766554333 322222
Q ss_pred HHHHHHhhccccc-cchHHHHHcccC-ccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHH
Q 014301 95 LVRFLVGFCLANF-VANQFWMSSMFS-GCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPST 172 (427)
Q Consensus 95 ~~r~l~G~~~~~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~ 172 (427)
-++.|++.+.. +.......+..+ +++|++..++.+....++..++|.+.+.+.+. ..+|+..|.+.++
T Consensus 299 --~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~--------~g~~~~~~~~~~~ 368 (393)
T PRK09705 299 --AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSI--------SGNYLMDWAFHAL 368 (393)
T ss_pred --HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCchHHHHHHHH
Confidence 34567777765 555556666664 57899999999888888887777777666652 2358888888877
Q ss_pred HHHHHHHHHHHHcC
Q 014301 173 FQALTAIMVLIYGQ 186 (427)
Q Consensus 173 ~~~~~~~~~~~~~~ 186 (427)
.+++..+....+++
T Consensus 369 ~~~~~~~~~~~~~~ 382 (393)
T PRK09705 369 CVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHhcc
Confidence 77766665555543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=116.98 Aligned_cols=162 Identities=18% Similarity=0.110 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHH
Q 014301 223 ILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAA 302 (427)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 302 (427)
...+.+..............|. +++++|.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-------~~~~~~~~~ 87 (405)
T TIGR00891 16 AAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL-------PMVTSIVLF 87 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHH
Confidence 3444444444444444445554 45668999999999999999999999999999999999997 555555566
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccc--cc
Q 014301 303 GLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKF--SK 378 (427)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~--~~ 378 (427)
.+........++.+..++..++.|++.+...+...++..| .|+++|+++.++.+....+|..++|.+. ...+.. +|
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 6666666667788888888899999998888888888775 4788999999999999999999999887 444433 38
Q ss_pred hhHHHHHHHHHHHH
Q 014301 379 QTSISVMGLMMIVC 392 (427)
Q Consensus 379 ~~~~~~~~~~~~~~ 392 (427)
+..+...++..++.
T Consensus 168 ~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 168 RALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHHHHH
Confidence 87776655444443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=115.73 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=108.7
Q ss_pred Hhhhccccchhhhhhh-hcCCCcchhhHHHHHHHHHHHHhhcccccccccc--CCchHH-HHHHHHHHHHHHHHhc--hh
Q 014301 15 FFSTFSIPPLIPIIRH-DLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLL--GPRVAS-ATLSLITAPIVLSASL--VS 88 (427)
Q Consensus 15 ~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~~-~~~~~~~~~~~~~~~~--~~ 88 (427)
....+......|.+.+ +.|.+..+.++..+.+.++..++.++.|+++||+ |||+.. .....+..++.+...+ .+
T Consensus 266 ~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~ 345 (452)
T PRK11273 266 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAG 345 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 3333445566776554 5789999999999999999999999999999999 555432 2222333333332222 23
Q ss_pred hHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHH-HHHHHHHHHHHHhhccCCcccchhHH
Q 014301 89 SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGV-SQLLMPLIFTAITSLNVGTHTAWRLA 166 (427)
Q Consensus 89 ~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-g~~~~~~l~~~l~~~~~~~~~~wr~~ 166 (427)
+.+...+..++.|.+.... ........|.+|+++||+++|+.+...++|..+ ++.+.+.+.+ +.||+..
T Consensus 346 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~---------~~g~~~~ 416 (452)
T PRK11273 346 NPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---------FFGWDGG 416 (452)
T ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH---------HhcchHH
Confidence 4454555555555543322 333445689999999999999998877777543 5666665554 6689999
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 014301 167 FIVPSTFQALTAIMVLIYGQ 186 (427)
Q Consensus 167 f~~~~~~~~~~~~~~~~~~~ 186 (427)
|++.++.+++.++....+.+
T Consensus 417 f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 417 FMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99888877776666555543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=113.64 Aligned_cols=156 Identities=13% Similarity=0.145 Sum_probs=111.4
Q ss_pred HHHhHhhhccccchhhhhh-hhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHH--HHHhc-
Q 014301 11 LFSCFFSTFSIPPLIPIIR-HDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIV--LSASL- 86 (427)
Q Consensus 11 ~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~- 86 (427)
.+.............|.+. +++|.++.+.+...+...++..++.++.|+++||+|||+.+.....+..+.. .....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T TIGR00883 228 VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL 307 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444555666655 7789999999999999999999999999999999999998776555443322 22222
Q ss_pred -hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhh-hhhhhhhHHHHHHHHHHHHHHHhhccCCcccc-
Q 014301 87 -VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVS-AGWANMGAGVSQLLMPLIFTAITSLNVGTHTA- 162 (427)
Q Consensus 87 -~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~- 162 (427)
.++.+.+....++.|++.+.. ++..+.+.|.+|+++|+++.++. +....+|..++|.+++.+.+ +.+
T Consensus 308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~---------~~g~ 378 (394)
T TIGR00883 308 DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA---------MTGD 378 (394)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH---------HcCc
Confidence 256777778888899888765 77888999999999999999974 33344555555555555544 455
Q ss_pred hhHHHHHHHHHHH
Q 014301 163 WRLAFIVPSTFQA 175 (427)
Q Consensus 163 wr~~f~~~~~~~~ 175 (427)
|+..++......+
T Consensus 379 ~~~~~~~~~~~~l 391 (394)
T TIGR00883 379 WYAIGYYLAALAL 391 (394)
T ss_pred chhHHHHHHHHHH
Confidence 8887776655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=112.45 Aligned_cols=145 Identities=17% Similarity=0.138 Sum_probs=106.6
Q ss_pred CchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHH
Q 014301 218 NYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWA 297 (427)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 297 (427)
+|.++...+.....+...+......+.+-++++|+|+.+.+++.+...+...+.++..|++.||+|.|+ ....
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~-------v~~~ 105 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRR-------WTVF 105 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-------HHHH
Confidence 356666666665555555555555555555578999999999999999999999999999999999997 4455
Q ss_pred HHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 298 VQTAAGLLCVLLGRV-----NSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 298 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+..+..+......+. ++.+..++..++.|++ +..++.....+++ .|+++||++.|+....+++|..+++.+.
T Consensus 106 ~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 106 STAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555555543 6778888888888887 6677777777774 5888899999999766667766555444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=111.58 Aligned_cols=155 Identities=11% Similarity=0.114 Sum_probs=114.0
Q ss_pred hhhhhhhhcCCCcchhhHHHH-HHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHH---Hhch-hhHHHHHHHHH
Q 014301 24 LIPIIRHDLNLTDTDVGTAGM-ASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLS---ASLV-SSPQSFILVRF 98 (427)
Q Consensus 24 ~~~~i~~~~~~s~~~~g~~~s-~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~-~~~~~l~~~r~ 98 (427)
..|.+.+++|.|+.+.++... ...++..++.+++|+++||+|+|+.+..+..+.+++.+. .+.. ++.+.+...-+
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~ 324 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF 324 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 345556779999999999974 667899999999999999999999887766654444332 2333 45555555666
Q ss_pred HHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHH
Q 014301 99 LVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALT 177 (427)
Q Consensus 99 l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~ 177 (427)
+..+..+.. ....++..+..+++.+++..++.+...++|..+++.+.+.+.+ ..||+..|.+.++.+++.
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~---------~~G~~~~f~~~~~~~l~~ 395 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE---------AHGWPTFYLFSVAAAVPG 395 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhChHHHHHHHHHHHHHH
Confidence 656555543 5566777899999889999999888888877655555555544 569999999998888887
Q ss_pred HHHHHHHcCC
Q 014301 178 AIMVLIYGQD 187 (427)
Q Consensus 178 ~~~~~~~~~~ 187 (427)
.+.....+++
T Consensus 396 l~~~~~~~~~ 405 (491)
T PRK11010 396 LLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHhc
Confidence 7777666544
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-11 Score=112.98 Aligned_cols=161 Identities=16% Similarity=0.070 Sum_probs=120.4
Q ss_pred HHHHHHhhhhhhhcch--hhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHH
Q 014301 230 FCFGVELTTDNIIAQY--FYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCV 307 (427)
Q Consensus 230 ~~~~~~~~~~~~~~~~--l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (427)
.....+.....+.|.+ +.+++|.++.+.++..+...++..++.++.|+++||+|||+ .+..+..+..+...
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~ 86 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKP-------VLLAGLSLFALGSL 86 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcH-------HHHHHHHHHHHHHH
Confidence 3344444445555554 55677999999999999999999999999999999999997 45555555555555
Q ss_pred HHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHH
Q 014301 308 LLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVM 385 (427)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~ 385 (427)
.....++.+...+..++.|++.+...+...+...+ .++++++...+..+....++..++|.+. ...+..+|+..+...
T Consensus 87 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 87 GMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred HHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 66666777777777778888777666666666664 5677778888888888888999999888 666778899888877
Q ss_pred HHHHHHHHHHHH
Q 014301 386 GLMMIVCTLPVS 397 (427)
Q Consensus 386 ~~~~~~~~~~~~ 397 (427)
+++.++..+...
T Consensus 167 ~~~~~~~~~~~~ 178 (401)
T PRK11043 167 FAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHH
Confidence 776666555443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=112.88 Aligned_cols=163 Identities=11% Similarity=-0.045 Sum_probs=124.1
Q ss_pred HHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHH
Q 014301 228 YGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCV 307 (427)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (427)
..............+|.+. +++|.++.+.++..+...++..++.++.|+++||+|||+ .+..+.....+...
T Consensus 12 ~~~~~~~~~~~~~~lp~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-------~l~~~~~~~~i~~~ 83 (392)
T PRK10473 12 VLLYPAGIDMYLVGLPRIA-ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP-------VAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH-------HHHHHHHHHHHHHH
Confidence 3333344444445666655 446999999999999999999999999999999999987 55555555566666
Q ss_pred HHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHH
Q 014301 308 LLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVM 385 (427)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~ 385 (427)
.....++.+...+..++.|++.+...+...++..+ .++++|+++.+..+....++..++|.+. ...+..+|+..+...
T Consensus 84 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 84 LCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred HHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 66666777777777778888888777777777775 5788999999999999999999999888 555677888888887
Q ss_pred HHHHHHHHHHHHh
Q 014301 386 GLMMIVCTLPVSL 398 (427)
Q Consensus 386 ~~~~~~~~~~~~~ 398 (427)
+++.++..+....
T Consensus 164 ~~~~~i~~~~~~~ 176 (392)
T PRK10473 164 AAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHH
Confidence 7766666555433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=96.44 Aligned_cols=368 Identities=13% Similarity=0.122 Sum_probs=201.7
Q ss_pred HHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhh
Q 014301 10 SLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSS 89 (427)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 89 (427)
++++...+...-+|..-.+-++++....|+|.+.-...-..++...+.|.++|+-|||+.-+.-++...++++ +-.+++
T Consensus 45 VyslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpq 123 (454)
T KOG4332|consen 45 VYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQ 123 (454)
T ss_pred HHHHHHhhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCc
Confidence 3344444445567777777888999999999988888778888888899999999999986655555554443 356789
Q ss_pred HHHHHHHHHHHhhccccc-cchHHHH-HcccCccccccchhhhhh----hhhhhHHHHHHHHHHHHHHHhhccCCcccch
Q 014301 90 PQSFILVRFLVGFCLANF-VANQFWM-SSMFSGCVVGLANGVSAG----WANMGAGVSQLLMPLIFTAITSLNVGTHTAW 163 (427)
Q Consensus 90 ~~~l~~~r~l~G~~~~~~-~~~~~~i-~~~~~~~~r~~~~~~~~~----~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~w 163 (427)
|-.++++|.+-|+..+.. .+.-++. +|.- ++|+.-.-+... ...+|..+-.++++..++.+.+.- ..|-
T Consensus 124 YkVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~---slGP 198 (454)
T KOG4332|consen 124 YKVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF---SLGP 198 (454)
T ss_pred eEEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh---ccCC
Confidence 999999999999999865 6666655 6654 334432222211 112333333444555555444310 1233
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhh-h
Q 014301 164 RLAFIVPSTFQALT-AIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN-I 241 (427)
Q Consensus 164 r~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 241 (427)
-.+|-..+.+..+. ++..--..|+..++.+ + ++-..+.+...+.+..|+++.++--...+.-...+.+.. |
T Consensus 199 VAPFdAAacfLaigmAvil~~W~ENygdps~----~---kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLW 271 (454)
T KOG4332|consen 199 VAPFDAAACFLAIGMAVILSSWSENYGDPSE----N---KDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLW 271 (454)
T ss_pred CCchHHHHHHHHHHHHHHHhhhhhccCChhh----h---HHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeee
Confidence 34444333222221 1111112222111110 0 000023344445566777777666655555555555444 4
Q ss_pred hcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc-----cchH
Q 014301 242 IAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV-----NSLW 316 (427)
Q Consensus 242 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 316 (427)
.|..--++.+.+ -|.+++.+.++..+|+-+..++..|-..|.. ..+ .+........+.+..+... .++.
T Consensus 272 TPaLspn~e~iP---hGfiFatFMlASmLGSSla~Rl~s~s~~~ve--~ym-qivf~vs~a~l~Lpilt~~vsP~kes~~ 345 (454)
T KOG4332|consen 272 TPALSPNDEEIP---HGFIFATFMLASMLGSSLASRLLSRSSPKVE--SYM-QIVFLVSIAALLLPILTSSVSPSKESPS 345 (454)
T ss_pred cccCCCCcccCC---chhHHHHHHHHHHHhhHHHHHHHhcCCcccc--hHH-HHHHHHHHHHHHHHHHHhccCCCcCCch
Confidence 443332232333 3566666777777777666665554433321 111 1111111122222222221 2344
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHH
Q 014301 317 GSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTL 394 (427)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 394 (427)
...++.+++-...|..+|..+-+-. .+|.+.|++.+-.+..--++-.-++-+.. ..+...+.+..|-++.+...++.+
T Consensus 346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence 5677788888899999999988877 56888888766555443333332222211 222234455777777776666655
Q ss_pred HH
Q 014301 395 PV 396 (427)
Q Consensus 395 ~~ 396 (427)
..
T Consensus 426 ~~ 427 (454)
T KOG4332|consen 426 LQ 427 (454)
T ss_pred HH
Confidence 43
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=117.38 Aligned_cols=168 Identities=16% Similarity=0.085 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHH
Q 014301 224 LGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAG 303 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 303 (427)
..+..+.............|.+. +++|.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~ 78 (485)
T TIGR00711 7 LMLGTFMAVLDSTIVNVAIPTIA-GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR-------LFLISTFAFT 78 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHH-------HHHHHHHHHH
Confidence 33444444444455555566655 557999999999999999999999999999999999997 5566666666
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhH
Q 014301 304 LLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTS 381 (427)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 381 (427)
+........++.+..++..++.|++.+...+...++..+. |+++|+++.++......+|..++|.+. ...+..+|++.
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~ 158 (485)
T TIGR00711 79 LGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWI 158 (485)
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceeh
Confidence 6666777778888888888999999988888888888854 788999999999999999999999988 77778899999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 014301 382 ISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~ 399 (427)
|...+...++..+.....
T Consensus 159 f~~~~~~~~~~~~~~~~~ 176 (485)
T TIGR00711 159 FLINVPIGIIVVVVAFFI 176 (485)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 888776666555544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-11 Score=113.98 Aligned_cols=155 Identities=14% Similarity=0.032 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHH
Q 014301 224 LGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAG 303 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 303 (427)
..+................ +.+++++|.|+.+.++..+...++..++.++.|+++||+|||+ .+..+.....
T Consensus 23 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~-------~l~~~~~~~~ 94 (426)
T PRK12307 23 AWLGYVFDGFDFMLIFYIM-YLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP-------LMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHhHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-------HHHHHHHHHH
Confidence 3333333333333333333 3455678999999999999999999999999999999999997 5666666666
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhH
Q 014301 304 LLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTS 381 (427)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 381 (427)
+........++.+...+.-++.|++.+...+....+..|. |+|+|+++.++......+|..++|.+. ...+..+|+..
T Consensus 95 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~ 174 (426)
T PRK12307 95 VGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAA 174 (426)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHH
Confidence 6666666777888888888899999888888888877754 778899999999999999999999887 66677889988
Q ss_pred HHHHH
Q 014301 382 ISVMG 386 (427)
Q Consensus 382 ~~~~~ 386 (427)
+.+..
T Consensus 175 f~i~~ 179 (426)
T PRK12307 175 FFVGL 179 (426)
T ss_pred HHHHH
Confidence 87643
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-10 Score=105.08 Aligned_cols=321 Identities=12% Similarity=0.060 Sum_probs=191.2
Q ss_pred HHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCcc
Q 014301 43 GMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGC 121 (427)
Q Consensus 43 ~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~ 121 (427)
.++-...+.+..++.+.+.|+.|.|..++++........+..-+- |-+-++.+-.+.|+|.+.. ..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 677778888999999999999999999999999988888776654 5667788899999999987 66667889999999
Q ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHH----------HHHHHHHHHHHHHHHHHHcCCCCCC
Q 014301 122 VVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLA----------FIVPSTFQALTAIMVLIYGQDLPSG 191 (427)
Q Consensus 122 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~----------f~~~~~~~~~~~~~~~~~~~~~~~~ 191 (427)
++.+..++.-+....+..+|......+...-...+..+...-|.. ..+.+++..+..+...-.. ..|.+
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~-~~p~~ 213 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFD-FLPSK 213 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhee-ecCcc
Confidence 999999998888888887776544333221111111111111111 1111111111111111010 11211
Q ss_pred CcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhc--cCCcH-HHHHHHHHHHHHhh
Q 014301 192 NYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDR--FGVNL-QVAGTIAASFGMAN 268 (427)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g~s~-~~~~~~~~~~~~~~ 268 (427)
+.....+..+... .+..+...+.+++|+.+.+....+........+....|..+.-. .+.+. ...+......+++.
T Consensus 214 ~~~~~~~~~~~~~-~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~ 292 (461)
T KOG3098|consen 214 DVVNCKSSSETSF-SELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGE 292 (461)
T ss_pred chhhhhhhccccH-HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHH
Confidence 1111000000111 22233445667788888777777666666666666666665322 23222 33444555567777
Q ss_pred hcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHH--hhc----------------cchHHHHHHHHHHHHHhh
Q 014301 269 LFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLL--GRV----------------NSLWGSVLVMCVFSVFVQ 330 (427)
Q Consensus 269 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------~~~~~~~~~~~~~g~~~~ 330 (427)
+.+....+.+.+|.++.. +...+..+..+..+...+. ... ++.....+..++.|++-.
T Consensus 293 v~~g~~~~~l~~rir~fg----~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~ 368 (461)
T KOG3098|consen 293 VIGGLDFSILSKRIRGFG----RKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA 368 (461)
T ss_pred HHHHHHHHHHhhhhhhcc----cCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH
Confidence 777777777777664432 1112222222222222221 111 123466677788888888
Q ss_pred hhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 331 AAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
......+..+....+++|..+.++..+-..+++.++-...
T Consensus 369 ~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 369 CFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 8888888888876688888888888777777776654433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=109.08 Aligned_cols=149 Identities=8% Similarity=-0.017 Sum_probs=116.1
Q ss_pred hccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 014301 18 TFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVR 97 (427)
Q Consensus 18 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 97 (427)
........|.+.+|.|.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+....+++.++.+.+++.+.+++..
T Consensus 221 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T PRK11128 221 HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQ 300 (382)
T ss_pred hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33344455666678999999999999999999999999999999999999999999999998888888899999999999
Q ss_pred HHHhhccccc-cchHHHHHcccCccccccchhhhh-hhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHH
Q 014301 98 FLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSA-GWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQA 175 (427)
Q Consensus 98 ~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~ 175 (427)
++.|++.+.. +....++.+. +++++++..+..+ .....|..+|+.+++.+.+ ..++ ..|+..++..+
T Consensus 301 ~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~---------~~g~-~~~~~~~~~~~ 369 (382)
T PRK11128 301 ILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ---------HLGA-GVFWVMALVAL 369 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hccH-HHHHHHHHHHH
Confidence 9999998876 7777777776 5666788888765 3344555666666665554 5576 46666665555
Q ss_pred HH
Q 014301 176 LT 177 (427)
Q Consensus 176 ~~ 177 (427)
+.
T Consensus 370 ~~ 371 (382)
T PRK11128 370 PA 371 (382)
T ss_pred HH
Confidence 43
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=114.66 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=122.2
Q ss_pred hhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHH
Q 014301 238 TDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWG 317 (427)
Q Consensus 238 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (427)
....+|.+.++ +|.|+.+.+...+...++..++.++.|++.||+|||+ .+..+..+..+........++.+.
T Consensus 10 ~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~i~~~~~~~~~~~~~ 81 (377)
T PRK11102 10 YLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP-------VILGGTLVFALAAVACALAQTIDQ 81 (377)
T ss_pred HhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH-------HHHHHHHHHHHHHHHHHHHccHHH
Confidence 44556666654 6999999999999999999999999999999999987 555666666666666666677777
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHH
Q 014301 318 SVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLP 395 (427)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (427)
..+..++.|++.+...+...++..+. ++++|+++.++.+....+|..++|.+. ...+..+|+..+...+.+.++..+.
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 88888888988888888887877754 778899999999999999999999888 6666678888888777766665554
Q ss_pred HH
Q 014301 396 VS 397 (427)
Q Consensus 396 ~~ 397 (427)
..
T Consensus 162 ~~ 163 (377)
T PRK11102 162 VF 163 (377)
T ss_pred HH
Confidence 43
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-11 Score=109.87 Aligned_cols=155 Identities=10% Similarity=-0.036 Sum_probs=112.8
Q ss_pred hhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccch
Q 014301 236 LTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSL 315 (427)
Q Consensus 236 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (427)
..+...+|.+. +++|.|+.+.++..+.+.++..++++..|++.||+|||+ ...................++.
T Consensus 8 ~~~~~~lp~i~-~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~-------~~~~~~~~~~~~~~~~~~~~~~ 79 (368)
T TIGR00903 8 VTFSPVLSLVA-EDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW-------FLFGSLATFAAAAGRLLDPFNY 79 (368)
T ss_pred HHHHhhHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------HHHHHHHHHHHHHHHHHHhccH
Confidence 33444455554 567999999999999999999999999999999999875 2222222222222222222477
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHH
Q 014301 316 WGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTL 394 (427)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 394 (427)
...++.-++.|++.+...+.........|+++|+++.++.+....+|..+++.+. ...+..+|+..|...+++.++..+
T Consensus 80 ~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 80 EWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII 159 (368)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 7788888888888875443333333356889999999999999999999999888 666788999999887777666655
Q ss_pred HHHh
Q 014301 395 PVSL 398 (427)
Q Consensus 395 ~~~~ 398 (427)
+...
T Consensus 160 ~~~~ 163 (368)
T TIGR00903 160 LVLA 163 (368)
T ss_pred HHHH
Confidence 5443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=109.82 Aligned_cols=158 Identities=14% Similarity=0.045 Sum_probs=117.5
Q ss_pred HHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 014301 230 FCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLL 309 (427)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (427)
+...........+|.+. +++|.|+.+.++..+...++..++.++.|+++||+|||+ .+..+.....+.....
T Consensus 19 ~~~~~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~-------~~~~~~~~~~~~~~~~ 90 (394)
T PRK11652 19 VGQMAQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP-------VILVGMSIFILGTLVA 90 (394)
T ss_pred HHHHHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-------HHHHHHHHHHHHHHHH
Confidence 33344444444555555 557999999999999999999999999999999999997 4445555555555555
Q ss_pred hhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHH
Q 014301 310 GRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGL 387 (427)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 387 (427)
...++.+...+..++.|++.+...+.......+ .++++++.+.+..+....++..++|.+. ...+..+|+..+...++
T Consensus 91 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~ 170 (394)
T PRK11652 91 LFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLL 170 (394)
T ss_pred HHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 566777777777788888877666665556664 4667788888988888889999999888 66667789988887766
Q ss_pred HHHHHHHH
Q 014301 388 MMIVCTLP 395 (427)
Q Consensus 388 ~~~~~~~~ 395 (427)
..++..+.
T Consensus 171 ~~~~~~~~ 178 (394)
T PRK11652 171 LGAGVTFS 178 (394)
T ss_pred HHHHHHHH
Confidence 65544433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=108.20 Aligned_cols=152 Identities=14% Similarity=0.006 Sum_probs=109.1
Q ss_pred chhhhh-hhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch-----hhHHHHHHH
Q 014301 23 PLIPII-RHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV-----SSPQSFILV 96 (427)
Q Consensus 23 ~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~ 96 (427)
...|.+ .+++|.++.+.++......++..++.++.|+++||+|+|+.+..+..+..++..+.... ++.+.+++.
T Consensus 236 ~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (406)
T PRK15402 236 ALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG 315 (406)
T ss_pred HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 334544 56789999999998888888999999999999999999999999888877777766553 356777888
Q ss_pred HHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHH
Q 014301 97 RFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQA 175 (427)
Q Consensus 97 r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~ 175 (427)
.++.|++.+.. +....... ..++++||++.+..+....+|..+|+.++..+.+ ..++....+..++..+
T Consensus 316 ~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~---------~~~~~~~~~~~~~~~~ 385 (406)
T PRK15402 316 LSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL---------GGGNGLFNLFNLANGL 385 (406)
T ss_pred HHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhccc---------CCchHHHHHHHHHHHH
Confidence 89999998865 44444443 3345889999999988888877766666555543 4455554444444444
Q ss_pred HHHHHHHHH
Q 014301 176 LTAIMVLIY 184 (427)
Q Consensus 176 ~~~~~~~~~ 184 (427)
+........
T Consensus 386 ~~~~~~~~~ 394 (406)
T PRK15402 386 LWLLLVRIF 394 (406)
T ss_pred HHHHHHHHH
Confidence 443333333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=109.38 Aligned_cols=159 Identities=11% Similarity=0.058 Sum_probs=114.8
Q ss_pred CchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHH
Q 014301 218 NYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWA 297 (427)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 297 (427)
+|+++.+.+..++............+... +++|.++.+.++..+.+.+...+..++.|+++||++||+ .+..
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~-------vl~~ 73 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALL-KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGR-------VMFI 73 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCch-------hhHH
Confidence 45677777777776665555555555554 456889999999999999999999999999999999998 4444
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhccc
Q 014301 298 VQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSK 375 (427)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~ 375 (427)
+..+..+.........+. ++..++.|++.+...|...++.+| +|+|+|++++|..+....++..+||.+. ...+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 74 ANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333332 345567899999999999999986 5888999999999999999999999988 44332
Q ss_pred ccchhHHHHHHHH
Q 014301 376 FSKQTSISVMGLM 388 (427)
Q Consensus 376 ~~~~~~~~~~~~~ 388 (427)
.+...+.+.+.+
T Consensus 151 -~~~~~~~i~~~~ 162 (393)
T PRK11195 151 -HAEAALAVCALI 162 (393)
T ss_pred -HHHHHHHHHHHH
Confidence 244444444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=107.48 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=104.8
Q ss_pred cchhh-hhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc---h-hhHHHHHHH
Q 014301 22 PPLIP-IIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL---V-SSPQSFILV 96 (427)
Q Consensus 22 ~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~ 96 (427)
....| .+.+++|.++.+...+.....+...++.++.|+++||+|||+.+..+.++..++...... . ++.+.+++.
T Consensus 270 ~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (438)
T PRK09952 270 TAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFS 349 (438)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33444 445678888877666666667777888899999999999999998887765554433222 2 234455556
Q ss_pred HHHHhhccccc-cchHHHHHcccCccccccchhhhhhh-hhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHH
Q 014301 97 RFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGW-ANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQ 174 (427)
Q Consensus 97 r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~ 174 (427)
.++.+++.+.. +...+++.|.+|++.|+...++.... ..+|..++|.+.+.+.+. ...+|+..+...++..
T Consensus 350 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~-------~~~~~~~~~~~~~~~~ 422 (438)
T PRK09952 350 IMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTY-------FGGSWHSVAIYLLAGC 422 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCchHHHHHHHHHH
Confidence 67777887765 66778889999999998888875432 224554454444444321 0235888888877777
Q ss_pred HHHHHHHHHH
Q 014301 175 ALTAIMVLIY 184 (427)
Q Consensus 175 ~~~~~~~~~~ 184 (427)
++..+..+..
T Consensus 423 ~i~~v~~~~~ 432 (438)
T PRK09952 423 LISAMTALLM 432 (438)
T ss_pred HHHHHHHHHc
Confidence 7766665555
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=108.47 Aligned_cols=142 Identities=7% Similarity=0.023 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHH
Q 014301 221 GWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300 (427)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 300 (427)
++.+.+.++.............|.+ ++++|.++.+.+++.+...++..++++..|++.||+|||+ ....+..
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~-------~~~~g~~ 76 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKA-------GILLGLF 76 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-------HHHHHHH
Confidence 3444444444444443334555544 6778999999999999999999999999999999999997 5555555
Q ss_pred HHHHHHHHHh---hccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 301 AAGLLCVLLG---RVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 301 ~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+..+...... ..++.+...+..++.|++.+...+...++..+. |++++++..++.+....+|..++|.+.
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~ 150 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVA 150 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444432 235677778888899999999988887777644 777789999999999999999999887
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-10 Score=96.31 Aligned_cols=121 Identities=21% Similarity=0.237 Sum_probs=102.3
Q ss_pred hccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch-------hhH
Q 014301 18 TFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV-------SSP 90 (427)
Q Consensus 18 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-------~~~ 90 (427)
.+.++..-|++++.+|.|.+|...+.+...+|..+ +++.|.+.||+|+|.++.+|.+...+|..+...+ +++
T Consensus 18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~ 96 (250)
T PF06813_consen 18 TYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPV 96 (250)
T ss_pred ccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccch
Confidence 56688889999999999999999999999999986 5889999999999999999999998888776553 478
Q ss_pred HHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHH
Q 014301 91 QSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGV 140 (427)
Q Consensus 91 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 140 (427)
|.+.+..++.|.+.+.+ .+......+.+| ++||.+.|+.-....++..+
T Consensus 97 ~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai 146 (250)
T PF06813_consen 97 WLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAI 146 (250)
T ss_pred HHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHH
Confidence 88888888888887765 555566678887 68999999998887776653
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=107.32 Aligned_cols=148 Identities=12% Similarity=0.057 Sum_probs=117.1
Q ss_pred hhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 014301 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVL 320 (427)
Q Consensus 241 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (427)
-+|. +.+++|.+..+.+...+.+.++..+++++.|+++||+|||+ .+..+..+..+........++.+..++
T Consensus 38 ~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~-------~l~~~~~~~~~~~~~~~~a~~~~~l~~ 109 (413)
T PRK15403 38 GIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP-------VLITGALIFTLACAATLFTTSMTQFLI 109 (413)
T ss_pred CHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH-------HHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3443 44667999999999999999999999999999999999997 555566666666666667778888888
Q ss_pred HHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHH
Q 014301 321 VMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPV 396 (427)
Q Consensus 321 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (427)
.-++.|++.+...+.......|. ++++++++++..+....++..++|.+. ...+..+|+..|...++..+++.+..
T Consensus 110 ~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 110 ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 88888888776555555666654 677788999999999999999999888 66667899999988887766665543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-10 Score=105.79 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=129.1
Q ss_pred ccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCc--hHHHHHHHHHHHHHHHHhc--------hhhH
Q 014301 21 IPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPR--VASATLSLITAPIVLSASL--------VSSP 90 (427)
Q Consensus 21 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~ 90 (427)
.......-.+++|.+..+...+.-+..+...+|++++|++.||+|.| +++..++.++.+..+...+ .++-
T Consensus 301 ~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~ 380 (477)
T PF11700_consen 301 ISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSP 380 (477)
T ss_pred HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccH
Confidence 33444455668999999999999999999999999999999999999 8988888887555555444 5788
Q ss_pred HHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHH
Q 014301 91 QSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIV 169 (427)
Q Consensus 91 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~ 169 (427)
+.+.+.-++.|+..|.. ....++.+|..|+++.+..+|++....-....+||++.+.+.+. ..+-|+.+..
T Consensus 381 ~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~--------tg~~r~g~~~ 452 (477)
T PF11700_consen 381 WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA--------TGSQRYGFLF 452 (477)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCchhHHHH
Confidence 88999999999999987 88889999999999999999999988888887777776666653 2357888888
Q ss_pred HHHHHHHHHHHHHHHcC
Q 014301 170 PSTFQALTAIMVLIYGQ 186 (427)
Q Consensus 170 ~~~~~~~~~~~~~~~~~ 186 (427)
..++.++..++.+++..
T Consensus 453 l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 453 LLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 88777777666666533
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-10 Score=107.38 Aligned_cols=142 Identities=11% Similarity=0.081 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHH
Q 014301 221 GWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300 (427)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 300 (427)
+..+.+.++.............|.+ ++++|.|+.+.++..+.+.++..+++++.|++.||+|||+ .+..+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~-------~l~~g~~ 99 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA-------GIITGLF 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-------HHHHHHH
Confidence 3444555555555556566667765 7788999999999999999999999999999999999997 5555555
Q ss_pred HHHHHHHHH---hhccchHHHHHHHHHHHHHhhhhhhhhhhcccccCcCc-ceeeeehhcchhhhhhHHHHHHH
Q 014301 301 AAGLLCVLL---GRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRS-LGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 301 ~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+..+..... ...++.+...+..++.|++.+...+....+..+.++++ +...++..+....+|..++|.+.
T Consensus 100 ~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554432 34668888888889999999999888888877765544 44568888888899999998876
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-10 Score=108.22 Aligned_cols=142 Identities=13% Similarity=0.064 Sum_probs=106.5
Q ss_pred HHHHHhHhhhccccchhhhhhhh-cCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch
Q 014301 9 LSLFSCFFSTFSIPPLIPIIRHD-LNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV 87 (427)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 87 (427)
+..++............+.+.++ ++ ++.+.+++.+...++..++.+++++++||+|+|+.+..+..+.+++.+...+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR00792 229 LAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA 307 (437)
T ss_pred HHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 33343434433333344444433 34 56677888888899999999999999999999999999998888887776665
Q ss_pred -hhHHHHHHHHHHHhhccccc-cchHHHHHcccC-------ccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 014301 88 -SSPQSFILVRFLVGFCLANF-VANQFWMSSMFS-------GCVVGLANGVSAGWANMGAGVSQLLMPLIFTA 151 (427)
Q Consensus 88 -~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 151 (427)
++.+.+++..++.|++.+.. +...++++|..+ ++++|...++.+....+|..+++.+.+.+.+.
T Consensus 308 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 308 GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888899998876 677777788765 45678899999988899998888877777653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.4e-10 Score=104.80 Aligned_cols=158 Identities=9% Similarity=-0.049 Sum_probs=112.4
Q ss_pred HhHhhhccccchhhhhhhhcCCCcchhhHHHHHHH-HHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc-----
Q 014301 13 SCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASF-LGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL----- 86 (427)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----- 86 (427)
+............+.+.+|.|.++++.|++..... ....++.++.|++.||+|+|+.+..+..+.++.......
T Consensus 219 l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 298 (390)
T TIGR02718 219 LSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFW 298 (390)
T ss_pred HHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33333333334556666778999999999988876 466778899999999999999998877665333322221
Q ss_pred -hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCc-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccch
Q 014301 87 -VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSG-CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAW 163 (427)
Q Consensus 87 -~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~w 163 (427)
.++...+.....+.+++.+.. +...+.+.+..++ +++++.+++.+...++|..+|+.+++.+.+ ..||
T Consensus 299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~---------~~G~ 369 (390)
T TIGR02718 299 LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD---------RFGY 369 (390)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHcc
Confidence 233444455556666666655 6666666666665 789999999999999999888888877776 5689
Q ss_pred hHHHHHHHHHHHHHHH
Q 014301 164 RLAFIVPSTFQALTAI 179 (427)
Q Consensus 164 r~~f~~~~~~~~~~~~ 179 (427)
+..|+..++..++..+
T Consensus 370 ~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 370 AGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888776666443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6e-10 Score=99.79 Aligned_cols=164 Identities=16% Similarity=0.173 Sum_probs=118.4
Q ss_pred HHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHH
Q 014301 229 GFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVL 308 (427)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (427)
+...+..+....-+...+.+++|+|+.|.+++.+++.+.+.+.+++.|.+.||+|.|+ ....+.++..+-.+.
T Consensus 23 f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~-------~~~~s~~l~~IP~~~ 95 (417)
T COG2223 23 FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRK-------WTILSMLLLLIPCLG 95 (417)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchH-------HHHHHHHHHHHHHHH
Confidence 3334444445555555666889999999999999999999999999999999999997 555555555554444
Q ss_pred Hhhcc---chHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH-hhccccc---chh
Q 014301 309 LGRVN---SLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFS---KQT 380 (427)
Q Consensus 309 ~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~---~~~ 380 (427)
..+.. +.+..++.-.+.|++ |..+...++.++ -.|||++|.++|+.. .+|+|..+...+. ......+ |+.
T Consensus 96 ~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~ 173 (417)
T COG2223 96 LAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRN 173 (417)
T ss_pred HHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHH
Confidence 44433 344666666666665 344566666777 469999999999999 9999988888777 5555555 777
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 014301 381 SISVMGLMMIVCTLPVSLIYF 401 (427)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~ 401 (427)
.-.+.....++..+..++..+
T Consensus 174 ~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 174 VAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 777777777776666665554
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=103.60 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=88.0
Q ss_pred cccchhhhhhh-hcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHH-H---HhchhhHHHHH
Q 014301 20 SIPPLIPIIRH-DLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVL-S---ASLVSSPQSFI 94 (427)
Q Consensus 20 ~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~---~~~~~~~~~l~ 94 (427)
......|.+.+ .+|.+..+.++....+.++..++.++.|+++||+|||+.++.+..+..+... . ....+++....
T Consensus 256 ~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (434)
T PRK15075 256 LITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARML 335 (434)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 34555676654 4899999999999999999999999999999999999998876554332221 1 11234454555
Q ss_pred HHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhh-hhHHHHHHHHHHHH
Q 014301 95 LVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWAN-MGAGVSQLLMPLIF 149 (427)
Q Consensus 95 ~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~~g~~~~~~l~ 149 (427)
...++.|++.+.. +....++.|.+|+++|+...++...... ++..++|.+.+.+.
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~ 392 (434)
T PRK15075 336 AVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLI 392 (434)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHH
Confidence 5566666666655 5556778999999999999987543222 22334444444333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-11 Score=109.35 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=128.5
Q ss_pred hhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 014301 246 FYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVF 325 (427)
Q Consensus 246 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (427)
.++.+|.++...|++.....+...++++++|++.||+.|++ ++..+..+-.+..+...+....|.+.+.-.+.
T Consensus 59 v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~-------v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~v 131 (493)
T KOG1330|consen 59 VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKR-------VIAVGIFIWTLAVFASGFSNHFWQVLLCRGFV 131 (493)
T ss_pred HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcce-------EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567999999999999999999999999999999999998 66667777777777777778899999999999
Q ss_pred HHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcc-cccchhHHHHHHHHHHHHHHHHHhhccc
Q 014301 326 SVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGS-KFSKQTSISVMGLMMIVCTLPVSLIYFP 402 (427)
Q Consensus 326 g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (427)
|+|.....|...++++|. +.++|++++++.+....+|..+|-... ...+ +..|++++...+++.+++.++..++.+.
T Consensus 132 GiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 132 GIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred ccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 999999999999999965 778899999999999999988887777 3333 3449999999999988888887766554
Q ss_pred cC
Q 014301 403 QW 404 (427)
Q Consensus 403 ~~ 404 (427)
.+
T Consensus 212 P~ 213 (493)
T KOG1330|consen 212 PE 213 (493)
T ss_pred cc
Confidence 43
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-10 Score=107.24 Aligned_cols=180 Identities=11% Similarity=0.086 Sum_probs=125.5
Q ss_pred hcCchHHHHHHHHHHHHHHHhhh----hhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchh
Q 014301 216 LKNYRGWILGLTYGFCFGVELTT----DNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGR 291 (427)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 291 (427)
.++++++..+....+.....+.. .+.++ +...+.|-++. ..++.....++..++.++.|+++|.+|||.
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~-~I~~diG~~~~-~~w~~~~~~l~~av~~~~~G~LSDlfGRr~----- 109 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILP-YINADIGGSDN-WSWFSTAWTLASAVSFPFVGRLSDLFGRRY----- 109 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHhcCCCcc-chHHHHHHHHHHHHHHHhhHHHHHHhcchH-----
Confidence 45566665554444433322222 22333 44455576644 456666677888899999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 292 LWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
....+.++..++.++....++....+.+..+.|++.+..... ...++| .|.|.|+...++.....-.....+|.+.
T Consensus 110 --~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia 186 (599)
T PF06609_consen 110 --FFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIA 186 (599)
T ss_pred --HHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHH
Confidence 788888888889999998999999999999999987665533 333555 4888888776666554445555677776
Q ss_pred -hhcccccchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014301 371 -FSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWG 405 (427)
Q Consensus 371 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (427)
......+|++.+.+..+...++.+...+.+++.++
T Consensus 187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~ 222 (599)
T PF06609_consen 187 QLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPR 222 (599)
T ss_pred HHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 55567799999999888877777776666655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-08 Score=100.02 Aligned_cols=161 Identities=15% Similarity=0.066 Sum_probs=120.4
Q ss_pred cchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccc-cCCchHHHHHHHHHHHHHHHHhchhh--------HHH
Q 014301 22 PPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDL-LGPRVASATLSLITAPIVLSASLVSS--------PQS 92 (427)
Q Consensus 22 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~ 92 (427)
..+...+.+.+|.++++...+...+....-+..+++|+++|+ +||++.+..+.++..++..+.+++.. ...
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 344455667789999988888888888888899999999996 59999999999999999888776421 234
Q ss_pred HHHHHHHHhhccccc-cchHHHHHcccCccc---cccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHH
Q 014301 93 FILVRFLVGFCLANF-VANQFWMSSMFSGCV---VGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFI 168 (427)
Q Consensus 93 l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~ 168 (427)
.+++-.+..+|.|+. +...+...|.+++++ |-+.+.++....++|+.+++.+.+.+...... .....+|...|.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~--fg~~~~~~~aF~ 165 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC--FGCQDCYPLAFG 165 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cccCcchHHHHH
Confidence 667778888899988 888888999887653 55677777777888887777666665432100 001347999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 014301 169 VPSTFQALTAIMVLIY 184 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~ 184 (427)
+.++..++..+.....
T Consensus 166 i~~i~m~ia~lvf~~g 181 (654)
T TIGR00926 166 VPAILMILALIVFMAG 181 (654)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9988887776665443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.6e-10 Score=107.58 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhH--HHHHHHHHHHhhccccc-cchHHHHHcc
Q 014301 41 TAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSP--QSFILVRFLVGFCLANF-VANQFWMSSM 117 (427)
Q Consensus 41 ~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~-~~~~~~i~~~ 117 (427)
+......+...++.++.+++.||+|||+.+..+.++.+++.++..+.++. +...+.-++.+++.+.. +....+.+|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344556677788889999999999999999999988888877776543 44455556666666554 6677788999
Q ss_pred cCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCC
Q 014301 118 FSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQD 187 (427)
Q Consensus 118 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~ 187 (427)
+|++.|+.++|+.+....+|..++|.+.+ +. ..++..++.+.++..++..+..++++|.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~lpet 497 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LG----------EKWLFLPLVLFGGLALLAGILTLFLPET 497 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH----------HHHHhhHHHHHHHHHHHHHHHHHcCcCC
Confidence 99999999999999888888877776665 22 3467778888888877777776666543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.2e-08 Score=89.87 Aligned_cols=355 Identities=15% Similarity=0.118 Sum_probs=197.7
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhhhhhcCC-CcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNL-TDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPI 80 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (427)
|..+..+...+++..+.-++....|.+..+..- +---.+...-.-.+...+.++..|...||..|.++.-.+.+.--++
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS 81 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence 345566777777777777777788877666532 3333344444556677788899999999999999987776663222
Q ss_pred HHHHh------ch--h----hHHHH---HHHHHHHhhccccc-cchHHHH-Hccc------Cccccccchhhhhhhhhhh
Q 014301 81 VLSAS------LV--S----SPQSF---ILVRFLVGFCLANF-VANQFWM-SSMF------SGCVVGLANGVSAGWANMG 137 (427)
Q Consensus 81 ~~~~~------~~--~----~~~~l---~~~r~l~G~~~~~~-~~~~~~i-~~~~------~~~~r~~~~~~~~~~~~~G 137 (427)
..+.. +. + +-+.. ++.-.+.|.-.-.. ......+ .||. +++.+.+.++...-.-.+.
T Consensus 82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~c 161 (432)
T PF06963_consen 82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFC 161 (432)
T ss_pred HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHH
Confidence 22211 11 1 11222 22222222222222 2222222 4443 2344556666655555556
Q ss_pred HHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHH----cCCCCCC------Ccccccccch----hh
Q 014301 138 AGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIY----GQDLPSG------NYKEFKKTKT----ES 203 (427)
Q Consensus 138 ~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~----~~~~~~~------~~~~~~~~~~----~~ 203 (427)
-.++|++.+.+.. ..+.+....+.++..++..++=+++ .+..|+- ++++.+++.+ ++
T Consensus 162 kllaPl~vG~l~t---------~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
T PF06963_consen 162 KLLAPLFVGLLMT---------FASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESS 232 (432)
T ss_pred HHHHHHHHHHHhh---------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccccccccccccc
Confidence 6556555555443 5677777777777666655542221 1222211 1100000000 00
Q ss_pred hh-----------hhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhccc
Q 014301 204 RE-----------EKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSR 272 (427)
Q Consensus 204 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~ 272 (427)
+. ++..+.++..+++| .+...+...+.++...++......|+.++ |+++...|.+-+...+.++.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~w~~Y~~q~-vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT 310 (432)
T PF06963_consen 233 SDPSILKRLWNPLRTIIRGWRTYFRQP-VFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGT 310 (432)
T ss_pred chhhHHHHHHHHHHHHhccHHHHHhCH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 00 11122234445554 44455555555666667778888899887 9999999999999999999999
Q ss_pred ccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc------chHHHHHHHHHHHHHhhhhhhhhhhccc-ccCc
Q 014301 273 PMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN------SLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSK 345 (427)
Q Consensus 273 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 345 (427)
+...++.+|+|..+. ..+.+..-..+..++........ +...+..+.++--+|.-..--...-+.+ ++|+
T Consensus 311 ~~~p~l~~riGlvr~---G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~ 387 (432)
T PF06963_consen 311 WVYPWLMKRIGLVRA---GLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE 387 (432)
T ss_pred HHHHHHHHHhcchhh---HHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH
Confidence 999999999997652 22222111111112211111112 2223333444444544444334444555 5799
Q ss_pred CcceeeeehhcchhhhhhHHHHHHH
Q 014301 346 RSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 346 ~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
++||+.+|.-+...++...+.-.+.
T Consensus 388 ~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 388 SERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888777665555
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=102.25 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=95.6
Q ss_pred cccchhhhh-hhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHh----chhhHHHHH
Q 014301 20 SIPPLIPII-RHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSAS----LVSSPQSFI 94 (427)
Q Consensus 20 ~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~----~~~~~~~l~ 94 (427)
......|.+ .+++|.+..+.+...++..++..+++++.|+++||+|||+.+.....+.++...... ..++....+
T Consensus 261 ~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (432)
T PRK10406 261 TFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAF 340 (432)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 344456654 566899998999999988888889999999999999999988776665433322111 122333222
Q ss_pred HHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHH
Q 014301 95 LVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTF 173 (427)
Q Consensus 95 ~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~ 173 (427)
..-.+.+...+.. .....+++|++|++.|+.+.|+.+...+. +.....|.+...+.+ ...|...++..++.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~---~~g~~~p~~~~~l~~-----~g~~~~~~~~~~~~ 412 (432)
T PRK10406 341 GLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANA---LFGGSAEYVALSLKS-----IGMETAFFWYVTLM 412 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHH---HHHhHHHHHHHHHHH-----hCCCcHHHHHHHHH
Confidence 2222222333333 44556779999999999999998654443 211223444443322 22355666666555
Q ss_pred HHHHHHHHHHH
Q 014301 174 QALTAIMVLIY 184 (427)
Q Consensus 174 ~~~~~~~~~~~ 184 (427)
.++..+..+++
T Consensus 413 ~~i~~~~~~~l 423 (432)
T PRK10406 413 AVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHh
Confidence 55555544443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-07 Score=88.32 Aligned_cols=261 Identities=9% Similarity=-0.051 Sum_probs=154.9
Q ss_pred chhhhhhhhcCC-----CcchhhHHHHHHHHHHHHh-hccccccccccCCchHHHHHHHHHHHHHHHHhch----h----
Q 014301 23 PLIPIIRHDLNL-----TDTDVGTAGMASFLGSIFS-RLAMGPVCDLLGPRVASATLSLITAPIVLSASLV----S---- 88 (427)
Q Consensus 23 ~~~~~i~~~~~~-----s~~~~g~~~s~~~l~~~~~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~---- 88 (427)
.++-+++|.+.. +.+.+.++-+...+..++. .++.+++++|++|++.+-.....+.....+.++. +
T Consensus 24 ~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~ 103 (472)
T TIGR00769 24 TILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLH 103 (472)
T ss_pred HHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcC
Confidence 345566666655 3367889988888877777 8999999999999999988887777766666554 1
Q ss_pred -----------------------hHHHHHHHHHHHhhccccc-c-chHHHHHcccCccccccchhhhhhhhhhhHHHHHH
Q 014301 89 -----------------------SPQSFILVRFLVGFCLANF-V-ANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQL 143 (427)
Q Consensus 89 -----------------------~~~~l~~~r~l~G~~~~~~-~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~ 143 (427)
+.|...+.-+...+-.... . ..-.++.|.++.+|-.|..+++..+.++|..+|+.
T Consensus 104 p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~ 183 (472)
T TIGR00769 104 PTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGR 183 (472)
T ss_pred CcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233334444444444433 2 45567899999999999999998888888877766
Q ss_pred HHHHHHHHHhhccCCcccchh----HHHHHHHHHHHHHHHHHHHHcCCCCCCCc---ccccccchhhhhhhhHHHHHhhh
Q 014301 144 LMPLIFTAITSLNVGTHTAWR----LAFIVPSTFQALTAIMVLIYGQDLPSGNY---KEFKKTKTESREEKFVHVLFNGL 216 (427)
Q Consensus 144 ~~~~l~~~l~~~~~~~~~~wr----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 216 (427)
+...+....... ..+...|. ..+.+.++...+...+.+++.++..++++ .+.++++++++ .+..+.++.++
T Consensus 184 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k-~~~~es~k~i~ 261 (472)
T TIGR00769 184 TIKYFSKLRASL-GPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPK-MSTMESLKFLV 261 (472)
T ss_pred HHHHHHHhhhcc-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCC-CCHHHHHHHHH
Confidence 655554321110 01123452 33344444444444444444332211111 01111111222 56788899999
Q ss_pred cCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHH----HHHHHHHHHHhhhcccccchhhhhhhcccc
Q 014301 217 KNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQV----AGTIAASFGMANLFSRPMGGVISDRMGRRF 286 (427)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 286 (427)
|+|..+.+++...+............-..+.+.+- ++.+ .|......++..++.+++.+++.+|+|-+.
T Consensus 262 ~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~ 334 (472)
T TIGR00769 262 SSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLT 334 (472)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99988777777666555544444433344444432 3322 233444455555566666688888887764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.7e-10 Score=101.58 Aligned_cols=154 Identities=12% Similarity=0.066 Sum_probs=121.9
Q ss_pred hhhhcchhhhccCCcHHH-HHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHH
Q 014301 239 DNIIAQYFYDRFGVNLQV-AGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWG 317 (427)
Q Consensus 239 ~~~~~~~l~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (427)
.++...++.+++|+++.+ .|.+.+....+..+..+++|+++||+|.|+ .+..+.+...+...+..+.++...
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~-------vL~l~~l~Wsl~t~L~~fa~Sl~~ 117 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP-------VLVLQALSFVCVWLLLLLGTSVWH 117 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555777788999999 999999999999999999999999999997 777777777777777778788888
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHH---HHHHHHHHHH
Q 014301 318 SVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSI---SVMGLMMIVC 392 (427)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~ 392 (427)
+.+.-+++|++.+..+ ....++. -+|+++|+++.|+.+....+|.++++++. . ....+|+.-. .+......++
T Consensus 118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a 195 (511)
T TIGR00806 118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFS 195 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHH
Confidence 8999999999999988 6666666 67999999999999999999999999998 4 4455665433 2333333444
Q ss_pred HHHHHhhcc
Q 014301 393 TLPVSLIYF 401 (427)
Q Consensus 393 ~~~~~~~~~ 401 (427)
.++.+++..
T Consensus 196 ~~~a~~LP~ 204 (511)
T TIGR00806 196 VFLALFLKR 204 (511)
T ss_pred HHHHHhCCC
Confidence 444444443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=105.01 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=102.8
Q ss_pred ccccchhhhhhhhcCCCcchhhH------------HHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc
Q 014301 19 FSIPPLIPIIRHDLNLTDTDVGT------------AGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL 86 (427)
Q Consensus 19 ~~~~~~~~~i~~~~~~s~~~~g~------------~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 86 (427)
+......|.+.++.|.++.+.+. ...+..++..++.+..++++||+|||+.++.+..+.+++..+.++
T Consensus 305 y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~ 384 (502)
T TIGR00887 305 YGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF 384 (502)
T ss_pred HccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 34445577777788876543221 233444566678889999999999999998888877766655554
Q ss_pred hhh----HHHHHHHHHHHhhc-cccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhh-ccCCcc
Q 014301 87 VSS----PQSFILVRFLVGFC-LANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITS-LNVGTH 160 (427)
Q Consensus 87 ~~~----~~~l~~~r~l~G~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~-~~~~~~ 160 (427)
..+ ...+...-+...++ .+..+....+.+|.+|.+.|+++.++.+....+|..+++.+.+.+.+.-.. .+....
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 464 (502)
T TIGR00887 385 AYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTG 464 (502)
T ss_pred HHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccc
Confidence 321 11111111111121 222244556679999999999999999999988888777776665431000 000001
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHc
Q 014301 161 TAWRLAFIVPSTFQALTAIMVLIYG 185 (427)
Q Consensus 161 ~~wr~~f~~~~~~~~~~~~~~~~~~ 185 (427)
.++...|++.++..++..+..+++|
T Consensus 465 ~~~~~~~~i~~~~~~~~~i~~~~lp 489 (502)
T TIGR00887 465 IWMGHVLEIFALFMFLGILFTLLIP 489 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHheEec
Confidence 3456678888777776655544443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-10 Score=107.19 Aligned_cols=144 Identities=10% Similarity=0.077 Sum_probs=113.2
Q ss_pred ccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHH
Q 014301 249 RFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLG--RVNSLWGSVLVMCVFS 326 (427)
Q Consensus 249 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g 326 (427)
+++++..+.|.+.+.+.++..+++++.|++.||+|+|+ .+..+..+..+...... ...+.+..++.-++.|
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-------~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G 142 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKW-------SIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQG 142 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcch-------hhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 57899999999999999999999999999999999997 44444444444433332 2234566777778889
Q ss_pred HHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhccc-ccchhHHHHHHHHHHHHHHHHHhh
Q 014301 327 VFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSK-FSKQTSISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 327 ~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 399 (427)
++.+...+....+.++ .|+++|++++|+.+....+|..++|.+. ...+. .+|+..|.+.++..++..++....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 143 LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred HhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence 9999999888888885 4788999999999999999999999998 66566 489999988877766655544433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=96.49 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=124.8
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-
Q 014301 29 RHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF- 107 (427)
Q Consensus 29 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~- 107 (427)
++++|++..+...+.....+..+++++++|++.||+|.|+++..++++..+..+..-+...-..+.+.-.+.|...|..
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 4589999999999999999999999999999999999999999999998888887777777777777888999999987
Q ss_pred cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHc
Q 014301 108 VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYG 185 (427)
Q Consensus 108 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 185 (427)
..+.++.++..|+++-++.+|+++.....++.+||.+...+.+. ..+-|..+....++..+..+..+..+
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i--------Tg~~r~g~~~i~vll~iGl~~L~~v~ 429 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI--------TGSSRAGVLSIIVLLLIGLLLLLRVK 429 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH--------hcchhhHHHHHHHHHHhhHhhEEeec
Confidence 88899999999999999999999999999888888777766654 34567777666655555444444443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=115.06 Aligned_cols=147 Identities=18% Similarity=0.062 Sum_probs=120.9
Q ss_pred cchhh-hhhhhcCCCcc-hhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 014301 22 PPLIP-IIRHDLNLTDT-DVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFL 99 (427)
Q Consensus 22 ~~~~~-~i~~~~~~s~~-~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 99 (427)
...+| .+.+++|.+.. +.+++.+...++..+++++.|+++||+++|+.+.++.++.+++.++..+.++.+.+++..++
T Consensus 252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1146)
T PRK08633 252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFL 331 (1146)
T ss_pred HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33444 45667899998 99999999999999999999999999999999999998888888888888899999999999
Q ss_pred Hhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHH
Q 014301 100 VGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQAL 176 (427)
Q Consensus 100 ~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~ 176 (427)
.|++.+.. ++..+++.+..|+++||+++++.+....+|..+++.++..+... ..++...+++.+.+.++
T Consensus 332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL--------GLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------ccCHHHHHHHHHHHHHH
Confidence 99999876 77888889999999999999999988888887777666655431 23566666665554443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=105.21 Aligned_cols=155 Identities=12% Similarity=-0.013 Sum_probs=107.6
Q ss_pred HhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc--
Q 014301 235 ELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV-- 312 (427)
Q Consensus 235 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 312 (427)
.+.+..+.+ .+++++|+|..+.+.+.+... ......++.|++.||+|+|+ .+..+.++..++.......
T Consensus 43 ~y~fsv~s~-~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~-------vllig~ll~~iG~ll~ala~~ 113 (591)
T PTZ00207 43 MYAFNLISG-AMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRP-------IFVLSMTVFCLGTLLFALTFQ 113 (591)
T ss_pred HHHHHHHHH-HHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence 334443344 467788999999988876633 33345667899999999997 6666666666666655554
Q ss_pred ----cchHHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH--hhcccccchhHHHHHH
Q 014301 313 ----NSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL--FSGSKFSKQTSISVMG 386 (427)
Q Consensus 313 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~ 386 (427)
++.+.+.+..++.|++.+...+.......+..|++||++.|+......+|+++.+.+. ... .+++..+++.+
T Consensus 114 ~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~ 191 (591)
T PTZ00207 114 EVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLM 191 (591)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHH
Confidence 4677777788888888777766666666655578899999999999999998755555 332 34566666666
Q ss_pred HHHHHHHHHHHhhc
Q 014301 387 LMMIVCTLPVSLIY 400 (427)
Q Consensus 387 ~~~~~~~~~~~~~~ 400 (427)
+..++..++.....
T Consensus 192 vl~~vv~ll~~~~v 205 (591)
T PTZ00207 192 SFALVVGILAIVFM 205 (591)
T ss_pred HHHHHHHHHHHhhe
Confidence 66665555544433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=4e-09 Score=99.30 Aligned_cols=150 Identities=13% Similarity=0.119 Sum_probs=102.3
Q ss_pred hhhhhhhcCCCcchhhHHHHHH-HHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHH---hch-hhHHHHHHHHHH
Q 014301 25 IPIIRHDLNLTDTDVGTAGMAS-FLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSA---SLV-SSPQSFILVRFL 99 (427)
Q Consensus 25 ~~~i~~~~~~s~~~~g~~~s~~-~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l 99 (427)
.|.+.+++|.++++.+++.+.. ..+..++.++.|++.||+|+|+.+..+..+..+..+.. +.. ++.+.+++.-++
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4557778999999999998665 45688999999999999999998877777655544332 343 456666655544
Q ss_pred ----Hhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHH
Q 014301 100 ----VGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQ 174 (427)
Q Consensus 100 ----~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~ 174 (427)
.|++.+.. .....++.+.+|++++ ++.+...++|...++.+++.+.+ +.||+..|.+.++++
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~---------~~G~~~~f~~~~~~~ 379 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVE---------AYGWPGFYLMTVVIA 379 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH---------HhChHHHHHHHHHHH
Confidence 44444444 5555666777776554 44444445666544445555554 779999999999888
Q ss_pred HHHHHHHHHHcCC
Q 014301 175 ALTAIMVLIYGQD 187 (427)
Q Consensus 175 ~~~~~~~~~~~~~ 187 (427)
++..++.+..+++
T Consensus 380 ~~~~~~~~~~~~~ 392 (402)
T PRK11902 380 LPGLALLWLMRGT 392 (402)
T ss_pred HHHHHHHHHHhhh
Confidence 8776666555443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=99.92 Aligned_cols=144 Identities=13% Similarity=0.074 Sum_probs=104.4
Q ss_pred hhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHH
Q 014301 239 DNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGS 318 (427)
Q Consensus 239 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (427)
...+|.+ ++++|.|+.+.++..+...++..++.++.|++.||+|+|+ .+..+..+..+..... ..++.+..
T Consensus 20 ~~~lp~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~~~-~~~~~~~l 90 (355)
T TIGR00896 20 GPLLPQI-RSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEER-------SVAAGLLLIAAGILIR-SAPGTALL 90 (355)
T ss_pred cccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchH-------HHHHHHHHHHHHHHHH-HhccHHHH
Confidence 3445554 4567999999999999999999999999999999999997 3444444444433333 44666666
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccc--cchhHHHHHHHHHHH
Q 014301 319 VLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKF--SKQTSISVMGLMMIV 391 (427)
Q Consensus 319 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~ 391 (427)
.+..++.|++.+...+.......+..+++|+++.+..+....+|..+++.+. ...+.. +|+..+...++..++
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 7777788888877666666666666567899999999999999999998877 333332 377777665554433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=113.56 Aligned_cols=158 Identities=6% Similarity=-0.046 Sum_probs=119.7
Q ss_pred HhHhhhccccchhhhhh-hhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch----
Q 014301 13 SCFFSTFSIPPLIPIIR-HDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV---- 87 (427)
Q Consensus 13 ~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---- 87 (427)
+..+........+|.+. +.+|.++.+.|++.+.+.++..+++++.|+++||.++++.+..+.++.++..+..++.
T Consensus 236 ~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (1140)
T PRK06814 236 WFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSV 315 (1140)
T ss_pred HHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccc
Confidence 33333334444566554 5589999999999999999999999999999999888887776666665555544443
Q ss_pred ----------------hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHH
Q 014301 88 ----------------SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFT 150 (427)
Q Consensus 88 ----------------~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 150 (427)
++.+.+++..++.|++.+.. ++..+++.+.+|+++||+++|..+....+|..+++++...+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 316 PAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred ccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888999999998876 7888999999999999999999999988888888877666543
Q ss_pred HHhhccCCcccchhHHHHHHHHHHHHHH
Q 014301 151 AITSLNVGTHTAWRLAFIVPSTFQALTA 178 (427)
Q Consensus 151 ~l~~~~~~~~~~wr~~f~~~~~~~~~~~ 178 (427)
. ..++...+++.++..++..
T Consensus 396 ~--------~~~~~~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 396 L--------GFSIPWIILFIALANLIVA 415 (1140)
T ss_pred h--------ccCHHHHHHHHHHHHHHHH
Confidence 1 3466666666555444433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-09 Score=96.59 Aligned_cols=176 Identities=12% Similarity=0.085 Sum_probs=144.0
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhcchhhhccC----CcHHHHHHHHHHHHHhhhcccccchhhhhhh-ccccccchhHH
Q 014301 219 YRGWILGLTYGFCFGVELTTDNIIAQYFYDRFG----VNLQVAGTIAASFGMANLFSRPMGGVISDRM-GRRFGIRGRLW 293 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g----~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~ 293 (427)
|.++.+...-+.--+++++....+..|+....+ +|++++.-+++.+....-+..+++||++||+ |+|+
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~------- 93 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR------- 93 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-------
Confidence 345556666666778888888888888877777 9999998888888877788889999999996 7776
Q ss_pred HHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHhhhhhhhhhhccccc-CcC--cceeeeehhcchhhhhhHHHHH
Q 014301 294 GLWAVQTAAGLLCVLLGRVN--SLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKR--SLGVISGMTGSGGTVGAVVTQM 368 (427)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~--~~g~~~g~~~~~~~~g~~~~~~ 368 (427)
.+..+.++..++.+++...+ +...+.+.+.+.++|.|..-+...++..+. |++ +|-.++++.....++|+.++|.
T Consensus 94 tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~ 173 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPI 173 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHH
Confidence 67777788888888777763 567788888888999999988888888865 322 2777899999999999999999
Q ss_pred HH-hhcccccchhHHHHHHHHHHHHHHHHHhhcc
Q 014301 369 LL-FSGSKFSKQTSISVMGLMMIVCTLPVSLIYF 401 (427)
Q Consensus 369 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (427)
+. ...+.++|..+|...++-+.++.+.....++
T Consensus 174 i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 174 ITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99 8899999999999999988888887766654
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.3e-09 Score=97.73 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhh----hccccccchhHHHHHH
Q 014301 222 WILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDR----MGRRFGIRGRLWGLWA 297 (427)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~~~~~ 297 (427)
..+....+...+.+.....+.++|+++ +|.++.+.+.......+...+..++.|+++|| +|||++ .+..
T Consensus 7 i~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp------~il~ 79 (477)
T TIGR01301 7 LRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP------FIAA 79 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH------HHHH
Confidence 334444444455666666778888754 69999999999999999999999999999994 888862 2222
Q ss_pred HHHHHHHHHHHHhhccch-----------------HHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcc--eeeeehhcc
Q 014301 298 VQTAAGLLCVLLGRVNSL-----------------WGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSL--GVISGMTGS 357 (427)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~--g~~~g~~~~ 357 (427)
+.....+.+.++.+.++. +..++...+..++.+...++..++..|. |+++| +.+++..+.
T Consensus 80 g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~ 159 (477)
T TIGR01301 80 GAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF 159 (477)
T ss_pred HHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence 333444444444443321 2334445556677888888888888876 65544 678999999
Q ss_pred hhhhhhHHHHHHH-hh--ccc-------------ccchhHHHHHHHHHHHHHHHHHhhc
Q 014301 358 GGTVGAVVTQMLL-FS--GSK-------------FSKQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 358 ~~~~g~~~~~~~~-~~--~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
..++|+.+++.+. .. .+. .+.+..|.+.+++.+++.+......
T Consensus 160 ~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v 218 (477)
T TIGR01301 160 FMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAV 218 (477)
T ss_pred HHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeee
Confidence 9999999998876 32 111 1566778777777777766655543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-09 Score=95.55 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=95.7
Q ss_pred ccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhcccccccc----ccCCchHHHHHHHH-HHHHHHHHhchhhHHH---
Q 014301 21 IPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCD----LLGPRVASATLSLI-TAPIVLSASLVSSPQS--- 92 (427)
Q Consensus 21 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~~~~~~~~-~~~~~~~~~~~~~~~~--- 92 (427)
-....|++.+++|++....+.+--...+...+.+++.|..+| ||||||.++..... ..++.++.+++.++..
T Consensus 51 elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lg 130 (498)
T KOG0637|consen 51 ELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLG 130 (498)
T ss_pred HhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhc
Confidence 345567777889999999999988888889999999999999 57998887766555 7777777777665432
Q ss_pred --------------HHHHHHHHhhccccc-cchHHHHHcccCcccccc-chhhhhhhhhhhHHHHHHHHH
Q 014301 93 --------------FILVRFLVGFCLANF-VANQFWMSSMFSGCVVGL-ANGVSAGWANMGAGVSQLLMP 146 (427)
Q Consensus 93 --------------l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~~~~ 146 (427)
++++--+.=++.-.. .++.+++.|...++++.+ +++.+..+..+|..+|..+++
T Consensus 131 d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 131 DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 233333333444343 788999999998877766 999998888888887777665
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=100.44 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=97.2
Q ss_pred HhhhccccchhhhhhhhcCCCcchhhHHHHHHH-HHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch------
Q 014301 15 FFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASF-LGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV------ 87 (427)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------ 87 (427)
...........|.+.+++|.++++.+.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+.
T Consensus 222 ~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (356)
T TIGR00901 222 KLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHH 301 (356)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 333344555667666679999999998887765 6788999999999999999999998888877776655443
Q ss_pred -----hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhh
Q 014301 88 -----SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWAN 135 (427)
Q Consensus 88 -----~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 135 (427)
++.+.+..+.++.+++.+.. +...+++.|.+|+++||+.+++.+...+
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 302 DGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 45677888899999999976 8889999999999999999998866543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-07 Score=82.79 Aligned_cols=306 Identities=14% Similarity=0.127 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHccc
Q 014301 40 GTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMF 118 (427)
Q Consensus 40 g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~ 118 (427)
+.+.-+-.+...+..+.+.+..+|+..+.=.....++..++.++.++++|.+.=+++-.+.+++.|.- .....+ +..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 44666666777788888889999998777677778889999999999999999899999999998864 555554 4455
Q ss_pred CccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCC-ccccc
Q 014301 119 SGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGN-YKEFK 197 (427)
Q Consensus 119 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 197 (427)
++. ..+-+ ..|...+.++|+.....+.+. ..+-|..+++...+.++..+..+++.++++.++ ..+.+
T Consensus 141 ~~~----~l~~w----ssGTG~aGl~Ga~~y~~lT~~----g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~ 208 (402)
T PF02487_consen 141 GKS----SLSAW----SSGTGGAGLVGALYYLGLTTL----GLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESE 208 (402)
T ss_pred Ccc----ccccc----cCCcChhhHHHHHHHHHHHHh----CcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccC
Confidence 532 34444 444444445555444433321 235577888777776665555554443322111 00000
Q ss_pred ------c-----cc-hhh----hhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhh-hhcchhh-hccCCcHHHHHH
Q 014301 198 ------K-----TK-TES----REEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN-IIAQYFY-DRFGVNLQVAGT 259 (427)
Q Consensus 198 ------~-----~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~-~~~g~s~~~~~~ 259 (427)
+ +. +.+ .+.+.++.++. -|+.+...+-.+...+.++..+. ..+.... +...-..++..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~ 285 (402)
T PF02487_consen 209 SEDEAEDDLLESETSESKPDSSSKLSFKEKLKR---LKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRW 285 (402)
T ss_pred CCCcccccccccccccccccccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHH
Confidence 0 00 000 00111122221 12222244444444445554433 2333221 222222345556
Q ss_pred HHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHH---HHhhccchHHHHHHHHHHHHHhhhhhhhh
Q 014301 260 IAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCV---LLGRVNSLWGSVLVMCVFSVFVQAAGGLT 336 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (427)
....+.++..+++--...+ |+ | +++.......+-.+.+. ...+.++.|...+.++.-|+..|..+...
T Consensus 286 Y~~~YQ~GVFISRSS~~~~--ri--r-----~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt 356 (402)
T PF02487_consen 286 YQLLYQLGVFISRSSLPFF--RI--R-----RLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT 356 (402)
T ss_pred HHHHHHHHHhhhhcceeee--eh--h-----hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 6666777777765433222 22 2 22333333333222222 23334677777778888888888888877
Q ss_pred hhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 337 FGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 337 ~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+..+. +.++++|..++|.......+|..++..+.
T Consensus 357 F~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 357 FYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 76666 78899999999999998889988888776
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-08 Score=91.35 Aligned_cols=164 Identities=23% Similarity=0.275 Sum_probs=127.4
Q ss_pred HHHHHHHhHhhhccccchhhhhhhhcCCCc--chhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHH
Q 014301 7 AWLSLFSCFFSTFSIPPLIPIIRHDLNLTD--TDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSA 84 (427)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~--~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (427)
.....+....+.....+..+.+.++++.+. .+.++..+.+.++..+++++.|.+.||+|||+.+..+......+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 86 (338)
T COG0477 7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL 86 (338)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence 344445555566667778888888888776 588999999999999999999999999999988888887766666677
Q ss_pred hchhh--HHHHHHHHHHHhhccccc-cchHHHHHcccCc-cccccchhhhhh-hhhhhHHHHHHHHHHHHHHHhhccCCc
Q 014301 85 SLVSS--PQSFILVRFLVGFCLANF-VANQFWMSSMFSG-CVVGLANGVSAG-WANMGAGVSQLLMPLIFTAITSLNVGT 159 (427)
Q Consensus 85 ~~~~~--~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~l~~~~~~~ 159 (427)
++.++ .+.+++.|+.+|++.+.. +...+++.|+.|+ ++|+...+.... ....|..+++.++..+... .
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----- 159 (338)
T COG0477 87 ALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA--L----- 159 (338)
T ss_pred HhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----
Confidence 77666 999999999999999876 8888899999987 678888888877 4666776666555555443 1
Q ss_pred ccchhHHHHHHHHHHHHH
Q 014301 160 HTAWRLAFIVPSTFQALT 177 (427)
Q Consensus 160 ~~~wr~~f~~~~~~~~~~ 177 (427)
..+||..|..........
T Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 160 LWGWRAAFLLAALLGLLL 177 (338)
T ss_pred hcchHHHHHHHHHHHHHH
Confidence 568999777766555443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.4e-10 Score=87.04 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=98.5
Q ss_pred HHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 014301 263 SFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF 342 (427)
Q Consensus 263 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 342 (427)
...++..++.+..+++.||++||+ ..........+........++.+...+..++.+++.+...+....+..|
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKP-------VLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhH-------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345677788899999999999987 4444555555555555556777777778888999888888888888775
Q ss_pred -cCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHH
Q 014301 343 -VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVS 397 (427)
Q Consensus 343 -~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (427)
.|+++|+++.+..+....+|..++|.+. ...+..+++..+...+...+++.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA 135 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence 4788899999999999999999999988 666777888888777766666555544
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=94.85 Aligned_cols=175 Identities=13% Similarity=0.151 Sum_probs=132.4
Q ss_pred HHHHhHhhhccccchhhhhhhhcC-CCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch-
Q 014301 10 SLFSCFFSTFSIPPLIPIIRHDLN-LTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV- 87 (427)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~~~~~-~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~- 87 (427)
..++.......+....+...+|.| .+....+.+.++..+.=.+.-...+++..|+|.|+++.++.+..++=..+.+..
T Consensus 215 ~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~ 294 (400)
T PF03825_consen 215 AAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS 294 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444555566666677777 677778888888888888999999999999999999999999999988888877
Q ss_pred hhHHHHHH----HHHHHhhccccc-cchHHHHHcccCccccccchhhhhhh-hhhhHHHHHHHHHHHHHHHhhccCCccc
Q 014301 88 SSPQSFIL----VRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGW-ANMGAGVSQLLMPLIFTAITSLNVGTHT 161 (427)
Q Consensus 88 ~~~~~l~~----~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~g~~~~~~l~~~l~~~~~~~~~ 161 (427)
++.+.... ...++|+..+.+ .+...++.+..|++.|+++.++++.. ..+|..+|..+++.+.+.... .+.+
T Consensus 295 ~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~---~~~~ 371 (400)
T PF03825_consen 295 DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA---RGMF 371 (400)
T ss_pred CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc---hhhh
Confidence 55444333 345699999987 89999999999999999999998764 567888777777777764432 2245
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHcCC
Q 014301 162 AWRLAFIVPSTFQALTAIMVLIYGQD 187 (427)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~~~~~ 187 (427)
.|...+.+.++..++..++.+.+.||
T Consensus 372 ~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 372 DWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 67777888887777766666555443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-09 Score=101.14 Aligned_cols=174 Identities=20% Similarity=0.231 Sum_probs=142.2
Q ss_pred hHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccC--CchHHHHHHHHHHHHH
Q 014301 4 FHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLG--PRVASATLSLITAPIV 81 (427)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~ 81 (427)
+....+...+..++.......+|.+.++.+.+..+.+.+.++..+...++.+..|+++|+.. ++....++++..+++.
T Consensus 300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 44444555556666677888899999999999999999999999999999999999999998 5556677777788888
Q ss_pred HHHhchhhHHHHHHHHHHHhhccccccchHH-HHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcc
Q 014301 82 LSASLVSSPQSFILVRFLVGFCLANFVANQF-WMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTH 160 (427)
Q Consensus 82 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~ 160 (427)
..+++.++++.++..-.+.|++.|.+..... .+.|..+.++-..+.|+...+..++..+||.+++.+.+. .
T Consensus 380 ~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~--------t 451 (509)
T KOG2504|consen 380 LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDI--------T 451 (509)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeec--------c
Confidence 8999999999999999999999998855554 669999999999999999888888776666555543331 3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHc
Q 014301 161 TAWRLAFIVPSTFQALTAIMVLIYG 185 (427)
Q Consensus 161 ~~wr~~f~~~~~~~~~~~~~~~~~~ 185 (427)
.+|...|+..++..++.....+..+
T Consensus 452 g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 452 GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred CCeeeehhhcChHHHHHHHHHHHhH
Confidence 4599999999988888776666555
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-09 Score=93.96 Aligned_cols=145 Identities=17% Similarity=0.114 Sum_probs=128.2
Q ss_pred CCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhh
Q 014301 251 GVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQ 330 (427)
Q Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 330 (427)
+-+..+.|++++...+.+++.+.+.|.+.||+|+|. .+.+++.+....-.++.+.++++..++.=.+-|++..
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~i-------pm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKI-------PMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSA 174 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhcccc-------HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHH
Confidence 556778999999999999999999999999999997 6778888888888888899999999999999999999
Q ss_pred hhhhhhhhccccc-CcCc-ceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHHhhccc
Q 014301 331 AAGGLTFGVVPFV-SKRS-LGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSLIYFP 402 (427)
Q Consensus 331 ~~~~~~~~~~~~~-~~~~-~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (427)
...+...++.++. |++. |++++|+.-.+..+|-.+||... ...+..|+..+|.++++++++-..+-++...+
T Consensus 175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 9999999998854 4443 79999999999999999999999 88899999999999999998888877666544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-09 Score=107.74 Aligned_cols=131 Identities=14% Similarity=0.043 Sum_probs=99.6
Q ss_pred HHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc
Q 014301 233 GVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV 312 (427)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (427)
....++....-..++++++++..+.|++.+.+.++..++.++.+++.||.+||+ .+..+.++.+++.++....
T Consensus 46 ~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~-------~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 46 LLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI-------VIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred HHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce-------EEEecHHHHHHHHHHHhCh
Confidence 334444444555567889999999999999999999999999999999999987 3333333333333333221
Q ss_pred c---------------------------------------------------chHHHHHHHHHHHHHhhhhhhhhhhccc
Q 014301 313 N---------------------------------------------------SLWGSVLVMCVFSVFVQAAGGLTFGVVP 341 (427)
Q Consensus 313 ~---------------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 341 (427)
+ ....++++-++.|++.+..++...+++.
T Consensus 119 hf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~ 198 (633)
T TIGR00805 119 HFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYID 198 (633)
T ss_pred HHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhh
Confidence 1 1334567788899999988999989988
Q ss_pred c-cCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 342 F-VSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 342 ~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
| .|+++|+...|+.+....+|..+|+.+.
T Consensus 199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llg 228 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIAVFGPAFGYLLG 228 (633)
T ss_pred ccCCccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 6 4888999999999999999999998887
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8e-09 Score=98.73 Aligned_cols=145 Identities=13% Similarity=0.043 Sum_probs=104.0
Q ss_pred HHHHHHHHhHhhhccccchhhhh-hhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHH
Q 014301 6 LAWLSLFSCFFSTFSIPPLIPII-RHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSA 84 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (427)
...+..++............|.+ ++.+|.++...++......++..++.++.+++.||+|+|+.+..+..+..++.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~ 311 (448)
T PRK09848 232 MLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLF 311 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555654 44567665554554555567788899999999999999999999999888887777
Q ss_pred hchh--hHHHHHHHHHHHhhccccc-cchHHHHHcccCcc-------ccccchhhhhhhhhhhHHHHHHHHHHHHH
Q 014301 85 SLVS--SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGC-------VVGLANGVSAGWANMGAGVSQLLMPLIFT 150 (427)
Q Consensus 85 ~~~~--~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 150 (427)
.+.+ +++.+++..++.|+|.+.. +...+..+|..|.+ ++|...+..+....+|..+|+.+.+.+..
T Consensus 312 ~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 312 FWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6643 6777777888999998876 77777778877653 34778888888888888877777666554
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=89.89 Aligned_cols=114 Identities=22% Similarity=0.268 Sum_probs=92.8
Q ss_pred ccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 014301 249 RFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVF 328 (427)
Q Consensus 249 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 328 (427)
..+.+...+|++.+.+.+...+.++..|.++||+|||. .+.++.....+.........+...++..=++.|++
T Consensus 62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkp-------vll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~ 134 (451)
T KOG2615|consen 62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKP-------VLLACLIGVALSYLLWALSRNFAAFVLARFLGGIF 134 (451)
T ss_pred cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 33456678899999999999999999999999999997 77777777777777777777774444445666666
Q ss_pred hhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 329 VQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 329 ~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
.+ ..+...++++|+ ++|+|+.+++.++....+|..+||.+.
T Consensus 135 kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIG 176 (451)
T KOG2615|consen 135 KG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIG 176 (451)
T ss_pred cC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhh
Confidence 54 455667788876 788999999999999999999999998
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.2e-08 Score=90.63 Aligned_cols=147 Identities=8% Similarity=0.050 Sum_probs=115.9
Q ss_pred CCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-cchHH
Q 014301 34 LTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-VANQF 112 (427)
Q Consensus 34 ~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~ 112 (427)
.++...|.+.+...+.-++...+..++.+|+|.|+.++++..++++=..++++++|.+.+.+.+.+.|+-.+.. .+...
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999987 99999
Q ss_pred HHHcccCccccccchhhh-hhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014301 113 WMSSMFSGCVVGLANGVS-AGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLP 189 (427)
Q Consensus 113 ~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~ 189 (427)
++++.+|+|-.++...+. +...++|..+.+ .+.+.+-| +.|.+..|++.+.+.+...+...+..++++
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s----~~~G~lyd-----~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILS----PLAGYLYD-----RIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHH----HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHh----hhHHhhHh-----hcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 999999987766655552 344455554444 44444443 779999999999988888777777755433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-08 Score=85.67 Aligned_cols=354 Identities=12% Similarity=0.071 Sum_probs=221.4
Q ss_pred hcCCCcchhh-HHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccccc
Q 014301 31 DLNLTDTDVG-TAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVA 109 (427)
Q Consensus 31 ~~~~s~~~~g-~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 109 (427)
+.|++..|+. -+.-...-.+.+.-.+.=.+.|-.-.|++++.-.+.......+.-+.++.+.+=+.-+..|...+...+
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIA 114 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIA 114 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHh
Confidence 3455555442 122222333444445555689999899998888888888888888999999999999999999888899
Q ss_pred hHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014301 110 NQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLP 189 (427)
Q Consensus 110 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~ 189 (427)
.++++-+..+|+++.++.+...+..-.|...|..++..+.+.- ..+++..=.+.-....+.....+++|+.+
T Consensus 115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~-------~~sy~~LN~ISL~~~~ia~~~A~fLP~v~- 186 (433)
T KOG3810|consen 115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLE-------TLSYTTLNYISLAEVTIAVLLALFLPRVK- 186 (433)
T ss_pred hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhc-------ccchhhhchhhHHHHHHHHHHHhhCCCCc-
Confidence 9999988899999999999887777777766666666555421 22333332333222333334445554432
Q ss_pred CCC---ccc-------ccccchhhh--------hhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccC
Q 014301 190 SGN---YKE-------FKKTKTESR--------EEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFG 251 (427)
Q Consensus 190 ~~~---~~~-------~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 251 (427)
++. +++ .++...+.+ -..+++.+.+..+||+...-.+-+.+....++...++....-.+...
T Consensus 187 rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~ 266 (433)
T KOG3810|consen 187 RSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAP 266 (433)
T ss_pred hhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCC
Confidence 110 000 000000000 02234566677889998877777777777777777666555444321
Q ss_pred -CcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhh
Q 014301 252 -VNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQ 330 (427)
Q Consensus 252 -~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 330 (427)
-.....|..=++..+.++++.+..|.+--...|.. -..+..+.+..+..++.+..+++.|..++...++...+.
T Consensus 267 ~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g-----~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~ 341 (433)
T KOG3810|consen 267 NPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWG-----DLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQ 341 (433)
T ss_pred CchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhh-----HHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHh
Confidence 11122344444555666777777777755444432 234445555566667777788889999999999999888
Q ss_pred hhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHHhhccc----------ccchhHHHHHHHHHHHHHHHHHh
Q 014301 331 AAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLLFSGSK----------FSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 331 ~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
...+....-++ ++..|.-|-.+|+..++.-+-..+-..+. .++. .-|..-|...+++.+++......
T Consensus 342 l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV-vd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~ 419 (433)
T KOG3810|consen 342 LTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLIV-VDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL 419 (433)
T ss_pred hhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE-EcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence 88777755555 77888899999998777666555554443 1111 12444566777777776655433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-08 Score=96.18 Aligned_cols=125 Identities=13% Similarity=0.051 Sum_probs=107.2
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc----------hhhHHHHHHHHH
Q 014301 29 RHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL----------VSSPQSFILVRF 98 (427)
Q Consensus 29 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~ 98 (427)
.+++|.|+.+.|.+.....++..++....+++.+|++.|+++.++.++.+++...... .++.+.....-+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 3578999999999999999999999999999999999999999999998887755431 134445566678
Q ss_pred HHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 014301 99 LVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAIT 153 (427)
Q Consensus 99 l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~ 153 (427)
+.+++.+.. .+...++.+..|+++++...++.+...++|..+++.+++.+.+.+.
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888888865 8889999999999999999999999999999999988888887654
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-07 Score=80.75 Aligned_cols=353 Identities=12% Similarity=0.011 Sum_probs=186.0
Q ss_pred HHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhcccccccc-----ccCCchHHHH-HHHHHH
Q 014301 5 HLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCD-----LLGPRVASAT-LSLITA 78 (427)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~~~~ 78 (427)
......+.+.+.-....+ .+|.+.+.=|.|.++.+...-++ ..+ -.-+.+.++.| |+||||..++ +..+.+
T Consensus 34 llLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG 110 (510)
T KOG3574|consen 34 LLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-WPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLG 110 (510)
T ss_pred HHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-hHH-HHHHHHHhhhHHHHHHhhccccceeeehHHHHH
Confidence 334444444455455566 88998888888888877654332 222 24567888899 9999997654 223333
Q ss_pred HHHHHHhc-----------hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHH
Q 014301 79 PIVLSASL-----------VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMP 146 (427)
Q Consensus 79 ~~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 146 (427)
......+. .++...+...-++.-+..+.. .+...+.-.+..+++.|-+..-...+.+.|..+|..+.-
T Consensus 111 ~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifL 190 (510)
T KOG3574|consen 111 LFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFL 190 (510)
T ss_pred HHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceee
Confidence 33333322 233334444456666666666 777788877778888877776665555555544433211
Q ss_pred HHH------HHHhhccC-CcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCc
Q 014301 147 LIF------TAITSLNV-GTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNY 219 (427)
Q Consensus 147 ~l~------~~l~~~~~-~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (427)
.+- .++.+... .+...-...+++.+....+...+..+..++.+++. ++|.+... ++..+.+++.++-|
T Consensus 191 aL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~----~~e~~~~i-~~~yk~l~~vLklk 265 (510)
T KOG3574|consen 191 ALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESV----DEELELGI-HESYKLLRDVLKLK 265 (510)
T ss_pred EecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhh----hhhhhcCH-HHHHHHHHHHHcCc
Confidence 110 01111000 00111112233444444444444555544433331 11111111 34455677888888
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhcc--ccc--cchhHHHH
Q 014301 220 RGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGR--RFG--IRGRLWGL 295 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~~--~~~~~~~~ 295 (427)
.+..++......-..+.+-....+.-+.|. |++.++.+.+.. ..++.+++.+....|+.. |+. ..+.+..=
T Consensus 266 ~v~~la~i~lt~K~gf~a~da~t~LkLle~-Gv~ke~Lal~~v----~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R 340 (510)
T KOG3574|consen 266 SVRWLAGILLTGKLGFQAADALTSLKLLEH-GVPKEELALIAV----PLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYR 340 (510)
T ss_pred cHHHHHHHHHHHHHHhhhhhhccchHHHHc-CCChhHheeeee----ehhhHHHhhhhhheeecCCCCcchHHHHhhhHH
Confidence 888777777777777777777777777775 999988777653 333444444444444322 111 00011111
Q ss_pred HHHHHHHHHHHHHHhh-cc---c----hH-HHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHH
Q 014301 296 WAVQTAAGLLCVLLGR-VN---S----LW-GSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVV 365 (427)
Q Consensus 296 ~~~~~~~~~~~~~~~~-~~---~----~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~ 365 (427)
.....+..+....... .+ . .. ..+....+.+......+...++..+.+ +|...|+.+.+.|+..++|+--
T Consensus 341 ~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~w 420 (510)
T KOG3574|consen 341 LGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNW 420 (510)
T ss_pred HHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCc
Confidence 1111122222222211 11 1 11 122223333444444444555555554 7888999999999999988766
Q ss_pred HHHHH
Q 014301 366 TQMLL 370 (427)
Q Consensus 366 ~~~~~ 370 (427)
-..+.
T Consensus 421 p~tv~ 425 (510)
T KOG3574|consen 421 PGTVA 425 (510)
T ss_pred HHHHH
Confidence 55555
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-09 Score=71.67 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=75.0
Q ss_pred HhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHH
Q 014301 15 FFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFI 94 (427)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (427)
.++++.+.|.+|.+++|.++|.++.|++.+.+.+||.+|++...++.++..+++.+..+.+...+..+.+++.++.+.+.
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999887653
|
Note that many members are hypothetical proteins. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=88.31 Aligned_cols=157 Identities=18% Similarity=0.089 Sum_probs=118.5
Q ss_pred ccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchh---hHH------
Q 014301 21 IPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVS---SPQ------ 91 (427)
Q Consensus 21 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~------ 91 (427)
.......+-++-|+++.+..+..........+..+++..+.||+|||+.++.+..++.+..++..... +..
T Consensus 289 i~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y 368 (485)
T KOG0569|consen 289 IFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSY 368 (485)
T ss_pred eHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44445567778899999999999999999999999999999999999999999999888877766532 211
Q ss_pred HHHHHHHHHhhcccc-c-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHH
Q 014301 92 SFILVRFLVGFCLAN-F-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIV 169 (427)
Q Consensus 92 ~l~~~r~l~G~~~~~-~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~ 169 (427)
..+++.++..++.+. . |...-..+|.+|++.|+.+++.......+...+-...-|.+.+.+ |= +.|+.
T Consensus 369 ~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~---------g~-~~fil 438 (485)
T KOG0569|consen 369 LCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI---------GP-YVFIL 438 (485)
T ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cc-hhhHH
Confidence 224555555555553 3 555666699999999999999988888877776666666666532 32 77788
Q ss_pred HHHHHHHHHHHHHHHcCC
Q 014301 170 PSTFQALTAIMVLIYGQD 187 (427)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~ 187 (427)
..+++.+..+..++..||
T Consensus 439 F~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 439 FVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 888888877777766444
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.9e-08 Score=87.58 Aligned_cols=143 Identities=13% Similarity=0.144 Sum_probs=101.1
Q ss_pred ccccchhhhhhh---hcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 014301 19 FSIPPLIPIIRH---DLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFIL 95 (427)
Q Consensus 19 ~~~~~~~~~i~~---~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (427)
.......+.+.+ .+|.++.+.+...+.+..+..++.+..+++.||+|+||.+..+..+..++.++....++.... .
T Consensus 157 ~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~ 235 (310)
T TIGR01272 157 VSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-W 235 (310)
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-H
Confidence 334444454443 368999999999999999999999999999999999999988888877777666555554333 3
Q ss_pred HHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHH
Q 014301 96 VRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTF 173 (427)
Q Consensus 96 ~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~ 173 (427)
+-++.|++.+.. |...+...+..|+ +.+++.++. ....+|..+.|.+.+.+.+ ..|.+..|++..+.
T Consensus 236 ~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad---------~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 236 FVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLAD---------CLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHH---------hccchHHHHHHHHH
Confidence 555788888876 7777777777764 345566654 3444566555554444443 56888888754433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-07 Score=84.62 Aligned_cols=170 Identities=13% Similarity=0.091 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHH
Q 014301 224 LGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAG 303 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 303 (427)
..-..++.++.....+..+.+.+++.++.+..+++.+......+..+.++..+++.+|+|+|+ .+..++.+.+
T Consensus 17 ~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~-------gi~lgL~l~a 89 (422)
T COG0738 17 LLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKA-------GIVLGLLLYA 89 (422)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHH-------HHHHHHHHHH
Confidence 333444555666666677778888999999999999999999999999999999999999998 5666666666
Q ss_pred HHHHHHh---hccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH--hhcc---
Q 014301 304 LLCVLLG---RVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL--FSGS--- 374 (427)
Q Consensus 304 ~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~~~--- 374 (427)
+++.++. ...++..++..+++.+.|.+...+...+++... +++....-+.+.+.+..+|..++|.+. ....
T Consensus 90 vg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~ 169 (422)
T COG0738 90 VGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA 169 (422)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence 6666654 445777888888999999999999998888866 555566678889999999999999998 2221
Q ss_pred ---------------cccchhHHHHHHHHHHHHHHHHHhhc
Q 014301 375 ---------------KFSKQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 375 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
...++..+...+...++..+.....+
T Consensus 170 ~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k 210 (422)
T COG0738 170 LTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSK 210 (422)
T ss_pred hccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 12355566666665555555444433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-08 Score=94.01 Aligned_cols=147 Identities=13% Similarity=0.180 Sum_probs=122.6
Q ss_pred hccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHH
Q 014301 248 DRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN--SLWGSVLVMCVF 325 (427)
Q Consensus 248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 325 (427)
+++.+++.+-+++.+....+.+++.+.++++.||+|.|+ ....+.++..+.-++.+... +.+.+++.=++.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~-------v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lq 138 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARR-------VFFISGLISALLTLLTPLAASIGFYLLLVLRFLQ 138 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchH-------HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHh
Confidence 467899999999999999999999999999999999997 66666666666666555443 445667778899
Q ss_pred HHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH-hhccc-ccchhHHHHHHHHHHHHHHHHHhhcc
Q 014301 326 SVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSK-FSKQTSISVMGLMMIVCTLPVSLIYF 401 (427)
Q Consensus 326 g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (427)
|++.+..+|....+.. -.|+++|++..++.....++|.+++-++. .+.+. .||+..|++.+++.++..++......
T Consensus 139 Gl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 139 GLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999988888 46999999999999999999999888777 55555 99999999999988888777666554
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-07 Score=89.49 Aligned_cols=149 Identities=16% Similarity=0.217 Sum_probs=118.0
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIV 81 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (427)
|.+.......++..+.........+.+.++.--++...+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~ 304 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF 304 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence 44555666677777777777777777766643344778888999999999999999999999999999999999999999
Q ss_pred HHHhchh--hHHHHHHHHHHHhhccccc-cchHHHHHcccCcc-------ccccchhhhhhhhhhhHHHHHHHHHHHHH
Q 014301 82 LSASLVS--SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGC-------VVGLANGVSAGWANMGAGVSQLLMPLIFT 150 (427)
Q Consensus 82 ~~~~~~~--~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 150 (427)
++..+.+ |.+.+++.-++.|++.+.. ....++++|..+.+ +.|...+..+....+|..+++.+.+.+..
T Consensus 305 ~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 305 LLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred HHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 9988886 9999999999999999987 77778888887642 34666777777777777766666555544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.4e-08 Score=93.61 Aligned_cols=142 Identities=9% Similarity=-0.014 Sum_probs=99.8
Q ss_pred HHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc--
Q 014301 9 LSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL-- 86 (427)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-- 86 (427)
...++............+.+.++..-++...+++.+...++..++.+++++++||+|+|+.+..+..+..++.+....
T Consensus 238 ~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~ 317 (473)
T PRK10429 238 GMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG 317 (473)
T ss_pred HHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444455555555554445666777788777889999999999999999999999888876655554432
Q ss_pred ---hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCc-------cccccchhhhhhhhhhhHHHHHHHHHHHHH
Q 014301 87 ---VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSG-------CVVGLANGVSAGWANMGAGVSQLLMPLIFT 150 (427)
Q Consensus 87 ---~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 150 (427)
.++.+.+++.-++.|++.+.. ....++++|..+. ++.|..++.......+|..+++.+.+.+.+
T Consensus 318 ~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 318 LAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888889988876 7777788888652 223457777777777888777777666554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=90.91 Aligned_cols=143 Identities=8% Similarity=-0.056 Sum_probs=95.7
Q ss_pred HHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc--h
Q 014301 10 SLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL--V 87 (427)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~ 87 (427)
..++........+...+.+.++.--+++..+.+.....+...++.+++++++||+|+|+.+..+..+.++......+ .
T Consensus 237 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~ 316 (444)
T PRK09669 237 FNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP 316 (444)
T ss_pred HHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33333333333334444444433223344455666777888889999999999999999999888766543332222 3
Q ss_pred hhHHHHHHHHHHHhhccccc-cchHHHHHcccCcc-------ccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Q 014301 88 SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGC-------VVGLANGVSAGWANMGAGVSQLLMPLIFTAI 152 (427)
Q Consensus 88 ~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l 152 (427)
++.+.+++..++.|++.+.. +...++++|..+.+ +.|...+..+....+|..+|+.+++.+.+..
T Consensus 317 ~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 317 SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57777888889999999976 77778888887522 2345567777777888888887777666543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=80.64 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=96.2
Q ss_pred hhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHH-HHHHHHHhchhhHHHHHHHHHHHhhccc
Q 014301 27 IIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLIT-APIVLSASLVSSPQSFILVRFLVGFCLA 105 (427)
Q Consensus 27 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 105 (427)
..+|.+|+|+.+.+.+.+.-..-.++.+++.|.++||+|++...+.+..+. .++-.+..+ +++.=..+..+.|+..+
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 468899999999999999988889999999999999999999887776663 344444333 23333556778888877
Q ss_pred cc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHH
Q 014301 106 NF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFT 150 (427)
Q Consensus 106 ~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 150 (427)
.. -..-..++...|+++.|.+.+..+...++|..+.+++++.+.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence 65 3345567788888999999999999999999888877776654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.8e-08 Score=91.90 Aligned_cols=147 Identities=15% Similarity=0.224 Sum_probs=119.2
Q ss_pred hhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 014301 247 YDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFS 326 (427)
Q Consensus 247 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 326 (427)
.++.++...+.+...+.+.++.+++.++++.+.||++..+ .+....++..+..++....++.+.+++.-++.|
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~-------~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llG 145 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK-------GLSVSGILWGLFGFLTAAVHSFPGLIALRFLLG 145 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHH-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3566788889999999999999999999999999998554 444444444444434444678899999999999
Q ss_pred HHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHHhh-------cccccchhHHHHHHHHHHHHHHHHHh
Q 014301 327 VFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLLFS-------GSKFSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 327 ~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
+..+..+|....+.. -..+++||..+|+.+....+|+++|+.+... ....+|++.|++-+++.+...++.++
T Consensus 146 l~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 146 LFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred HHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEE
Confidence 999999999988887 4688899999999999999999999999822 45679999999999888877766554
Q ss_pred hc
Q 014301 399 IY 400 (427)
Q Consensus 399 ~~ 400 (427)
..
T Consensus 226 ~l 227 (495)
T KOG2533|consen 226 FL 227 (495)
T ss_pred Ee
Confidence 33
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-06 Score=78.56 Aligned_cols=176 Identities=16% Similarity=0.134 Sum_probs=139.5
Q ss_pred HHHHHhHhhhccccchhhhh-hhhcCCCcchhhHHHHHHHHHHHHhhcccccccc-ccCCchHHHHHHHHHHHHHHHH--
Q 014301 9 LSLFSCFFSTFSIPPLIPII-RHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCD-LLGPRVASATLSLITAPIVLSA-- 84 (427)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~-- 84 (427)
...++..++.++--+++.++ .|-||.|..|..-+......|..++....|++.. |.++|+....++....++..+.
T Consensus 215 ~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 215 VFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred HHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555 4568999999999999999999999999998877 7888888888888877766654
Q ss_pred -hchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccC-Cccc
Q 014301 85 -SLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNV-GTHT 161 (427)
Q Consensus 85 -~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~-~~~~ 161 (427)
+...+.+.+...-++.|++.|.+ ....+.+.|...+++.|..+|.+.....+...+|.++++.+-+....... .+..
T Consensus 295 a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~ 374 (403)
T PF03209_consen 295 AGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPAL 374 (403)
T ss_pred HHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcch
Confidence 44568899999999999999988 77888889999999999999999999999998888888888776655433 3566
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 014301 162 AWRLAFIVPSTFQALTAIMVLIY 184 (427)
Q Consensus 162 ~wr~~f~~~~~~~~~~~~~~~~~ 184 (427)
+|-.+|.+.++..++...+...+
T Consensus 375 aY~~VF~lEa~ll~~a~~ll~~l 397 (403)
T PF03209_consen 375 AYGVVFALEAVLLLAALVLLGRL 397 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999888777766555444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.1e-06 Score=75.93 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=117.8
Q ss_pred hhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhcccccccccc-CCchHHHHHHHHHHHHHHHHhchhhHHHHH
Q 014301 16 FSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLL-GPRVASATLSLITAPIVLSASLVSSPQSFI 94 (427)
Q Consensus 16 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (427)
...++...-+|.+..|-|+|+.+.|++.+...+.....++....+.+|. .+|+..+...+++.++...+.+.+.-..+.
T Consensus 222 ~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~l 301 (395)
T COG2807 222 LLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPIL 301 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3355567778999999999999999999999999999999999999965 667777777777888888877776533333
Q ss_pred HHHHHHhhccccc-cchHHHHHcccCc-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHH
Q 014301 95 LVRFLVGFCLANF-VANQFWMSSMFSG-CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPST 172 (427)
Q Consensus 95 ~~r~l~G~~~~~~-~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~ 172 (427)
- -++.|+|.|.. +.+...+.+..+. ++-++-.++.+ .+|..++ ..+|++.+++.|. ..+|+......+.
T Consensus 302 w-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQ---g~GYllA-a~GP~l~G~lhDa----~gsw~~~~~~l~~ 372 (395)
T COG2807 302 W-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQ---GVGYLLA-AFGPWLFGFLHDA----TGSWSAPLVLLAL 372 (395)
T ss_pred H-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhh---hhhHHHH-hhhhhhHhHHHHh----cCChHHHHHHHHH
Confidence 3 59999998865 8788888666654 34444445444 4454444 2456666665543 5699999998888
Q ss_pred HHHHHHHHHHHHc
Q 014301 173 FQALTAIMVLIYG 185 (427)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (427)
..+++.+.-+..-
T Consensus 373 ~~i~m~i~Gl~a~ 385 (395)
T COG2807 373 ATLLMLIFGLRAG 385 (395)
T ss_pred HHHHHHHHHhhcc
Confidence 7777766665553
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00012 Score=69.38 Aligned_cols=252 Identities=10% Similarity=-0.017 Sum_probs=140.1
Q ss_pred CcchhhHHHHHHHH-HHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch---------h----------------
Q 014301 35 TDTDVGTAGMASFL-GSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV---------S---------------- 88 (427)
Q Consensus 35 s~~~~g~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~---------------- 88 (427)
+++.+..+-....+ ...+......+++||++|.+++-.....+.....+.++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45555666554444 444557778999999999999887777666655555542 1
Q ss_pred ------hHHHHHHHHHHHhhccccc-c-chHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcc
Q 014301 89 ------SPQSFILVRFLVGFCLANF-V-ANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTH 160 (427)
Q Consensus 89 ------~~~~l~~~r~l~G~~~~~~-~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~ 160 (427)
+.|.+.+..+..-+-.... . .--.+..|.++.+|-.|..+++..+.++|.++++.+...+.....+....+.
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~ 215 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV 215 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 1222222223333322222 1 2345678999999999999999888888888777766666652222111123
Q ss_pred cchhHHHHH----HHHHHHHHHHHHHHHcCCCCCCCc--ccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHH
Q 014301 161 TAWRLAFIV----PSTFQALTAIMVLIYGQDLPSGNY--KEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGV 234 (427)
Q Consensus 161 ~~wr~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (427)
..|...+.. ..+.+.+......++.++..++++ ++.+++.+++++.+..+.++.++|+|....+++...+....
T Consensus 216 ~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~ 295 (491)
T PF03219_consen 216 DAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGIS 295 (491)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 456644322 222222222222333222111111 11111122222266778889999999888777776665555
Q ss_pred HhhhhhhhcchhhhccCCcHHH---HHHHHHHHHHhhhcccccchhhhhhhcccc
Q 014301 235 ELTTDNIIAQYFYDRFGVNLQV---AGTIAASFGMANLFSRPMGGVISDRMGRRF 286 (427)
Q Consensus 235 ~~~~~~~~~~~l~~~~g~s~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 286 (427)
........-..+.+.+.-+.+. .|......++..++..++++.+.+|+|-+.
T Consensus 296 inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~ 350 (491)
T PF03219_consen 296 INLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRT 350 (491)
T ss_pred HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5544444444444443322222 233445556666666677788888887764
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-07 Score=86.74 Aligned_cols=150 Identities=15% Similarity=0.090 Sum_probs=129.4
Q ss_pred hhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccc
Q 014301 26 PIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLA 105 (427)
Q Consensus 26 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 105 (427)
=.-.||.+..+...|........+-.+.-++.+++.+|+|+-+++..++....+=.+..+..+|.|+.+-..+++|+..+
T Consensus 395 fWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~a 474 (618)
T KOG3762|consen 395 FWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHA 474 (618)
T ss_pred HHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHH
Confidence 33467788788888888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred cc-cchHHHHHcccCccccccchhhhh-hhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHH
Q 014301 106 NF-VANQFWMSSMFSGCVVGLANGVSA-GWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLI 183 (427)
Q Consensus 106 ~~-~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 183 (427)
.. .+..+++++..||+.|..+.++.+ ....+|-.+|.++|+.+.. .++-|..|.+.++.+++.++....
T Consensus 475 liWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~---------~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 475 LIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE---------RFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe---------eehhHHHHHHHHHHHHHHHHHHHH
Confidence 87 889999999999999999988875 4567788888888887766 678899999998888877666544
Q ss_pred H
Q 014301 184 Y 184 (427)
Q Consensus 184 ~ 184 (427)
+
T Consensus 546 i 546 (618)
T KOG3762|consen 546 I 546 (618)
T ss_pred h
Confidence 3
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.2e-06 Score=72.55 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=81.3
Q ss_pred cchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc-------cch
Q 014301 243 AQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV-------NSL 315 (427)
Q Consensus 243 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 315 (427)
...+++++|+|.++...+...-.++..+| ++.|.+.|+.|.+. .+.++.....++....... .+.
T Consensus 25 S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~-------~l~iG~~~~~~GY~~~~l~~~~~i~~~~~ 96 (250)
T PF06813_consen 25 SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWV-------VLLIGAVLGFVGYGLLWLAVSGRIPSLPV 96 (250)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHHHHHhCccCccch
Confidence 33466788999999999998888888765 88999999999885 4555555555554443321 134
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 316 WGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
|...+..++.+.+.....+.......+..|++||++.|+.-....+++.+-..+.
T Consensus 97 ~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~ 151 (250)
T PF06813_consen 97 WLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIY 151 (250)
T ss_pred HHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHH
Confidence 4444444444444333333333322233467899999999999999999888877
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-07 Score=88.32 Aligned_cols=138 Identities=15% Similarity=0.121 Sum_probs=116.7
Q ss_pred hccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 014301 248 DRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSV 327 (427)
Q Consensus 248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 327 (427)
+..+.+.....+..+++.++..+|.++.|.++||+|||+ ....+..+..+.-....+.++.+...+.-++.|+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~-------~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKP-------VLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF 183 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHH-------HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 445677788888899999999999999999999999998 7778888888888888889999999999999999
Q ss_pred Hhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHH
Q 014301 328 FVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLP 395 (427)
Q Consensus 328 ~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (427)
+.+........+..|. ++++|+.+..+ ......++..+|... +... +|++.++...+...+..+.
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999975 89999999999 777777777777776 4444 8888888877777666655
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-06 Score=78.76 Aligned_cols=148 Identities=17% Similarity=0.161 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHH
Q 014301 222 WILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTA 301 (427)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 301 (427)
..+....+.....+.....++..|..+..|+++..+|.+..+.-+..++.-++.|.+.||..+|++.++ -+.+......
T Consensus 15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfR-P~lL~g~ip~ 93 (467)
T COG2211 15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFR-PWLLWGAIPF 93 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccccccc-HHHHHHhHHH
Confidence 334455555566677777889999999999999999999999999999999999999998776554332 2233222222
Q ss_pred HHHHHHHHhhc-----cchHHHHHHHHHHHHHhhhhhhhhhhccccc--CcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 302 AGLLCVLLGRV-----NSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV--SKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 302 ~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+.+..+..... .+.....+...++++++.....+..++.+++ ++++|.+..+.-..+..+|..+...+.
T Consensus 94 ~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~ 169 (467)
T COG2211 94 AIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLF 169 (467)
T ss_pred HHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222221 2345566777888999999888888888876 678899988888888877765554444
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=82.18 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHH
Q 014301 226 LTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLL 305 (427)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (427)
+.-............++..|+.+..|+++..+|.+..+.-+...+.-++.|+++||...|.+.+ |- .+..+....++.
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~-rp-~il~g~i~~~i~ 93 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKF-RP-WVLFGALPFGIV 93 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCc-ch-hHhHHHHHHHHH
Confidence 3333344455556678888888999999999999999999999999999999999864443222 12 222332333333
Q ss_pred HHHHhhcc--c----hHHHHHHHHHHHHHhhhhhhhhhhccccc--CcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 306 CVLLGRVN--S----LWGSVLVMCVFSVFVQAAGGLTFGVVPFV--SKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 306 ~~~~~~~~--~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
..++...+ + .....+..+++..++.....+..++.+|+ ++++|.+.++.-...+.+|..+++.+.
T Consensus 94 ~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 94 CVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222 1 23344555667788888888888888876 577899999998888888887776664
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-08 Score=96.96 Aligned_cols=136 Identities=11% Similarity=0.134 Sum_probs=106.4
Q ss_pred cHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHh
Q 014301 253 NLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN---SLWGSVLVMCVFSVFV 329 (427)
Q Consensus 253 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~ 329 (427)
+..+.+...+...++..+|.++.|+++||+|||+ ....+..+..++..+....+ +.+.+.++-++.|++.
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKP-------ALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGI 116 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccc-------ccccccccccccccccccccccccccccccccccccccc
Confidence 3456778888899999999999999999999998 56666666666666666776 7888888889999999
Q ss_pred hhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcc---cccchhHHHHHHHHHHHHHHH
Q 014301 330 QAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGS---KFSKQTSISVMGLMMIVCTLP 395 (427)
Q Consensus 330 ~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~ 395 (427)
+...+....+..|. |++.||....+.+....+|..++..+. ...+ ...|+..+....+..++..+.
T Consensus 117 g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~ 187 (451)
T PF00083_consen 117 GGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL 187 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999986 788899999999998888888887776 2222 234777666666555444433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00019 Score=66.43 Aligned_cols=263 Identities=9% Similarity=-0.006 Sum_probs=145.5
Q ss_pred chhhhhhhhcCC---CcchhhHHHHHHHH-HHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch---------hh
Q 014301 23 PLIPIIRHDLNL---TDTDVGTAGMASFL-GSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV---------SS 89 (427)
Q Consensus 23 ~~~~~i~~~~~~---s~~~~g~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~~ 89 (427)
..+-.++|.+.. ++..+.++-+...+ +..+..++.++++++..|.+++-..+..+....+++++. ++
T Consensus 44 ~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~ 123 (509)
T COG3202 44 NLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPD 123 (509)
T ss_pred HHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 344555666543 46667787777777 777888999999999999999988888877777777663 11
Q ss_pred -----------------------HHHHHHHHHHHhhccccc--cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHH
Q 014301 90 -----------------------PQSFILVRFLVGFCLANF--VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLL 144 (427)
Q Consensus 90 -----------------------~~~l~~~r~l~G~~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~ 144 (427)
.|...+..+..-+=.+.. ..-.....|.+..+|-.|..++++...+++..++..+
T Consensus 124 ~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~ 203 (509)
T COG3202 124 PEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEV 203 (509)
T ss_pred HHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 122222222222222221 1222345777888888999999988777777666555
Q ss_pred HHHHHHHHhhc-cCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCc---c-cccccchhhhhhhhHHHHHhhhcCc
Q 014301 145 MPLIFTAITSL-NVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNY---K-EFKKTKTESREEKFVHVLFNGLKNY 219 (427)
Q Consensus 145 ~~~l~~~l~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (427)
...+....... ....+..-+..+.+.+..++++..+..+.-+...+++. + ..++++++.+ -+..+.++.+.|+|
T Consensus 204 ~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~k-~~~~~s~k~i~~Sk 282 (509)
T COG3202 204 TSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLK-LGLIESFKMILRSK 282 (509)
T ss_pred HHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhccccccccc-CcHHHHHHHHHhhh
Confidence 54444311000 00001124445555555555555555554443333322 1 1112222222 56678888888988
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHH---HHHHHHHHHh-hhcccccchhhhhhhcccc
Q 014301 220 RGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVA---GTIAASFGMA-NLFSRPMGGVISDRMGRRF 286 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~---~~~~~~~~~~-~~~~~~~~g~l~d~~~~~~ 286 (427)
-.+.+++...+...+...+....-.-..+.+-.+.+.. +.+....++. .++...+++.+.+|.|-..
T Consensus 283 yL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~ 353 (509)
T COG3202 283 YLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFT 353 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHH
Confidence 88777776666555444443333222222222222222 3333344444 4445567777887777653
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-06 Score=79.43 Aligned_cols=180 Identities=12% Similarity=0.049 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhhh-ccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhcc-ccccchhHHHHHHH
Q 014301 221 GWILGLTYGFCFGVELTTDNIIAQYFYD-RFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGR-RFGIRGRLWGLWAV 298 (427)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~ 298 (427)
.+...+..++.......+..-.-+|+++ +.+-+.+..|+..+...++..++++..|++..|.+. |+ .+....+.
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~----Pli~s~ii 111 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKK----PLIVSFLI 111 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCccc----CHHHHHHH
Confidence 3444555555555555555555566655 247788889999999999999999999999999884 33 22333333
Q ss_pred HHHHHHHHHHHhhcc--chHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH----h
Q 014301 299 QTAAGLLCVLLGRVN--SLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL----F 371 (427)
Q Consensus 299 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~----~ 371 (427)
.+++-+....+...+ ..+...++-++.|++.+.... .-.+++ ...+++|.++++..+....+|..+||.+. .
T Consensus 112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 333333332333333 455666777777777654433 334444 33566777777777776677777777665 1
Q ss_pred hccc----------ccchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014301 372 SGSK----------FSKQTSISVMGLMMIVCTLPVSLIYFPQWG 405 (427)
Q Consensus 372 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (427)
+.+. ..|..+-+++++..++..+......++.++
T Consensus 191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 1111 135566667777777777666665554443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0001 Score=68.28 Aligned_cols=355 Identities=12% Similarity=0.032 Sum_probs=173.8
Q ss_pred HHHHHHHhHhhhccccchhhhhhhh--cCCCcchhhHHHHH---HHHHHHHhhccccccccccCCchHHHHHH-HHHHHH
Q 014301 7 AWLSLFSCFFSTFSIPPLIPIIRHD--LNLTDTDVGTAGMA---SFLGSIFSRLAMGPVCDLLGPRVASATLS-LITAPI 80 (427)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~g~~~s~---~~l~~~~~~~~~g~l~dr~Grr~~~~~~~-~~~~~~ 80 (427)
..+.+++.+.-.+......|.+.++ -+.|.+|.+...-+ |.+=..-+.++=.....|+||||..++=. .+.++.
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~ 84 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGIL 84 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHH
Confidence 3444555555555555677888777 67888887654321 12222222233334455899999865532 223333
Q ss_pred HHHHhchh----------------------h--HHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhh
Q 014301 81 VLSASLVS----------------------S--PQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWAN 135 (427)
Q Consensus 81 ~~~~~~~~----------------------~--~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 135 (427)
.+..+..- + ...+...-++.=+-.+.. .+...+.-....+++++.+..-. .
T Consensus 85 m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcq----t 160 (544)
T PF13000_consen 85 MLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQ----T 160 (544)
T ss_pred HHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHH----H
Confidence 33322211 1 112222222333333444 66666666666778877766544 4
Q ss_pred hhHHHHHHHHHHHHHHHhhc--------cCCcc---cchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcc------c---
Q 014301 136 MGAGVSQLLMPLIFTAITSL--------NVGTH---TAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYK------E--- 195 (427)
Q Consensus 136 ~G~~~g~~~~~~l~~~l~~~--------~~~~~---~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--- 195 (427)
+|.-+|..++..+.-.+.+. ..+.. ..-..-..+.+...++..+...++.+|.|+.+.. +
T Consensus 161 vG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~ 240 (544)
T PF13000_consen 161 VGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSD 240 (544)
T ss_pred hHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccc
Confidence 55544444444333322220 00111 1112223344555555555666666655422110 0
Q ss_pred -ccc------cch----hhhhhhhH---HHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHH
Q 014301 196 -FKK------TKT----ESREEKFV---HVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIA 261 (427)
Q Consensus 196 -~~~------~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~ 261 (427)
.++ +++ +++..+.+ +.+.+.+|.|++..+.+.....-..+..-......-+.|. |++.++.+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEk-G~~KE~LAl~~ 319 (544)
T PF13000_consen 241 GKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEK-GLSKEDLALLV 319 (544)
T ss_pred ccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHc-CCCHHHhHHHH
Confidence 000 000 01101222 3345667888888888887777777666666666667665 99999877765
Q ss_pred HHHHHhhhcccccchhhhhhhccccccc----------------hh--------HHHHHHHH---H-HHHHHHHHHhhcc
Q 014301 262 ASFGMANLFSRPMGGVISDRMGRRFGIR----------------GR--------LWGLWAVQ---T-AAGLLCVLLGRVN 313 (427)
Q Consensus 262 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~----------------~~--------~~~~~~~~---~-~~~~~~~~~~~~~ 313 (427)
.+ ..+.+++.|+.+.|+.+-+.+. .+ +..-..+. + .+.+........+
T Consensus 320 li----~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP 395 (544)
T PF13000_consen 320 LI----DFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFP 395 (544)
T ss_pred HH----hhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCC
Confidence 43 4444455555555543322210 00 01111111 1 1111111111111
Q ss_pred -----c--hH-HHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 314 -----S--LW-GSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 314 -----~--~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+ +. .+++...+-.+.....+...++.-+.+ +|..-|+.+.+.|+..++|+---..+.
T Consensus 396 ~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~v 461 (544)
T PF13000_consen 396 SDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFV 461 (544)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHH
Confidence 1 11 222223333344444455555555544 788899999999999999987666554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-05 Score=67.14 Aligned_cols=232 Identities=12% Similarity=0.092 Sum_probs=113.3
Q ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHH-HHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccc
Q 014301 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFT-AITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKT 199 (427)
Q Consensus 121 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (427)
|+|+........++++|.++.-+ |++.. -..+ ....+|++.+.+.+++.++.+++..++-++.....++ +++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~i--pF~~~~~~~~---~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~--~k~ 74 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNI--PFLISSSVVI---ALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK--EKQ 74 (267)
T ss_pred CccceeeeeccccchhhHHHHHh--hHHhcchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc--ccc
Confidence 56777777777777888766533 33322 1111 1134799999999988887777666664442211111 111
Q ss_pred chhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcH-------------HHHHHHHHHHHH
Q 014301 200 KTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNL-------------QVAGTIAASFGM 266 (427)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~-------------~~~~~~~~~~~~ 266 (427)
++++.+.+..+..++.+|++..|...+.+....... ...+.+.+..+....++ ............
T Consensus 75 ~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~--V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~ 152 (267)
T PF07672_consen 75 EKENSTLSKKPSYKSILKEKETWKWILIYGIWLVVV--VFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILFVA 152 (267)
T ss_pred ccccccccccchHHHHHccchHHHHHHHHHHHheeE--EEeccchhHhHhhhcCcccccccccccccchhhHHHHHHHHH
Confidence 111100222356678899999998887776533211 11112222221111111 112333444445
Q ss_pred hhhcccccchhhhhhhccccccchhHHHHH--HHHHHHHHHHHHH-hhcc----chHHHHHHHHHHHHHhhhhhhhhhhc
Q 014301 267 ANLFSRPMGGVISDRMGRRFGIRGRLWGLW--AVQTAAGLLCVLL-GRVN----SLWGSVLVMCVFSVFVQAAGGLTFGV 339 (427)
Q Consensus 267 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~ 339 (427)
+..+|.+..|.+.+..-+|++ ..... .+.....+..++. .... +.....+..++.|++.-..++....+
T Consensus 153 g~~~G~~~ig~~nkt~~kRk~----fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL~l 228 (267)
T PF07672_consen 153 GYFLGPFTIGLWNKTNYKRKP----FIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVILNL 228 (267)
T ss_pred HHhhhceeeccchhhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHhcC
Confidence 556777777887775444432 11111 1122222222221 2222 23345555556666655556655555
Q ss_pred cccc---CcCcceeeeehhcchhhhhhHH
Q 014301 340 VPFV---SKRSLGVISGMTGSGGTVGAVV 365 (427)
Q Consensus 340 ~~~~---~~~~~g~~~g~~~~~~~~g~~~ 365 (427)
..|. .|+..|...|+.-.++++.-.+
T Consensus 229 PhEyK~~~pk~ig~~Fg~iWGfGY~~yTi 257 (267)
T PF07672_consen 229 PHEYKGYNPKKIGIQFGLIWGFGYIFYTI 257 (267)
T ss_pred hhhhcCCCcceehhHHHHHHHHHHHHHHH
Confidence 5555 4555565555555555444433
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-06 Score=83.70 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhh
Q 014301 256 VAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGL 335 (427)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 335 (427)
+.+++.+...+++.++.++.|+++|++|||+ .+..+.+...++.++.....+...+.++-++.|++.+.....
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~-------~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~ 162 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKK-------TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVL 162 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhc
Confidence 4489999999999999999999999999997 666677777777777777789999999999999999999988
Q ss_pred hhhccccc-CcCcceeeeehhcchhhhhhHHHHHHHhhccc--ccchhHHHHHHHHHHHHHHH
Q 014301 336 TFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLLFSGSK--FSKQTSISVMGLMMIVCTLP 395 (427)
Q Consensus 336 ~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 395 (427)
...+.+|+ |++.||...+..+....+|..++-.+....+. .+|+..+....+.+++..+.
T Consensus 163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 163 APVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG 225 (513)
T ss_pred chhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 88889987 66689999999988888888887444332222 47887776666666655555
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.3e-06 Score=60.10 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=61.1
Q ss_pred HHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHH
Q 014301 8 WLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLIT 77 (427)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 77 (427)
-..+++.+.......|.+|...++.|+|+.|+|.+.++..+...++++++|.++||+++++..+....++
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3455666667777888899989999999999999999999999999999999999999999988776654
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.5e-05 Score=68.04 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=98.0
Q ss_pred hccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 014301 248 DRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSV 327 (427)
Q Consensus 248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 327 (427)
+.+|++..+.+.++..-...+.+...+.|.++||+|||+ ......++..+.++ .-..++.+.++++-++.|+
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~-------~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGi 133 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK-------ACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGI 133 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH-------HHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHH
Confidence 568999999999999988899999999999999999997 44444444444443 4455788888899899999
Q ss_pred Hhhhhhhhhhhccc-cc-----CcCcceeeeehhcch-hhhhhHHHHHHH-hhccc--ccchhHHHHHHHHHHHHHHHHH
Q 014301 328 FVQAAGGLTFGVVP-FV-----SKRSLGVISGMTGSG-GTVGAVVTQMLL-FSGSK--FSKQTSISVMGLMMIVCTLPVS 397 (427)
Q Consensus 328 ~~~~~~~~~~~~~~-~~-----~~~~~g~~~g~~~~~-~~~g~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 397 (427)
+....+...-++.. |. |++..+...+...+. +.+-.+.++.+. ...+. .+...+|.....+.+++.++..
T Consensus 134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL 213 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence 99988888765443 32 444444444444322 233344444444 33333 3457778777777777776654
Q ss_pred hhc
Q 014301 398 LIY 400 (427)
Q Consensus 398 ~~~ 400 (427)
..+
T Consensus 214 ~~W 216 (354)
T PF05631_consen 214 KTW 216 (354)
T ss_pred hcc
Confidence 443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-05 Score=63.15 Aligned_cols=105 Identities=17% Similarity=0.111 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccC
Q 014301 41 TAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFS 119 (427)
Q Consensus 41 ~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~ 119 (427)
.-.++......+..++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-.+.|++.+.. .+...++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 34566667777888888999999999999999999988665553 4678889999999999999987 666788899999
Q ss_pred ccccccchhhhhhhhhhhHHHHHHHHH
Q 014301 120 GCVVGLANGVSAGWANMGAGVSQLLMP 146 (427)
Q Consensus 120 ~~~r~~~~~~~~~~~~~G~~~g~~~~~ 146 (427)
+++|++-.+++-...+.+..+|.++.-
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887777766665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.1e-06 Score=77.06 Aligned_cols=177 Identities=13% Similarity=0.072 Sum_probs=117.6
Q ss_pred HHHHHhHhhhccccchhhhhhhhcCCCcchhhH--------HHH-HHHHHHHHhhccccccccccCCchHHHHHHHHHHH
Q 014301 9 LSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGT--------AGM-ASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAP 79 (427)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~--------~~s-~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~ 79 (427)
...|+.-+..+..+.....+.+++++.+.+... ... +...++..+-.+...++|++|||++.+.+.+++++
T Consensus 311 ~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i 390 (538)
T KOG0252|consen 311 GTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTI 390 (538)
T ss_pred HHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHH
Confidence 334444455566777778888888776655444 111 12233444777888999999999999999999999
Q ss_pred HHHHHhchhhH----HHHHHHHHHHhhccccccchHH--HHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 014301 80 IVLSASLVSSP----QSFILVRFLVGFCLANFVANQF--WMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAIT 153 (427)
Q Consensus 80 ~~~~~~~~~~~----~~l~~~r~l~G~~~~~~~~~~~--~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~ 153 (427)
..+..+...|. ..+++...+..+..-.-|.... +-+|.+|.+-|+...|+..+..-.|+++|...-. .+.
T Consensus 391 ~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~----~~t 466 (538)
T KOG0252|consen 391 FFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL----YLT 466 (538)
T ss_pred HHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh----Hhh
Confidence 99998887661 1222222222222221122222 2389999999999999998888788766654433 333
Q ss_pred hccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014301 154 SLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLP 189 (427)
Q Consensus 154 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~ 189 (427)
+.+.++..+-|.++++.+...++..+..++++|+..
T Consensus 467 ~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 467 DHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred hccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 323334568899999999998888888888875543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.4e-05 Score=69.38 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=121.1
Q ss_pred HHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 014301 234 VELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN 313 (427)
Q Consensus 234 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (427)
........+..-+.+..|.+..+..++......+..+++...|..+|++|||+ ..........+.-......+
T Consensus 92 m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~-------~f~~T~l~t~v~~~is~~sp 164 (528)
T KOG0253|consen 92 MEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRK-------GFNLTFLVTGVFGVISGASP 164 (528)
T ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcch-------hhhhhHHHHHHHHHhhcCCC
Confidence 44445556666677778888889999999999999999999999999999998 55555666666666667778
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHH
Q 014301 314 SLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIV 391 (427)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 391 (427)
+...+.+.-.+.+++.+. .|...++-.|. |..+|+.-+-+. ....+|.+....+. ......||++-+...+....+
T Consensus 165 nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~ 242 (528)
T KOG0253|consen 165 NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMF 242 (528)
T ss_pred CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH
Confidence 888888888889999888 66666666654 777787766555 77788998888888 777778999888877766665
Q ss_pred HHHHHHhhc
Q 014301 392 CTLPVSLIY 400 (427)
Q Consensus 392 ~~~~~~~~~ 400 (427)
.+....+..
T Consensus 243 ~a~f~~w~~ 251 (528)
T KOG0253|consen 243 AARFLVWVY 251 (528)
T ss_pred HHHHHhhcc
Confidence 555555443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0013 Score=64.03 Aligned_cols=338 Identities=14% Similarity=0.064 Sum_probs=190.9
Q ss_pred ccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhcccccccccc-CCchHHHHHHHHHHHHHHHHhchhh----------
Q 014301 21 IPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLL-GPRVASATLSLITAPIVLSASLVSS---------- 89 (427)
Q Consensus 21 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~---------- 89 (427)
...++..+.+++|.+...+.-..+.+.-......+.++.++|-| ||-+++.++.++..++..+...+..
T Consensus 57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 46677788889999888777788888888888889999999975 9999999999998777655443211
Q ss_pred ---------------HHHHHHHHHHHhhccccc-cchHHHHHcccC---cccc---ccchhhhhhhhhhhHHHHHHHHHH
Q 014301 90 ---------------PQSFILVRFLVGFCLANF-VANQFWMSSMFS---GCVV---GLANGVSAGWANMGAGVSQLLMPL 147 (427)
Q Consensus 90 ---------------~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~---~~~r---~~~~~~~~~~~~~G~~~g~~~~~~ 147 (427)
...+..+.-+..+|.|+. +...++=+|-++ ++++ ...+.++....+.|..++. .
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~----t 212 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQ----T 212 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHH----H
Confidence 235667777888899988 888888899988 3222 2455556555555554443 3
Q ss_pred HHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcC----CCCCCC----------------------c-cc-----
Q 014301 148 IFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQ----DLPSGN----------------------Y-KE----- 195 (427)
Q Consensus 148 l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~----~~~~~~----------------------~-~~----- 195 (427)
+..+..+ ..+|.+.|.+..+...+..++.+...+ +.|... + ++
T Consensus 213 ~~vyiq~-----~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~~~~~ 287 (571)
T KOG1237|consen 213 VLVYIQD-----NVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEELYYDC 287 (571)
T ss_pred HHHhhhh-----cccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchhccccc
Confidence 3333333 679999999888776665554432211 111100 0 00
Q ss_pred ---c--cc-cc-----h----hh-------h-------hhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchh
Q 014301 196 ---F--KK-TK-----T----ES-------R-------EEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYF 246 (427)
Q Consensus 196 ---~--~~-~~-----~----~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (427)
. +. +. + .+ + ..+..++.|..+|.-+.|...+.+.............-..-+
T Consensus 288 ~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~m 367 (571)
T KOG1237|consen 288 TDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTM 367 (571)
T ss_pred cccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhc
Confidence 0 00 00 0 00 0 011234456666666677666666555444433322211112
Q ss_pred hhc----cCCcHHHHHHHHHHHHHhhhcccccchhh----hhhhccccccchhHHHHHHHHHHHHHHHHHHhh-------
Q 014301 247 YDR----FGVNLQVAGTIAASFGMANLFSRPMGGVI----SDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR------- 311 (427)
Q Consensus 247 ~~~----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 311 (427)
... +.+++........ +...+...+--+. ..|+.+++.....+.-..+++.+..+.+...+.
T Consensus 368 dr~~~~~f~ip~asl~~f~~---~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~ 444 (571)
T KOG1237|consen 368 DRHLGSNFKIPAASLQVFIL---LSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLK 444 (571)
T ss_pred CCCCCCCeEeCchhHHHHHH---HHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhh
Confidence 111 2233333222222 2222222222222 222222111011111222223333333222211
Q ss_pred ----------ccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 312 ----------VNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 312 ----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
.-+.+..+.-.++.|++............- +.|++.|+.++++......+|..++..+.
T Consensus 445 ~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv 514 (571)
T KOG1237|consen 445 TAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLV 514 (571)
T ss_pred hhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113445566677888888877766666554 78999999999999999999999998888
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0014 Score=61.94 Aligned_cols=111 Identities=15% Similarity=0.032 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHh---------hccchHHHHHHHHHHH
Q 014301 256 VAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLG---------RVNSLWGSVLVMCVFS 326 (427)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g 326 (427)
..-.....++++..+|+.+..+.. .-++|. + .+......=.+....+++.. ..++.+..++..+++|
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~--~-~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~g 383 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDS--R-WLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFG 383 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCc--c-chHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHH
Confidence 344667778999999998665431 111121 0 11111222122222211111 1235566777789999
Q ss_pred HHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 327 VFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 327 ~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+..|...+..+.+.+ .+++++|..+..+...+-.+|-.+|..+.
T Consensus 384 ltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 384 FSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888 46777787777777777777777776654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.3e-05 Score=72.90 Aligned_cols=107 Identities=17% Similarity=0.060 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHHhch---hh------HHHHHHHHHHHhhccccc-cchHHHHHcccCcc---ccccchhhhhhhh
Q 014301 68 VASATLSLITAPIVLSASLV---SS------PQSFILVRFLVGFCLANF-VANQFWMSSMFSGC---VVGLANGVSAGWA 134 (427)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~---~~------~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 134 (427)
|+++++.++..+|.++..++ ++ .+.++++..+.++|.|+. +....+.+|.++++ +|.+.+.++....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57788888888888884443 22 367899999999999999 99999999999876 3566777888888
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHH
Q 014301 135 NMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLI 183 (427)
Q Consensus 135 ~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 183 (427)
++|..++..+.+.+.+ +.+|.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~---------~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQ---------NYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHH---------CS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhcc---------ccchhhhhhHHHHHHHHHHHHHHh
Confidence 8888877776666654 789999999998877776655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.2e-05 Score=52.58 Aligned_cols=63 Identities=21% Similarity=0.338 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhcccc
Q 014301 223 ILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRF 286 (427)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 286 (427)
.+-..+++.++.......++|.|+++. |+|+.+.|.+.++..+...++.++.|.++||.++++
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~~-Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQL-GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 344566677778888889999999874 999999999999999999999999999999999987
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.4e-05 Score=73.13 Aligned_cols=159 Identities=11% Similarity=0.065 Sum_probs=109.4
Q ss_pred HhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhh-ccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 014301 235 ELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRM-GRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN 313 (427)
Q Consensus 235 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (427)
+++....+..|+.+.+|++...+..+...+....-+..+++|+++|++ |+++ .+..+.++..++..++....
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~-------tIl~~~ii~~lG~~llai~a 75 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFK-------TILYLSIVYVVGHALLSFGA 75 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 455566677777777899998888888877777778889999999964 6654 44455555555544443321
Q ss_pred --------chHHHHHHHHHHHHHhhhhhhhhhhccccc-CcC---cceeeeehhcchhhhhhHHHHHHH-hhcc------
Q 014301 314 --------SLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKR---SLGVISGMTGSGGTVGAVVTQMLL-FSGS------ 374 (427)
Q Consensus 314 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~---~~g~~~g~~~~~~~~g~~~~~~~~-~~~~------ 374 (427)
.....++++.+...|.+..-+...+...+- +++ .+-..+.++....++|+.+++.+. ...+
T Consensus 76 ~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg 155 (654)
T TIGR00926 76 IPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG 155 (654)
T ss_pred CcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 123355677788888888888888877743 322 356677778888999999998887 4432
Q ss_pred -cccchhHHHHHHHHHHHHHHHHHhhc
Q 014301 375 -KFSKQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 375 -~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
..+|..+|.+.+++++++.++....+
T Consensus 156 ~~~~~~~aF~i~~i~m~ia~lvf~~g~ 182 (654)
T TIGR00926 156 CQDCYPLAFGVPAILMILALIVFMAGS 182 (654)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 23577788888777777776655433
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00064 Score=64.36 Aligned_cols=126 Identities=16% Similarity=0.115 Sum_probs=109.1
Q ss_pred hhhhhhcCCCcchhhHHHHHHHHHHHHhhcccc-ccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhcc
Q 014301 26 PIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMG-PVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCL 104 (427)
Q Consensus 26 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g-~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 104 (427)
-.....+++++.+.+...+.......+++.+.. .+...+|-|+.+..|+..-.+.....+++++.|++.....+.++..
T Consensus 266 ~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~ 345 (463)
T KOG2816|consen 266 LYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG 345 (463)
T ss_pred EEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Confidence 345667899999999888888888888888777 7888899999999999999999999999999999999999999988
Q ss_pred ccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 014301 105 ANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTA 151 (427)
Q Consensus 105 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 151 (427)
...+...+.++.+.+++++|++.++......+...+++.+-..+...
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88899999999999999999999999888877777776665555443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0013 Score=60.61 Aligned_cols=163 Identities=11% Similarity=0.018 Sum_probs=105.4
Q ss_pred HHhhhhhhhcchhhhc-cCCcHHHHHHHHHHH-HHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh
Q 014301 234 VELTTDNIIAQYFYDR-FGVNLQVAGTIAASF-GMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR 311 (427)
Q Consensus 234 ~~~~~~~~~~~~l~~~-~g~s~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (427)
-+-....++..|+.+. .|++.++..--.-+. .-...+..++...+.|.++.|+ .+....+...+...++.+
T Consensus 18 ~frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykp-------viil~~~~~i~t~~lll~ 90 (412)
T PF01770_consen 18 EFRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKP-------VIILQALSYIITWLLLLF 90 (412)
T ss_pred hcCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHHH
Confidence 3445567888888876 799988765432222 2244455567778999999987 566666666666666777
Q ss_pred ccchHHHHHHHHHHHHHhhhhhhhhhhcc-cccCcCcceeeeehhcchhhhhhHHHHHHH---hhcccccchhHHHHHHH
Q 014301 312 VNSLWGSVLVMCVFSVFVQAAGGLTFGVV-PFVSKRSLGVISGMTGSGGTVGAVVTQMLL---FSGSKFSKQTSISVMGL 387 (427)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~ 387 (427)
.++....-+.-+..|..... -...++++ +.+++++--++.+.......+|..++..+. ...+..++.....+...
T Consensus 91 ~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~ 169 (412)
T PF01770_consen 91 GTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLA 169 (412)
T ss_pred HCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 78888777777777777654 33333443 356777777778877777777777777666 33345566666555555
Q ss_pred HHHHHHHHHHhhccccC
Q 014301 388 MMIVCTLPVSLIYFPQW 404 (427)
Q Consensus 388 ~~~~~~~~~~~~~~~~~ 404 (427)
...++.+..+++...++
T Consensus 170 ~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 170 SVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHcCCCCc
Confidence 55555555566555443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00024 Score=67.36 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=111.7
Q ss_pred CCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhc-h---------hhHHHHHHHHHHHhhc
Q 014301 34 LTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASL-V---------SSPQSFILVRFLVGFC 103 (427)
Q Consensus 34 ~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~---------~~~~~l~~~r~l~G~~ 103 (427)
.|+...|.+..+..++..++.....+..-+..-|+++..+.++.++..+.-.. . ++.+-.+.--++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 88888999998899999999999998888889999988888877665554221 1 2222223334555555
Q ss_pred cccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHH
Q 014301 104 LANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVL 182 (427)
Q Consensus 104 ~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 182 (427)
.... .+...+++|..|+...|...++..+..|+|..++..++..+...+... ..+..+-.+..++..+..++...+..
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt-~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVT-RDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cccccchHHHHHHHHHHHHHHHHHHH
Confidence 5543 777788899999999999999999999999999999988888766521 11133344555566666656556666
Q ss_pred HHcCCCCCC
Q 014301 183 IYGQDLPSG 191 (427)
Q Consensus 183 ~~~~~~~~~ 191 (427)
+++|+.+..
T Consensus 411 lLp~~~~~~ 419 (433)
T PF03092_consen 411 LLPPQKRIT 419 (433)
T ss_pred HcCCCchhh
Confidence 776654443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0055 Score=53.33 Aligned_cols=308 Identities=14% Similarity=0.063 Sum_probs=164.6
Q ss_pred hhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcc
Q 014301 39 VGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSM 117 (427)
Q Consensus 39 ~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~ 117 (427)
.|.+.-.-.+...+..+......||+---.=..+..++.+.+..+.+++++.++=+.+-.+..++.|.- .+-.++ +..
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~l-ss~ 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLAL-SSR 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhh-hcc
Confidence 466666667777788888888899875544455666778888899999999999999999999988854 444333 333
Q ss_pred cCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccc
Q 014301 118 FSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFK 197 (427)
Q Consensus 118 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (427)
+++.. .+-+ +-|...+.++|..-...+.+. -..+-|...++...+.++.+...+++.++++.......+
T Consensus 143 Y~~~~----i~~W----SSGTGgAGliGa~SYa~lT~~---~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~ 211 (409)
T KOG3880|consen 143 YPSIV----IAGW----SSGTGGAGLIGASSYAFLTSW---ANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQ 211 (409)
T ss_pred CCCce----eccc----cCCCCcchhhhhhHHHHHhhh---cCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcC
Confidence 43322 2222 222222233443333333221 034667788887777766666666665543322110000
Q ss_pred -----------c-cchhh-----hhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhh-cchhhh-ccCCcHH---
Q 014301 198 -----------K-TKTES-----REEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNII-AQYFYD-RFGVNLQ--- 255 (427)
Q Consensus 198 -----------~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~-~~g~s~~--- 255 (427)
+ +.+++ +..+.++.++.+ ++.+...+-.....+..+.++.-+ +..+-+ ..|++..
T Consensus 212 ~~~~~~~~~~~~~~a~e~~sv~s~~~~~~e~~~~i---~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~s 288 (409)
T KOG3880|consen 212 PSTEIIPSQYLPFEAAEEKSVPSRRLGLKETLKRI---KPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDS 288 (409)
T ss_pred ccceeccCCCCcccccccccCchhhhcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhh
Confidence 0 00001 112222222221 223333333444444444444322 222211 1244322
Q ss_pred HHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHH---HHHhhccchHHHHHHHHHHHHHhhhh
Q 014301 256 VAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLC---VLLGRVNSLWGSVLVMCVFSVFVQAA 332 (427)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~ 332 (427)
+.-+....+.++..+.+ =+-|+-+-+ .++.+.+.-.+..+.. .+..+.++.+...+..+.=|+..|..
T Consensus 289 qYRwyqvlYQlGVFiSR-----SS~~~~~~p----~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGas 359 (409)
T KOG3880|consen 289 QYRWYQVLYQLGVFISR-----SSINLFTMP----YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGAS 359 (409)
T ss_pred cchhhheeeeeeEEEEe-----ccceEEech----HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchH
Confidence 23344444444433332 122222221 2333333333332222 23445667776666666667776776
Q ss_pred hhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 333 GGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 333 ~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+...+--+. +.+|++|-.+++.....-.+|-.++..+.
T Consensus 360 YVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 360 YVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 666655444 78999999999999998889988888766
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00053 Score=62.82 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHH---hhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHH
Q 014301 220 RGWILGLTYGFCFGVE---LTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLW 296 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 296 (427)
+-|..++...+..+.. +.-..-+..+.++-|| +.+.+-+...++.+..++..+.+-|+.||.|-|. ...
T Consensus 42 rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~-------a~l 113 (480)
T KOG2563|consen 42 RRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRT-------ALL 113 (480)
T ss_pred hHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHH-------HHH
Confidence 3355555544444332 2222223334555567 6666778888888899999999999999999986 455
Q ss_pred HHHHHHHHHHHHHhhc--c----chH--HHHHHHHHHHHHhhhhhhhhhhccc-----ccCcCcceeeeehhcchhhhhh
Q 014301 297 AVQTAAGLLCVLLGRV--N----SLW--GSVLVMCVFSVFVQAAGGLTFGVVP-----FVSKRSLGVISGMTGSGGTVGA 363 (427)
Q Consensus 297 ~~~~~~~~~~~~~~~~--~----~~~--~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~g~~~g~~~~~~~~g~ 363 (427)
++.....++..+=... + ..+ ....+-.+.+ ..++-...+.+ -.++++|.++..+..+.+.+|.
T Consensus 114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa----~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGv 189 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAA----AAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGV 189 (480)
T ss_pred HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHH----HhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHH
Confidence 5555555554432222 1 222 2223333333 33344444333 2489999999999988888888
Q ss_pred HHHHHHH
Q 014301 364 VVTQMLL 370 (427)
Q Consensus 364 ~~~~~~~ 370 (427)
+++..+-
T Consensus 190 avg~llp 196 (480)
T KOG2563|consen 190 AVGFLLP 196 (480)
T ss_pred HHHhhcc
Confidence 8776665
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0015 Score=59.55 Aligned_cols=128 Identities=12% Similarity=-0.023 Sum_probs=68.4
Q ss_pred hhhhhhhcchhhhccCC---cHHHHHHHHHH-HHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHH--
Q 014301 236 LTTDNIIAQYFYDRFGV---NLQVAGTIAAS-FGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLL-- 309 (427)
Q Consensus 236 ~~~~~~~~~~l~~~~g~---s~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 309 (427)
....+.+|.+..+..+- +....-..... +++...+|.....++-++-.|+. ......=.+..-.....
T Consensus 260 ~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l------~i~v~lR~lfiPlF~~cn~ 333 (406)
T KOG1479|consen 260 FVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKL------TIPVLLRLLFIPLFLLCNY 333 (406)
T ss_pred eeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCcee------hHHHHHHHHHHHHHHHhcc
Confidence 33444567766554321 23334444555 77888888666666544432221 12211111111111111
Q ss_pred ----hhccchHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHH
Q 014301 310 ----GRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQML 369 (427)
Q Consensus 310 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 369 (427)
...++.+..+....++|+..|-.....+.+++ .++++++-.+-.+...+-..|-+.|..+
T Consensus 334 ~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 334 PPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred CCCCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 12346667778888999999988888888888 4565555444444444444454444443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0038 Score=60.43 Aligned_cols=160 Identities=10% Similarity=0.090 Sum_probs=88.0
Q ss_pred HHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHH-
Q 014301 229 GFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCV- 307 (427)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (427)
++..++...+.......+...+|.+....+.+.+.+..+..+|+.+++++.++..++. ...-....+++.+...
T Consensus 24 f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-----~~~e~~i~l~~~~~~~l 98 (521)
T PRK03612 24 FVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-----VAVELLLALLGGLSALI 98 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3444455555555555565667888888888888888888888887777653322221 1111111111111111
Q ss_pred ---HHhhcc-chHHHHHHHHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH--hhcccccchhH
Q 014301 308 ---LLGRVN-SLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL--FSGSKFSKQTS 381 (427)
Q Consensus 308 ---~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~ 381 (427)
...... .........++.++..|+..|....+..+...++.|...|-......+|+.+|+.+. .+....|....
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t 178 (521)
T PRK03612 99 LYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRT 178 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHH
Confidence 111111 111223334455677777777666555543333456777888888889999888887 55555665544
Q ss_pred HHHHHHHHHHHH
Q 014301 382 ISVMGLMMIVCT 393 (427)
Q Consensus 382 ~~~~~~~~~~~~ 393 (427)
....+.+.++++
T Consensus 179 ~~~~a~l~~~~a 190 (521)
T PRK03612 179 AALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHHH
Confidence 444444433333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00015 Score=70.36 Aligned_cols=163 Identities=14% Similarity=0.091 Sum_probs=2.4
Q ss_pred HHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc
Q 014301 233 GVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV 312 (427)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (427)
....++....-.-++++++++..++|++.+.+-++.++..++..++.+|-.|.+ .+..+.++.+++.++....
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrpr-------wig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPR-------WIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc-------eeeecHHHHHHHHHHHhcc
Confidence 444455555555678889999999999999999999999999999988755443 3444444444444332210
Q ss_pred c--------------------------------------------------chHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 014301 313 N--------------------------------------------------SLWGSVLVMCVFSVFVQAAGGLTFGVVPF 342 (427)
Q Consensus 313 ~--------------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 342 (427)
+ ....++++.++.|+|....++...+++.|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 0 01345566677788887888888888885
Q ss_pred -cCcCcceeeeehhcchhhhhhHHHHHHH-----hhcc------------------cccchhHHHHHHHHHHHHHHHHHh
Q 014301 343 -VSKRSLGVISGMTGSGGTVGAVVTQMLL-----FSGS------------------KFSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 343 -~~~~~~g~~~g~~~~~~~~g~~~~~~~~-----~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
+++++.+...|+......+|.++|=.+. ...| -+.|..+|++.+.+.++..+.+..
T Consensus 169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5788888888888887777766554333 1111 013555666677777766666665
Q ss_pred hccc
Q 014301 399 IYFP 402 (427)
Q Consensus 399 ~~~~ 402 (427)
+.++
T Consensus 249 FPk~ 252 (539)
T PF03137_consen 249 FPKK 252 (539)
T ss_dssp ----
T ss_pred CCcc
Confidence 5543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0032 Score=57.93 Aligned_cols=145 Identities=16% Similarity=0.077 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHH
Q 014301 222 WILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTA 301 (427)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 301 (427)
.......+...+....-.++.++|+++. |.+....+......-+.+.+.+++.|..+||..-|.+.|+. .+......
T Consensus 35 i~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP--fI~~~s~~ 111 (498)
T KOG0637|consen 35 ISVASIAAGVQFGWALELSYLTPYLQSL-GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP--FILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHc-CCCcccccccccccccccceecccccccccccccccccccc--hHHHhhHH
Confidence 3333344444555556677899999876 99999888888888888999999999999974333222222 23333333
Q ss_pred HHHHHHHHhhcc-----------------chHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCccee-eeehhcchhhhh
Q 014301 302 AGLLCVLLGRVN-----------------SLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGV-ISGMTGSGGTVG 362 (427)
Q Consensus 302 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~-~~g~~~~~~~~g 362 (427)
..+.+.++.+.. .....++...+.-+.....+.+.-++..++ .++++-+ +++....+..+|
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG 191 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence 333333333321 122345555566677777777777777765 3333333 788877777777
Q ss_pred hHHHHHH
Q 014301 363 AVVTQML 369 (427)
Q Consensus 363 ~~~~~~~ 369 (427)
+.+|=.+
T Consensus 192 nvLGY~~ 198 (498)
T KOG0637|consen 192 NVLGYAL 198 (498)
T ss_pred ceeeeec
Confidence 7666433
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.12 Score=45.73 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=58.6
Q ss_pred HHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHH---HcccCcccc--
Q 014301 50 SIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWM---SSMFSGCVV-- 123 (427)
Q Consensus 50 ~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i---~~~~~~~~r-- 123 (427)
....+++.+.+.+++|-|.++.++.......... =+-+.+..++-+-...|++.+.. ..--+++ +|.+. +.|
T Consensus 71 l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya-~~~~~ 148 (390)
T KOG3097|consen 71 LIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYA-NQRGE 148 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchhHHhhccHHHhhccccccccccCcceecHHHHHHH-Hhhhh
Confidence 3344445558999999999999888876654332 23467889999999999998854 2222332 22221 223
Q ss_pred -------ccchhhhhhhhhhhHHHHHHHHH
Q 014301 124 -------GLANGVSAGWANMGAGVSQLLMP 146 (427)
Q Consensus 124 -------~~~~~~~~~~~~~G~~~g~~~~~ 146 (427)
.+..+.+...+.-+...|..+..
T Consensus 149 q~~~~~~~~ffg~Ffii~~~~qv~gn~iss 178 (390)
T KOG3097|consen 149 QAGDGMKVRFFGEFFIIFQCAQVWGNLISS 178 (390)
T ss_pred hccCceeeeehhHHHHHHHHHHHHHHHHHH
Confidence 45556555555555555444433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.039 Score=51.84 Aligned_cols=176 Identities=13% Similarity=0.026 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHH
Q 014301 221 GWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300 (427)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 300 (427)
.+.+.+..++.....-....-.+.++.+.+.-+..-.+.....-.+..++.+...|.+.||..|.+..+.....--....
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence 34566666666666666777778888777665655555666666778888888999999999988754444444444444
Q ss_pred HHHHHHHHHhhccc-----hHHH---HHHHHHHHHHhhhhhhhhhhccc-c----c---CcCcceeeeehhcchhhhhhH
Q 014301 301 AAGLLCVLLGRVNS-----LWGS---VLVMCVFSVFVQAAGGLTFGVVP-F----V---SKRSLGVISGMTGSGGTVGAV 364 (427)
Q Consensus 301 ~~~~~~~~~~~~~~-----~~~~---~~~~~~~g~~~~~~~~~~~~~~~-~----~---~~~~~g~~~g~~~~~~~~g~~ 364 (427)
++...+..+...++ .+.. .....+.+.............+. | + +++.....++...-+-.+...
T Consensus 84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl 163 (432)
T PF06963_consen 84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL 163 (432)
T ss_pred HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence 44444333322211 1221 12222222222222111111111 1 1 234455566666666678899
Q ss_pred HHHHHH-hhcccccchhHHHHHHHHHHHHHHHH
Q 014301 365 VTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPV 396 (427)
Q Consensus 365 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (427)
++|.+. ...+..++..+..+.++..+++...=
T Consensus 164 laPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vE 196 (432)
T PF06963_consen 164 LAPLFVGLLMTFASPVIAAIFIAGWNLASVFVE 196 (432)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 999999 77777888888877777777777653
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0049 Score=42.85 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=57.5
Q ss_pred HHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 014301 234 VELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN 313 (427)
Q Consensus 234 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (427)
.-+.+...+|...+| .++|..+.+++.+...++..+|.+...++.++.++++ ....+.....+........+
T Consensus 7 gRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 7 GRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR-------LLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 445556667776655 5999999999999999999999999999888755554 56666667777777776666
Q ss_pred chHH
Q 014301 314 SLWG 317 (427)
Q Consensus 314 ~~~~ 317 (427)
+.+.
T Consensus 79 ~~~~ 82 (85)
T PF06779_consen 79 SFWL 82 (85)
T ss_pred chHH
Confidence 6543
|
Note that many members are hypothetical proteins. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.091 Score=51.03 Aligned_cols=142 Identities=13% Similarity=0.042 Sum_probs=79.7
Q ss_pred HHHHHHHhHhhhccccchhhhh-hhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHH---HHHH
Q 014301 7 AWLSLFSCFFSTFSIPPLIPII-RHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITA---PIVL 82 (427)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---~~~~ 82 (427)
.....|++.+....+-.+..-+ .--+|-+..+.+.+.+++..|.++|+.+++++.++.-++ ....-..+.. ++..
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ 97 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSAL 97 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 3445555555555544444433 335688888999999999999999999998876432222 2222111111 1111
Q ss_pred HH----hchhhH-HHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHH
Q 014301 83 SA----SLVSSP-QSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFT 150 (427)
Q Consensus 83 ~~----~~~~~~-~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 150 (427)
+. ++...+ ..+....++.++..|+. |....+..+.. .++-++..|-......+|+++|.++.+++.-
T Consensus 98 ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 98 ILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 11 111111 12233344556666665 44444443322 2234667788888889999988887766543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.086 Score=48.78 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=74.0
Q ss_pred hhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccccCcC
Q 014301 267 ANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKR 346 (427)
Q Consensus 267 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 346 (427)
-..+..+...++.+|+.-+. | ...+..+..++++...+.++.+.-+++.++.+++.+..-.....+....++.
T Consensus 71 P~l~~Kl~aP~fi~~v~y~~----R---i~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~~ 143 (402)
T PF02487_consen 71 PSLLVKLIAPFFIHRVPYWI----R---ILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTHFYGKS 143 (402)
T ss_pred HHHHHHHHhHhhhhhccchH----H---HHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHHhcCcc
Confidence 34444556677788776543 2 2334445555666666778888888999999999988888887776655542
Q ss_pred cceeeeehhcchhhhhhHHHHHHH-hh-cccccchhHHHHHHHHHHHHHHH
Q 014301 347 SLGVISGMTGSGGTVGAVVTQMLL-FS-GSKFSKQTSISVMGLMMIVCTLP 395 (427)
Q Consensus 347 ~~g~~~g~~~~~~~~g~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 395 (427)
..+-.......++.+|+... .. ....+.+..+.....+.++-.+.
T Consensus 144 ----~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~ 190 (402)
T PF02487_consen 144 ----SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLS 190 (402)
T ss_pred ----ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 34555555666777777666 22 23455566666666555444433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.1 Score=46.46 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=82.7
Q ss_pred hhcchhhhccCCcH--HHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhcc--chH
Q 014301 241 IIAQYFYDRFGVNL--QVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVN--SLW 316 (427)
Q Consensus 241 ~~~~~l~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 316 (427)
..+.+..+. +.+. ...+...+...+....+.++.|.+.||.|||+ .................... +.+
T Consensus 24 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 24 ALPLLLSTL-SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRK-------VLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchH-------HHHHHHHHHHHHHHHHHhCccchHH
Confidence 344444333 3343 46778888888888888899999999998874 22222221122222222333 355
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccccCc--Ccceeeeehhcc-hhhhhhHHHHHHH-hhc--ccccchhHHHHH
Q 014301 317 GSVLVMCVFSVFVQAAGGLTFGVVPFVSK--RSLGVISGMTGS-GGTVGAVVTQMLL-FSG--SKFSKQTSISVM 385 (427)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~-~~~~g~~~~~~~~-~~~--~~~~~~~~~~~~ 385 (427)
...+.....|++.+...+...++..+..+ +.++...+.... ...++..++|.+. ... ...+|+..+...
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA 170 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 55555555778877777778888876544 467887887777 4667777777555 221 234555544333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.013 Score=57.90 Aligned_cols=179 Identities=15% Similarity=0.058 Sum_probs=114.7
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHH
Q 014301 219 YRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAV 298 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 298 (427)
+.+........+......++....-.-++++++++..+.|++.+.+-++..+......+...|..|.+ .+..+
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr-------~Ig~G 168 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPR-------WIGIG 168 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccc-------eeeec
Confidence 34443333333444444455555556678889999999999999899899988888888888877655 33333
Q ss_pred HHHHHHHHHHHhhc------------------------------------------------c-c--hH-HHHHHHHHHH
Q 014301 299 QTAAGLLCVLLGRV------------------------------------------------N-S--LW-GSVLVMCVFS 326 (427)
Q Consensus 299 ~~~~~~~~~~~~~~------------------------------------------------~-~--~~-~~~~~~~~~g 326 (427)
.++.+++.++..+. . + ++ .+..+.++.|
T Consensus 169 ~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~G 248 (735)
T KOG3626|consen 169 LVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLG 248 (735)
T ss_pred hhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhh
Confidence 33333333322110 0 0 12 4556667777
Q ss_pred HHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-----hhccc---------------ccchhHHHHH
Q 014301 327 VFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-----FSGSK---------------FSKQTSISVM 385 (427)
Q Consensus 327 ~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-----~~~~~---------------~~~~~~~~~~ 385 (427)
+|....++...+++.|. .+++.....|+..++..+|.++|=.+. ...|. +-|..+|++.
T Consensus 249 IG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~ 328 (735)
T KOG3626|consen 249 IGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC 328 (735)
T ss_pred cCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence 88777788888888854 666777788888877777766665554 12221 1366677788
Q ss_pred HHHHHHHHHHHHhhccccC
Q 014301 386 GLMMIVCTLPVSLIYFPQW 404 (427)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~ 404 (427)
+.+.++..+.++.+.+..+
T Consensus 329 g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 329 GALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHhCcccCc
Confidence 8888888887776665443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.097 Score=49.85 Aligned_cols=142 Identities=9% Similarity=0.034 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcchhhhccCC-----cHHHHHHHHHHHHHhhhcc-cccchhhhhhhccccccchhHH
Q 014301 220 RGWILGLTYGFCFGVELTTDNIIAQYFYDRFGV-----NLQVAGTIAASFGMANLFS-RPMGGVISDRMGRRFGIRGRLW 293 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-----s~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~~~~~~~~~~ 293 (427)
+++...+..++..+.++.. .-++|..+. +.+...++-+...+...+. .++.+++++|++|++ ...
T Consensus 8 k~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~----lf~ 78 (472)
T TIGR00769 8 KFLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEA----LFY 78 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH----hHH
Confidence 4555555555544443332 223444444 3355666666555544444 678899999999986 222
Q ss_pred HHHHHHHHHHHHHHHH--hhcc--------------------------chHHHHHHHHHHHHHhhhhhh-hhhhccccc-
Q 014301 294 GLWAVQTAAGLLCVLL--GRVN--------------------------SLWGSVLVMCVFSVFVQAAGG-LTFGVVPFV- 343 (427)
Q Consensus 294 ~~~~~~~~~~~~~~~~--~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~- 343 (427)
................ +..+ +.|...+..+...+......+ ..++.++|+
T Consensus 79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~ 158 (472)
T TIGR00769 79 TVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQIT 158 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2222222211111111 1111 122333333444444444555 668888876
Q ss_pred CcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 344 SKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 344 ~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
.+++..+-+++....+++|..+++.+.
T Consensus 159 t~~qakRfy~l~~~ganlg~i~sg~~~ 185 (472)
T TIGR00769 159 TIDEAKRFYALFGLGANVALIFSGRTI 185 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788899999999999999999887
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.075 Score=50.08 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=71.7
Q ss_pred HHHHHHhhccccccc---cccCCchHHHHHHHHHHHHHHHHhch------------------hhHHHHHHHHHHHhhccc
Q 014301 47 FLGSIFSRLAMGPVC---DLLGPRVASATLSLITAPIVLSASLV------------------SSPQSFILVRFLVGFCLA 105 (427)
Q Consensus 47 ~l~~~~~~~~~g~l~---dr~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~~ 105 (427)
.++..+++.+.+.++ +|+||++.+.++..+..++.++.-.. +++...++.-++.|++-+
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~ 368 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA 368 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH
Confidence 344445555555665 56799999999999977777765442 246677777899999999
Q ss_pred cc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHH
Q 014301 106 NF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMP 146 (427)
Q Consensus 106 ~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 146 (427)
.. ...+..+++.+ +++|..+.++......++..++....+
T Consensus 369 ~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 369 CFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 87 77777778888 678888888887777777765554444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.047 Score=43.38 Aligned_cols=102 Identities=7% Similarity=-0.041 Sum_probs=72.4
Q ss_pred HHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcc
Q 014301 261 AASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVV 340 (427)
Q Consensus 261 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 340 (427)
.++......++.++.+.+.+++|.|+ .+.++.....+.... .+.++.+..+....+.|++.+..+...-.+.
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~-------sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~yl 114 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKW-------SMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYL 114 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHH-------HHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHH
Confidence 34444555666677888999999986 555555544433322 3445677888888999999999999887777
Q ss_pred ccc-CcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 341 PFV-SKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 341 ~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
.+. .++.+++-.|+.-.+.+.+..+|+.+.
T Consensus 115 t~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 115 TSYSTEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 755 556688888887777777777777665
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.056 Score=50.31 Aligned_cols=85 Identities=6% Similarity=-0.066 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccc-cCc---CcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHH
Q 014301 316 WGSVLVMCVFSVFVQAAGGLTFGVVPF-VSK---RSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMI 390 (427)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~---~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 390 (427)
..+++++.+.++|.|..-|...++..+ +++ +++.+....+....++|..+++... +..+..+|..+|.+.++..+
T Consensus 34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~ 113 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML 113 (372)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence 578888889999999999999888874 433 3466677788889999999999888 88889999999999998888
Q ss_pred HHHHHHHhhc
Q 014301 391 VCTLPVSLIY 400 (427)
Q Consensus 391 ~~~~~~~~~~ 400 (427)
++.+....-+
T Consensus 114 ~~~~~f~~~~ 123 (372)
T PF00854_consen 114 LALIVFLSGR 123 (372)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHhCC
Confidence 8877655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.48 Score=43.74 Aligned_cols=35 Identities=6% Similarity=0.228 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcccccCcCcce
Q 014301 315 LWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLG 349 (427)
Q Consensus 315 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g 349 (427)
.....+...+.+.+.+..++..+...++.|+|...
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytq 151 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQ 151 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHH
Confidence 44566677778888888899999999999888744
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.019 Score=51.81 Aligned_cols=57 Identities=16% Similarity=0.065 Sum_probs=3.5
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 314 SLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
+.+..++..+++|+..|-..+..+.+.+ .+++++|..+-.+....-.+|-.+|..+.
T Consensus 247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp --------------------HHHH----------------------------------
T ss_pred chHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788899999998888888888 45777777766666666667766666544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.92 Score=41.21 Aligned_cols=71 Identities=13% Similarity=0.025 Sum_probs=44.3
Q ss_pred HHHHHHHHhHhhhccccchhhhhhhhcCC-CcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHH
Q 014301 6 LAWLSLFSCFFSTFSIPPLIPIIRHDLNL-TDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLI 76 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 76 (427)
.....+++...+.-++.........+++- |......-..+-.....+..++.|...|+..|+|++...+.+
T Consensus 31 ~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~l 102 (503)
T KOG2601|consen 31 FLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLL 102 (503)
T ss_pred hhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhh
Confidence 34555666666655555555555555543 222233333333445567777888999999999999887776
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.23 Score=42.42 Aligned_cols=151 Identities=9% Similarity=0.034 Sum_probs=75.5
Q ss_pred hcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHH
Q 014301 216 LKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGL 295 (427)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 295 (427)
+++-.+....+.+.+.-.....-..+++.|..+..+++.+..+++-.+..+.....+.+-.-.- .-|+|.... -...
T Consensus 198 F~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~eip-wngkrlKay--YsaG 274 (412)
T KOG4830|consen 198 FGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNSEIP-WNGKRLKAY--YSAG 274 (412)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcccCC-cCcceeeee--eecc
Confidence 4444566677777666666666677888888888777777666655555544443333222110 111221100 0011
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc---CcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 296 WAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV---SKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
.+.-+.++..+.+.+..-+. ..+....+.|+..........++.+++ ..+..+...|..+++-.....++-.+.
T Consensus 275 giiwifcga~ilLlpr~i~s-ymyAisvfIGIAnAimlvtslsitavli~~~~~~~aFv~GamSF~DKlS~GiA~~li 351 (412)
T KOG4830|consen 275 GIIWIFCGAVILLLPRGIKS-YMYAISVFIGIANAIMLVTSLSITAVLINKNTESGAFVYGAMSFFDKLSNGIAYQLI 351 (412)
T ss_pred cHHHHHhhhheeecccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEEehHHHHHhhcccHHHHHH
Confidence 11111122222222211122 222333445666555544443443322 455677788888888887777776665
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.75 E-value=1.4 Score=43.32 Aligned_cols=167 Identities=10% Similarity=-0.024 Sum_probs=105.8
Q ss_pred HHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 014301 227 TYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLC 306 (427)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (427)
.-.+-..+.++....+-.|+.+.++.+...+.-.............+.+++++|-+--|. ..+.++..+..+++
T Consensus 45 ~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry------~tI~~~s~i~~~G~ 118 (571)
T KOG1237|consen 45 NEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRY------FTINIGSLISLLGL 118 (571)
T ss_pred HHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHH
Confidence 333445566666677888888888888877777766666667777788899999765443 13333333333333
Q ss_pred HHHhhcc----------------------c---hHHHHHHHHHHHHHhhhhhhhhhhcccc-cC---cC-cce--eeeeh
Q 014301 307 VLLGRVN----------------------S---LWGSVLVMCVFSVFVQAAGGLTFGVVPF-VS---KR-SLG--VISGM 354 (427)
Q Consensus 307 ~~~~~~~----------------------~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~---~~-~~g--~~~g~ 354 (427)
..+.... + ...+...+.+..+|.+..-+...+..++ ++ ++ .+. .-+..
T Consensus 119 ~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW 198 (571)
T KOG1237|consen 119 FGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNW 198 (571)
T ss_pred HHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhH
Confidence 2221110 0 1134455555666777777777777764 33 22 222 44455
Q ss_pred hcchhhhhhHHHHHHH-hhcccccchhHHHHHHHHHHHHHHHHHhh
Q 014301 355 TGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 355 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (427)
.....+.|..++-.+. +..+..+|...+-+..++..++.++.+..
T Consensus 199 ~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g 244 (571)
T KOG1237|consen 199 FYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPG 244 (571)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcC
Confidence 5566778888777777 77788999999988888888887776553
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.23 E-value=2.5 Score=40.78 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=31.1
Q ss_pred hhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH
Q 014301 335 LTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL 370 (427)
Q Consensus 335 ~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~ 370 (427)
..+.+++++ ..++..+-+++....+++|..+++.+.
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~ 200 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLT 200 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888876 677888999999999999999999888
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=90.79 E-value=2 Score=40.86 Aligned_cols=146 Identities=16% Similarity=0.113 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHhHhhhccccchhh-hhhhhc-CCCcc-hhhHHHHHHHHHHHHhhccccccccccCCc-hHHHHHHHH--
Q 014301 3 AFHLAWLSLFSCFFSTFSIPPLIP-IIRHDL-NLTDT-DVGTAGMASFLGSIFSRLAMGPVCDLLGPR-VASATLSLI-- 76 (427)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~s~~-~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr-~~~~~~~~~-- 76 (427)
+.+...+..+++++...++-|... .+..+- +.++. -.-.....+.++-.+|..+..+.. .-++| +.+.+..+.
T Consensus 270 ki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~ 348 (437)
T TIGR00939 270 KVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRV 348 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHH
Confidence 444455556666665554333332 222221 23332 223456667777777776554321 11222 133333332
Q ss_pred -HHHHHHHHhc---------hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHH
Q 014301 77 -TAPIVLSASL---------VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLM 145 (427)
Q Consensus 77 -~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~ 145 (427)
+.--.++|.. -++-+..++..++.|+.+|-. .....+..+..++++|..+-.+...+..+|..+|..++
T Consensus 349 iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 349 LFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233332 246677788899999999976 66666677788889998888888888888887777665
Q ss_pred HHHH
Q 014301 146 PLIF 149 (427)
Q Consensus 146 ~~l~ 149 (427)
-.+.
T Consensus 429 ~~~~ 432 (437)
T TIGR00939 429 FLFV 432 (437)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.49 E-value=2.2 Score=39.12 Aligned_cols=141 Identities=20% Similarity=0.268 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhh-----hhccccccchhHHH
Q 014301 220 RGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISD-----RMGRRFGIRGRLWG 294 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~~~~~~~ 294 (427)
++..+...+ +..+.-.+....+|..++.. |.|-.+.+.....++--. --++...+.| |+|||+. ++
T Consensus 32 ~illLl~LY-llQGiP~GL~~~iP~lL~ak-~vSyt~~a~fS~ay~P~s--LKllWaPiVDs~y~k~~Grrks-----Wv 102 (510)
T KOG3574|consen 32 SILLLLFLY-LLQGIPLGLIGAIPLLLQAK-GVSYTSQAIFSFAYWPFS--LKLLWAPIVDSVYSKRFGRRKS-----WV 102 (510)
T ss_pred hHHHHHHHH-HHcCCchhHhhhhHHHhcCC-CcchhhhhhhhhhhhHHH--HHHHHHhhhHHHHHHhhccccc-----ee
Confidence 344444444 44555566666788888754 777665554433221111 1234555666 9999974 22
Q ss_pred HHHHHHHHHHHHHHHhhcc-----------chHHHHHHHHHHHHHhhhhhhhhhhccc-ccCcCcceeeeehhcchhhhh
Q 014301 295 LWAVQTAAGLLCVLLGRVN-----------SLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVG 362 (427)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g 362 (427)
.- +..+.+..+..+.... +.......++++-+....---......- -..+++.|-++.........|
T Consensus 103 vp-~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~G 181 (510)
T KOG3574|consen 103 VP-CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAG 181 (510)
T ss_pred ee-hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhh
Confidence 22 2222333333332211 1111111222333332222222222222 236777777766666666677
Q ss_pred hHHHHHHH
Q 014301 363 AVVTQMLL 370 (427)
Q Consensus 363 ~~~~~~~~ 370 (427)
.+++..++
T Consensus 182 yfL~~~if 189 (510)
T KOG3574|consen 182 YFLGNVVF 189 (510)
T ss_pred HHhhccee
Confidence 77777665
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.038 Score=47.35 Aligned_cols=90 Identities=10% Similarity=0.062 Sum_probs=57.0
Q ss_pred cchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 014301 243 AQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVM 322 (427)
Q Consensus 243 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (427)
..|+.+.+|+...+.+.++..-.....+...+.|-++||.|||+ . .+...+.-+...+--..+......++-
T Consensus 60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKr-------a-cvtycitYiLsCiTKhSpqYkVLmVGR 131 (454)
T KOG4332|consen 60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKR-------A-CVTYCITYILSCITKHSPQYKVLMVGR 131 (454)
T ss_pred eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhcccc-------c-eeeehHHHHHHHHhhcCCceEEEeehh
Confidence 34566778988888888766555555566677788999999997 2 222222222223333444555666777
Q ss_pred HHHHHHhhhhhhhhhhcc
Q 014301 323 CVFSVFVQAAGGLTFGVV 340 (427)
Q Consensus 323 ~~~g~~~~~~~~~~~~~~ 340 (427)
.+-|+.....+...-++.
T Consensus 132 ~LGGiaTsLLFSaFEsWl 149 (454)
T KOG4332|consen 132 VLGGIATSLLFSAFESWL 149 (454)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 777777777777665433
|
|
| >PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter | Back alignment and domain information |
|---|
Probab=85.70 E-value=3 Score=40.76 Aligned_cols=25 Identities=4% Similarity=0.206 Sum_probs=13.5
Q ss_pred HHHHHhhhcccccchhhhhhhcccc
Q 014301 262 ASFGMANLFSRPMGGVISDRMGRRF 286 (427)
Q Consensus 262 ~~~~~~~~~~~~~~g~l~d~~~~~~ 286 (427)
..+.+.+.+++..++++-..++.++
T Consensus 304 ~~y~~~~~iaGy~S~~~yk~~~g~~ 328 (521)
T PF02990_consen 304 ILYALTSFIAGYVSARLYKSFGGKK 328 (521)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCc
Confidence 3344455555555666655555543
|
Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=83.27 E-value=7.8 Score=37.05 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhh-hhhcchhhh-ccCCcHHHHHHHHH---HHHHhhhcccccchhhhhhhccccc
Q 014301 224 LGLTYGFCFGVELTTD-NIIAQYFYD-RFGVNLQVAGTIAA---SFGMANLFSRPMGGVISDRMGRRFG 287 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~-~~~~~~l~~-~~g~s~~~~~~~~~---~~~~~~~~~~~~~g~l~d~~~~~~~ 287 (427)
+.+.+.+. +.-.++. .-+|..+++ ..+.|-.+.+.+.. .+++=-+-+.++=....+|+|||+.
T Consensus 5 L~~LY~lQ-GiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKS 72 (544)
T PF13000_consen 5 LVLLYFLQ-GIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKS 72 (544)
T ss_pred HHHHHHHc-CcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcch
Confidence 34444333 3333443 567888876 12566555544322 1222222223334456668899873
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.33 E-value=7.5 Score=35.64 Aligned_cols=172 Identities=14% Similarity=0.016 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHH
Q 014301 222 WILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTA 301 (427)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 301 (427)
..+.+.+++.....-....-...|+.+..|-|....+....+-+....+-..+.|...|+..|+|..+..+..--.+.++
T Consensus 30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v 109 (503)
T KOG2601|consen 30 IFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV 109 (503)
T ss_pred ehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence 34444555555444444455566666666655555555555555566666677788899999987544433333333334
Q ss_pred HHHHHHHHhhcc-----chHHHHHHHHHHHHHhhhh--hhhhhhccc--c----c----CcCcceeeeehhcchhhhhhH
Q 014301 302 AGLLCVLLGRVN-----SLWGSVLVMCVFSVFVQAA--GGLTFGVVP--F----V----SKRSLGVISGMTGSGGTVGAV 364 (427)
Q Consensus 302 ~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~--~~~~~~~~~--~----~----~~~~~g~~~g~~~~~~~~g~~ 364 (427)
++.....+...+ +.+....+..+........ ......... | + ++.......+.....-.....
T Consensus 110 agglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~ 189 (503)
T KOG2601|consen 110 AGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNL 189 (503)
T ss_pred HHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhc
Confidence 333333222222 3333333322222211111 111111111 1 1 222233334555555566677
Q ss_pred HHHHHH-hhcccccchhHHHHHHHHHHHHH
Q 014301 365 VTQMLL-FSGSKFSKQTSISVMGLMMIVCT 393 (427)
Q Consensus 365 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 393 (427)
+.|.+. .+....+.+..-..+++..+++.
T Consensus 190 Lapv~tg~Iitfvsl~~~~g~f~~w~~vsm 219 (503)
T KOG2601|consen 190 LAPVITGLIITFVSLRASAGTFAAWALVSM 219 (503)
T ss_pred hhhhhhcccceeechhhhhhhhHHHHHHHH
Confidence 788777 55555566655555555554433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 427 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 2e-20 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 61/400 (15%), Positives = 116/400 (29%), Gaps = 41/400 (10%)
Query: 30 HDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATL----SLITAPIVLSAS 85
+ + D+G A + FS+ MG V D PRV + + +
Sbjct: 55 VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW 114
Query: 86 LVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSGCVVGLAN-------GVSAGWANMGA 138
SS ++ FL G+ + C + + G N
Sbjct: 115 ATSSIAVMFVLLFLCGWF----------QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 164
Query: 139 GVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPS-------- 190
V + PL+F + W A +P+ L A+ +D P
Sbjct: 165 NVGGGIPPLLFLLGMAWFND----WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE 220
Query: 191 ---GNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFY 247
+Y + K E + L N W + + F + + + Y
Sbjct: 221 EYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 280
Query: 248 DRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCV 307
+ L + + A + + G +SD++ R RG + +
Sbjct: 281 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN--RGATGVFFMTLVTIATIVY 338
Query: 308 LLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVISGMTGSGGTVGAVVT 366
+ + ++ M V + L K++ G +G TG G +G V
Sbjct: 339 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 398
Query: 367 QMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYFPQWGG 406
+ ++MI ++ ++ G
Sbjct: 399 ASAIV--GYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 436
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.53 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.52 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.5 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.43 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.41 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.4 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.25 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=319.82 Aligned_cols=379 Identities=17% Similarity=0.172 Sum_probs=305.8
Q ss_pred HHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHh
Q 014301 6 LAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSAS 85 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 85 (427)
..++..+...++.....+.+|.+.+++ .|+.+.|++.+++.++..++++++|+++||+|||++++.+.++.+++.++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 110 (451)
T 1pw4_A 32 GIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG 110 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 344556666677778899999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred c----hhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcc
Q 014301 86 L----VSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTH 160 (427)
Q Consensus 86 ~----~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~ 160 (427)
+ ++|++.++++|+++|++.+.. ++..+++.|++|+++|++++++.+...++|..+++.+++.+.+ .
T Consensus 111 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---------~ 181 (451)
T 1pw4_A 111 FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA---------W 181 (451)
T ss_dssp HCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH---------H
T ss_pred hhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------H
Confidence 9 999999999999999999977 8889999999999999999999999999999888887776554 5
Q ss_pred cc-hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccc--c--------hhhhhhhhHHH-HHhhhcCchHHHHHHHH
Q 014301 161 TA-WRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKT--K--------TESREEKFVHV-LFNGLKNYRGWILGLTY 228 (427)
Q Consensus 161 ~~-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 228 (427)
.+ ||+.|++.+++.++..++.++..+|.|++.+.+.+++ + +++++.+.++. .++.+|+|.++...+..
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHH
Confidence 67 9999999998888777666665555444321111100 0 00000111222 46788999999999999
Q ss_pred HHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhh--ccccccchhHHHHHHHHHHHH-HH
Q 014301 229 GFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRM--GRRFGIRGRLWGLWAVQTAAG-LL 305 (427)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~-~~ 305 (427)
++..........+.|.|+++.+|.++.+.+...+...++.+++.++.+++.||+ ++|+ ....+..+.. +.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-------~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-------ATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-------hHHHHHHHHHHHH
Confidence 888888899999999999998899999999999999999999999999999999 8775 3333333333 44
Q ss_pred HHHHhhc--cchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhh-hhHHHHHHH-hhcccccchh
Q 014301 306 CVLLGRV--NSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTV-GAVVTQMLL-FSGSKFSKQT 380 (427)
Q Consensus 306 ~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~-g~~~~~~~~-~~~~~~~~~~ 380 (427)
+..+... .+.+...+..++.|++.+...+....+..+ .|+++||+++|+.+...++ |..++|.+. ...+..++..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 414 (451)
T 1pw4_A 335 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 414 (451)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHH
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 4444443 356667777778888888888877777775 5778899999999999999 999999998 6777778999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 014301 381 SISVMGLMMIVCTLPVSLIYF 401 (427)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~ 401 (427)
.+...+++.+++.+......+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 415 GFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 998888888877776665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=307.29 Aligned_cols=371 Identities=13% Similarity=0.111 Sum_probs=290.7
Q ss_pred HHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHH-
Q 014301 6 LAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSA- 84 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~- 84 (427)
..++..+...++....++..|.+.+++|.|+.+.|++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3445566666667788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --hchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHH-HHHhh------
Q 014301 85 --SLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIF-TAITS------ 154 (427)
Q Consensus 85 --~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~l~~------ 154 (427)
++++|++.++++|++.|++.+.. +...+++.|++|+++|++++++.+...++|..+++.+++.+. ....+
T Consensus 110 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 189 (438)
T 3o7q_A 110 PAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL 189 (438)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHH
T ss_pred hccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 88999999999999999999987 888999999999999999999999999999988888777665 21000
Q ss_pred ----------ccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHH
Q 014301 155 ----------LNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWIL 224 (427)
Q Consensus 155 ----------~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (427)
.+.....+||+.|++.++..++..+..++.++ |++++++.++++ + ++.++.+++.+|+|+++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~ 263 (438)
T 3o7q_A 190 DKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDNHSDAK---Q-GSFSASLSRLARIRHWRWA 263 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTCCCCSS---T-TSHHHHHHHHTTCSHHHHH
T ss_pred ccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Cccccccccccc---c-cchhhhHHHHHhChHHHHH
Confidence 00000011999998888777766655444322 222221111111 1 3344566788899999999
Q ss_pred HHHHHHHHHHHhhhhhhhcch-hhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHH
Q 014301 225 GLTYGFCFGVELTTDNIIAQY-FYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAG 303 (427)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 303 (427)
.+..++..........+.|.| +++.+|.++.+++...+...++.++++++.+++.||++||+ ....+..+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-------~~~~~~~~~~ 336 (438)
T 3o7q_A 264 VLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK-------VLAAYALIAM 336 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-------HHHHHHHHHH
Confidence 999888888888999999999 88888999999999999999999999999999999999986 5555556666
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhccccc-chh
Q 014301 304 LLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFS-KQT 380 (427)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~-~~~ 380 (427)
+.+......++.+. ....++.+++.+...+...++..+ .|++ ++++.++.. .+.+|+.++|.+. ...+..+ ++.
T Consensus 337 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~ 413 (438)
T 3o7q_A 337 ALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPT 413 (438)
T ss_dssp HHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGG
T ss_pred HHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHH
Confidence 66666666655544 344577888888888888888664 4544 888888776 6779999999998 6666666 888
Q ss_pred HHHHHHHHHHHH
Q 014301 381 SISVMGLMMIVC 392 (427)
Q Consensus 381 ~~~~~~~~~~~~ 392 (427)
.+...+++.++.
T Consensus 414 ~~~~~~~~~~~~ 425 (438)
T 3o7q_A 414 AELIPALCFAVI 425 (438)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887655544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=291.22 Aligned_cols=353 Identities=15% Similarity=0.039 Sum_probs=279.2
Q ss_pred HHHHHHHHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHh
Q 014301 6 LAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSAS 85 (427)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 85 (427)
..++..++..++.....+..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 45667777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchh
Q 014301 86 LVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWR 164 (427)
Q Consensus 86 ~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr 164 (427)
+++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+...++|..+++.+++.+.+ ..+||
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~~~~ 154 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT---------MWNWR 154 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC---------HHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---------hccHH
Confidence 9999999999999999999977 8888999999999999999999988888888777666655442 56999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcc
Q 014301 165 LAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQ 244 (427)
Q Consensus 165 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (427)
+.|++.++..++..+..++..||++++++++ + + .++.+++.+|+|+++...+..++..........+.|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRPVDAPR---T--R-----LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV 224 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC---C--C-----TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCCCCccc---c--c-----HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887776653333333322221111 0 0 1112345567788988888888888888899999999
Q ss_pred hhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHH-HHHHHHHHHHhh--ccchHHHHHH
Q 014301 245 YFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQ-TAAGLLCVLLGR--VNSLWGSVLV 321 (427)
Q Consensus 245 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~ 321 (427)
|+++.+|.++.+.+...+...++.+++.++.+++.||.+++. ...... ............ .++.+...+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T 2gfp_A 225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM-------WQSVICCLLAGLLMWIPDWFGVMNVWTLLVP 297 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH-------HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhccccHHHHHHH
Confidence 999888999999999999999999999999999999988732 111111 111111111111 2355556677
Q ss_pred HHHHHHHhhhhhhhhhhcccccCcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhHHHH
Q 014301 322 MCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTSISV 384 (427)
Q Consensus 322 ~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~ 384 (427)
.++.+++.+...+...++..|..|++||++.|+.+...++|..++|.+. ...+..++...+..
T Consensus 298 ~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 298 AALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 7888899888888888888876448899999999999999999999888 55555566655554
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=283.72 Aligned_cols=387 Identities=12% Similarity=0.022 Sum_probs=271.9
Q ss_pred hHHHHHHHHHhHhhhccccchh-hhhhhh-----cCCCcchhhHHHHHHHHHHHHhhccccccccc-cCCchHHHHHHHH
Q 014301 4 FHLAWLSLFSCFFSTFSIPPLI-PIIRHD-----LNLTDTDVGTAGMASFLGSIFSRLAMGPVCDL-LGPRVASATLSLI 76 (427)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~-----~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~~ 76 (427)
++..+...+...+..+...+.+ +.+.++ +|.|+.+.+++.+.+.++..++++++|+++|| +|||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 3344445555555555444444 445555 99999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccc--cccchhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 014301 77 TAPIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCV--VGLANGVSAGWANMGAGVSQLLMPLIFTAIT 153 (427)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~ 153 (427)
.+++.+++++++|++.++++|+++|++.+.. +...++++|++|+++ |+.++++.+...++|..+++.+++.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--- 171 (491)
T 4aps_A 95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE--- 171 (491)
T ss_dssp HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh---
Confidence 9999999999999999999999999999987 888999999999988 7778888888888888888777776655
Q ss_pred hccCCcccchhHHHHHHHHHHHHHHHHHHHHcCC-CCCCCcccccccchhhhhhhh------------------------
Q 014301 154 SLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQD-LPSGNYKEFKKTKTESREEKF------------------------ 208 (427)
Q Consensus 154 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------ 208 (427)
+.+||+.|++.++..++..+..++..++ .+++.+++.++..++++++..
T Consensus 172 ------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 245 (491)
T 4aps_A 172 ------AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS 245 (491)
T ss_dssp ------HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 6799999999887777666555544332 222111111111111110000
Q ss_pred ------------------------HHH---HHhhhcCchHHHHHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHH
Q 014301 209 ------------------------VHV---LFNGLKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIA 261 (427)
Q Consensus 209 ------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~ 261 (427)
++. .++..+....+...+..............++|.|.++..+.+..+.+...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (491)
T 4aps_A 246 LPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQ 325 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGT
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHh
Confidence 000 01111122244455555566666777778888898887777766677777
Q ss_pred HHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc---------cchHHHHHHHHHHHHHhhhh
Q 014301 262 ASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV---------NSLWGSVLVMCVFSVFVQAA 332 (427)
Q Consensus 262 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~ 332 (427)
....+...++..+.+++.||++||+... ...+..+..+..+.+..+... .+.+......++.+++.+..
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 403 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQPSS--PTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLI 403 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC---C--HHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 7888888888999999999999986321 112223333333333333221 25566677778889998888
Q ss_pred hhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHhhcc
Q 014301 333 GGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYF 401 (427)
Q Consensus 333 ~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (427)
.+...++..+ .|++.||++.|+.+...++|..++|.+.......++...+...+++.+++.+..+...+
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888885 58888999999999999999999999983333346677777777777766666555433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=276.85 Aligned_cols=381 Identities=11% Similarity=0.059 Sum_probs=250.3
Q ss_pred HHHHhHhhhccccchhhhhhhhcCC--------CcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHH
Q 014301 10 SLFSCFFSTFSIPPLIPIIRHDLNL--------TDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIV 81 (427)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (427)
..++.+++...++..+|.+.++++. ++.+.|++.+.+.+|..++++++|+++||+|||++++++.+++.++.
T Consensus 20 g~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~ 99 (491)
T 4gc0_A 20 GGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISG 99 (491)
T ss_dssp HHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3445566777788899999888743 34567899999999999999999999999999999999999999999
Q ss_pred HHHh------------------chhhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHH
Q 014301 82 LSAS------------------LVSSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQ 142 (427)
Q Consensus 82 ~~~~------------------~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 142 (427)
++++ +++|+++++++|+++|++.|+. +....+++|+.|+++|++..++.+.....|..+++
T Consensus 100 i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~ 179 (491)
T 4gc0_A 100 VGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVY 179 (491)
T ss_dssp HHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhh
Confidence 9998 4789999999999999999987 88899999999999999999999888888877766
Q ss_pred HHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCC-----Cccccccc---------c--h-hhhh
Q 014301 143 LLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSG-----NYKEFKKT---------K--T-ESRE 205 (427)
Q Consensus 143 ~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---------~--~-~~~~ 205 (427)
.++........ ....+..+||+.+.+..+..++..+..++.||. |+. ++++.++. . + .+.+
T Consensus 180 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peS-p~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 257 (491)
T 4gc0_A 180 CVNYFIARSGD-ASWLNTDGWRYMFASECIPALLFLMLLYTVPES-PRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIK 257 (491)
T ss_dssp HHHHHHHTTSC-TTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCC-HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhccccc-cccccchhhHHHhhhhhhhhhhhhhhhhcCCCC-hHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHH
Confidence 66554433211 111224578988888887777766655555443 210 10000000 0 0 0000
Q ss_pred hhh---H--HHHHhhhcCchHHHHHHHHHHHHHH-HhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhh
Q 014301 206 EKF---V--HVLFNGLKNYRGWILGLTYGFCFGV-ELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVIS 279 (427)
Q Consensus 206 ~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~ 279 (427)
+.. + .......+.++.........+.... ......+.+.+ .+..+.+..+........++...++.++.+++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 336 (491)
T 4gc0_A 258 HSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTV 336 (491)
T ss_dssp HHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHH-HHhcCCCccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0011122333333333333222222 23333344444 444578887777777888889999999999999
Q ss_pred hhhccccccchhHHHHHHHHHHHHHHHHHHh----hccchHHHHHHHHHHHHHhhhh-hhhhhhccccc-CcCcceeeee
Q 014301 280 DRMGRRFGIRGRLWGLWAVQTAAGLLCVLLG----RVNSLWGSVLVMCVFSVFVQAA-GGLTFGVVPFV-SKRSLGVISG 353 (427)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~~~g~~~g 353 (427)
||+|||+ ....+.....+.+..+. ...+.+...+...++..+.+.. .+..+.+.+|+ |++.|+++.|
T Consensus 337 dr~Grr~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g 409 (491)
T 4gc0_A 337 DKFGRKP-------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALA 409 (491)
T ss_dssp HHHCSHH-------HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHH
T ss_pred HhhcCcc-------hhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHH
Confidence 9999997 33333333333222221 1223333333444444444433 34556777876 7888999999
Q ss_pred hhcchhhhhhHHHHHHH-hhcc------cccchhHHHHHHHHHHHHHHHHHhhc
Q 014301 354 MTGSGGTVGAVVTQMLL-FSGS------KFSKQTSISVMGLMMIVCTLPVSLIY 400 (427)
Q Consensus 354 ~~~~~~~~g~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (427)
+.+..+++++.+++.+. ...+ ..+....+.+.+++.+++.+..++..
T Consensus 410 ~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~ 463 (491)
T 4gc0_A 410 IAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 463 (491)
T ss_dssp HHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999988776 3222 23445567777777777776655444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=265.51 Aligned_cols=378 Identities=16% Similarity=0.109 Sum_probs=252.4
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhh-hhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPI 80 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (427)
|+++......+..+.......+.+|. +++++|.|+.+.|++.+.+.+++.++++++|+++||+|||++++.+..+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34455555555666666666677776 55679999999999999999999999999999999999999999988876543
Q ss_pred H---HHHhchhhHH-HHHHHHHHHhhccccc-cchHHHHHcccCc--cccccchhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 014301 81 V---LSASLVSSPQ-SFILVRFLVGFCLANF-VANQFWMSSMFSG--CVVGLANGVSAGWANMGAGVSQLLMPLIFTAIT 153 (427)
Q Consensus 81 ~---~~~~~~~~~~-~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~ 153 (427)
. ....+++... .+...+.+.|++.+.. ......+.++.++ ++|+...+......++|..+++.++..+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--- 163 (417)
T 2cfq_A 87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--- 163 (417)
T ss_dssp HHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 2 2223333221 2445667777766643 4444444555443 456777788777778888777777666543
Q ss_pred hccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHH
Q 014301 154 SLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFG 233 (427)
Q Consensus 154 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (427)
.+||+.|++.++..++..+..++.+|+++++.+++ ++++++++ +...+..++.+|+|+++...+..+....
T Consensus 164 -------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T 2cfq_A 164 -------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA-NAVGANHS-AFSLKLALELFRQPKLWFLSLYVIGVSC 234 (417)
T ss_dssp -------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSS-SSSSSCCC-CCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------hchhHHHHHHHHHHHHHHHHHHHcCcccccccccc-cccccccc-cccHHHHHHHhcCCchhhHHHHHHHHHH
Confidence 37999998877665444443333443332211111 10000111 1122345677889998877766555555
Q ss_pred HHhhhhhhhcchhhhccCC---cHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHh
Q 014301 234 VELTTDNIIAQYFYDRFGV---NLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLG 310 (427)
Q Consensus 234 ~~~~~~~~~~~~l~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (427)
.......++|.|+.+.++. +....+...+...+..+++.++.+++.||++||+ .+..+..+..+......
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~l~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 235 TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-------ALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-------HHHHHHHHHHHHHHHHH
Confidence 5555666788887665542 2445577777778888889999999999999986 44445555555555555
Q ss_pred hccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeeh-hcchhhhhhHHHHHHH-hhcccccchhHHHHHHH
Q 014301 311 RVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGM-TGSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGL 387 (427)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~-~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 387 (427)
..++.+...+...+.+++.+...+....+.+| .|++.||++.|. .+....+|+.++|.+. ...+..++...|...++
T Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~ 387 (417)
T 2cfq_A 308 FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp TCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence 55566655555566666666556666677775 488889999998 4888889999999998 55556678888888887
Q ss_pred HHHHHHHHHHh
Q 014301 388 MMIVCTLPVSL 398 (427)
Q Consensus 388 ~~~~~~~~~~~ 398 (427)
+.+++.+....
T Consensus 388 ~~l~~~~~~~~ 398 (417)
T 2cfq_A 388 VALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 77777665443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-30 Score=247.09 Aligned_cols=360 Identities=15% Similarity=0.090 Sum_probs=227.2
Q ss_pred hhHHHHHHHHHhHhhhccccchhh-hhhhhcC------CCcchhhHHHHHHHHHHHHhhcccccccccc-CCchHHHHHH
Q 014301 3 AFHLAWLSLFSCFFSTFSIPPLIP-IIRHDLN------LTDTDVGTAGMASFLGSIFSRLAMGPVCDLL-GPRVASATLS 74 (427)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~------~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~~~~~~ 74 (427)
.++..++..++..+..+...+.+| .+.+++| .|+.+.+++.+.+.++..+++++.|+++||+ |||+++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~ 92 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS 92 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344556666666666665555555 4677899 9999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHhchh-hHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhh---hhhhhhhhHHHHHHHHHHHH
Q 014301 75 LITAPIVLSASLVS-SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGV---SAGWANMGAGVSQLLMPLIF 149 (427)
Q Consensus 75 ~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~ 149 (427)
++.+++.++.++++ +++.+++.|++.|++.+.. +...+++.|++|+++|+++.+. .+...++|..+++.+++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 93 LIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999999999987 8889999999999999877666 77777777777776666555
Q ss_pred HHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccc-ccc---------hh--hhhh-----------
Q 014301 150 TAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFK-KTK---------TE--SREE----------- 206 (427)
Q Consensus 150 ~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~--~~~~----------- 206 (427)
+ ..+||+.|++.++..++..+..++..++.+++++++.+ .+. ++ +.+.
T Consensus 173 ~---------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (524)
T 2xut_A 173 K---------NFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGV 243 (524)
T ss_dssp H---------TSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHH
T ss_pred c---------cccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhh
Confidence 4 67999999998887766555544433322111111000 000 00 0000
Q ss_pred --------------------------------hhHHHHH--------hhhcCchHHHHHHHHHHHHHHHhhhhhhhcchh
Q 014301 207 --------------------------------KFVHVLF--------NGLKNYRGWILGLTYGFCFGVELTTDNIIAQYF 246 (427)
Q Consensus 207 --------------------------------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (427)
++.+..+ +..+.++.+..................+.+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (524)
T 2xut_A 244 SAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWI 323 (524)
T ss_dssp HHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHH
T ss_pred hhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Confidence 0000000 001112222222211111111111111222222
Q ss_pred hhc--cCCcH-HHHHHHHHHHHHhhhcccccchhhh----hhhccccccchhHHHHHHHHHHHHHHHHHHhhc-------
Q 014301 247 YDR--FGVNL-QVAGTIAASFGMANLFSRPMGGVIS----DRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV------- 312 (427)
Q Consensus 247 ~~~--~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 312 (427)
... .+.+. ...+.......++.+++..+.+++. ||.++|... ...+..+..+..+.+..+...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 400 (524)
T 2xut_A 324 LQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA---LRKMGAGIAITGLSWIVVGTIQLMMDGG 400 (524)
T ss_dssp HHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CC---HHHHHTHHHHHHHHHHTTTTTTTTTTTT
T ss_pred HhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111 12211 1244554545555556666666653 343332211 123334444455544444432
Q ss_pred --cchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH-hhcc
Q 014301 313 --NSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL-FSGS 374 (427)
Q Consensus 313 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~ 374 (427)
.+.+...+..++.+++.+...+...++..+ .|++.||+++|+.+...++|+.++|.+. ...+
T Consensus 401 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 401 SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 255566677888899988888888888885 5888999999999999999999999998 4444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=137.21 Aligned_cols=174 Identities=13% Similarity=0.050 Sum_probs=146.7
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhcchhhhc-----cCCcHHHHHHHHHHHHHhhhcccccchhhhhh-hccccccchhH
Q 014301 219 YRGWILGLTYGFCFGVELTTDNIIAQYFYDR-----FGVNLQVAGTIAASFGMANLFSRPMGGVISDR-MGRRFGIRGRL 292 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~ 292 (427)
+.++...+..++....++....+++.|+++. +|.++.+.+++.+...++..++.++.|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 4566677777777778888889999999887 89999999999999999999999999999999 89997
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCc--ceeeeehhcchhhhhhHHHHHH
Q 014301 293 WGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRS--LGVISGMTGSGGTVGAVVTQML 369 (427)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~--~g~~~g~~~~~~~~g~~~~~~~ 369 (427)
.+..+..+..+........++.+...+..++.|++.+...+...++..|. |+++ |+.+.+..+...++|..++|.+
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 87 -AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 66677777777777777788888888889999999999999998888864 7777 7778888889999999999999
Q ss_pred H-hhcccccchhHHHHHHHHHHHHHHHHHhh
Q 014301 370 L-FSGSKFSKQTSISVMGLMMIVCTLPVSLI 399 (427)
Q Consensus 370 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (427)
. ...+..+|+..|...++..+++.+.....
T Consensus 166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 66677889999988877776666655444
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=134.71 Aligned_cols=172 Identities=13% Similarity=0.149 Sum_probs=140.2
Q ss_pred HHHHHHHHHhHhhhccccchhhhhhhh-cCCCcchhhHHHHHHHHHHHHhhcccccccccc--CCchHHHHHHHHHH-HH
Q 014301 5 HLAWLSLFSCFFSTFSIPPLIPIIRHD-LNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLL--GPRVASATLSLITA-PI 80 (427)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~ 80 (427)
+...+..++............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 334444455555555566777777666 899999999999999999999999999999999 99999988887766 77
Q ss_pred HHHHhch--hhHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhh-hHHHHHHHHHHHHHHHhhcc
Q 014301 81 VLSASLV--SSPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANM-GAGVSQLLMPLIFTAITSLN 156 (427)
Q Consensus 81 ~~~~~~~--~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~l~~~~ 156 (427)
.++..+. ++.+.+.+..++.|++.+.. +....++.|.+|+++|+++.++.+...++ |..+++.+.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~------ 408 (451)
T 1pw4_A 335 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD------ 408 (451)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 7777766 47888888889999988766 77778889999999999999999998888 88888877776665
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHc
Q 014301 157 VGTHTAWRLAFIVPSTFQALTAIMVLIYG 185 (427)
Q Consensus 157 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 185 (427)
..+|+..|++.++..++..+..++..
T Consensus 409 ---~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 409 ---FFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp ---SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999998888887776666554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.4e-14 Score=130.94 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHH
Q 014301 224 LGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAG 303 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 303 (427)
..+..+.............|. +.+++|.++.+.+++.+...++..++.++.|+++||+|||+ .+..+..+..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-------~l~~~~~~~~ 102 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA-------GIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH-------HHHHHHHHHH
Confidence 333444444444445555555 55667999999999999999999999999999999999997 5556666666
Q ss_pred HHHHHH---hhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhc-cccc
Q 014301 304 LLCVLL---GRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSG-SKFS 377 (427)
Q Consensus 304 ~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~-~~~~ 377 (427)
+..... ...++.+..++..++.|++.+...+...++..|. |+++|+++.++.+....+|..++|.+. ... +..+
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 665555 6778899999999999999999999999988865 888999999999999999999999998 443 4433
Q ss_pred -------------------------chhHHHHHHHHHHHHHHHHHh
Q 014301 378 -------------------------KQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 378 -------------------------~~~~~~~~~~~~~~~~~~~~~ 398 (427)
|++.+...++..++..+....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777877666665555544433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.2e-13 Score=128.96 Aligned_cols=173 Identities=14% Similarity=0.081 Sum_probs=142.5
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhcchhhhccC------CcHHHHHHHHHHHHHhhhcccccchhhhhhh-ccccccchh
Q 014301 219 YRGWILGLTYGFCFGVELTTDNIIAQYFYDRFG------VNLQVAGTIAASFGMANLFSRPMGGVISDRM-GRRFGIRGR 291 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~ 291 (427)
|.++...+..++.....+....+++.|+.+++| .++.+.+++.+...++..++.++.|+++||+ |||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~----- 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN----- 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----
Confidence 566777778888888888888999999988889 9999999999999999999999999999999 9987
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeeh---hcchhhhhhHHH
Q 014301 292 LWGLWAVQTAAGLLCVLLGRVN-SLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGM---TGSGGTVGAVVT 366 (427)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~---~~~~~~~g~~~~ 366 (427)
.+..+..+..+........+ +.+..++..++.|++.+...+...++..+ .|+++|+++.+. .+...++|..++
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 87 --TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666777 88888888899999999999999888885 478888776666 888899999999
Q ss_pred HHHH-hhcccccchhHHHHHHHHHHHHHHHHHh
Q 014301 367 QMLL-FSGSKFSKQTSISVMGLMMIVCTLPVSL 398 (427)
Q Consensus 367 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (427)
|.+. ...+..+|+..|.+.+++.+++.+....
T Consensus 165 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 165 SLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9888 6666778999988877776665555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-13 Score=122.76 Aligned_cols=163 Identities=13% Similarity=0.069 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHH
Q 014301 224 LGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAG 303 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 303 (427)
+.+..++...........+|.+. +++|.++.+.++..+...++..++.++.|+++||+|||+ .+..+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~ 76 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP-------VILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-------hHHHHHHHHH
Confidence 44444555555556666677655 557999999999999999999999999999999999998 4445555555
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhhhhhhhhhhccccc-CcCcceeeeehhcchhhhhhHHHHHHH-hhcccccchhH
Q 014301 304 LLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFV-SKRSLGVISGMTGSGGTVGAVVTQMLL-FSGSKFSKQTS 381 (427)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 381 (427)
+........++.+...+..++.|++.+...+...++..|. |+++|+++++..+....+|..++|.+. ...+..+|+..
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 156 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRAC 156 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHH
Confidence 5556666667888888888999999998889888888865 788999999999999999999999998 66676788888
Q ss_pred HHHHHHHHHHHHH
Q 014301 382 ISVMGLMMIVCTL 394 (427)
Q Consensus 382 ~~~~~~~~~~~~~ 394 (427)
+...++..++..+
T Consensus 157 ~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 157 YLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 8777766655544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-13 Score=124.79 Aligned_cols=142 Identities=11% Similarity=0.061 Sum_probs=116.7
Q ss_pred cchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-cchHHHH
Q 014301 36 DTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF-VANQFWM 114 (427)
Q Consensus 36 ~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~i 114 (427)
..+.++..++..++..++.++.|+++||+|||+.+..+..+.+++.+..++.++.+.+++..++.+++.+.. +....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888888899999999999999999999999999888888888888888888888888888887655 6667888
Q ss_pred HcccCccccccchhh-hhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcC
Q 014301 115 SSMFSGCVVGLANGV-SAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQ 186 (427)
Q Consensus 115 ~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~ 186 (427)
.|.+|++.|+++.+. ++....+|..++|.+++.+.+ ..+++..|.+.++..++..+..+...+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~---------~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE---------SIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH---------HSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH---------hcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999888 477777888888877776654 568889999888887777666555444
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.2e-11 Score=112.18 Aligned_cols=168 Identities=10% Similarity=0.032 Sum_probs=120.2
Q ss_pred ccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhch----hhHHHHH
Q 014301 19 FSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLV----SSPQSFI 94 (427)
Q Consensus 19 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~l~ 94 (427)
.......|.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+.. .+.+..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 294 NVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 334555677888888888888888888888899999999999999999999999988877777665442 1122222
Q ss_pred HHH--HHHhhccccccchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHH
Q 014301 95 LVR--FLVGFCLANFVANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPST 172 (427)
Q Consensus 95 ~~r--~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~ 172 (427)
+.- +..+.+.+..+....+.+|.+|.+.|++++++......+|..+++.+.|.+...... ....++...|++.++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~---~~~~~~~~~~~i~~~ 450 (491)
T 4gc0_A 374 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL---VAHFHNGFSYWIYGC 450 (491)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH---HHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhHHHHHHHH
Confidence 222 222333333355667889999999999999999999999998888887766432111 003466778888888
Q ss_pred HHHHHHHHHHHHcCCCC
Q 014301 173 FQALTAIMVLIYGQDLP 189 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~ 189 (427)
++++..+..+++.||.+
T Consensus 451 ~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 451 MGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHheecCCC
Confidence 88888877766654433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 427 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 5e-12 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 1e-05 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.002 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 64.7 bits (156), Expect = 5e-12
Identities = 63/409 (15%), Positives = 122/409 (29%), Gaps = 13/409 (3%)
Query: 2 RAFHLAWLSLFSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVC 61
+ F + + + + +P + + + D+G A + FS+ MG V
Sbjct: 25 QIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVS 83
Query: 62 DLLGPR----VASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCL-ANFVANQFWMSS 116
D PR + + + SS ++ FL G+ + M
Sbjct: 84 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 143
Query: 117 MFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQAL 176
+S G V N+G G+ LL L + + A +V A+
Sbjct: 144 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203
Query: 177 TAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVH---VLFNGLKNYRGWILGLTYGFCFG 233
G ++ E E++ + L N W + + F +
Sbjct: 204 MRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL 263
Query: 234 VELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLW 293
+ + Y + L + + A + + G +SD++ R RG
Sbjct: 264 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN--RGATG 321
Query: 294 GLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVP-FVSKRSLGVIS 352
+ + + + ++ M V + L K++ G +
Sbjct: 322 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 381
Query: 353 GMTGSGGTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLPVSLIYF 401
G TG G +G V + G +M+ L V L+
Sbjct: 382 GFTGLFGYLGGSVAASAIV-GYTVDFFGWDGGFMVMIGGSILAVILLIV 429
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 44.8 bits (104), Expect = 1e-05
Identities = 38/394 (9%), Positives = 88/394 (22%), Gaps = 7/394 (1%)
Query: 2 RAFHLAWLSLFSCFFSTFSIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPV 60
F + L F FF + P PI + +++ +D G A L S+ + G +
Sbjct: 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLL 66
Query: 61 CDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANFVANQFWMSSMFSG 120
D LG R + + + + ++ F +
Sbjct: 67 SDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAV- 125
Query: 121 CVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIM 180
+ + A + + + +I + + + +
Sbjct: 126 EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185
Query: 181 VLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVELTTDN 240
+ F L L Y +
Sbjct: 186 FA-----KTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240
Query: 241 IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQT 300
F+ F + + + + R G + L + +
Sbjct: 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMS 300
Query: 301 AAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPFVSKRSLGVISGMTGSGGT 360
+ + + F+ V + +
Sbjct: 301 VRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL 360
Query: 361 VGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTL 394
++ + Q + V+GL+ + TL
Sbjct: 361 AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTL 394
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (86), Expect = 0.002
Identities = 30/187 (16%), Positives = 65/187 (34%)
Query: 216 LKNYRGWILGLTYGFCFGVELTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMG 275
LKN W+ GL + F F + + +D ++ G I A+ + +L +P+
Sbjct: 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLF 63
Query: 276 GVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRVNSLWGSVLVMCVFSVFVQAAGGL 335
G++SD++G R + + G+ + + ++ +V ++ F AG
Sbjct: 64 GLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAP 123
Query: 336 TFGVVPFVSKRSLGVISGMTGSGGTVGAVVTQMLLFSGSKFSKQTSISVMGLMMIVCTLP 395
R G G VG + ++ + Q + ++ +
Sbjct: 124 AVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183
Query: 396 VSLIYFP 402
+
Sbjct: 184 LFFAKTD 190
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.47 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.42 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-39 Score=306.05 Aligned_cols=377 Identities=18% Similarity=0.157 Sum_probs=294.7
Q ss_pred HHhHhhhccccchhhhhhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchh---
Q 014301 12 FSCFFSTFSIPPLIPIIRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVS--- 88 (427)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--- 88 (427)
+...++...++.+.|.++ |+|+|++|.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus 35 ~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 113 (447)
T d1pw4a_ 35 AAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 113 (447)
T ss_dssp HHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh
Confidence 333444556788888776 5899999999999999999999999999999999999999999999999999888764
Q ss_pred -hHHHHHHHHHHHhhccccc-cchHHHHHcccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHH
Q 014301 89 -SPQSFILVRFLVGFCLANF-VANQFWMSSMFSGCVVGLANGVSAGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLA 166 (427)
Q Consensus 89 -~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~ 166 (427)
+++.+++.|++.|++.+.. ++..+++.|++|+++|++++++.+...++|..+++.++..+... ..+||+.
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~--------~~~w~~~ 185 (447)
T d1pw4a_ 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW--------FNDWHAA 185 (447)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH--------TCCSTTC
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh--------hhccccc
Confidence 7789999999999999976 88889999999999999999999999999988888776655542 4589999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCcccccccc-----------hhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHHHH
Q 014301 167 FIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTK-----------TESREEKFVHVLFNGLKNYRGWILGLTYGFCFGVE 235 (427)
Q Consensus 167 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (427)
|++.+++.++..+..+...++.|++...+..++. .+++........++.+++|.++......++.....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (447)
T d1pw4a_ 186 LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR 265 (447)
T ss_dssp THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhh
Confidence 9999999888888888887776654322111110 00111222344567888999999999888888899
Q ss_pred hhhhhhhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh--cc
Q 014301 236 LTTDNIIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGR--VN 313 (427)
Q Consensus 236 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 313 (427)
.....+.|.|+.+.++.+..+.+.......+..+++.++.|++.||.+|++ +.........+.......... ..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (447)
T d1pw4a_ 266 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN----RGATGVFFMTLVTIATIVYWMNPAG 341 (447)
T ss_dssp HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC----HHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred hcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc----cccccchhHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999876 222222222222222222222 33
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhh-hHHHHHHH-hhcccccchhHHHHHHHHHH
Q 014301 314 SLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVG-AVVTQMLL-FSGSKFSKQTSISVMGLMMI 390 (427)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 390 (427)
+.+...+..++.|++.+...+....+..| .|++.||++.|+.+..++++ ..++|.+. ...+..++...+....++.+
T Consensus 342 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 421 (447)
T d1pw4a_ 342 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 421 (447)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 56666777777888877777777777775 47888999999999988875 56677777 77778888888888877777
Q ss_pred HHHHHHHhhcc
Q 014301 391 VCTLPVSLIYF 401 (427)
Q Consensus 391 ~~~~~~~~~~~ 401 (427)
++.++......
T Consensus 422 ~~~~~~~~~~~ 432 (447)
T d1pw4a_ 422 LAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.7e-31 Score=247.82 Aligned_cols=381 Identities=15% Similarity=0.082 Sum_probs=268.1
Q ss_pred hhhHHHHHHHHHhHhhhccccchhhh-hhhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHH
Q 014301 2 RAFHLAWLSLFSCFFSTFSIPPLIPI-IRHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPI 80 (427)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (427)
|+++...+..++.++......+.+|. +++++|+|++++|++.+++.++..++++++|+++||+||||+++.+.....++
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~ 86 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 56777888888888888888888886 67789999999999999999999999999999999999999999999999988
Q ss_pred HHHHhchhhHHHH----HHHHHHHhhccccc-cchHHHHHcccCc--cccccchhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 014301 81 VLSASLVSSPQSF----ILVRFLVGFCLANF-VANQFWMSSMFSG--CVVGLANGVSAGWANMGAGVSQLLMPLIFTAIT 153 (427)
Q Consensus 81 ~~~~~~~~~~~~l----~~~r~l~G~~~~~~-~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~l~ 153 (427)
..+..+.++.... ++.+.+.+.+.+.. ........+..++ +++.+..+........+..+++.+++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 163 (417)
T d1pv7a_ 87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--- 163 (417)
T ss_dssp HHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc---
Confidence 8888887766554 44455555555543 3333333333332 345566677767777777777777666653
Q ss_pred hccCCcccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccccchhhhhhhhHHHHHhhhcCchHHHHHHHHHHHHH
Q 014301 154 SLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQDLPSGNYKEFKKTKTESREEKFVHVLFNGLKNYRGWILGLTYGFCFG 233 (427)
Q Consensus 154 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (427)
.+|+..+........+..+..++..++.+++++++.+++++++ +......++..+++..+...........
T Consensus 164 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T d1pv7a_ 164 -------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS--AFSLKLALELFRQPKLWFLSLYVIGVSC 234 (417)
T ss_dssp -------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCC--CCCHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred -------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcc--cccccccccccccccccchhhhhHHHHH
Confidence 4666666666666666555555555444433322221111111 1112223334444444444433333333
Q ss_pred HHhhhhh---hhcchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHh
Q 014301 234 VELTTDN---IIAQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLG 310 (427)
Q Consensus 234 ~~~~~~~---~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (427)
....... ....+..+..+.+....+.......++..++..+.+++.||.++|+ ....+..+..+......
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~-------~~~~~~~~~~~~~~~~~ 307 (417)
T d1pv7a_ 235 TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-------ALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccccc-------chhhhHHHHHHhhhccc
Confidence 3222222 2222333334556677778888888899999999999999999987 66677777777777788
Q ss_pred hccchHHHHHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehh-cchhhhhhHHHHHHH-hhcccccchhHHHHHHH
Q 014301 311 RVNSLWGSVLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMT-GSGGTVGAVVTQMLL-FSGSKFSKQTSISVMGL 387 (427)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 387 (427)
..++.+...+..++.+++.+...+...++.++ .|++.|+++.|.. +....+|..++|.+. ...+..+++..+.+.++
T Consensus 308 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~ 387 (417)
T d1pv7a_ 308 FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 88888888888899999999999998888885 5888999999975 556679999999988 77788899999988888
Q ss_pred HHHHHHHHHHhhcc
Q 014301 388 MMIVCTLPVSLIYF 401 (427)
Q Consensus 388 ~~~~~~~~~~~~~~ 401 (427)
+.++..++..+..+
T Consensus 388 ~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 388 VALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhc
Confidence 88777776655543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=6.6e-14 Score=129.91 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=118.0
Q ss_pred cchhhhccCCcHHHHHHHHHHHHHhhhcccccchhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhc----cchHHH
Q 014301 243 AQYFYDRFGVNLQVAGTIAASFGMANLFSRPMGGVISDRMGRRFGIRGRLWGLWAVQTAAGLLCVLLGRV----NSLWGS 318 (427)
Q Consensus 243 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 318 (427)
.++++| .|+|..+.+++.+...++..++.++.|+++||+|||+ .+..+..+..+........ ++.+..
T Consensus 48 ~p~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (447)
T d1pw4a_ 48 MPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-------FLPAGLILAAAVMLFMGFVPWATSSIAVM 119 (447)
T ss_dssp HHHTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-------HHHHHHHHHHHHHHHHHHCHHHHSSSSHH
T ss_pred HHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-------HHHHHHHHHHHHHhhccccchhhhhHHHH
Confidence 345555 6999999999999999999999999999999999997 5555555555555444433 366677
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccc-cCcCcceeeeehhcchhhhhhHHHHHHH--hhcccccchhHHHHHHHHHHHHHHH
Q 014301 319 VLVMCVFSVFVQAAGGLTFGVVPF-VSKRSLGVISGMTGSGGTVGAVVTQMLL--FSGSKFSKQTSISVMGLMMIVCTLP 395 (427)
Q Consensus 319 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (427)
.+..++.|++.+...+....+..+ .|+++|++++|+.+....+|..++|.+. ......+|+..+...+.+.++..+.
T Consensus 120 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 199 (447)
T d1pw4a_ 120 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF 199 (447)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHH
Confidence 788888999998888888888885 5788899999999999999999999877 3444567888887777776666665
Q ss_pred HHhhcc
Q 014301 396 VSLIYF 401 (427)
Q Consensus 396 ~~~~~~ 401 (427)
.+...+
T Consensus 200 ~~~~~~ 205 (447)
T d1pw4a_ 200 AFAMMR 205 (447)
T ss_dssp HHHHCC
T ss_pred HHHhcc
Confidence 555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=2.2e-13 Score=124.36 Aligned_cols=150 Identities=11% Similarity=0.042 Sum_probs=127.2
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhhccccc-
Q 014301 29 RHDLNLTDTDVGTAGMASFLGSIFSRLAMGPVCDLLGPRVASATLSLITAPIVLSASLVSSPQSFILVRFLVGFCLANF- 107 (427)
Q Consensus 29 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~- 107 (427)
.++.+.+....+...+...++..++..+.+++.||+|+|+.+..+..+.+++.+...+.++.+.+++..++.|++.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHH
Confidence 3444556677788889999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cchHHHHHcccCccccccchhhh-hhhhhhhHHHHHHHHHHHHHHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHcC
Q 014301 108 VANQFWMSSMFSGCVVGLANGVS-AGWANMGAGVSQLLMPLIFTAITSLNVGTHTAWRLAFIVPSTFQALTAIMVLIYGQ 186 (427)
Q Consensus 108 ~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~ 186 (427)
+....++.|.+|+++|+++.++. +....+|..+++.+.+.+.+ ..||+..|++.+++.++..++..+..+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE---------SIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---------HHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88889999999999999999975 44556777777766666655 679999999999888877776666654
Q ss_pred C
Q 014301 187 D 187 (427)
Q Consensus 187 ~ 187 (427)
+
T Consensus 402 ~ 402 (417)
T d1pv7a_ 402 G 402 (417)
T ss_dssp C
T ss_pred C
Confidence 3
|