Citrus Sinensis ID: 014304
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | 2.2.26 [Sep-21-2011] | |||||||
| Q940M4 | 500 | Organic cation/carnitine | yes | no | 0.925 | 0.79 | 0.506 | 3e-97 | |
| Q2XWK0 | 548 | Synaptic vesicle 2-relate | N/A | no | 0.899 | 0.700 | 0.321 | 3e-46 | |
| Q5R5T8 | 548 | Synaptic vesicle 2-relate | yes | no | 0.906 | 0.706 | 0.305 | 1e-45 | |
| Q8N4V2 | 548 | Synaptic vesicle 2-relate | yes | no | 0.906 | 0.706 | 0.305 | 1e-45 | |
| Q1JP63 | 548 | Synaptic vesicle 2-relate | yes | no | 0.906 | 0.706 | 0.305 | 3e-45 | |
| P30638 | 520 | Putative transporter ZK63 | yes | no | 0.852 | 0.7 | 0.306 | 2e-44 | |
| Q9Z2I7 | 548 | Synaptic vesicle 2-relate | yes | no | 0.906 | 0.706 | 0.305 | 4e-42 | |
| Q8BFT9 | 548 | Synaptic vesicle 2-relate | yes | no | 0.906 | 0.706 | 0.307 | 5e-42 | |
| Q1LVS8 | 506 | Putative transporter SVOP | no | no | 0.805 | 0.679 | 0.323 | 2e-41 | |
| Q6PDF3 | 494 | Putative transporter SVOP | no | no | 0.800 | 0.692 | 0.329 | 7e-41 |
| >sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 355 bits (912), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 206/407 (50%), Positives = 271/407 (66%), Gaps = 12/407 (2%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GF+ A+VT AG LS+FSPNY+ LI LRCLVG+GLG G V SW+LEF+P +RG W
Sbjct: 90 RKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTW 149
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW++MPRL WRWLL SS+PS +LL F + ESPRYL L+G
Sbjct: 150 MVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQG 209
Query: 151 RTAEAHRALEKIAQVNKTKLPNG-KLVARRSTLPTGERAPPELVHLLSSNGGNKT----- 204
R AEA LEKIA++NKT+LP G + L + P E HLL + +
Sbjct: 210 RKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSK 269
Query: 205 ----TEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP 260
+ + G SL L L S L + T+LLW++ FGN+FAYY VVLL +EL++ RC
Sbjct: 270 IVLKADKEPGFSL-LALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPT 328
Query: 261 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY 320
+ D N Y D FI S AE PGLL++A +VD GRK S+ M C+FLLPL+++
Sbjct: 329 EKQLRNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSH 387
Query: 321 QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 380
QS +TT LLFG R+C+ AFTV IYA EIYPT+VR+TG G +++GRIGG++CPLVAV
Sbjct: 388 QSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAV 447
Query: 381 ALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTSD 427
LV CHQ AV+L VVI+ S + V L PFET G++L+D++ + +
Sbjct: 448 GLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISASKE 494
|
High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 140/435 (32%), Positives = 212/435 (48%), Gaps = 51/435 (11%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V I M LW N+ R G + T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P +R +++ FW +G+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLILSALP-LMLFAILCFWLPESARYEVLSGNQEKALATLKRIATENGAPMPLGKLIVS 297
Query: 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSF 238
R + GK LFS + TT+LLW + F N+F
Sbjct: 298 R-----------------------QEDRGK-----IRDLFSPQFRCTTLLLWFIWFSNAF 329
Query: 239 AYYAVVLLISELSSLDTRCR-SPLMFSHHPQ--------DANLYIDEFITSLAEIPGLLL 289
+YY +VLL +EL C S + P+ Y D T+L+E PGLL+
Sbjct: 330 SYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLV 389
Query: 290 AAILVDTAGRKLSITI---MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLI 346
++D GRK ++ I +F+ S L L V N+LT LF AR + G F + +
Sbjct: 390 TLWIIDRVGRKKTMAICFIIFSFSALLLFLCVG--RNVLTV-FLFIARAFISGGFQAAYV 446
Query: 347 YAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 406
Y E+YPT+ R+ G G + M R+G ++ P +A ++ + +T +V ++ ++ S
Sbjct: 447 YTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSIYLTVLVYSGCCVLAAVASC 506
Query: 407 MLIPFETKGQELSDT 421
L P ETKG+ L ++
Sbjct: 507 FL-PIETKGRGLQES 520
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Xenopus laevis (taxid: 8355) |
| >sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 206/432 (47%), Gaps = 45/432 (10%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179
WLL LS++P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 239 WLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
Query: 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFA 239
+ GK LF+ TT+LLW + F N+F+
Sbjct: 299 -----------------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFS 330
Query: 240 YYAVVLLISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 290
YY +VLL +EL SS + + Y+D T+L+E PG+L+
Sbjct: 331 YYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVT 390
Query: 291 AILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 349
++D GRK ++ + F + S LL + N+LT LLF AR + G F + +Y
Sbjct: 391 LWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIARAFISGGFQAAYVYTP 449
Query: 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409
E+YPT+ R+ G G + M R+G ++ P +A ++ + +T V ++ ++ S L
Sbjct: 450 EVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL- 508
Query: 410 PFETKGQELSDT 421
P ETKG+ L ++
Sbjct: 509 PIETKGRGLQES 520
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Pongo abelii (taxid: 9601) |
| >sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 206/432 (47%), Gaps = 45/432 (10%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179
WLL LS++P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 239 WLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
Query: 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFA 239
+ GK LF+ TT+LLW + F N+F+
Sbjct: 299 -----------------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFS 330
Query: 240 YYAVVLLISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 290
YY +VLL +EL SS + + Y+D T+L+E PG+L+
Sbjct: 331 YYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVT 390
Query: 291 AILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 349
++D GRK ++ + F + S LL + N+LT LLF AR + G F + +Y
Sbjct: 391 LWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIARAFISGGFQAAYVYTP 449
Query: 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409
E+YPT+ R+ G G + M R+G ++ P +A ++ + +T V ++ ++ S L
Sbjct: 450 EVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL- 508
Query: 410 PFETKGQELSDT 421
P ETKG+ L ++
Sbjct: 509 PIETKGRGLQES 520
|
Homo sapiens (taxid: 9606) |
| >sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 206/432 (47%), Gaps = 45/432 (10%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179
WLL LS++P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 239 WLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
Query: 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFA 239
+ GK LF+ TT+LLW + F N+F+
Sbjct: 299 -----------------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFS 330
Query: 240 YYAVVLLISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 290
YY +VLL +EL SS + + Y+D T+L+E PG+L+
Sbjct: 331 YYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVT 390
Query: 291 AILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 349
++D GRK ++ + F + S LL + N+LT LLF AR + G F + +Y
Sbjct: 391 LWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTL-LLFIARAFISGGFQAAYVYTP 449
Query: 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409
E+YPT+ R+ G G + M R+G ++ P +A ++ + +T V ++ ++ S L
Sbjct: 450 EVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL- 508
Query: 410 PFETKGQELSDT 421
P ETKG+ L ++
Sbjct: 509 PIETKGRGLQES 520
|
Bos taurus (taxid: 9913) |
| >sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 195/398 (48%), Gaps = 34/398 (8%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R G LV G++S SP++ L+ R L G G+G ++ + EF+P + R
Sbjct: 149 RKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTGFGIGGVPQSVTLYAEFLPTAQRAKC 208
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
+V+ SFW IG+V EA+ A+ +M WR L+ LSS+P I + PES R+ G
Sbjct: 209 VVLIESFWAIGAVFEALLAYFVMESFGWRALMFLSSLPLGIFAVASFWLPESARFDMASG 268
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 210
A L+ A++N+ +LP G+LV S+ G + ++ +LLS +
Sbjct: 269 HPERALETLQAAARMNRVQLPTGRLV---SSTKAGSESRGDIANLLSPD----------- 314
Query: 211 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH----- 265
L +TTILLW + +F+YY +VL + L C L FS+
Sbjct: 315 -----------LRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGL-FSNGTQME 362
Query: 266 --HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN 323
P + Y D T+LAE PGL++ ++++ GRK ++ + + + +F L
Sbjct: 363 VCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDR 422
Query: 324 ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383
T L+F AR + GAF + +Y E+YPT++R+ G G +AM RIG +V P +A
Sbjct: 423 FTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIAQVAS 482
Query: 384 ANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
+ + I+ I S+ L P ETKG+++ D+
Sbjct: 483 EKSLSLPIGIYGTAAILGLIASLSL-PIETKGRQMMDS 519
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 204/432 (47%), Gaps = 45/432 (10%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V I M LW N+ + G T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179
WLL LS+ P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 239 WLLLLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
Query: 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFA 239
+ GK LF+ TT+LLW + F N+F+
Sbjct: 299 -----------------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFS 330
Query: 240 YYAVVLLISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 290
YY +VLL +EL SS + + Y+D T+L+E PG+L+
Sbjct: 331 YYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVT 390
Query: 291 AILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 349
++D GRK ++ + F + S LL + N+LT LLF AR + G F + +Y
Sbjct: 391 LWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTL-LLFIARAFISGGFQAAYVYTP 449
Query: 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409
E+YPT+ R+ G G + M R+G ++ P +A ++ + +T V ++ ++ S L
Sbjct: 450 EVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL- 508
Query: 410 PFETKGQELSDT 421
P ETKG+ L ++
Sbjct: 509 PIETKGRALQES 520
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 204/432 (47%), Gaps = 45/432 (10%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V I M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179
WLL LS+ P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 239 WLLLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298
Query: 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFA 239
+ GK LF+ TT+LLW + F N+F+
Sbjct: 299 -----------------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFS 330
Query: 240 YYAVVLLISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA 290
YY +VLL +EL SS + + Y+D T+L+E PG+L+
Sbjct: 331 YYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVT 390
Query: 291 AILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 349
++D GRK ++ + F + S LL + N+LT LLF AR + G F + +Y
Sbjct: 391 LWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTL-LLFIARAFISGGFQAAYVYTP 449
Query: 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409
E+YPT+ R+ G G + M R+G ++ P +A ++ + +T V ++ + S L
Sbjct: 450 EVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAGVASCFL- 508
Query: 410 PFETKGQELSDT 421
P ETKG+ L ++
Sbjct: 509 PIETKGRALQES 520
|
Mus musculus (taxid: 10090) |
| >sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 181/386 (46%), Gaps = 42/386 (10%)
Query: 46 LLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105
L+SFS +Y I LRC+VG G+ + EF+P R + + S FW +GS+
Sbjct: 146 FLTSFSTSYGWFIFLRCMVGCGVAATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSILI 205
Query: 106 AIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQV 165
+ ++P + WRW++ S IPS +L+ F PES R+ G A L++IA++
Sbjct: 206 IVLGMTVVPTMGWRWMIRFSVIPSLVLIGLFMFIPESARFQVSAGNIQGAMSTLKRIAKM 265
Query: 166 NKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLART 225
N NG LP GE PE+ + GN T L SS RT
Sbjct: 266 N-----NG-------VLPEGELREPEV-----TERGNAVT-----------LISSAFRRT 297
Query: 226 TILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHH-------------PQDANL 272
++LLW F SF+YY VL SEL + C + H P +++
Sbjct: 298 SLLLWYSWFVASFSYYGSVLSSSELLEKNLLCVTDPDLEHQIKHIQEETLCYCIPFNSDD 357
Query: 273 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFG 332
Y I+ L E+ + L IL++ GRK S+ I+ LS F + + + + T LLF
Sbjct: 358 YQTLLISCLGEVALIPLNIILLNIVGRKYSMVILLLLSAFFFMLVNICTTMLGFTILLFL 417
Query: 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAV 392
R V F V IY AE+YPTSVRS G G + RIGGM+ P +A L++ +
Sbjct: 418 LRSVVSMNFNVVYIYTAEVYPTSVRSIGMGFCTSFSRIGGMIAPFIAQVLMSKSVILALS 477
Query: 393 VLLVVVIVTSILSVMLIPFETKGQEL 418
I+ +I V +P ET+G+ L
Sbjct: 478 PFATACIICAI-GVFFLPIETRGRAL 502
|
Danio rerio (taxid: 7955) |
| >sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 131/397 (32%), Positives = 189/397 (47%), Gaps = 55/397 (13%)
Query: 46 LLSSFSPNYITLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104
LL+SFSP+YI + LR +VG G+ SGH L EF+P RG + + FW GS+
Sbjct: 129 LLTSFSPSYIWFVFLRTMVGCGV-SGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLL 187
Query: 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQ 164
A +++P + WRWL+ ++SIP IL+ F PES R+ G T A LE IA+
Sbjct: 188 IISMASVVIPTIGWRWLIRIASIPGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAK 247
Query: 165 VNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLAR 224
+N++ +P G+LV P E+ G+ F L SK R
Sbjct: 248 MNRSVMPEGQLVE-----PILEK------------------RGR-----FADLLDSKYLR 279
Query: 225 TTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL-------------------MFSH 265
TT+ +W++ G SFAYY V+L +EL D C S + H
Sbjct: 280 TTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPEVVETTGDSGEGLSPCYCH 339
Query: 266 --HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN 323
P D Y I++L EI L + ++ GR+LS++I + LF L L S+
Sbjct: 340 IFAPSD---YRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSS 396
Query: 324 ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383
G LF R V F IY AE+YPT +R+ G G + ++ RIG MV P ++ L+
Sbjct: 397 AGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTSGSLCRIGAMVAPFISQVLM 456
Query: 384 ANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 420
+ + A+ L V V +S +P ETKG+ L
Sbjct: 457 SASF-LGALCLFSSVCVVCAISAFTLPIETKGRALQQ 492
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | ||||||
| 383932368 | 482 | MFS [Gossypium hirsutum] | 0.915 | 0.811 | 0.616 | 1e-126 | |
| 255574249 | 497 | sugar transporter, putative [Ricinus com | 0.913 | 0.784 | 0.589 | 1e-122 | |
| 224118680 | 492 | predicted protein [Populus trichocarpa] | 0.915 | 0.794 | 0.612 | 1e-121 | |
| 255573803 | 498 | sugar transporter, putative [Ricinus com | 0.915 | 0.785 | 0.568 | 1e-116 | |
| 224118546 | 493 | predicted protein [Populus trichocarpa] | 0.915 | 0.793 | 0.541 | 1e-115 | |
| 218195538 | 529 | hypothetical protein OsI_17329 [Oryza sa | 0.911 | 0.735 | 0.530 | 1e-111 | |
| 222629519 | 424 | hypothetical protein OsJ_16102 [Oryza sa | 0.911 | 0.917 | 0.530 | 1e-111 | |
| 90265074 | 489 | H0702G05.6 [Oryza sativa Indica Group] | 0.911 | 0.795 | 0.530 | 1e-111 | |
| 38567900 | 588 | OSJNBa0060N03.20 [Oryza sativa Japonica | 0.911 | 0.661 | 0.530 | 1e-111 | |
| 242039569 | 491 | hypothetical protein SORBIDRAFT_01g02099 | 0.896 | 0.780 | 0.514 | 1e-109 |
| >gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/391 (61%), Positives = 293/391 (74%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFL ++VT GAGLLS+FSPNY+TL LR LVG GLG VFLSWFLEF+P SNRGMW
Sbjct: 91 RKGFLTISMVTFGAGLLSTFSPNYLTLALLRGLVGFGLGGSSVFLSWFLEFIPASNRGMW 150
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT GS+ EA AWI+MPRL+WRW+L S++PSF LL G PESPRYLC+KG
Sbjct: 151 MVVFSTFWTFGSIFEATLAWIVMPRLNWRWVLAFSAVPSFALLILYGVAPESPRYLCMKG 210
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 210
T++A R LEKIA VN+TKLP G LV+ RS E AP E L + TT+ KSG
Sbjct: 211 NTSDALRILEKIASVNQTKLPPGVLVSGRSNDKDEESAPSENTAPLLPSLSKSTTQSKSG 270
Query: 211 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 270
S F MLFSSKL RTT+LLW+L FG+SF+YY ++LL S+LSS + C L + +PQD
Sbjct: 271 FSSFFMLFSSKLIRTTLLLWVLFFGDSFSYYGIILLTSKLSSGQSTCFPSLQSNINPQDD 330
Query: 271 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLL 330
LY++ FITS+AE+PGLLL+AILVD GRK S+ IMF L+ +FL PL+ Q +LTT LL
Sbjct: 331 GLYLNAFITSMAELPGLLLSAILVDRVGRKHSMAIMFGLAFIFLTPLLIQQPAVLTTCLL 390
Query: 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT 390
FGARM MG FTV+ IY+ E+YPTSVR+TGAG A+A+GRIGGMVCPLVAV LV CHQ
Sbjct: 391 FGARMNAMGTFTVASIYSPELYPTSVRTTGAGVASAIGRIGGMVCPLVAVGLVNECHQTA 450
Query: 391 AVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
AV L +V IV SI+ + L P++TKG+ELSDT
Sbjct: 451 AVALFLVAIVVSIVCIQLFPYDTKGRELSDT 481
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/390 (58%), Positives = 295/390 (75%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R L ++T+GAG +S+FSPNY+TL+ LRCLVG GLG HVFLSWFLEF+P S+RG W
Sbjct: 94 RKCVLSITVITSGAGFISAFSPNYLTLVVLRCLVGFGLGGTHVFLSWFLEFIPTSHRGKW 153
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MVIFS+FWT+G + EA AWI+M RL+WRWLL LS++PSF LL F G PESPRYLCLKG
Sbjct: 154 MVIFSTFWTLGIIFEASLAWIVMLRLNWRWLLALSTVPSFSLLLFYGLVPESPRYLCLKG 213
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 210
RTA+AH+ LEKIA VN+ +LP G LV+ E + E L K + KSG
Sbjct: 214 RTAQAHQVLEKIALVNQKELPPGMLVSYGKIKEDEEISALEQKRSLLFMDREKISTLKSG 273
Query: 211 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 270
S F +LFSS L +TT+LLW+L FGN F+YY ++LL S+LSS +++C ++ S +PQD
Sbjct: 274 FSSFSLLFSSNLIQTTLLLWVLFFGNVFSYYGIILLTSQLSSSESKCSLTILHSQNPQDE 333
Query: 271 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLL 330
+L++D ITS AE+PG+LL+A++VD GRKLS+ IMF + +FLLPLV+ QS+ILTTGLL
Sbjct: 334 SLFMDVLITSFAELPGILLSAMMVDRFGRKLSMAIMFIFAWIFLLPLVSRQSDILTTGLL 393
Query: 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT 390
FGARM +G FTV+ IYA E+YPTS+RSTGAG A+A+GRIGGMVCPLVAVALV+NCH
Sbjct: 394 FGARMFSLGTFTVASIYAPELYPTSIRSTGAGTASAVGRIGGMVCPLVAVALVSNCHFKA 453
Query: 391 AVVLLVVVIVTSILSVMLIPFETKGQELSD 420
A++L VVI +++ ++L PFET G+ELSD
Sbjct: 454 AIILFEVVIAITVVCILLFPFETSGRELSD 483
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/392 (61%), Positives = 300/392 (76%), Gaps = 1/392 (0%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFLG ++T+ AG LS+FSPNY++L+ LRCLVGVGLG G VF SWFLEFVP S+RG W
Sbjct: 91 RQGFLGITIITSAAGFLSTFSPNYVSLLILRCLVGVGLGGGPVFSSWFLEFVPASHRGTW 150
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT G++ EA AWI++PRL+WRWLL SS+PS L F PESPRYL +KG
Sbjct: 151 MVVFSTFWTFGTIFEAALAWIVLPRLNWRWLLAFSSLPSIAQLFFYWIVPESPRYLSMKG 210
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 210
R EAH LEKIAQ+N++KLP G LV+ + E AP + LLSS N ++ KSG
Sbjct: 211 RITEAHNILEKIAQLNQSKLPPGMLVSDSTIGLDEESAPSKYTPLLSSTR-NLVSDFKSG 269
Query: 211 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 270
S F+MLFSSKL RTT+LLWLL FGN+F+YY ++LL SELSS + +C S ++ S + QD
Sbjct: 270 FSSFVMLFSSKLIRTTLLLWLLFFGNAFSYYGIILLTSELSSEEGKCASTVLRSENLQDD 329
Query: 271 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLL 330
+LYI+ FITSLAE+PG+LL+AI+VD GRKLS+ MF L+C+FLLPLV +Q LTT LL
Sbjct: 330 SLYINVFITSLAELPGILLSAIIVDRFGRKLSMAFMFVLACIFLLPLVFHQHATLTTALL 389
Query: 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT 390
FGARMC +G FTV+ IYA E+YPT +R+TGAG ANA+GRIGGMVCPLVAV LVA CH
Sbjct: 390 FGARMCAIGTFTVAAIYAPEVYPTVIRATGAGVANAVGRIGGMVCPLVAVGLVAGCHLKE 449
Query: 391 AVVLLVVVIVTSILSVMLIPFETKGQELSDTV 422
A++L VVIV S++ V+L PFET G+ELSD++
Sbjct: 450 AIILFEVVIVISVVCVLLFPFETSGRELSDSL 481
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/392 (56%), Positives = 277/392 (70%), Gaps = 1/392 (0%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R G LG L+T GAG LS+F PNYI+LITLRCLVG+GLG G VF SWFLEFVP S+RG W
Sbjct: 96 RKGILGSTLLTCGAGSLSTFCPNYISLITLRCLVGIGLGGGPVFSSWFLEFVPASHRGTW 155
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV++S+ WT G++ EA AWI+MPRL WRWLL SS+PS +LL F PESPRYLC KG
Sbjct: 156 MVVYSTSWTFGTIFEATLAWIVMPRLSWRWLLAFSSLPSIVLLLFYRLAPESPRYLCTKG 215
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 210
R +AHR LEKIA +N+ KLP G LV+ +T E + LLS + + KS
Sbjct: 216 RFTDAHRILEKIALLNQAKLPGGILVSDSTTGLDEESSSLSHQPLLSL-ARKRVSSFKSA 274
Query: 211 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 270
S F MLFSS+L +TT+LLW+L FGNSF YY ++LL SELS CRS + QD
Sbjct: 275 FSSFFMLFSSRLIKTTLLLWVLYFGNSFLYYGIILLTSELSGRQDECRSATSSLENHQDE 334
Query: 271 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLL 330
NLYID FITSLAE+PG++L+AI VD GRK S+ MF +C+FLLPLV++QS +L T L
Sbjct: 335 NLYIDIFITSLAELPGIILSAITVDRFGRKRSMIFMFVAACIFLLPLVSHQSAVLRTSFL 394
Query: 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT 390
FGARMC +G FT++ IY E+YPT VR+TG+G A+A GRIGGM+CPLVAV LV CH
Sbjct: 395 FGARMCAIGTFTIACIYCPELYPTPVRTTGSGVASAAGRIGGMICPLVAVGLVTGCHVEA 454
Query: 391 AVVLLVVVIVTSILSVMLIPFETKGQELSDTV 422
+++ VV S + ++ P+ETKG ELSD+V
Sbjct: 455 GIIVFEVVAAISAICLLFFPYETKGCELSDSV 486
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/408 (54%), Positives = 290/408 (71%), Gaps = 17/408 (4%)
Query: 20 FRLPHLWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFL 79
F LP+++Q+ GLLS+FSPNY +L+ +RCLVG+GLG V SWFL
Sbjct: 95 FSLPYIFQS----------------GLLSAFSPNYESLVIIRCLVGLGLGGSTVLCSWFL 138
Query: 80 EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ 139
EFVP +RG WMV+FS+FWT+G++ EA AW++M RL WRWLL SS+PS LL F G
Sbjct: 139 EFVPAPHRGKWMVVFSTFWTLGAIFEASLAWLVMQRLSWRWLLAFSSLPSIALLLFYGIV 198
Query: 140 PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN 199
PESPRYLC+KGR +AH+ L+KIA +N+++LP G LV + + AP + LLSS
Sbjct: 199 PESPRYLCMKGRINDAHKILQKIALLNQSELPPGMLVPDSTVGQEEKSAPSKYTPLLSST 258
Query: 200 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259
+ KS S F MLFSS L +TT+LLW+LLFGN F+YY ++LL SELSS +C S
Sbjct: 259 R-KVIVDFKSVFSSFFMLFSSTLIQTTLLLWVLLFGNVFSYYGIILLTSELSSQQGKCGS 317
Query: 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT 319
++ S + Q+ +LYI+ F+TSLAE+PGLLL+AI+VD GRKLS+ +M L C+FL PL+
Sbjct: 318 TILSSENLQNDSLYINVFVTSLAELPGLLLSAIIVDRLGRKLSMALMLVLGCIFLFPLLF 377
Query: 320 YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA 379
S LTT +LFGARMCVMG+FT++ +YA E+YPT+VR+TGAG A+++GRIGGM+CPLVA
Sbjct: 378 NVSANLTTAMLFGARMCVMGSFTIATLYAPELYPTAVRATGAGVASSVGRIGGMICPLVA 437
Query: 380 VALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTSD 427
V LV C+ A++L VV+ S S +L PFETKGQELSD+VD SD
Sbjct: 438 VGLVTGCYLTEAIILFEVVMAISAFSSLLFPFETKGQELSDSVDHVSD 485
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218195538|gb|EEC77965.1| hypothetical protein OsI_17329 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/396 (53%), Positives = 280/396 (70%), Gaps = 7/396 (1%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFL A+VT+GAG LS+F+PNY++LI+LR LVG+GLG G V SWFLEFVP RG W
Sbjct: 131 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 190
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW +MP+ WRWLL LS++PSF+LL F PESPR+LC+KG
Sbjct: 191 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 250
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT-EGK- 208
R EA LEK+A++N +LP+G+LV+ ++ + E + E LL+ + T E K
Sbjct: 251 RVTEAMDVLEKMARLNNVQLPSGRLVSDKN-IELDELSTSESTTLLADAEEDDTIIEDKV 309
Query: 209 ---SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH 265
GLS+ L S KL R T+LLW+ FGN+F+YY +VLL SELS+ + C + S
Sbjct: 310 SSFGGLSV-AKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESI 368
Query: 266 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL 325
H DA+LY + FI+S AEIPG L+A++VD GRKLS+ M SC+FL PL+ +++IL
Sbjct: 369 HSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDIL 428
Query: 326 TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385
T LFGAR+C+ +FT+ IYA EIYPTSVR+TG G A+++GRIGG++CPLVAVALV +
Sbjct: 429 TRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHS 488
Query: 386 CHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
C Q TA++L +VI S L+V PFETKG L+DT
Sbjct: 489 CQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 524
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222629519|gb|EEE61651.1| hypothetical protein OsJ_16102 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/396 (53%), Positives = 280/396 (70%), Gaps = 7/396 (1%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFL A+VT+GAG LS+F+PNY++LI+LR LVG+GLG G V SWFLEFVP RG W
Sbjct: 26 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 85
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW +MP+ WRWLL LS++PSF+LL F PESPR+LC+KG
Sbjct: 86 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 145
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT-EGK- 208
R EA LEK+A++N +LP+G+LV+ ++ + E + E LL+ + T E K
Sbjct: 146 RVTEAMDVLEKMARLNNVQLPSGRLVSDKN-IELDELSTSESTTLLADAEEDDTIIEDKV 204
Query: 209 ---SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH 265
GLS+ L S KL R T+LLW+ FGN+F+YY +VLL SELS+ + C + S
Sbjct: 205 SSFGGLSV-AKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESI 263
Query: 266 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL 325
H DA+LY + FI+S AEIPG L+A++VD GRKLS+ M SC+FL PL+ +++IL
Sbjct: 264 HSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDIL 323
Query: 326 TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385
T LFGAR+C+ +FT+ IYA EIYPTSVR+TG G A+++GRIGG++CPLVAVALV +
Sbjct: 324 TRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHS 383
Query: 386 CHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
C Q TA++L +VI S L+V PFETKG L+DT
Sbjct: 384 CQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 419
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/396 (53%), Positives = 280/396 (70%), Gaps = 7/396 (1%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFL A+VT+GAG LS+F+PNY++LI+LR LVG+GLG G V SWFLEFVP RG W
Sbjct: 91 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 150
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW +MP+ WRWLL LS++PSF+LL F PESPR+LC+KG
Sbjct: 151 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 210
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT-EGK- 208
R EA LEK+A++N +LP+G+LV+ ++ + E + E LL+ + T E K
Sbjct: 211 RVTEAMDVLEKMARLNNVQLPSGRLVSDKN-IELDELSTSESTTLLADAEEDDTIIEDKV 269
Query: 209 ---SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH 265
GLS+ L S KL R T+LLW+ FGN+F+YY +VLL SELS+ + C + S
Sbjct: 270 SSFGGLSV-AKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESI 328
Query: 266 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL 325
H DA+LY + FI+S AEIPG L+A++VD GRKLS+ M SC+FL PL+ +++IL
Sbjct: 329 HSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDIL 388
Query: 326 TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385
T LFGAR+C+ +FT+ IYA EIYPTSVR+TG G A+++GRIGG++CPLVAVALV +
Sbjct: 389 TRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHS 448
Query: 386 CHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
C Q TA++L +VI S L+V PFETKG L+DT
Sbjct: 449 CQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 484
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38567900|emb|CAE03655.2| OSJNBa0060N03.20 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/396 (53%), Positives = 280/396 (70%), Gaps = 7/396 (1%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFL A+VT+GAG LS+F+PNY++LI+LR LVG+GLG G V SWFLEFVP RG W
Sbjct: 190 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 249
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW +MP+ WRWLL LS++PSF+LL F PESPR+LC+KG
Sbjct: 250 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 309
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT-EGK- 208
R EA LEK+A++N +LP+G+LV+ ++ + E + E LL+ + T E K
Sbjct: 310 RVTEAMDVLEKMARLNNVQLPSGRLVSDKN-IELDELSTSESTTLLADAEEDDTIIEDKV 368
Query: 209 ---SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH 265
GLS+ L S KL R T+LLW+ FGN+F+YY +VLL SELS+ + C + S
Sbjct: 369 SSFGGLSV-AKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESI 427
Query: 266 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL 325
H DA+LY + FI+S AEIPG L+A++VD GRKLS+ M SC+FL PL+ +++IL
Sbjct: 428 HSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDIL 487
Query: 326 TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385
T LFGAR+C+ +FT+ IYA EIYPTSVR+TG G A+++GRIGG++CPLVAVALV +
Sbjct: 488 TRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHS 547
Query: 386 CHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
C Q TA++L +VI S L+V PFETKG L+DT
Sbjct: 548 CQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 583
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242039569|ref|XP_002467179.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] gi|241921033|gb|EER94177.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/404 (51%), Positives = 278/404 (68%), Gaps = 21/404 (5%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GFL A+VT+GAG LS+F+PNY++LI+LR LVG+GLG G V SWFLEFVP RG W
Sbjct: 91 RRGFLFTAIVTSGAGFLSAFAPNYLSLISLRFLVGIGLGGGPVLGSWFLEFVPAPTRGTW 150
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW +MP+ WRWLL LS+IPSF+LL F PESPR+LC+KG
Sbjct: 151 MVVFSAFWTVGTILEASLAWTVMPKFGWRWLLALSAIPSFLLLLFYAITPESPRFLCMKG 210
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARR-------------STLPTGERAPPELVHLLS 197
RT EA LEK+A++N +LP+G+LV+ + +TL +G L
Sbjct: 211 RTTEAVDVLEKMARLNNVQLPSGRLVSDKNIELDEVSGSSESTTLLSGAEESDNLSEDRG 270
Query: 198 SNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRC 257
S+ G + GK L + KL R T+LLW+ FGN+FAYY +VLL SELS+ + C
Sbjct: 271 SDFGGIKSVGK--------LLAPKLIRATLLLWMAFFGNAFAYYGIVLLTSELSNGNRIC 322
Query: 258 RSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL 317
+ S + +A+LY + FI+S AEIPG L+A++VD GRKLS+ M SC+FL+PL
Sbjct: 323 AKQDVESVNSTNASLYKNVFISSFAEIPGSFLSAMIVDRFGRKLSMASMLFTSCVFLVPL 382
Query: 318 VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPL 377
V +++ILT LFGAR+C+ +FT+ IYA EIYPT+VR+TG G A+++GRIGG++CPL
Sbjct: 383 VFSRTDILTRISLFGARLCISASFTIVYIYAPEIYPTAVRTTGIGIASSVGRIGGILCPL 442
Query: 378 VAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
VAVALV +C Q TA++L +VI S L+V PFETKG L+DT
Sbjct: 443 VAVALVHSCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 486
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | ||||||
| TAIR|locus:2089270 | 500 | NiaP "nicotinate transporter" | 0.927 | 0.792 | 0.470 | 8.1e-92 | |
| ZFIN|ZDB-GENE-070705-359 | 411 | svopb "SV2 related protein hom | 0.320 | 0.333 | 0.386 | 1e-43 | |
| ZFIN|ZDB-GENE-060526-336 | 549 | svopa "SV2 related protein hom | 0.407 | 0.316 | 0.381 | 2.3e-43 | |
| UNIPROTKB|F6XK47 | 483 | SVOP "Uncharacterized protein" | 0.407 | 0.360 | 0.370 | 9.6e-41 | |
| UNIPROTKB|E2QZ16 | 548 | SVOP "Uncharacterized protein" | 0.407 | 0.317 | 0.370 | 2.2e-40 | |
| UNIPROTKB|Q8N4V2 | 548 | SVOP "Synaptic vesicle 2-relat | 0.407 | 0.317 | 0.364 | 3.2e-40 | |
| UNIPROTKB|F1RGB1 | 548 | SVOP "Uncharacterized protein" | 0.407 | 0.317 | 0.370 | 3.5e-40 | |
| UNIPROTKB|G3MZU5 | 547 | SVOP "Synaptic vesicle 2-relat | 0.407 | 0.318 | 0.364 | 4.1e-40 | |
| UNIPROTKB|Q1JP63 | 548 | SVOP "Synaptic vesicle 2-relat | 0.407 | 0.317 | 0.364 | 4.1e-40 | |
| MGI|MGI:1915916 | 548 | Svop "SV2 related protein" [Mu | 0.407 | 0.317 | 0.370 | 1.2e-39 |
| TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 191/406 (47%), Positives = 248/406 (61%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMW 90
R GF+ A+VT AG LS+FSPNY+ LI LRCLVG+GLG G V SW+LEF+P +RG W
Sbjct: 90 RKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTW 149
Query: 91 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG 150
MV+FS+FWT+G++ EA AW++MPRL WRWLL SS+PS +LL F + ESPRYL L+G
Sbjct: 150 MVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQG 209
Query: 151 RTAEAHRALEKIAQVNKTKLPNGKLVARRST-LPTGERAPPELVHLLSSN-GGNKTTEXX 208
R AEA LEKIA++NKT+LP G L + T L + P E HLL + G
Sbjct: 210 RKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSK 269
Query: 209 XXXXXXXXXXXXXXA-------RTTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPL 261
A + T+ FGN+FAYY VVLL +EL++ RC
Sbjct: 270 IVLKADKEPGFSLLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTE 329
Query: 262 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ 321
+ D N Y D FI S AE PGLL++A +VD GRK S+ M C+FLLPL+++Q
Sbjct: 330 KQLRNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQ 388
Query: 322 SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVA 381
S +TT LLFG R+C+ AFTV IYA EIYPT+VR+TG G +++GRIGG++CPLVAV
Sbjct: 389 SPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVG 448
Query: 382 LVANCHQXXXXXXXXXXXXXXXXXXXXIPFETKGQELSDTVDFTSD 427
LV CHQ PFET G++L+D++ + +
Sbjct: 449 LVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISASKE 494
|
|
| ZFIN|ZDB-GENE-070705-359 svopb "SV2 related protein homolog b (rat)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 1.0e-43, Sum P(2) = 1.0e-43
Identities = 53/137 (38%), Positives = 86/137 (62%)
Query: 45 GLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104
GLLS+F+P Y ++ L+ LVG GLG ++ + EF+P +RG +V+ + FW +G+V
Sbjct: 49 GLLSAFAPVYGWMLVLQGLVGFGLGGAPQSVTLYTEFLPVKSRGPAIVLLAVFWAVGAVF 108
Query: 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQ 164
E + A ++MP L W+WLL +++P + A + PES R+ L+GR+ +A L +IA
Sbjct: 109 EVVLAILVMPTLGWKWLLAFTNLPLLVFAASCCWLPESARFDVLRGRSDKALNTLIRIAA 168
Query: 165 VNKTKLPNGKLVARRST 181
NK+ +P G+L+A T
Sbjct: 169 DNKSSVPAGRLIANTQT 185
|
|
| ZFIN|ZDB-GENE-060526-336 svopa "SV2 related protein homolog a (rat)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
Identities = 69/181 (38%), Positives = 97/181 (53%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V I M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWEVALLTSVVFIGMMISSSLWGNISDKYGRKTGLKMSVLWTLFYGILSAFAPIYGWILF 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P +R +++ FW +G+V E + A ++MP L WR
Sbjct: 179 LRALVGFGIGGAPQSVTLYAEFLPMRSRATCILLIEIFWALGTVFEVLLAILVMPTLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS+IP FI AFL F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLALSTIPLFIF-AFLCFWLPESARYDVLTGNQEKALNTLKRIAAENNVPMPLGKLIVA 297
Query: 179 R 179
R
Sbjct: 298 R 298
|
|
| UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 9.6e-41, Sum P(2) = 9.6e-41
Identities = 67/181 (37%), Positives = 94/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 54 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 113
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E I A +MP L WR
Sbjct: 114 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWR 173
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 174 WLLILSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 232
Query: 179 R 179
R
Sbjct: 233 R 233
|
|
| UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 67/181 (37%), Positives = 94/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E I A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLILSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 297
Query: 179 R 179
R
Sbjct: 298 R 298
|
|
| UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 3.2e-40, Sum P(2) = 3.2e-40
Identities = 66/181 (36%), Positives = 94/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLILSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 297
Query: 179 R 179
R
Sbjct: 298 R 298
|
|
| UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 67/181 (37%), Positives = 94/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E I A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLLLSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 297
Query: 179 R 179
R
Sbjct: 298 R 298
|
|
| UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 4.1e-40, Sum P(2) = 4.1e-40
Identities = 66/181 (36%), Positives = 94/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 118 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 177
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 178 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWR 237
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 238 WLLILSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 296
Query: 179 R 179
R
Sbjct: 297 R 297
|
|
| UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 4.1e-40, Sum P(2) = 4.1e-40
Identities = 66/181 (36%), Positives = 94/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V + M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS++P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLILSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 297
Query: 179 R 179
R
Sbjct: 298 R 298
|
|
| MGI|MGI:1915916 Svop "SV2 related protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 67/181 (37%), Positives = 93/181 (51%)
Query: 5 SWCDVFRPNAVNIFMFRLPHLWQNLV-----RMGFLGEALVTAGAGLLSSFSPNYITLIT 59
SW + V I M LW N+ + G L T G+LS+F+P Y ++
Sbjct: 119 SWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILV 178
Query: 60 LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 119
LR LVG G+G ++ + EF+P R +++ FW IG+V E + A +MP L WR
Sbjct: 179 LRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWR 238
Query: 120 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178
WLL LS+ P +L A L F PES RY L G +A L++IA N +P GKL+
Sbjct: 239 WLLLLSAAP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIIS 297
Query: 179 R 179
R
Sbjct: 298 R 298
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q940M4 | OCT7_ARATH | No assigned EC number | 0.5061 | 0.9250 | 0.79 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 427 | |||
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-63 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-22 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-22 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-16 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 6e-16 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 9e-14 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 3e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 9e-10 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 3e-07 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 5e-07 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-06 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-04 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 2e-63
Identities = 116/386 (30%), Positives = 181/386 (46%), Gaps = 48/386 (12%)
Query: 39 LVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSF 97
LVTA +G+L++FSPNY + R LVG+G+G V + EF+P R + + F
Sbjct: 165 LVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVF 224
Query: 98 WTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHR 157
+++G V + A+ I DWRWL S+P+F+ F PESPR+L +GR EA +
Sbjct: 225 FSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALK 281
Query: 158 ALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLML 217
L++IA++N KLP L L + K S +
Sbjct: 282 ILQRIAKINGKKLPAEVLS------------LSLEKDL---------SSSKKQYSFLDLF 320
Query: 218 FSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEF 277
+ L +TT+ L +L F +F+YY +VL + L N+Y+D F
Sbjct: 321 RTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNL------------------GGNIYLDLF 362
Query: 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTL--SCLFLLPLVTYQSNILTTGLLFGARM 335
I+ L E+P L+ +L+D GR+ ++ L L LL V L T L +
Sbjct: 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKF 422
Query: 336 CVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLL 395
+ AF + +Y AE+YPT VR+ G G + M R+G ++ P + + V+
Sbjct: 423 GITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKW-LFLPLVLFG 481
Query: 396 VVVIVTSILSVMLIPFETKGQELSDT 421
+ ++ IL++ L ETKG L +T
Sbjct: 482 GLALLAGILTLFLP--ETKGVPLPET 505
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 1e-22
Identities = 83/413 (20%), Positives = 146/413 (35%), Gaps = 71/413 (17%)
Query: 31 RMGFLGEALVTAGAGLLSSFSP--NYITLITLRCLVGVGLGSGHVFLSWFL-EFVPPSNR 87
+ L ++ LL F+ ++ LI R +VG+G+G V + ++ E P R
Sbjct: 76 KKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLR 135
Query: 88 GMWMVIFSSFWTIGSVSEAIGAWI------IMPRLDWRWLLGLSSIPSFILLAFLGFQPE 141
G ++ T G + + A I WR LGL +P+ +LL L F PE
Sbjct: 136 GALGSLYQLGITFGIL---VAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPE 192
Query: 142 SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG 201
SPR+L LKG+ EA L K+ V+ E+ S
Sbjct: 193 SPRWLVLKGKLEEARAVLAKLRGVSDVD--------------------QEIQEEKDSLER 232
Query: 202 NKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFG---NSFAYYAVVLLISELSSLDTRCR 258
+ E S L LF + ++L + N+ YY+ +
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIF------------ 280
Query: 259 SPLMFSHHPQDANLYIDEFITSLAE----IPGLLLAAILVDTAGRK-LSITIMFTLSCLF 313
+ D + ++ +A LVD GR+ L + ++ F
Sbjct: 281 ----------ETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICF 330
Query: 314 LLPLVTY--QSNILTTGLLFGARMCVMGAF------TVSLIYAAEIYPTSVRSTGAGAAN 365
L+ V + G++ + + AF V + +E++P VR A
Sbjct: 331 LVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIAT 390
Query: 366 AMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 418
A + + + + +V ++++ + +P ETKG+ L
Sbjct: 391 AANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVP-ETKGRTL 442
|
Length = 449 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 2e-22
Identities = 85/351 (24%), Positives = 140/351 (39%), Gaps = 48/351 (13%)
Query: 39 LVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFL-EFVPPSNRGMWMVIFSSF 97
L+ + LL + + N L+ LR L G+GLG L+ + E+ P RG + +
Sbjct: 90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCG 149
Query: 98 WTIG-SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEA 155
+ IG +V + W+I P WR L + I +LL L F PES +L K R
Sbjct: 150 YPIGAAVGGFLAGWLI-PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETV 207
Query: 156 HRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFL 215
R + IA P + + + G K S+F
Sbjct: 208 RRIVNAIA-------------------PQMQAEAQSALPEQKATQGTKR-------SVFK 241
Query: 216 MLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYID 275
LF K AR T+LLWLL F Y + + +L +
Sbjct: 242 ALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGF-----------SLSLAATG 290
Query: 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN---ILTTGLLFG 332
+ + + G ++ L D G ++ ++ L +F + + + + +L G + G
Sbjct: 291 GALFNFGGVIGSIIFGWLADRLGPRV-TALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG 349
Query: 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383
V G + A YPT++R+TG G A +GR+G ++ P++A L+
Sbjct: 350 --FFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-16
Identities = 88/411 (21%), Positives = 150/411 (36%), Gaps = 52/411 (12%)
Query: 31 RMGFLGEALVTAGAG-LLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFL-EFVPPSNRG 88
+ + V L++F+ + LI R L+G+G+G + +L E P + RG
Sbjct: 103 SLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRG 162
Query: 89 MWMVIFSSFWTIGSVSEAI---GAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRY 145
++ T G + G + L WR LGL IP+ +L L F PESPR+
Sbjct: 163 ALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRW 222
Query: 146 LCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT 205
L KGR EA ++L ++ T + +L+ + V
Sbjct: 223 LVGKGRVEEARKSLARL---RGTSGEDKELLDELELIDIKRSIEKRSV------------ 267
Query: 206 EGKSGLSLFLMLFSSKLARTTILL--WLLLF--GNSFAYYAVVLLISELSSLDTRCRSPL 261
S SLF + ++ W F N+ YY+ + + S D
Sbjct: 268 -QPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH----AF 322
Query: 262 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK--LSITIMFTLSCLFLLPLVT 319
+ S I +A LVD GR+ L I CLF+L ++
Sbjct: 323 LVS------------IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILG 370
Query: 320 YQS---NILTTGLLFGARMCVMGAF------TVSLIYAAEIYPTSVRSTGAGAANAMGRI 370
+ ++G + + + AF V + +EI+P S+R G A A +
Sbjct: 371 ASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWL 430
Query: 371 GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421
+ + ++ + + + V ++ V ETKG+ L +
Sbjct: 431 ANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 6e-16
Identities = 62/239 (25%), Positives = 95/239 (39%), Gaps = 26/239 (10%)
Query: 46 LLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104
SSF Y + R L G G+G + S+F EF+ RG + FW IG +
Sbjct: 247 FFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY 306
Query: 105 EAIGAWIIMPRLDWRWLLG-------------LSSIPSFILLAFLGFQPESPRYLCLKGR 151
A AW I+P W + +G + + P + L F PESPR+ G+
Sbjct: 307 AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGK 366
Query: 152 TAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG-------NKT 204
EA L+ I N + + V + + T + EL+ + S G
Sbjct: 367 HDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQE-DELIEIESDTGTWYQRCFVRAL 425
Query: 205 TEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVL----LISELSSLDTRCRS 259
+EG FL F+ ++ TI L + F SF YY + + +I L + D +
Sbjct: 426 SEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALT 484
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 9e-14
Identities = 72/361 (19%), Positives = 131/361 (36%), Gaps = 62/361 (17%)
Query: 44 AGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWF-LEFVPPSNRGMWMVIFSSFWTIGS 102
L F+P YIT+ R ++G+G+G + + + +E P R + S + +G+
Sbjct: 90 GTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGA 149
Query: 103 VSEAIGAWIIMPRLD--WRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALE 160
V A +++P WR L +S +P L PE+ + E H
Sbjct: 150 VVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDW-------KEKHAGKA 202
Query: 161 KIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS 220
+ + +A +M ++
Sbjct: 203 LVRTMVDILYGGEHRIANI-----------------------------------VMTLAA 227
Query: 221 KLARTTILLWLLLFGNSFAYYAVVLLISELSS------LDTRCRSPLMFSHHPQDANLYI 274
+ ++ W F Y V++L + L S L T ++ L S H +
Sbjct: 228 AMVQSAGKRWPT-----FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIV-- 280
Query: 275 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGL-LFGA 333
+++ I G + L D GR+ + L ++P+ +N+ GL LF
Sbjct: 281 --VFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQ 338
Query: 334 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVV 393
+M V G + + + E +PT R+ G G +G +GG + P++ AL+A
Sbjct: 339 QMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIG-ALLAQRLDEYGTA 397
Query: 394 L 394
L
Sbjct: 398 L 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 12/187 (6%)
Query: 217 LFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 276
LF A T+LLW+ F Y L++ L SL + + + +
Sbjct: 213 LFGEGRATATLLLWISYFFTLIVLY---FLLNWLPSL--------LVGQGLSRSQAGLVQ 261
Query: 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 336
++ G LL L+D + + +++ L L S F A +
Sbjct: 262 IAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321
Query: 337 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLV 396
V+G +V A YPT VR TG GAA A+GR+G M PL+A L+A + T V+
Sbjct: 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA-LGRSTVGVIGA 380
Query: 397 VVIVTSI 403
+ V +
Sbjct: 381 SIPVILV 387
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 9e-10
Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 11/203 (5%)
Query: 209 SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQ 268
+ L L L L L R +LL L F SF YY ++ + L
Sbjct: 160 AILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLY----------LQEVLGLS 209
Query: 269 DANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS-ITIMFTLSCLFLLPLVTYQSNILTT 327
A + + L I G LL +L D GR+ + I L+ L LL L S L
Sbjct: 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269
Query: 328 GLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387
L + AF L A+E+ P R T +G N G +GG + PL+A L+
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329
Query: 388 QMTAVVLLVVVIVTSILSVMLIP 410
++L + + + L ++L+P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 43 GAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 102
G GL S SP YI I + G L S + F F G +V F +++ S
Sbjct: 133 GVGLASMLSPMYIAEIAPAHIRGK-LVSFNQFAIIF---------GQLVVYFVNYFIARS 182
Query: 103 VSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKI 162
+ W+ WR++ +IP+ + L L F PE+PRYL +G+ +A L KI
Sbjct: 183 GDAS---WLNT--DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKI 237
|
Length = 479 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 79/353 (22%), Positives = 128/353 (36%), Gaps = 61/353 (17%)
Query: 95 SSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAE 154
S + G+ + WR L+G ++P+ + L F PE+PRY + E
Sbjct: 180 HSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVE 239
Query: 155 AHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF 214
A + + + K+ A + E+A + +S T K
Sbjct: 240 -------QAASDMSAVLQVKIEAEPDEV---EKASTAVEVPKASWSDFFTHFFKW--RHG 287
Query: 215 LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYI 274
L T W LL A+Y V L + S + +S N Y
Sbjct: 288 KHLLG------TAGSWFLL---DIAFYGVNLNQKVILSA-------IGYSPPAATNNAYE 331
Query: 275 DEFITSLAEI--------PGLLLAAILVDTAGRKLSITIM--FTLSCLFLLPLVTYQSNI 324
+ + T++ + PG + LVD GRK I +M F L+ LF + Y N
Sbjct: 332 ELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK-PIQLMGFFILTVLFFVLGFAY--NH 388
Query: 325 LTTGLLFGARMCVMGAF-------TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPL 377
L+T + V+ F + I E++PT RST G + A G+ G ++
Sbjct: 389 LSTHGFLA--IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQF 446
Query: 378 VAVALV----------ANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 420
+ L + + + + IL +LIP ETKG+ L +
Sbjct: 447 GFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIP-ETKGKSLEE 498
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 16/154 (10%)
Query: 272 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL--FLLPLVTYQSNILTTGL 329
+Y F+ +LA +PG +++A+L+D GR + LSC+ F L +S ++
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMI---- 652
Query: 330 LFGARMCVMGAFTVSL-----IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 384
A +C+ G +++ + E+YP+ R+T G NA+ + ++ L+ + V
Sbjct: 653 ---ALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709
Query: 385 NCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 418
+ + +L++ L P +T+GQ L
Sbjct: 710 ITKAAPILFASAALACGGLLALKL-P-DTRGQVL 741
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSNRGM 89
R L L+ A LL +F+ + L+ R L+G+G G+ + + E+ PP RG
Sbjct: 64 RRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGR 123
Query: 90 WMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 138
+ +FS+ + +G++ + ++ L WRWL + +I +L L F
Sbjct: 124 ALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 62/348 (17%), Positives = 110/348 (31%), Gaps = 69/348 (19%)
Query: 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGM 89
R L L+ A LL F+ + L+ LR L G+G G+ + ++ PP RG
Sbjct: 62 RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGR 121
Query: 90 WMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLK 149
+ + S+ + +G+ + ++ WR + +I + + L
Sbjct: 122 ALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLA---------ALLL 172
Query: 150 GRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS 209
R + + + +P KL+ R
Sbjct: 173 PRPPPESKRPKPAEEAPAPLVPAWKLLLRDPV---------------------------- 204
Query: 210 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQD 269
L L L L A +L +L L+ A++ + L+
Sbjct: 205 -LWLLLALLLFGFAFFALLTYLPLYQEVLGLSALL--------------AGLLLG----- 244
Query: 270 ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF---TLSCLFLLPLVTYQSNILT 326
+ L G LL L D GR+ + + L+ L L L +S++
Sbjct: 245 --------LAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296
Query: 327 TGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMV 374
L F +++ P R T +G N G +GG +
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 289 LAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGA----FTVS 344
L+ L D GR+ + I L+ L +PL+ + + L F + +
Sbjct: 274 LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPM 333
Query: 345 LIYAAEIYPTSVRSTGAG-AANAMGRIGGMVCPLVAVALVANCHQMTAV 392
+ E++PT VR TGA A N G I G P +A ALVA A+
Sbjct: 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAI 382
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 1/134 (0%)
Query: 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCV 337
SL LA L D GR+ + I L L LL L+ S L L +
Sbjct: 40 AFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGG 99
Query: 338 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLV 396
F + A+ +P R G +A +G + PL+ L + + ++L +
Sbjct: 100 GALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAI 159
Query: 397 VVIVTSILSVMLIP 410
+ ++ ++L+ +L+P
Sbjct: 160 LALLAAVLAALLLP 173
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.98 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.97 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.95 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.95 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.95 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.94 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.94 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.94 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.93 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.92 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.92 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.92 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.91 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.91 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.91 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.91 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.91 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.91 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.9 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.9 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.89 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.89 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.89 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.89 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.89 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.88 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.88 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.87 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.87 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.87 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.86 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.86 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.86 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.86 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.86 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.86 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.85 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.85 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.85 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.85 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.85 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.84 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.84 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.84 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.84 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.82 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.82 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.82 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.82 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.82 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.81 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.81 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.81 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.8 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.8 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.79 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.78 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.78 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.77 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.77 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.76 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.75 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.75 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.72 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.72 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.71 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.7 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.68 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.67 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.66 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.63 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.63 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.63 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.62 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.62 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.61 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.58 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.57 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.55 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.53 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.52 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.48 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.48 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.46 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.46 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.42 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.4 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.36 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.36 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.28 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.26 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.21 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.2 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.2 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.19 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.18 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.17 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.16 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.14 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.1 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.08 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.08 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.08 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.07 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.07 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.07 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.06 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.06 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.05 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.05 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.04 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.04 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.03 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.03 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.02 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.02 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.02 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.02 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.01 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.01 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.99 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.94 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.93 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.91 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.91 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.88 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.87 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.86 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.86 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.86 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.85 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.85 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.83 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.79 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.79 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.75 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.74 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.73 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.73 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.71 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.7 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.7 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.69 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.68 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.68 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.67 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.66 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.66 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.66 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.66 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.66 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.65 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.65 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.65 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.64 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.63 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.62 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.61 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.59 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.59 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.57 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.56 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.53 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.52 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.52 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.51 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.48 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.47 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.47 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.47 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.46 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.44 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.44 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.44 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.42 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.36 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.35 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.34 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.33 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.31 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.29 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.25 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.23 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.21 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.21 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.19 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.18 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.12 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.11 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.09 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.02 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 97.99 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.98 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.84 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.83 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.8 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.8 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.78 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.72 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 97.71 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 97.71 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.7 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.68 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.66 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.61 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.44 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.43 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.41 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.37 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.33 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 97.27 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.26 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 97.25 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.23 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 97.13 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.12 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 97.08 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 97.08 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.0 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.86 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.83 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 96.8 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 96.75 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.45 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 96.35 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.32 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 96.27 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.15 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 96.12 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.12 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.76 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.52 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 95.28 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 95.26 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 95.1 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 94.97 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 94.64 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 94.57 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 93.82 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 93.78 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.53 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 92.92 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 90.1 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 85.88 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 85.26 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 84.79 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 81.89 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 81.38 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 81.31 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 80.37 |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=395.34 Aligned_cols=381 Identities=37% Similarity=0.569 Sum_probs=318.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHHHHHhHhHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~ 105 (427)
|++||||.+.++.+...+..++.+++||+..++++|.+.|+|+|+.|...++..|..|..+|+..+-+. .+|.+|.++.
T Consensus 138 d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~e 216 (528)
T KOG0253|consen 138 DTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFE 216 (528)
T ss_pred hhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999888888899999999999988777 9999999999
Q ss_pred HHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCCCC
Q 014304 106 AIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTG 185 (427)
Q Consensus 106 ~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (427)
..+++++.+..|||+......+|..+...+.+++||||||++.||+.+||.+.++|+++.|++++|...+..+.+.+.++
T Consensus 217 a~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~ 296 (528)
T KOG0253|consen 217 ALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQ 296 (528)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhh
Confidence 99999999999999999888899888888889999999999999999999999999999999988876654332222111
Q ss_pred CCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC------C
Q 014304 186 ERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR------S 259 (427)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~------~ 259 (427)
++ .+.+... .++.++.. .+..++++++.|++++++|.+|+++.+.||+..+....+.+.+..|. +
T Consensus 297 e~--~~~~~~~----~~a~ke~r---g~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p 367 (528)
T KOG0253|consen 297 EE--SDLDDSK----SSAAKEVR---GGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLP 367 (528)
T ss_pred hh--hchhhhh----hccccccc---cchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcch
Confidence 11 0100000 00111111 35568899999999999999999999999999998877766554332 1
Q ss_pred CCccC---CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 014304 260 PLMFS---HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 336 (427)
Q Consensus 260 ~~~~~---~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (427)
...+. -......-|.+.++..+.+++|.+++++++||+|||+.+..++++++++.+++....+....++..+.+.+|
T Consensus 368 ~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf 447 (528)
T KOG0253|consen 368 TELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF 447 (528)
T ss_pred hHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 11111 011223458999999999999999999999999999999999999999888877655555567788889999
Q ss_pred HhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCC
Q 014304 337 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 416 (427)
Q Consensus 337 ~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~ 416 (427)
+.+++.+.|+|++|+|||.+|++|.|.|+.++|+|++++|++. +....+...+..+++++++++++++.++|-|||||
T Consensus 448 isg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 448 ISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGR 525 (528)
T ss_pred HhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence 9999999999999999999999999999999999999999987 35555556788999999999999999999999999
Q ss_pred cc
Q 014304 417 EL 418 (427)
Q Consensus 417 ~l 418 (427)
++
T Consensus 526 ~l 527 (528)
T KOG0253|consen 526 SL 527 (528)
T ss_pred CC
Confidence 86
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=365.55 Aligned_cols=390 Identities=24% Similarity=0.347 Sum_probs=281.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+++++++++.+++++++++++++.+++++|++.|++.|+. ++...++.|++|++.||+..++.+.++.+|.++
T Consensus 227 DR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il 306 (742)
T TIGR01299 227 DKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY 306 (742)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999986 567888999999999999999999999999998
Q ss_pred HHHHHHHhcC-------------CCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCC-
Q 014304 105 EAIGAWIIMP-------------RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKL- 170 (427)
Q Consensus 105 ~~~~~~~~~~-------------~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~- 170 (427)
++.+++.+.+ ..+||+++++.++|+++.++.++++|||||||..|||.+||.++++++++.|++..
T Consensus 307 a~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~ 386 (742)
T TIGR01299 307 AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKG 386 (742)
T ss_pred HHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcC
Confidence 8876655432 24699999999999988888888999999999999999999999999988775432
Q ss_pred -CCcccccccccCCCCCCCCccchhccccC--CC---CCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014304 171 -PNGKLVARRSTLPTGERAPPELVHLLSSN--GG---NKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVV 244 (427)
Q Consensus 171 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~ 244 (427)
+.+.+..+........++..+.. ..... ++ ....+....+..+.++|++++++++++++.+|++..+.||++.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~ 465 (742)
T TIGR01299 387 HPEKVFSVNHIKTIHQEDELIEIE-SDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLS 465 (742)
T ss_pred chhHHHHHHHHHHhhhhhhhhccc-ccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111000000000000000000 00000 00 0000001112356789999999999999999999999999999
Q ss_pred HHHHHhhccc---c-----------------------------------------------------CCCCCCccCC---
Q 014304 245 LLISELSSLD---T-----------------------------------------------------RCRSPLMFSH--- 265 (427)
Q Consensus 245 ~~~~~l~~~~---~-----------------------------------------------------~~~~~~~~~~--- 265 (427)
.|.|.+.... . .|.-..+...
T Consensus 466 ~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (742)
T TIGR01299 466 VWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTF 545 (742)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchh
Confidence 9999763210 0 0000000000
Q ss_pred ---------------------------------------------CCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChh
Q 014304 266 ---------------------------------------------HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK 300 (427)
Q Consensus 266 ---------------------------------------------~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR 300 (427)
.......+...++.+++.++|.+++++++||+|||
T Consensus 546 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr 625 (742)
T TIGR01299 546 FKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL 625 (742)
T ss_pred hhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 00001235556677788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHH
Q 014304 301 LSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 380 (427)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~ 380 (427)
+++..+.++++++.+.+....+.....+..++..++..+.++..+++++|+|||+.|++++|++++.+++|++++|++.+
T Consensus 626 ~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g 705 (742)
T TIGR01299 626 RMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFG 705 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887777766555443322222222333344455667889999999999999999999999999999999999988
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCCcc
Q 014304 381 ALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 418 (427)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l 418 (427)
++... +...++++++++.++++++.+++ |||+++.|
T Consensus 706 ~L~~~-~~~~pf~i~a~~lll~~ll~~~L-PET~~~~l 741 (742)
T TIGR01299 706 SFVGI-TKAAPILFASAALACGGLLALKL-PDTRGQVL 741 (742)
T ss_pred HHHHh-hhHHHHHHHHHHHHHHHHHHHhC-CCCccccc
Confidence 77664 34467777777777877777766 79999875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=340.97 Aligned_cols=364 Identities=20% Similarity=0.289 Sum_probs=269.4
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHhhhccccch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 014304 24 HLWQNLVRMGFLGEALVTAGAGLLSSF---SPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 24 ~~~~~GRk~~l~~~~~~~~i~~~~~~~---a~~~~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
-.||+|||.++.++.++..++++...+ .+++++++++|++.|+..|... ....|+.|++|++.||.++.+.+.+..
T Consensus 83 la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~ 162 (485)
T KOG0569|consen 83 LADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVV 162 (485)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHH
Confidence 347999999999999999888887664 5789999999999999999875 567788999999999999999999999
Q ss_pred HhHhHHHHHHH--HhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhh-cCchHHHHHHHHHHHhhcCCCCCCcccc
Q 014304 100 IGSVSEAIGAW--IIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCL-KGRTAEAHRALEKIAQVNKTKLPNGKLV 176 (427)
Q Consensus 100 iG~~~~~~~~~--~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~-k~r~~ea~~~l~~~~~~~~~~~~~~~~~ 176 (427)
+|.+++.+++. +++....|++.+.+..+|+++.++...++|||||||.. |||.+||++.++++++.+..+...++.
T Consensus 163 ~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~- 241 (485)
T KOG0569|consen 163 IGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEM- 241 (485)
T ss_pred HHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHH-
Confidence 99999876653 23456679999999999999999999999999999987 899999999999998754211100000
Q ss_pred cccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 014304 177 ARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNS------FAYYAVVLLISE 249 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~------~~~y~~~~~~~~ 249 (427)
.++.++.+ .+++ +..++.++++ ++.|+...+...+.+++. ..+|+..++...
T Consensus 242 ----------------~~e~~~~~--~~~~---~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a 300 (485)
T KOG0569|consen 242 ----------------LREIEEEE--LEKK---KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA 300 (485)
T ss_pred ----------------HHHHHHhc--cccc---cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc
Confidence 00000000 0100 1124566665 566666555555544433 346666555431
Q ss_pred hhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh----hc-c-h
Q 014304 250 LSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQ-S-N 323 (427)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~----~~-~-~ 323 (427)
-. ..+...+ .+...+...++..+++.+++||.|||++++.+...+.++.+.+.. .. . +
T Consensus 301 G~---------------~~~~a~~-an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (485)
T KOG0569|consen 301 GF---------------TPEEAQY-ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGS 364 (485)
T ss_pred CC---------------CHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 10 1112233 344557778889999999999999999999888777665444332 11 1 2
Q ss_pred hHHH---HHHHHH-HHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHH
Q 014304 324 ILTT---GLLFGA-RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVI 399 (427)
Q Consensus 324 ~~~~---~~~~~~-~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~ 399 (427)
|..+ +..++. ..+..|..+++|.+.+|+||++.|+++.+++..++|+.+++..+.++.+.+.+++ ..++.|.+.+
T Consensus 365 ~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~ 443 (485)
T KOG0569|consen 365 WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPL 443 (485)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHH
Confidence 3222 111221 2334566789999999999999999999999999999999999999988888776 6788899999
Q ss_pred HHHHHHHhhccccCCCCcccccccccC
Q 014304 400 VTSILSVMLIPFETKGQELSDTVDFTS 426 (427)
Q Consensus 400 ~i~~~~~~~l~pEtk~~~l~e~~~~~~ 426 (427)
+++.++.++..||||||+.+|+.++.+
T Consensus 444 ~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 444 AIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred HHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 999999999999999999999887643
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=344.44 Aligned_cols=366 Identities=22% Similarity=0.252 Sum_probs=251.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchh------HHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPN------YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFW 98 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~------~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~ 98 (427)
||+|||+++.++++++.+++++.+++++ +.+++++|+++|++.|+. +....|..|++|+++||+.+++.+.++
T Consensus 81 d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~ 160 (502)
T TIGR00887 81 DKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQ 160 (502)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 6999999999999999999999998876 789999999999999987 567788999999999999999999999
Q ss_pred HHhHhHHHHHHHHhc-----------------------CCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchH-H
Q 014304 99 TIGSVSEAIGAWIIM-----------------------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTA-E 154 (427)
Q Consensus 99 ~iG~~~~~~~~~~~~-----------------------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~-e 154 (427)
.+|.++++.+...+. ..++||+++.++++|+++..+.++++|||||||..|||.+ |
T Consensus 161 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~ 240 (502)
T TIGR00887 161 GFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQ 240 (502)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHH
Confidence 999988877654331 1247999999999999988888889999999999998875 4
Q ss_pred HHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCc----chhhHHHHHH
Q 014304 155 AHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS----KLARTTILLW 230 (427)
Q Consensus 155 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~ 230 (427)
+++.+++.++.+. ++ + ..+.++. ++ ++++.+ ..+++++++ ++++.++.++
T Consensus 241 a~~~~~~~~~~~~---~~-~-----~~~~~~~----------~~----~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~ 294 (502)
T TIGR00887 241 AASDMSAVLQVKI---EA-E-----PDEVEKA----------ST----AVEVPK---ASWSDFFTHFFKWRHGKHLLGTA 294 (502)
T ss_pred HHHHHHHHhcccc---cc-C-----cccccch----------hc----cccchh---hhHHHHHHHHhhhHHHHHHHHHH
Confidence 7776766643211 00 0 0000000 00 000000 135566542 3334455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCccCCCCCC--h----hHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHH
Q 014304 231 LLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQD--A----NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT 304 (427)
Q Consensus 231 ~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~----~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~ 304 (427)
..++++.+.+|+...+.|.+....+... .. .... . .......+..+..+++.+++++++||+|||++++
T Consensus 295 ~~~~~~~~~~y~~~~~~p~i~~~~G~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~ 369 (502)
T TIGR00887 295 GSWFLLDIAFYGVNLNQKVILSAIGYSP--PA---ATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQL 369 (502)
T ss_pred HHHHHHHHHHHccccccHHHHHHHcCCC--Cc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Confidence 6677777888888777665542211100 00 0000 0 0111233444566778889999999999999987
Q ss_pred HHHHHHHHHHHHHHhhc---chhHHHHHHHH-HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHH
Q 014304 305 IMFTLSCLFLLPLVTYQ---SNILTTGLLFG-ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 380 (427)
Q Consensus 305 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~ 380 (427)
.+..+++++...+.... +.......... ..++..+..+..|.+++|+||++.|+++.|+++.+++++++++|++.+
T Consensus 370 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~ 449 (502)
T TIGR00887 370 MGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFL 449 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 76665554443333211 11111111111 122234455678999999999999999999999999999999999999
Q ss_pred HHHhhc----------chhHHHHHHHHHHHHHHHHHhhccccCCCCccccccc
Q 014304 381 ALVANC----------HQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVD 423 (427)
Q Consensus 381 ~l~~~~----------~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l~e~~~ 423 (427)
++.+.. +....+.+++++++++.++. ++.|||||+++||...
T Consensus 450 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 450 YLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSG 501 (502)
T ss_pred hhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence 887632 22346778888887776665 4558999999988644
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=325.77 Aligned_cols=350 Identities=33% Similarity=0.569 Sum_probs=267.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||++++++.++.++++++.++++|+++++++|++.|++.|+. +....++.|+.|+++|++..++.+.++.+|.++
T Consensus 152 Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~ 231 (505)
T TIGR00898 152 DRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL 231 (505)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999986 567788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.+++.+. +||+.+.+.+++.++..+..+++||||+|+..++|.+|+++.+++..+.|+...+++.... +
T Consensus 232 ~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~------~ 302 (505)
T TIGR00898 232 LPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSL------S 302 (505)
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhh------h
Confidence 888877653 4999999999998887777788999999999999999999999999887764322111000 0
Q ss_pred CCCCCccchhccccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 014304 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
.++. . +.++. ...++++++ ++.++.++..+..++...+.||++.++.+.+.
T Consensus 303 -----------~~~~-~-~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 354 (505)
T TIGR00898 303 -----------LEKD-L-SSSKK---QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG------------ 354 (505)
T ss_pred -----------hhhh-h-hhccC---CCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC------------
Confidence 0000 0 00000 113456665 55666666777778888888887766544322
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHhhhh
Q 014304 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN--ILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 341 (427)
.+.+...++.++..+++.+++++++||+|||+.+..+.++++++.+.+....+. +......++..++..+.+
T Consensus 355 ------~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (505)
T TIGR00898 355 ------GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAF 428 (505)
T ss_pred ------CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Confidence 123556667788889999999999999999999988777766655544432222 222333334445555667
Q ss_pred HhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCCccccc
Q 014304 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 421 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l~e~ 421 (427)
...+.+.+|++|++.|+++.|+++.++++|++++|++.+ +. ..+...++.+++++.+++++..+++ |||++++++|+
T Consensus 429 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l-pet~~~~l~~t 505 (505)
T TIGR00898 429 QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILTLFL-PETKGVPLPET 505 (505)
T ss_pred HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHHHcC-cCCCCCCCCCC
Confidence 788999999999999999999999999999999999887 43 3344567788888887777776655 69999999885
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=319.37 Aligned_cols=369 Identities=30% Similarity=0.408 Sum_probs=279.5
Q ss_pred hhhhhccchhhhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHH
Q 014304 16 NIFMFRLPHLWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIF 94 (427)
Q Consensus 16 ~~~~~~~~~~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~ 94 (427)
+++++.++| ++|||+++++++++..++++++++++|++++++.||++|++.++. .+...+..|+.++++|+.++++.
T Consensus 135 ~~i~g~lsD--~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~ 212 (521)
T KOG0255|consen 135 SLIFGPLSD--RFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLG 212 (521)
T ss_pred HhhheehHh--hcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHH
Confidence 344555555 799999999999999999999999999999999999999999887 45677889999999999999996
Q ss_pred HHHHHHhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcc
Q 014304 95 SSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGK 174 (427)
Q Consensus 95 ~~~~~iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~ 174 (427)
..++..|.+..+..+++. .+||+.+++..+|+.+.++.++..||||||+..|||.+||++.++++++.|+++...++
T Consensus 213 ~~~~~~~~~~~~~~a~~~---~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~ 289 (521)
T KOG0255|consen 213 GFFFVGGLMLPAGAAYIT---RDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKE 289 (521)
T ss_pred HHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHH
Confidence 677777777776667765 38999999999999887777777789999999999999999999999988744322211
Q ss_pred cccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014304 175 LVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAVVLLISELSSL 253 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~ 253 (427)
..+... ..++ . +..+.+ ....+.++++ ++.+++++.++..|+.....||++.+....+.
T Consensus 290 ~~~~~~--------------~~~~-~--~~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg-- 349 (521)
T KOG0255|consen 290 LLRLEL--------------LLRP-L--KLLFTE-PKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLG-- 349 (521)
T ss_pred HHHHHH--------------HhhH-h--hhhccC-CCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcC--
Confidence 110000 0000 0 000000 1123556665 45888888888999989999999887654332
Q ss_pred ccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc--ch-hHHHHHH
Q 014304 254 DTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ--SN-ILTTGLL 330 (427)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~ 330 (427)
.+.+.+..+.+....++....+.+.|+.|||..+..+.+...+.++...... .. +......
T Consensus 350 ----------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (521)
T KOG0255|consen 350 ----------------GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILP 413 (521)
T ss_pred ----------------chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 3456666677778888988999999999999999888777666655544322 22 2344445
Q ss_pred HHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 014304 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
.+..++...++...+.+.+|++||.+|+++.+.++.+++++++++|++...... +.......+++....+.++++.++.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l 492 (521)
T KOG0255|consen 414 LLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLL 492 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcC
Confidence 555666667777889999999999999999999999999999999988654433 3333444446777777777776667
Q ss_pred ccCCCCcccccccccC
Q 014304 411 FETKGQELSDTVDFTS 426 (427)
Q Consensus 411 pEtk~~~l~e~~~~~~ 426 (427)
|||+++.++|+..|.+
T Consensus 493 pet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 493 PETKGKPLPGTLLDAE 508 (521)
T ss_pred cccCCCCCchhHHHHH
Confidence 8999999999888765
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=366.49 Aligned_cols=361 Identities=29% Similarity=0.439 Sum_probs=258.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSP---NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~---~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||++++++.++..+++++.++++ |+.+++++|++.|++.|+. .....|+.|++|+++||+..++.+.++.+|
T Consensus 71 d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G 150 (451)
T PF00083_consen 71 DRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALG 150 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 699999999999999999999999999 9999999999999999997 466788899999999999999999999999
Q ss_pred HhHHHHHHHHhcCC---CChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccc
Q 014304 102 SVSEAIGAWIIMPR---LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 102 ~~~~~~~~~~~~~~---~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
.+++..+.+..... .+||..+.++++|+++..+..+++|||||||..|||.|||+++++++++.+.. +++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~---~~~~--- 224 (451)
T PF00083_consen 151 ILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIE---DEEI--- 224 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccc---cccc---
Confidence 99888776654332 45999999999999888877889999999999999999999999886543211 1110
Q ss_pred cccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCc-chhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccC
Q 014304 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS-KLARTTILLWLLLFGNSFAY-YAVVLLISELSSLDTR 256 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~l~~~~~~ 256 (427)
+++.+ +.. +.++.+ ..+++++++ +++++....+.+.+.+...+ +....+.+.+....
T Consensus 225 -----~~~~~-----~~~------~~~~~~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~-- 283 (451)
T PF00083_consen 225 -----EEIKA-----EKK------ESQESK---ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENA-- 283 (451)
T ss_pred -----ccccc-----ccc------cccccc---eeeeecccccccccccccccccccccccccccccccccccccccc--
Confidence 00000 000 000000 244566654 34555555544444443333 23333333332111
Q ss_pred CCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---h--hcc----hhHHH
Q 014304 257 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---T--YQS----NILTT 327 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~---~--~~~----~~~~~ 327 (427)
+... . .....+.++..+++.+++.+++||+|||++++.+...++++...+. . ... +....
T Consensus 284 ---------~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 352 (451)
T PF00083_consen 284 ---------GISN-S-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSI 352 (451)
T ss_pred ---------cccc-c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111 1 2334455566777888888999999999988887766655544432 1 111 11111
Q ss_pred HHHHHHH-HHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 014304 328 GLLFGAR-MCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 328 ~~~~~~~-~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 406 (427)
....+.. .+..+..+..+.+++|+|||+.|+++.|++..++++++++.|++.+++.+..+....+.+++++++++.+++
T Consensus 353 ~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~ 432 (451)
T PF00083_consen 353 VFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFV 432 (451)
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhe
Confidence 2122111 222344567889999999999999999999999999999999998877766554566788888888888888
Q ss_pred hhccccCCCCcccccccc
Q 014304 407 MLIPFETKGQELSDTVDF 424 (427)
Q Consensus 407 ~~l~pEtk~~~l~e~~~~ 424 (427)
+++.||||||++||+.++
T Consensus 433 ~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 433 YFFLPETKGKTLEEIQEM 450 (451)
T ss_pred eEEEeeCCCCCHHHHHhh
Confidence 888999999999999876
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=317.96 Aligned_cols=366 Identities=23% Similarity=0.279 Sum_probs=258.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
|++|||++++++.+++.++++++++++|..+++++|+++|+|.|+. .++..|.+|++|++.||.+.+..+.++.+|..+
T Consensus 114 d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~ 193 (513)
T KOG0254|consen 114 DRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILL 193 (513)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999987 467788999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCC
Q 014304 105 EAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~-~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
+....+..... .+||.++.+..+|+++..+..+++|||||||.++||.+||++.++++++.++.+ ...+..
T Consensus 194 ~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~-~~~~~~------- 265 (513)
T KOG0254|consen 194 GYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED-VEVELE------- 265 (513)
T ss_pred HHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc-hHHHHH-------
Confidence 86666654322 489999999999999887778899999999999999999999999998743111 000000
Q ss_pred CCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccCCCCCCc
Q 014304 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAY-YAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
+.+ . ....+. ...+.+ ..+.++++++.+++.++...+...|.++. .....+.+.+....
T Consensus 266 -~~~--~---~~~~~~---~~~~~~---~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~-------- 325 (513)
T KOG0254|consen 266 -LLK--I---KLLVEA---EVAEGK---ASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA-------- 325 (513)
T ss_pred -HHH--H---HHHHhh---hccccc---ccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc--------
Confidence 000 0 000000 000000 13556777667777765555444333332 22222222222111
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh--hc--c--------hhHHHHHH
Q 014304 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQ--S--------NILTTGLL 330 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~--~~--~--------~~~~~~~~ 330 (427)
+..... ....++.++..+.+.+++.+++||+|||++++.+.....++.+.++. .. . .+......
T Consensus 326 ---g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (513)
T KOG0254|consen 326 ---GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFL 401 (513)
T ss_pred ---CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHH
Confidence 011111 45566777888889999999999999999998887766655554432 11 0 11111211
Q ss_pred HH-HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH-HHhh
Q 014304 331 FG-ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSIL-SVML 408 (427)
Q Consensus 331 ~~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~~ 408 (427)
.. ...+..+..+++|.+.+|+||.++|+++.+++..++++.+++....++.+....+....+..|+..+....+ ++++
T Consensus 402 ~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~ 481 (513)
T KOG0254|consen 402 CLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFF 481 (513)
T ss_pred HHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheE
Confidence 11 223344555789999999999999999999999999999888877766665543313456667766666666 7888
Q ss_pred ccccCCCCccccccc
Q 014304 409 IPFETKGQELSDTVD 423 (427)
Q Consensus 409 l~pEtk~~~l~e~~~ 423 (427)
+.|||||+++||+.+
T Consensus 482 ~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 482 FVPETKGLTLEEINE 496 (513)
T ss_pred EcccCCCCcHHHHHH
Confidence 889999999999765
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=287.08 Aligned_cols=366 Identities=23% Similarity=0.283 Sum_probs=261.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcch-------hHHHHHHHHHHhhhccccchhhh-hhhhhccCCCcchhHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSP-------NYITLITLRCLVGVGLGSGHVFL-SWFLEFVPPSNRGMWMVIFSSF 97 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~-------~~~~l~v~R~l~G~g~G~~~~~~-~~~~E~~p~~~Rg~~~~~~~~~ 97 (427)
||+|||+++...++++.+++++++++. -..+|.+.|++.|+|+|+++..+ ...+|.+-+++||...+.+..+
T Consensus 109 D~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~ 188 (538)
T KOG0252|consen 109 DKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAM 188 (538)
T ss_pred hhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEe
Confidence 599999999999999999999887653 25689999999999999996654 4568999999999999999999
Q ss_pred HHHhHhHHHHHHHHhc-------CC--------CChhHHHHhhhHHHHHHHHHhhcccCcchhHhhc-CchHHHHHHHHH
Q 014304 98 WTIGSVSEAIGAWIIM-------PR--------LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLK-GRTAEAHRALEK 161 (427)
Q Consensus 98 ~~iG~~~~~~~~~~~~-------~~--------~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k-~r~~ea~~~l~~ 161 (427)
..+|.+.+.+++.++. +. .-||..+.++++|++..++.+..+|||+||-..+ +|.++|.
T Consensus 189 Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~----- 263 (538)
T KOG0252|consen 189 QGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA----- 263 (538)
T ss_pred cchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh-----
Confidence 9999888777665531 11 1299999999999999999999999999998433 3434332
Q ss_pred HHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHH
Q 014304 162 IAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY 241 (427)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y 241 (427)
++.+++.+. +. ++.+++ +. ..+..++....+..+|...+-+..+.....|+...+.+|
T Consensus 264 --~d~~k~~~~-~~--------~~~~~~--------~~---~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy 321 (538)
T KOG0252|consen 264 --GDMKKVLSV-DI--------EAESTA--------ES---DVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFY 321 (538)
T ss_pred --hcccccccc-cc--------chhhcc--------cc---CCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 112222111 00 000000 00 000111111123333433355667777888999999999
Q ss_pred HHHHHHHHhhccccCCCCCCccCCCCCCh-----hHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH
Q 014304 242 AVVLLISELSSLDTRCRSPLMFSHHPQDA-----NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP 316 (427)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~ 316 (427)
+.+++...+.+.-+ ... ..+.. ....+.++..+..++|+.+..+++|++|||+..+.++++++++.+.
T Consensus 322 ~~nL~~s~I~~~ig------~~~-~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~ 394 (538)
T KOG0252|consen 322 GQNLFQSVIFSAIG------VIP-SANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFV 394 (538)
T ss_pred ccccHHHHHHHhhc------cCC-CcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHH
Confidence 99998887654110 000 01111 1223556777788899999999999999999999999888877776
Q ss_pred HHhhcc---h-hHHHHHH-HHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHh-----hc
Q 014304 317 LVTYQS---N-ILTTGLL-FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA-----NC 386 (427)
Q Consensus 317 ~~~~~~---~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~-----~~ 386 (427)
+....+ + ....++. +...++..|..+...++++|+||+++|+++.|++.+.|..|++++.+.+.++.+ ..
T Consensus 395 ~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~ 474 (538)
T KOG0252|consen 395 IAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNI 474 (538)
T ss_pred HcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccc
Confidence 665322 1 1122222 233345567778899999999999999999999999999999999998888877 55
Q ss_pred chhHHHHHHHHHHHHHHHHHhhccccCCCCcccccccccC
Q 014304 387 HQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTS 426 (427)
Q Consensus 387 ~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l~e~~~~~~ 426 (427)
+....+++++.+++++.+..+++ ||||+|++||+.+|.+
T Consensus 475 g~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 475 GVRNVFIILAGCMLLGILFTLLI-PETKGKSLEEISNEEE 513 (538)
T ss_pred cchHHHHHHHHHHHHhHheeEEe-ecccccCHHHhcChhh
Confidence 55667888899998887777766 5999999999866543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=286.95 Aligned_cols=337 Identities=16% Similarity=0.135 Sum_probs=222.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHH--------HHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYIT--------LITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~--------l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+++.+++++++++++++++++|+.+ ++++|+++|+|.|+. ++...++.|+.|+++||++.++.+.
T Consensus 82 Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~ 161 (490)
T PRK10642 82 DKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDF 161 (490)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 6999999999999999999999999999975 899999999999998 5567888999999999999999998
Q ss_pred HHHHhHhHHHHHHHHhc--------CCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCC
Q 014304 97 FWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKT 168 (427)
Q Consensus 97 ~~~iG~~~~~~~~~~~~--------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~ 168 (427)
+..+|.++++.+...+. ..+|||++|+++++++++.++++.++||||+|+..+++.++.. ++
T Consensus 162 ~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------~~ 231 (490)
T PRK10642 162 GSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------RE 231 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------cc
Confidence 88888887765543321 3589999999988777766666778999999874332221100 00
Q ss_pred CCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014304 169 KLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 248 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 248 (427)
. .. + ++ + ..+++++++ .++.....+..++.....+|+...+.|
T Consensus 232 ~-------------~~------------------~-~~-~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p 274 (490)
T PRK10642 232 G-------------LQ------------------D-GP-K---VSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMP 274 (490)
T ss_pred c-------------cc------------------c-cc-c---CCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 00 0 123344433 334444444444556677888777777
Q ss_pred HhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH-HHh-hcch-hH
Q 014304 249 ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LVT-YQSN-IL 325 (427)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~-~~~-~~~~-~~ 325 (427)
.+.... .+.+............++.+++..+.+++.||+|||+.+..+.+...+.... ... ..++ ..
T Consensus 275 ~~l~~~----------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (490)
T PRK10642 275 SYLSHN----------LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGL 344 (490)
T ss_pred HHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 654211 0111111122233345556677788999999999999876655432222111 111 1111 11
Q ss_pred HHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHH
Q 014304 326 TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ-MTAVVLLVVVIVTSIL 404 (427)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~ 404 (427)
.....++..++.....+....+.+|+||++.|+++.|+.+.++++++.++|++.+++.+..+. ..+..+..++.+++.+
T Consensus 345 ~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~ 424 (490)
T PRK10642 345 IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI 424 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 111222222223334456678888999999999999999999999999999999988765432 3344444555556655
Q ss_pred HHhhccccCCCCcccc
Q 014304 405 SVMLIPFETKGQELSD 420 (427)
Q Consensus 405 ~~~~l~pEtk~~~l~e 420 (427)
..+++ |||+++.+++
T Consensus 425 ~~~~~-pes~~~~~~~ 439 (490)
T PRK10642 425 TGVTM-KETANRPLKG 439 (490)
T ss_pred HHHHh-ccccCCCCCC
Confidence 55554 7999887754
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=286.83 Aligned_cols=358 Identities=20% Similarity=0.208 Sum_probs=234.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc------------hhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFS------------PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMV 92 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a------------~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~ 92 (427)
||+|||++++++.+++.+++++++++ +++..++++|+++|++.|+. +....++.|+.|+++||++++
T Consensus 80 dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~ 159 (479)
T PRK10077 80 NRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVS 159 (479)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHH
Confidence 59999999999999999998888763 23567899999999999987 566788899999999999999
Q ss_pred HHHHHHHHhHhHHHHHHHHhc--------CCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHh
Q 014304 93 IFSSFWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQ 164 (427)
Q Consensus 93 ~~~~~~~iG~~~~~~~~~~~~--------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~ 164 (427)
+.+.++.+|.+++++++.... ...+||++|.+.+++.++..+..+++||||+|+..++|.+|+++.+++..+
T Consensus 160 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~ 239 (479)
T PRK10077 160 FNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG 239 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcC
Confidence 999999999988776654432 346899999999888887776677899999999989999888877776533
Q ss_pred hcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHH--HHHHHHHHHHHHH
Q 014304 165 VNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL--WLLLFGNSFAYYA 242 (427)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~y~ 242 (427)
.++.+ +.. + +..+..++ ++. ....++. .....+.. ....+.+...++.
T Consensus 240 ~~~~~---~~~--------~------~~~~~~~~------~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 289 (479)
T PRK10077 240 NTLAT---QAL--------Q------EIKHSLDH------GRK-----TGGKLLM--FGVGVIVIGVMLSVFQQFVGINV 289 (479)
T ss_pred ChhHH---HHH--------H------HHHHHHHH------hhh-----hhhhhcc--hhHHHHHHHHHHHHHHHHhChhH
Confidence 21100 000 0 00000000 000 0000111 00111111 1111222333344
Q ss_pred HHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh--h
Q 014304 243 VVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--Y 320 (427)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~--~ 320 (427)
...+.|.+.... +.+...........++..+++.+++++++||+|||+++..+.+..++..+.+.. .
T Consensus 290 ~~~~~p~i~~~~-----------g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~ 358 (479)
T PRK10077 290 VLYYAPEIFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 358 (479)
T ss_pred HHHHHHHHHHHc-----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh
Confidence 444445443211 011111123334456677888899999999999999988877666555444322 1
Q ss_pred cc-hh-HHHHHHHHHHHHHh-hhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHH------hhcchhHH
Q 014304 321 QS-NI-LTTGLLFGARMCVM-GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV------ANCHQMTA 391 (427)
Q Consensus 321 ~~-~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~------~~~~~~~~ 391 (427)
.+ .. ...........+.. ...+..+.+.+|++|++.|+++.|+++..+++++++++++.+.+. +..+....
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~ 438 (479)
T PRK10077 359 TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFS 438 (479)
T ss_pred cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccH
Confidence 11 11 11111111111111 122467899999999999999999999999999999988877554 23333456
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCcccccccc
Q 014304 392 VVLLVVVIVTSILSVMLIPFETKGQELSDTVDF 424 (427)
Q Consensus 392 ~~~~~~~~~i~~~~~~~l~pEtk~~~l~e~~~~ 424 (427)
+.+++.+++++.++.++++||||++++||..++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 471 (479)
T PRK10077 439 YWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471 (479)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 777777777777777778899999999986554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=259.28 Aligned_cols=325 Identities=16% Similarity=0.135 Sum_probs=210.7
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhcchhHH--------HHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHH
Q 014304 25 LWQNLVRMGFLGEALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFS 95 (427)
Q Consensus 25 ~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~--------~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~ 95 (427)
.||+|||+++.+++++++++++++++++|+. .++++|+++|++.|+. +....+..|+.|+++||+.++..+
T Consensus 88 ~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~ 167 (438)
T PRK09952 88 GDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQ 167 (438)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 3699999999999999999999999999987 5999999999999998 456778899999999999999999
Q ss_pred HHHHHhHhHHHHHHHHhc--------CCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcC
Q 014304 96 SFWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNK 167 (427)
Q Consensus 96 ~~~~iG~~~~~~~~~~~~--------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~ 167 (427)
.++.+|.+++..+...+. ..++||++|++.+++.++....+..+||||+|..++++.++.+
T Consensus 168 ~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~----------- 236 (438)
T PRK09952 168 VGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK----------- 236 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc-----------
Confidence 999999988765544332 2579999999999888776666678999998853321111000
Q ss_pred CCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014304 168 TKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 247 (427)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 247 (427)
+ +. ...+.+++. ++.........++....+|....|.
T Consensus 237 ~-------------------------------------~~----~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T PRK09952 237 K-------------------------------------RI----PVIEALLRH--PGAFLKIIALRLCELLTMYIVTAFA 273 (438)
T ss_pred c-------------------------------------cC----CHHHHHHHc--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 001112211 1222222333444555666665555
Q ss_pred HHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh--hc-chh
Q 014304 248 SELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQ-SNI 324 (427)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~--~~-~~~ 324 (427)
+...... .+.+.........+.+...+++..+.++++||+|||+.+..+.+++.+....... .. +..
T Consensus 274 ~~y~~~~----------~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (438)
T PRK09952 274 LNYSTQN----------LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIF 343 (438)
T ss_pred HHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 5432110 0011111111122334555667778899999999999877665544333222211 11 111
Q ss_pred HH-HHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhh-HhHhHHHHHHHHHHhhcc-h-hHHHHHHHHHHH
Q 014304 325 LT-TGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR-IGGMVCPLVAVALVANCH-Q-MTAVVLLVVVIV 400 (427)
Q Consensus 325 ~~-~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~-~~~~~~p~~~~~l~~~~~-~-~~~~~~~~~~~~ 400 (427)
.. ........++.....+..+.+.+|++|++.|+++.|+++.+++ +++.++|++.+++.+..+ . ..++.+.+.+.+
T Consensus 344 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~ 423 (438)
T PRK09952 344 WIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCL 423 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 11 1112222223333456678999999999999999999988876 799999999998877542 2 234455555666
Q ss_pred HHHHHHhhccccCC
Q 014304 401 TSILSVMLIPFETK 414 (427)
Q Consensus 401 i~~~~~~~l~pEtk 414 (427)
++.+..+.+ +||+
T Consensus 424 i~~v~~~~~-~~~~ 436 (438)
T PRK09952 424 ISAMTALLM-KDNQ 436 (438)
T ss_pred HHHHHHHHc-cccc
Confidence 666666554 5754
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-30 Score=254.36 Aligned_cols=321 Identities=17% Similarity=0.192 Sum_probs=204.4
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhcchhHH--------HHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHH
Q 014304 25 LWQNLVRMGFLGEALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFS 95 (427)
Q Consensus 25 ~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~--------~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~ 95 (427)
.||+|||+++.+++++++++++++++++|+. +++++|+++|++.|++ +....++.|+.|+++||++.++.+
T Consensus 87 ~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~ 166 (432)
T PRK10406 87 ADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQY 166 (432)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHH
Confidence 3699999999999999999999999999875 5999999999999987 567788999999999999999988
Q ss_pred HHHHHhHhHHHHHHHHhc--------CCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcC
Q 014304 96 SFWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNK 167 (427)
Q Consensus 96 ~~~~iG~~~~~~~~~~~~--------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~ 167 (427)
.+...|.++++++...+. +.+|||++|+++++++++.+..+..+||||++.. ++ .
T Consensus 167 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~--------~~---------~ 229 (432)
T PRK10406 167 VTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET--------RA---------L 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH--------hh---------h
Confidence 888888887765543322 3579999999999998887777778899987421 00 0
Q ss_pred CCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014304 168 TKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 247 (427)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 247 (427)
++ + ..++++++ .++.........+.....+|+...|.
T Consensus 230 ~~--------------------------------------~---~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~l 266 (432)
T PRK10406 230 KE--------------------------------------A---GSLKGLWR--NRRAFIMVLGFTAAGSLCFYTFTTYM 266 (432)
T ss_pred cc--------------------------------------c---ccHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 01223332 12222222333344456677777777
Q ss_pred HHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH--hh-cch-
Q 014304 248 SELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--TY-QSN- 323 (427)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~--~~-~~~- 323 (427)
|...... .+.+.........+......++..+.++++||+|||+.+.....+.++...+.. .. .++
T Consensus 267 p~~l~~~----------~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (432)
T PRK10406 267 QKYLVNT----------AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSP 336 (432)
T ss_pred HHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 6543211 011111111122233344456667789999999999877665443332222211 11 112
Q ss_pred hHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhH-hHhHHHHHHHHHHhhcch-hHHHHHHHHHHHH
Q 014304 324 ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQ-MTAVVLLVVVIVT 401 (427)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~-~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~i 401 (427)
........+..++.....+..+.+.+|+||++.|+++.|+++.++++ .+...|++...+ +..+. ...+++.+++.++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i 415 (432)
T PRK10406 337 YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVV 415 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHH
Confidence 11111122121222222345678899999999999999999999886 355588877744 43332 2334444555566
Q ss_pred HHHHHhhccccCCCCcc
Q 014304 402 SILSVMLIPFETKGQEL 418 (427)
Q Consensus 402 ~~~~~~~l~pEtk~~~l 418 (427)
+.+..++ .|++||+.
T Consensus 416 ~~~~~~~--l~~~~~~~ 430 (432)
T PRK10406 416 AFLVSLM--LHRKGKGM 430 (432)
T ss_pred HHHHHHH--hhhccccc
Confidence 6555554 36677765
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=257.80 Aligned_cols=364 Identities=22% Similarity=0.256 Sum_probs=234.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFS---PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a---~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||++++.+.+++.++.++..++ .++++++++|+++|+|.|.. +....++.|+.|+++|++.+++.+.+..+|
T Consensus 96 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 175 (481)
T TIGR00879 96 DRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFG 175 (481)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHH
Confidence 69999999999999999999988554 44568999999999999886 456778899999999999999999999999
Q ss_pred HhHHHHHH---HHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccc
Q 014304 102 SVSEAIGA---WIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 102 ~~~~~~~~---~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
.++++++. .......+||+.|.+.+++.++..+..+++||+|+++..+++.+++++..++..+.+.++ .+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~- 251 (481)
T TIGR00879 176 ILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED---KELLD- 251 (481)
T ss_pred HHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc---HHHHH-
Confidence 99998887 444456799999999877777776667789999999988888777766655543221110 00000
Q ss_pred cccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCc--chhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014304 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS--KLART-TILLWLLLFGNSFAYYAVVLLISELSSLDT 255 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~-~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~ 255 (427)
.. .......+. + + +..+. .+.++++. +..++ .+.....++.+....+....+.+.+....
T Consensus 252 ~~---------~~~~~~~~~--~-~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 314 (481)
T TIGR00879 252 EL---------ELIDIKRSI--E-K-RSVQP---SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENA- 314 (481)
T ss_pred HH---------HHHHHHHHH--H-H-hhccc---cHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHc-
Confidence 00 000000000 0 0 00000 12233321 12222 22222222322222222333334332111
Q ss_pred CCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---h-hcc------hhH
Q 014304 256 RCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---T-YQS------NIL 325 (427)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~---~-~~~------~~~ 325 (427)
+.+............+..+++.++.+++.||+|||+.+..+..+.++....+. . ..+ ...
T Consensus 315 ----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (481)
T TIGR00879 315 ----------GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNV 384 (481)
T ss_pred ----------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Confidence 01111112334455666778889999999999999988776655544433332 1 111 111
Q ss_pred HHHHHHH-HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 014304 326 TTGLLFG-ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSIL 404 (427)
Q Consensus 326 ~~~~~~~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 404 (427)
....... ..++..+..+..+.+.+|.+|++.|+++.|+.+...+++++++|.+.+.+.+..+....+.+++++++++++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i 464 (481)
T TIGR00879 385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLI 464 (481)
T ss_pred HHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHH
Confidence 1111111 112222233556788899999999999999999999999999999999887765544566778888888888
Q ss_pred HHhhccccCCCCcccc
Q 014304 405 SVMLIPFETKGQELSD 420 (427)
Q Consensus 405 ~~~~l~pEtk~~~l~e 420 (427)
+.+++.||+|+++++|
T Consensus 465 ~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 465 FVYFFLPETKGRTLEE 480 (481)
T ss_pred HHheecccCCCCChhh
Confidence 8877789999988765
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=232.60 Aligned_cols=309 Identities=14% Similarity=0.086 Sum_probs=203.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHHHHHhHhHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~ 105 (427)
||+|||+.++.+......+......++|+.+++++|+++|+|.|..........|+.|+++|++++++.+.+..+|.+++
T Consensus 51 Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~ 130 (368)
T TIGR00903 51 DRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFA 130 (368)
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999998776655554443333334799999999999999998655455556899999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHhhhHHHHHH-HHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCCC
Q 014304 106 AIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 106 ~~~~~~~~~~~~WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
+++...+....|||+.|.+.++++++. ++.++++||+|++. ++..+.++
T Consensus 131 ~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~---~~~~~~~~--------------------------- 180 (368)
T TIGR00903 131 LAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA---AEGFGFKD--------------------------- 180 (368)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCcchHH---------------------------
Confidence 988888777889999999877766554 44566899999862 11000000
Q ss_pred CCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccC
Q 014304 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS 264 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 264 (427)
....+++++++ +..+..+..+++....+|++..|.|.+....+
T Consensus 181 -------------------------~~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g--------- 223 (368)
T TIGR00903 181 -------------------------AVKEFGALAGR---KDLWIIGAILGFGVALFDNLAIWLEAALRPAG--------- 223 (368)
T ss_pred -------------------------HHHHHHHHHcC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
Confidence 00123344443 22344555566777788888888887663211
Q ss_pred CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChh---HHHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhh
Q 014304 265 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK---LSITI-MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGA 340 (427)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (427)
.+. . ......+....+.+..+++.||..|| ..... .....+.....+....+.........+..++..+.
T Consensus 224 --~s~-~---~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (368)
T TIGR00903 224 --LED-I---AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPA 297 (368)
T ss_pred --CCh-H---HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhh
Confidence 111 1 11222333344555567888887543 33222 22222222222222222222233333344445556
Q ss_pred hHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014304 341 FTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 341 ~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
++..+.+++|++|++.|+++.|+.+..+|++++++|...+.+.. +....+.+++.+.+++++.+.++
T Consensus 298 ~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~~ 364 (368)
T TIGR00903 298 YAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALLL 364 (368)
T ss_pred HHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhC
Confidence 66788999999999999999999999999999999988887763 43456777788888877776543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-26 Score=226.96 Aligned_cols=328 Identities=16% Similarity=0.225 Sum_probs=197.9
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhcchhHH--------HHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHH
Q 014304 25 LWQNLVRMGFLGEALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFS 95 (427)
Q Consensus 25 ~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~--------~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~ 95 (427)
.||+|||+.++.+..++.+++++.++++|+. +++++|+++|++.|.. +....++.|+.|+++||+.+++..
T Consensus 80 ~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~ 159 (434)
T PRK15075 80 IDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQS 159 (434)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHH
Confidence 3699999999999999999999999999987 4799999999999987 456678899999999999999988
Q ss_pred HHHHHhHhHHHHHHHHh--------cCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcC
Q 014304 96 SFWTIGSVSEAIGAWII--------MPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNK 167 (427)
Q Consensus 96 ~~~~iG~~~~~~~~~~~--------~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~ 167 (427)
....+|..+++.++..+ ....|||++|+++.+..++....+...||++++...+++
T Consensus 160 ~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---------------- 223 (434)
T PRK15075 160 ASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR---------------- 223 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc----------------
Confidence 88888777666554443 246799999998765544434434455665433210000
Q ss_pred CCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014304 168 TKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 247 (427)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 247 (427)
+ + .+ ..++.+. +.++.........+.+...++....|.
T Consensus 224 -~-~-----------------------------------~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (434)
T PRK15075 224 -P-S-----------------------------------MR---EIFRSLA--ANWRIVLAGMLMVAMTTVSFYLITVYT 261 (434)
T ss_pred -c-c-----------------------------------cc---cHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 0011111 111222222223333455566666666
Q ss_pred HHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH-H-hhcchhH
Q 014304 248 SELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL-V-TYQSNIL 325 (427)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~-~-~~~~~~~ 325 (427)
|...... .+.+.........+..+..+++..+.+++.||+|||+.+..+...+....... . ...++..
T Consensus 262 p~~l~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (434)
T PRK15075 262 PTFGKTV----------LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSF 331 (434)
T ss_pred HHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 6543210 00111111222344556677888899999999999998766544332222111 1 1111111
Q ss_pred -HH-HHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhH-hHhHHHHHHHHHHhhcchh-HH--HHHHHHHH
Q 014304 326 -TT-GLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQM-TA--VVLLVVVI 399 (427)
Q Consensus 326 -~~-~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~-~~~~~p~~~~~l~~~~~~~-~~--~~~~~~~~ 399 (427)
.. .......++.....+..+.+.+|.+|++.|+++.|+.+.+++. ++.++|.+.+.+.+..+.. .. +++++.+
T Consensus 332 ~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~- 410 (434)
T PRK15075 332 ARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAV- 410 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHH-
Confidence 11 1111112222222344568899999999999999999888876 5888999999888776531 11 2222222
Q ss_pred HHHHHHHhhccccCCCCccccccc
Q 014304 400 VTSILSVMLIPFETKGQELSDTVD 423 (427)
Q Consensus 400 ~i~~~~~~~l~pEtk~~~l~e~~~ 423 (427)
++.+..+ ..++-.+..++.++.
T Consensus 411 -~~~~~~~-~~~~~~~~~~~~~~~ 432 (434)
T PRK15075 411 -CGLIATL-VLYRRRGARLQAAEA 432 (434)
T ss_pred -HHHHHHH-Hhccccchhhhhhhc
Confidence 2222233 334766766665543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=225.54 Aligned_cols=333 Identities=17% Similarity=0.160 Sum_probs=209.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+++.++.++++++.+..++++++.+++++|++.|++.|.. +....++.|+.|+++|+++.++...++.+|.++
T Consensus 78 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~ 157 (426)
T PRK12307 78 DKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII 157 (426)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH
Confidence 6999999999999999999999999999999999999999999876 456678899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.+...+....+||+.+++..++.++.+......||+++|...+.+ +.++. +
T Consensus 158 ~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~~~---------------~ 210 (426)
T PRK12307 158 AAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS------------GKGKH---------------S 210 (426)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh------------ccccc---------------c
Confidence 88776666667899999998776655555444557888765321100 00000 0
Q ss_pred CCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccC
Q 014304 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS 264 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 264 (427)
+ ... +. ....++++++++..+.........+.....++....+.|......
T Consensus 211 ~----~~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 261 (426)
T PRK12307 211 Q----SAW------------SV---FSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE---------- 261 (426)
T ss_pred c----cch------------hh---hhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 0 000 00 001344555544433333332222222222233333444332111
Q ss_pred CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-hcchhHHHH-HHHHHHHHHhhhhH
Q 014304 265 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQSNILTTG-LLFGARMCVMGAFT 342 (427)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~ 342 (427)
+.+.........+..++.+++.++.+++.||+|||+.+..+...+.+....+.. ..+...... ..+...+...+..+
T Consensus 262 -g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (426)
T PRK12307 262 -GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGG 340 (426)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhH
Confidence 011111122233445667888899999999999999887766555444333322 122221111 11111122223334
Q ss_pred hHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHhhccccCCC
Q 014304 343 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT-AVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 343 ~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
..+.+..|.+|++.|+++.|+++.++++++.++|.+.+++.+..+... .++..+..+.++.....+..||+.+
T Consensus 341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (426)
T PRK12307 341 LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRLK 414 (426)
T ss_pred HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChhhh
Confidence 566788999999999999999999999999999999998887765322 2333333333443333333456533
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=220.91 Aligned_cols=319 Identities=22% Similarity=0.280 Sum_probs=210.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+++..+.++..++.++.++++|+..+++.|++.|++.|.. +....++.|+.|+++|++.+++.+.+..+|..+
T Consensus 75 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 154 (406)
T PRK11551 75 DRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL 154 (406)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998876 456678899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHH-HHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.+........+||..+++.++..++.. ....++||+|++..++++.++.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------- 208 (406)
T PRK11551 155 ASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP-------------------------- 208 (406)
T ss_pred HHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh--------------------------
Confidence 88887666677899999988776554443 345568999876422211100000
Q ss_pred CCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 014304 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
..+.+++++..++....+..++.....++....+.|.+....+
T Consensus 209 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-------- 251 (406)
T PRK11551 209 -----------------------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQG-------- 251 (406)
T ss_pred -----------------------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------
Confidence 0011111111122222333333334445555555555432111
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHh
Q 014304 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 343 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (427)
.+...........++..+++.++.+++.||+|||+.+..+.....+....+....+.+......+...++..+..+.
T Consensus 252 ---~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 328 (406)
T PRK11551 252 ---LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSV 328 (406)
T ss_pred ---CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHH
Confidence 11111122233445677888999999999999999887655544443333322222222222222233333445567
Q ss_pred HHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHhhcc
Q 014304 344 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT-AVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 344 ~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~l~ 410 (427)
.+.+..|.+|++.|+++.|+.+..+++++.++|.+.+++.+..+... .+...+.+.+++++..+.+.
T Consensus 329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999998877643322 23334444455555555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=222.60 Aligned_cols=319 Identities=17% Similarity=0.161 Sum_probs=200.4
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHh
Q 014304 25 LWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 25 ~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~ 103 (427)
.||+|||+.+..+++++++++++.++++|++++++.|++.|++.|+. +....++.|+.|+++||+.+++.+..+.+|.+
T Consensus 67 ~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~ 146 (412)
T TIGR02332 67 LAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMA 146 (412)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999987 45567789999999999999999999999999
Q ss_pred HHHHHHHHhc------CCCChhHHHHhhhHHHHHHH-HHhhcccCcch---hHhhcCchHHHHHHHHHHHhhcCCCCCCc
Q 014304 104 SEAIGAWIIM------PRLDWRWLLGLSSIPSFILL-AFLGFQPESPR---YLCLKGRTAEAHRALEKIAQVNKTKLPNG 173 (427)
Q Consensus 104 ~~~~~~~~~~------~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP~---~L~~k~r~~ea~~~l~~~~~~~~~~~~~~ 173 (427)
+++.++..+. ...|||+.|.+.++++++.. +.++++||+|+ |+..+ |.+...+++++. ..+.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~----~~~~~~~~~~~~-~~~~--- 218 (412)
T TIGR02332 147 LGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEE----DKKALKEMIDND-QLTL--- 218 (412)
T ss_pred HHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHH----HHHHHHHHHHhc-cccc---
Confidence 9888766543 23699999999988877654 45567899994 44221 111111111110 0000
Q ss_pred ccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014304 174 KLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSL 253 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~ 253 (427)
++ +++ .. ++ +.......++++++++ .+.....+++....++++..|.|.+.+.
T Consensus 219 ----------~~---~~~--~~-------~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~ 271 (412)
T TIGR02332 219 ----------EQ---PEG--AF-------AH-AAMPQRSMLREIFTPA----IMLYTLAYFCLTNTLSAINIWTPQILQS 271 (412)
T ss_pred ----------cc---ccc--cc-------cc-ccccHHHHHHHhcChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 000 00 00 0000011334444332 2333444455666677777777765532
Q ss_pred ccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 014304 254 DTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI-TIMFTLSCLFLLPLVTYQSNILTTGLLFG 332 (427)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (427)
.. .+.+............+..++|.++.+++.||++||+.. .......++.........+..........
T Consensus 272 ~~---------~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (412)
T TIGR02332 272 FN---------QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIM 342 (412)
T ss_pred cC---------CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 10 000111112223445666788899999999999977743 33332322222111111122111111111
Q ss_pred HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc
Q 014304 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~ 387 (427)
..++.....+..+....|.+|++.|+++.|+.+.++++|++++|.+.+.+.+..+
T Consensus 343 ~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 343 ASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred HHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence 1111122223456777899999999999999999999999999999988877654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=216.33 Aligned_cols=317 Identities=19% Similarity=0.249 Sum_probs=199.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.++++.++..++.++.++++++..+++.|++.|++.|.. +....++.|+.|+++|++..++.+..+.+|.++
T Consensus 72 Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 151 (405)
T TIGR00891 72 DRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV 151 (405)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999876 456778899999999999999999999999999
Q ss_pred HHHHHHHhcCCCC--hhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccC
Q 014304 105 EAIGAWIIMPRLD--WRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 182 (427)
Q Consensus 105 ~~~~~~~~~~~~~--WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (427)
++.+...+....+ ||+.+.+.+++.++..+....+||+|++...+++.++.++..++..+... ..
T Consensus 152 ~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------ 218 (405)
T TIGR00891 152 AAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH-------RI------ 218 (405)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccch-------hh------
Confidence 8887766554444 99999998887777666667889999876433222222111111110000 00
Q ss_pred CCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 014304 183 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
+. .. ++.....+... ++.+.................++...+.|......
T Consensus 219 -~~---------~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 268 (405)
T TIGR00891 219 -AN---------IV-----------MTLAAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-------- 268 (405)
T ss_pred -hh---------hh-----------hhhhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH--------
Confidence 00 00 00000000000 11111111111122222222222222222221100
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHhhhh
Q 014304 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN-ILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 341 (427)
.+.+............+..+++.++.+++.||+|||+.+..+...+.+.........++ +......+...++..+.+
T Consensus 269 --~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (405)
T TIGR00891 269 --LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIW 346 (405)
T ss_pred --hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccch
Confidence 00111111122334566778889999999999999998877665543332222222222 222222222333334455
Q ss_pred HhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc
Q 014304 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~ 387 (427)
+..+.+.+|.+|++.|+++.|+.+.++++++.++|.+.+++.+..+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 347 GILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred hhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6677889999999999999999999999999999999998888755
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=211.42 Aligned_cols=319 Identities=25% Similarity=0.308 Sum_probs=211.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+.++..++.++..+++|+..+++.|++.|++.|.. +....++.|+.|+++|++..++.+....+|..+
T Consensus 77 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 156 (398)
T TIGR00895 77 DRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAV 156 (398)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHH
Confidence 6999999999999999999999999999999999999999999876 566788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHH-HHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSF-ILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~-i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.+...+....+||..+.+.++..+ ...+...++||+|++...+ +.+++++..++....+..+. +.+.
T Consensus 157 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~ 226 (398)
T TIGR00895 157 GGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA---------QSAL 226 (398)
T ss_pred HHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc---------cccc
Confidence 98887777777899999988864444 3445566789999987655 44555544444332211000 0000
Q ss_pred CCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 014304 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
.+ + +.+.++ ....++.+++++..++....+...+.....++....+.|.+....
T Consensus 227 ~~-----~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 280 (398)
T TIGR00895 227 PE-----Q---------KATQGT---KRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVEL--------- 280 (398)
T ss_pred cc-----c---------ccccch---hhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 00 0 000000 011233455555555555555555555556666666656433211
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHh
Q 014304 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 343 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (427)
+.+.........+..+..+++.++.+++.||+|||.....................+.+......++..++.....+.
T Consensus 281 --g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 358 (398)
T TIGR00895 281 --GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSG 358 (398)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 111111122334456677888999999999999995444333322222222221222222223333334444555677
Q ss_pred HHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHH
Q 014304 344 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 344 ~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l 382 (427)
.+.+.+|.+|++.|+++.|+.+.++++++.++|.+.+++
T Consensus 359 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 359 LYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 889999999999999999999999999999999887754
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=215.31 Aligned_cols=341 Identities=14% Similarity=0.087 Sum_probs=206.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+.++.++.+++.++.++++|+..+++.|++.|++.|.. +....++.|+.|+++||+.+++.+....+|.++
T Consensus 83 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~ 162 (434)
T PRK11663 83 DRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGAL 162 (434)
T ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998876 456678899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHH-HHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.+...+....+||+.+++.+++.++. ++..+++||+|++.......++.++ +.
T Consensus 163 ~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------~~-- 218 (434)
T PRK11663 163 IPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD----------------------AL-- 218 (434)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc----------------------cc--
Confidence 8887766666789999999888776554 3445578998865311100000000 00
Q ss_pred CCCCCCccchhccccCCCCCccCCCchhhHHH-HhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 014304 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFL-MLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
+..+ + .++.+.... ..++ ..++. ++.+......+.....++++..|.|......
T Consensus 219 ~~~~---~---------~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-------- 273 (434)
T PRK11663 219 ELAQ---Q---------QEGAGLSRK--EILTKYVLLN---PYIWLLSFSYVLVYVVRAAINDWGNLYMSET-------- 273 (434)
T ss_pred ccch---h---------ccccCCChh--hhHHHHHhcC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 0000 0 000000000 0011 11111 1122222223334445555555655443210
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh--Ch-hHHHHHHHHHHHHHHHH-HHhhcch-hHHHHHHHHHHHHH
Q 014304 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA--GR-KLSITIMFTLSCLFLLP-LVTYQSN-ILTTGLLFGARMCV 337 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~--GR-R~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 337 (427)
.+.+............++..++.++++++.||+ +| |................ ......+ .......+...++.
T Consensus 274 --~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 351 (434)
T PRK11663 274 --LGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFV 351 (434)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence 011111111223344566788899999999998 33 33222211111111111 1111111 11111122222222
Q ss_pred hhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 014304 338 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 338 ~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~ 417 (427)
.+.......+.+|.+|++.|+++.|+.+..+++|+.++|.+.+++.+..+....+...+++.+++++..+...++.+++.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (434)
T PRK11663 352 FGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPRE 431 (434)
T ss_pred hhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Confidence 22333445678999999999999999999999999999999999988766555666777777676666655445555544
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=211.11 Aligned_cols=334 Identities=17% Similarity=0.013 Sum_probs=211.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSS-----FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~-----~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
||+|||+.+..+..+..++.+..+ ..++++.+++.|++.|++.|.. +....++.|+.|+++|++..++.+....
T Consensus 77 dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (417)
T PRK10489 77 DRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVR 156 (417)
T ss_pred hhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHh
Confidence 699999999888777766655443 2578899999999999987764 4556677899999999999999999999
Q ss_pred HhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccccccc
Q 014304 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179 (427)
Q Consensus 100 iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~ 179 (427)
+|..+++.++..+....+||+.+.+.++..++..+..+.+||+|+.. +++.++ .
T Consensus 157 ~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~----~-------------------- 210 (417)
T PRK10489 157 LGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPREHP----L-------------------- 210 (417)
T ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cccccc----h--------------------
Confidence 99998888776665557899999888777666655566778765410 000000 0
Q ss_pred ccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 014304 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
++....++..++++..+...+...... ..++...+.|.+....
T Consensus 211 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~----- 253 (417)
T PRK10489 211 ----------------------------RSLLAGFRFLLASPVVGGIALLGGLLT----MASAVRVLYPALADEV----- 253 (417)
T ss_pred ----------------------------HHHHHHHHHHHcChHHHHHHHHHHHHH----HHHhHHHhhHHHHHhc-----
Confidence 000012223333333222222211111 1222333333332110
Q ss_pred CCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhh
Q 014304 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG 339 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (427)
.+.+............++.+++.++.+++.||.++|+.+..+....++..+.+....+........++..++...
T Consensus 254 -----~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 328 (417)
T PRK10489 254 -----WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAI 328 (417)
T ss_pred -----cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 001111111222334566777888889999987777666655544443333333222222111222222222222
Q ss_pred hhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCCccc
Q 014304 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELS 419 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l~ 419 (427)
.....+.+..|..|++.|+++.|+.+....+|+.++|.+.+.+.+..+....+..++.+.++..++.....||+|++++|
T Consensus 329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (417)
T PRK10489 329 SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQT 408 (417)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 23455788999999999999999999999999999999999998877765666666766665555665666899999999
Q ss_pred ccccccCC
Q 014304 420 DTVDFTSD 427 (427)
Q Consensus 420 e~~~~~~~ 427 (427)
|.++|.+|
T Consensus 409 ~~~~~~~~ 416 (417)
T PRK10489 409 PPEVDASD 416 (417)
T ss_pred cccCCCCC
Confidence 99999987
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=204.51 Aligned_cols=333 Identities=18% Similarity=0.186 Sum_probs=202.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+.++.++..++.++.++++|+++++++|++.|++.|.. +....++.|+.|+++|++..++.+....+|.++
T Consensus 54 d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 133 (399)
T TIGR00893 54 DRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII 133 (399)
T ss_pred HhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHH
Confidence 6999999999999999999999999999999999999999998876 556778899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHH-hhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.+...+....+||+.+.+.++..++..+. .+..||+|+-- +...++.++...+ +. . .+.
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~------~----~~~ 195 (399)
T TIGR00893 134 GGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWLTEEEKYIVVG------GL------L----AEQ 195 (399)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccCCHHHHhhcch------hh------c----ccc
Confidence 9888777666789999999888776665443 44567776421 1111111000000 00 0 000
Q ss_pred CCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 014304 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
++. + +.++. ....+++++.+. .+......+.....++....+.+......
T Consensus 196 ~~~--------------~-~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 245 (399)
T TIGR00893 196 QGK--------------G-PSTPK---KYQIKELLKDRR---VWGLALGQFLVNIGLGFFLTWFPTYLVQE--------- 245 (399)
T ss_pred ccc--------------c-ccCCC---ccchHHHhcCHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------
Confidence 000 0 00000 012233333222 22222223333334444444444322110
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhH--HHHHHH--HHHHHH--HHHHHhh-cchhHHHHHHHHHHHH
Q 014304 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL--SITIMF--TLSCLF--LLPLVTY-QSNILTTGLLFGARMC 336 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~--~~~~~~--~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 336 (427)
.+.+.........+..+..+++.++.+++.||+|||+ ...... ....+. ....... .+.............+
T Consensus 246 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (399)
T TIGR00893 246 -RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFF 324 (399)
T ss_pred -hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 0011111112233445667788899999999999996 211111 111111 1111111 1111111212222222
Q ss_pred HhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHh
Q 014304 337 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVM 407 (427)
Q Consensus 337 ~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~ 407 (427)
..+..+..+.+.+|.+|++.|+++.|+.+.+.++++.++|.+.+++.+..+ ....+.+.+.+.+++.+..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 325 GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 233467789999999999999999999999999999999999998887765 44455555666555555443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=202.74 Aligned_cols=296 Identities=19% Similarity=0.223 Sum_probs=189.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHH--------HHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~--------~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+++..+.++..++.++.++++|+. .++++|+++|++.|.. +....++.|+.|+++|++..+..+.
T Consensus 60 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 139 (394)
T TIGR00883 60 DRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQV 139 (394)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHH
Confidence 699999999999999999999999999876 4899999999999876 5567788999999999999999999
Q ss_pred HHHHhHhHHHHHHHHhc--------CCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCC
Q 014304 97 FWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKT 168 (427)
Q Consensus 97 ~~~iG~~~~~~~~~~~~--------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~ 168 (427)
+..+|.++++.+..... ..++||+.+.+.++..++.......+||+|++...+++ +
T Consensus 140 ~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~ 203 (394)
T TIGR00883 140 GAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK----------------H 203 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc----------------c
Confidence 99999988877654332 35789999998887776666656677888764211100 0
Q ss_pred CCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014304 169 KLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 248 (427)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 248 (427)
+.+ + ..+++.++++. +.........+.....++....+.|
T Consensus 204 ~~~----------------------------------~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (394)
T TIGR00883 204 KKK----------------------------------R-----GPIRETLTKHR-KPFLLGLGLVIATTTTFYLITTYLP 243 (394)
T ss_pred ccc----------------------------------c-----CCHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 01112222111 1222233333334444444444444
Q ss_pred HhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHH--HHHHhh-cchh-
Q 014304 249 ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFL--LPLVTY-QSNI- 324 (427)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~--~~~~~~-~~~~- 324 (427)
...... .+.+.........+..+...++..+.+++.||+|||+.+........... ...... .++.
T Consensus 244 ~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (394)
T TIGR00883 244 TYLTQT----------LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFT 313 (394)
T ss_pred HHHHHh----------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 332110 00111111222334456677788889999999999997764433332222 111111 1222
Q ss_pred HHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHh-hHhHhHHHHHHHHHHhhcc
Q 014304 325 LTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~-~~~~~~~p~~~~~l~~~~~ 387 (427)
..........++.....+..+.+.+|++|++.|+++.|+.+.++ .+++.++|.+.+.+.+..+
T Consensus 314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 314 LFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 21122222223333455677899999999999999999976665 4788899999998887765
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-23 Score=207.29 Aligned_cols=346 Identities=18% Similarity=0.230 Sum_probs=199.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+.++..++.++.++++|+..++++|++.|++.|+. .....++.|+.|+++|++..++....+.+|..+
T Consensus 80 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 159 (496)
T PRK03893 80 DRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV 159 (496)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998876 456678899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.+...+....+||+.+.+.+++.++.++....+||+++|...+++.++.++..+...+.+++. . ......
T Consensus 160 ~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~----- 231 (496)
T PRK03893 160 AAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRI-I--NILLTL----- 231 (496)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHH-H--HHHHHH-----
Confidence 98887777778899999998777666555556678999887543222211111111100000000 0 000000
Q ss_pred CCCCCccchhccccCCCCCccCCCchh--------hH---HHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014304 185 GERAPPELVHLLSSNGGNKTTEGKSGL--------SL---FLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSL 253 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~ 253 (427)
............ ........ .. +....+++.+.....+....+......++...+.|.....
T Consensus 232 --~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~ 304 (496)
T PRK03893 232 --AAAAALWFCFAG-----NLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKT 304 (496)
T ss_pred --HHHHHHHHHHHh-----hhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 000000000000 00000000 00 0000000010000111111111111111223333433210
Q ss_pred ccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh-cchhHHH-HHHH
Q 014304 254 DTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-QSNILTT-GLLF 331 (427)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~ 331 (427)
. .+.+............++..++.++.+++.||+|||+.+..+..+..+..+.+... ....... ...+
T Consensus 305 ~----------~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (496)
T PRK03893 305 D----------LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF 374 (496)
T ss_pred h----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 0 01111112223344566677888999999999999998776655444333322221 1221111 1122
Q ss_pred HHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHH
Q 014304 332 GARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLV 396 (427)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~ 396 (427)
...++..+.......+..|.+|++.|+++.|+.+..+.+|+.++|.+.+.+.+..+....+...+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~ 439 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLS 439 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 22222233345667788999999999999999999999999999999998887766444443433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=197.27 Aligned_cols=309 Identities=14% Similarity=0.071 Sum_probs=195.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+.++..++++..++++|+++++++|+++|++.+.. +....++.|+.|+++|+++.++......+|..+
T Consensus 69 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~i 148 (390)
T PRK03545 69 SNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVL 148 (390)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998775 455678899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHH-hhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.++..+....+||+.|.+.++.+++.... +..+||.|+ + +.++ .
T Consensus 149 g~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~-~~~~-~--------------------------- 195 (390)
T PRK03545 149 GLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS----E-HSGS-L--------------------------- 195 (390)
T ss_pred HhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----C-Ccch-H---------------------------
Confidence 8888777666789999999988776655433 445666542 0 0000 0
Q ss_pred CCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCc
Q 014304 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS-ELSSLDTRCRSPLM 262 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~-~l~~~~~~~~~~~~ 262 (427)
...+++++++..+.... ..+.....+++...+.+ .+.+..
T Consensus 196 ----------------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~-------- 236 (390)
T PRK03545 196 ----------------------------KSLPLLFRRPALVSLYL---LTVVVVTAHFTAYSYIEPFVQQVA-------- 236 (390)
T ss_pred ----------------------------HHHHHHHhCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 01112222222111111 11112222222222222 222100
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhH
Q 014304 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT 342 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (427)
+.+.........+..+..+++.++.+++.||.|||.....................+.+..........++..+...
T Consensus 237 ---g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~ 313 (390)
T PRK03545 237 ---GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGL 313 (390)
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchH
Confidence 01111112223344567788899999999999998765443332222221112222222211212222222222223
Q ss_pred hHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 014304 343 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 343 ~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
....+..|..| +.|+++.|+.+...++|..++|.+.+.+.+..+....+...+.+.+++.++.....
T Consensus 314 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 314 AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 34556677777 58899999999999999999999999988887766666666666666666655543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=206.90 Aligned_cols=339 Identities=13% Similarity=0.096 Sum_probs=197.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSF-----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~-----a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
||+|||+.+..++++++++.+..++ ++|+.+++++|++.|++.|.. +....++.|+.|+++||+++++.+....
T Consensus 89 Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~ 168 (467)
T PRK09556 89 DGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHN 168 (467)
T ss_pred hccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccc
Confidence 6999999998888887777766554 689999999999999998865 5666788999999999999999999999
Q ss_pred HhHhHHHHHHHHhcCC---CChhHHHHhhhHHHHHHHHH-hhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccc
Q 014304 100 IGSVSEAIGAWIIMPR---LDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL 175 (427)
Q Consensus 100 iG~~~~~~~~~~~~~~---~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~ 175 (427)
+|.++++++....... .+||..|.+.++++++..+. +++.+|+|+.. +..++ ++..+ + ..+
T Consensus 169 lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~~~---~----~~~---- 233 (467)
T PRK09556 169 LGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEIFG---E----PIS---- 233 (467)
T ss_pred hhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhccc---C----ccc----
Confidence 9999887765443322 26999988877776655433 44556766421 11000 00000 0 000
Q ss_pred ccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHH-HhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014304 176 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFL-MLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD 254 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 254 (427)
+ + + ..+ ++++ ......+. ..++. +..+.+....+.....+++...|.|......
T Consensus 234 ---------~-~---~---~~~-----~~~~-~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~ 288 (467)
T PRK09556 234 ---------E-E---D---KET-----ESTD-MTKWQIFVEYVLKN---PVIWLLCFANIFLYIVRIGIDNWSPVYAFQE 288 (467)
T ss_pred ---------h-h---h---hcc-----cccc-CcHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 0 0 000 0000 00000111 12221 1233333344445555666666766433110
Q ss_pred cCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH-HHhhcchh-HHHHHHHH
Q 014304 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LVTYQSNI-LTTGLLFG 332 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~ 332 (427)
.+.+............++.+++.++.|++.||+|||+............... .....++. ...+..+.
T Consensus 289 ----------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (467)
T PRK09556 289 ----------LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA 358 (467)
T ss_pred ----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 0111111122233445667889999999999999988665433222221111 11112222 11122222
Q ss_pred HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhH-hHhHHHHHHHHHHh------------hcchhHHHHHHHHHH
Q 014304 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVA------------NCHQMTAVVLLVVVI 399 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~-~~~~~p~~~~~l~~------------~~~~~~~~~~~~~~~ 399 (427)
..++..+.....+.+..|.+|++.|+++.|+.+.++++ |++++|.+.+++.+ ..+....+.+++++.
T Consensus 359 ~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~ 438 (467)
T PRK09556 359 LGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAA 438 (467)
T ss_pred HHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHH
Confidence 22222333333456777999999999999999999997 77999999999988 223234455556666
Q ss_pred HHHHHHHhhcc-ccCC
Q 014304 400 VTSILSVMLIP-FETK 414 (427)
Q Consensus 400 ~i~~~~~~~l~-pEtk 414 (427)
+++.+..+++. -|+|
T Consensus 439 ~~~~~~~~~~~~~~~~ 454 (467)
T PRK09556 439 IGCICLMAIVAVMEER 454 (467)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 66655555442 3544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=195.61 Aligned_cols=318 Identities=14% Similarity=0.091 Sum_probs=202.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccch-hhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+++..+..+++++.+.+++++|+.+++++|+++|+|.|... ....++.|+.| ++|+++++....+...|..+
T Consensus 69 dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~ 147 (393)
T PRK09705 69 QHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGL 147 (393)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999998764 44566778887 78999999999888888888
Q ss_pred HHHHHHHhcCC-CChhHHHHhhhHHHHHHHHHhhccc-CcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccC
Q 014304 105 EAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFLGFQP-ESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 182 (427)
Q Consensus 105 ~~~~~~~~~~~-~~WR~~~~~~~i~~~i~~~~~~~lp-ESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (427)
++.+...+... .+||..+.+.+++.++..+.++... +.|+ + ++ +
T Consensus 148 g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-------------~~----------~-- 193 (393)
T PRK09705 148 GAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA---------S-------------SH----------K-- 193 (393)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc---------c-------------cc----------C--
Confidence 88776655544 4899988766665544333222111 0000 0 00 0
Q ss_pred CCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 014304 183 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
+ + .+ ....+.++ +.+......+.....+++...|.|.+....+
T Consensus 194 ----~---~-------------~~------~~~~l~~~----~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g------- 236 (393)
T PRK09705 194 ----T---T-------------TT------PVRVVFTP----RAWTLGVYFGLINGGYASLIAWLPAFYIEIG------- 236 (393)
T ss_pred ----C---C-------------cC------CcccccCH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------
Confidence 0 0 00 00001111 1222222333344556666666654432111
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhH
Q 014304 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT 342 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (427)
.+.........+..+..++|.++.+++.||.|||+....+..+..+....+.....+... .......+.....++
T Consensus 237 ----~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~ 311 (393)
T PRK09705 237 ----ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV-LWAMVCGLGLGGAFP 311 (393)
T ss_pred ----CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHhccchHH
Confidence 111111122345566778899999999999999988777655444333322211111111 111122222223334
Q ss_pred hHHhhccccC-ccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q 014304 343 VSLIYAAEIY-PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ-MTAVVLLVVVIVTSILSVMLIPFETKGQELSD 420 (427)
Q Consensus 343 ~~~~~~~Elf-Pt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l~e 420 (427)
.......+.+ |++.|++..|+.+.++++++.++|.+.+++.+..+. ...+.+.+++++...++.+.++|||.+|...+
T Consensus 312 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK09705 312 LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLWVK 391 (393)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchhcc
Confidence 4555556666 468999999999999999999999999999887653 34455556666677777778889998876543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=193.62 Aligned_cols=314 Identities=14% Similarity=0.026 Sum_probs=194.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc--------hhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFS--------PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a--------~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+++..+.+++.++++...++ .++.++++.|+++|++.+.. +....+..|+.|+++|+++.++.+.
T Consensus 76 Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 155 (399)
T PRK05122 76 DTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGI 155 (399)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhh
Confidence 69999999999999888877765543 25778999999999998876 4556777899999999999999999
Q ss_pred HHHHhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccc
Q 014304 97 FWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLV 176 (427)
Q Consensus 97 ~~~iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~ 176 (427)
....|.++++.++..+....+||..+++.++.+++........||+++ .+++.+
T Consensus 156 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------------------- 209 (399)
T PRK05122 156 ATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP---VKGERL----------------------- 209 (399)
T ss_pred hhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCccch-----------------------
Confidence 999998888888777667789999988776655444433333333321 000000
Q ss_pred cccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 014304 177 ARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTR 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~ 256 (427)
++++.++ +.++..... ....+.++....+.+......
T Consensus 210 ------------------------------------~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-- 246 (399)
T PRK05122 210 ------------------------------------PFRRVLG-RVWPYGMGL----ALASIGFGTIATFITLYYAAR-- 246 (399)
T ss_pred ------------------------------------hHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHc--
Confidence 0000011 011111111 111222222222222221100
Q ss_pred CCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 014304 257 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 336 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (427)
+..... .......+..+++.++.+.+.||+|||+.+..+....++....+....+.+.......+..++
T Consensus 247 ---------~~~~~~--~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 315 (399)
T PRK05122 247 ---------GWDGAA--LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG 315 (399)
T ss_pred ---------ccccch--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 001111 112233455667788899999999999987766555544443333322222222222222222
Q ss_pred HhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCC
Q 014304 337 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 416 (427)
Q Consensus 337 ~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~ 416 (427)
....++.......|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+....+.+.+++.+++.+...++ ++.+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 394 (399)
T PRK05122 316 FSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL-YRRAPR 394 (399)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh-cccccc
Confidence 2223344456677899999999999999999999998888888888777665566667777777776666665 466666
Q ss_pred cccc
Q 014304 417 ELSD 420 (427)
Q Consensus 417 ~l~e 420 (427)
+.+|
T Consensus 395 ~~~~ 398 (399)
T PRK05122 395 AVPE 398 (399)
T ss_pred cCCC
Confidence 6655
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-22 Score=198.05 Aligned_cols=341 Identities=15% Similarity=0.155 Sum_probs=194.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSP----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~----~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
||+|||++++.+.++.+++.+..++++ ++..+++.|++.|++.|.. +.....+.|+.|+++|++.+++.+.+..+
T Consensus 88 Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 167 (452)
T PRK11273 88 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 167 (452)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 699999999999999999998887764 7888999999999998875 44556678999999999999999999888
Q ss_pred hHh-HHHHHHHHhcCCCChhHHHHhhhHHHHHH-HHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccc
Q 014304 101 GSV-SEAIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 101 G~~-~~~~~~~~~~~~~~WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
|.. .++++........+||+.|++.+++.++. ++..+++||+|+....+ +.+|.+ ++..+
T Consensus 168 g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-------~~~~~---------- 229 (452)
T PRK11273 168 GGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYK-------NDYPD---------- 229 (452)
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhh-------hcccc----------
Confidence 864 34443322222359999999888776654 44456789998642111 111100 00000
Q ss_pred cccCCCCCCCCccchhccccCCCCCccCCCchhhHH-HHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF-LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRC 257 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ 257 (427)
+.++ +++++.+.+ ..+ +.+++.+ ..+......+.....+|+...+.|......
T Consensus 230 ---~~~~--------------~~~~~~~~~---~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~--- 283 (452)
T PRK11273 230 ---DYNE--------------KHEQELTAK---QIFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEV--- 283 (452)
T ss_pred ---cccc--------------ccCCCccHH---HHHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 0000 000000000 011 1122221 122222222333344556655666543211
Q ss_pred CCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh--ChhHHHHH-HHHHHHHHHHHHHhh-cch-hHHHHHHHH
Q 014304 258 RSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA--GRKLSITI-MFTLSCLFLLPLVTY-QSN-ILTTGLLFG 332 (427)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~--GRR~~~~~-~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ 332 (427)
.+...... .....+..+..+++.++.++++||+ |||..... ......+........ ..+ .......+.
T Consensus 284 -----~g~s~~~~--~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (452)
T PRK11273 284 -----KHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIV 356 (452)
T ss_pred -----cCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 00011111 1222344566777889999999999 56653322 111111111111111 111 111122222
Q ss_pred HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhH-HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh-hcc
Q 014304 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMV-CPLVAVALVANCHQMTAVVLLVVVIVTSILSVM-LIP 410 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~-~l~ 410 (427)
...+..+.......++.|.+|++.|+++.|+.+..+++++.+ +|.+.+++.+..+....+.+.+++++++.+... +..
T Consensus 357 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 357 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred HHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 222222223334567789999999999999999999998765 799989888876655556666666665554444 444
Q ss_pred ccCCCCc
Q 014304 411 FETKGQE 417 (427)
Q Consensus 411 pEtk~~~ 417 (427)
+|+|++.
T Consensus 437 ~~~~~~~ 443 (452)
T PRK11273 437 GEKRHHE 443 (452)
T ss_pred cccchHH
Confidence 5766543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-22 Score=200.01 Aligned_cols=320 Identities=16% Similarity=0.078 Sum_probs=184.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHHHHHhHhHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~ 105 (427)
||+|||+++..+.++++++.++.++++|+..++++|++.|++.+.......++.|+.|+++||+++++.+....+|..++
T Consensus 96 dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~ 175 (476)
T PLN00028 96 DLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVT 175 (476)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999987654444567899999999999999887777776655
Q ss_pred HHHHHHh----c-----CCCChhHHHHhhhHHHHHHHHHhhccc-CcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccc
Q 014304 106 AIGAWII----M-----PRLDWRWLLGLSSIPSFILLAFLGFQP-ESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL 175 (427)
Q Consensus 106 ~~~~~~~----~-----~~~~WR~~~~~~~i~~~i~~~~~~~lp-ESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~ 175 (427)
+.+...+ . +..|||+.|.+.+++.++..+..++++ +.|+ ++.+|.+ +..+
T Consensus 176 ~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~~~~-------- 235 (476)
T PLN00028 176 QLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------KSGT-------- 235 (476)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------hcCc--------
Confidence 4433222 1 125899999998888776554444444 3342 1111100 0000
Q ss_pred ccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014304 176 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDT 255 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~ 255 (427)
. +++ +....++..++. ++++..+..++.....++....+.|......
T Consensus 236 ---------~------------------~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~- 282 (476)
T PLN00028 236 ---------M------------------PKD--SFSKVLRYGVTN---YRTWILALTYGYSFGVELTMDNIIAEYFYDR- 282 (476)
T ss_pred ---------c------------------ccc--cHHHHHHHHHcC---chhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-
Confidence 0 000 000112222221 1222333333333333344444444332110
Q ss_pred CCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhH-------HHHHHHHHHHHHHHHHHhhcchhHHHH
Q 014304 256 RCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL-------SITIMFTLSCLFLLPLVTYQSNILTTG 328 (427)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (427)
.+.+.........+..+...++.++.|+++||+|||. .......+.++....+....+......
T Consensus 283 ---------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 353 (476)
T PLN00028 283 ---------FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIV 353 (476)
T ss_pred ---------cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 0111112222334456777888899999999998762 222222222222222222222222222
Q ss_pred HHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHh
Q 014304 329 LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN-CHQMTAVVLLVVVIVTSILSVM 407 (427)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~ 407 (427)
.+.+..++..+..+..+.+.+|+.| +.|+++.|+.+..+++|++++|++.. ... .+....+++++++.+++.++.+
T Consensus 354 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~~ 430 (476)
T PLN00028 354 VMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPVA 430 (476)
T ss_pred HHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence 2222222233334556778888765 78999999999999999999987754 222 2233556677777777766665
Q ss_pred hcc
Q 014304 408 LIP 410 (427)
Q Consensus 408 ~l~ 410 (427)
+.+
T Consensus 431 ~~~ 433 (476)
T PLN00028 431 FIH 433 (476)
T ss_pred hee
Confidence 553
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-22 Score=192.64 Aligned_cols=308 Identities=14% Similarity=0.078 Sum_probs=189.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+++..+.++..++.+..++++|+++++++|++.|++.|.. +....+..|+.| ++|+++.++......+|.++
T Consensus 63 d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 141 (377)
T TIGR00890 63 DKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFI 141 (377)
T ss_pred HHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhH
Confidence 6999999999999999999999999999999999999999999876 345566778887 56999999999999999876
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHH-hhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
.+.+........+||+.+++.++..++.... +++++|.|+- +. +++ + +.
T Consensus 142 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--------~~-----------~~~---~--------~~ 191 (377)
T TIGR00890 142 LSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQ--------LI-----------KTN---I--------EV 191 (377)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchh--------cc-----------ccC---c--------cc
Confidence 5555444455679999999988877665444 3344443320 00 000 0 00
Q ss_pred CCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 014304 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
+ ++. ...++.++++.... .....+...........+.+......
T Consensus 192 ~--------------------~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 235 (377)
T TIGR00890 192 S--------------------VKD----YTVWEMLRTPQFWV---LYLSFFLNAVSGLLLIGLYKPYGQSL--------- 235 (377)
T ss_pred c--------------------hhh----hhHHHHHcCccHHH---HHHHHHHHhHHHHHHHHHHHHHHHHc---------
Confidence 0 000 01122333222111 11111112222211111111111100
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcc-hh-HHHHHHHHHHHHHhhhh
Q 014304 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS-NI-LTTGLLFGARMCVMGAF 341 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 341 (427)
+.+.........+..+...++.++.+++.||+|||+.+..+.....+....+....+ .. ..........++.....
T Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 313 (377)
T TIGR00890 236 --GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTI 313 (377)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccch
Confidence 011111122234456677888899999999999999887766555544433332221 11 11111122222222333
Q ss_pred HhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 014304 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTS 402 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~ 402 (427)
+....+.+|.+|++.|+++.|+.+....+|+.++|.+.+.+.+..+....+.+.+++.+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 4557789999999999999999999999999999999998877665444555555555444
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-21 Score=186.16 Aligned_cols=310 Identities=16% Similarity=0.127 Sum_probs=184.2
Q ss_pred hhccchhHHHH-HHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhH--HHHHHHHHHHh
Q 014304 26 WQNLVRMGFLG-EALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMW--MVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~l~~-~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~--~~~~~~~~~iG 101 (427)
||+||||.++. +..+..++.++.++++|++.+++.|++.|.+.+.. +....+..|+.|++.|+.. .+......++|
T Consensus 58 Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 137 (375)
T TIGR00899 58 DYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLA 137 (375)
T ss_pred hccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHH
Confidence 69999887655 55666677788899999999999999998776654 4455667799888887743 56777778889
Q ss_pred HhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHH-hhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccc
Q 014304 102 SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 180 (427)
Q Consensus 102 ~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~ 180 (427)
.++++.++..+....+||+.|++.+++.++..+. ++++||+|++...+ + ++
T Consensus 138 ~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------~~----------- 189 (375)
T TIGR00899 138 WVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA----L-------------TR----------- 189 (375)
T ss_pred HHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc----c-------------Cc-----------
Confidence 8888887777666789999999988876665443 45689987531000 0 00
Q ss_pred cCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 014304 181 TLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTT-ILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
. +.++.++++..+.. ......+...... ..+.|......
T Consensus 190 ---------~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----- 229 (375)
T TIGR00899 190 ---------L----------------------EVRGLLASRDTRLLFVACTLMWGCNILY----IINMPLLIIHE----- 229 (375)
T ss_pred ---------c----------------------hhhhhhcCcchHHHHHHHHHHHHHHHHH----HhhhHHHHHHH-----
Confidence 0 00001111111111 1111122211111 11112111000
Q ss_pred CCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhh
Q 014304 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG 339 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (427)
.+.+................++..+++++.||+|||+.+..+.....+.........+.+..........++...
T Consensus 230 -----~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 230 -----LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred -----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111111222334566778889999999999987766554443333222222222222222222222233
Q ss_pred hhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014304 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
..+....+..|..|++ |+++.|+.+...++|+.++|.+.+.+.+..+....+.+.+++.+++.+...++
T Consensus 305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 305 LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence 3455677889999986 45999999999999999999999988877665555666666666666655443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=194.65 Aligned_cols=330 Identities=13% Similarity=0.149 Sum_probs=198.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFS--PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 102 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a--~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~ 102 (427)
||+|||+.+..+.++++++.++..++ .++..+++.|+++|++.|.. +....++.|+.|+++|++++++...+..+|.
T Consensus 101 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 180 (465)
T TIGR00894 101 GKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGT 180 (465)
T ss_pred HHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999998887544 56889999999999999987 5667888999999999999999999999999
Q ss_pred hHHHHHHHHhcCC-CChhHHHHhhhHHHHHHHHHh-hcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccc
Q 014304 103 VSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFL-GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 180 (427)
Q Consensus 103 ~~~~~~~~~~~~~-~~WR~~~~~~~i~~~i~~~~~-~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~ 180 (427)
++++++...+... .+||..|++.++++++..+.+ .+.||+|+... +.+.+| ++.+++ ..+++
T Consensus 181 ~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~-~~~i~~---~~~~~----------- 244 (465)
T TIGR00894 181 FIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFE-KKYINS---SLQGQ----------- 244 (465)
T ss_pred HHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHH-HHHHHh---hcccc-----------
Confidence 9998887766666 499999999988877765544 45678886321 111111 111110 00000
Q ss_pred cCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 014304 181 TLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~ 260 (427)
+ . +.++ + ..++++++.+ ..+..+...+++...++....|.|......
T Consensus 245 ------~-------------~-~~~~-~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~------ 291 (465)
T TIGR00894 245 ------K-------------G-STRQ-S---LPIKAIPKSL---PVWAIWFAIFGHFWLYTILPTYLPTFISWV------ 291 (465)
T ss_pred ------c-------------C-CCCC-C---CCHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 0 0 0000 0 1233444332 233334444556666666666666543211
Q ss_pred CccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHH--------HHHHHH--HHHHHHHHHhhcch-hHHHHH
Q 014304 261 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI--------TIMFTL--SCLFLLPLVTYQSN-ILTTGL 329 (427)
Q Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~--------~~~~~~--~~~~~~~~~~~~~~-~~~~~~ 329 (427)
.+.+.........+..+...++.++++++.||.+||+.. ..+... .+.+.+.......+ ......
T Consensus 292 ----~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (465)
T TIGR00894 292 ----LRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIII 367 (465)
T ss_pred ----hCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 011111112223344666778888999999997654211 111111 11111111111111 222222
Q ss_pred HHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhc--c-hhHHHHHHHHHHHHHHHHH
Q 014304 330 LFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC--H-QMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~--~-~~~~~~~~~~~~~i~~~~~ 406 (427)
+.+...+..+.....+....|..|. .++++.|+.+..+.++++++|.+.+++.+.. + ....+.+.+++.+++.++.
T Consensus 368 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 368 LTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred HHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 2222222222333444556677765 8999999999999999999999998776542 2 2244556666666666555
Q ss_pred hhc
Q 014304 407 MLI 409 (427)
Q Consensus 407 ~~l 409 (427)
.++
T Consensus 447 ~~~ 449 (465)
T TIGR00894 447 LIF 449 (465)
T ss_pred eee
Confidence 543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=178.61 Aligned_cols=310 Identities=18% Similarity=0.175 Sum_probs=205.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
+|+-||+.++..+.++.++.++++++|||++++++|++.|++-|.. .....+..+.+|+++|++++++...+..+..++
T Consensus 73 ~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~ 152 (394)
T COG2814 73 GRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVL 152 (394)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999987 456677889999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHH-hhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
+..++.++...+|||..|.+.+..+++.++. +..+| |+- + +++ +
T Consensus 153 GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~-----~-~~~---------------~------------ 197 (394)
T COG2814 153 GVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSE-----I-SGS---------------L------------ 197 (394)
T ss_pred hccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc-----C-CCC---------------C------------
Confidence 9999998888999999999988888776544 56777 320 0 000 0
Q ss_pred CCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 014304 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
........++++++......+...++++-.+..|. +..|.+.+..
T Consensus 198 ------------------------~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ft--Yi~P~L~~v~--------- 242 (394)
T COG2814 198 ------------------------PGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYT--YIRPFLESVA--------- 242 (394)
T ss_pred ------------------------CcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHH--hHHHHHHHcc---------
Confidence 00001112334433333333333333332222221 1123332111
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHhhhhH
Q 014304 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQSNILTTGLLFGARMCVMGAFT 342 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 342 (427)
+.+....-...+..+++.+.|+.++|++.|| +.|+.+........+....+.. ..+.+.....++...+.......
T Consensus 243 --g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~ 319 (394)
T COG2814 243 --GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQ 319 (394)
T ss_pred --CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhh
Confidence 1112223344566788889999999999999 7777666654444333333333 22233222222222222121222
Q ss_pred hHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014304 343 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 343 ~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
......++ .-++.+..+.++.....++|..++..+.+.+.+..+.....++-+.+.+++.++....
T Consensus 320 ~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 320 GLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred HHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555 5578899999999999999999999999988888765555566566666666555443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-21 Score=187.22 Aligned_cols=311 Identities=14% Similarity=0.138 Sum_probs=194.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+.++..++.++.++++|+.+++++|++.|++.|.. +....++.|+.|+++|+...+..+..+.+|..+
T Consensus 67 dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 146 (394)
T PRK03699 67 EIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI 146 (394)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998875 455677889999999999998888888888877
Q ss_pred HHHHHHH-hcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCC
Q 014304 105 EAIGAWI-IMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~-~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.+... +....+||+.+.+.+++.++..+..++ .+.|+. + + + +++
T Consensus 147 ~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~---~-~--~------------~~~-------------- 193 (394)
T PRK03699 147 FPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL---G-K--H------------APK-------------- 193 (394)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc---c-c--c------------Ccc--------------
Confidence 7665443 344579999999888776655443322 222210 0 0 0 000
Q ss_pred CCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 014304 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
+ ++ + ..+ ....++.+.....++.....+++...|.|...... .
T Consensus 194 -~-~~-~-------------~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--------~ 236 (394)
T PRK03699 194 -A-DK-P-------------VAK-------------EKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK--------F 236 (394)
T ss_pred -c-cC-c-------------ccc-------------ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------c
Confidence 0 00 0 000 00112222333333444445566666666543211 0
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHh
Q 014304 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 343 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (427)
+....... .......+...+|.++.+.+.||++||+.+.....+..+....+....+........+...++..+.++.
T Consensus 237 g~s~~~~~--~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 314 (394)
T PRK03699 237 GMSLEDAG--NLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTT 314 (394)
T ss_pred CCChHHhh--HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 00011111 1122334566788899999999999999877655544443333322222222222222333333444555
Q ss_pred HHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014304 344 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 344 ~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
...+..|..|.+ +++..|.....+++|+.++|.+.+++.+..+....++..+.+.+++.+....+
T Consensus 315 ~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 315 IITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence 666777877754 67788999999999999999999998887665555666566655555444444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=192.51 Aligned_cols=340 Identities=16% Similarity=0.148 Sum_probs=197.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFS----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a----~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
||+|||+.+..+.++.+++.++.++. .++..+.+.|++.|++.|.. +....++.|+.|+++||+.+++.+....+
T Consensus 86 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~ 165 (438)
T TIGR00712 86 DRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNI 165 (438)
T ss_pred hccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHh
Confidence 69999999999999999998887664 46788899999999998876 44566778999999999999999999999
Q ss_pred hHhHHHHHHH-HhcCCCChhHHHHhhhHHHHHH-HHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccc
Q 014304 101 GSVSEAIGAW-IIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 101 G~~~~~~~~~-~~~~~~~WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
|..+++.+.. ......+||..|++.++++++. ++.++++||+|+... ..++. +.+ + +.+
T Consensus 166 g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~-----~~~--~--~~~------- 226 (438)
T TIGR00712 166 GGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG---LPPIE-----EYR--N--DYP------- 226 (438)
T ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC---CCCch-----hcc--c--ccc-------
Confidence 8887765543 3333468999999988877664 344567899886421 10000 000 0 000
Q ss_pred cccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
++..+++ + ++.+.++ ...+.+++.+. .+......+.....+|+...+.|......
T Consensus 227 -----~~~~~~~----------~-~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~l~~~---- 281 (438)
T TIGR00712 227 -----DDYNEKA----------E-QELTAKE--IFMQYVLPNKL---LWYIAIANVFVYLLRYGVLDWSPTYLKEV---- 281 (438)
T ss_pred -----ccccccc----------c-cccchHH--HHHHHHccCch---HHHHHHHHHHHHHHHHHHHHhHHHHHHHc----
Confidence 0000000 0 0000000 01112232221 11122222223344455555555443211
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhH-HHHHHHHH--HHHHHHHHHhh-c-chhHHHHHHHHH
Q 014304 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL-SITIMFTL--SCLFLLPLVTY-Q-SNILTTGLLFGA 333 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~-~~~~~~~~--~~~~~~~~~~~-~-~~~~~~~~~~~~ 333 (427)
.+.+.........+..+..+++.++++++.||++||+ ........ ..+........ . +.+......+..
T Consensus 282 ------~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (438)
T TIGR00712 282 ------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVI 355 (438)
T ss_pred ------cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 0111111122234455677888899999999996432 22221111 11111111111 1 112111111112
Q ss_pred HHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhH-hHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccc
Q 014304 334 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGG-MVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 334 ~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
.+...+..........|.+|++.|+++.|+.+..+++++ .++|.+.+.+.+..+....+.++.++.+++.+..+++.||
T Consensus 356 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (438)
T TIGR00712 356 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 435 (438)
T ss_pred HHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 121122222234567899999999999999999999875 5789999988887665556666676677777777777788
Q ss_pred CCC
Q 014304 413 TKG 415 (427)
Q Consensus 413 tk~ 415 (427)
.|.
T Consensus 436 ~~~ 438 (438)
T TIGR00712 436 EKR 438 (438)
T ss_pred ccC
Confidence 763
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=180.26 Aligned_cols=290 Identities=27% Similarity=0.317 Sum_probs=206.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+..+..++.+...+++|+..++++|++.|++.+.. +....+..|+.|+++|++..++.+....+|..+
T Consensus 59 d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 138 (352)
T cd06174 59 DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALL 138 (352)
T ss_pred HHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999876 556778899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.++..+....+||+.+.+.+++.++..+...++| | +
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------------~----------------------- 176 (352)
T cd06174 139 GPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL--R-----------------L----------------------- 176 (352)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--H-----------------H-----------------------
Confidence 998887776667899999988877766555443333 0 0
Q ss_pred CCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccC
Q 014304 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS 264 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 264 (427)
........+.....+.....+.+......
T Consensus 177 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 205 (352)
T cd06174 177 -----------------------------------------LLLLALAFFLLSFGYYGLLTYLPLYLQEV---------- 205 (352)
T ss_pred -----------------------------------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHh----------
Confidence 00011111222222222222222222110
Q ss_pred CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhH-HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHh
Q 014304 265 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL-SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 343 (427)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (427)
.+.+............+...++..+.+.+.||+|||+ .+..+.....+.........+.+..........++.....+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 285 (352)
T cd06174 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPA 285 (352)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchh
Confidence 0011122223344556777888899999999999999 777766665555444433333222223333333444555678
Q ss_pred HHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Q 014304 344 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVML 408 (427)
Q Consensus 344 ~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 408 (427)
...+..|..|++.|++..|+.+...++++.++|.+.+.+.+..+....+.+.+++.+++.+..++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 89999999999999999999999999999999999998887666556677777777777665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=181.39 Aligned_cols=295 Identities=14% Similarity=0.055 Sum_probs=188.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSP-----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~-----~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
||+|||+.++.+.++..++.++..+++ |+++++++|++.|++.|.. +...+++.|+.|+++|++..++.+....
T Consensus 59 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (365)
T TIGR00900 59 DRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRS 138 (365)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHH
Confidence 699999999999999999998888887 9999999999999998876 5567888999999999999999999999
Q ss_pred HhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhh--cccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccccc
Q 014304 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG--FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVA 177 (427)
Q Consensus 100 iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~--~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~ 177 (427)
+|.++++.++..+....+||+.+.+.++..++..+..+ ..||.++- ++.+..++..
T Consensus 139 ~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------------------ 196 (365)
T TIGR00900 139 LFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS----EIQALSNAVL------------------ 196 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc----cccccchhHH------------------
Confidence 99999988877776678999999888776655443332 23333210 0000000000
Q ss_pred ccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhccccC
Q 014304 178 RRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVV-LLISELSSLDTR 256 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~l~~~~~~ 256 (427)
++....++.+++++..+.......+ ....+++.. .+.|......
T Consensus 197 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-- 241 (365)
T TIGR00900 197 ------------------------------RDTREGIKFVLKNPLLRTLLLLALL---FNLVFAPAIVALFPYVQSKY-- 241 (365)
T ss_pred ------------------------------HHHHhHHHHHHcCcHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHH--
Confidence 0000123344443333322222221 111222221 2222221100
Q ss_pred CCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHH
Q 014304 257 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS-NILTTGLLFGARM 335 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 335 (427)
.+.+............+..+++.++.+++.||.|||+.+..+....++....+....+ .+......+...+
T Consensus 242 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (365)
T TIGR00900 242 --------LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGV 313 (365)
T ss_pred --------hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Confidence 0011111122233445667778888999999999999887765555444443333222 2222222222333
Q ss_pred HHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 336 CVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 336 ~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
+..........+..|..|++.|+++.|+.+...++++.++|.+.+++.+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 314 GYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456788999999999999999999999999999999998877764
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-20 Score=181.70 Aligned_cols=304 Identities=17% Similarity=0.081 Sum_probs=184.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHh---h-----cchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLS---S-----FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~---~-----~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+.++.+.+...++++.. + ..+|+..++++|+++|++.+.. +....+..|+.|+++|++++++.+.
T Consensus 76 Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~ 155 (392)
T PRK12382 76 DQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGM 155 (392)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHH
Confidence 59999999999888777665432 2 2368899999999999998875 4556678899999999999999999
Q ss_pred HHHHhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccc
Q 014304 97 FWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLV 176 (427)
Q Consensus 97 ~~~iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~ 176 (427)
....|..+++.++..+....+||..+.+..+..++........||+|.- + + ++
T Consensus 156 ~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~-------------~~------- 208 (392)
T PRK12382 156 AMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPAH---A----G-------------ER------- 208 (392)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCCC---c----c-------------cC-------
Confidence 9999999988887776677899998776655444333322233332210 0 0 00
Q ss_pred cccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 014304 177 ARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTR 256 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~ 256 (427)
++. ....+.++ +..+.... ....+.....+.+......
T Consensus 209 -------------~~~------------------~~~~~~~~-----~~~~~~~l----~~~~~~~~~~~~~~~~~~~-- 246 (392)
T PRK12382 209 -------------PSL------------------WSVVGLIW-----KPGLGLAL----QGVGFAVIGTFVSLYFASK-- 246 (392)
T ss_pred -------------chH------------------HHHHHHHH-----HhHHHHHH----HHHHHhHHHHHHHHHHHhc--
Confidence 000 00001111 11111111 1112222222222111100
Q ss_pred CCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 014304 257 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 336 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (427)
+.... ........+..+++..+.+.+.||+|||+.+..+.....+....+....+.+.......+..++
T Consensus 247 ---------~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 315 (392)
T PRK12382 247 ---------GWAMA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAG 315 (392)
T ss_pred ---------CCchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 00111 1122234455667788899999999999887766555444433333322222211212222222
Q ss_pred HhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014304 337 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 337 ~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
.....+.......|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+....+.+.+.+.+++.+..++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 316 CSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 2223344566778999999999999999999999999999999988887665566667777666666655543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-21 Score=181.29 Aligned_cols=325 Identities=21% Similarity=0.243 Sum_probs=216.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||.+.|.-+-..+++.++..++.+++++...+.++-++.|+.-|.. |.....+..|.|+++||+..++.+.+.++|..+
T Consensus 89 Dr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal 168 (448)
T COG2271 89 DRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL 168 (448)
T ss_pred ccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch
Confidence 5888899999999999999999999999999999999999998865 666677889999999999999999999999988
Q ss_pred HHHHH--HHhcCCCChhHHHHhhhHHHHHHH-HHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccccccccc
Q 014304 105 EAIGA--WIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 181 (427)
Q Consensus 105 ~~~~~--~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~ 181 (427)
.+++. ..+..+.+||..|++.++.+++.. +.++.+.++|+=. |-.. +++.+++ + .
T Consensus 169 ~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---GLP~-----ie~~~~d---~-----------~ 226 (448)
T COG2271 169 APLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---GLPP-----IEEYRGD---P-----------L 226 (448)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---CCCC-----HHHhhcC---c-----------h
Confidence 87776 555666799999999999887764 4456778888621 1110 1111000 0 0
Q ss_pred CCCCCCCCccchhccccCCCCCccCCCchhhHHHHh----cCcchhhHHHHHHHHHHHHHHHH---HHHHHHHHHhhccc
Q 014304 182 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLML----FSSKLARTTILLWLLLFGNSFAY---YAVVLLISELSSLD 254 (427)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~---y~~~~~~~~l~~~~ 254 (427)
|.+ ++ ++.++.++.+..+ ++.|. +|.+...+.+.| |++.-|.|....-.
T Consensus 227 e~~------------~~------~~~~~~ls~~~i~~~YVL~Nk~------iW~la~a~vfvYivR~gi~dW~p~YL~e~ 282 (448)
T COG2271 227 EIY------------EE------EKENEGLTAWQIFVKYVLKNKL------IWLLALANVFVYVVRYGINDWGPLYLSEV 282 (448)
T ss_pred hhh------------hh------hccCCCccHHHHHHHHHHcChH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 000 00 0000001122222 23322 444444555544 78888877543211
Q ss_pred cCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh--ChhHHHHHHHHHHH-HHHHHHHhhcc--hhHHHHH
Q 014304 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA--GRKLSITIMFTLSC-LFLLPLVTYQS--NILTTGL 329 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~--GRR~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~ 329 (427)
. +.+..+......+.-.++++|.+++|+++||. |||....+.+++.. +++.......+ .....++
T Consensus 283 --------k--~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~ 352 (448)
T COG2271 283 --------K--GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAIL 352 (448)
T ss_pred --------c--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Confidence 1 11222222334455678899999999999995 89987755444333 33333322222 2444555
Q ss_pred HHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhH-hHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 014304 330 LFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 406 (427)
+++..+++.++--+.-..+.|+-|.+.-|++.|+...++.+ |+..+....+++.+.++=...++++.+.++++.++.
T Consensus 353 l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 353 LFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred HHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence 66666777777778889999999999999999999999998 888888777777666432344555555555554444
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-20 Score=180.55 Aligned_cols=312 Identities=19% Similarity=0.211 Sum_probs=185.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+.++.++..++.++.++++++++++++|++.|++.|.. +....++.|+.|+++|++..++.+....+|..+
T Consensus 55 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 134 (379)
T TIGR00881 55 DRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGL 134 (379)
T ss_pred HhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHH
Confidence 6999999999999999999999999999999999999999999876 566778899999999999999999999999998
Q ss_pred HH-HHHHHhcCCCChhHHHHhhhHHHHHH-HHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccC
Q 014304 105 EA-IGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 182 (427)
Q Consensus 105 ~~-~~~~~~~~~~~WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (427)
++ ++...+....+||+.+.+.++..++. ++..++.||+|+.. ++.++ ++.++ .+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------~~~~~--------~~ 190 (379)
T TIGR00881 135 LPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC---GLPPA-------------EEMPN--------EE 190 (379)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcccc---ccCcc-------------ccCcc--------cc
Confidence 88 45555556689999998887766554 44455678877521 10000 00000 00
Q ss_pred CCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 014304 183 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
.++.+ + + ++++.+......+.+++.+.. +......+......++...+.+......
T Consensus 191 ~~~~~---~---------~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 246 (379)
T TIGR00881 191 PDGDA---E---------K-KEEELTKKQIFLQYVLLNKVL---WYISLGYVFVYVVRTGILDWSPLYLTQE-------- 246 (379)
T ss_pred ccccc---c---------c-ccccccchHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 00000 0 0 000000000122333332221 1122222222223333333333322100
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhC-hhHH-HHHHHHHHH-HHHHHHHhh-cch-hHHHHHHHHHHHHH
Q 014304 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG-RKLS-ITIMFTLSC-LFLLPLVTY-QSN-ILTTGLLFGARMCV 337 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~G-RR~~-~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~~~~~~~ 337 (427)
.+.+............+..+++.++.+++.||.+ ||+. ......... ......... ..+ .......+...++.
T Consensus 247 --~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 324 (379)
T TIGR00881 247 --KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLV 324 (379)
T ss_pred --hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH
Confidence 0011111122234456677888999999999863 3332 222211111 111111111 111 11112222222333
Q ss_pred hhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc
Q 014304 338 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 338 ~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~ 387 (427)
.+.....+.+..|.+|++.|+++.|+.+.++.+++.++|.+.+.+.+..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 325 YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred hhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 34445567889999999999999999999999999999999998887654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-19 Score=179.07 Aligned_cols=320 Identities=17% Similarity=0.125 Sum_probs=196.3
Q ss_pred chhhhc-----cchhH-HHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHH
Q 014304 23 PHLWQN-----LVRMG-FLGEALVTAGAGLLSSFS---PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMV 92 (427)
Q Consensus 23 ~~~~~~-----GRk~~-l~~~~~~~~i~~~~~~~a---~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~ 92 (427)
|..||+ |||+. +..+.+..+++....++. .++..+.+.|++.|++.+.. +...++..|+.|+++||+..+
T Consensus 67 pl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~ 146 (491)
T PRK11010 67 PLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAA 146 (491)
T ss_pred HHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHH
Confidence 444788 99986 556777777777666665 46888999999999987754 556788899999999999999
Q ss_pred HHHHHHHHhHhHHHHHHHHhcC-CCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCC
Q 014304 93 IFSSFWTIGSVSEAIGAWIIMP-RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLP 171 (427)
Q Consensus 93 ~~~~~~~iG~~~~~~~~~~~~~-~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~ 171 (427)
+...++.+|.++++.+...+.. ..|||..|++.++..++..+..+++||+|+.. .+.++.+
T Consensus 147 i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~~--------------- 208 (491)
T PRK11010 147 ISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKTLE--------------- 208 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccchh---------------
Confidence 9999999999998877766666 46999999998887776666555678876410 0000000
Q ss_pred CcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHH-HHHh
Q 014304 172 NGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL-ISEL 250 (427)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~l 250 (427)
+ .....++++++++......+.... .....+....+ .+.+
T Consensus 209 ---------------------------------~---~~~~~l~~~~~~~~~~~~ll~~~l---~~~~~~~~~~~~~~~l 249 (491)
T PRK11010 209 ---------------------------------Q---AVVAPLRDFFGRNNAWLILLLIVL---YKLGDAFAMSLTTTFL 249 (491)
T ss_pred ---------------------------------h---hHHHHHHHHHcCcCHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 0 000123344443322222222211 11222111112 2222
Q ss_pred hccccCCCCCCccCCCCCChhHHHH-HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH---HHhhcchhHH
Q 014304 251 SSLDTRCRSPLMFSHHPQDANLYID-EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP---LVTYQSNILT 326 (427)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~---~~~~~~~~~~ 326 (427)
... .+.+....... .....++.++|.+++++++||+|||+.+..+.+...+.... +....++...
T Consensus 250 ~~~-----------~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~ 318 (491)
T PRK11010 250 IRG-----------VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYS 318 (491)
T ss_pred HHh-----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 110 01111111111 12334567888999999999999988766544333222211 1121222211
Q ss_pred HH-HHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 014304 327 TG-LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILS 405 (427)
Q Consensus 327 ~~-~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 405 (427)
.. ..+...++.....+..+.+..++.|.+.+++..|+.+....+++.+++.+.+++.+..+....+.+.+++.+.+.+.
T Consensus 319 l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~ 398 (491)
T PRK11010 319 MGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLL 398 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 11 12221222222335568888899999999999999999999998888888888888766545566666777777666
Q ss_pred Hhhcc
Q 014304 406 VMLIP 410 (427)
Q Consensus 406 ~~~l~ 410 (427)
.+.++
T Consensus 399 ~~~~~ 403 (491)
T PRK11010 399 LLVCR 403 (491)
T ss_pred HHHHH
Confidence 66654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=183.07 Aligned_cols=323 Identities=15% Similarity=0.130 Sum_probs=193.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.++++.++..+++++.++++|+.+++++|+++|++.|.. +....++.|+.|+++|++..++......+|..+
T Consensus 62 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 141 (485)
T TIGR00711 62 KRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPAL 141 (485)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhh
Confidence 5999999999999999999999999999999999999999998876 566788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHH-HhhcccCcchhHhhcCchHHHHHHHHH-------HHhhcCCCCCCcccc
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEK-------IAQVNKTKLPNGKLV 176 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~-~~~~lpESP~~L~~k~r~~ea~~~l~~-------~~~~~~~~~~~~~~~ 176 (427)
++.++..+....+||+.|++.+.++++... ..+.+||+++ ..+++.|.....+.. .....+++.+
T Consensus 142 g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~----- 214 (485)
T TIGR00711 142 GPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEGPERG----- 214 (485)
T ss_pred hhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCC-----
Confidence 988887777788999999988777665443 3456777654 112222221111100 0000000000
Q ss_pred cccccCCCCCCCCccchh------------ccccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHH
Q 014304 177 ARRSTLPTGERAPPELVH------------LLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAV 243 (427)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~y~~ 243 (427)
..++.+... ...+. . + ++..... ++++ ++.... ....+...+.+++.
T Consensus 215 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~----~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~ 274 (485)
T TIGR00711 215 ---------WFDSNEILILSITGLVAIIAFVVWEL-T-D----DNPLVDL-RLFKYRNFTIG----CVYMSLLGLGLYGS 274 (485)
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHHHH-c-C----CCCccCH-HHHcCCChHHH----HHHHHHHHHHHHHH
Confidence 000000000 00000 0 0 0001111 2333 222222 11222233334444
Q ss_pred HHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-h--
Q 014304 244 VLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-Y-- 320 (427)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~-~-- 320 (427)
..+.|...... .+.+............+..+++..+++++.||+|||+.+..+....++....+.. .
T Consensus 275 ~~~~p~~~~~~----------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 344 (485)
T TIGR00711 275 FYLLPLYLQQV----------LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP 344 (485)
T ss_pred HHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence 44444332110 0111111222334455667788899999999999999887766555444443331 1
Q ss_pred cchhHH-HHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 321 QSNILT-TGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 321 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
..+... .....+..++....+........|..|++.|+++.|+.+....+|+.+++.+.+.+.+.
T Consensus 345 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 345 DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112111 11122222222223334455667889999999999999999999999999888777653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-19 Score=173.41 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=102.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.++.+.++..++.++.++++|++++++.|+++|++.|.. +....++.|+.|+++|++..++.....++|.++
T Consensus 80 Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~i 159 (394)
T PRK10213 80 QATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVI 159 (394)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999876 556677889999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHH-hhcccCcc
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESP 143 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP 143 (427)
++.++..+....+||+.|.+.++.+++..+. +..+||+|
T Consensus 160 g~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 160 AAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 9988888777789999999887766554333 33467754
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.2e-19 Score=176.60 Aligned_cols=334 Identities=14% Similarity=0.062 Sum_probs=185.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.++.+..+.+++.+..++++++.+++++|+++|++.|.. +....++.|+.|+++|+...++......+|..+
T Consensus 70 d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 149 (471)
T PRK10504 70 DRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLL 149 (471)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999886 556677889999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHH-HHhhcccCcchhHhhcCchHHHHHHHHHHH------hhcCCCCCCccccc
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIA------QVNKTKLPNGKLVA 177 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP~~L~~k~r~~ea~~~l~~~~------~~~~~~~~~~~~~~ 177 (427)
++.++..+....+||+.|.+......+.. ......||++. .+.|.+.+.....-.. ..++.+........
T Consensus 150 g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (471)
T PRK10504 150 GPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLA 226 (471)
T ss_pred hhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHH
Confidence 88887777777899999988765554433 33345565442 2223232211111000 00000000000000
Q ss_pred ccccCCCCCCCCccc-hhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc
Q 014304 178 RRSTLPTGERAPPEL-VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL-WLLLFGNSFAYYAVVLLISELSSLDT 255 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~l~~~~~ 255 (427)
.. ..-... -... ....++. + .++ ...+. .+++++..+..+.. ....++....+ .+.|...+..
T Consensus 227 ~~--~~~~~~-~~~~~~~~~~~~-~--~~~---~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~- 291 (471)
T PRK10504 227 IA--GLVAVG-VVALLLYLLHAR-N--NNR---ALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLP----FMTPVFLQIG- 291 (471)
T ss_pred HH--HHHHHH-HHHHHHHHHHHh-c--CCC---CccCH-HHhcccchHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-
Confidence 00 000000 0000 0000000 0 000 00112 23433332222222 21122222111 1222221100
Q ss_pred CCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh-cchhHH--HHHHHH
Q 014304 256 RCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-QSNILT--TGLLFG 332 (427)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~ 332 (427)
.+.+............+...++..+.+.+.||+|||+.+..+.....+....+... ...+.. ......
T Consensus 292 ---------~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (471)
T PRK10504 292 ---------LGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFL 362 (471)
T ss_pred ---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 00111111122223334445555778999999999998877665444443333321 112111 111122
Q ss_pred HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhc
Q 014304 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC 386 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~ 386 (427)
...+....++.......+..|.+.|+++.|+.+....+|+.++|.+.+.+++..
T Consensus 363 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 363 QGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222334566788889999999999999999999999999998888776654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-19 Score=172.55 Aligned_cols=307 Identities=11% Similarity=0.067 Sum_probs=181.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+++..+.++..++.++.++++|++++++.|++.|++.|.. +....+..|+.|+++|++..++...+..+|..+
T Consensus 63 dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 142 (382)
T PRK10091 63 SRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLL 142 (382)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999876 444566789999999999999999999999988
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHH-HhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~-~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.++..+....+||+.|.+.++..++..+ .++++||.++ +.+. +.+
T Consensus 143 g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~-~~~--------------------------- 190 (382)
T PRK10091 143 GIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKG-GLR--------------------------- 190 (382)
T ss_pred hccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----cccc-CHH---------------------------
Confidence 887776666678999999988876655433 3456787642 0000 000
Q ss_pred CCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccCCCCCCc
Q 014304 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVL-LISELSSLDTRCRSPLM 262 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~l~~~~~~~~~~~~ 262 (427)
..++.+.+++.+ ......+......+.... ..+.+....
T Consensus 191 ----------------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 230 (382)
T PRK10091 191 ----------------------------EQFHFLRSPAPW----LIFAATMFGNAGVFAWFSYIKPYMMFIS-------- 230 (382)
T ss_pred ----------------------------HHHHHhcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 001111111111 111111111111111111 112221100
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHhhhh
Q 014304 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
+.+............+..+++.++.+++.||+|||+.+..+..+..+....+.. ....+......+.......+..
T Consensus 231 ---g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 307 (382)
T PRK10091 231 ---GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALS 307 (382)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 111111122234456677888899999999999999887665544433322222 2222222222222222112222
Q ss_pred H-hHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhc
Q 014304 342 T-VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 342 ~-~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
. .......+.+|.+.++.+ ..+....+|+.++|.+.+.+.+.. +....+.+.++++++...+...+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 308 APLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 2 222344555666666554 446677899999999999888753 33344444444444444444333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-19 Score=173.30 Aligned_cols=314 Identities=11% Similarity=0.110 Sum_probs=176.5
Q ss_pred hhhccchhHHH-HHHHHHHHHHHHhhcchhHHHHHHHHH-HhhhccccchhhhhhhhhccCCCcc--hhHHHHHHHHHHH
Q 014304 25 LWQNLVRMGFL-GEALVTAGAGLLSSFSPNYITLITLRC-LVGVGLGSGHVFLSWFLEFVPPSNR--GMWMVIFSSFWTI 100 (427)
Q Consensus 25 ~~~~GRk~~l~-~~~~~~~i~~~~~~~a~~~~~l~v~R~-l~G~g~G~~~~~~~~~~E~~p~~~R--g~~~~~~~~~~~i 100 (427)
.||+|||+.++ .+.+..+++..+.++++++.++++.+. +.|.+....+....+..|+.|++.| +.++++.+...++
T Consensus 75 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (393)
T PRK15011 75 SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSL 154 (393)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 47999998754 556666677778889999998766554 4455443335555666788777766 4556788888899
Q ss_pred hHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHH-HHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccccccc
Q 014304 101 GSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179 (427)
Q Consensus 101 G~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~ 179 (427)
|.+++++++..+....|||..|++.++..++.. ..+.++||+|+- + + ++. ++
T Consensus 155 g~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~------------~~---------- 207 (393)
T PRK15011 155 AWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---L-P-LAT------------GT---------- 207 (393)
T ss_pred HHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---C-c-ccc------------cc----------
Confidence 999998888777667899999998887666544 334567887630 0 0 000 00
Q ss_pred ccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 014304 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
.+. .++. .++...........+ ..++....+.|......
T Consensus 208 ---~~~------------------~~~~-----------~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~----- 246 (393)
T PRK15011 208 ---LEA------------------PRRN-----------RRDTLLLFVICTLMW----GTNSLYIINMPLFIINE----- 246 (393)
T ss_pred ---ccc------------------cccc-----------cccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-----
Confidence 000 0000 000011111111111 11222222233221100
Q ss_pred CCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhh
Q 014304 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG 339 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (427)
.+.+...............+++.++.++++||+|||+.+..+...............+.+.......+..++...
T Consensus 247 -----~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 247 -----LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI 321 (393)
T ss_pred -----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 001111111112223345567788999999999999877655444333322222222222222221222122122
Q ss_pred hhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
..+....+..|++|++ |+++.++.+...++|+.++|.+.+.+.+..+....+.+.+++.+++.+..++. |||
T Consensus 322 ~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~ 393 (393)
T PRK15011 322 LGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI-KDV 393 (393)
T ss_pred HHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence 2234456778999976 99999999999999999999999988776554444555555555665555544 454
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-19 Score=175.38 Aligned_cols=315 Identities=14% Similarity=0.090 Sum_probs=191.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHHHHHhHhHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~ 105 (427)
||+|||+.+..+.+...++.++..+++|++++++.|++.|++.+..+....++.|..|+++|++..++......+|..++
T Consensus 79 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (408)
T PRK09874 79 DRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLG 158 (408)
T ss_pred hhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999998999999999999999999855445555677899999999999999999999999888
Q ss_pred HHHHHHhcCCCChhHHHHhhhHHHHHHHHH-hhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCCC
Q 014304 106 AIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 106 ~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
+.+...+....+||..+.+.++..++..+. .+++||.++-. + +.++ ...+
T Consensus 159 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~--~~~~------------------------ 209 (408)
T PRK09874 159 PLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV--S-KKEM--LHMR------------------------ 209 (408)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc--c-chhh--hHHH------------------------
Confidence 888776666689999998887766554433 34556654210 0 0000 0000
Q ss_pred CCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCcc
Q 014304 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS-ELSSLDTRCRSPLMF 263 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~-~l~~~~~~~~~~~~~ 263 (427)
..+..+.+++..+........ ..........+.+ ...+...
T Consensus 210 ---------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------- 251 (408)
T PRK09874 210 ---------------------------EVVTSLKNPKLVLSLFVTTLI---IQVATGSIAPILTLYVRELAG-------- 251 (408)
T ss_pred ---------------------------HHHHhCcCCchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc--------
Confidence 000011112221111111111 0111111111111 1110000
Q ss_pred CCCCCChhH--HHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhh
Q 014304 264 SHHPQDANL--YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 264 ~~~~~~~~~--~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
....... .....+..+...++..+.+++.||+|||+.+..+.....+..+......+.+..........++.....
T Consensus 252 --~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 329 (408)
T PRK09874 252 --NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALL 329 (408)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhH
Confidence 0000000 111122234455666678899999999998877666554444333332222222222222222222233
Q ss_pred HhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014304 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
+....+..+..|.+.|++..++.+....+|..++|.+.+.+.+..+....+.+.+++.+++.+..++.
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 330 PAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 44455667888999999999999999999999999999988777665566777777777766665543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-18 Score=169.08 Aligned_cols=286 Identities=16% Similarity=0.118 Sum_probs=174.5
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHh
Q 014304 25 LWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 25 ~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~ 103 (427)
.||+|||+.+..+.++..++.+...++++++.++++|++.|++.+.. +....++.|+.|+++|++..++.+....+|..
T Consensus 64 ~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 143 (385)
T TIGR00710 64 SDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPA 143 (385)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999876 55677889999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHhhhHHHHHHHH-HhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccC
Q 014304 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 182 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~-~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (427)
+++.++..+....+||..+.+.++..++... .++..||+++.. +.++.+
T Consensus 144 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------------------- 193 (385)
T TIGR00710 144 VAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE----ARIQIS-------------------------- 193 (385)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc----ccCCHH--------------------------
Confidence 8888877766678999999887776655433 344567765310 000000
Q ss_pred CCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 014304 183 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
.....++++++.+......+. .......++....+.|......
T Consensus 194 --------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------- 236 (385)
T TIGR00710 194 --------------------------TYFETFLLLLKSKMFWGYALI---YGASFGGFFAFFSGAPFVYIDI-------- 236 (385)
T ss_pred --------------------------HHHHHHHHHHcCchhHHHHHH---HHHHHHHHHHHHHcChHHHHHH--------
Confidence 000112222322221111111 1111122222222222211100
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh---hc-chhHHHHH-HHHHHHHH
Q 014304 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQ-SNILTTGL-LFGARMCV 337 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~-~~~~~~~~ 337 (427)
.+.+............+..+++.++.+++.||+|||+.+..+.....+....+.. .. +....... .....++.
T Consensus 237 --~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (385)
T TIGR00710 237 --MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGN 314 (385)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 0111111112233445667788899999999999998876654443333222221 11 11111111 11222223
Q ss_pred hhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHH
Q 014304 338 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 380 (427)
Q Consensus 338 ~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~ 380 (427)
.........+..|.+| +.|+++.++.+.....++.+.+.+.+
T Consensus 315 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 315 SMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566788889998 56999999999888765444444445
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-18 Score=170.36 Aligned_cols=118 Identities=18% Similarity=0.164 Sum_probs=100.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.++.+.++..++.+...+++|+..++++|+++|++.+.. .....++.|+.|+++|++..++.+....+|..+
T Consensus 63 Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~ 142 (392)
T PRK10473 63 DRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVL 142 (392)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998875 456678889999999999999999999999888
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHH-HhhcccCcc
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESP 143 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~-~~~~lpESP 143 (427)
++.++..+....+||+.+.+.++.+++... ..+++||++
T Consensus 143 ~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 143 APVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 888777666668999999888776655433 345667764
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=177.89 Aligned_cols=289 Identities=24% Similarity=0.298 Sum_probs=180.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+.++..++.+...+++|++.++++|++.|++.+.. +....++.|+.|+++|++..++.+....+|.++
T Consensus 57 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 136 (352)
T PF07690_consen 57 DRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSIL 136 (352)
T ss_dssp HHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhc
Confidence 6999999999999999999777777788889999999999998776 566788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHH-hhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.++..+....+||+.+++.++..++..+. ..+++|.|+.-..+.+.++.
T Consensus 137 g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------------------------- 188 (352)
T PF07690_consen 137 GPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE---------------------------- 188 (352)
T ss_dssp HHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT----------------------------
T ss_pred ccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc----------------------------
Confidence 9988887776789999999988887776543 34555555321000000000
Q ss_pred CCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccCCCCCCc
Q 014304 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL-SSLDTRCRSPLM 262 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l-~~~~~~~~~~~~ 262 (427)
+ + ++++.. ..++.+++++... ......+...+.++....+.|.. ....
T Consensus 189 ---~---~-----------~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------- 237 (352)
T PF07690_consen 189 ---S---K-----------KPKPLK---PGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEVL-------- 237 (352)
T ss_dssp -------------------HHHCCC---H-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHHH--------
T ss_pred ---c---c-----------cccccc---cccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhcc--------
Confidence 0 0 000000 0122233222211 12222222333344444444432 1110
Q ss_pred cCCCCC-ChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHHHh
Q 014304 263 FSHHPQ-DANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQSNILTTGLLFGARMCVM 338 (427)
Q Consensus 263 ~~~~~~-~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 338 (427)
+.+ .........+..+...++.++.+.+.||+|+|+..........+....+.. ..+........++..++..
T Consensus 238 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 314 (352)
T PF07690_consen 238 ---GFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFG 314 (352)
T ss_dssp ---HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 011 111122234445666667888999999999877665544433333322221 1122222233333333444
Q ss_pred hhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHH
Q 014304 339 GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 376 (427)
Q Consensus 339 ~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p 376 (427)
...+....+..|..|++.|+++.|+.+....+++.++|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 315 IVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-19 Score=172.54 Aligned_cols=306 Identities=13% Similarity=0.084 Sum_probs=189.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFS-----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a-----~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
||+|.|+++.++.+++++.++..+++ +|+.++++.|++.|++ |+. ++....+.++.|+++||++.++.....+
T Consensus 95 Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~ 173 (462)
T PRK15034 95 PIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGN 173 (462)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHh
Confidence 69999999999999999999999987 8999999999999998 555 4566778999999999999999976666
Q ss_pred HhHhHHHHHHHHh-----c-------------CCCChhHHHHhhhHHHHHHHHH-hhcccCcchhHhhcCchHHHHHHHH
Q 014304 100 IGSVSEAIGAWII-----M-------------PRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALE 160 (427)
Q Consensus 100 iG~~~~~~~~~~~-----~-------------~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~k~r~~ea~~~l~ 160 (427)
+|..+..++...+ . ...+||....+-+++.++..+. ++++++-|. .|.+.
T Consensus 174 ~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~-------- 242 (462)
T PRK15034 174 LGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASI-------- 242 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCH--------
Confidence 7765544433221 1 1234888776665555444333 333433221 00000
Q ss_pred HHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHH
Q 014304 161 KIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAY 240 (427)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (427)
......++. ++++.+..++++..-.|
T Consensus 243 ---------------------------------------------------~~~~~vlk~---~~~Wllslly~~tFG~f 268 (462)
T PRK15034 243 ---------------------------------------------------ADQLPVLQR---LHLWLLSLLYLATFGSF 268 (462)
T ss_pred ---------------------------------------------------HHHHHHhCC---CchhHHHHHHHHHHHHH
Confidence 011111221 12344555555555555
Q ss_pred HHHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH--
Q 014304 241 YAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV-- 318 (427)
Q Consensus 241 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~-- 318 (427)
.++..+.|.+.... .+........++..+...++..++|+++||+|||+.+.+++....++.....
T Consensus 269 vg~s~~lp~~~~~~------------~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~ 336 (462)
T PRK15034 269 IGFSAGFAMLAKTQ------------FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLT 336 (462)
T ss_pred HHHHHHHHHHHHHH------------cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 55555555543211 0111222223444555666677899999999999988877665544433222
Q ss_pred hhcc---h-hHHHHHHHHHHHHHhhhhHhHHhhccccCcc---------------------chhhHHHHHHHHHhhHhHh
Q 014304 319 TYQS---N-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPT---------------------SVRSTGAGAANAMGRIGGM 373 (427)
Q Consensus 319 ~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt---------------------~~R~~~~g~~~~~~~~~~~ 373 (427)
.+.+ + +......+...++...+.+..+..++.+||+ +.-+...|+....|.+|++
T Consensus 337 lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf 416 (462)
T PRK15034 337 LPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGF 416 (462)
T ss_pred hccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccc
Confidence 2211 1 1111212222223333456788899999985 1456778999999999999
Q ss_pred HHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhhc
Q 014304 374 VCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 374 ~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~l 409 (427)
+-|..++...+..+ ....+..+.+..+++.++.+..
T Consensus 417 ~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 417 FIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887766544 3445666666666666655444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-18 Score=169.39 Aligned_cols=315 Identities=12% Similarity=0.036 Sum_probs=181.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHhh---c-chhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSS---F-SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~---~-a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
||+|||+.+..+..+++++.++.. + .+|+..+++.|++.|+|.+.. +....+..|+.|+++||+++++.+....+
T Consensus 73 dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 152 (402)
T TIGR00897 73 EIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSI 152 (402)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 699999999999999988876542 3 368889999999999998765 44566778999999999999999999999
Q ss_pred hH-hHHHHHHHHhcCCCChhHHHHhhhHHHHHH-HHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccc
Q 014304 101 GS-VSEAIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 101 G~-~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
|. ++++.++..+.+..||+..++......++. .+..+..+|.|+ .++. ++
T Consensus 153 g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------------~~--------- 204 (402)
T TIGR00897 153 GIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT-------PQHM------------QT--------- 204 (402)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC-------cccc------------cC---------
Confidence 96 566766655555667554433222111111 112222332210 0000 00
Q ss_pred cccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
+ ++ .++....++.+++.+. .+......+.+...+++...+.|......
T Consensus 205 ------~----~~---------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---- 252 (402)
T TIGR00897 205 ------R----EK---------------FSELGKAATILFTNPN---VLLGGMVRIINTIGLFGFAVFLPMFVAEL---- 252 (402)
T ss_pred ------C----cc---------------hhhHHHHHHHHHcChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 0 00 0000012233443222 22223333445555666665666443211
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHH-HHHHHHHHHHHHHH-hh---cch-hHHHHHHHH
Q 014304 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT-IMFTLSCLFLLPLV-TY---QSN-ILTTGLLFG 332 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~-~~~~~~~~~~~~~~-~~---~~~-~~~~~~~~~ 332 (427)
+.+.........+..+...++.++.+++.||+|||+... .+.....+....+. .. .++ +........
T Consensus 253 -------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 325 (402)
T TIGR00897 253 -------GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIA 325 (402)
T ss_pred -------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence 011111112223345667888899999999999988653 22222222211111 11 111 211111122
Q ss_pred HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014304 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
..++..+ .........|..| +.|+++.|+.+...++++.++|.+.+.+.+..+....+.+.+++.+++.+...++
T Consensus 326 ~G~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 326 LGIFLAG-YVPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHH-HHHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222 2223445577766 4799999999999999999999999988887765566677777776766665543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-18 Score=168.45 Aligned_cols=119 Identities=14% Similarity=0.060 Sum_probs=98.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.++++.....++.+...+++++.++++.|+++|++.+.. +...+++.|+.|+++|++..++......+|..+
T Consensus 73 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (406)
T PRK15402 73 DRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLL 152 (406)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998875 455677789999999998888888777788888
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHH-HhhcccCcch
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPR 144 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~-~~~~lpESP~ 144 (427)
++.++..+....+||+.+++.++..++..+ .++.+||+++
T Consensus 153 g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 153 GPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 877766665667999999888777665443 3445777754
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-18 Score=173.23 Aligned_cols=334 Identities=14% Similarity=0.082 Sum_probs=187.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhh-ccCCCcchhHHHHHHHHHHHhHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLE-FVPPSNRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E-~~p~~~Rg~~~~~~~~~~~iG~~ 103 (427)
||+|||+.++++..++.++++.+++++|+++++++|+++|+|.|+. +.....+.+ +.|+++|++..++....+.+|..
T Consensus 66 D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~ 145 (495)
T PRK14995 66 DRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAA 145 (495)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999998875 444444544 45789999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHhhhHHHHHHH-HHhhcccCcchhHhhcCchHHHHHHHH------HHHh-hcCCCCCCccc
Q 014304 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALE------KIAQ-VNKTKLPNGKL 175 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP~~L~~k~r~~ea~~~l~------~~~~-~~~~~~~~~~~ 175 (427)
+++.++..+....+||+.|++.....++.. +..+++||+|.-- +++.+.....+. .... .+..+......
T Consensus 146 ~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 223 (495)
T PRK14995 146 FGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLW 223 (495)
T ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchH
Confidence 999998888888899999998765555543 4456678877411 111111111000 0000 00000000000
Q ss_pred ccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014304 176 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDT 255 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~ 255 (427)
.... . ..-........... +.+.++...+ .++++.+...... ...+.....+++...+.|...+..
T Consensus 224 ~~~~-~---~~~~~~~l~~f~~~-----e~~~~~p~~~-~~lf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lq~v- 289 (495)
T PRK14995 224 VTSL-T---LLTGALLLGLFIRT-----QLAASRPMID-MRLFTHRIILSGV---VMAMTAMITLVGFELLMAQELQFV- 289 (495)
T ss_pred HHHH-H---HHHHHHHHHHHHHH-----HhcCCCCCcC-HHHhCCcccHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 0000 0 00000000000000 0000001111 2344433222221 112222233333333333221100
Q ss_pred CCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-h-cch-hHHHHHHHH
Q 014304 256 RCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-Y-QSN-ILTTGLLFG 332 (427)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~ 332 (427)
.+.+............+...++..+.+.++||+|||+.+..+....++....+.. . .++ +.......+
T Consensus 290 ---------~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 360 (495)
T PRK14995 290 ---------HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMAL 360 (495)
T ss_pred ---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 0111111112223345566777889999999999999877666554443333222 1 122 221222222
Q ss_pred HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHh
Q 014304 333 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~ 384 (427)
..++.............+..|.+.|+.+.++.+....+|+.+++.+.+.+.+
T Consensus 361 ~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 361 LGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333334566677788999999999999999999999988877776653
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-18 Score=165.90 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=101.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+.++..++.+...+++|+..++++|++.|++.+.. +....++.|+.|+++|++..++.+....+|..+
T Consensus 51 d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 130 (377)
T PRK11102 51 DSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLL 130 (377)
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998875 456678899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHH-HHhhcccCcc
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESP 143 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP 143 (427)
++.+...+....+||+.+.+.++..++.. +..+++||++
T Consensus 131 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 131 APIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 88887666666899999988877766543 3445677764
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-18 Score=168.24 Aligned_cols=314 Identities=11% Similarity=-0.036 Sum_probs=183.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||++++++.++..++++..+++++. ++.|+++|++.|.. ++..+++.|+.|+++|+++.++.+....+|.++
T Consensus 63 Dr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~ 139 (393)
T PRK11195 63 DSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILL 139 (393)
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999888777664 78999999999876 667888999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.++..+.. +.|+..+.+.+...++..+..+.+||+|+... ++.++..+.+++.
T Consensus 140 Gp~lgG~l~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~---------------------- 194 (393)
T PRK11195 140 GTVLGGALAD-PHAEAALAVCALIYLLAALFNLFIPRLGARRP--GQSWNPIALLRDF---------------------- 194 (393)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCccccc--ccCCCHHHHHHHH----------------------
Confidence 9888766544 34777777666554444555667898875311 0100000000000
Q ss_pred CCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 014304 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL-WLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 263 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 263 (427)
...++.+++.+..+..+.. ...+.......|....+.+...+
T Consensus 195 --------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg----------- 237 (393)
T PRK11195 195 --------------------------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALG----------- 237 (393)
T ss_pred --------------------------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence 0012233433333332222 22222222233333333332221
Q ss_pred CCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHh
Q 014304 264 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 343 (427)
Q Consensus 264 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (427)
.+...........+++.+++.++.+.+.||.++|+.+..+.... .....+....+.+......+...++.......
T Consensus 238 ---~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~ 313 (393)
T PRK11195 238 ---ITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILMG-LVVLLMALQHSLLPAYPLLILIGALGGFFVVP 313 (393)
T ss_pred ---CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence 11111122334445667778888888899888887666554332 22222222222222222222222222222233
Q ss_pred HHhhccccCccch-hhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014304 344 SLIYAAEIYPTSV-RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 344 ~~~~~~ElfPt~~-R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
......|.-|++. |+++.++.+...+++..++..+...+ ...+-...+.+.+...++++...+.+
T Consensus 314 ~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 314 MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555567766665 79999999999999988888777744 34443333444333334444444443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-17 Score=165.26 Aligned_cols=286 Identities=12% Similarity=0.102 Sum_probs=172.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+..+..++.++.++++|+.++++.|+++|++.+.. .....+..|+.|+++|+...+.......+|..+
T Consensus 66 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (401)
T PRK11043 66 DRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPAL 145 (401)
T ss_pred hhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998765 344567789999999988888877778888888
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.++..+....+||..+.+.++..++..+..++++|+++- + +.++.+
T Consensus 146 g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~---------------------------- 193 (401)
T PRK11043 146 APLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKA---R-KQSQDA---------------------------- 193 (401)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc---c-ccchHH----------------------------
Confidence 88777666667899999988887776665555555665430 0 000000
Q ss_pred CCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccC
Q 014304 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS 264 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 264 (427)
..++++++.+......+. .......++....+.|.+.+..
T Consensus 194 ---------------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~---------- 233 (401)
T PRK11043 194 ---------------------------LTFKQLLKSKTYLGNVLI---FAACSAAFFAWLTGSPFILEQM---------- 233 (401)
T ss_pred ---------------------------HHHHHHHcChhHHHHHHH---HHHHHHHHHHHHHHhHHHHHHc----------
Confidence 012222222111111111 1111122222222333322110
Q ss_pred CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH---HHhh-cchhHHHHH-HHHHHHHHhh
Q 014304 265 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP---LVTY-QSNILTTGL-LFGARMCVMG 339 (427)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~-~~~~~~~~~~ 339 (427)
+.+............+...+|.++.+++.||+|||+..........+.... .... .+....... .....+....
T Consensus 234 -g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (401)
T PRK11043 234 -GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGA 312 (401)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 111111111222334456677788889999999998664443332222221 1111 112211111 1112222223
Q ss_pred hhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
.++.......|.+|. .|+++.|+.+..+..++..++.+.+.+.+.
T Consensus 313 ~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 313 IYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344455566677775 699999999999988888888888877653
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-18 Score=164.23 Aligned_cols=281 Identities=12% Similarity=0.069 Sum_probs=168.2
Q ss_pred hhhhc-----cchhHH-HHHHHHHHHHHHHhhcch---hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHH
Q 014304 24 HLWQN-----LVRMGF-LGEALVTAGAGLLSSFSP---NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI 93 (427)
Q Consensus 24 ~~~~~-----GRk~~l-~~~~~~~~i~~~~~~~a~---~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~ 93 (427)
..||+ ||||.+ +.+.++.++..+..++.+ +...+....++.|++.+.. ++..+++.|++|+|+|+++.++
T Consensus 44 ~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~ 123 (356)
T TIGR00901 44 LVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTI 123 (356)
T ss_pred HHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHH
Confidence 34576 999975 567777777777777774 4556777777777666554 4567788999999999999999
Q ss_pred HHHHHHHhHhHHHHHHHHhcCCCC--------hhHHHHhhhHHHHHHHHHhh-cccCcchhHhhcCchHHHHHHHHHHHh
Q 014304 94 FSSFWTIGSVSEAIGAWIIMPRLD--------WRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQ 164 (427)
Q Consensus 94 ~~~~~~iG~~~~~~~~~~~~~~~~--------WR~~~~~~~i~~~i~~~~~~-~lpESP~~L~~k~r~~ea~~~l~~~~~ 164 (427)
...++.+|.++++.++..+.+..+ ||..|.+.++..++..+..+ ..||+++. +.+.++.++.
T Consensus 124 ~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~~------ 194 (356)
T TIGR00901 124 YIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQA------ 194 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHHH------
Confidence 999999999998888766655556 99999999887766555544 35664321 0000000000
Q ss_pred hcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014304 165 VNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVV 244 (427)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~ 244 (427)
....++++++++..++.+......+.....++...
T Consensus 195 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (356)
T TIGR00901 195 ---------------------------------------------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAAT 229 (356)
T ss_pred ---------------------------------------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 00122333433332233333333333444455444
Q ss_pred HHHHHhhccccCCCCCCccCCCCCChhH-HHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh--c
Q 014304 245 LLISELSSLDTRCRSPLMFSHHPQDANL-YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--Q 321 (427)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~--~ 321 (427)
.+.+...... +.+.... ........+..+++.++++++.||+|||+.+..+.++..+........ .
T Consensus 230 ~~~~~~l~~~-----------g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (356)
T TIGR00901 230 VLTTLFLLDM-----------GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASN 298 (356)
T ss_pred HHHHHHHHHc-----------CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4433322110 1111111 111222234567788999999999999888766655544433322211 1
Q ss_pred --------ch-hHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhh
Q 014304 322 --------SN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR 369 (427)
Q Consensus 322 --------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~ 369 (427)
++ +......++..++....+.....+..|.+|++.|++..|+.+...+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 299 GHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred CcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 11 2112222222344445667789999999999999999999887654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-18 Score=188.43 Aligned_cols=294 Identities=13% Similarity=-0.051 Sum_probs=174.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSS---FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~---~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||++++++.++..++.++.. .++++++++++|++.|++.|.. ++..+++.|++|+++|++++++.+....+|
T Consensus 72 Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig 151 (1146)
T PRK08633 72 DKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVA 151 (1146)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHH
Confidence 599999999998877666665544 4578999999999999999876 566788899999999999999999999999
Q ss_pred HhHHHHHHHHhcCC---------CChhHHHHhhhH-HHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCC
Q 014304 102 SVSEAIGAWIIMPR---------LDWRWLLGLSSI-PSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLP 171 (427)
Q Consensus 102 ~~~~~~~~~~~~~~---------~~WR~~~~~~~i-~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~ 171 (427)
.+++++++.++... .+|++.+.+.++ ..++.++..+.+||+|++...+++.++ .
T Consensus 152 ~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-- 215 (1146)
T PRK08633 152 ILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKK--------------Y-- 215 (1146)
T ss_pred HHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccc--------------c--
Confidence 99998887665443 245555444333 333344445667988864211000000 0
Q ss_pred CcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 014304 172 NGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL-WLLLFGNSFAYYAVVLLISEL 250 (427)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~l 250 (427)
.........++.+++.+..+..++. ...++.. +....+.+..
T Consensus 216 ---------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 258 (1146)
T PRK08633 216 ---------------------------------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFIS----QLAQANFPAY 258 (1146)
T ss_pred ---------------------------------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH----HHHHHhhHHH
Confidence 0000001233444544332222221 1112111 1111111211
Q ss_pred hccccCCCCCCccCCCCCCh-hHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 014304 251 SSLDTRCRSPLMFSHHPQDA-NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGL 329 (427)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (427)
.... .+.+.. ..........++.+++.++++++.||.++|..+.++.++.++..+.+....+.+...+.
T Consensus 259 ~~~~----------~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1146)
T PRK08633 259 AKEV----------LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVL 328 (1146)
T ss_pred HHHH----------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1000 001111 11222334456667788899999999998887766555544444333332222222222
Q ss_pred HHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHH
Q 014304 330 LFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l 382 (427)
.++..++........+.+..|..|++.|+++.|+.+.+..+++++++.+...+
T Consensus 329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 329 FFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred HHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333456688899999999999999999999999887777665544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-18 Score=172.29 Aligned_cols=328 Identities=11% Similarity=0.026 Sum_probs=180.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHH-HHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLIT-LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v-~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~ 103 (427)
||+|||+.++.+.++..++.+..++++|++++++ .|++.|++.|.. +....++.|+.| ++|++..++.+.+..+|..
T Consensus 79 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~ 157 (455)
T TIGR00892 79 NRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLS 157 (455)
T ss_pred HHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHH
Confidence 6999999999999999999999999999998875 579999999864 444556678886 7899999999999999998
Q ss_pred HHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhh-cccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccC
Q 014304 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 182 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~-~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (427)
+++.+...+....|||+.|++.++..++..+..+ ..|+.+.. .+.+. +.+ ++. +. +
T Consensus 158 ~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~-~~~---------~~~--~~---------~ 214 (455)
T TIGR00892 158 TLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKS-KSK---------EGL--PP---------D 214 (455)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccc-ccc---------ccC--CC---------C
Confidence 8877766666678999999998877665443332 33332210 00000 000 000 00 0
Q ss_pred CCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 014304 183 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
... ++.... . ..++.. ....+ .+++.+. .+......+...+.++....+.+......
T Consensus 215 ~~~----~~~~~~-~-----~~~~~~-~~~~~-~~~~~~~---~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-------- 271 (455)
T TIGR00892 215 GST----KKLSKK-S-----TAEKIN-RFLDF-SLFTHRG---FLVYLSGNVIMFLGFFAPIIFLVPYAKDK-------- 271 (455)
T ss_pred Ccc----cccccc-c-----hhhhhh-hhcch-HHhcCch---HHHHHHHHHHHHHHccchHHHHHHHHHHc--------
Confidence 000 000000 0 000000 00011 2232221 11111222222333333333333222110
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhh--hChhHHHHH--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHh
Q 014304 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT--AGRKLSITI--MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVM 338 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~--~GRR~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (427)
+.+.........+.++..+++..+.+++.|| .++|+.... +.+..++..+......+.+..........++..
T Consensus 272 ---g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g 348 (455)
T TIGR00892 272 ---GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFG 348 (455)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc
Confidence 0111111122234455666677778999997 333433322 222222222222222222221121222222223
Q ss_pred hhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q 014304 339 GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSI 403 (427)
Q Consensus 339 ~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~ 403 (427)
......+.+..|.+|.+.|+++.|+.+....++++++|.+.+.+.+..+ ....+.+.+++.++++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 349 SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG 414 (455)
T ss_pred hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence 3345667888999999999999999999999999999999887776543 2234444444444443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=167.83 Aligned_cols=288 Identities=16% Similarity=0.140 Sum_probs=164.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSP-NYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~-~~~~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.++++.++..++.++.++++ |+.+++++|+++|++.+......+++.|+.|+++|++..++...+..+|..+
T Consensus 62 dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 141 (366)
T TIGR00886 62 DKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGV 141 (366)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHH
Confidence 699999999999999999999999999 9999999999999985544455677889999999999999998777777776
Q ss_pred HHHHHHHhcC----------CCChhHHH-HhhhHH-HHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCC
Q 014304 105 EAIGAWIIMP----------RLDWRWLL-GLSSIP-SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPN 172 (427)
Q Consensus 105 ~~~~~~~~~~----------~~~WR~~~-~~~~i~-~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~ 172 (427)
++.+...+.. ..+||+.+ ...++. .++..+.....+|+|+- +.++.++ +.++
T Consensus 142 ~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------~~~~--- 205 (366)
T TIGR00886 142 AQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG-----KPATGKL--------SFKG--- 205 (366)
T ss_pred HHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcc-----cccchhc--------cccc---
Confidence 6655433221 34899998 443433 33344445566887741 1111000 0000
Q ss_pred cccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014304 173 GKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSS 252 (427)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~ 252 (427)
+..+. + ++......+.++.+. .+......+.....+++...+.+....
T Consensus 206 ---------~~~~~----------------~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T TIGR00886 206 ---------ARWSV----------------G----TGALGDQLKVFRDRH---TWILALLYSVTFGSFLGVSSIFAMFFK 253 (366)
T ss_pred ---------ccccc----------------c----chhHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 000012223333221 111222222222233333333333221
Q ss_pred cccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-hcc--hhHH-HH
Q 014304 253 LDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQS--NILT-TG 328 (427)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~ 328 (427)
.. .+.+.........+..+..+++.++.+++.||+|||+.+..+..........+.. ..+ +... ..
T Consensus 254 ~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
T TIGR00886 254 DQ----------FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV 323 (366)
T ss_pred HH----------cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 10 0011111111223345566778888999999999987765554433333322222 121 2221 12
Q ss_pred HHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhH
Q 014304 329 LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGG 372 (427)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~ 372 (427)
......++.....+..+.+.+|++| +.|+++.|+.+..+++|+
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 2222222223344567888999998 699999999999988764
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-17 Score=159.64 Aligned_cols=303 Identities=14% Similarity=0.092 Sum_probs=177.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+.++..++.+..++++|++.++++|+++|++.|.. +....++.+..|+++|++..+.....+.+|..+
T Consensus 66 dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 145 (381)
T PRK03633 66 KRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVL 145 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999876 445566678889999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
++.+...+.....|+..+....+...+........+|++. ++
T Consensus 146 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~--------------- 187 (381)
T PRK03633 146 GQLLVSKVSTELMSVLPWVTGLVLAAILPLLFTRILNQQA-----------------------EN--------------- 187 (381)
T ss_pred HHHHHhcccccccchHHHHHHHHHHHHHHHHHhcccCCCC-----------------------CC---------------
Confidence 8887766544332333332221111111111111111100 00
Q ss_pred CCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccC
Q 014304 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS 264 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 264 (427)
+ + + + ++.++++.+..+..+..... ....+.....+.|......
T Consensus 188 ~-~-----------------~--~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lp~~~~~~---------- 230 (381)
T PRK03633 188 H-D-----------------S--T----SIWPMLKLRQARLGVNGCII---SGIVLGSLYGLMPLYLNHQ---------- 230 (381)
T ss_pred C-C-----------------C--C----CHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHc----------
Confidence 0 0 0 0 01112222211111111111 1111111222233322110
Q ss_pred CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhH
Q 014304 265 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVS 344 (427)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (427)
+.+.........+..+..+++.++.+++.||+|||+.+..+.....+....+. .. ... ...............+..
T Consensus 231 -g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~-~~~-~~~~~l~g~~~~~~~p~~ 306 (381)
T PRK03633 231 -GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQ-AAM-APALFILGAAGFTLYPVA 306 (381)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hh-HHH-HHHHHHHHHHHHhHHHHH
Confidence 11111111222344556677888899999999999987766555444333222 11 111 111111112222334566
Q ss_pred HhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 014304 345 LIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVM 407 (427)
Q Consensus 345 ~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 407 (427)
..+..|..|++.++...+..+....+|+.++|.+.+.+.+..+....+.+.+.+.+++.+..+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 307 MAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 777889999988887778877778899999999999988877766666776666665544433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-17 Score=161.41 Aligned_cols=120 Identities=16% Similarity=0.129 Sum_probs=102.5
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccch-hhhhhhhhccCCCcchhHHHHHHHHHHHhHh
Q 014304 25 LWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 25 ~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~ 103 (427)
.||+|||++++.+.+++.++++++++++|+++++++|+++|++.+... ....+..|+.|+++|++.+++......+|..
T Consensus 75 ~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
T PRK15403 75 SDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPI 154 (413)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999987643 3455677999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHhhhHHHHHHHHH-hhcccCcch
Q 014304 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPR 144 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP~ 144 (427)
++++++..+....+||+.|++.++.+++..+. ++.+||+++
T Consensus 155 ~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 155 IGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 98888777666689999999988877765543 456788764
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=165.77 Aligned_cols=329 Identities=18% Similarity=0.242 Sum_probs=209.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPN--YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 102 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~--~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~ 102 (427)
+|+|-|+++.++.++.++.++++-.+.+ ++.+++.|+++|++.|.. ++...+...|+|+++|++..++...+..+|.
T Consensus 98 ~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~ 177 (466)
T KOG2532|consen 98 DKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGT 177 (466)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999987754 457899999999999987 6677888999999999999999999999999
Q ss_pred hHHHHHHHHhcCC-CChhHHHHhhhHHHHHHHHHhh-cccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccc
Q 014304 103 VSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 180 (427)
Q Consensus 103 ~~~~~~~~~~~~~-~~WR~~~~~~~i~~~i~~~~~~-~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~ 180 (427)
+++..++..+-.. .||+.+|++.++.+++..+.++ +.-|+|+- ++.-.++. ++++++...+
T Consensus 178 v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~--h~~is~~E---l~~I~~~k~~------------ 240 (466)
T KOG2532|consen 178 IITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK--HPNISEKE---LKYIEKGKSE------------ 240 (466)
T ss_pred HHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc--CCCCCHHH---HHHHHhcccc------------
Confidence 9988776665554 8999999999999988776654 55788863 12111211 1222111000
Q ss_pred cCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 014304 181 TLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~ 260 (427)
+..+.+ ...+|+++++.+ ..+..|...++....++.+..+.|...+..
T Consensus 241 ----------------------~~~~~~-~~vP~~~i~ts~---~vwai~~~~f~~~~~~~~l~~y~PtY~~~V------ 288 (466)
T KOG2532|consen 241 ----------------------AHVKKK-PPVPYKAILTSP---PVWAIWISAFGGNWGFYLLLTYLPTYLKEV------ 288 (466)
T ss_pred ----------------------cccCCC-CCCCHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH------
Confidence 000000 113666776542 344555566667777776666666544211
Q ss_pred CccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhCh--------hH-HHHHHHHHHHHHHHHHHhhcc-hh-HHHHH
Q 014304 261 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR--------KL-SITIMFTLSCLFLLPLVTYQS-NI-LTTGL 329 (427)
Q Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GR--------R~-~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ 329 (427)
.+.+.........+..+...+..+++|.++||.-+ |+ .-.++..+.+++++.+.+..+ +. ....+
T Consensus 289 ----L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~ 364 (466)
T KOG2532|consen 289 ----LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVIL 364 (466)
T ss_pred ----hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHH
Confidence 11222222334456666677777889999998744 23 334555666655555544322 22 22222
Q ss_pred HHHHHHHHhhhhHhHHhhccccC-ccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc--hh-HHHHHHHHHHHHHHHH
Q 014304 330 LFGARMCVMGAFTVSLIYAAEIY-PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH--QM-TAVVLLVVVIVTSILS 405 (427)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~Elf-Pt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~--~~-~~~~~~~~~~~i~~~~ 405 (427)
+.+. .+..+. ...-.+.+-.- .++--+...|+++.++.+.++++|.+.+.+..... .+ ..+++.+++.+++.++
T Consensus 365 l~~~-~~~~g~-~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~ 442 (466)
T KOG2532|consen 365 LTIA-IGLSGF-NISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNII 442 (466)
T ss_pred HHHH-HHHccc-chhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchh
Confidence 2222 222222 22333333333 67788899999999999999999999987774211 22 2344555555555544
Q ss_pred Hhhc
Q 014304 406 VMLI 409 (427)
Q Consensus 406 ~~~l 409 (427)
..++
T Consensus 443 f~~f 446 (466)
T KOG2532|consen 443 FLFF 446 (466)
T ss_pred eeEe
Confidence 4333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-16 Score=157.82 Aligned_cols=315 Identities=15% Similarity=0.045 Sum_probs=177.5
Q ss_pred hhhc-----cchh-HHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHH
Q 014304 25 LWQN-----LVRM-GFLGEALVTAGAGLLSSFSP---NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIF 94 (427)
Q Consensus 25 ~~~~-----GRk~-~l~~~~~~~~i~~~~~~~a~---~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~ 94 (427)
.||+ |||| .+.++.++.+++.+..++.+ +++.+++..++.|+..... ++..+++.|+.|+++|+++.++.
T Consensus 56 ~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~ 135 (402)
T PRK11902 56 MDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVK 135 (402)
T ss_pred HHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHH
Confidence 3687 8876 67777888877777777763 4677888888877666554 56678889999999999999999
Q ss_pred HHHHHHhHhHHHHHHHHhcCC-CChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCc
Q 014304 95 SSFWTIGSVSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNG 173 (427)
Q Consensus 95 ~~~~~iG~~~~~~~~~~~~~~-~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~ 173 (427)
..++.+|.++++.+...+... .|||..|.+.++..++..+..+++||+++.. ++.++..+
T Consensus 136 ~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~~---------------- 196 (402)
T PRK11902 136 VLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSLGE---------------- 196 (402)
T ss_pred HHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchhHH----------------
Confidence 999999999988777666554 5999999988877666555556678766421 00000000
Q ss_pred ccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014304 174 KLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSL 253 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~ 253 (427)
+....++++++++..+..+............++.. ..+.+...
T Consensus 197 -----------------------------------~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~--~~~~l~~~ 239 (402)
T PRK11902 197 -----------------------------------AVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSL--STTFLIRG 239 (402)
T ss_pred -----------------------------------HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHH--HHHHHHHh
Confidence 00012334454444333333222211111111111 11211110
Q ss_pred ccCCCCCCccCCCCCChhHHHHH-HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH---Hhhcch-hHHHH
Q 014304 254 DTRCRSPLMFSHHPQDANLYIDE-FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTYQSN-ILTTG 328 (427)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~ 328 (427)
.+.+........ .......+++.++++++.||+|||+.+..+.....+....+ ....++ +....
T Consensus 240 -----------~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 308 (402)
T PRK11902 240 -----------AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMAL 308 (402)
T ss_pred -----------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 011111111111 12223467888999999999999987765544433322211 222222 22111
Q ss_pred HHHH----HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 014304 329 LLFG----ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSIL 404 (427)
Q Consensus 329 ~~~~----~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 404 (427)
.... ..+...........+..+.+|.+.++ ..+.+..+++.+++.+.+.+.+..+....+...+.+++++.+
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~ 384 (402)
T PRK11902 309 AIGIENLCGGMGTAAFVALLMALCNRSFSATQYA----LLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLA 384 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 1111 11122233456677888888866544 444444455554444667777776655556666666666666
Q ss_pred HHhhcc
Q 014304 405 SVMLIP 410 (427)
Q Consensus 405 ~~~~l~ 410 (427)
++...+
T Consensus 385 ~~~~~~ 390 (402)
T PRK11902 385 LLWLMR 390 (402)
T ss_pred HHHHHh
Confidence 655544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-17 Score=160.79 Aligned_cols=115 Identities=13% Similarity=0.067 Sum_probs=97.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+.++..+..++.+...++++++.++++|++.|++.|.. +...+++.|+.|+++|++..++......+|..+
T Consensus 71 dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~i 150 (400)
T PRK11646 71 DRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVI 150 (400)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998754 556777889999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHH-HHhhcccC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPE 141 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpE 141 (427)
++.++..+. ..+||+.|++.++..++.. +..+++||
T Consensus 151 g~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 151 GALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 988876666 6799999998877655543 22344554
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-16 Score=159.07 Aligned_cols=302 Identities=12% Similarity=0.008 Sum_probs=175.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLS---SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~---~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||+++..+..+++++.++. ++++|+.+++++|+++|+|.|.. .....++.|+.|+++|+..+++.+.++.+|
T Consensus 86 dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G 165 (438)
T PRK10133 86 KKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG 165 (438)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHH
Confidence 69999999999999999999875 57899999999999999999986 456777789888887877789999999999
Q ss_pred HhHHHHHHHHhc----C----------------C------CChhHHHHh-hhHHHHHHHHH-hhcccCcchhHhhcCchH
Q 014304 102 SVSEAIGAWIIM----P----------------R------LDWRWLLGL-SSIPSFILLAF-LGFQPESPRYLCLKGRTA 153 (427)
Q Consensus 102 ~~~~~~~~~~~~----~----------------~------~~WR~~~~~-~~i~~~i~~~~-~~~lpESP~~L~~k~r~~ 153 (427)
..++++++..+. + . .+||.+|+. .++..++.++. ...+||.|. + +.+
T Consensus 166 ~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~-~~~ 240 (438)
T PRK10133 166 AIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----D-NHS 240 (438)
T ss_pred HHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-ccc
Confidence 998887654321 0 0 256666653 33333332222 334554221 0 000
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHH
Q 014304 154 EAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLL 233 (427)
Q Consensus 154 ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (427)
+ + ++ .+....++++++.+..+...+..+.
T Consensus 241 ~-----------~-~~--------------------------------------~~~~~~~~~ll~~~~~~~~~l~~~~- 269 (438)
T PRK10133 241 D-----------A-KQ--------------------------------------GSFSASLSRLARIRHWRWAVLAQFC- 269 (438)
T ss_pred c-----------c-cc--------------------------------------cchhhhHHHHHhCchHHHHHHHHHH-
Confidence 0 0 00 0000112233433322222221111
Q ss_pred HHHHHHHHHHHHHHH-HhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHH
Q 014304 234 FGNSFAYYAVVLLIS-ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL 312 (427)
Q Consensus 234 ~~~~~~~y~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~ 312 (427)
.....++...|.+ .+.+.. .+.+............++.+.|.++++++.||+|||+.+..+..+++.
T Consensus 270 --~~~~~~~~~~~~~~~l~~~~----------~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~ 337 (438)
T PRK10133 270 --YVGAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_pred --HHHHHHHHHHHHHHHHhhhc----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 2222222222322 111100 011111112223444566788889999999999999987776555443
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc-hhHH
Q 014304 313 FLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTA 391 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~ 391 (427)
.+........ ...........++....++..+....|.+|.+ .+++.++.. +..+++.+.|.+.+.+.+..+ ....
T Consensus 338 ~~~~~~~~~~-~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~ 414 (438)
T PRK10133 338 LCLISAFAGG-HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHH
Confidence 3332222222 12222333444555666788888999999875 567777775 455778888888887777654 3344
Q ss_pred HHHHHHH
Q 014304 392 VVLLVVV 398 (427)
Q Consensus 392 ~~~~~~~ 398 (427)
+++...+
T Consensus 415 ~~v~~~~ 421 (438)
T PRK10133 415 ELIPALC 421 (438)
T ss_pred HHHHHHH
Confidence 4443333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=164.23 Aligned_cols=304 Identities=15% Similarity=0.193 Sum_probs=193.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+.-.+.+....+.+++.++++....|++.+++.|++.|+..++. |....++.-|..+++||+.++++..+.++|.++
T Consensus 106 ~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ 185 (495)
T KOG2533|consen 106 DRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIF 185 (495)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHH
Confidence 5888788899999999999999999999999999999999999876 777788899999999999999999999999999
Q ss_pred HHHHHHHh------cCCCChhHHHHhhhHHHHHHH-HHhhcccCcch--hHhhcCchHHHHHHHHHHHhhcCCCCCCccc
Q 014304 105 EAIGAWII------MPRLDWRWLLGLSSIPSFILL-AFLGFQPESPR--YLCLKGRTAEAHRALEKIAQVNKTKLPNGKL 175 (427)
Q Consensus 105 ~~~~~~~~------~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP~--~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~ 175 (427)
++++++.+ ....|||++|++.++..++.. +..+++|+.|. |+.++... +-+.+++++.+++..+
T Consensus 186 ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek---~~~~~~~~~~~~~~~~---- 258 (495)
T KOG2533|consen 186 GGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEK---ELVVERLRESPSGGIE---- 258 (495)
T ss_pred HHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHH---HHHHHHHHhccCCCcc----
Confidence 99998875 345799999999998887765 44568999997 44322111 1112222222111000
Q ss_pred ccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014304 176 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDT 255 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~ 255 (427)
++ .....+++.++.+ +++...+.+++.....|+...|.|.+.....
T Consensus 259 -----------------------------~~--~~~~~~~~a~~dp---~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~ 304 (495)
T KOG2533|consen 259 -----------------------------NK--FKWKGFKEALKDP---GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNG 304 (495)
T ss_pred -----------------------------cc--cCHHHHHHHHhch---hHHHHHHHHHHHhhccccHHHHHHHHHHcCC
Confidence 00 0112333333321 2333444555666667777777776543210
Q ss_pred CCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhh----hChhHHHHHHHHHHHHHH-HHHHhhcchhHHHHHH
Q 014304 256 RCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT----AGRKLSITIMFTLSCLFL-LPLVTYQSNILTTGLL 330 (427)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~----~GRR~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 330 (427)
+.+....-.......++++++.+++++++|| ..+|........+..... ..+.............
T Consensus 305 ----------~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~ 374 (495)
T KOG2533|consen 305 ----------GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAF 374 (495)
T ss_pred ----------CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHH
Confidence 0111111112334466778899999999999 566665555433322222 1111121122222222
Q ss_pred HHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHh-hHhHhHHHHHHH
Q 014304 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAV 380 (427)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~-~~~~~~~p~~~~ 380 (427)
+...+.......+...++++....+.|..+...++..+ ..++.++|.+..
T Consensus 375 ~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~ 425 (495)
T KOG2533|consen 375 LIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFR 425 (495)
T ss_pred HhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcc
Confidence 22223334445677888888888888887777776665 466767665544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-16 Score=154.16 Aligned_cols=287 Identities=13% Similarity=0.040 Sum_probs=179.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSF---SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~---a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||+++.++.++++++.++... .+|+.++++.|++.|+|.|.. ....++..|..|+++|++..++.+.+..+|
T Consensus 63 ~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG 142 (410)
T TIGR00885 63 KKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFG 142 (410)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHH
Confidence 6999999999999999999888543 468999999999999999986 566778889999999999999999999999
Q ss_pred HhHHHHHHHHhcC--------------------------CCChhHHHHhhhHHHHHHHHHh--hcccCcchhHhhcCchH
Q 014304 102 SVSEAIGAWIIMP--------------------------RLDWRWLLGLSSIPSFILLAFL--GFQPESPRYLCLKGRTA 153 (427)
Q Consensus 102 ~~~~~~~~~~~~~--------------------------~~~WR~~~~~~~i~~~i~~~~~--~~lpESP~~L~~k~r~~ 153 (427)
..+++.+...+.. ..+||+++++.++..++..+.. ..+||.++ +
T Consensus 143 ~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~ 214 (410)
T TIGR00885 143 SIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------S 214 (410)
T ss_pred HHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------c
Confidence 9988877554321 1359999988777665543332 22443221 0
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHH
Q 014304 154 EAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLL 233 (427)
Q Consensus 154 ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (427)
+.+ + + + . + ...+++++++......+..+++
T Consensus 215 ~~~------------~-----------------~---~--------------~-~---~~~~~~~~~~~~~~~~l~~f~y 244 (410)
T TIGR00885 215 DAK------------Q-----------------I---S--------------F-S---ASLSRLARIRHYREGVIAQFFY 244 (410)
T ss_pred ccc------------c-----------------c---c--------------c-h---hhHHHHHhChhHHHHHHHHHHH
Confidence 000 0 0 0 0 0 0111222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHH
Q 014304 234 FGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLF 313 (427)
Q Consensus 234 ~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~ 313 (427)
.+... +...+.+....... ..........+. ........+|-++++++.||+++|+.+.++.+.+.++
T Consensus 245 vg~e~---~~~s~l~~y~~~~~-------~~~~~~~a~~~~--~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 245 VGVQI---MCWTFIIQYAVRLI-------PGMTAGFAANYN--IGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHH---HHHHHHHHHHhhcc-------CCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 22221 22222222211000 000001111122 1222445678899999999999999887776666555
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 314 LLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
........+ ......+....++....|+..+....+..+.+.+..+.+++.+. +|+.+.|.+.+.+.+.
T Consensus 313 ~ll~~~~~~-~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 313 CLGSIFAGG-HVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 444433222 22233344444566667788999999999999887777777765 9999999999988874
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-16 Score=152.84 Aligned_cols=119 Identities=12% Similarity=0.073 Sum_probs=99.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccch-hhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+..+..++.+...+++|+..+++.|++.|++.|... ....+..|..|+++|++..++.+.+..+|..+
T Consensus 68 Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (394)
T PRK11652 68 DRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLL 147 (394)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999988653 34456679999999999999999999988888
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHH-HHhhcccCcch
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPR 144 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP~ 144 (427)
++.+...+....+||+.+.+.++..++.. ...+++||+|+
T Consensus 148 g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 148 APLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 88777666667899999998877665443 33456788764
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-16 Score=155.37 Aligned_cols=309 Identities=13% Similarity=0.063 Sum_probs=181.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+.++.++..++.+..++++|++.++++|++.|.+.+.. +....++.|..|+++|++..++.....++|..+
T Consensus 68 Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~i 147 (395)
T PRK10054 68 DKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTV 147 (395)
T ss_pred hhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999998876654 456778899999999999999999999999998
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHH-HhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 183 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~-~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
++.++..+. ..+||..|.+.++..++..+ ..+++||.++ +++.++ ++.
T Consensus 148 gp~l~~~l~-~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~----~~~~~~-~~~------------------------- 196 (395)
T PRK10054 148 GPPLGTLLV-MQSINLPFWLAAICSAFPLVFIQIWVQRSEK----AIATET-GSV------------------------- 196 (395)
T ss_pred HHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHHHHHhcccc----ccccch-hhh-------------------------
Confidence 888776654 36899999988776665433 3344555432 000000 000
Q ss_pred CCCCCCccchhccccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccCCCCCC
Q 014304 184 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAVVLLISE-LSSLDTRCRSPL 261 (427)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~-l~~~~~~~~~~~ 261 (427)
...++.++ ++.+...+.... ..+.+.....+.+. +....
T Consensus 197 ----------------------------~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~------- 237 (395)
T PRK10054 197 ----------------------------WSPSVLLQDKALLWFTCSGFL----ASFVSGAFASCISQYVMVVA------- 237 (395)
T ss_pred ----------------------------hhhhhhccCceehHHHHHHHH----HHHHHHHhhhhHHHHHHHhc-------
Confidence 00011121 111111111111 11111111111111 11000
Q ss_pred ccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHhhh
Q 014304 262 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL-TTGLLFGARMCVMGA 340 (427)
Q Consensus 262 ~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 340 (427)
..+..................+.....+.+.||.+||+.+..+.....+....+....++.. .........++....
T Consensus 238 --~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 315 (395)
T PRK10054 238 --DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIY 315 (395)
T ss_pred --ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Confidence 00001111111122222333444566788999999999877665444433333322222221 111112222222222
Q ss_pred hHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 014304 341 FTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVM 407 (427)
Q Consensus 341 ~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 407 (427)
.+....+..+.-|++.|++..+..+ .+++|..++|.+.+.+.+..+....+.+.+++..++.+...
T Consensus 316 ~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 316 APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 3455678889999999999988654 67899999999999999887665555565555555544443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-15 Score=151.94 Aligned_cols=331 Identities=12% Similarity=0.008 Sum_probs=177.3
Q ss_pred hhccc-hhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhh----hhhh----hccCCCcchhHHHHHH
Q 014304 26 WQNLV-RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFL----SWFL----EFVPPSNRGMWMVIFS 95 (427)
Q Consensus 26 ~~~GR-k~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~----~~~~----E~~p~~~Rg~~~~~~~ 95 (427)
||+|| |+.+.++.++..++..+..+.+++..+.+.|++.|++.+.. +... .+.. |......|.+..+
T Consensus 63 dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G--- 139 (418)
T TIGR00889 63 DKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG--- 139 (418)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh---
Confidence 58865 77888888888888888889999999999999999976543 2222 2222 3333333433333
Q ss_pred HHHHHhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccc
Q 014304 96 SFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL 175 (427)
Q Consensus 96 ~~~~iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~ 175 (427)
.+|..+++++...+....+|+. +++.++..++..+..+++||+|+ .+++.++ ..++ .
T Consensus 140 ---~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~---~~~~~~~---~~~~---~---------- 196 (418)
T TIGR00889 140 ---TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGVFALTLPDIPV---AKSTAKM---SIKV---M---------- 196 (418)
T ss_pred ---hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHhcCCCCCC---Ccccccc---CHHH---H----------
Confidence 2444555544443333345664 44445444444445567899874 0000000 0000 0
Q ss_pred ccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014304 176 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD 254 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 254 (427)
. . ...+++++ ++...-.+........+. .++. +..+.+.+.+
T Consensus 197 -------------------------------~--~-~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~g 239 (418)
T TIGR00889 197 -------------------------------L--G-LDAFILFKNKRMAIFFFFSMLLGAPLQ-ITNI--FGNGFLHEFG 239 (418)
T ss_pred -------------------------------h--h-hhHHHHhcCCCeeeHHHHHHHHHhHHH-HHHH--hHHHHHHHhc
Confidence 0 0 01112222 222111111111111111 1111 1111121110
Q ss_pred cCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchh---HH-HHHH
Q 014304 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNI---LT-TGLL 330 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~ 330 (427)
. ++.. ..+...........+..+..+++.++.+++.||+|||+.+..+.+..++....+.....+. .. ....
T Consensus 240 ~---~~~~-~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~ 315 (418)
T TIGR00889 240 R---NPEF-ADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSM 315 (418)
T ss_pred c---cccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 0 0000 0000001112233445567778888999999999999998887776655443333222111 11 1111
Q ss_pred HHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHH-HhhHhHhHHHHHHHHHHhhcc------hhHHHHHHHHHHHHHH
Q 014304 331 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANA-MGRIGGMVCPLVAVALVANCH------QMTAVVLLVVVIVTSI 403 (427)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~-~~~~~~~~~p~~~~~l~~~~~------~~~~~~~~~~~~~i~~ 403 (427)
++...+.....+....+.+|.+|++.|+++.|+.+. ...+|+.++|.+.+++.+..+ ....+.+.+++.+++.
T Consensus 316 ~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~ 395 (418)
T TIGR00889 316 IVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILA 395 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence 112222222334557789999999999999999984 567899999999998887643 2345666777777777
Q ss_pred HHHhhccccCCCCccccccc
Q 014304 404 LSVMLIPFETKGQELSDTVD 423 (427)
Q Consensus 404 ~~~~~l~pEtk~~~l~e~~~ 423 (427)
+..+++.||+++.-..|+.|
T Consensus 396 ~l~~~~~~~~~~~~~~~~~~ 415 (418)
T TIGR00889 396 VLFMIFFKYSHNAIKVDDRD 415 (418)
T ss_pred HHHHHHhCCcccCCCCcccc
Confidence 77777778997766555443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=150.87 Aligned_cols=309 Identities=17% Similarity=0.156 Sum_probs=200.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHH---HHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHHHHHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYI---TLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 102 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~---~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~ 102 (427)
||+|-|+...++.++..+-.+..+++.++. ++++++++.|++-|...+..++.+++.||+++|.++++.. .-++|.
T Consensus 74 drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~ 152 (417)
T COG2223 74 DRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGV 152 (417)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccH
Confidence 699999999999999999999998886555 9999999999985544566778899999999999999998 888888
Q ss_pred hHHHHHHHHhcCCCC---hhHHHHhhhHHHHH-HHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccc
Q 014304 103 VSEAIGAWIIMPRLD---WRWLLGLSSIPSFI-LLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 103 ~~~~~~~~~~~~~~~---WR~~~~~~~i~~~i-~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
.+...++..+....+ ||..-.+-.++.++ .+..++.+.+.|..- + +.++
T Consensus 153 av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r--------~----------~~~~--------- 205 (417)
T COG2223 153 AVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHR--------A----------SVKP--------- 205 (417)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh--------c----------cccc---------
Confidence 887777776665667 99987776655554 344455554444320 0 0000
Q ss_pred cccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
.. + .+++++++ .++++.+..+++.+.-.+-++..+.|++...+
T Consensus 206 -------~~------------------~-----~~~~~v~~---~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~---- 248 (417)
T COG2223 206 -------QL------------------P-----AQLKAVFS---NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ---- 248 (417)
T ss_pred -------cc------------------h-----hHHHHHhc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 00 0 01222332 23455566666655555556666666654211
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHH---HHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc------chhH-HHH
Q 014304 259 SPLMFSHHPQDANLYIDEFITSLAEIPGL---LLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ------SNIL-TTG 328 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~---~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~ 328 (427)
. ..+... ...+..+..++|. .++|+++||+|.++.....+..+.++...+.... .+.. ...
T Consensus 249 ----f--g~~~~~---Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 319 (417)
T COG2223 249 ----F--GLSPVT---AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVA 319 (417)
T ss_pred ----c--CCChhh---HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHH
Confidence 0 011111 1122233333343 4689999999888887777766666655544322 1112 222
Q ss_pred HHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHh
Q 014304 329 LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVM 407 (427)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~ 407 (427)
.......+...+.+..|..++-+||.+. +...|+...+|.+||+.-|...+...+..+ ....+.++..+.+++.+...
T Consensus 320 ~~l~l~~~~G~GnGsvfk~Ip~if~~~~-G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 320 VFLALFVFAGLGNGSVFKMIPVIFPKET-GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred HHHHHHHHhccCcchheeechHHHHhhh-hHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 2233334444556788999999998854 556699999999999999999988877766 44566777777777766554
Q ss_pred hc
Q 014304 408 LI 409 (427)
Q Consensus 408 ~l 409 (427)
..
T Consensus 399 ~~ 400 (417)
T COG2223 399 AL 400 (417)
T ss_pred HH
Confidence 43
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-16 Score=148.84 Aligned_cols=286 Identities=17% Similarity=0.158 Sum_probs=168.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccch-hhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+.++..+..++.+.. .+++...+++.|++.|++.|... ....+..|+.| ++|+++.++.+....+|..+
T Consensus 60 dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i 137 (355)
T TIGR00896 60 RRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAAL 137 (355)
T ss_pred HHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHH
Confidence 69999999999998888888877 78899999999999999998753 44556678886 58999999999999999888
Q ss_pred HHHHHHHhcCCC--ChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccC
Q 014304 105 EAIGAWIIMPRL--DWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 182 (427)
Q Consensus 105 ~~~~~~~~~~~~--~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (427)
++.+...+.... +||..+.+.++..++... .++||+++ +.+ .++ +
T Consensus 138 ~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~------~~~-----------~~~---~----------- 184 (355)
T TIGR00896 138 AAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQVRR------RVA-----------ANQ---T----------- 184 (355)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhhhcc------ccC-----------CCC---C-----------
Confidence 877655544332 499988776654433222 23444321 000 000 0
Q ss_pred CCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 014304 183 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262 (427)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 262 (427)
. + ++ ..+++++++. .+......+.....+++...+.|......
T Consensus 185 --~-----------------~-~~------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-------- 227 (355)
T TIGR00896 185 --T-----------------T-RL------TPVRIWRSPL---AWQVTVFFGLQSGLYYSLIGWLPAILISH-------- 227 (355)
T ss_pred --C-----------------C-CC------CCchhhcCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 0 0 00 0011122111 11112222233444555555555443211
Q ss_pred cCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhh
Q 014304 263 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~-GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
+.+.........+..+..+++.++.+++.||+ +||..+..+.....+....+....++.... ...+..++....+
T Consensus 228 ---g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~ 303 (355)
T TIGR00896 228 ---GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAF 303 (355)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHh
Confidence 11111112223345667788889999999999 566555555444433333222222222111 1122222222333
Q ss_pred HhHHhhcc-ccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc
Q 014304 342 TVSLIYAA-EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 342 ~~~~~~~~-ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~ 387 (427)
+....... +..|++.+++..++.+.++++++.++|.+.+++.+..+
T Consensus 304 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 304 PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444 44456788999999999999999999999998887654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-16 Score=172.24 Aligned_cols=296 Identities=13% Similarity=-0.076 Sum_probs=174.0
Q ss_pred hhccchhHHHH---HHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHh
Q 014304 26 WQNLVRMGFLG---EALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~l~~---~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||+++.. ..+...+..+.....+|+++++++|+++|++.+.. ++..+++.|+.|+++|++++++.+...++|
T Consensus 77 Dr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig 156 (1140)
T PRK06814 77 DKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIA 156 (1140)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHH
Confidence 69999997543 22233333333334589999999999999998875 677788899999999999999999999999
Q ss_pred HhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccccccccc
Q 014304 102 SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 181 (427)
Q Consensus 102 ~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~ 181 (427)
.+++++++.++....+||+.|...++..++.++..+++||++.= .+++..+.
T Consensus 157 ~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------------------------- 208 (1140)
T PRK06814 157 ILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLKIDR-------------------------- 208 (1140)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeecc--------------------------
Confidence 99999998887778899999966555555555555667766520 00000000
Q ss_pred CCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 014304 182 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL 261 (427)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~ 261 (427)
+..++....++.+.+.+......+.. +...+.+++...+.|......
T Consensus 209 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~------- 255 (1140)
T PRK06814 209 -----------------------NIIRSTITLLKYAKADKRIWLAILGI---SWFWLVGAVVLSQLPLLAKET------- 255 (1140)
T ss_pred -----------------------chHHHHHHHHHHHhcCchHHHHHHHH---HHHHHHHHHHHHHhHHHHHHH-------
Confidence 00000011233344333222221111 111222222323333222100
Q ss_pred ccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh--------------------c
Q 014304 262 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--------------------Q 321 (427)
Q Consensus 262 ~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~--------------------~ 321 (427)
.+.+............++.++|.++.+++.|+.++++.+..+.++.+++.+.+... .
T Consensus 256 ---~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1140)
T PRK06814 256 ---LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR 332 (1140)
T ss_pred ---cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc
Confidence 01111111222334456677888889999988776655444333332222211110 1
Q ss_pred chhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 322 SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
+.+......++..++........+.+..+..|.+.|+++.|+.+.++.++..+++.+.+.+...
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1121112222222333333445788999999999999999999999999999999888877643
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.6e-15 Score=144.72 Aligned_cols=318 Identities=14% Similarity=0.043 Sum_probs=167.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHh---hcch-----hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLS---SFSP-----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~---~~a~-----~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||+|||+.++......+++.... .+++ ....+++.|++.|++.+.. +....+..|..++ ++...+....
T Consensus 63 Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~ 140 (396)
T TIGR00882 63 DKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARM 140 (396)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhh
Confidence 59999999988766665443322 1222 2345677888999888765 4555566665433 2333344445
Q ss_pred HHHHhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhh-cccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccc
Q 014304 97 FWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL 175 (427)
Q Consensus 97 ~~~iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~-~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~ 175 (427)
..++|..+++.++..+. ..+||.+|.+.++.+++..+..+ ..||+|+. ++.+ + + .+ +
T Consensus 141 ~~~~g~~~g~~~~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~----~-~~-~---- 198 (396)
T TIGR00882 141 FGCVGWALCASIAGILF-SIDPQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVA----N----A-LG-A---- 198 (396)
T ss_pred hcccHHHHHHHHHhhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhh----c----c-cc-c----
Confidence 55666666666655443 46999999988877666544333 34554421 0000 0 0 00 0
Q ss_pred ccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc
Q 014304 176 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL-SSLD 254 (427)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l-~~~~ 254 (427)
++ +++ ...+..++++++..... ....+.....+.....+.+.. ....
T Consensus 199 --------~~------------------~~~---~~~~~~~~l~~~~~~~~---~l~~~~~~~~~~~~~~~~~~y~~~~~ 246 (396)
T TIGR00882 199 --------NA------------------SAF---SLKLALELFRQRKFWMF---VLYVVGVACVYDVFDQQFANFFTSFF 246 (396)
T ss_pred --------cc------------------CCC---CHHHHHHHHcCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 000 00123344443321111 111111222221111111111 1000
Q ss_pred cCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 014304 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGAR 334 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (427)
...+.+.........+..+...++....+++.||+|||+.+..+..+.++.........+.+.......+..
T Consensus 247 --------~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g 318 (396)
T TIGR00882 247 --------ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHA 318 (396)
T ss_pred --------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 000001111112223445566777788899999999999887766554443333222233332222222222
Q ss_pred HHHhhhhHhHHhhccccCccchhhHHHHH-HHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 014304 335 MCVMGAFTVSLIYAAEIYPTSVRSTGAGA-ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVM 407 (427)
Q Consensus 335 ~~~~~~~~~~~~~~~ElfPt~~R~~~~g~-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 407 (427)
.+..........+..|.+|++.|+++.+. .+....+|++++|.+.+++.+..+....+.+.+++.++..+...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 319 FEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 22222233456678899999999998877 46677899999999999998877655666666666655544443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.9e-15 Score=146.19 Aligned_cols=132 Identities=11% Similarity=0.038 Sum_probs=85.4
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+...++.++++++.||+|||+.+..+..+.++.........+.+.......+..............+.+|.+|++.|
T Consensus 270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 349 (420)
T PRK09528 270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLS 349 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccce
Confidence 34556678888999999999999987766655544433333333333222211111122222233456788999999999
Q ss_pred hHHHHH-HHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014304 358 STGAGA-ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 358 ~~~~g~-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
+++.+. .+..+.+|++++|.+.+++.+..+....+...+++.++..+..++.
T Consensus 350 a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 350 ATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred eeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Confidence 998776 4566789999999999999887665556666666665555444444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-15 Score=147.98 Aligned_cols=301 Identities=14% Similarity=0.007 Sum_probs=172.1
Q ss_pred hhhccchhh--hccchh-HHHHHHHHHHHHHHHhhcchh------HHHHHHHHHHhhhccccc-hhhhhhhhhcc-CCCc
Q 014304 18 FMFRLPHLW--QNLVRM-GFLGEALVTAGAGLLSSFSPN------YITLITLRCLVGVGLGSG-HVFLSWFLEFV-PPSN 86 (427)
Q Consensus 18 ~~~~~~~~~--~~GRk~-~l~~~~~~~~i~~~~~~~a~~------~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~-p~~~ 86 (427)
+++.++|=. |+|||| .++.+.....++.++..+.|+ ...+++.+++.|++.+.. ....++..|.. ++++
T Consensus 54 ~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 133 (437)
T TIGR00792 54 IMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE 133 (437)
T ss_pred hheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH
Confidence 344444421 589855 566677788888877776664 456778888888877654 33455667887 5689
Q ss_pred chhHHHHHHHHHHHhHhHHHHHHHHhc-------CCCChhHHHHhhhHHHHHHHHH-hhcccCcchhHhhcCchHHHHHH
Q 014304 87 RGMWMVIFSSFWTIGSVSEAIGAWIIM-------PRLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRA 158 (427)
Q Consensus 87 Rg~~~~~~~~~~~iG~~~~~~~~~~~~-------~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~k~r~~ea~~~ 158 (427)
|++..++.+.+..+|.++++.+...+. ...+||+.+.+.++.+++..+. .+.+||.|+. +.++
T Consensus 134 R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~-----~~~~---- 204 (437)
T TIGR00792 134 RESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE-----IPKN---- 204 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC-----CCcc----
Confidence 999999999888888776654432221 2468999998888777665443 4456665410 0000
Q ss_pred HHHHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHH
Q 014304 159 LEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSF 238 (427)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (427)
+ + ++ .+....++.+++.+..+..+.. .+....
T Consensus 205 --------------------------~-~-----------------~~-~~~~~~~~~l~~~~~~~~~~~~---~~~~~~ 236 (437)
T TIGR00792 205 --------------------------I-E-----------------KK-LSLKQIFKALFKNDQLLILCLA---YLFYNL 236 (437)
T ss_pred --------------------------c-c-----------------cC-CCHHHHHHHHhCCHHHHHHHHH---HHHHHH
Confidence 0 0 00 0001233444443332222211 112222
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 014304 239 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV 318 (427)
Q Consensus 239 ~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~ 318 (427)
.++....+.+...+.. .+ ..........+..+..+++..+.+++.||+|||+.+..+....++......
T Consensus 237 ~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 305 (437)
T TIGR00792 237 AFNIKNGVQVYYFTYV----------LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF 305 (437)
T ss_pred HHHHHcchhheeEeee----------cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 2222211112111100 01 111111122334566777888899999999999988776655544333333
Q ss_pred hhcch-hHHHHHHHHHHHHHhhhhHhHHhhccccCc-------cchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhc
Q 014304 319 TYQSN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYP-------TSVRSTGAGAANAMGRIGGMVCPLVAVALVANC 386 (427)
Q Consensus 319 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP-------t~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~ 386 (427)
...++ +.......+..++........+.+.+|..| .+.+++..|+.+....+++.+++.+.+.+.+..
T Consensus 306 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 306 FAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22222 222222222333333445667888888765 567889999999999999999999998887653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-14 Score=139.89 Aligned_cols=309 Identities=11% Similarity=-0.077 Sum_probs=172.9
Q ss_pred hhhhccchhHHHHHH-HHHHHHHH-HhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 014304 24 HLWQNLVRMGFLGEA-LVTAGAGL-LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 24 ~~~~~GRk~~l~~~~-~~~~i~~~-~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
..||+||++...... +...+..+ ....+++++.+++.|.++|.+.+.. +...++..|+ +++|++..+......++
T Consensus 62 l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~sl 139 (382)
T TIGR00902 62 LIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSA 139 (382)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHH
Confidence 346899854432221 12222222 3446789999999999999887664 5555555565 46778888888888889
Q ss_pred hHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccc
Q 014304 101 GSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 180 (427)
Q Consensus 101 G~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~ 180 (427)
|.++++++...+....|||..+.+.++...+... .+.++|+|+ +++.++
T Consensus 140 G~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~----~~~~~~-------------------------- 188 (382)
T TIGR00902 140 AFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIP----PKDAIP-------------------------- 188 (382)
T ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCC----CCcccc--------------------------
Confidence 9999888777777778999998876544322222 233344321 000000
Q ss_pred cCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 014304 181 TLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP 260 (427)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~ 260 (427)
+ + +.++ ...++++++++......+...+ ....++....+.+......
T Consensus 189 ----~-~---------------~~~~----~~~~~~~l~~~~~~~~l~~~~l---~~~~~~~~~~~~~~~l~~~------ 235 (382)
T TIGR00902 189 ----E-D---------------ESQG----DSAFIALLKNPMNLRFLAAVCL---IQGAHAAYYGFSAIYWQAA------ 235 (382)
T ss_pred ----c-c---------------cccc----chhHHHHHcChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC------
Confidence 0 0 0000 0122334433222222111111 1122222222222221110
Q ss_pred CccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhh
Q 014304 261 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGA 340 (427)
Q Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (427)
+.+.........+..+.++++..+.+.+.||+|+|+++..+.....+.........+.+.....-.+..+.....
T Consensus 236 -----g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~ 310 (382)
T TIGR00902 236 -----GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVC 310 (382)
T ss_pred -----CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 111111112233456677778888999999999999988777766655544443333232222222222222334
Q ss_pred hHhHHhhccccCccchhhHHHHHHHHHh-hHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 014304 341 FTVSLIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILS 405 (427)
Q Consensus 341 ~~~~~~~~~ElfPt~~R~~~~g~~~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 405 (427)
+.....|+.+. |++.|+++.++.+... .+|..++|.+.+++.+..+. ..+...+++.+++.+.
T Consensus 311 ~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 311 HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 45566777888 9999999999977544 58899999999999888753 4566666666555433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-14 Score=137.14 Aligned_cols=304 Identities=9% Similarity=-0.078 Sum_probs=159.4
Q ss_pred hhhccch----hHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHH
Q 014304 25 LWQNLVR----MGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 25 ~~~~GRk----~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
.||+||| +.+.+..++. .......++|++.+++.|++.|++.+.. +...++..++ +++|++..+.......
T Consensus 63 ~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~ 138 (382)
T PRK11128 63 VKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGS 138 (382)
T ss_pred HhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHH
Confidence 4799984 2222222221 2223345688999999999999987765 4444555555 3446666666777778
Q ss_pred HhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccccccc
Q 014304 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179 (427)
Q Consensus 100 iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~ 179 (427)
+|..++++++..+....|||..|++.++..++..+...+.||.++ +++.++
T Consensus 139 lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------------- 189 (382)
T PRK11128 139 IAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP----QGESRQ------------------------- 189 (382)
T ss_pred HHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----cccccc-------------------------
Confidence 888888888877777789999998777544433333334444321 000000
Q ss_pred ccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 014304 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
+. ++. ...++++++++..........+. ...+.+...+.+......
T Consensus 190 ----~~-------------------~~~---~~~~~~i~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~----- 235 (382)
T PRK11128 190 ----QE-------------------SAG---WPAWKALLKEPTVWRFLLCVSLL---QGSHAAYYGFSAIYWQAA----- 235 (382)
T ss_pred ----cc-------------------ccc---cchHHHHHcChhHHHHHHHHHHH---HHHhHhHHHHHHHHHHHC-----
Confidence 00 000 01233444433222221111111 111111111112111100
Q ss_pred CCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhh
Q 014304 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG 339 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (427)
+.+.........+..+..++...+.+++.||+|+|+.+..+....++..+.+....+.+......++..++...
T Consensus 236 ------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 309 (382)
T PRK11128 236 ------GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTV 309 (382)
T ss_pred ------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 01111111122244556677778889999999999988776666555444333323333222222222222222
Q ss_pred hhHhHHhhccccCccchhhHHHHHHHHHh-hHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 014304 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSI 403 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~ 403 (427)
.......+..+. |++.+++..++.+..+ .+|..++|.+.+.+.+..+. ..++..+.+.+++.
T Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 310 CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 234445566676 4445688888877554 45668899999988887653 34444454444443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-14 Score=143.08 Aligned_cols=136 Identities=16% Similarity=0.015 Sum_probs=104.2
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhcc------hhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHH
Q 014304 25 LWQNLVRMGFLGEALVTAGAGLLSSFS------PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSF 97 (427)
Q Consensus 25 ~~~~GRk~~l~~~~~~~~i~~~~~~~a------~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~ 97 (427)
.||+|||+++.++.++++++.++.+++ ++++++++.|++.|+|.+.. +.....+.+++| ++||++.++...+
T Consensus 85 ~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~ 163 (591)
T PTZ00207 85 YDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTF 163 (591)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHH
Confidence 369999999999999999999999987 68999999999999998765 445556679987 6799999999999
Q ss_pred HHHhHhHHH-HHHHHhcCCCChhHHHHhhhHHHHHHHHH---hhcccCcchhHhhcCchHHHHHHHHHHH
Q 014304 98 WTIGSVSEA-IGAWIIMPRLDWRWLLGLSSIPSFILLAF---LGFQPESPRYLCLKGRTAEAHRALEKIA 163 (427)
Q Consensus 98 ~~iG~~~~~-~~~~~~~~~~~WR~~~~~~~i~~~i~~~~---~~~lpESP~~L~~k~r~~ea~~~l~~~~ 163 (427)
.++|..+.+ +...+.. .+|+..+++.++.+++..+. ....||+|+|...++|.+|+++..+++.
T Consensus 164 ~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~ 231 (591)
T PTZ00207 164 TGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMR 231 (591)
T ss_pred HHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhh
Confidence 999997544 3333332 47888777766655443222 2357899999877777777666655543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.9e-14 Score=140.09 Aligned_cols=336 Identities=18% Similarity=0.153 Sum_probs=184.9
Q ss_pred hhhhccchhhhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHH
Q 014304 17 IFMFRLPHLWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 17 ~~~~~~~~~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~ 96 (427)
.+.++++| .+|||..++.+.++..+|++.++-++|..+++.+-.+.|+|.|........+.|..|.|.|+....+...
T Consensus 96 ~~~G~LSD--lfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~ 173 (599)
T PF06609_consen 96 PFVGRLSD--LFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASI 173 (599)
T ss_pred HhhHHHHH--HhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHH
Confidence 45667776 6999999999999999999999999999999999999999988765444446899999999876666555
Q ss_pred HHHHhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHH--HHhhcccCcchhHhhcCchHHHHHHHHHHH---h-------
Q 014304 97 FWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL--AFLGFQPESPRYLCLKGRTAEAHRALEKIA---Q------- 164 (427)
Q Consensus 97 ~~~iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~--~~~~~lpESP~~L~~k~r~~ea~~~l~~~~---~------- 164 (427)
...+....++.++..+..+.+|||.+++.++...+.+ .+.++-|.+ +-..+++...-++.++|+- -
T Consensus 174 ~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~--~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl 251 (599)
T PF06609_consen 174 PFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP--RAQLHGRKLSKREQLKELDWIGIFLFIAGL 251 (599)
T ss_pred HHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc--hhhhccccCcHHHHHHHhhHHHHHHHHHHH
Confidence 4444443445555445556799999998877655533 233445533 3222322211122233321 0
Q ss_pred -------hcCCCCCCcccccccccCCCCCCCCccchhccccC--------CCCCccCCCchhhHHHHhcCcchhhHHHHH
Q 014304 165 -------VNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN--------GGNKTTEGKSGLSLFLMLFSSKLARTTILL 229 (427)
Q Consensus 165 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 229 (427)
..+...+ +...+..-........ -|.. ...++.+.+ .++|+. +|...+.
T Consensus 252 ~LfLlgl~wgG~~~------------~~W~Sa~VIa~lviG~~~Lv~F~~wE~~-~~~~~Pl~P-~~Lf~~--~r~~~~~ 315 (599)
T PF06609_consen 252 ALFLLGLSWGGYPY------------YPWKSAHVIAPLVIGFVLLVAFVVWEWF-GAPKDPLFP-HRLFKD--RRGFAAL 315 (599)
T ss_pred HHHHHHHhccCCCC------------CCCCCccchhhHHHHHHHHHHHHHhhhh-ccCCCCcCC-HHHhcc--chHHHHH
Confidence 0000000 0000000000000000 0000 000111111 234432 1223333
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHH-HHHH
Q 014304 230 WLLLFGNSFAYYAVVL-LISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI-TIMF 307 (427)
Q Consensus 230 ~~~~~~~~~~~y~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~-~~~~ 307 (427)
.+..+...+.||+... |..+...-.+. ...............+++...|.++.+.+..+++|-+.. +.+.
T Consensus 316 lvi~fi~G~~~~s~~~l~p~~~~~vf~~--------d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~ 387 (599)
T PF06609_consen 316 LVISFISGMNFFSVNILWPQQVVNVFGS--------DPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGS 387 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccC--------CCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHH
Confidence 3344444555676654 44433211000 000000111112233455566778888888888875544 4544
Q ss_pred HHHHHHHHHHHhh--cchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHH
Q 014304 308 TLSCLFLLPLVTY--QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 380 (427)
Q Consensus 308 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~ 380 (427)
.....++.+++.. ++........++..++..+.-.+..+...-..|++.-+++.|+..++-.+||.++.-++.
T Consensus 388 ~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 388 VLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred HHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444333344332 222223344455555555555667888888899999999999999988888877765543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-13 Score=136.43 Aligned_cols=106 Identities=14% Similarity=0.009 Sum_probs=91.7
Q ss_pred hh-ccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCc---chhHHHHHHHHHHH
Q 014304 26 WQ-NLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN---RGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~-~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~i 100 (427)
|| +|||+++.++.++++++.++.++++++..++++|++.|+|.|.. +...++.+|+.|+++ |+...++.+...++
T Consensus 73 Dr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~ni 152 (475)
T TIGR00924 73 DRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINI 152 (475)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHH
Confidence 68 89999999999999999999999999999999999999999876 566677889998764 88888999999999
Q ss_pred hHhHHHHHHHHhcCCCChhHHHHhhhHHHHH
Q 014304 101 GSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI 131 (427)
Q Consensus 101 G~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i 131 (427)
|..+++.+...+....+||+.|.+.++..++
T Consensus 153 G~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~ 183 (475)
T TIGR00924 153 GSFISPLLAGVIAENYGYHVGFNLAAVGMVI 183 (475)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 9999988877776667999999887754433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-13 Score=130.50 Aligned_cols=309 Identities=12% Similarity=-0.022 Sum_probs=162.3
Q ss_pred hhccchhHHHHHHHHH-HHHHHHhh---cchh-HHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVT-AGAGLLSS---FSPN-YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~-~i~~~~~~---~a~~-~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
||+||||..++.+.+. .......+ ...+ ...+...-++.++..... +..-.+..|..++++|+...+....+..
T Consensus 64 ~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~ 143 (390)
T TIGR02718 64 WRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVM 143 (390)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHH
Confidence 4789999875555332 21122222 2222 223344434433333332 4455567899999999998888888889
Q ss_pred HhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccccccc
Q 014304 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179 (427)
Q Consensus 100 iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~ 179 (427)
+|.+++......+....|||..|++.++..++..+...+++|.++ ++.++.+
T Consensus 144 lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~-----~~~~~~~----------------------- 195 (390)
T TIGR02718 144 IGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAV-----ASPEAPL----------------------- 195 (390)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc-----Cccccch-----------------------
Confidence 999988876666666789999999888776655444444433221 0000000
Q ss_pred ccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 014304 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
+ ....++++++++..+..+....+.......+|+.. .+.+.+.
T Consensus 196 --------------------------~---~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~l~~~------ 238 (390)
T TIGR02718 196 --------------------------A---RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLS--KLYLVDA------ 238 (390)
T ss_pred --------------------------h---hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHh--hHHHHhc------
Confidence 0 00122334443333333332222222222222211 1222110
Q ss_pred CCccCCCCCChhHHHHHHHHH-hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHH-HHHHHhhc----chhHHHHHH-HH
Q 014304 260 PLMFSHHPQDANLYIDEFITS-LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLF-LLPLVTYQ----SNILTTGLL-FG 332 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~-~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~-~~ 332 (427)
+.+...........+ ...+.+.++.+++.||+|+|+.+..+....... ........ ......... ..
T Consensus 239 ------G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (390)
T TIGR02718 239 ------GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAF 312 (390)
T ss_pred ------CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHH
Confidence 111111111111122 344566788999999999999887665444221 21111111 111111111 11
Q ss_pred HHHHHhhhhHhHHhhccccCcc-chhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 014304 333 ARMCVMGAFTVSLIYAAEIYPT-SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILS 405 (427)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ElfPt-~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 405 (427)
..++........+....+..++ +.|++..++.++...+++.++|.+.+.+.+..+....+...+.+.+++.+.
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 313 GSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 1111222334455555566665 899999999999999999999999998888766545555555555555433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-15 Score=146.20 Aligned_cols=119 Identities=20% Similarity=0.201 Sum_probs=103.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
|||-||.++.++..+|.++.++++++..|+++.++|.+.|+|+... +++.+.+++.+|...|+++.++++...++|..+
T Consensus 93 dryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl 172 (493)
T KOG1330|consen 93 DRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL 172 (493)
T ss_pred hhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce
Confidence 6999999999999999999999999999999999999999999876 778889999999999999999999999999988
Q ss_pred HHHHHHHhcCCCC-hhHHHHhhhHHHHHHHHHh-hcccCcch
Q 014304 105 EAIGAWIIMPRLD-WRWLLGLSSIPSFILLAFL-GFQPESPR 144 (427)
Q Consensus 105 ~~~~~~~~~~~~~-WR~~~~~~~i~~~i~~~~~-~~lpESP~ 144 (427)
+.+.+..+....+ ||+.|...++.+++..++. ++.+|-+|
T Consensus 173 G~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 173 GYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred eEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 8777666555444 9999999999888765554 45555443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-14 Score=130.78 Aligned_cols=117 Identities=18% Similarity=0.058 Sum_probs=92.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHHHHHhHhHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~ 105 (427)
||||||++++.+++..+++-++-+++.|+..+++.|++.|+..|...+..++++|+.++++|+..++.+...+++|.+++
T Consensus 93 D~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilG 172 (451)
T KOG2615|consen 93 DRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILG 172 (451)
T ss_pred hhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhc
Confidence 38999999999999999999999999999777777999999999888888999999999999999999999999999999
Q ss_pred HHHHHHhcC---CCC--hhH-HHHhhhHHHHH-HHHHhhcccCc
Q 014304 106 AIGAWIIMP---RLD--WRW-LLGLSSIPSFI-LLAFLGFQPES 142 (427)
Q Consensus 106 ~~~~~~~~~---~~~--WR~-~~~~~~i~~~i-~~~~~~~lpES 142 (427)
+.++.++.. ..+ |-. +-++..+.... ...+.+++||+
T Consensus 173 PmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 173 PMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred chhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 887665432 111 111 12222233322 34446789999
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.6e-13 Score=133.03 Aligned_cols=324 Identities=17% Similarity=0.023 Sum_probs=191.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSF-----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT 99 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~-----a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 99 (427)
||+.||+.++.+-++..+..+..++ ..+.+.+++.-|+.|++.... |+-.+.+-|++|+++-..++++.+...+
T Consensus 70 Dr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~n 149 (524)
T PF05977_consen 70 DRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFN 149 (524)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence 6999999999998887766554443 246788999999999998875 5667788899999999999999999999
Q ss_pred HhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccccccc
Q 014304 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 179 (427)
Q Consensus 100 iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~ 179 (427)
+..++++.++..+....|=...|.+.++.-++.+......+..++ +++ .+++++
T Consensus 150 iar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~~------------------~~~e~~---- 203 (524)
T PF05977_consen 150 IARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----PSS------------------LPRERF---- 203 (524)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----ccc------------------cchhhh----
Confidence 888888877776655566677777776543333222222111100 000 000000
Q ss_pred ccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 014304 180 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 259 (427)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 259 (427)
.+.-...++...+.+..+..+....+.......++ ..+|.+...
T Consensus 204 ---------------------------~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~---aLlPl~a~~------ 247 (524)
T PF05977_consen 204 ---------------------------FSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVW---ALLPLFARD------ 247 (524)
T ss_pred ---------------------------hhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHH---HhhhHHHHH------
Confidence 00000133333433333333322222111111122 223332210
Q ss_pred CCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhh
Q 014304 260 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG 339 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (427)
..+.+...........+++.+.|.++...+.+|.++++++..+.+..++..+.+....+.+.....+++..++...
T Consensus 248 ----~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~ 323 (524)
T PF05977_consen 248 ----VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWII 323 (524)
T ss_pred ----HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 0011111112223344566677777777777788887877766666665555555444444433444444444444
Q ss_pred hhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc-cccCCC
Q 014304 340 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI-PFETKG 415 (427)
Q Consensus 340 ~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l-~pEtk~ 415 (427)
.........-+.-|.++||+..++..++...+..++..+.+.+.+..+....+.+-++..+++.++.... .|+.+.
T Consensus 324 ~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~ 400 (524)
T PF05977_consen 324 ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE 400 (524)
T ss_pred HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 4556677888999999999999999998888888888888888887776555555555444554444433 234443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-13 Score=135.17 Aligned_cols=102 Identities=17% Similarity=0.059 Sum_probs=87.6
Q ss_pred hh-ccchhHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHhhhccccc-hhhhhhhhhccCCCc--chhHHHHHHHHHHH
Q 014304 26 WQ-NLVRMGFLGEALVTAGAGLLSSFSPNYIT-LITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~-~GRk~~l~~~~~~~~i~~~~~~~a~~~~~-l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~i 100 (427)
|| +|||++++++.+++.++++..+++++... ++++|.++|+|.|.. +...+++.|..|+++ |+...+++...+++
T Consensus 75 Dr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ni 154 (489)
T PRK10207 75 DHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINI 154 (489)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHH
Confidence 58 99999999999999999999999877554 558999999999986 556778899998874 57778889999999
Q ss_pred hHhHHHHHHHHhcCCCChhHHHHhhhH
Q 014304 101 GSVSEAIGAWIIMPRLDWRWLLGLSSI 127 (427)
Q Consensus 101 G~~~~~~~~~~~~~~~~WR~~~~~~~i 127 (427)
|..+++.++.++....|||+.|++.++
T Consensus 155 g~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 155 GSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 999998888877777899999988654
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-11 Score=123.83 Aligned_cols=146 Identities=19% Similarity=0.177 Sum_probs=100.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhhChh--HHHHHHHHHHHH-HHHHHH-h------hcchhHHHHHHHHHHHHHhhhh
Q 014304 272 LYIDEFITSLAEIPGLLLAAILVDTAGRK--LSITIMFTLSCL-FLLPLV-T------YQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 272 ~~~~~~i~~~~~~~g~~~~~~l~d~~GRR--~~~~~~~~~~~~-~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
.....++..+.+++|.++.+++.||+|-| +.+..+.....+ .+..+. . ..+.+.....-.....+..+..
T Consensus 319 l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~q 398 (477)
T PF11700_consen 319 LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQ 398 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHH
Confidence 34455677888999999999999999999 666555444322 222222 0 1223322233333344556667
Q ss_pred HhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhhccccCCCCcc
Q 014304 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKGQEL 418 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l 418 (427)
+..-.+.+|+-|+...+.-+|+-...++..++++|.+.+.+.+..+ ....+....++.+++.++. ...++.|++..
T Consensus 399 s~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~~ 475 (477)
T PF11700_consen 399 SASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRED 475 (477)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhhc
Confidence 8899999999999999999999999999999999999998887766 3444555555555554444 45567777653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-12 Score=130.79 Aligned_cols=106 Identities=15% Similarity=0.043 Sum_probs=86.5
Q ss_pred hh-ccchhHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCc--chhHHHHHHHHHHH
Q 014304 26 WQ-NLVRMGFLGEALVTAGAGLLSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~-~GRk~~l~~~~~~~~i~~~~~~~a~-~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~i 100 (427)
|| +|||+++.++.++..++..+.++++ +...++++|+++|+|.|.. +...+++.|+.|+++ |+...++++.+.++
T Consensus 82 Dr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i 161 (500)
T PRK09584 82 DKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI 161 (500)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH
Confidence 69 5999999999999999999888874 5667889999999999875 455677889998754 44567788889999
Q ss_pred hHhHHHHHHHHhcCCCChhHHHHhhhHHHHH
Q 014304 101 GSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI 131 (427)
Q Consensus 101 G~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i 131 (427)
|..+++.+...+....|||+.|++.++..++
T Consensus 162 G~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 162 GSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 9999988887777778999999987754443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=131.93 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=99.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHHHHHhHhHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~ 105 (427)
||+|-|+++.++++.+++.+++.+++.++..+.+.|++.|++.|...+...|+..++|+++|+++.++...+..+|.+++
T Consensus 87 DrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia 166 (511)
T TIGR00806 87 DYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLS 166 (511)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999887667788999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHH---hhhHHHHHHHHHhhcccCcch
Q 014304 106 AIGAWIIMPRLDWRWLLG---LSSIPSFILLAFLGFQPESPR 144 (427)
Q Consensus 106 ~~~~~~~~~~~~WR~~~~---~~~i~~~i~~~~~~~lpESP~ 144 (427)
++++.+ ...+|||...- +....-.+.++.-+++|--+|
T Consensus 167 ~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 167 SVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 888776 44579998643 333333344555567884444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-12 Score=131.33 Aligned_cols=359 Identities=17% Similarity=0.101 Sum_probs=198.8
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHhhcchhHHHHHH-HHHHhhhccccch-hhhhhhhhccCCCcchhHHHHHHHHHHHh
Q 014304 24 HLWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLIT-LRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 24 ~~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v-~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
.++|+|.|++.+...++..++-+++.|+.+++++++ .=++.|+|.|..+ .+...+..| -+|+|+.++++...+.++|
T Consensus 104 l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~Y-F~kkR~lA~Gia~~GsG~G 182 (509)
T KOG2504|consen 104 LCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTY-FEKKRALATGIAVSGTGVG 182 (509)
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhH-hHHHHHHHHhhhhccCCcc
Confidence 347999999999999999999999999999977655 5578888888764 334444444 4566999999999999999
Q ss_pred HhHHHHHHHHhcCCCChhHHHHhhhHHHHHHH-HHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccc
Q 014304 102 SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 180 (427)
Q Consensus 102 ~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~ 180 (427)
.++-+.+.-.+....|||..++..+...+-.. ......|.+|+-. + + ++++ .+. .....+. .+...+.+
T Consensus 183 ~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~--~-~-~~~~--~~~-~~~~~~~---~~~~~~~~ 252 (509)
T KOG2504|consen 183 TVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK--P-N-EEKD--LRN-SAASVES---TPKPVELR 252 (509)
T ss_pred eeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC--c-h-hhhh--hcc-ccccccc---cccccccc
Confidence 98877776666777899998876665543332 3234456555421 1 1 1111 111 0000000 00000000
Q ss_pred cCCCCCCCCc---cchhccccCCCCCcc--CCCchhh-HHHHhcCcchhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcc
Q 014304 181 TLPTGERAPP---ELVHLLSSNGGNKTT--EGKSGLS-LFLMLFSSKLARTTILLWLL-LFGNSFAYYAVVLLISELSSL 253 (427)
Q Consensus 181 ~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~-~~~~l~~~~~~~~~~~~~~~-~~~~~~~~y~~~~~~~~l~~~ 253 (427)
.+.++..... +.....++.+ ++.+ ..+.... .-.++++. ++.+.+.+ .....+.++....+++.....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~ll~~----~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~ 327 (509)
T KOG2504|consen 253 ISERDSGLKKLSLSNLATLKRGP-DKWRNSPLQAFLSMLDLSLLKD----PKFLLLALSNLFAYLGFNVPFVYLPSYAKS 327 (509)
T ss_pred cccCCCCCCcccccchhhhhhCC-ccccccchhhhhhhhhHHHHcC----chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000000000 0000000000 0000 1111000 00123322 22222222 122334444444444433321
Q ss_pred ccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhCh--hHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 014304 254 DTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR--KLSITIMFTLSCLFLLPLVTYQSNILTTGLLF 331 (427)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GR--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (427)
. +.++........+.+..++.|-++.|++.|+... +.....+.+++++.........+.+ ......
T Consensus 328 ~-----------g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~-~l~~~~ 395 (509)
T KOG2504|consen 328 L-----------GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYV-GLIVFS 395 (509)
T ss_pred c-----------CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHH
Confidence 1 1122222233345577888999999999999873 3444555666655553333322222 222222
Q ss_pred H-HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhhc
Q 014304 332 G-ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 332 ~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~l 409 (427)
+ ..++.....+....+..|+.+++.=+.+.|+...+.-++..++|-+.+++.+..+ ....+...+.+.++++++.++.
T Consensus 396 ~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 396 ILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence 2 2233333344566899999999999999999999999999999988887776655 3345566667777776666555
Q ss_pred c
Q 014304 410 P 410 (427)
Q Consensus 410 ~ 410 (427)
+
T Consensus 476 ~ 476 (509)
T KOG2504|consen 476 R 476 (509)
T ss_pred H
Confidence 3
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.8e-13 Score=132.31 Aligned_cols=310 Identities=12% Similarity=0.023 Sum_probs=165.9
Q ss_pred hhcc-----chhHHHHHHHHHH-HHHHHhhcchhHHHHHH-HHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHH
Q 014304 26 WQNL-----VRMGFLGEALVTA-GAGLLSSFSPNYITLIT-LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSF 97 (427)
Q Consensus 26 ~~~G-----Rk~~l~~~~~~~~-i~~~~~~~a~~~~~l~v-~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~ 97 (427)
|+++ ||+-++++.++.+ +.....+..++...+.+ .+++.+++.+.. .+.-.++.|..+ ++++...+.....
T Consensus 85 D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~ 163 (468)
T TIGR00788 85 DTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWM 163 (468)
T ss_pred HhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHH
Confidence 5666 7777777776663 43334444466555554 888999987765 556678899998 5554433333333
Q ss_pred H---HHhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcc
Q 014304 98 W---TIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGK 174 (427)
Q Consensus 98 ~---~iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~ 174 (427)
| .+|.++++.++..+....+||..|++.+...++......++||.+.....+.+ ++........
T Consensus 164 ~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~-~~~~~~~~~~------------ 230 (468)
T TIGR00788 164 WGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIG-TYLEMNMALL------------ 230 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccccccccccc-ccchhhhhhh------------
Confidence 3 47888888887777667799999988877766665556677886421100000 0000000000
Q ss_pred cccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014304 175 LVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD 254 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 254 (427)
.. ...+ ..++........++++.....++..++ . |. ..+...+..
T Consensus 231 --------------~~---~~~~--------~~~~~~~~l~~~l~~~~i~~~l~fifl---~---~~----~~~~~~~~~ 275 (468)
T TIGR00788 231 --------------TL---GVLA--------NVKVQILGLRGAIQLLEIAKPLIFIFL---S---YA----NLPGASGSV 275 (468)
T ss_pred --------------hh---hHHH--------HHHHHHHHHHHHHhcHHHHHHHHHHHH---H---Hh----hcCCCCcee
Confidence 00 0000 000001122222322221111111111 0 00 001000000
Q ss_pred cCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh--hc-------chh-
Q 014304 255 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQ-------SNI- 324 (427)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~--~~-------~~~- 324 (427)
-. ..+ ...+.+.........+.+++.+++..+.+.+.+|++.|+.+..+.++.++....... .. ++.
T Consensus 276 f~-~~~--~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~ 352 (468)
T TIGR00788 276 FC-ATT--QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEV 352 (468)
T ss_pred EE-EEc--ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCee
Confidence 00 000 011222222333444556777888888888889999999888777665544322110 00 111
Q ss_pred HHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc
Q 014304 325 LTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~ 387 (427)
.......+..+.....+.....+..|+-|++.+++.+++.+++.++|+.+++.+.+.+.+..+
T Consensus 353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred eeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111111222222333445678999999999999999999999999999999988777776544
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=137.73 Aligned_cols=138 Identities=12% Similarity=-0.039 Sum_probs=100.0
Q ss_pred hhccchhHHHHHHHHHHHHHH---HhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHH-HHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGL---LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI-FSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~---~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~i 100 (427)
||+|||+.+..+.++..++++ ....+++..+++++|++.|++.+.. .....+..|++|++.||...++ .+.+...
T Consensus 311 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~ 390 (490)
T PRK10642 311 DRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLV 390 (490)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHH
Confidence 699999998887765444332 2233556788899999999887654 3455667899999999987775 5555555
Q ss_pred hHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhc-----CchHHHHHHHHHHH
Q 014304 101 GSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLK-----GRTAEAHRALEKIA 163 (427)
Q Consensus 101 G~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k-----~r~~ea~~~l~~~~ 163 (427)
|.+...+..+......+|+.++.+..+++++.++..+++||||+|+.+| ||.|||+++++|++
T Consensus 391 g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 391 AGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 5443333344333334688887777777777766667789999999865 99999999999885
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-11 Score=112.46 Aligned_cols=274 Identities=12% Similarity=0.082 Sum_probs=155.8
Q ss_pred cchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhHHHHHHHHhcC--------------
Q 014304 50 FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-------------- 114 (427)
Q Consensus 50 ~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~~~~~~~~~~-------------- 114 (427)
...+|..++++-|+.|.|.+.. .++.+|+....|++++.+.+++.+.++.+|.++++.++..+..
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 4568999999999999999986 5778999999999999999999999999999999988665431
Q ss_pred --CCChhHHHHhhhHHHHHHHHHh--hcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCc
Q 014304 115 --RLDWRWLLGLSSIPSFILLAFL--GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP 190 (427)
Q Consensus 115 --~~~WR~~~~~~~i~~~i~~~~~--~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (427)
..+||++++..+...++..+.+ ..+||... +|.+ + .+ + +
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~--------~~~~----~---~~------------------~-~--- 128 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE--------ADVA----R---VS------------------S-G--- 128 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc--------cccc----c---cc------------------c-c---
Confidence 1479999885554433333222 23455311 0000 0 00 0 0
Q ss_pred cchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccCCCCCCh
Q 014304 191 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 270 (427)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 270 (427)
++.++ +.+++.+...--.+..+.+.+...+ ...|.+....... ..+......
T Consensus 129 -----------~~~~~--------~~~~~~~~~~l~~~~~f~yvg~e~~---~~~w~~~yl~~~~------~~g~s~~~a 180 (310)
T TIGR01272 129 -----------DTTQK--------TSAFQFTHLVLGALGIFVYVGAEVS---AGSFLVNFLSDPH------ALGLPEDQA 180 (310)
T ss_pred -----------cccch--------hhHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcc------cCCCCHHHH
Confidence 00000 0011111101011111122222222 2222222211000 000011111
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccc
Q 014304 271 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAE 350 (427)
Q Consensus 271 ~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 350 (427)
. ...........+|.++++++.||+|+|+.+..+..++++..+...... ............++....++.......+
T Consensus 181 ~--~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~-~~~~~~~~~l~g~~~s~i~P~~~s~a~~ 257 (310)
T TIGR01272 181 A--HFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTH-GYVAMWFVLALGLFNSIMFPTIFSLALN 257 (310)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 123334556678889999999999999887766655554443332222 2222223333445556667777888889
Q ss_pred cCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHH
Q 014304 351 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVV 393 (427)
Q Consensus 351 lfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~ 393 (427)
.+|.+ .+++.++. .++.+|+.+.|.+.+.+.+..+...++.
T Consensus 258 ~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 258 ALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred hhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 88876 34566664 6788999999999998888666444443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-11 Score=118.37 Aligned_cols=338 Identities=14% Similarity=0.039 Sum_probs=172.3
Q ss_pred hccchhHHHHH-HHHHHHHHHHhhcchhHHHHH------------HHHHHhhh-----ccccc-hhhhhhhhhccCCCcc
Q 014304 27 QNLVRMGFLGE-ALVTAGAGLLSSFSPNYITLI------------TLRCLVGV-----GLGSG-HVFLSWFLEFVPPSNR 87 (427)
Q Consensus 27 ~~GRk~~l~~~-~~~~~i~~~~~~~a~~~~~l~------------v~R~l~G~-----g~G~~-~~~~~~~~E~~p~~~R 87 (427)
|+|||+.+++. .....++-++.+++++...+. +.+++.|+ +.+.. ....+++.|.+|+++|
T Consensus 69 r~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~ 148 (477)
T TIGR01301 69 RFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR 148 (477)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH
Confidence 69999999885 555555556666776654221 23445554 33433 2345678899999865
Q ss_pred --hhHHHHHHHHHHHhHhHHHHHHHHh--c---C----C------CChhHHHHhhhHHHHHH-HHHhhcccCcchhHhhc
Q 014304 88 --GMWMVIFSSFWTIGSVSEAIGAWII--M---P----R------LDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLK 149 (427)
Q Consensus 88 --g~~~~~~~~~~~iG~~~~~~~~~~~--~---~----~------~~WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~k 149 (427)
+.+.++.+.+.++|.++++.++.+. . + . .+-|..|++.++..++. ++..+..+|.|... .
T Consensus 149 ~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~ 226 (477)
T TIGR01301 149 RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--S 226 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--c
Confidence 5788888999999999888776542 0 1 0 15688899888766554 44466789987411 1
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcC-cchhhHHHH
Q 014304 150 GRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTIL 228 (427)
Q Consensus 150 ~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 228 (427)
++.++ ++ .++.++ .++.+.....++.+.+ |+..++.
T Consensus 227 ~~~~~-----~~---------------------~~~~~~---------------~~~~~~~~~i~~~~~~mP~~m~~l-- 263 (477)
T TIGR01301 227 DDFIN-----SE---------------------AAPPSK---------------HGEEAFFGELFGAFKYLPRPVWIL-- 263 (477)
T ss_pred ccchh-----hh---------------------cccccc---------------cchhhhHHHHHHHHHHCCHHHHHH--
Confidence 00000 00 000000 0000000012223332 3333332
Q ss_pred HHHHHHHHHHHHHHHHHHHH-Hhhc--cccCCCCCCccCCCCCCh---hHHHHHHHHHhhhhhHHHHHHHHHhhhCh-hH
Q 014304 229 LWLLLFGNSFAYYAVVLLIS-ELSS--LDTRCRSPLMFSHHPQDA---NLYIDEFITSLAEIPGLLLAAILVDTAGR-KL 301 (427)
Q Consensus 229 ~~~~~~~~~~~~y~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~g~~~~~~l~d~~GR-R~ 301 (427)
+...+...+.++...++.+ .+.. +.+. +. ......+. .. ....+.++...+.+++--.+.+|+|+ |.
T Consensus 264 -~~vqffsW~a~f~~~~y~T~~vg~~v~~~~---~~-~~~~y~~gvr~G~-~~l~~~s~~~~i~s~~l~~l~~~~g~~k~ 337 (477)
T TIGR01301 264 -LLVTCLNWIAWFPFILFDTDWMGREVYGGS---VN-QGAKYDDGVRAGA-FGLMLNSVVLGITSIGMEKLCRGWGAGKR 337 (477)
T ss_pred -HHHHHHHHHHHHHHHHhccHHHHHHHcCCC---Cc-chhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 2222222222222222211 1110 0000 00 00000001 00 11223333333444555667788884 66
Q ss_pred HHHHHHHHHHHHHHHHHh-hc--c---h---------------hHHHHHHHHHHHHHhhhhHhHHhhccccCccchh--h
Q 014304 302 SITIMFTLSCLFLLPLVT-YQ--S---N---------------ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR--S 358 (427)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~-~~--~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R--~ 358 (427)
.+..+.++.++++....+ .. + . +..........+.....++++|+..+|.-|++-| |
T Consensus 338 ~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G 417 (477)
T TIGR01301 338 LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQG 417 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCc
Confidence 767775555444443321 11 0 0 1112222222233344567899999999996555 7
Q ss_pred HHHHHHHHHhhHhHhHHHHHHHHHHhhcc-h-hHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 359 TGAGAANAMGRIGGMVCPLVAVALVANCH-Q-MTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 359 ~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~-~~~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
.-+|+-|.+-.+.-++.....+.+.+..+ . ...+.+=++..++++++++++.|.++.
T Consensus 418 ~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 418 LSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 77788888877777776665555444433 2 233444456667888888888888764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=135.56 Aligned_cols=117 Identities=12% Similarity=0.110 Sum_probs=95.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcch---------------------------------------------------hH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSP---------------------------------------------------NY 54 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~---------------------------------------------------~~ 54 (427)
||+|||+.+.++++++++++++.++.+ .+
T Consensus 93 ~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (633)
T TIGR00805 93 TKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMW 172 (633)
T ss_pred cccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCcee
Confidence 799999999999999999999887753 25
Q ss_pred HHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhHHHHHHHHhcCCC-----------------
Q 014304 55 ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL----------------- 116 (427)
Q Consensus 55 ~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~~~~~~~~~~~~----------------- 116 (427)
.+++++|+++|+|.+.. +...+|+.|+.|+++|+++.++.+....+|..++++++..+...+
T Consensus 173 ~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~d 252 (633)
T TIGR00805 173 LLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTD 252 (633)
T ss_pred hhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCC
Confidence 67889999999999987 456788999999999999999999999999998887765543211
Q ss_pred -----ChhHHHHhhhHHHHHHHHHhhcccCc
Q 014304 117 -----DWRWLLGLSSIPSFILLAFLGFQPES 142 (427)
Q Consensus 117 -----~WR~~~~~~~i~~~i~~~~~~~lpES 142 (427)
.||..|++.++++++..+.++++||.
T Consensus 253 prWiGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 253 PRWIGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 27778888888777765556666665
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-12 Score=120.35 Aligned_cols=112 Identities=19% Similarity=0.124 Sum_probs=98.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccch-hhhhhhhhccCCC-cchhHHHHHHHHHHHhHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPS-NRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~~-~Rg~~~~~~~~~~~iG~~ 103 (427)
||+|+|..+++..+.+..++++-+|..+|.++++.|.+||+|..... ...++++...|.+ +||.++++...+..+|.+
T Consensus 131 ~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~l 210 (464)
T KOG3764|consen 131 DRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVL 210 (464)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccce
Confidence 59999999999999999999999999999999999999999988764 4567788888875 589999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhh
Q 014304 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG 137 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~ 137 (427)
+++..+.++..-.|.+.+|++.++..++-....+
T Consensus 211 vgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l 244 (464)
T KOG3764|consen 211 VGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQL 244 (464)
T ss_pred ecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHH
Confidence 9999888777778999999999888777555443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-10 Score=113.60 Aligned_cols=296 Identities=11% Similarity=-0.013 Sum_probs=151.2
Q ss_pred hhccchhh--hccchhHH-HHHHHHHHHHHHHhhcchh------HHHHHHHHHHhhhccccc-hhhhhhhhhcc-CCCcc
Q 014304 19 MFRLPHLW--QNLVRMGF-LGEALVTAGAGLLSSFSPN------YITLITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNR 87 (427)
Q Consensus 19 ~~~~~~~~--~~GRk~~l-~~~~~~~~i~~~~~~~a~~------~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~-p~~~R 87 (427)
++.++|-. |+|||+.. +++.+..+++.++....|+ ...+++.-++.+.+.... ..-.++..|+. ++++|
T Consensus 65 ~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR 144 (444)
T PRK09669 65 MGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRER 144 (444)
T ss_pred eeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHH
Confidence 44444431 59996554 4566666666655544543 345666666666554332 23345678987 45889
Q ss_pred hhHHHHHHHHHHHhHhHHHHHHHH----hc---CCCChhHHHHhhhHHHHHHHHHh-hcccCcchhHhhcCchHHHHHHH
Q 014304 88 GMWMVIFSSFWTIGSVSEAIGAWI----IM---PRLDWRWLLGLSSIPSFILLAFL-GFQPESPRYLCLKGRTAEAHRAL 159 (427)
Q Consensus 88 g~~~~~~~~~~~iG~~~~~~~~~~----~~---~~~~WR~~~~~~~i~~~i~~~~~-~~lpESP~~L~~k~r~~ea~~~l 159 (427)
++..+.-..+..+|..+++.+... .. ...+||..+.+.++.+++..+.. +..+|.++ +
T Consensus 145 ~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~---------~----- 210 (444)
T PRK09669 145 HSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYT---------P----- 210 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecC---------C-----
Confidence 988888887777877665543222 11 13579988877766655543332 22222110 0
Q ss_pred HHHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHH-HHHHHH
Q 014304 160 EKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLL-LFGNSF 238 (427)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~ 238 (427)
+ ++ + ..+....++.+++.+..+..+...++ ......
T Consensus 211 ---------~--------------~~-~-------------------~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~ 247 (444)
T PRK09669 211 ---------E--------------VD-N-------------------SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVT 247 (444)
T ss_pred ---------C--------------Cc-C-------------------CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 0 00 0 00011234445544443333222211 111111
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 014304 239 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV 318 (427)
Q Consensus 239 ~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~ 318 (427)
.. +.. ...... .....+.. ........+..+++..+.+++.||+|+|+.+..+.....+....+.
T Consensus 248 ~~-~~~---~y~~~~----------~~~~~~~~-~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~ 312 (444)
T PRK09669 248 RG-GAT---LYYVNY----------VLLRPDLA-TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIF 312 (444)
T ss_pred Hh-hhh---heeeee----------ecCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 10 110 000000 00001111 1111222344566777888999999999988766554433222222
Q ss_pred h-hcch-hHHHHHHHHHHHHHhhhhHhHHhhccccCc-------cchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhc
Q 014304 319 T-YQSN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYP-------TSVRSTGAGAANAMGRIGGMVCPLVAVALVANC 386 (427)
Q Consensus 319 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP-------t~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~ 386 (427)
. ..++ +.......+..++........+.+.+|+.+ .+..+...|+.+....+|..++|.+.+.+++..
T Consensus 313 ~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 313 FIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 2222 222222233334444555678899998886 344556677778888899999998888777643
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-09 Score=102.20 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=78.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHH----HHHHHhhhhHhHHhhcccc
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-QSNILTTGLLFG----ARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~El 351 (427)
.+..+.+++-..+.+++..|+|-|+++..+.+..++=....+.. ++.+.......+ -.......+.....|..|.
T Consensus 250 ~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~ 329 (400)
T PF03825_consen 250 ALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRI 329 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 35567788888889999999999998888766554433333332 222222222222 2222233456778999999
Q ss_pred CccchhhHHHHHHHHHhh-HhHhHHHHHHHHHHhhcch
Q 014304 352 YPTSVRSTGAGAANAMGR-IGGMVCPLVAVALVANCHQ 388 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~-~~~~~~p~~~~~l~~~~~~ 388 (427)
.|++.|+++.++-+.+.. +|+.++.++.+++.+..+.
T Consensus 330 ~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 330 APPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred CCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988765 8999999999999887654
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-09 Score=103.10 Aligned_cols=292 Identities=14% Similarity=0.116 Sum_probs=175.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSS---FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~---~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
+|+|+|+.++++..++.++..+-. -..+|..++++-|+.|.|.|.. .++.+|+.-..|++.-..-+++.+.+.++|
T Consensus 73 kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lG 152 (422)
T COG0738 73 KKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLG 152 (422)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhH
Confidence 499999999999999999999884 4567899999999999999985 677889888888876666688999999999
Q ss_pred HhHHHHHHHH-hcC------------------CCChhHHHHhhhHHHHHHHHHhh--cccCcchhHhhcCchHHHHHHHH
Q 014304 102 SVSEAIGAWI-IMP------------------RLDWRWLLGLSSIPSFILLAFLG--FQPESPRYLCLKGRTAEAHRALE 160 (427)
Q Consensus 102 ~~~~~~~~~~-~~~------------------~~~WR~~~~~~~i~~~i~~~~~~--~lpESP~~L~~k~r~~ea~~~l~ 160 (427)
.+++++++.. +.. ...||.++...+...++..+... .+||-+.
T Consensus 153 a~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~---------------- 216 (422)
T COG0738 153 AILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV---------------- 216 (422)
T ss_pred HHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc----------------
Confidence 9988876433 221 11355555544333222222111 1111110
Q ss_pred HHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHH
Q 014304 161 KIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAY 240 (427)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (427)
.+++ ..+.++ ....++++.++.+.-.+..+++.+.....
T Consensus 217 --------------------------~~~~-------------~~~~~~--~~~~~l~~~~~~~~gvl~~FlYVG~Eva~ 255 (422)
T COG0738 217 --------------------------AAPS-------------LGASGS--AGLSSLFQNKHLRLGVLAIFLYVGAEVAI 255 (422)
T ss_pred --------------------------cccc-------------cccccc--chHHHHHhChHHHHHHHHHHHHHhHHHHH
Confidence 0000 000000 13345666666555555555555544443
Q ss_pred HHHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh
Q 014304 241 YAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY 320 (427)
Q Consensus 241 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~ 320 (427)
+.. .+..... ..+.+..+..-+ ......+..+|-+++.+++.|+...+.+.....+....++.....
T Consensus 256 gsf---l~~y~~~--------~~g~~~~~aa~~--~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~ 322 (422)
T COG0738 256 GSF---LVSYLEE--------LLGLNEQQAAYY--LSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI 322 (422)
T ss_pred HHH---HHHHHHh--------cCCccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 322 1111100 001111122212 223455667788888899999988887766655554444443333
Q ss_pred cchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhH
Q 014304 321 QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT 390 (427)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 390 (427)
.+ ......++....+....|+..+....+..|.+.- ..|..-.++-+||.+.|.+.+++.+..+...
T Consensus 323 ~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts--~~s~~l~maivGGAiiP~l~G~i~d~~g~~~ 389 (422)
T COG0738 323 GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS--VGSGLLVMAIVGGAIIPPLQGVIADMFGIQL 389 (422)
T ss_pred cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc--ccceeeeeheecchHHHHHHHHHHHhhhhHH
Confidence 33 2233344445556667788889999999994433 3344445566899999999998887765433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.9e-10 Score=109.52 Aligned_cols=299 Identities=18% Similarity=0.111 Sum_probs=168.9
Q ss_pred hhhhccchh--hhccchhHHH-HHHHHHHHHHHHhhcc-h-------hHHHHHHHHHHhhhccccchh-hhhhhhhccCC
Q 014304 17 IFMFRLPHL--WQNLVRMGFL-GEALVTAGAGLLSSFS-P-------NYITLITLRCLVGVGLGSGHV-FLSWFLEFVPP 84 (427)
Q Consensus 17 ~~~~~~~~~--~~~GRk~~l~-~~~~~~~i~~~~~~~a-~-------~~~~l~v~R~l~G~g~G~~~~-~~~~~~E~~p~ 84 (427)
.+++..+|- .|+|||+..+ ++.+..+++.++.... | ....+.+.-++..++.....+ -.++..|.++.
T Consensus 55 p~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~ 134 (428)
T PF13347_consen 55 PLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPD 134 (428)
T ss_pred CcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcccccc
Confidence 345555552 2799876665 4667777776666655 4 223356666666666554433 34567899985
Q ss_pred -CcchhHHHHHHHHHHHhHhHHHHHHHHh----cC-C--CChhHHHHhhhHHHHHHHHH-hhcccCcchhHhhcCchHHH
Q 014304 85 -SNRGMWMVIFSSFWTIGSVSEAIGAWII----MP-R--LDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEA 155 (427)
Q Consensus 85 -~~Rg~~~~~~~~~~~iG~~~~~~~~~~~----~~-~--~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~k~r~~ea 155 (427)
++|.+..+.-+.+..+|.++.+.+...+ .. + .+|++...+.++..++..+. .+..+|.++ +.++.
T Consensus 135 ~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~------~~~~~ 208 (428)
T PF13347_consen 135 PDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV------EVTEQ 208 (428)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc------ccccc
Confidence 7899999999998888886554443332 11 1 27999988888776665443 445566000 00000
Q ss_pred HHHHHHHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHH-HH
Q 014304 156 HRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLL-LF 234 (427)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ 234 (427)
+ +..+-...++.+++.+..+..+....+ ++
T Consensus 209 -------------------------------~------------------~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~ 239 (428)
T PF13347_consen 209 -------------------------------E------------------KKISLRDSLRSLFRNRPFRILLLAFFLQWL 239 (428)
T ss_pred -------------------------------c------------------cccccccchhhhcccchHHHHHHHHHHHHh
Confidence 0 000000123444544433333333222 22
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHH
Q 014304 235 GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFL 314 (427)
Q Consensus 235 ~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~ 314 (427)
+..+..-...++....... ....+ ....+..+..+++..+.++++||+|+|+.+..+..+.+...
T Consensus 240 ~~~~~~~~~~y~~~~vl~~-------------~~~~~--~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~ 304 (428)
T PF13347_consen 240 AFALMNTFLPYYFTYVLGN-------------EGLIS--IFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF 304 (428)
T ss_pred hhhhhhhHHHHHHHHHhcC-------------chhhH--HHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence 2222111111111111100 01111 11234456667788888999999999999888777766555
Q ss_pred HHHHhhc--chhHHHHHHHHHHHHHhhhhHhHHhhccccCcc-------chhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 315 LPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT-------SVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 315 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt-------~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
..+.... +.+.......+...+....+...+.+.+|+.+. +..|.-.|+-+...+++..+++.+.+.+++.
T Consensus 305 ~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 305 LLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred HHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5444322 334333444444455555667889999999883 3346666777788889988888887776654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-09 Score=97.35 Aligned_cols=304 Identities=18% Similarity=0.161 Sum_probs=188.6
Q ss_pred hccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccchh-hhhhhhhccCCCcchhHHHHHHHHHHHhHhHH
Q 014304 27 QNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 27 ~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~ 105 (427)
|+|-++.+..++++..++..+-... +...++.+=.+.|.|++...+ .+.++-|..|+|. +.+++++.....+|..++
T Consensus 73 ~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLa 150 (395)
T COG2807 73 RFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALA 150 (395)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHH
Confidence 7888899999999999999988877 788999999999999998765 5667779999875 567888888888888888
Q ss_pred HHHHHHhcCCC-ChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccccccCCC
Q 014304 106 AIGAWIIMPRL-DWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 184 (427)
Q Consensus 106 ~~~~~~~~~~~-~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
+.++..+..+. +||....+=++|+++.++.|+ |...|. +. + +..+
T Consensus 151 a~lavpla~~~~gW~~aL~~WAl~allAl~~Wl--Pq~~r~-----~~-~---------~~~~----------------- 196 (395)
T COG2807 151 AALAVPLAQHSGGWRGALGFWALLALLALLIWL--PQALRE-----QA-A---------SIAT----------------- 196 (395)
T ss_pred hhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh--hhcccc-----cc-c---------cccc-----------------
Confidence 87776665554 799999999999988777653 222210 00 0 0000
Q ss_pred CCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccC
Q 014304 185 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS 264 (427)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~ 264 (427)
+ .+.+ ..+++++. .+.+...+--|+..||.+.-|+|.+....+.+
T Consensus 197 ------------------~-~~~~------~~vw~~~~---aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~s------- 241 (395)
T COG2807 197 ------------------K-LVSV------RKVWRSPL---AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLS------- 241 (395)
T ss_pred ------------------c-cccc------cccccCch---hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCC-------
Confidence 0 0000 01222221 22233333458899999999999876433211
Q ss_pred CCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh-ChhHHHHHHHHHH--HHHHHHHHhhcchhHHHHHHHHHHHHHhhhh
Q 014304 265 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-GRKLSITIMFTLS--CLFLLPLVTYQSNILTTGLLFGARMCVMGAF 341 (427)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~-GRR~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (427)
.........+..+.+.+..+..-.+.+|. .+|+........+ +.+.+.+ .+....+. . .++..+...+.+
T Consensus 242 ----a~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~-~P~~~~~l-w-~~llG~G~G~~F 314 (395)
T COG2807 242 ----AAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL-APGQLPIL-W-ALLLGLGQGGAF 314 (395)
T ss_pred ----HHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH-hhhhHHHH-H-HHHHhCccchHH
Confidence 11112223345677788888888899975 5555544322222 2222221 12222111 1 122223334445
Q ss_pred HhHHhhccccCcc-chhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHH-HHHHHHHHHHHHHHHhh
Q 014304 342 TVSLIYAAEIYPT-SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTA-VVLLVVVIVTSILSVML 408 (427)
Q Consensus 342 ~~~~~~~~ElfPt-~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~-~~~~~~~~~i~~~~~~~ 408 (427)
+.....+..-.++ +.-+.-.|+.+.+|++-+.++|++.+++-+..+.+.. ...++.+.+...++.+.
T Consensus 315 ~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 315 PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 5555555544443 5666777999999999999999999999888765433 33444444444444443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-09 Score=105.03 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=66.3
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh----hcch-hHHHHHHHHHHHHHhhhhHhHHhhcccc--
Q 014304 279 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQSN-ILTTGLLFGARMCVMGAFTVSLIYAAEI-- 351 (427)
Q Consensus 279 ~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El-- 351 (427)
..+..+++..+.+++.||+|||+.+..+..+..+..+.+.. ..++ +.......+..+.....+...+.+.+|+
T Consensus 275 ~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id 354 (473)
T PRK10429 275 AGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVD 354 (473)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34566777788899999999999887665543322222211 1122 2211222222233344556778889999
Q ss_pred ---CccchhhHHH--HHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 352 ---YPTSVRSTGA--GAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 352 ---fPt~~R~~~~--g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
+++..|..|. |.......++..+++.+.+.+++.
T Consensus 355 ~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 355 YGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred hhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566655554 666677789999999888877754
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=6e-10 Score=92.00 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=93.6
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHH
Q 014304 281 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG 360 (427)
Q Consensus 281 ~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~ 360 (427)
+...++..+.+++.||+|||+.+..+.....+..+......+.+......+...++.....+..+.+..|.+|++.|+++
T Consensus 9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (141)
T TIGR00880 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVA 88 (141)
T ss_pred hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHH
Confidence 34455677889999999999988776665554444333323322222222333333344456778899999999999999
Q ss_pred HHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 361 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 361 ~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
.++.+...+++..++|.+.+.+.+..+....+.+.+.+.+++.+...++.|||
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999988877665444566666777777777777777775
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=95.45 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=99.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+.....++.+...+++++..+.+.+++.|++.+.. +....+..|..|+++|++..++.+....+|..+
T Consensus 23 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 102 (141)
T TIGR00880 23 DRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLL 102 (141)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHH
Confidence 6999999999999999999998888999999999999999998875 456677889999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHH-HhhcccCc
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPES 142 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~-~~~~lpES 142 (427)
++.+...+....+||+.+.+.++..++..+ .++..||+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 103 GPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 888877777778999998887776655443 34455664
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-08 Score=100.21 Aligned_cols=117 Identities=15% Similarity=-0.004 Sum_probs=69.8
Q ss_pred hhhccchhh--hccchhHHHH-HHHHHHHHHHHhhcchh------HHHHHHHHHHhhhccccch-hhhhhhhhccC-CCc
Q 014304 18 FMFRLPHLW--QNLVRMGFLG-EALVTAGAGLLSSFSPN------YITLITLRCLVGVGLGSGH-VFLSWFLEFVP-PSN 86 (427)
Q Consensus 18 ~~~~~~~~~--~~GRk~~l~~-~~~~~~i~~~~~~~a~~------~~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p-~~~ 86 (427)
+++.++|=. |+|||+..++ +.+..+++.++.-..|+ ...+.+.-++..++.-... .-.++..|.++ +++
T Consensus 64 ~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e 143 (460)
T PRK11462 64 CMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ 143 (460)
T ss_pred hheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH
Confidence 344555532 7999766665 55666666655544442 2334444444544433322 23455679988 689
Q ss_pred chhHHHHHHHHHHHhHhHHHHHHHHh----cC---CCChhHHHHhhhHHHHHHHH
Q 014304 87 RGMWMVIFSSFWTIGSVSEAIGAWII----MP---RLDWRWLLGLSSIPSFILLA 134 (427)
Q Consensus 87 Rg~~~~~~~~~~~iG~~~~~~~~~~~----~~---~~~WR~~~~~~~i~~~i~~~ 134 (427)
|.+..++...+..+|..+++.+...+ .. ..+|+....+.++++++...
T Consensus 144 Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 144 RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999888876665543221 11 13688877666666555443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-08 Score=94.46 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhcc
Q 014304 270 ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 349 (427)
Q Consensus 270 ~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (427)
.+..+..+..++.+++|+++.+++.||+|-|+++.++.++..+..+...+..........-...+.+..+..+.+-.|-+
T Consensus 288 ~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~ 367 (438)
T COG2270 288 TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLA 367 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 44556667778889999999999999999998877766554433332222222211112212333455677788999999
Q ss_pred ccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHhhccccCCCCc
Q 014304 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQM-TAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 350 ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~l~pEtk~~~ 417 (427)
++.|++.-++-+|+-+..+|.+++.+|++...+.+..+.. ..+..+.++..++ +..+...|+.+.++
T Consensus 368 ~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iG-l~~L~~v~~~~~~~ 435 (438)
T COG2270 368 RLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIG-LLLLLRVKVPGRRE 435 (438)
T ss_pred HhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhh-HhhEEeecCCCCcc
Confidence 9999999999999999999999999999998777766543 2333344444444 44444444543333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-08 Score=101.39 Aligned_cols=105 Identities=12% Similarity=0.006 Sum_probs=66.6
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc-ch-hHHHHHHHHHHHHHhhhhHhHHhhccccCcc----
Q 014304 281 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-SN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPT---- 354 (427)
Q Consensus 281 ~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt---- 354 (427)
+..+++..+.+.+.||+|+|+.+..+..+..+....+.... ++ +.......+..++.....+..+...+|.-|.
T Consensus 275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~ 354 (448)
T PRK09848 275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL 354 (448)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 34556677888999999999988777655444333333322 22 2111212222333334445667777777764
Q ss_pred ---chhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 355 ---SVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 355 ---~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
+.++...|+.+....+|..+++.+.+.+++.
T Consensus 355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888898888889999998888776654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-08 Score=94.83 Aligned_cols=137 Identities=9% Similarity=0.048 Sum_probs=91.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+.+++.+.++.++++|+|-|+.++++..++++=....+...+.+.....=.+...-.........-|.++.||+++.
T Consensus 267 ~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rls 346 (412)
T PF01306_consen 267 VQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLS 346 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHH
Confidence 44567888888999999999999998887666554444434433333322221222211122234568899999999999
Q ss_pred hHHHHHHHHH-hhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 358 STGAGAANAM-GRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 358 ~~~~g~~~~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+|...+...+ ..++.++.+...+++.+..|...++++.+.+.+...++..+..++.|
T Consensus 347 At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 347 ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 9999998655 46888888889999999888767888888887777666666654433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-09 Score=103.78 Aligned_cols=141 Identities=18% Similarity=0.088 Sum_probs=96.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
....+...++.++.+.+.||+|||+.+..+....++..+......+.+......++..++..........+..|.+|++.
T Consensus 47 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 126 (385)
T TIGR00710 47 TLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE 126 (385)
T ss_pred HHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH
Confidence 34455667788899999999999999887766655544443333222222222222222333344567889999999999
Q ss_pred hhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 014304 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~ 417 (427)
|+++.|+.+....++..++|.+.+.+.+..+....+.+.+.+.++..+...+..||++.++
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE 187 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999887777655445566666666666666666667775543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.6e-09 Score=102.67 Aligned_cols=138 Identities=18% Similarity=0.115 Sum_probs=90.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
....+...++.++.+.+.||+|||+.+..+.++..+..+......+.+......++..++.....+....+.+|.+|++.
T Consensus 57 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 136 (406)
T PRK11551 57 SAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL 136 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH
Confidence 34456677788899999999999999887765554444333332222222222222233333344567889999999999
Q ss_pred hhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
|+++.++.+....+|+.++|.+...+.+..+-...+.+.+.+.++..+....+.||+.
T Consensus 137 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 137 RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999887765555443334455555555554444444456764
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=103.11 Aligned_cols=181 Identities=13% Similarity=0.156 Sum_probs=101.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhCh
Q 014304 220 SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR 299 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GR 299 (427)
++.++.....+..++......++.....+.+.... +.+............+...++.++.|++.||+||
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~ 100 (476)
T PLN00028 32 RPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNL-----------NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGP 100 (476)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445555555555555555555444444443211 1111111112233445567788899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHH
Q 014304 300 KLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA 379 (427)
Q Consensus 300 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~ 379 (427)
|+.+..+.+..++..+......+.......-++..++. +.......+.+|.||++.|+++.|+.+..+.+|+.+++.+.
T Consensus 101 r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~-~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~ 179 (476)
T PLN00028 101 RYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL-ATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLM 179 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHH
Confidence 99887766655554443333222222111112222222 22233455788999999999999999988888888777666
Q ss_pred HHHHh----h-----cchhHHHHHHHHHHHHHHHHHhhcccc
Q 014304 380 VALVA----N-----CHQMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 380 ~~l~~----~-----~~~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
+.+.. . .+-...+.+.+++.++..+...+++++
T Consensus 180 ~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 180 PLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 54432 1 122245666676666665666666544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-09 Score=102.77 Aligned_cols=139 Identities=13% Similarity=0.063 Sum_probs=96.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..+...++..+.+.++||+|||+.+..+....++.........+.+......++..++.....+....+.+|.+|++.
T Consensus 36 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 115 (399)
T TIGR00893 36 SAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE 115 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH
Confidence 34456677788899999999999998877766555444443333322222222233333334445677889999999999
Q ss_pred hhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
|+++.++.+....+|+.++|.+.+.+.+..+....+.+.+.+.++..+...++.||++.
T Consensus 116 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 116 RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 99999999999999999999988877766554455666666666665655555566543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.9e-09 Score=100.98 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=92.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+....+..+.|+++||+|||+.+..+.....+.........+.+......++...+....+...+.+.+|.+|++.|
T Consensus 46 ~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r 125 (392)
T PRK10473 46 VYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRR 125 (392)
T ss_pred HHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHH
Confidence 33455667778899999999999988877655544444333322222212222222222233345678899999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 416 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~ 416 (427)
+++.++.+....+++.++|.+...+.+..+....+.+.+.+.+++.+..++..||++.+
T Consensus 126 ~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (392)
T PRK10473 126 AKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999998877666554434456666666666656555555777644
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-09 Score=103.46 Aligned_cols=137 Identities=20% Similarity=0.085 Sum_probs=91.9
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+...++.++.+.+.||+|||+.+..+..+.++.........+.+......++..++.....+....+.+|.+|++.|
T Consensus 60 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r 139 (398)
T TIGR00895 60 AGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFR 139 (398)
T ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhh
Confidence 44556677888999999999999998877665555444433322222222222222233333456778999999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+++.|+......+|+.++|.+.+.+.+..+....+.+.+.+.++..+....+.||+.
T Consensus 140 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 140 GTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred chhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999887776654334455554455444455555556764
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=100.83 Aligned_cols=136 Identities=14% Similarity=0.020 Sum_probs=87.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+....+..+.|.++||+|||+.+..+....++.........+.+.................+....+.+|.+|++.|
T Consensus 51 ~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 130 (395)
T PRK10054 51 IALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSK 130 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHH
Confidence 33455667778899999999999988776655544443333322222211111111111122234567888999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+++.|+.+....+|..++|.+.+.+.+ .+...++...+.+.+++.+...+..||++
T Consensus 131 ~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 131 TKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999887764 34345566666665665555544334543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-08 Score=106.50 Aligned_cols=108 Identities=20% Similarity=0.203 Sum_probs=78.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..++.++|.++.++++||+|||+.++.+.++.++..+...+..+.+...+.-++..++..+..+..+.+.+|.+|++.
T Consensus 209 s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~ 288 (742)
T TIGR01299 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK 288 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 34456778889999999999999999888766555444433332222222233334444555566788999999999999
Q ss_pred hhHHHHHHHHHhhHhHhHHHHHHHHHHh
Q 014304 357 RSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p~~~~~l~~ 384 (427)
|++..++...+..+|+++++.+...+..
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il~ 316 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAIIP 316 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877655543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-08 Score=97.03 Aligned_cols=138 Identities=19% Similarity=0.064 Sum_probs=93.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccc
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....+...++..+.|.++||+|||+.+..+....++......+..+.+......++..++.....+....+..|.+|.+
T Consensus 38 ~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~ 117 (352)
T PF07690_consen 38 FSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPE 117 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhh
Confidence 33445667788889999999999999888877766655333332223232222233333444455667899999999999
Q ss_pred hhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
.|+++.++.+....+|..++|.+.+.+.+..+....+.+.+.+.+++.++...+.+|+
T Consensus 118 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 118 ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred hhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhc
Confidence 9999999999999999999999988776554444567777777777766433343443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-08 Score=99.38 Aligned_cols=137 Identities=10% Similarity=-0.063 Sum_probs=89.9
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhh
Q 014304 279 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 358 (427)
Q Consensus 279 ~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 358 (427)
..+...++.++.+++.||+|||+.+..+.++.++.........+.+.....-++..++.....+....+.+|.+|++.|+
T Consensus 52 ~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg 131 (412)
T TIGR02332 52 FYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRA 131 (412)
T ss_pred HHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHH
Confidence 34555667788899999999999887776655544444333222222222222223333334456677899999999999
Q ss_pred HHHHHHHHHhhHhHhHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 359 TGAGAANAMGRIGGMVCPLVAVALVAN------CHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 359 ~~~g~~~~~~~~~~~~~p~~~~~l~~~------~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
++.|+.+....+|..++|.+.+++.+. .+-...+.+.++..++..++..++.||++.
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 132 RANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 999999999899999999888777642 222345666666665555555555677653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-08 Score=99.13 Aligned_cols=137 Identities=17% Similarity=0.119 Sum_probs=87.3
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..+...++..+.|.+.||+|||+.+..+....++..+......+.+......++...+....+.....+..|.+|++.
T Consensus 54 ~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 133 (405)
T TIGR00891 54 SAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL 133 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence 34456677788899999999999998887766555444433332222222222222223333445567888999999999
Q ss_pred hhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
|+++.++.+....+|.+++|.+.+.+.+..+ -...+.+.+...++. ++.....||++
T Consensus 134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~ 192 (405)
T TIGR00891 134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAE 192 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence 9999999999999999999988887766543 122333333333333 33333446764
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-08 Score=101.97 Aligned_cols=165 Identities=14% Similarity=0.074 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh-ChhHHHHHH
Q 014304 228 LLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-GRKLSITIM 306 (427)
Q Consensus 228 ~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~-GRR~~~~~~ 306 (427)
.++..-+...+.+|++..+.+...... .+.+................++.+++|+++||+ |||+.+..+
T Consensus 13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~----------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG 82 (493)
T PRK15462 13 YVVALQIWEYFSFYGMRALLILYLTNQ----------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG 82 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 334444456678888776666443211 011111122222333445566778999999998 999988877
Q ss_pred HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhhhhHhHHhhccccCccc--hhhHHHHHHHHHhhHhHhHHHHHHHHHH
Q 014304 307 FTLSCLFLLPLVTYQS-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS--VRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 307 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~--~R~~~~g~~~~~~~~~~~~~p~~~~~l~ 383 (427)
.+...+..+.+..... .......+.....+.....+....+.+|+||++ .|.++.++.++.+++|++++|.+.+++.
T Consensus 83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 6665544333332211 111111111111111112244568899999986 7999999999999999999999999887
Q ss_pred hhcchhHHHHHHHHHHHHH
Q 014304 384 ANCHQMTAVVLLVVVIVTS 402 (427)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~ 402 (427)
+..+-...+...++..+++
T Consensus 163 ~~~Gw~~~F~iaaigm~l~ 181 (493)
T PRK15462 163 EEYSWAMGFGLAAVGMIAG 181 (493)
T ss_pred hhhChHHHHHHHHHHHHHH
Confidence 7655334444444333333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-08 Score=100.12 Aligned_cols=139 Identities=18% Similarity=0.067 Sum_probs=92.5
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...++..++..+.+.++||+|||+.+..+....++.........+.+......++...+........+.+..|.+|++.|
T Consensus 56 ~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~ 135 (406)
T PRK15402 56 AYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADA 135 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHH
Confidence 44555667778899999999999988877665555444433322222212222222222222335667888999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 416 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~ 416 (427)
..+.++......++..++|.+.+.+.+..+-...+.+.+.+.+++.+..++..||++..
T Consensus 136 ~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (406)
T PRK15402 136 IKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGR 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 99999998888888999998888776654444566666767666666555556787643
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5e-07 Score=90.71 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=79.3
Q ss_pred hhc-cchhHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCC--cchhHHHHHHHHHHH
Q 014304 26 WQN-LVRMGFLGEALVTAGAGLLSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPS--NRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~-GRk~~l~~~~~~~~i~~~~~~~a~-~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~i 100 (427)
||+ |||+++.++.++..++.++.+... +...++++-.+.++|.|.. +...+++.|..|++ +|+...++.....++
T Consensus 70 DRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nl 149 (493)
T PRK15462 70 DKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNV 149 (493)
T ss_pred HHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHH
Confidence 598 999999999999999887666543 2233444444555566654 44567789999986 688888888888999
Q ss_pred hHhHHHHHHHHhcCCCChhHHHHhhhHHHH
Q 014304 101 GSVSEAIGAWIIMPRLDWRWLLGLSSIPSF 130 (427)
Q Consensus 101 G~~~~~~~~~~~~~~~~WR~~~~~~~i~~~ 130 (427)
|..+++.+...+....|||+.|.++++..+
T Consensus 150 G~~iap~l~g~L~~~~Gw~~~F~iaaigm~ 179 (493)
T PRK15462 150 GSIIAPIACGYAQEEYSWAMGFGLAAVGMI 179 (493)
T ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence 999998888777777899999988765433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-07 Score=93.45 Aligned_cols=293 Identities=19% Similarity=0.150 Sum_probs=159.2
Q ss_pred hccchhHHH-HHHHHHHHHHHHhhcchhH------HHHHHHHHHhhhccccch-hhhhhhhhccCC-CcchhHHHHHHHH
Q 014304 27 QNLVRMGFL-GEALVTAGAGLLSSFSPNY------ITLITLRCLVGVGLGSGH-VFLSWFLEFVPP-SNRGMWMVIFSSF 97 (427)
Q Consensus 27 ~~GRk~~l~-~~~~~~~i~~~~~~~a~~~------~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~-~~Rg~~~~~~~~~ 97 (427)
|+||++..+ ++.+..++...++-.+|+. ...++--.+.|++--... .-.++..|+.+. ++|.+..+.-+.+
T Consensus 78 r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~ 157 (467)
T COG2211 78 RWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVF 157 (467)
T ss_pred ccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHH
Confidence 799965554 4668888888888777742 234444555555433322 223345688665 8899999999999
Q ss_pred HHHhHhHHHHHHHHh----cC---CCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCC
Q 014304 98 WTIGSVSEAIGAWII----MP---RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKL 170 (427)
Q Consensus 98 ~~iG~~~~~~~~~~~----~~---~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~ 170 (427)
..+|.++.+.+...+ .+ ..||+..-.+-++.+.+..++.++ ..|+|..|+.
T Consensus 158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~--------~v~ER~~~~~-------------- 215 (467)
T COG2211 158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFF--------NVKERVVETQ-------------- 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH--------HhhcccCccc--------------
Confidence 999987666544322 22 458998887777777666554432 1222211100
Q ss_pred CCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 014304 171 PNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWL-LLFGNSFAYYAVVLLISE 249 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~y~~~~~~~~ 249 (427)
+ . +++........+..+++.+.++..+...+ .+.+.++..-...++...
T Consensus 216 ~------------------~------------~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y 265 (467)
T COG2211 216 P------------------T------------KTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTY 265 (467)
T ss_pred c------------------C------------cccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEE
Confidence 0 0 00000000113334455443333322222 222222211111111111
Q ss_pred hhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcc--hhHHH
Q 014304 250 LSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS--NILTT 327 (427)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 327 (427)
. .+......+.......+..+.+.++...+.+|+|+|+++.++.++.++....+.+... .+...
T Consensus 266 ~--------------lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~ 331 (467)
T COG2211 266 V--------------LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIV 331 (467)
T ss_pred E--------------cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHH
Confidence 1 1122222233344445555666778889999999999998887666555544444222 22222
Q ss_pred HHHHHHHHHHhhhhHhHHhhcccc-----CccchhhHHH--HHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 328 GLLFGARMCVMGAFTVSLIYAAEI-----YPTSVRSTGA--GAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~El-----fPt~~R~~~~--g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
+..++.........++.|++.+|. +-|..|..|. +....+..+|..++.++.+.+++.
T Consensus 332 ~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 332 VALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred HHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566677889998887 4566676665 555566678877777777766654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-08 Score=89.06 Aligned_cols=132 Identities=13% Similarity=0.069 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhhhChhHHHHHHHHHHHHHHH-HHHhh-cchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHH
Q 014304 285 PGLLLAAILVDTAGRKLSITIMFTLSCLFLL-PLVTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAG 362 (427)
Q Consensus 285 ~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g 362 (427)
+..-+.+.++||.||+.....+..+..+..= .+.+. .+++..+.++ ...... .....|...+-+-|.+--+||+|
T Consensus 315 v~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~l--GLsysl-lAcslWP~va~~vpE~qLGTayg 391 (459)
T KOG4686|consen 315 VLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFL--GLSYSL-LACSLWPCVASLVPEEQLGTAYG 391 (459)
T ss_pred hhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHH--hhhHHH-HHHHHhhhhhhhCCHHHhcchHH
Confidence 3445789999999999877665443332211 11121 2233222211 111111 11346888888999999999999
Q ss_pred HHHHHhhHhHhHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q 014304 363 AANAMGRIGGMVCPLVAVALVANCHQ----MTAVVLLVVVIVTSILSVMLIPFETKGQELSD 420 (427)
Q Consensus 363 ~~~~~~~~~~~~~p~~~~~l~~~~~~----~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l~e 420 (427)
++.+..++|-.+.|.+.+.+.+.-+. ...++.++.+.++...+.+.+ -+.++-+++.
T Consensus 392 f~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~-N~kq~gnLN~ 452 (459)
T KOG4686|consen 392 FIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL-NKKQSGNLNR 452 (459)
T ss_pred HHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe-eccccCCCCC
Confidence 99999999999999998877654332 223344555555554444444 2444444443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-08 Score=100.16 Aligned_cols=181 Identities=11% Similarity=-0.016 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHH
Q 014304 223 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS 302 (427)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~ 302 (427)
+++.+.++...+.+.+..+....+.|.+.... +.+............+...++..+.+.+.||+|||+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 77 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSL-----------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNI 77 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 33444555555556666665555556554211 1111111112223344556778889999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHH
Q 014304 303 ITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l 382 (427)
+..+..+.++..+......+.+.....-.+..++.....+....+..|.+|++.|+++.|+.+....++..++|.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l 157 (471)
T PRK10504 78 FFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLL 157 (471)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 87765554443333232222222122222222333333456788899999999999999999999999999999998888
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 383 VANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.+..+-...+.+...+..++.+......|+.+
T Consensus 158 ~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 158 VEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 77655344555555555555555555555543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-08 Score=99.90 Aligned_cols=136 Identities=12% Similarity=0.041 Sum_probs=90.6
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...+...++.++.+++.||+|||+.+..+..+.++..+......+.+......++..++....+.....+.+|.+|.+.|
T Consensus 66 ~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~r 145 (434)
T PRK11663 66 LFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTER 145 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHH
Confidence 44556677888999999999999998887776665554443322222211222222232333445677889999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+++.|+.+..+.+|+.++|.+.+.+.+..+-...+.+.+++.++..+...+..||+
T Consensus 146 g~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 146 GGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999888877765544455555555544433333333443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-08 Score=101.34 Aligned_cols=110 Identities=21% Similarity=0.168 Sum_probs=78.6
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...++..++.++.+.+.||+|||+.+..+....++..+......+.+......++..++..+.++....+..|.+|.+.|
T Consensus 63 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r 142 (496)
T PRK03893 63 AAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLR 142 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34556677888999999999999988877665555444433333222222222333333344456678889999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcc
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~ 387 (427)
+++.++.+....+|++++|.+.+.+.+..+
T Consensus 143 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 172 (496)
T PRK03893 143 NKASGFLISGFSIGAVVAAQVYSLVVPVWG 172 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999998887776554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.4e-08 Score=96.56 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=92.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...+...++..+.+.+.||+|||+.+..+..+.++.........+.+.....-....++.....+....+.+|.+|++.|
T Consensus 63 ~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~ 142 (394)
T PRK10213 63 VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTV 142 (394)
T ss_pred HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHH
Confidence 34555667778889999999999998887776655444433332222222222233333333456678888999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+.+.++......++..++|.+.+.+.+..+-...+.+.+.+.+++.+......||++
T Consensus 143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999888877655445555555555555444444456754
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-08 Score=94.50 Aligned_cols=133 Identities=13% Similarity=-0.022 Sum_probs=87.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHHHHHhhhhHhHHhhcccc
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-----SNILTTGLLFGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 351 (427)
.+..+...++..+.|.+.||+|||+.+..+..+..+......... +.+...+..++..++.....+....+.+|+
T Consensus 41 ~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 120 (365)
T TIGR00900 41 LAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDL 120 (365)
T ss_pred HHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556667778899999999999998877655444333322211 222222222222333333445678899999
Q ss_pred CccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 014304 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l 409 (427)
+|++.|+++.|+.+....+|.+++|.+.+.+.+..+....+.+.+...+++.+....+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 121 VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988887766554444555455445554444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-08 Score=98.39 Aligned_cols=136 Identities=15% Similarity=0.059 Sum_probs=91.6
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhH
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
.++...+.++.+.++||+|||+.+..+..+.++..+......+.+...+.-++..++........+.+..|.+|++.|++
T Consensus 61 ~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
T PRK15403 61 LAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIK 140 (413)
T ss_pred HHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 45556678889999999999998887766555444433332222222222222222222223456788999999999999
Q ss_pred HHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 360 ~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
+.++.+....++..++|.+.+.+.+..+-...+.+.+++.+++.+...+..|||+.
T Consensus 141 ~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 141 LMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999888777665444456666677666666555555578764
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.8e-08 Score=95.71 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=82.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...+...++.++.+++.||+|||+.+..+.+..++.........+.+...+..++..++.....+....+.+|.+|++.|
T Consensus 50 ~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r 129 (394)
T PRK03699 50 FLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQR 129 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchH
Confidence 34456677888999999999999988777665555444333322222222222222232233345567888999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHH
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVAN-CHQMTAVVLLVVVIVTSILS 405 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~ 405 (427)
+.+.++.+....+++.++|.+.+.+.+. .+-...+...+.+.++..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 130 GSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 9999999888888999999888776653 23234455555555444333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-08 Score=101.31 Aligned_cols=138 Identities=14% Similarity=0.017 Sum_probs=93.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...+...++..+.+++.||+|||+.+..+..+.++.........+.......-++..++.....+....+..|.+|++.|
T Consensus 45 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r 124 (485)
T TIGR00711 45 SYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKR 124 (485)
T ss_pred HHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHH
Confidence 44566677888999999999999998877665554444333322222222222222233333456778999999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
+++.++......++..++|.+.+++.+..+-...+.+.+.+.+++.+...++.||++.
T Consensus 125 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 125 GRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred HHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 9999999999999999999998877766543345555555555555555555566544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.4e-08 Score=97.41 Aligned_cols=110 Identities=17% Similarity=0.126 Sum_probs=77.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+...++..+.+.++||+|||+.+..+....++.........+.+...+.-++..++....++....+.+|.+|++.|
T Consensus 61 ~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r 140 (426)
T PRK12307 61 AAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLK 140 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHh
Confidence 44566677888999999999999999887766655544433333322222222333333334456678899999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcc
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCH 387 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~ 387 (427)
+++.++......+|.+++|.+.+.+.+..+
T Consensus 141 ~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~ 170 (426)
T PRK12307 141 SKASAFLVSGFGIGNIIAAYFMPSFAEAYG 170 (426)
T ss_pred hHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence 999999998888999999988776665544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-08 Score=96.31 Aligned_cols=139 Identities=16% Similarity=0.060 Sum_probs=95.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+....+.++.+.++||+|||+.+..+....++.........+.+......++..++..........+..|.+|++.|
T Consensus 34 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
T PRK11102 34 AYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEF 113 (377)
T ss_pred HHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34556667788899999999999998877766655544443333222222222333333333445667899999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 416 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~ 416 (427)
+++.++.+....+++.++|.+.+.+.+..+....+.+.+.+.++..+...+..||++.+
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (377)
T PRK11102 114 SRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPK 172 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcc
Confidence 99999999999999999999888777765544556666666666655555555676433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-07 Score=93.79 Aligned_cols=134 Identities=7% Similarity=-0.053 Sum_probs=88.4
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhH
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
.+...++....+.+.||+|||+.+..+....++.........+.+...+.-++........++....+.+|.+|.+.|++
T Consensus 54 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~ 133 (390)
T PRK03545 54 AWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQ 133 (390)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhh
Confidence 34445566778999999999999988766655544433332222222222122222222233556788899999999999
Q ss_pred HHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 360 ~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+.|+......++..++|.+.+.+.+..+-...+.+.+.+.++..+......||.
T Consensus 134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 134 ALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999998888777665545566776766665555554444554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.1e-08 Score=97.46 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=74.2
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcc--h----hHHHHHHHHHHHHHhhhhHhHHhhcc
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS--N----ILTTGLLFGARMCVMGAFTVSLIYAA 349 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (427)
.....++..++.++.+++.||+|||+.+..+.++..+..+......+ + ....+.-++..++..+.++....|.+
T Consensus 62 ~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~ 141 (502)
T TIGR00887 62 NGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITS 141 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34445667788899999999999999887766555444333332211 1 11122223333444555677899999
Q ss_pred ccCccchhhHHHHHHHHHhhHhHhHHHHHHHHH
Q 014304 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 350 ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l 382 (427)
|.+|++.|+++.++.+....+|..+++.+...+
T Consensus 142 e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 142 EFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887765544
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=99.47 Aligned_cols=137 Identities=14% Similarity=0.059 Sum_probs=88.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..+...++.++.++++||+|||+.+..+.+..++..+......+.+...+..++..++.....+....+.+|.+|++.
T Consensus 37 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 116 (379)
T TIGR00881 37 SSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE 116 (379)
T ss_pred HHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh
Confidence 34456667788899999999999999888776665554444333322222222222223333345677889999999999
Q ss_pred hhHHHHHHHHHhhHhHhHHH-HHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 357 RSTGAGAANAMGRIGGMVCP-LVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p-~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
|+++.++.+....+|+.++| .+...+....+....+.+.+.+.++..+...++.||+
T Consensus 117 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 117 RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 99999999999999999998 4544444443333445555555555445555554554
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-07 Score=95.15 Aligned_cols=138 Identities=13% Similarity=0.008 Sum_probs=80.8
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc---chhH-HHHHHHHHHHHHhhhhHhHHhhccccC
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---SNIL-TTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
....+...++..+.|.++||+|||+.+..+..+.++..+...... .+.. .....++..++....++.......|.+
T Consensus 70 ~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~ 149 (452)
T PRK11273 70 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW 149 (452)
T ss_pred HHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhC
Confidence 344556677888999999999999988877666555444333211 1221 112222222332233344556778999
Q ss_pred ccchhhHHHHHHHHHhhHhHh-HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 353 PTSVRSTGAGAANAMGRIGGM-VCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
|++.|+++.|+.+....+|+. .+|.....+....+-...+++.+.+.++..+...++.||+.
T Consensus 150 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 150 SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 999999999998888888764 45543322222212223455555555554455545445643
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-07 Score=91.82 Aligned_cols=139 Identities=14% Similarity=0.016 Sum_probs=86.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
....+...++..+.+.++||+|||+.+..+.+...+..+......+.+......++..++..........+..|.+|.+.
T Consensus 50 ~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 129 (394)
T PRK11652 50 AAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ 129 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH
Confidence 34455667778889999999999998877665554444333332222221121122222222223455677889999999
Q ss_pred hhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
|+.+.++.+....++..++|.+.+.+.+..+-...+.+.+.+.++..+...++.||++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 99999988888888888999888877665443445555555555444444445567643
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-07 Score=92.46 Aligned_cols=135 Identities=16% Similarity=0.054 Sum_probs=88.5
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+...++..+.|.+.||+|||+.+..+....+...+......+.+..........++ .+..+....+..|.+|++.|
T Consensus 62 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~ 140 (408)
T PRK09874 62 ITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL-GGFVPNANALIATQVPRNKS 140 (408)
T ss_pred HHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hhhHHhHHHHHHHhcCHhhh
Confidence 34455666777889999999999988776655544443333322222211111112221 22334456678899999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+++.|+.+....++.+++|.+.+.+.+..+....+.+.+.+.+++.+...++.||+
T Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999988777655544566666666666666565555564
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-07 Score=90.56 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=71.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHhhhhHhHHhhccccCccc
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.+..+...++.++.+.++||+|||+.+..+.+..++..+...... +.+......+...+. .+.+.....+.+|.+|++
T Consensus 44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~ 122 (366)
T TIGR00886 44 AVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWISFFFPKK 122 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHHHHhcCHh
Confidence 344566677888999999999999998877766655544443322 222211111222222 233455677899999999
Q ss_pred hhhHHHHHHHHHhhHhHhHHHHHHHHHHh
Q 014304 356 VRSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~~~p~~~~~l~~ 384 (427)
.|+++.++......+|..+++.+.+.+..
T Consensus 123 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 123 IQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999998888888777776665544
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-07 Score=93.19 Aligned_cols=136 Identities=17% Similarity=0.049 Sum_probs=86.8
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccC-ccchhh
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY-PTSVRS 358 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-Pt~~R~ 358 (427)
.+....+....|.++||+|||+.+..+..+..+..+......+.+...+.-.+..++..+..+.......+.+ |++.|+
T Consensus 51 ~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~ 130 (495)
T PRK14995 51 SLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN 130 (495)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3344456678899999999999998877665544443333222222222212222222223334445555655 789999
Q ss_pred HHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 359 TGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 359 ~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
++.|+......+|..++|.+.+.+.+..+-.+.+++...+++++.+...+..||.++
T Consensus 131 ~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 131 MALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999988776553455666565666665555555566543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-07 Score=91.27 Aligned_cols=137 Identities=10% Similarity=0.046 Sum_probs=91.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...++..++..+.+++.||+|||+.+..+..+.++..+......+.+...+.-++..++.....+....+..|.+|++.|
T Consensus 46 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~ 125 (382)
T PRK10091 46 YYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKV 125 (382)
T ss_pred HHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHh
Confidence 44566778888999999999999999887776665554444333332222222222222222334556788999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+.+.+.......++..++|.+..++.+..+-...+.+.+.+.++..+...+..||.+
T Consensus 126 ~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 126 TAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999888888999998888776666555445666666655555555555557754
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-07 Score=94.67 Aligned_cols=171 Identities=15% Similarity=0.025 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhh-hChhHHHHHH
Q 014304 228 LLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLSITIM 306 (427)
Q Consensus 228 ~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~-~GRR~~~~~~ 306 (427)
.++...+...++||+...+.+...+... ..+.+................++.+++|++.|| +|||+.+..+
T Consensus 14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~--------~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 14 TLFFVELWERFSYYGMQGILAVYLVQQA--------GLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 3444455667888887766664432110 001111111222233445667788899999999 8999999887
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch---hhHHHHHHHHHhhHhHhHHHHHHHHHH
Q 014304 307 FTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV---RSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~---R~~~~g~~~~~~~~~~~~~p~~~~~l~ 383 (427)
.++.++..+.+....+.........+...+.....+....+.+|.+|++. |+++.++.+...++|+.++|.+.+++.
T Consensus 86 ~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 86 GIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 77666554444432222221111122222222233566788899998764 999999999999999999999999887
Q ss_pred hhcchhHHHHHHHHHHHHHHHHH
Q 014304 384 ANCHQMTAVVLLVVVIVTSILSV 406 (427)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~~~~ 406 (427)
+..+....+...++..+++.+..
T Consensus 166 ~~~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 166 ENYGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred HhcChHHHHHHHHHHHHHHHHHH
Confidence 76554445555454444443333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-07 Score=91.02 Aligned_cols=133 Identities=8% Similarity=-0.082 Sum_probs=86.7
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhH
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
.+.......+.|.++||+|||+.+..+.....+.........+.+.......+..++.....+....+..|.+|++.|++
T Consensus 56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (400)
T PRK11646 56 QFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR 135 (400)
T ss_pred HHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34444556788999999999999988777666555544433333322222222222222223455778899999999999
Q ss_pred HHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 360 ~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+.|+.+....+|..++|.+.+.+. ..+....+.+.+.+.+++.++..+..||.
T Consensus 136 a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 136 FFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999988877 44434455555555555544444444554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-07 Score=93.69 Aligned_cols=138 Identities=17% Similarity=0.084 Sum_probs=85.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc---chhHHH-HHHHHHHHHHhhhhHhHHhhccccC
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---SNILTT-GLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
.+..+...++.++.+++.||+|||+.+..+.++.++..+...... ++.... ...++..++....++.......|.+
T Consensus 68 ~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~ 147 (438)
T TIGR00712 68 SAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWW 147 (438)
T ss_pred HHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhc
Confidence 344566677888999999999999988776655554443332211 111111 1112222222223445667788999
Q ss_pred ccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN-CHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
|++.|+++.|+.+....+++.++|.+.....+. .+-...+++.+.+++++.+...++.||++
T Consensus 148 ~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 148 SQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred CcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 999999999999999999998888766654433 22234556666666665555555556643
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-07 Score=88.83 Aligned_cols=132 Identities=22% Similarity=0.143 Sum_probs=89.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccc
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....+...++..+.+.+.||+|||+.+..+.....+.........+.+.......+..++.....+....+.+|.+|++
T Consensus 40 ~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 119 (352)
T cd06174 40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc
Confidence 34445667778889999999999999887777666555544433322222222222222233334567789999999999
Q ss_pred hhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 014304 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVM 407 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 407 (427)
.|+++.++.+....+|+.++|.+.+.+.+..+....+.+.+.+.+++.+...
T Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
T cd06174 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL 171 (352)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988877665433445555555444444433
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=6e-07 Score=88.58 Aligned_cols=136 Identities=18% Similarity=0.119 Sum_probs=88.5
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..+...++.++.+.++||+|||+.+..+.++..+..+......+.+......++..++..........+..|.+|.+.|
T Consensus 49 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~ 128 (401)
T PRK11043 49 LFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKA 128 (401)
T ss_pred HHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHH
Confidence 44556677888999999999999998877665554443333322222211111222222222233445678899999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+...+..+....+++.++|.+.+++.+..+-...+.+.+.+.++..+....++||.
T Consensus 129 ~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
T PRK11043 129 NRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK 184 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999998888899999999988887765544556666666666655555555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-07 Score=88.94 Aligned_cols=133 Identities=13% Similarity=0.044 Sum_probs=80.6
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..+...++..+.|.++||+|||+.+..+.++.++..+......+.+..........++....+.....+..|.+|. .
T Consensus 45 s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 123 (377)
T TIGR00890 45 TLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K 123 (377)
T ss_pred HHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c
Confidence 344566677888899999999999998877666555444333322222211211222222222334455667788874 5
Q ss_pred hhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 014304 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
|+++.++......+|+.+++.+...+.+..+-...+.+.+++.++..+..+++.
T Consensus 124 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 124 RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 999999998888888877655555555544333456666666655555554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-06 Score=86.49 Aligned_cols=132 Identities=11% Similarity=-0.043 Sum_probs=85.0
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
...+.......+.|.+.||+|||+.+..+..+..+.........+. ...-++...+.....+....+.+|++|++.|
T Consensus 46 ~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~ 122 (393)
T PRK11195 46 FFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKL 122 (393)
T ss_pred HHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3345566677889999999999999988766554433322221111 1212222333344556778999999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+++.|+......++..++|.+.+.+.+.. ...++.+.+.+.+++.+.. +..||.+
T Consensus 123 ~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~~~-~~l~~~~ 177 (393)
T PRK11195 123 VKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAALFN-LFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCCCCc
Confidence 99999999999999999999988877643 2233333333333443333 3446654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.6e-07 Score=88.02 Aligned_cols=137 Identities=16% Similarity=0.086 Sum_probs=85.8
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---h-hcchhHH-HHHHHHHHHHHhhhhHhHHhhcccc
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---T-YQSNILT-TGLLFGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~---~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~El 351 (427)
....+...++..+.|.++||+|||+.+..+....++....+. . ..++... ....+...++.....+....+.+|.
T Consensus 59 ~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 138 (417)
T PRK10489 59 TLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPAL 138 (417)
T ss_pred HHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 344566677788899999999999987765554443332221 1 1122211 1111222222222334557789999
Q ss_pred CccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.|++.|+++.++.+....+|..++|.+.+.+.+..+....+.+.+...+++.+....+ ||++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 200 (417)
T PRK10489 139 VGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALP 200 (417)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCC
Confidence 9999999999999998999999999988877765544455555555555555554444 4543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.7e-07 Score=86.84 Aligned_cols=134 Identities=10% Similarity=-0.051 Sum_probs=83.2
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhH
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
.++..++.+..|++.||+|||+.+..................+-......-++.... .+.........+|.+|++.|++
T Consensus 36 ~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g-~~~~~~~~~~~~~~~~~~~r~~ 114 (368)
T TIGR00903 36 PAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALG-QPFLLNAFAPAASQIREERRDL 114 (368)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhH-hHHHHHHHHHHHHHcCHHHHHH
Confidence 445567778899999999999876554433322221111111111111111111121 2223344555689999999999
Q ss_pred HHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 360 ~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+.++.+....+|+.++|.+.+.+.+..+=...+++.+.+.++..+..++..||++
T Consensus 115 a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 115 VISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999988887776544234555557766666666666667754
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-06 Score=85.80 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=80.6
Q ss_pred hhhhccchh-hh--ccchhHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHhhhccccc-hhhhhhhhhccCC--Cc
Q 014304 17 IFMFRLPHL-WQ--NLVRMGFLGEALVTAGAGLLSSFSP----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPP--SN 86 (427)
Q Consensus 17 ~~~~~~~~~-~~--~GRk~~l~~~~~~~~i~~~~~~~a~----~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~--~~ 86 (427)
-+++.++|. .- |-||+=++++.++.+++.+..+..+ +.....+.=++.-+|.... ..+-..+.|...+ +.
T Consensus 42 p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~ 121 (433)
T PF03092_consen 42 PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES 121 (433)
T ss_pred hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence 355666665 22 4455555556666655555555433 4556666667777766554 3455677788743 33
Q ss_pred chhHHHHHHHHHHHhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHH-HhhcccC
Q 014304 87 RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPE 141 (427)
Q Consensus 87 Rg~~~~~~~~~~~iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~-~~~~lpE 141 (427)
||...+....+..+|.++++.++.......++|..|.+.+...++..+ ..+..+|
T Consensus 122 ~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 122 RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 778888888888899999888877777778899988887765555443 3444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-07 Score=91.55 Aligned_cols=135 Identities=13% Similarity=-0.004 Sum_probs=91.2
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh-cch-hHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 279 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-QSN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 279 ~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
..++..++.++++.+.||+|||+.+..+.++.++..+..... ... ....+.-++..++....++....+.+|.+|++.
T Consensus 85 ~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~ 164 (465)
T TIGR00894 85 HFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE 164 (465)
T ss_pred HHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH
Confidence 345667788889999999999998887766655444332211 111 111111222223333445677889999999999
Q ss_pred hhHHHHHHHHHhhHhHhHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 357 RSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
|+++.|+......+|.+++|.+.+.+.+.. +-...+.+.+++.++..++.+.++||.
T Consensus 165 r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 165 RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988877653 433456666666666656565555553
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.9e-08 Score=95.97 Aligned_cols=119 Identities=18% Similarity=0.076 Sum_probs=92.4
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhcc-h---hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHH-HHH
Q 014304 25 LWQNLVRMGFLGEALVTAGAGLLSSFS-P---NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFS-SFW 98 (427)
Q Consensus 25 ~~~~GRk~~l~~~~~~~~i~~~~~~~a-~---~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~-~~~ 98 (427)
.||+|||+.+.++.++..++......+ + +..++++.+++.|++.+.. +....++.|+.|+++||+..++.+ ..+
T Consensus 275 ~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~ 354 (418)
T TIGR00889 275 LKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCN 354 (418)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 369999999999999988887666553 2 3467888999999998876 445677899999999999999997 578
Q ss_pred HHhHhHHHHHHHHhcCC------CChhHHHHhhhHHHHHHH-HHhhcccCcc
Q 014304 99 TIGSVSEAIGAWIIMPR------LDWRWLLGLSSIPSFILL-AFLGFQPESP 143 (427)
Q Consensus 99 ~iG~~~~~~~~~~~~~~------~~WR~~~~~~~i~~~i~~-~~~~~lpESP 143 (427)
.+|..+++.++..+... .|||..|.+.++..++.. +..+++|||.
T Consensus 355 ~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 355 GFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 88998888877655433 579999988877766543 4455677774
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-07 Score=93.71 Aligned_cols=135 Identities=19% Similarity=0.168 Sum_probs=99.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccc
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
..+..++..+|.++.|.++||+|||+.+..+..+..++.+..++..+-+...+.=++.+++..+.....+++.+|+++++
T Consensus 124 ~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~ 203 (521)
T KOG0255|consen 124 QSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK 203 (521)
T ss_pred HHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc
Confidence 34445667788999999999999999999988888777665555444444444456666777778889999999999999
Q ss_pred hhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.|+.+..+ ....+.++.+.|....++...|- ..+++.....++..++ .+++||++
T Consensus 204 ~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr--~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 204 QRGLALTL-GGFFFVGGLMLPAGAAYITRDWR--WLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHH-HHccCcCh
Confidence 99999999 88888899998888887777432 2334444444444333 66667865
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=89.08 Aligned_cols=111 Identities=14% Similarity=-0.064 Sum_probs=69.3
Q ss_pred HHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHhhhhHhHHhhccccCccch--hhHHHH
Q 014304 287 LLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQSNILTT-GLLFGARMCVMGAFTVSLIYAAEIYPTSV--RSTGAG 362 (427)
Q Consensus 287 ~~~~~~l~d~-~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ElfPt~~--R~~~~g 362 (427)
..++|++.|| +|||+.+..+.++.++.........+..... .......++.....+....+.+|.||.+. |..+.+
T Consensus 74 ~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~ 153 (500)
T PRK09584 74 VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT 153 (500)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence 3578999999 5999988877665554433333322221111 11111222222223456688999998653 456788
Q ss_pred HHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHH
Q 014304 363 AANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVV 397 (427)
Q Consensus 363 ~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~ 397 (427)
+.+...++|+.++|.+.+++.+..+....+.+.+.
T Consensus 154 ~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 154 MYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 88889999999999999988876654444554443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.2e-06 Score=79.12 Aligned_cols=121 Identities=13% Similarity=0.076 Sum_probs=95.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHHHHHhHhHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~ 105 (427)
|..|-|+++++..+...+...+..+.++...+-+.-+..|++...+.+-.+|+--..|+++--++.+......-+|..++
T Consensus 66 d~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s 145 (412)
T PF01770_consen 66 DYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFIS 145 (412)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999887778888666788777778888888888888877
Q ss_pred HHHHHHhc--CCCChhHHHHhhhHHHHHHHHHhhcccCcchhH
Q 014304 106 AIGAWIIM--PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYL 146 (427)
Q Consensus 106 ~~~~~~~~--~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L 146 (427)
++++-.+. ...+.+.++.+......+.++..+++|-.++=+
T Consensus 146 ~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~ 188 (412)
T PF01770_consen 146 SLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSL 188 (412)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 77765543 345677777776655555555556777766533
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-07 Score=90.98 Aligned_cols=137 Identities=19% Similarity=0.067 Sum_probs=84.6
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh-hcc-h-hHHHHHHHHHHHHHhhhhHhHHhhccccCc
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQS-N-ILTTGLLFGARMCVMGAFTVSLIYAAEIYP 353 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 353 (427)
.+..++..++..+.+.+.||+|||+.+..+.++..+....... ... + +...+.-++..++..........+.+|.+|
T Consensus 78 ~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~ 157 (481)
T TIGR00879 78 SIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAP 157 (481)
T ss_pred HHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCC
Confidence 3445667788889999999999999887766555443333222 111 1 112222222333334445667889999999
Q ss_pred cchhhHHHHHHHHHhhHhHhHHHHHH---HHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 354 TSVRSTGAGAANAMGRIGGMVCPLVA---VALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 354 t~~R~~~~g~~~~~~~~~~~~~p~~~---~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
++.|+++.++.+....+|.+++|.+. ..+.+..+-...+.+.+...++..+ ..++.||+.
T Consensus 158 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~l~~~~ 220 (481)
T TIGR00879 158 KALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL-GLFFLPESP 220 (481)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCCh
Confidence 99999999999999999999999876 3221222222344443444444433 334446763
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-06 Score=83.82 Aligned_cols=329 Identities=14% Similarity=0.090 Sum_probs=175.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchh------HH--HHHHHHHHhhhccccchhhhh-hhhhccCCCcchhHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPN------YI--TLITLRCLVGVGLGSGHVFLS-WFLEFVPPSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~------~~--~l~v~R~l~G~g~G~~~~~~~-~~~E~~p~~~Rg~~~~~~~~ 96 (427)
||.|-|.+.+++..+..+|..+-..+.. +. ....+..+.+.+--......+ ...-|+|+++|..+.++-..
T Consensus 104 dk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~ 183 (480)
T KOG2563|consen 104 DKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVM 183 (480)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHh
Confidence 6999999999999999999998765532 22 455666666665332222222 23456899999998888777
Q ss_pred HHHHhHhHHHHHHHHhcC------CCChhHH--HHhhhHHHHH-HHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcC
Q 014304 97 FWTIGSVSEAIGAWIIMP------RLDWRWL--LGLSSIPSFI-LLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNK 167 (427)
Q Consensus 97 ~~~iG~~~~~~~~~~~~~------~~~WR~~--~~~~~i~~~i-~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~ 167 (427)
.-.+|..++.++..++.+ ...|-.. ++..+..+.+ +.+..+..+|-|+.= ...+.+.
T Consensus 184 ~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP-----ps~s~~~--------- 249 (480)
T KOG2563|consen 184 GNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP-----PSASQAA--------- 249 (480)
T ss_pred cchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CchhHhh---------
Confidence 777777776665544433 2357774 4422222222 222222223322210 0000000
Q ss_pred CCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014304 168 TKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 247 (427)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 247 (427)
+++.+-.+..+.+++.+ +.++....+......+|++...+
T Consensus 250 -------------------------------------~~~~~f~~si~~~~~n~---~F~il~~~ygi~~g~F~~l~~~l 289 (480)
T KOG2563|consen 250 -------------------------------------LQDASFPKSIKSCFKNR---QFIILAICYGIGLGLFNSLSTLL 289 (480)
T ss_pred -------------------------------------hhcCcHHHHHHHHHcCc---cHHHHHHHHhhhHHHHHHHHHHh
Confidence 00000112444455432 22333333334444555554433
Q ss_pred H-HhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhCh-hHHHHHHHHHHHHHHHHHH-hh---c
Q 014304 248 S-ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR-KLSITIMFTLSCLFLLPLV-TY---Q 321 (427)
Q Consensus 248 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GR-R~~~~~~~~~~~~~~~~~~-~~---~ 321 (427)
. .+.-.+ + ..... .....+..+.+.+|+++++.+.||... |...++.+....+....+. .. .
T Consensus 290 ~~~l~~sg-------Y---~~~~a--G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~ 357 (480)
T KOG2563|consen 290 NLALCPSG-------Y---EGVFA--GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLG 357 (480)
T ss_pred hhcccccc-------C---Ccccc--chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3 221100 0 00111 122334456677888999999999865 4444444444333321111 11 1
Q ss_pred chhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc----hhHHHHHHHH
Q 014304 322 SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH----QMTAVVLLVV 397 (427)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~----~~~~~~~~~~ 397 (427)
+.++.........++..+..++..-+..|.-=+..-++..|+.+..+++-+++-.++.....+..+ ....-+....
T Consensus 358 ~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 437 (480)
T KOG2563|consen 358 DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTV 437 (480)
T ss_pred ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHH
Confidence 122222222233344455556667778888445555677799999999999998888887766544 2233455556
Q ss_pred HHHHHHHHHhhccccCCCCcccc
Q 014304 398 VIVTSILSVMLIPFETKGQELSD 420 (427)
Q Consensus 398 ~~~i~~~~~~~l~pEtk~~~l~e 420 (427)
.+.+..+++.++.|+-+.+..|+
T Consensus 438 ~~~l~~~lva~~r~~y~R~~~e~ 460 (480)
T KOG2563|consen 438 SALLGAILVAFFRPDYRRLRAEA 460 (480)
T ss_pred HHHHHHHHHhhhhhhHHhHhhhh
Confidence 66666677777777665555443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.7e-07 Score=87.33 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=101.9
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhH
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
.+...++=++.|.++||.+.|..+..++++++++.+.+.+..+-....++..+...+-...++.+....+.-||++-||+
T Consensus 74 ~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~ 153 (448)
T COG2271 74 SITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGT 153 (448)
T ss_pred HHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCc
Confidence 34455666788999999999999999999999888877765433333344444555555677889999999999999999
Q ss_pred HHHHHHHHhhHhHhHHHHHH--HHHHhhcchhHHHHHHHHHHHHHHHHHhhcc---ccCCCCcccccc
Q 014304 360 GAGAANAMGRIGGMVCPLVA--VALVANCHQMTAVVLLVVVIVTSILSVMLIP---FETKGQELSDTV 422 (427)
Q Consensus 360 ~~g~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~---pEtk~~~l~e~~ 422 (427)
-.++=++..++||.+.|.+. ..+....+-...+++=+++.++.+++.+++. ||+.|.+--|+.
T Consensus 154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~ 221 (448)
T COG2271 154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEY 221 (448)
T ss_pred eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHh
Confidence 99999999999999998777 5555443323445555555555555555443 566665544433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-06 Score=87.99 Aligned_cols=110 Identities=11% Similarity=-0.081 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhhhhHhHHhhccccCccch--hhHH
Q 014304 285 PGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQS-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV--RSTG 360 (427)
Q Consensus 285 ~g~~~~~~l~d~-~GRR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~--R~~~ 360 (427)
....++|++.|| +|||+++..+..+..+..+......+ .....+.......+.....+....+.+|.||++. |..+
T Consensus 65 ~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~ 144 (489)
T PRK10207 65 GLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGA 144 (489)
T ss_pred HHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcc
Confidence 334578999999 99999998877666554443333222 1111111111112222233456789999999884 5778
Q ss_pred HHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHH
Q 014304 361 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVL 394 (427)
Q Consensus 361 ~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 394 (427)
.+..+...++|+.++|.+.+++.+..+-...|.+
T Consensus 145 ~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i 178 (489)
T PRK10207 145 FTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL 178 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 8999999999999999999988776653334444
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-06 Score=85.53 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhH--------HHHHHHHHHHHHhhhhHhHHhhccccCccc
Q 014304 284 IPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL--------TTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 284 ~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.+|.++.+.+.||+|||+.+..+....++.........+... ..+.-++..++....++....+.+|.+|++
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~ 149 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG 149 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence 467788999999999999998877665554444433222110 011111112222223455678999999999
Q ss_pred hhhHHHHHHHHHhhHhHhHHHHHHHHH
Q 014304 356 VRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~~~p~~~~~l 382 (427)
.|+++.++.....+++..+++.+...+
T Consensus 150 ~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 150 RKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888887777766555443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.1e-07 Score=89.78 Aligned_cols=136 Identities=18% Similarity=0.045 Sum_probs=83.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh--------cchhHHHHHH----HHHHHHHhhhhHhHH
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--------QSNILTTGLL----FGARMCVMGAFTVSL 345 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----~~~~~~~~~~~~~~~ 345 (427)
...++..++.++.+++.||+|||+.+..+..+.++..+..... .++......+ ++..++..+..+...
T Consensus 63 ~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~ 142 (479)
T PRK10077 63 SALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSP 142 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHH
Confidence 4456677888999999999999999887665544333322210 0111111111 222333444556788
Q ss_pred hhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHh--------hcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 346 IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA--------NCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 346 ~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~--------~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.+.+|.+|++.|+++.|+......+|..+++.+...+.. ..+-...+.+.+...++..+..+ +.||+.
T Consensus 143 ~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~-~l~~s~ 218 (479)
T PRK10077 143 MYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY-FVPETP 218 (479)
T ss_pred HHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHH-cCCCCc
Confidence 899999999999999999988888888887765443321 12212344544445445444444 456864
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-06 Score=86.96 Aligned_cols=138 Identities=18% Similarity=0.106 Sum_probs=91.5
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---hhc--chhHHHHHHHHHHHHHhhhhHhHHhhccc
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---TYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAE 350 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 350 (427)
.....+..++-.+++|.++||+.||++++.+.....+....+. ... +.+......++..++.....+...++.+|
T Consensus 51 ~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~ 130 (524)
T PF05977_consen 51 QAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPE 130 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555667899999999999999887765543322222 111 22322333333334334444667899999
Q ss_pred cCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 351 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 351 lfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+.|.+.-..+.++.+...++...++|.+.+.++...+....+.+-++..++..++....+++.
T Consensus 131 lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~ 193 (524)
T PF05977_consen 131 LVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP 193 (524)
T ss_pred hccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 999999999999999999999999999999888877765556555554444444444444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.1e-06 Score=82.67 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=82.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh-c---chhHH-HHHHHHHHHHHhhhhHhHHhhccccC
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-Q---SNILT-TGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
+..+...+..+..|.+.||+|.|+.+..+.+..++..+..... . ++... ...-++..+. .+.+......+++.|
T Consensus 78 i~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf 156 (462)
T PRK15034 78 LPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFF 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC
Confidence 3444555566778999999999998877766655544443332 1 22211 1111222222 345667788899999
Q ss_pred ccchhhHHHHHHHHHhhHhHhHHHHHHHHHH-----hhcc-------------hhHHHHHHHHHHHHHHHHHhhcccc
Q 014304 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALV-----ANCH-------------QMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~-----~~~~-------------~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
|++.|+++.|+....+++|..+++.+.+.+. ...+ -....++++.+.+++.+..+++.++
T Consensus 157 p~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 157 PKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred CHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999998888888877766665433 1111 1123345666666665555555444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-06 Score=87.36 Aligned_cols=129 Identities=15% Similarity=0.023 Sum_probs=82.3
Q ss_pred hhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHhhhhHhHHhhccccCccchhhHH
Q 014304 282 AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLL-FGARMCVMGAFTVSLIYAAEIYPTSVRSTG 360 (427)
Q Consensus 282 ~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~ 360 (427)
....+..+.|+++||+|||+.+..+..+.++..+......+.+...... .+..++....+.....+..|.|| +.|+++
T Consensus 66 ~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a 144 (455)
T TIGR00892 66 VLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLA 144 (455)
T ss_pred HHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHH
Confidence 3455667889999999999988877655554444333322222111111 11112212122445567788886 789999
Q ss_pred HHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Q 014304 361 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 411 (427)
Q Consensus 361 ~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~p 411 (427)
.|+.+....+++.++|.+.+.+.+..+-..++.+.+++.+++.+..+++.|
T Consensus 145 ~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 145 NGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999988888777665556677777766655555444443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.3e-07 Score=90.84 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=89.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..++..++.++.|.++||+|||+.+..+.++.++..+......+.+...+.-++..++..+.....+.+.+|.+|.+.
T Consensus 134 s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~ 213 (505)
T TIGR00898 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ 213 (505)
T ss_pred HHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh
Confidence 34456677888999999999999999888776666555444433332222222233334444456778999999999999
Q ss_pred hhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 357 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
|+.+.++......+|.+++|.+...+.+ + ...+.+.++..++..+..+ +.||+
T Consensus 214 r~~~~~~~~~~~~~g~~~~~~~~~~~~~-w--r~~~~~~~i~~~~~~~~~~-~~~es 266 (505)
T TIGR00898 214 RAIVGTLIQVFFSLGLVLLPLVAYFIPD-W--RWLQLAVSLPTFLFFLLSW-FVPES 266 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhH-H--HHHHHHHHHHHHHHHHHHH-hcCCC
Confidence 9999999877777888888877554332 2 2345555666655555554 44675
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-06 Score=84.17 Aligned_cols=101 Identities=23% Similarity=0.209 Sum_probs=66.3
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcch-h---HHHHHH----HHHHHHHhhhhHhHHhhcccc
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN-I---LTTGLL----FGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~----~~~~~~~~~~~~~~~~~~~El 351 (427)
.++..+|.++.|++.||+|||+.+..+....++..+......+. . .....+ ++..++..+.++....+.+|.
T Consensus 73 ~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 152 (432)
T PRK10406 73 FLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEV 152 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHh
Confidence 34455888899999999999999988777665555444332111 0 111111 222233344567788999999
Q ss_pred CccchhhHHHHHHHHHhhHhHhHHHHHHH
Q 014304 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAV 380 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~~~p~~~~ 380 (427)
+|++.|+...++.......|.++++.+..
T Consensus 153 ~p~~~rg~~~~~~~~~~~~G~~~~~~~~~ 181 (432)
T PRK10406 153 AVEGRKGFYASFQYVTLIGGQLLALLVVV 181 (432)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988876666666666665433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=92.37 Aligned_cols=114 Identities=17% Similarity=0.081 Sum_probs=92.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+..+..++.++..+.+|...+++++++.|++.+.. +.......|..|+++||+..++.+....+|..+
T Consensus 274 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 353 (399)
T PRK05122 274 NRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI 353 (399)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999998888888888888888888888999999999998865 444556679999999999999999999999877
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcc
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ 139 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~l 139 (427)
++.+...+....||+..+.+.++..++..+...++
T Consensus 354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 76666565566799999988877766655444333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.1e-06 Score=83.69 Aligned_cols=111 Identities=12% Similarity=-0.005 Sum_probs=70.3
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---hhcchhHHHHH-HHHHHHHHhhhhHhHHhhccccC
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---TYQSNILTTGL-LFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
....+...++..+.+.+.||+|||+.+..+..+.++...... ...++...... ..+...+..........+..|.+
T Consensus 55 ~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~ 134 (402)
T TIGR00897 55 TLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNT 134 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhC
Confidence 344566778889999999999999998777665544432221 11122222111 11111111112233456678899
Q ss_pred ccchhhHHHHHHHHHhhHhH-hHHHHHHHHHHhhcc
Q 014304 353 PTSVRSTGAGAANAMGRIGG-MVCPLVAVALVANCH 387 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~-~~~p~~~~~l~~~~~ 387 (427)
|++.|+++.|+.+....+|. .++|.+..++.+..+
T Consensus 135 ~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 135 KQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999988885 578877776665544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.1e-06 Score=81.46 Aligned_cols=109 Identities=13% Similarity=-0.051 Sum_probs=71.5
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
....++...+..+.+.+.||+|||+.+..+.....+.........+.+......+...++.............+..|.+.
T Consensus 48 s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 127 (381)
T PRK03633 48 SSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN 127 (381)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34456667788899999999999998877766655444433332222222222222222222223333455668889999
Q ss_pred hhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 357 RSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
|+++.+..+....+|..++|.+.+.+.+.
T Consensus 128 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 128 RGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999888766543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-07 Score=90.47 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=90.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+.....+......++++...+++.|++.+++.|.. .....+..|..|+ +||...++.+....+|..+
T Consensus 277 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~ 355 (393)
T PRK15011 277 KRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWII 355 (393)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHH
Confidence 6999999887766665555444556678888889999999887764 3344567899986 4899999998889999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccC
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPE 141 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpE 141 (427)
++.++..+.+..+|+.++.+.+++.++.++..+++||
T Consensus 356 g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 356 AGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9988877777789999999888888777766666665
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.4e-06 Score=80.72 Aligned_cols=135 Identities=16% Similarity=0.020 Sum_probs=79.4
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhh
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITI-MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 358 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 358 (427)
.+...+...+.+.++||+|||+.+.. +.....+.........+.+.....-.....+.....+....+..|..|++.|+
T Consensus 43 ~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~ 122 (375)
T TIGR00899 43 AIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGRE 122 (375)
T ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchh
Confidence 34455666778999999999886543 44433333222222222221111111111111223344566778888888777
Q ss_pred HH--HHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 359 TG--AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 359 ~~--~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.+ .+.....+.+|..++|.+.+.+.+..+-...+.+.+.+.++..+...++.||.+
T Consensus 123 ~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 123 AVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred hHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 55 577777778899999988887776655445667777766666666555456644
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=88.56 Aligned_cols=131 Identities=14% Similarity=0.032 Sum_probs=81.4
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh----cchhHHH-HHHHHHHHHHhhhhHhHHhhccccCc
Q 014304 279 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY----QSNILTT-GLLFGARMCVMGAFTVSLIYAAEIYP 353 (427)
Q Consensus 279 ~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ElfP 353 (427)
..+...++.++.|.++||+|||+.+..+.+..++..+..... .++.... ..-.+..++....++....+.+|.+|
T Consensus 73 ~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 152 (467)
T PRK09556 73 FSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTP 152 (467)
T ss_pred HHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcC
Confidence 345556778889999999999999877766555444333221 1222111 11122223323345667789999999
Q ss_pred cchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhc-c--hhHHHHHHHHHHHHHHHHHhhc
Q 014304 354 TSVRSTGAGAANAMGRIGGMVCPLVAVALVANC-H--QMTAVVLLVVVIVTSILSVMLI 409 (427)
Q Consensus 354 t~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~-~--~~~~~~~~~~~~~i~~~~~~~l 409 (427)
++.|+++.|+....+.+|+.+++.+..++.... . -...+.+.+.+.++..+..+++
T Consensus 153 ~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 153 RRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred ccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887766555432 1 1123444455554444444444
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-05 Score=76.94 Aligned_cols=297 Identities=16% Similarity=0.109 Sum_probs=163.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc---hhhhhhhhhccCCCcchhHHHHHHHHHHHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG---HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 102 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~---~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~ 102 (427)
|+||||..+.+..+...+..+...+.. +.+++ +.|+.-|.. ....+|++..+..++|....++...++..|.
T Consensus 87 D~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~ 161 (463)
T KOG2816|consen 87 DRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGL 161 (463)
T ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHH
Confidence 599999999999999999998888877 33333 666654432 2456788899999999999999999888888
Q ss_pred hHHHHHHHHhcCCCChhHHHHhhhHHHHHHH-HHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccccccccc
Q 014304 103 VSEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 181 (427)
Q Consensus 103 ~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~ 181 (427)
.+++.++.......+--.++.+.+...++.. +.+.++|||-+- +.+ +++ ..++.
T Consensus 162 ~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~-~~~---------~~~~~------------ 216 (463)
T KOG2816|consen 162 VIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KER-SDA---------TLREL------------ 216 (463)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccc-ccc---------ccccc------------
Confidence 8888777766555667777888777776654 446688998751 111 100 00000
Q ss_pred CCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCCCCC
Q 014304 182 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD-TRCRSP 260 (427)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~-~~~~~~ 260 (427)
+..... .. ... ..+..+.+.+.+|..+.+....+ +.+ .+...... .. .-.
T Consensus 217 ~~~~~~------~~----------~~~---~~~~~~~~~~~~r~~l~l~l~~~---~~~------~~~~~~~~~~~-~~y 267 (463)
T KOG2816|consen 217 TPGSLD------SS----------HVA---DAFQSLTKVGPDRLLLLLLLVAF---LSS------LPEAGGASDVL-LLY 267 (463)
T ss_pred CCCccc------ch----------hhh---hhhhhhcccCCCccchHHHHHHH---HHH------HHHhcCceeEE-EEE
Confidence 000000 00 000 01111122222222222222111 011 01110000 00 000
Q ss_pred CccCCCCCChhHHH-HHHHHHhhhhhHHHHHH-HHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHh
Q 014304 261 LMFSHHPQDANLYI-DEFITSLAEIPGLLLAA-ILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVM 338 (427)
Q Consensus 261 ~~~~~~~~~~~~~~-~~~i~~~~~~~g~~~~~-~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (427)
+....+- +.+.+- ........+..+.++.. .+...+|-|+....+...-.+.....++..+.|..... .....+..
T Consensus 268 l~~~f~w-~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~-~v~~~~~~ 345 (463)
T KOG2816|consen 268 LKAKFGW-NKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAA-GVVVALAG 345 (463)
T ss_pred EeeecCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHH-HHHHHhhc
Confidence 0001111 111121 12233444555666665 67777888886655555444444444444444432111 11112223
Q ss_pred hhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHH
Q 014304 339 GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 339 ~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~ 383 (427)
........+.+-+-+++-+++..++...+..+.++++|.+..-+.
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 344566778888889999999999999999999999998776553
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-07 Score=85.43 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=75.4
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---HHhhhhHhHHhhccccCccch
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARM---CVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ElfPt~~ 356 (427)
++.+++.+...|.++||.|||..+..+.+...++....+...+- . + .....+ ...+-.++..++.+|++|.+.
T Consensus 78 ~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F-~--a-fv~aR~l~Gi~kgnl~v~rAiisdV~sek~ 153 (451)
T KOG2615|consen 78 SILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF-A--A-FVLARFLGGIFKGNLSVIRAIISDVVSEKY 153 (451)
T ss_pred HHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH-H--H-HHHHHHhhhhccCchHHHHHHHHhhcChhh
Confidence 45677788888999999999999988877776654443332211 1 1 111121 223445788999999999999
Q ss_pred hhHHHHHHHHHhhHhHhHHHHHHHHHHh
Q 014304 357 RSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p~~~~~l~~ 384 (427)
|+.+++.......+|-+++|.+.+++..
T Consensus 154 r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 154 RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999999888765
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-07 Score=92.29 Aligned_cols=108 Identities=9% Similarity=-0.039 Sum_probs=88.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHH-HHHHHHHhHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~iG~~ 103 (427)
||+|||+.+..+.++..++.++.++++|.+++++.+++.|++.+.. .....+..|..|++.|+...+. .+....+|.+
T Consensus 287 dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ 366 (420)
T PRK09528 287 NRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAV 366 (420)
T ss_pred HHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHH
Confidence 6999999999999999998888889999999999999999987765 3455677899999999876544 5667788888
Q ss_pred HHHHHHHHhcCCCChhHHHHhhhHHHHHHH
Q 014304 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILL 133 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~ 133 (427)
+++.+...+.+..|||..|.+.++..++..
T Consensus 367 ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~ 396 (420)
T PRK09528 367 FLSTLAGNLYDSIGFQGTYLILGGIVLLFT 396 (420)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 888877777667799999988776655443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-05 Score=79.30 Aligned_cols=108 Identities=18% Similarity=0.021 Sum_probs=73.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh--hcchhH-HHHHHHHHHHHHhhhhHhHHhhccccC
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQSNIL-TTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
.....++..++.+..+++.||+|||+.+..+..+.++....... ..++.. .....++..++..........+..|+.
T Consensus 44 ~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~ 123 (410)
T TIGR00885 44 QSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG 123 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHC
Confidence 34445666777888999999999999998877665544333221 112221 122222333333333455677888899
Q ss_pred ccchhhHHHHHHHHHhhHhHhHHHHHHHHHH
Q 014304 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~ 383 (427)
|++.|++..++.+....+|+.++|.+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 124 PESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998877664
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-05 Score=77.13 Aligned_cols=133 Identities=20% Similarity=0.150 Sum_probs=89.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh--hcchhHHHHHHHHHHHH-HhhhhHhHHhhccccC
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQSNILTTGLLFGARMC-VMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Elf 352 (427)
..+..+.+.+.-+..+++.||+|-|+....+.++..+-++.... ..++.+ ..+.+..... ..+.++....++++-|
T Consensus 55 ~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~-~ll~~gll~G~~GasFav~m~~~s~~f 133 (417)
T COG2223 55 VAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTW-QLLVIGLLLGLAGASFAVGMPNASFFF 133 (417)
T ss_pred HHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchH-HHHHHHHHHhcccceehcccccccccC
Confidence 34455555555677899999999999887777665554444433 222221 1222222222 2345678889999999
Q ss_pred ccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHHHHhhcc
Q 014304 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH---QMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~---~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
|++.++++.|+.. .|++|..+..++.|.+....+ -.....++....+++.+..++..
T Consensus 134 P~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 134 PKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred ChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999988888776655 23345566666666666665553
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.5e-07 Score=88.55 Aligned_cols=110 Identities=15% Similarity=0.032 Sum_probs=93.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+..+..+..++.++..++++...+++++++.|++.+.. +.......|..|+++||+..++.+....+|..+
T Consensus 274 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i 353 (392)
T PRK12382 274 DRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV 353 (392)
T ss_pred HhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999988888888888888888888999999999998865 445566789999999999999999999999998
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHHH
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 135 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~ 135 (427)
++.+...+....||+..+.+.++..++....
T Consensus 354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 384 (392)
T PRK12382 354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIV 384 (392)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 8888777776789999999888776665443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-05 Score=80.20 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=83.5
Q ss_pred hHHHHHHHHHhhh-----ChhHH-HHHHHHHHHHHHHHHHhhc--chh-HHHHHHHHHHHHHhhhhHhHHhhccccCccc
Q 014304 285 PGLLLAAILVDTA-----GRKLS-ITIMFTLSCLFLLPLVTYQ--SNI-LTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 285 ~g~~~~~~l~d~~-----GRR~~-~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.+.++.+.++||+ |||+. +..+.+..+.+...+.+.. ++. .......+..++.........++.+|.+|.+
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 4667889999999 99985 4455554444443333321 221 2222222233333344456789999999999
Q ss_pred hhhHHHHHHHHHhhHhHhHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 356 VRSTGAGAANAMGRIGGMVCPLVAVALVA-NCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~~~p~~~~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.|+++.++.....++|..+++.+..++.+ ..+-...+.+.+.+.++..+..++ .||+.
T Consensus 140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~ 198 (491)
T PRK11010 140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT 198 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 99999999999999999999988887776 333334566666666666555544 46764
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-05 Score=79.15 Aligned_cols=139 Identities=9% Similarity=-0.017 Sum_probs=82.8
Q ss_pred HHHHHhhhhhHHHHHHHHHh----hhChhHHHHHH-HHHHHHHHHHHHhhcc-------------hhH----HHHHHHHH
Q 014304 276 EFITSLAEIPGLLLAAILVD----TAGRKLSITIM-FTLSCLFLLPLVTYQS-------------NIL----TTGLLFGA 333 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d----~~GRR~~~~~~-~~~~~~~~~~~~~~~~-------------~~~----~~~~~~~~ 333 (427)
..+..+.+.+...+.|.++| |+|||+.++.. .....+.+..+....+ ... ....+.+.
T Consensus 45 ~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ll 124 (477)
T TIGR01301 45 WLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWIL 124 (477)
T ss_pred HHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHH
Confidence 34455666677778899999 59999988664 3333333333322111 011 11111222
Q ss_pred HHHHhhhhHhHHhhccccCccchh--hHHHHHHHHHhhHhHhHHHHHHHHH--Hhhc-------------chhHHHHHHH
Q 014304 334 RMCVMGAFTVSLIYAAEIYPTSVR--STGAGAANAMGRIGGMVCPLVAVAL--VANC-------------HQMTAVVLLV 396 (427)
Q Consensus 334 ~~~~~~~~~~~~~~~~ElfPt~~R--~~~~g~~~~~~~~~~~~~p~~~~~l--~~~~-------------~~~~~~~~~~ 396 (427)
.++........-++.+|+.|++.| +.+.++.+.+..+|+++++.+.++. .+.. +....|.+-+
T Consensus 125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a 204 (477)
T TIGR01301 125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDI 204 (477)
T ss_pred HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHH
Confidence 233333445678899999999876 4688888888889998888765533 1110 1123455555
Q ss_pred HHHHHHHHHHhhccccCC
Q 014304 397 VVIVTSILSVMLIPFETK 414 (427)
Q Consensus 397 ~~~~i~~~~~~~l~pEtk 414 (427)
++.+++.+.+.+..+|..
T Consensus 205 ~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 205 ILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHeeeeeccC
Confidence 666677777777777864
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-05 Score=90.32 Aligned_cols=108 Identities=14% Similarity=-0.024 Sum_probs=73.5
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH--h-hcchhHHHHHHHHHHHHHhhhhHhHHhhccccCcc
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--T-YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
+..+...++.+++|.++||+|||+++..+.++..+..+... . ..+.+...+..++..++.....+..+.+.+|++|.
T Consensus 55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 134 (1146)
T PRK08633 55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK 134 (1146)
T ss_pred HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc
Confidence 33455667778899999999999998876654433322211 1 11212222222222333333445678899999999
Q ss_pred chhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 355 SVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 355 ~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
+.|+++.|+......+|.+++|.+.+++...
T Consensus 135 ~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 135 ENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988877654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-05 Score=89.35 Aligned_cols=135 Identities=15% Similarity=-0.039 Sum_probs=82.7
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHH--HHHHHHhh-cchhHHHHHHHHHHHHHhhhhHhHHhhccccCccc
Q 014304 279 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL--FLLPLVTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 279 ~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
..+...+...++|.++||+|||+++......... ....+... .+.+...+..++...+.....+....+..|++|.+
T Consensus 61 ~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~ 140 (1140)
T PRK06814 61 FILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD 140 (1140)
T ss_pred HHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc
Confidence 3445556677889999999999976332221111 11111111 22222222333333334445567899999999999
Q ss_pred hhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.|+.+.|+.++...+|..++|.+.+.+....+....++..+.+.+++.++.+++ ||++
T Consensus 141 ~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 198 (1140)
T PRK06814 141 ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFI-PKTG 198 (1140)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhC-CCCC
Confidence 999999999999999999999999988776543333322233333444444444 4543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=80.39 Aligned_cols=103 Identities=15% Similarity=0.057 Sum_probs=68.0
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchh----HHHHHH----HHHHHHHhhhhHhHHhhcccc
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNI----LTTGLL----FGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~El 351 (427)
.+...+|.++.|++.||+|||+.+..+....++..+...+..+.. +....+ ++..++..+.++....+.+|.
T Consensus 74 ~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~ 153 (438)
T PRK09952 74 FLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVES 153 (438)
T ss_pred HHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHh
Confidence 344567788899999999999999887776666555444322211 111112 222233334455667899999
Q ss_pred CccchhhHHHHHHHHHhhHhHhHHHHHHHHH
Q 014304 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l 382 (427)
+|++.|+...+.......+|..+++.+...+
T Consensus 154 ~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l 184 (438)
T PRK09952 154 APKNKKAFYSSGVQVGYGVGLLLSTGLVSLI 184 (438)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888777777777776555443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-06 Score=82.54 Aligned_cols=139 Identities=17% Similarity=0.094 Sum_probs=105.3
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch-h
Q 014304 279 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV-R 357 (427)
Q Consensus 279 ~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~-R 357 (427)
..+.++..+-+.|.++||+|+|..+.+++.++....+..++..+.....+.=.+-......++....++.++.||.+. |
T Consensus 115 kA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er 194 (464)
T KOG3764|consen 115 KALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNER 194 (464)
T ss_pred HHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhh
Confidence 356677777889999999999999999988887776666554333211111111122333345567889999999976 6
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~ 417 (427)
++++|++-.+..+|-.++|-+.+.+.+..|+..+|++++.++++.....++..+.||..+
T Consensus 195 ~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 195 GSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred hHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 999999999999999999999888888888889999999999988888887775555444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-05 Score=77.94 Aligned_cols=122 Identities=13% Similarity=-0.002 Sum_probs=78.5
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhH
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
.++...+..+.+.+.||+|||+.+..+..+.++.........+.......-++..++..........+..|.|| +.|+.
T Consensus 54 ~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~ 132 (393)
T PRK09705 54 VVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPL 132 (393)
T ss_pred HHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchh
Confidence 44556677888999999999999998887776666554443322221222222223333334455667888898 67999
Q ss_pred HHHHHHHHhhHhHhHHHHHHHHHHhhcchh-HHHHHHHHHHHHH
Q 014304 360 GAGAANAMGRIGGMVCPLVAVALVANCHQM-TAVVLLVVVIVTS 402 (427)
Q Consensus 360 ~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~~~~~~i~ 402 (427)
+.|........|+.+++.+.+.+.+....+ ..+.+++...+++
T Consensus 133 ~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 133 VMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999888888888888888776653222 2333444444333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.7e-06 Score=79.42 Aligned_cols=100 Identities=21% Similarity=0.223 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchh----HHHHHHHHHH----HHHhhhhHhHHhhccccCcc
Q 014304 283 EIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNI----LTTGLLFGAR----MCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 283 ~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~ElfPt 354 (427)
..++.++.|++.||+|||+.+..+.++.++.........+.. .....++... ++.....+....+.+|.+|.
T Consensus 48 ~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~ 127 (394)
T TIGR00883 48 RPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP 127 (394)
T ss_pred hhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc
Confidence 345778899999999999998887766555444333322111 1011111111 22222344567899999999
Q ss_pred chhhHHHHHHHHHhhHhHhHHHHHHHHH
Q 014304 355 SVRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 355 ~~R~~~~g~~~~~~~~~~~~~p~~~~~l 382 (427)
+.|+...++......+|.+++|.+...+
T Consensus 128 ~~r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 128 GKRGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888988888766544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.9e-05 Score=72.89 Aligned_cols=134 Identities=13% Similarity=0.002 Sum_probs=92.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..++..++..+...+.||+.||++++....+..+.....+...+-+...+.=.+..+.....|++...+.+++-|++.|
T Consensus 56 ~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~ 135 (394)
T COG2814 56 AYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKR 135 (394)
T ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch
Confidence 34556667778888999999999999886665554444333322222111111222334455678889999999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 411 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~p 411 (427)
+++.++...-..++.+++.=+..++-+.++=..+|...+.+.+++.+......|
T Consensus 136 ~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 136 GRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999988777777777545555555554346788888888888777777777
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-05 Score=76.02 Aligned_cols=129 Identities=20% Similarity=0.168 Sum_probs=80.3
Q ss_pred HHHHHHHHhhh-----ChhHHH-HHHHHHHHHHHHHHHhhc--chh-HHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 287 LLLAAILVDTA-----GRKLSI-TIMFTLSCLFLLPLVTYQ--SNI-LTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 287 ~~~~~~l~d~~-----GRR~~~-~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
..+.+.++||+ |||+.+ ..+.+..++....+.+.. .+. ......++...+..........+.+|.+|++.|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 56889999997 899875 444444444433333321 111 111111122222223334567889999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhhcc--------hhHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVANCH--------QMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~--------~~~~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
+.+.|+......+|.+++|.+...+.+..+ -...+++.+++.+++.+...+..||++.
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~ 183 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQE 183 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 999999998889999999988877765544 2344556666555655555545567543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.3e-05 Score=76.28 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc-----chhHHHHH-HHHHHHHHhhhhHhHHhhccccCccchhhH
Q 014304 286 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-----SNILTTGL-LFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 286 g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
..+++|++.||+|||+.+.++.+..++..+...... .+.+...+ ..+...+....+........+.|| +.|++
T Consensus 77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~ 155 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA 155 (591)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence 345689999999999999887766655444333321 12221111 112222222233455667788897 67999
Q ss_pred HHHHHHHHhhHhHhHH-HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Q 014304 360 GAGAANAMGRIGGMVC-PLVAVALVANCHQMTAVVLLVVVIVTSILSVML 408 (427)
Q Consensus 360 ~~g~~~~~~~~~~~~~-p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 408 (427)
+.|+......+|+.+. |.....+.+.+ ...+++.+.+.++..++...
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~~~~--~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFSDNT--SAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998754 44444333222 23344555555444344433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.003 Score=61.04 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhccccch-hhhhhhhhccCCCcchhHHHHHHHHHHHhHhHHHHHHHHhcCCCC-hhHHHHhhh
Q 014304 56 TLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGLSS 126 (427)
Q Consensus 56 ~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~~~~~~~~~~~~~-WR~~~~~~~ 126 (427)
...+.-.+.|+|.+... ...++..+.+|+++|++..++...+.-+|.++++.........++ =|....+..
T Consensus 91 ~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~ 163 (403)
T PF03209_consen 91 LAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG 163 (403)
T ss_pred HHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence 35566677777777664 446778899999999999999999999999998887665544433 344434433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00013 Score=73.04 Aligned_cols=108 Identities=15% Similarity=0.011 Sum_probs=71.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH--hhcchhH-HHHHHHHHHHHHhhhhHhHHhhccccC
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--TYQSNIL-TTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
.....++..++.++.+.++||+|||+.+..+..+..+..+... ...++.. .....++..++..........+..|..
T Consensus 67 ~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~ 146 (438)
T PRK10133 67 QSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG 146 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 3445566777888999999999999999887766554443321 1122222 222223333333334455677777888
Q ss_pred ccchhhHHHHHHHHHhhHhHhHHHHHHHHHH
Q 014304 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~ 383 (427)
|.+.|....++.+....+|..++|.+...+.
T Consensus 147 ~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 147 PESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877889999998899999987765443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00031 Score=69.19 Aligned_cols=107 Identities=22% Similarity=0.152 Sum_probs=89.7
Q ss_pred hccchhHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCc--chhHHHHHHHHHHHh
Q 014304 27 QNLVRMGFLGEALVTAGAGLLSSFSP--NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTIG 101 (427)
Q Consensus 27 ~~GRk~~l~~~~~~~~i~~~~~~~a~--~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~iG 101 (427)
-.|+|+++..+.+++.+|-++.+... +...++++=.+.++|.|.. +-+++++.|..|++. |-...+++....++|
T Consensus 88 ~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiG 167 (498)
T COG3104 88 VLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIG 167 (498)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehH
Confidence 38999999999999999999999884 7889999999999999987 556778888888743 444567778888999
Q ss_pred HhHHHHHHHHhcCCCChhHHHHhhhHHHHHHH
Q 014304 102 SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL 133 (427)
Q Consensus 102 ~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~ 133 (427)
+++++.+...+....+|...|..+++-..+.+
T Consensus 168 sl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl 199 (498)
T COG3104 168 SLIAPIITGLLAINYGWHVGFGLAAVGMIIGL 199 (498)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 99999988888888899999988876554433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-05 Score=76.73 Aligned_cols=134 Identities=16% Similarity=0.092 Sum_probs=77.2
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+++++|.++++.++||+|||..+..+.+...+......... ........=++.+.......+....|.+|+-|++.
T Consensus 70 ~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~ 149 (485)
T KOG0569|consen 70 FIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL 149 (485)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh
Confidence 456778889999999999999888776665544443333211 11111111111222222234567889999999999
Q ss_pred hhHHHHHHHHHhhHhHhHHH-HHHHHHHhhcchhHHHHH-HHHHHHHHHHHHhhccccCC
Q 014304 357 RSTGAGAANAMGRIGGMVCP-LVAVALVANCHQMTAVVL-LVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p-~~~~~l~~~~~~~~~~~~-~~~~~~i~~~~~~~l~pEtk 414 (427)
||....+......+|-.++. .-.+.++.+-.. ++++. +..+..+..++.+.+.||+-
T Consensus 150 RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~-W~~l~~~~~i~~~~~l~~l~~~PESP 208 (485)
T KOG0569|consen 150 RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDL-WPYLLAFPLIPALLQLALLPFLPESP 208 (485)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcc-hHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99998888877777777773 333434333222 33332 22232333344444557864
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.6e-05 Score=79.77 Aligned_cols=137 Identities=22% Similarity=0.155 Sum_probs=85.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccc
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....++...|.++++.++|++|||..+..+.+...+-.+..+...+.....+.=++..++..+...+..+|.+|+-|++
T Consensus 95 ~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~ 174 (513)
T KOG0254|consen 95 TSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH 174 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChh
Confidence 34556778889999999999999999887766554433333333222222222223333444445567899999999999
Q ss_pred hhhHHHHHHHHHhhHhHhHHHHHHHHHHhhc-chh-HHHHHHHHHHHHHHHHHhhccccCC
Q 014304 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQM-TAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~-~~~-~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
.|+.-.+.......+|-.++ ++.++..++. ..+ ..+.+....+++..+. .++.||+-
T Consensus 175 ~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 175 IRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 99999999888877666555 5555444432 012 2333444444555555 55557754
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.5e-05 Score=73.29 Aligned_cols=108 Identities=13% Similarity=-0.035 Sum_probs=67.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+..+...++..+.+++.||+|||+.+..+....++..... ...+.+......+...++..........+..|.+| +.
T Consensus 42 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~ 119 (355)
T TIGR00896 42 ALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR 119 (355)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch
Confidence 34455667788899999999999998877655443333222 21222211111122222222223344556788887 57
Q ss_pred hhHHHHHHHHHhhHhHhHHHHHHHHHHhhc
Q 014304 357 RSTGAGAANAMGRIGGMVCPLVAVALVANC 386 (427)
Q Consensus 357 R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~ 386 (427)
|+++.|+.+....+|..++|.+.+.+.+..
T Consensus 120 ~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 149 (355)
T TIGR00896 120 VGLMTGLYSMALMGGAALAAAATVPLAQHS 149 (355)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999988899999988877776543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.7e-05 Score=76.22 Aligned_cols=103 Identities=19% Similarity=0.123 Sum_probs=61.9
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhh
Q 014304 279 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 358 (427)
Q Consensus 279 ~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 358 (427)
..+....+..+.|.++|.+|||..++.+.++..+-.+.....++.....+...+..+. .+...+....++|+.|.+-|.
T Consensus 87 ~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~ 165 (599)
T PF06609_consen 87 WTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVG-AGVQELAALAISELVPNKWRG 165 (599)
T ss_pred HHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcccchhh
Confidence 3455566677889999999999998887665544333322212111111211121121 233345567789999999999
Q ss_pred HHHHHHHHHhhHhHhHHHHHHHHH
Q 014304 359 TGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 359 ~~~g~~~~~~~~~~~~~p~~~~~l 382 (427)
.+.++.....-+...++|.+...+
T Consensus 166 ~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 166 LGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred hHhHHHHHHHHhhhcccHHHHHHh
Confidence 988777655444555666665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.2e-06 Score=82.90 Aligned_cols=145 Identities=14% Similarity=-0.049 Sum_probs=92.3
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhh
Q 014304 279 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 358 (427)
Q Consensus 279 ~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~ 358 (427)
..+...+.+.++|++.||.+||.++.++..+-.+..++-.+..+-|...+.=.+...+-.+..++...++++.||...|+
T Consensus 77 f~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs 156 (493)
T KOG1330|consen 77 FIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRS 156 (493)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhh
Confidence 34556677889999999999999998877766655554444322232222212222233334457788999999999999
Q ss_pred HHHHHHHHHhhHhHhHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHhhccccCCCCccccccc
Q 014304 359 TGAGAANAMGRIGGMVCPLVAVALVANCHQ-MTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVD 423 (427)
Q Consensus 359 ~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l~e~~~ 423 (427)
++.++-+....+|+.++-....++-+..+. .+.+..-++++++++++..++.+|...+.-||..+
T Consensus 157 ~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~ 222 (493)
T KOG1330|consen 157 RVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG 222 (493)
T ss_pred HHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccccc
Confidence 999999999888776653222222111111 13455667777777777777777766544444443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00036 Score=68.95 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhhh-----ChhH-HHHHHHHHHHHHHHHHHhhc--chhHHHH-HHHHHHHHHhhhhHhHHhhccccCccc
Q 014304 285 PGLLLAAILVDTA-----GRKL-SITIMFTLSCLFLLPLVTYQ--SNILTTG-LLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 285 ~g~~~~~~l~d~~-----GRR~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
....+.+.++||+ |||+ .+..+....+++...+.... ++.+... ..++..++..........+.+|.+|++
T Consensus 47 ~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 126 (402)
T PRK11902 47 IFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE 126 (402)
T ss_pred HHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 4557789999999 8876 45565555554444444322 2222111 112222222333356788999999999
Q ss_pred hhhHHHHHHHHHhhHhHhHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
.|+++.++......+|..+++.+...+.+.. +-...+.+.+++.+++.+... ..||++.
T Consensus 127 ~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~-~~~e~~~ 186 (402)
T PRK11902 127 ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTL-WAPEPEV 186 (402)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCcc
Confidence 9999999999888889988888777776643 333455565665555544433 4466643
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00016 Score=71.29 Aligned_cols=136 Identities=14% Similarity=0.051 Sum_probs=72.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH-hhcchh--H-HHHHHHH----HHHHHhhhhHhHHh
Q 014304 275 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV-TYQSNI--L-TTGLLFG----ARMCVMGAFTVSLI 346 (427)
Q Consensus 275 ~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~-~~~~~~--~-~~~~~~~----~~~~~~~~~~~~~~ 346 (427)
...+..+...++..+.|+++||+|||+.+..+....++...... ....+. . ....... ..++.....+....
T Consensus 43 ~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 122 (396)
T TIGR00882 43 VFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEA 122 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Confidence 34455667777888999999999999988765443332222111 100110 0 0111111 11111112223333
Q ss_pred hccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 347 YAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 347 ~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+..|.- +.++...|.....+.+|..++|.+.+.+.+. +...++.+.+.+.++..++.+...||+
T Consensus 123 ~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 123 YIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI-DPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred HHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc-CchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 434432 2234456777888889999999887765443 444566666666666555555555554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00014 Score=71.85 Aligned_cols=129 Identities=13% Similarity=0.071 Sum_probs=84.1
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHH
Q 014304 281 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG 360 (427)
Q Consensus 281 ~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~ 360 (427)
.+..+..+..|++.||+|-|+.+..+.+..+++.++..+..+.....+.=++.+++-...+ ..+.++...||++-|+++
T Consensus 73 ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ra 151 (511)
T TIGR00806 73 YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRA 151 (511)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHH
Confidence 3445667889999999999999888777766665554442221111111122223333344 788999999999999999
Q ss_pred HHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHH--HHHHHHHHHHHHHhhcc
Q 014304 361 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVV--LLVVVIVTSILSVMLIP 410 (427)
Q Consensus 361 ~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~--~~~~~~~i~~~~~~~l~ 410 (427)
+|+.+....+|.++++.+...+....+.....+ +-.+...++.++.+++|
T Consensus 152 tsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 152 AAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999988887443222221111 22233346666777776
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.6e-05 Score=79.05 Aligned_cols=106 Identities=11% Similarity=0.097 Sum_probs=70.3
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc----------------------------c---------
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ----------------------------S--------- 322 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~----------------------------~--------- 322 (427)
.++..++.++.+++.||.|||+.+.++.++.++..+..+..+ +
T Consensus 78 ~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 157 (633)
T TIGR00805 78 EIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQ 157 (633)
T ss_pred hHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccc
Confidence 344556778889999999999988776655544333322210 0
Q ss_pred --------h--hHHHHHHHHHHH----HHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 323 --------N--ILTTGLLFGARM----CVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 323 --------~--~~~~~~~~~~~~----~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
. ......+++..+ +....+.....|..|.+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 158 CPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred cccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 0 001112222222 22234456789999999999999999999999999999999888777653
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.5e-05 Score=74.81 Aligned_cols=107 Identities=12% Similarity=-0.024 Sum_probs=87.8
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHH-HHHHHhH
Q 014304 25 LWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFS-SFWTIGS 102 (427)
Q Consensus 25 ~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~-~~~~iG~ 102 (427)
.||+|+|+.+.++.+...+..+..++++|.+++++.+++.|++.|.. +....|+.+. |+++|+...++++ ...++|.
T Consensus 264 ~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~ 342 (382)
T TIGR00902 264 FQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLI 342 (382)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999986 4556677777 9999998888876 4778899
Q ss_pred hHHHHHHHHhcCCCChhHHHHhhhHHHHHHH
Q 014304 103 VSEAIGAWIIMPRLDWRWLLGLSSIPSFILL 133 (427)
Q Consensus 103 ~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~ 133 (427)
.+++.++..+.+..|+ ..+.+.++.+++..
T Consensus 343 ~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 343 AIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 9999888887777787 44555555555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0055 Score=60.75 Aligned_cols=83 Identities=16% Similarity=-0.033 Sum_probs=62.2
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccch-hhhhhhhhccCCCcchhHHHHHHHHHHHhHh
Q 014304 25 LWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 25 ~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~ 103 (427)
.++.|-|+.+.++...+....+.--+ +|-+-+++.-.+.|+|.+... .-..|+.|.++++.+.+..++.=.....+.+
T Consensus 74 v~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li 152 (461)
T KOG3098|consen 74 VNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLI 152 (461)
T ss_pred HHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHH
Confidence 36899999999999998877765544 567778999999999988754 4467889999999988777664444444455
Q ss_pred HHHHH
Q 014304 104 SEAIG 108 (427)
Q Consensus 104 ~~~~~ 108 (427)
+++..
T Consensus 153 ~Ggi~ 157 (461)
T KOG3098|consen 153 IGGII 157 (461)
T ss_pred hhhHh
Confidence 55443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.7e-05 Score=73.16 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=66.6
Q ss_pred hccc-hhHHHHHHHHHHHHHHHh---hcch--hHHHHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 014304 27 QNLV-RMGFLGEALVTAGAGLLS---SFSP--NYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 27 ~~GR-k~~l~~~~~~~~i~~~~~---~~a~--~~~~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
|.|. |+.++.+.++..++.++= ...+ .-+.++++|++.|+|.|...+.=.|++..+-.+.|.++.+....+..+
T Consensus 97 k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vl 176 (488)
T KOG2325|consen 97 KTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVL 176 (488)
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHH
Confidence 5554 677888888888877754 2223 467899999999999998777778898888888888888888888888
Q ss_pred hHhHHHHHHHHh
Q 014304 101 GSVSEAIGAWII 112 (427)
Q Consensus 101 G~~~~~~~~~~~ 112 (427)
|.++++.+....
T Consensus 177 g~ilGp~~q~~f 188 (488)
T KOG2325|consen 177 GIILGPTIQLAF 188 (488)
T ss_pred HHHHhHHHHHHH
Confidence 888887765543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.002 Score=61.89 Aligned_cols=107 Identities=16% Similarity=0.050 Sum_probs=73.0
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH--hhcch-hHHHHHHHHHHHHHhhhhHhHHhhccccCcc
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--TYQSN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
....+.+.+.+.++++++|+|+|..+..++.+..+.+.... ..... ....+.+++...++..--...+.|.+.+.|+
T Consensus 56 aff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~ 135 (422)
T COG0738 56 AFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKP 135 (422)
T ss_pred HHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence 33445556677889999999999999888766654433322 11111 1222223333333222334668899999999
Q ss_pred chhhHHHHHHHHHhhHhHhHHHHHHHHHHh
Q 014304 355 SVRSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 355 ~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~ 384 (427)
+..+.-.++...++.+|++++|.+..+++.
T Consensus 136 ~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 136 ESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 988889999999999999999998887765
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00023 Score=71.02 Aligned_cols=138 Identities=20% Similarity=0.163 Sum_probs=99.2
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhH
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 359 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~ 359 (427)
++..++.+.+-|.++|++|||..+......+.+-...+.+.. ++... ...........++..+.|.+++-..+.|..
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~ 148 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSS 148 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheeeccchhHHHH
Confidence 444555666778999999999998887666554443333221 22222 111112223445678899999999999999
Q ss_pred HHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q 014304 360 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 420 (427)
Q Consensus 360 ~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l~e 420 (427)
..|+.+..-..+..++|.+..++....+....+.+-.+..+++.++..+..||+...+.++
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS 209 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence 9999999999999999999988887766656666666777888888888889987766554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.5e-07 Score=89.31 Aligned_cols=104 Identities=22% Similarity=0.196 Sum_probs=70.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHhhhhHhHHhhccccC
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---SNILTTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
.....++..+|+++.+++.||+|||+.+..+.....+..+...... +.+.....-++..++..+......+|..|.-
T Consensus 52 ~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~ 131 (451)
T PF00083_consen 52 TSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIA 131 (451)
T ss_pred HHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3445667788999999999999999988776665544444333322 2222112222233344445667899999999
Q ss_pred ccchhhHHHHHHHHHhhHhHhHHHHHH
Q 014304 353 PTSVRSTGAGAANAMGRIGGMVCPLVA 379 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~~~p~~~ 379 (427)
|++.|+...++.+....+|..++..+.
T Consensus 132 ~~~~R~~~~~~~~~~~~~G~~~~~~~~ 158 (451)
T PF00083_consen 132 PPKHRGFLSSLFQLFWALGILLASLIG 158 (451)
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999998888877777776665543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0002 Score=71.35 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=67.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHhhhccccc-hhhhhhhhhccC-------CCcchhHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFS-PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVP-------PSNRGMWMVIFSS 96 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a-~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p-------~~~Rg~~~~~~~~ 96 (427)
||+|||+.+.++..+..++.+...+. .+...+++..++.|++.|.. +...++..|..+ ++.+|...++.+.
T Consensus 282 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 361 (437)
T TIGR00792 282 KKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTF 361 (437)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHH
Confidence 59999999999888888777766655 35677788889999998875 445566667654 5678999999999
Q ss_pred HHHHhHhHHHHHHHHhc
Q 014304 97 FWTIGSVSEAIGAWIIM 113 (427)
Q Consensus 97 ~~~iG~~~~~~~~~~~~ 113 (427)
...+|..+++.+...+.
T Consensus 362 ~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 362 VRKLGQALAGFLVGLIL 378 (437)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888776655543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00083 Score=61.31 Aligned_cols=107 Identities=18% Similarity=0.125 Sum_probs=63.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh--hc----chhHHHHHH-HHHHHHHhhhhHhHHhhcc
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQ----SNILTTGLL-FGARMCVMGAFTVSLIYAA 349 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 349 (427)
...+++...| +++|.+.|+.|.|..+.++.+....--..+.. .. .+.+.+... ++..............-..
T Consensus 44 ~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~ 122 (250)
T PF06813_consen 44 TAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCV 122 (250)
T ss_pred HHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHH
Confidence 3445554444 78899999999999887766554332222222 11 111222211 1111111222345556677
Q ss_pred ccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 350 ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
+.||. -||++.|+.....-+++.+-..+...+.+.
T Consensus 123 ~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 123 RNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 99995 699999999999888887777666655544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.8e-05 Score=71.17 Aligned_cols=82 Identities=18% Similarity=0.086 Sum_probs=64.2
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhcc--hhHH--HHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 014304 25 LWQNLVRMGFLGEALVTAGAGLLSSFS--PNYI--TLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 25 ~~~~GRk~~l~~~~~~~~i~~~~~~~a--~~~~--~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
.||+|||+++.++.++++++.++.-.. +|.. .++.+|+..- |+..++++|.-|+.|...|+...+.-....-+
T Consensus 405 verlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis---g~fqvaYvYtPEVyPTavRatgvGtcSsmaRI 481 (528)
T KOG0253|consen 405 VERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS---GAFQVAYVYTPEVYPTAVRATGVGTCSSMARI 481 (528)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh---chheEEEEecCcccchhhhhcchhhhhhHHhh
Confidence 369999999999999999999876554 4433 3555665443 33356778888999999999988888888889
Q ss_pred hHhHHHHHH
Q 014304 101 GSVSEAIGA 109 (427)
Q Consensus 101 G~~~~~~~~ 109 (427)
|.+++++++
T Consensus 482 ggI~~p~iA 490 (528)
T KOG0253|consen 482 GGIFSPVIA 490 (528)
T ss_pred hhhhhhHHH
Confidence 999999887
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0024 Score=62.52 Aligned_cols=135 Identities=13% Similarity=0.036 Sum_probs=71.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHH-HHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHhhhhHhHHhhccccCcc
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIM-FTLSCLFLLPLVTYQSNILTT-GLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
.+..+...++..+.+.++||.|||....-. ...+...........++.+.. ....+...+.....+....+..+. .
T Consensus 46 ~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~ 123 (382)
T PRK11128 46 GAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--Q 123 (382)
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--H
Confidence 344555666777889999999995322111 111111111111122222221 211212222222333444555543 3
Q ss_pred chhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 355 SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 355 ~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+.|+.+.|.....+.+|..++|.+.+.+.+..+....++..+...++..+... +.||++
T Consensus 124 ~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~~ 182 (382)
T PRK11128 124 KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTIM 182 (382)
T ss_pred hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCCC
Confidence 45788888899999999999999999888776644555555544444433333 345543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0024 Score=62.65 Aligned_cols=123 Identities=20% Similarity=0.108 Sum_probs=71.2
Q ss_pred HHHHhhhChhHHHHHHH-HHHHHHHHHHH-h-hc-c-hhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHH
Q 014304 291 AILVDTAGRKLSITIMF-TLSCLFLLPLV-T-YQ-S-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAAN 365 (427)
Q Consensus 291 ~~l~d~~GRR~~~~~~~-~~~~~~~~~~~-~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~ 365 (427)
.+..||.|||+..+... +..+.+...+. . .. . ..+.....+...++....-.....+..|..+.+.++...+...
T Consensus 60 ~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~ 139 (390)
T TIGR02718 60 NWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQI 139 (390)
T ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHH
Confidence 45667789998764433 22222222222 1 11 1 1111222222222222223355668888888888888877776
Q ss_pred HHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccC
Q 014304 366 AMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 366 ~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
....+|..+++....++.+..+...++.+.+++.++..+..++++||+
T Consensus 140 ~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~ 187 (390)
T TIGR02718 140 AGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA 187 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 666888888887777777766655677777777766666666665553
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.8e-05 Score=72.31 Aligned_cols=117 Identities=12% Similarity=-0.039 Sum_probs=93.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPN--------YITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSF 97 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~--------~~~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~ 97 (427)
|++|||+..+..-.++.+..+..++..| ...+.+.-++.-+|.+++.- .+-+|.+|.+.||+.-++-...
T Consensus 373 d~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttf--ivpaE~FParvR~t~hGIsAA~ 450 (538)
T KOG0252|consen 373 DIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTF--IVPAEIFPARVRSTCHGISAAS 450 (538)
T ss_pred ehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeE--EeehhhchHHHhhhhhhHHHHh
Confidence 5899999999999999999999999887 34566777777777776532 2237999999999999998888
Q ss_pred HHHhHhHHHHHHHHhcC-----CCChhHHHHhhhHHHHHHHHHhhcccCcch
Q 014304 98 WTIGSVSEAIGAWIIMP-----RLDWRWLLGLSSIPSFILLAFLGFQPESPR 144 (427)
Q Consensus 98 ~~iG~~~~~~~~~~~~~-----~~~WR~~~~~~~i~~~i~~~~~~~lpESP~ 144 (427)
.-.|.++++........ .-+-|..+.+.+...++..++-.++|||.+
T Consensus 451 GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 451 GKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred ccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 88899888766544433 457899998888888777777778899875
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0003 Score=65.23 Aligned_cols=104 Identities=22% Similarity=0.248 Sum_probs=77.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHhhhccccc-hhhhhhhhhccCC-CcchhHHHHHHH-HHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPN--YITLITLRCLVGVGLGSG-HVFLSWFLEFVPP-SNRGMWMVIFSS-FWTI 100 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~--~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~-~~Rg~~~~~~~~-~~~i 100 (427)
||+|||+.+..+.....++.+..++.++ ...+++.|++.|++.|.. +....+..|+.|+ ++|+...+.... ...+
T Consensus 64 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (338)
T COG0477 64 DRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGAL 143 (338)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 4779998888887766666777777776 999999999999999865 5667888999998 778888877777 5777
Q ss_pred hHhHHHHHHHHhc--CCCChhHHHHhhhHHH
Q 014304 101 GSVSEAIGAWIIM--PRLDWRWLLGLSSIPS 129 (427)
Q Consensus 101 G~~~~~~~~~~~~--~~~~WR~~~~~~~i~~ 129 (427)
|.++++.++..+. ...+||..+.......
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 144 GLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 7777665443322 2358999666655444
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0009 Score=65.95 Aligned_cols=123 Identities=19% Similarity=0.156 Sum_probs=75.9
Q ss_pred HHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHhhhhHhHHhhccccCccc--hhhHH
Q 014304 287 LLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQ---SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS--VRSTG 360 (427)
Q Consensus 287 ~~~~~~l~d~~-GRR~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~--~R~~~ 360 (427)
.+++|+++||+ |+|+.+..+.++..+--+.+.... .......+.++. .+....=+-.....+|+||++ .|-.+
T Consensus 78 ~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~-iG~Gl~K~NiS~llg~ly~~~DprrD~g 156 (498)
T COG3104 78 PIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALII-VGTGLFKPNISSLLGELYPKDDPRRDGG 156 (498)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH-hccccccccHHHHHHHhcCCCCcccCCC
Confidence 46789999994 999998887766554444333321 111111111111 111111134567888999873 27777
Q ss_pred HHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 014304 361 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 361 ~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
+++-+...++|++++|++.+++.+..+....|...++-+.++.+..++.+
T Consensus 157 Ft~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 157 FTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred ccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 77778888999999999999998877644445554444455555555544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0061 Score=57.95 Aligned_cols=62 Identities=21% Similarity=0.141 Sum_probs=49.2
Q ss_pred hhhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccch-hhhhhh-hhccCCCcc
Q 014304 25 LWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWF-LEFVPPSNR 87 (427)
Q Consensus 25 ~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~-~~~~~~-~E~~p~~~R 87 (427)
.||+|||+.-+.-+++++++.+ +...+|+..|+++|++.|++..... +-=+|+ .|+-.++.+
T Consensus 93 aD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~ 156 (354)
T PF05631_consen 93 ADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP 156 (354)
T ss_pred HHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3699999999999999998885 6677999999999999999977654 334554 688555433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.006 Score=61.60 Aligned_cols=124 Identities=13% Similarity=0.137 Sum_probs=69.8
Q ss_pred HHHHHHhhhC-----hhHHHHHHHHHHH-HHHHHHHhhcchh-HHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHH
Q 014304 289 LAAILVDTAG-----RKLSITIMFTLSC-LFLLPLVTYQSNI-LTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA 361 (427)
Q Consensus 289 ~~~~l~d~~G-----RR~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~ 361 (427)
+.+.++||++ ||+.+..+.++.+ .....+....+.. ......++..++........-.+..|..+ +.++.+.
T Consensus 79 l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~ 157 (468)
T TIGR00788 79 FAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGP 157 (468)
T ss_pred HHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCC
Confidence 4899999997 6666666554442 2222222111111 11112333333333344567889999998 5444433
Q ss_pred ---HHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCC
Q 014304 362 ---GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 414 (427)
Q Consensus 362 ---g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk 414 (427)
+.......+|..+++.+.+.+.+..+....+.+.+.+.++..+... +.||.+
T Consensus 158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~-~~~E~~ 212 (468)
T TIGR00788 158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSN-LSKERR 212 (468)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-hccccc
Confidence 3333444578889998888887765545566666666666644344 446865
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=61.77 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccchhhhhhhhhccCCCcchhHHHHHHHHHHHhHhHHHHHHH
Q 014304 31 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAW 110 (427)
Q Consensus 31 k~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~~~~~~ 110 (427)
|+++++..+.....+.+..+.++..+.-+.-+..|.....+.+-++|+-+..+|+++.+..+.--...-.|...++.++-
T Consensus 72 KPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQ 151 (433)
T KOG3810|consen 72 KPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQ 151 (433)
T ss_pred ceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHH
Confidence 77777788888888888999999999999999999988887777788889999999988888777777777776666654
Q ss_pred Hhc--CCCChhHHHHhhhHHHHHHHHHhhcccCcchhH
Q 014304 111 IIM--PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYL 146 (427)
Q Consensus 111 ~~~--~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L 146 (427)
++. ...+.+.+..+...-..+....-.++|.-+|-+
T Consensus 152 lLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl 189 (433)
T KOG3810|consen 152 LLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSL 189 (433)
T ss_pred HHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhh
Confidence 432 345677776666544444555555666555433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.41 E-value=3.2e-05 Score=78.90 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=2.8
Q ss_pred HHHHHHHHHhhhccccch-hhhhhhhhccCCCcchhHHHHHHHHHHHhHhHHHHHHHH
Q 014304 55 ITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWI 111 (427)
Q Consensus 55 ~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~~~~~~~ 111 (427)
..++++.++.|+|....+ ...+|+=|.++++.-+.+.++......+|..++.+++..
T Consensus 142 ~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~ 199 (539)
T PF03137_consen 142 YVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSF 199 (539)
T ss_dssp ----------SSS---------------------------------------------
T ss_pred HHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHH
Confidence 358999999999987764 457888899999999999999999999999887766544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0034 Score=62.33 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=85.8
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccch
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 356 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~ 356 (427)
.+.-.++++..++++.+++|+|+-+.+..+++.-..=.+.+....+.|..+-+=++........|...-.|++.+.|++.
T Consensus 413 a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l 492 (618)
T KOG3762|consen 413 ALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL 492 (618)
T ss_pred hhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 34455678888899999999999998887766555545444444555544333344444455667888899999999999
Q ss_pred hhHHHHHHHHHhh-HhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 014304 357 RSTGAGAANAMGR-IGGMVCPLVAVALVANCHQMTAVVLLVVVIVTS 402 (427)
Q Consensus 357 R~~~~g~~~~~~~-~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~ 402 (427)
|+++.|+...... +|-.++.++.+.+.+..+....+-++++.+++.
T Consensus 493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~ 539 (618)
T KOG3762|consen 493 RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVT 539 (618)
T ss_pred hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHH
Confidence 9999999876643 455555555565566666555666666555433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.17 Score=49.42 Aligned_cols=102 Identities=24% Similarity=0.201 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhcccc-chhhhhhhhhccCCCcchhHHHHHHHHHHHhHhHHHHHHHHhc
Q 014304 35 LGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGS-GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM 113 (427)
Q Consensus 35 ~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~~~~~~~~~ 113 (427)
..+.+++.++-++.++++|.++=+++=.+.+++.|. +.+...+. ...|+. ..+-+..+.+.+.++++..-..+.
T Consensus 93 ~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT 167 (402)
T PF02487_consen 93 LICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGKS----SLSAWSSGTGGAGLVGALYYLGLT 167 (402)
T ss_pred HHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCcc----ccccccCCcChhhHHHHHHHHHHH
Confidence 555667778888889999999988999999998874 44444433 344543 233444444445555554322222
Q ss_pred CCCCh--hHHHHhhh-HHHHHHHHHhhcccCc
Q 014304 114 PRLDW--RWLLGLSS-IPSFILLAFLGFQPES 142 (427)
Q Consensus 114 ~~~~W--R~~~~~~~-i~~~i~~~~~~~lpES 142 (427)
. .++ |..+++.. +|.+....+++.+|..
T Consensus 168 ~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 168 T-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred H-hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2 343 65555554 4444444444455543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.003 Score=63.36 Aligned_cols=86 Identities=16% Similarity=0.068 Sum_probs=64.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHhhhccccc-hhhhhhhhhccCC-------CcchhHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSP--NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPP-------SNRGMWMVIFS 95 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~--~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~-------~~Rg~~~~~~~ 95 (427)
+|+|+|+.+.++.++..++.+...+.+ +.+.+++.-++.|+|.+.. +...+...|..|. +++|...++.+
T Consensus 289 ~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~ 368 (448)
T PRK09848 289 ARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFS 368 (448)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHH
Confidence 589999999999888888777666654 5677778888999998875 3445555666654 45699999999
Q ss_pred HHHHHhHhHHHHHHHH
Q 014304 96 SFWTIGSVSEAIGAWI 111 (427)
Q Consensus 96 ~~~~iG~~~~~~~~~~ 111 (427)
....+|..+++.+...
T Consensus 369 ~~~klg~aig~~i~g~ 384 (448)
T PRK09848 369 FTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998887665443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0053 Score=61.57 Aligned_cols=131 Identities=20% Similarity=0.093 Sum_probs=89.3
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHH--HHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLL--PLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
..+.+++.+.+++++||+|-|+.+..+.+++++..+ +++.....+...+.=+..+++....++....+.+.-.|++-|
T Consensus 83 ~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Er 162 (466)
T KOG2532|consen 83 FWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNER 162 (466)
T ss_pred HHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHH
Confidence 345566777889999999999998877766655433 223222222222222222333344567788999999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHhhcc
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVAN-CHQMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
++..++..+...+|.++.--+.+++-+. .|=...|++++.++++-.++.+++.
T Consensus 163 s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 163 STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988886677777766 3323567788888776665555553
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0038 Score=63.37 Aligned_cols=126 Identities=16% Similarity=0.109 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--HHhhhhHhHHhhccccCccchhhHHH
Q 014304 284 IPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARM--CVMGAFTVSLIYAAEIYPTSVRSTGA 361 (427)
Q Consensus 284 ~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ElfPt~~R~~~~ 361 (427)
.....+.+.+.||+|.|...+.+.++++..++.-.+..+ .+...+.+.... +....+...-++.+ -|..+.|+.+.
T Consensus 95 ~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~-i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~ 172 (509)
T KOG2504|consen 95 LLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS-LWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALAT 172 (509)
T ss_pred HHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHH
Confidence 334467888999999999998887777655544333222 222222222221 11222233334444 56688899999
Q ss_pred HHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Q 014304 362 GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 411 (427)
Q Consensus 362 g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~p 411 (427)
|++.+-.-+|.++-|.+.-++++..+...+..+++.+.+-+.++...+.|
T Consensus 173 Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 173 GIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999888888887778888888888877778877777
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0025 Score=64.20 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=87.5
Q ss_pred hhccch--hHHHHHHHHHHHHHHHhhc--------chhHHHHHHHHHHhhhccccchh-hhhhhhhccCCCcchhHHHHH
Q 014304 26 WQNLVR--MGFLGEALVTAGAGLLSSF--------SPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSNRGMWMVIF 94 (427)
Q Consensus 26 ~~~GRk--~~l~~~~~~~~i~~~~~~~--------a~~~~~l~v~R~l~G~g~G~~~~-~~~~~~E~~p~~~Rg~~~~~~ 94 (427)
||+|-| ++++.+++.+.+..+...+ ..+-+.+.+.=++.|+..|+.+. .-++++|..|+++.+...+++
T Consensus 342 ~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly 421 (477)
T PF11700_consen 342 DRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLY 421 (477)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 389988 8999988888666666555 66788899999999999999865 457889999999999999999
Q ss_pred HHHHHHhHhHHHHHHHHhcCCC-ChhHHHHhhhHHHHHHHHHhhcc
Q 014304 95 SSFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPSFILLAFLGFQ 139 (427)
Q Consensus 95 ~~~~~iG~~~~~~~~~~~~~~~-~WR~~~~~~~i~~~i~~~~~~~l 139 (427)
....-....+++++...+.... +=|..+....+..++.+++++++
T Consensus 422 ~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 422 AITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 9988888888887766554333 47777766655555545444444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0063 Score=60.94 Aligned_cols=132 Identities=14% Similarity=0.063 Sum_probs=68.1
Q ss_pred hhhhHHHHHHHHHhh----hChhHHH-HHHHHHHHHHHHHHHh-hc-chh----HHHHHHHHHHHHHhhhhHhHHhhccc
Q 014304 282 AEIPGLLLAAILVDT----AGRKLSI-TIMFTLSCLFLLPLVT-YQ-SNI----LTTGLLFGARMCVMGAFTVSLIYAAE 350 (427)
Q Consensus 282 ~~~~g~~~~~~l~d~----~GRR~~~-~~~~~~~~~~~~~~~~-~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~E 350 (427)
...+...+.|.++|| +|||+.. +.+....++....... +. +.. +..+...+...+.........+..+|
T Consensus 57 ~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~ 136 (444)
T PRK09669 57 LDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGA 136 (444)
T ss_pred HHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHH
Confidence 344445567889997 7886654 4444444333332222 11 111 11111111111112222344678889
Q ss_pred cC-ccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcch-------hHHHHHHHHHHHHHHHHHhhccccC
Q 014304 351 IY-PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ-------MTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 351 lf-Pt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~-------~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
+. +++.|+...+.....+.+|+.+++.+...+....+. ...+.+++++.+++.+.+++..+|.
T Consensus 137 ~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 137 ITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 87 457899998998888888888887655544433221 1133445555555544444443443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0035 Score=61.83 Aligned_cols=108 Identities=15% Similarity=0.199 Sum_probs=82.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcc-hhHHHH----HHHHHHhhhccccch-hhhhhhhhccCCCcchhHHHHHHH-HH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFS-PNYITL----ITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSS-FW 98 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a-~~~~~l----~v~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~-~~ 98 (427)
.|+|-|+.++++.+.+.+=..+.++. ++.+.. +..-.+.|+..|... +...|+.|.+|++.|++..+++.. ..
T Consensus 268 ~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~ 347 (400)
T PF03825_consen 268 KRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSF 347 (400)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 58999999999999999999888877 444433 334567999999875 567788999999999999988776 56
Q ss_pred HHhHhHHHHHHHHhcCC------CChhHHHHhhhHHHHHHH
Q 014304 99 TIGSVSEAIGAWIIMPR------LDWRWLLGLSSIPSFILL 133 (427)
Q Consensus 99 ~iG~~~~~~~~~~~~~~------~~WR~~~~~~~i~~~i~~ 133 (427)
++|..+++.++..+... .+|...+.+.+...++..
T Consensus 348 Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~ 388 (400)
T PF03825_consen 348 GLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVIL 388 (400)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 78998888877665432 346677777766655543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.024 Score=57.34 Aligned_cols=103 Identities=9% Similarity=-0.024 Sum_probs=56.4
Q ss_pred HhhhhhHHHHHHHHHh----hhChhHHH-HHHHHHHHHHHHHHHhhc--chhHHHHH---HH-HHHHHHhhhhHhHHhhc
Q 014304 280 SLAEIPGLLLAAILVD----TAGRKLSI-TIMFTLSCLFLLPLVTYQ--SNILTTGL---LF-GARMCVMGAFTVSLIYA 348 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d----~~GRR~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~-~~~~~~~~~~~~~~~~~ 348 (427)
-+...+...+.|.++| |+|||+.. ..+...+++....+.... ++...... .+ +...+............
T Consensus 52 ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~ 131 (473)
T PRK10429 52 RIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLV 131 (473)
T ss_pred HHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhh
Confidence 3334444556789999 56996554 445554444433332211 11111111 11 11111122223456788
Q ss_pred cccC-ccchhhHHHHHHHHHhhHhHhHHHHHHHHH
Q 014304 349 AEIY-PTSVRSTGAGAANAMGRIGGMVCPLVAVAL 382 (427)
Q Consensus 349 ~Elf-Pt~~R~~~~g~~~~~~~~~~~~~p~~~~~l 382 (427)
+|+- .++.|+...+.-...+.+++++.+.+...+
T Consensus 132 ~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~ 166 (473)
T PRK10429 132 PTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF 166 (473)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 589999999987777888777766554433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0031 Score=62.83 Aligned_cols=125 Identities=17% Similarity=0.086 Sum_probs=72.9
Q ss_pred HHHHHHHh----hhChhHHH-HHHHHHHHHHHHHHHhhcc-h---hHH----HHHHHHHHHHHhhhhHhHHhhccccCcc
Q 014304 288 LLAAILVD----TAGRKLSI-TIMFTLSCLFLLPLVTYQS-N---ILT----TGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 288 ~~~~~l~d----~~GRR~~~-~~~~~~~~~~~~~~~~~~~-~---~~~----~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
.+.|.++| |+|||+.. ..+....++....+....+ + ... .+..++...+.........+..+|+.++
T Consensus 55 p~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~ 134 (428)
T PF13347_consen 55 PLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPD 134 (428)
T ss_pred CcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcccccc
Confidence 36778889 79998865 4555555555544443211 1 111 1111111122222223457899999985
Q ss_pred -chhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcch-------hHHHHHHHHHHHHHHHHHhhcccc
Q 014304 355 -SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ-------MTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 355 -~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~-------~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
+.|....+.-...+.+|+.+.+.+.+.+.+..+. .....+++++.+++.+...+..+|
T Consensus 135 ~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 135 PDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 7899999999999988887776666655543321 223344555556666666666566
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.048 Score=54.96 Aligned_cols=103 Identities=11% Similarity=-0.082 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHHhh----hChhHHHH-HHHHHHHHHHHHHHh-hc-chhH--HH--HHHHHHHHHHhhhhHhHHhhcccc
Q 014304 283 EIPGLLLAAILVDT----AGRKLSIT-IMFTLSCLFLLPLVT-YQ-SNIL--TT--GLLFGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 283 ~~~g~~~~~~l~d~----~GRR~~~~-~~~~~~~~~~~~~~~-~~-~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~El 351 (427)
..+.-.+.|.++|| +|||+..+ .+....++....+.. +. +... .. +...+...+........++..+|+
T Consensus 58 Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~l 137 (460)
T PRK11462 58 DAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVI 137 (460)
T ss_pred HHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 33444567889995 69987654 444444444433332 11 1111 11 111111112222223456788888
Q ss_pred Cc-cchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 352 YP-TSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 352 fP-t~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
-+ ++.|++..++-...+.+|+.+++.+...+.+.
T Consensus 138 t~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~ 172 (460)
T PRK11462 138 TNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL 172 (460)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 79999999999999999988887776555544
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.029 Score=58.47 Aligned_cols=122 Identities=13% Similarity=0.111 Sum_probs=88.3
Q ss_pred cchhh-hccchhHHHHHHHHHHHHHHHhhcc--------------------h----------------------------
Q 014304 22 LPHLW-QNLVRMGFLGEALVTAGAGLLSSFS--------------------P---------------------------- 52 (427)
Q Consensus 22 ~~~~~-~~GRk~~l~~~~~~~~i~~~~~~~a--------------------~---------------------------- 52 (427)
++|+. |..|-+.+.++++++++++++.++- +
T Consensus 152 VsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 231 (735)
T KOG3626|consen 152 VSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKE 231 (735)
T ss_pred HHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCccccccc
Confidence 45553 6667777888999999999888651 0
Q ss_pred ----hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhHHHHHHHHhcC-------------
Q 014304 53 ----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP------------- 114 (427)
Q Consensus 53 ----~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~~~~~~~~~~------------- 114 (427)
-+..++++.++.|+|.--. +...+|+=|.+.+++-..+.++......+|.+++-+++.+...
T Consensus 232 ~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it 311 (735)
T KOG3626|consen 232 STSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGIT 311 (735)
T ss_pred CCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCC
Confidence 0125888899999886654 4457888899999999999999999999999888777655311
Q ss_pred --CC----ChhHHHHhhhHHHHHHHHHhhcccCcc
Q 014304 115 --RL----DWRWLLGLSSIPSFILLAFLGFQPESP 143 (427)
Q Consensus 115 --~~----~WR~~~~~~~i~~~i~~~~~~~lpESP 143 (427)
+. .|..-|++.+...++..+.+++.|...
T Consensus 312 ~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 312 PTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 01 266667777777777666666766554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=53.48 Aligned_cols=112 Identities=16% Similarity=-0.005 Sum_probs=78.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSF-------SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSF 97 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~-------a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~ 97 (427)
|++|.+.++.++.....+|-...-. .++++++.+.-++.|.+.+.. .+......+.+|. +||++.++...+
T Consensus 61 d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~ 139 (250)
T PF06813_consen 61 DRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGF 139 (250)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHH
Confidence 7999999999999988888776643 246788888888888775543 3333334577875 799999999999
Q ss_pred HHHhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhc
Q 014304 98 WTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 138 (427)
Q Consensus 98 ~~iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~ 138 (427)
.+++..+-+.+...+.+...-+.++.....|.++.+...++
T Consensus 140 ~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~ 180 (250)
T PF06813_consen 140 FGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFF 180 (250)
T ss_pred HHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 99998776655544445545666666666666654444433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0035 Score=61.33 Aligned_cols=108 Identities=10% Similarity=0.012 Sum_probs=85.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccch-hhhhhhhhccCCCcchhHHHH-HHHHHHHhHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~-~~~~~~iG~~ 103 (427)
+|+|-|+.++++..++++=..++++++|...+.+.+.+.|+..+... .+.-|+.+..|+|..++.-.+ .+..-++|..
T Consensus 284 ~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~ 363 (412)
T PF01306_consen 284 NRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGII 363 (412)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHH
T ss_pred HhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999998875 567799999999998776655 4677888888
Q ss_pred HHHHHHHHhcCCCChhHHHHhhhHHHHHHH
Q 014304 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILL 133 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~ 133 (427)
+.+..+..+....|.+..+++.+...+...
T Consensus 364 i~s~~~G~lyd~~G~~~tylimg~iv~~~~ 393 (412)
T PF01306_consen 364 ILSPLAGYLYDRIGFQHTYLIMGLIVLPFT 393 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHhhHhhcCcHHHHHHHHHHHHHHH
Confidence 777777766666788887766665544433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.02 Score=56.89 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=65.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHhhhccccc-hhhhhhh------hhccC-CCcchhHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSP--NYITLITLRCLVGVGLGSG-HVFLSWF------LEFVP-PSNRGMWMVIFS 95 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~--~~~~l~v~R~l~G~g~G~~-~~~~~~~------~E~~p-~~~Rg~~~~~~~ 95 (427)
+|+|+|+.+.++++++.++.++.-+.+ |....++..++.|+|.+.. +...+.+ .|+-. +|.-|...+...
T Consensus 297 ~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~t 376 (467)
T COG2211 297 KKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMT 376 (467)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHH
Confidence 489999999999999999999998877 7889999999999998864 3333333 46644 444487778888
Q ss_pred HHHHHhHhHHHHHHHH
Q 014304 96 SFWTIGSVSEAIGAWI 111 (427)
Q Consensus 96 ~~~~iG~~~~~~~~~~ 111 (427)
.+.=+|..++..+..+
T Consensus 377 F~~K~g~ala~~~~g~ 392 (467)
T COG2211 377 FFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887776654443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.017 Score=48.65 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=68.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccch-hhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
+++|.|++++++.+.+.+..+.- +-+|.+.++.+-.+.|+|.+... +-..|+.|...++.|++..++.-.....+.++
T Consensus 62 ~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~ 140 (156)
T PF05978_consen 62 NKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIF 140 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 68999999999999998766654 56788899999999999999764 45678899999999999888766666667677
Q ss_pred HHHHHHH
Q 014304 105 EAIGAWI 111 (427)
Q Consensus 105 ~~~~~~~ 111 (427)
+.+..+.
T Consensus 141 G~~~~~~ 147 (156)
T PF05978_consen 141 GNLFLFF 147 (156)
T ss_pred HHHHHHH
Confidence 6655544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.034 Score=56.13 Aligned_cols=135 Identities=16% Similarity=0.082 Sum_probs=90.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+..++.+++.+.++.+.||++-.+.+..+.+..+++.+.-...++.+...+.=++..++-...|+..-.+.+--|..+-|
T Consensus 89 ~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~ 168 (495)
T KOG2533|consen 89 VFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSER 168 (495)
T ss_pred HHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhh
Confidence 33566778888999999999955555444443333332222212222222333444455566778888999999999999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHhhcccc
Q 014304 358 STGAGAANAMGRIGGMVCPLVAVALVAN------CHQMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~------~~~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
++-.|+-++.+.+|+++++++...+... .+=.+.|++-+++.+..+++++++.|+
T Consensus 169 g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 169 GLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred hhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 9999999999999999999888765431 111356788888887777777766665
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.96 Score=45.50 Aligned_cols=41 Identities=5% Similarity=-0.138 Sum_probs=38.1
Q ss_pred hHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHH
Q 014304 343 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 343 ~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~ 383 (427)
+.|.+.+|++.++--.+-+++....+++|.++++.+..++.
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998877665
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.012 Score=56.92 Aligned_cols=115 Identities=17% Similarity=0.077 Sum_probs=89.4
Q ss_pred hccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccchhh-hhhhhhccCCCcchhHHHHHHHHHHHhHhHH
Q 014304 27 QNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE 105 (427)
Q Consensus 27 ~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~ 105 (427)
|+|-|+++..+++++.+..+...+...-.-+.++=++.|...|+.+.. =+|+.+.+|+++-++..++++.+--.++.++
T Consensus 314 rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~g 393 (438)
T COG2270 314 RFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLG 393 (438)
T ss_pred HhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHH
Confidence 899999999999999999998888888788888889999999998754 5799999999999999999999888888888
Q ss_pred HHHHHHhcC-CCChhHHHHhhhHHHHHHHHHhhcccC
Q 014304 106 AIGAWIIMP-RLDWRWLLGLSSIPSFILLAFLGFQPE 141 (427)
Q Consensus 106 ~~~~~~~~~-~~~WR~~~~~~~i~~~i~~~~~~~lpE 141 (427)
+.+...+.. ..+=|.-+..-.+.-++-++.+..+|+
T Consensus 394 p~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~ 430 (438)
T COG2270 394 PFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKV 430 (438)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecC
Confidence 876554332 234666555544444444444445543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.056 Score=53.99 Aligned_cols=129 Identities=20% Similarity=0.187 Sum_probs=76.3
Q ss_pred HHHHHHHhhh---C--hhHHHHHHHHHHHHHHHHHHh-hc---chhHHHHHHHHHHHHHhhhhHhHHhhcccc---Cccc
Q 014304 288 LLAAILVDTA---G--RKLSITIMFTLSCLFLLPLVT-YQ---SNILTTGLLFGARMCVMGAFTVSLIYAAEI---YPTS 355 (427)
Q Consensus 288 ~~~~~l~d~~---G--RR~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~El---fPt~ 355 (427)
.+.|.++|-+ | ||+-++++..++.+....++. .. +.....+.+++..++....-.+.-+..+|. -|.+
T Consensus 42 p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~ 121 (433)
T PF03092_consen 42 PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES 121 (433)
T ss_pred hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence 3578888965 3 444455555555443333332 11 111222233333333333333455555565 4666
Q ss_pred hhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 014304 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~ 417 (427)
|+.-.+.+..+-.+|++++..+.+.+.+..+....+.+.+.+..+..+..+++.+|.+.++
T Consensus 122 -~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~ 182 (433)
T PF03092_consen 122 -RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVRP 182 (433)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccccc
Confidence 8888888888888999999888888877766555566666666666666777777744444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.3 Score=42.38 Aligned_cols=131 Identities=14% Similarity=0.011 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHh-----HHhhccccCccchhhH
Q 014304 285 PGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV-----SLIYAAEIYPTSVRST 359 (427)
Q Consensus 285 ~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ElfPt~~R~~ 359 (427)
+...+.|.+.||+|||+..+...+.-+++++.-... +.....+.=++.......-++. ..-....-||.+-.+.
T Consensus 84 i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~-~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~ 162 (354)
T PF05631_consen 84 IFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSS-NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSD 162 (354)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 334567889999999997665444433333322111 1111011001111111101111 1111234577777777
Q ss_pred HHHHHHHH-hhHhHhHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHhhccccCCCC
Q 014304 360 GAGAANAM-GRIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETKGQ 416 (427)
Q Consensus 360 ~~g~~~~~-~~~~~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~l~pEtk~~ 416 (427)
..+.+... +.+.++.+..+...+.+..+ +..|+..-..+.+++.+++...-+|..|.
T Consensus 163 tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 163 TFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 66655533 33445555555555554433 35566666666667777776666776664
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.21 Score=52.49 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=59.4
Q ss_pred HHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHhhc-c----hhH---HHHHHHHHHHHHhhhhHhHHhhccccCccc--
Q 014304 287 LLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQ-S----NIL---TTGLLFGARMCVMGAFTVSLIYAAEIYPTS-- 355 (427)
Q Consensus 287 ~~~~~~l~d~-~GRR~~~~~~~~~~~~~~~~~~~~~-~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~-- 355 (427)
.++++++.|+ +||++.+..+.++..+-...+.... + ... ....+.+...+..+.-+...+...|.|+.+
T Consensus 40 pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~ 119 (654)
T TIGR00926 40 PLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL 119 (654)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch
Confidence 4678889996 6999988776655433322222211 0 111 111111111111222235566777778643
Q ss_pred -hhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 356 -VRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 356 -~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
.|...+.+.+..+++|+++++.+.+++.+.
T Consensus 120 ~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~ 150 (654)
T TIGR00926 120 SLRSRFFSFFYFAINAGSLISTIITPILRGD 150 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477888999999999999999999988644
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.04 Score=53.84 Aligned_cols=104 Identities=18% Similarity=0.152 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHHhhcc---hhH------HHHHHHHHHhhhccccc-hhhhhhhhhccCCCc---chhHHHHHHHHH
Q 014304 32 MGFLGEALVTAGAGLLSSFS---PNY------ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN---RGMWMVIFSSFW 98 (427)
Q Consensus 32 ~~l~~~~~~~~i~~~~~~~a---~~~------~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~ 98 (427)
|++.++.+++.+|.++..++ ++. ..++++-.+.++|.|+. +.+.+..+|-.+++. |......+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57888888888888884332 222 57999999999999998 667788888777653 455567778888
Q ss_pred HHhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHH
Q 014304 99 TIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 135 (427)
Q Consensus 99 ~iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~ 135 (427)
++|.+++.....++..+.+|.+.|++.++..++.+..
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence 8999887766656666789999999988766654443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.13 Score=54.08 Aligned_cols=108 Identities=16% Similarity=0.050 Sum_probs=73.5
Q ss_pred hccchhHHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHHhhhccccc-hhhhhhhhhccCCCc---chhHHHHH
Q 014304 27 QNLVRMGFLGEALVTAGAGLLSSFSPN--------YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN---RGMWMVIF 94 (427)
Q Consensus 27 ~~GRk~~l~~~~~~~~i~~~~~~~a~~--------~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~---Rg~~~~~~ 94 (427)
++||++++.+..+++.++-++.+++.. ...++++=.+..+|.|+. +...+...|-.++++ |-....++
T Consensus 50 ~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~f 129 (654)
T TIGR00926 50 WLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFF 129 (654)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHH
Confidence 799999999999999998887766421 234667777777788876 556677776666543 34445555
Q ss_pred HHHHHHhHhHHHHHHHHhc-------CCCChhHHHHhhhHHHHHHHH
Q 014304 95 SSFWTIGSVSEAIGAWIIM-------PRLDWRWLLGLSSIPSFILLA 134 (427)
Q Consensus 95 ~~~~~iG~~~~~~~~~~~~-------~~~~WR~~~~~~~i~~~i~~~ 134 (427)
..+.++|++++..+...+. .+.+|...|++.++..++.++
T Consensus 130 Y~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~l 176 (654)
T TIGR00926 130 YFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALI 176 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHH
Confidence 6666677776655544433 134699999888776655443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.57 Score=42.93 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=49.2
Q ss_pred hhhhhcc--chhhhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccch-hhhhh-hhhccCCC
Q 014304 16 NIFMFRL--PHLWQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSW-FLEFVPPS 85 (427)
Q Consensus 16 ~~~~~~~--~~~~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~-~~~~~-~~E~~p~~ 85 (427)
+.+|+.+ +..||-|||+.-..-++.++++ .++..+|.|-.++++|.+-|++..... .--+| ++|...+|
T Consensus 85 smLFGtivgSLaDkqGRKracvtycitYiLs-CiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr 157 (454)
T KOG4332|consen 85 SMLFGTIVGSLADKQGRKRACVTYCITYILS-CITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKR 157 (454)
T ss_pred HHHHHHHHHHHHhhhccccceeeehHHHHHH-HHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence 4455544 3448999999877666666554 457789999999999999999877653 44455 46877443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.1 Score=49.63 Aligned_cols=97 Identities=9% Similarity=-0.025 Sum_probs=64.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|+|+.+.++.++..++.++....++...+ .+=++.|++.+.. |...+...|..|++ .+...++. ....+|..+
T Consensus 203 ~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i 279 (310)
T TIGR01272 203 PMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAI 279 (310)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchH
Confidence 58999998888888777777656555544332 3445778888776 56666777777765 34445554 445577777
Q ss_pred HHHHHHHhcCCCChhHHHHhh
Q 014304 105 EAIGAWIIMPRLDWRWLLGLS 125 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~ 125 (427)
.+.+...+....|-+..+.+.
T Consensus 280 ~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 280 VPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHHHHHHHhccchHHHHHH
Confidence 777666665666777776643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.031 Score=55.82 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=88.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccch-hhhhhhhhccCCCcchhHHHHHHH-HHHHhHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWMVIFSS-FWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~-~~~iG~~ 103 (427)
.|+||-+++.+.+.+..+==+...+.+|.|+.+-.-+++|+..+... ++.+|+...+||+.|..+.++.+. +.++|-=
T Consensus 431 ~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g 510 (618)
T KOG3762|consen 431 EKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKG 510 (618)
T ss_pred HHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcc
Confidence 48999999999888888777788889999999999999999999874 567899999999999988877665 6677777
Q ss_pred HHHHHHHHhcCCCChhHHHHhhhHHHHHHHHH
Q 014304 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 135 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~ 135 (427)
++++++..+....+=|..|-..++-+++.+..
T Consensus 511 ~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 511 LGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred hhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 77777666666677788777666666555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.63 Score=45.29 Aligned_cols=51 Identities=20% Similarity=0.117 Sum_probs=43.8
Q ss_pred hhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcch
Q 014304 338 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ 388 (427)
Q Consensus 338 ~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~ 388 (427)
........+..+|+-|++.|+++.++.+.+--+|-+++..+.+.+++.+++
T Consensus 104 ~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~ 154 (403)
T PF03209_consen 104 HASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP 154 (403)
T ss_pred hHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence 334456788999999999999999999999999999999998888877654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=1 Score=44.34 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=63.6
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH--HHhhc--chhHHHHHHHHHHHHHhh----hhHhHHhhcc
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP--LVTYQ--SNILTTGLLFGARMCVMG----AFTVSLIYAA 349 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 349 (427)
+..+..++-.+.+.|+.||.|-|.....+....++-... +.... ++...--+...++..... ...++.-...
T Consensus 87 Iym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~ 166 (480)
T KOG2563|consen 87 IYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAA 166 (480)
T ss_pred HHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHH
Confidence 344556667788899999999999887766554432211 11111 111111111122111111 1123445566
Q ss_pred ccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh
Q 014304 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385 (427)
Q Consensus 350 ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~ 385 (427)
--||++.|+++..++.+.+.+|..++..+-+.+..+
T Consensus 167 ~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 167 VWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 679999999999999998888888876666655544
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.2 Score=37.48 Aligned_cols=102 Identities=12% Similarity=-0.016 Sum_probs=63.4
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchh
Q 014304 278 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 357 (427)
Q Consensus 278 i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R 357 (427)
+......++++++..+++++|.|+.+.++.+.-.+....... .+.+.......+..++....|.....|..|.-..+.|
T Consensus 45 i~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~ 123 (156)
T PF05978_consen 45 ILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETI 123 (156)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHH
Confidence 334445566778888999999999998876655444433222 1222111112222233334456666788888888999
Q ss_pred hHHHHHHHHHhhHhHhHHHHHHH
Q 014304 358 STGAGAANAMGRIGGMVCPLVAV 380 (427)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~p~~~~ 380 (427)
++-.|+-..+...+.+++..+..
T Consensus 124 ~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 124 GRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888877777776665544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=93.82 E-value=2.4 Score=38.68 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=36.8
Q ss_pred CcchhHHHHHHHHHHHhHhHHHHHHHHh-----cCCCChhHHHHhhhHHHHHHHHHhh
Q 014304 85 SNRGMWMVIFSSFWTIGSVSEAIGAWII-----MPRLDWRWLLGLSSIPSFILLAFLG 137 (427)
Q Consensus 85 ~~Rg~~~~~~~~~~~iG~~~~~~~~~~~-----~~~~~WR~~~~~~~i~~~i~~~~~~ 137 (427)
|+|+..+.+...++++|.++.-+..... ....+|++++.+.++..++.++.+.
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ 59 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYI 59 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888889999998764332211 1134699999988877766655543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.9 Score=41.50 Aligned_cols=105 Identities=27% Similarity=0.225 Sum_probs=59.9
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHhhhhHhHHhhccccCcc-ch
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS--NILTTGLLFGARMCVMGAFTVSLIYAAEIYPT-SV 356 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt-~~ 356 (427)
.+....+..+.+.+.||.|||+.+..+........+....... .+..........+......+....+.+|.+|. ..
T Consensus 49 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (338)
T COG0477 49 FLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE 128 (338)
T ss_pred HHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH
Confidence 3344455578899999999997666555431111111111111 11111111112222233456778999999998 67
Q ss_pred hhHHHHHHHH-HhhHhHhHHHHHHHHHHh
Q 014304 357 RSTGAGAANA-MGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 357 R~~~~g~~~~-~~~~~~~~~p~~~~~l~~ 384 (427)
|+...+.... ...++..++|.+...+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 129 RGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877 466777777755554443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.53 E-value=8.9 Score=38.33 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=28.6
Q ss_pred hHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHH
Q 014304 341 FTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLV 378 (427)
Q Consensus 341 ~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~ 378 (427)
.+....+.++..+++.|-.+..+...+-.+|-.++..+
T Consensus 390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999888877777666666555543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.92 E-value=3.7 Score=41.25 Aligned_cols=136 Identities=19% Similarity=0.226 Sum_probs=72.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCh-hHHHHHHHHHHHHHHHHH-H-hhcchhHHHHHHHHHHHH---HhhhhHhHHhhcc
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGR-KLSITIMFTLSCLFLLPL-V-TYQSNILTTGLLFGARMC---VMGAFTVSLIYAA 349 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GR-R~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 349 (427)
.....++...++.+.++...|.+. |+.++.+.+++.+..+.. . .+..+... ..+..+.++ ..+..+..-.|.+
T Consensus 77 iaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~-y~mL~~R~l~Gvg~~n~a~lR~Y~a 155 (488)
T KOG2325|consen 77 IAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVK-YLMLVARILTGVGVGNFAVLRAYIA 155 (488)
T ss_pred HHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHcCcCcccHHHHHHHHH
Confidence 344567778888888888899883 444444444433322222 2 22222122 222233222 2244567788888
Q ss_pred ccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHH---hh---------cc-hhHHHHHHHHHHHHHHHHHhhcccc
Q 014304 350 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV---AN---------CH-QMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 350 ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~---~~---------~~-~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
.-=-.+.|.++++.....--+|.+++|.+-..+. +. ++ .+.+.++.+.+.++..+...++..|
T Consensus 156 ~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 156 DASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred hccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 8666677777776666544455555554433221 11 11 1345666677777776666655545
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.10 E-value=10 Score=37.69 Aligned_cols=100 Identities=11% Similarity=0.016 Sum_probs=61.9
Q ss_pred hccchhh--hccchhHHHHHHHHHH-HHHHHhhcchhHHH------------HHHHHHHhhhcc---cc--ch-hhhhhh
Q 014304 20 FRLPHLW--QNLVRMGFLGEALVTA-GAGLLSSFSPNYIT------------LITLRCLVGVGL---GS--GH-VFLSWF 78 (427)
Q Consensus 20 ~~~~~~~--~~GRk~~l~~~~~~~~-i~~~~~~~a~~~~~------------l~v~R~l~G~g~---G~--~~-~~~~~~ 78 (427)
+..+|-. |||||+.++++..... ++-++..++..... .-+.-++.|+.. .. .. ..=+++
T Consensus 88 G~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L 167 (498)
T KOG0637|consen 88 GSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALL 167 (498)
T ss_pred cccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHH
Confidence 3344443 8999998888666554 44446666665432 445556666652 22 12 234566
Q ss_pred hhccCCCcchh-HHHHHHHHHHHhHhHHHHHHHHhcCCCChhHHHH
Q 014304 79 LEFVPPSNRGM-WMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 123 (427)
Q Consensus 79 ~E~~p~~~Rg~-~~~~~~~~~~iG~~~~~~~~~~~~~~~~WR~~~~ 123 (427)
...+....|.+ +++.+..+..+|.+++..+.. ..+|+-.+-
T Consensus 168 ~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~----y~~~~~~~~ 209 (498)
T KOG0637|consen 168 ADLARGDAKKTRANSVFSFFMAVGNVLGYALGS----YLGLYKIFP 209 (498)
T ss_pred HHhccChhhhhccchhHHHHHHhcceeeeeccc----ccCceEEee
Confidence 77766555544 899999999999998765442 456766543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.88 E-value=2.9 Score=38.85 Aligned_cols=109 Identities=15% Similarity=0.060 Sum_probs=69.4
Q ss_pred hhccchhHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGL-LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~-~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~ 103 (427)
||+||+.....+.++..+.+- ...|+ +..-+++-.+.|++-... -...+.+.-+.|.+.-|++-++.+.-.++|..
T Consensus 325 Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla 402 (459)
T KOG4686|consen 325 DKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLA 402 (459)
T ss_pred hhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhh
Confidence 599999877776665544443 33332 444455666667664332 22455567788999999999999999999999
Q ss_pred HHHHHHHHhcCCC---ChhHHHHh-hhHHHHHHHHHh
Q 014304 104 SEAIGAWIIMPRL---DWRWLLGL-SSIPSFILLAFL 136 (427)
Q Consensus 104 ~~~~~~~~~~~~~---~WR~~~~~-~~i~~~i~~~~~ 136 (427)
+.++++.++.... +|--.|.+ .+..++....+.
T Consensus 403 ~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil 439 (459)
T KOG4686|consen 403 FIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGIL 439 (459)
T ss_pred HHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 8888877765433 34444433 344455444433
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=85.26 E-value=0.31 Score=46.23 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=2.9
Q ss_pred HhHHhhccccCccchhhHHHHHHHHHhhHhHhHHH
Q 014304 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 376 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p 376 (427)
+....+.++.-+++.|-.+..+...+-.+|-.++.
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs 301 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGS 301 (309)
T ss_dssp HHHH-------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999988888887666666555555544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=84.79 E-value=12 Score=27.14 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHH
Q 014304 274 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF 307 (427)
Q Consensus 274 ~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~ 307 (427)
....+..+..+.+..+.+.++||.+|++......
T Consensus 39 il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 39 ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS 72 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 3344556677888899999999999998776543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=81.89 E-value=16 Score=36.83 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=21.6
Q ss_pred HHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHH
Q 014304 344 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA 379 (427)
Q Consensus 344 ~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~ 379 (427)
.-.++-.+..++-++.| +.|+++|.-.|....+..
T Consensus 139 VDGWALT~Ls~~n~~~A-STcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 139 VDGWALTMLSPENVGYA-STCQTVGQTAGYFLSFTV 173 (544)
T ss_pred eehhhhhhcChhhcchH-HHHHHhHhhhhHHHHHHH
Confidence 44555556677777776 677888765554444433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=81.38 E-value=6.6 Score=38.56 Aligned_cols=63 Identities=21% Similarity=0.186 Sum_probs=52.8
Q ss_pred cchhHHHHHHHHHHhhhccccchhhh-hhhhhccCCCcchhHHHHHHHHHHHhHhHHHHHHHHh
Q 014304 50 FSPNYITLITLRCLVGVGLGSGHVFL-SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII 112 (427)
Q Consensus 50 ~a~~~~~l~v~R~l~G~g~G~~~~~~-~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~~~~~~~~~ 112 (427)
+.||.+..++.=+..|+.-|..++.. ..+.|-.|+++|...++....+-+.|.+++++++..+
T Consensus 331 fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 331 FIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56888888899999999878777653 3456778999999999999999999999998877653
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=81.31 E-value=61 Score=32.33 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=58.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHH----HHHhhcch--hHHHHHHHH----HHHHHhhhhH-hH
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLL----PLVTYQSN--ILTTGLLFG----ARMCVMGAFT-VS 344 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~----~~~~~~~~~~-~~ 344 (427)
-.+..+.++.|.++..++.+|+|-.+.=..+......++. ......++ ......++. ..++ ...+- ..
T Consensus 299 R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~G-LW~fDL~~ 377 (432)
T PF06963_consen 299 RGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIG-LWSFDLAV 377 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHH-HHhhhHHH
Confidence 3455667788889999999999987755444332222211 11222222 222222211 2222 12222 45
Q ss_pred HhhccccCccchhhHHHHHHHHHhhHhHhHH
Q 014304 345 LIYAAEIYPTSVRSTGAGAANAMGRIGGMVC 375 (427)
Q Consensus 345 ~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~ 375 (427)
..+.-|.-|.+.|++-.|+=+.+.++...+.
T Consensus 378 ~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 378 TQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred HHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999888766543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=80.37 E-value=64 Score=31.92 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=60.7
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHH
Q 014304 288 LLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAM 367 (427)
Q Consensus 288 ~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~ 367 (427)
+....+.|.+|-|+.++...+.....-..+.+.. ....+-.+-.......++-...+.|+=-.-|++---++.+.+.+.
T Consensus 59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~-sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa 137 (412)
T PF01770_consen 59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT-SVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAA 137 (412)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHH
Confidence 4567888999999988776554433333332222 221111111111111122223344444445666666677777776
Q ss_pred hhHhHhHHHHHHHHHHhhcchhHHH--HHHHHHHHHHHHHHhhcccc
Q 014304 368 GRIGGMVCPLVAVALVANCHQMTAV--VLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 368 ~~~~~~~~p~~~~~l~~~~~~~~~~--~~~~~~~~i~~~~~~~l~pE 412 (427)
.-+|.+++..+.-.+....+..... .+-.+...++.+..+++|+-
T Consensus 138 ~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~ 184 (412)
T PF01770_consen 138 TLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP 184 (412)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6666666655544444432222212 22223334666666777653
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 427 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 8e-10 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 8e-10
Identities = 61/404 (15%), Positives = 114/404 (28%), Gaps = 78/404 (19%)
Query: 33 GFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-----VFLSWFLEFVPPSNR 87
G + A V G + + + + L L G G G + W+ R
Sbjct: 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----SQKER 153
Query: 88 GMWMVIFSSFWTIGS-VSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ----PES 142
G + +++ +G + + + DW L + + + ++ F P+S
Sbjct: 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS 213
Query: 143 PRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN 202
E + K + + LP N
Sbjct: 214 CGL----PPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP------------------N 251
Query: 203 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 262
K + + L R IL W + L
Sbjct: 252 KLL-----WYIAIANVFVYLLRYGILDWSPTY--------------------------LK 280
Query: 263 FSHH--PQDANLYIDEFITSLAEIPGLLLAAILVD---TAGRKLSITIMFTLS--CLFLL 315
H ++ F+ A IPG LL + D R + TL +
Sbjct: 281 EVKHFALDKSSWAY--FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338
Query: 316 PLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVC 375
+ + + + + G + ++A E+ P T AG G +GG V
Sbjct: 339 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 398
Query: 376 PLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETKGQE 417
V + +V++ I+ IL ++++ E + E
Sbjct: 399 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 442
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.91 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.85 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.85 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.83 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.3 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.16 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.15 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.04 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.97 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.65 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.38 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-44 Score=360.95 Aligned_cols=362 Identities=20% Similarity=0.216 Sum_probs=256.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhh------------------cchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCc
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSS------------------FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN 86 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~------------------~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~ 86 (427)
||+|||++++++++++.+++++++ +++|+.+++++|+++|+|.|+. ++...|+.|++|+++
T Consensus 80 Dr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~ 159 (491)
T 4gc0_A 80 NRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI 159 (491)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh
Confidence 699999999999999999999998 4789999999999999999997 567788999999999
Q ss_pred chhHHHHHHHHHHHhHhHHHHHHHHhc--------CCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHH
Q 014304 87 RGMWMVIFSSFWTIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRA 158 (427)
Q Consensus 87 Rg~~~~~~~~~~~iG~~~~~~~~~~~~--------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~ 158 (427)
||+..++.+.++.+|.+.+..+.+... ...+||+++.+..+++++.++.++++|||||||..|+|.||+++.
T Consensus 160 rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~ 239 (491)
T 4gc0_A 160 RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGI 239 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHH
T ss_pred hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHh
Confidence 999999999999999998887766542 235699999999999999888889999999999999999999999
Q ss_pred HHHHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHH
Q 014304 159 LEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSF 238 (427)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (427)
++|.++.+..+. +.. +..+... +.++ ......+++ .++..+..+..++.+..
T Consensus 240 l~~~~~~~~~~~---~~~--------------~~~~~~~-----~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~ 291 (491)
T 4gc0_A 240 LRKIMGNTLATQ---AVQ--------------EIKHSLD-----HGRK----TGGRLLMFG--VGVIVIGVMLSIFQQFV 291 (491)
T ss_dssp HHHHHHHHHHHH---HHH--------------HHHHHHH-----HHHH----HTTHHHHSC--CTHHHHHHHHHHHHHHT
T ss_pred HHHhcCCchhHH---HHH--------------HHHHHHH-----hhhh----hhhHHHHhc--ccHHHHHHHHHHHHHHh
Confidence 998766432110 000 0000000 0000 001112222 12222223333334444
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 014304 239 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV 318 (427)
Q Consensus 239 ~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~ 318 (427)
.++....+.+.+.... ............+.++..+++.+++++++||+|||+.+..+...+.++++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp CHHHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence 4444444444443211 11222334445666778888999999999999999998877766655544433
Q ss_pred h--h-cc-hhHHHHHHHH-HHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhh------cc
Q 014304 319 T--Y-QS-NILTTGLLFG-ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN------CH 387 (427)
Q Consensus 319 ~--~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~------~~ 387 (427)
. . .. ........+. ...+..+..++.|.+.+|+||+++|+++.|+++++++++++++|++.+.+.+. .+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~ 440 (491)
T 4gc0_A 361 TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH 440 (491)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 1 11 2222222222 22233444567899999999999999999999999999999999888766432 22
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccccCCCCcccccccccC
Q 014304 388 QMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTS 426 (427)
Q Consensus 388 ~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l~e~~~~~~ 426 (427)
...++++++++++++.++++++.||||||++||+++..|
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred hhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 235678899999999998888889999999999776543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=234.35 Aligned_cols=335 Identities=12% Similarity=0.126 Sum_probs=221.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSF----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~----a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
||+|||+.++++.++.+++.++.++ ++|+++++++|++.|++.|.. +...+++.|+.|+++|++..++.+.+..+
T Consensus 87 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 166 (451)
T 1pw4_A 87 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 166 (451)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHH
Confidence 6999999999999999999999999 999999999999999999876 56678899999999999999999999999
Q ss_pred hHhHHHHHHHHhcCCCC-hhHHHHhhhHHHHHHH-HHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccc
Q 014304 101 GSVSEAIGAWIIMPRLD-WRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 101 G~~~~~~~~~~~~~~~~-WR~~~~~~~i~~~i~~-~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
|.++++.++..+....+ ||+.+++.+++.++.. +.++.+||+|+....+++.++ ++ +
T Consensus 167 g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--------~ 225 (451)
T 1pw4_A 167 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-------------KN--------D 225 (451)
T ss_dssp HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-------------CC--------C
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-------------cc--------c
Confidence 99999888766555677 9999999888776644 445678999975321111000 00 0
Q ss_pred cccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
++ ++. ++ +++++..... ...+.+++.+ +.+......+.....+++...+.|......
T Consensus 226 -----~~----~~~----~~--~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 282 (451)
T 1pw4_A 226 -----YP----DDY----NE--KAEQELTAKQ-IFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEV---- 282 (451)
T ss_dssp ----------------------------CCTH-HHHHHTSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----
T ss_pred -----cc----ccc----hh--hhhccccccc-chHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 00 000 00 0000000000 1123344322 222233333444555556655655543210
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhh--ChhHHHHHHHHHHH-HHHHHHHhhc--chhHHHHHHHHH
Q 014304 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA--GRKLSITIMFTLSC-LFLLPLVTYQ--SNILTTGLLFGA 333 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~--GRR~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~ 333 (427)
.+.+.........+..+..+++.++.+++.||+ |||+.+..+..+.. +....+.... +.+......+..
T Consensus 283 ------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (451)
T 1pw4_A 283 ------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 356 (451)
T ss_dssp ------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred ------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 111222222334455667788889999999999 99998776655444 3333222221 222222223333
Q ss_pred HHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhH-hHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 014304 334 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 410 (427)
Q Consensus 334 ~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 410 (427)
.++..+.....+.+..|.+|++.|+++.|+.+.+.++ ++.++|.+.+++.+..+....+.+++++.+++.++..++.
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 357 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566789999999999999999999999999 9999999999988877655667777777777766666554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-24 Score=213.17 Aligned_cols=309 Identities=11% Similarity=-0.009 Sum_probs=204.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLS---SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~---~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 101 (427)
||+|||++++++.+++.++.++. ++++|+++++++|++.|++.|.. +...+++.|+.|+++|++..++.+.+..+|
T Consensus 86 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 165 (438)
T 3o7q_A 86 KKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG 165 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 69999999999999999999999 89999999999999999999986 567788999999999999999999999999
Q ss_pred HhHHHHHHHHhc-CCCC-------------------------hhHHHHhhhHHHHHHHHHh--hcccCcchhHhhcCchH
Q 014304 102 SVSEAIGAWIIM-PRLD-------------------------WRWLLGLSSIPSFILLAFL--GFQPESPRYLCLKGRTA 153 (427)
Q Consensus 102 ~~~~~~~~~~~~-~~~~-------------------------WR~~~~~~~i~~~i~~~~~--~~lpESP~~L~~k~r~~ 153 (427)
.++++.++..+. ...+ ||+.+.+.++..++..+.. ...||+++.. +
T Consensus 166 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~-- 239 (438)
T 3o7q_A 166 AIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN----H-- 239 (438)
T ss_dssp HHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC----C--
T ss_pred HHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc----c--
Confidence 999988876655 4443 9999977766655443332 3356655310 0
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHH
Q 014304 154 EAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLL 233 (427)
Q Consensus 154 ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (427)
+ ++ +.++....++++++.+..+...+..
T Consensus 240 ---------------~--------------~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~--- 267 (438)
T 3o7q_A 240 ---------------S--------------DA--------------------KQGSFSASLSRLARIRHWRWAVLAQ--- 267 (438)
T ss_dssp ---------------C--------------CS--------------------STTSHHHHHHHHTTCSHHHHHHHHH---
T ss_pred ---------------c--------------cc--------------------cccchhhhHHHHHhChHHHHHHHHH---
Confidence 0 00 0000112445556544333322222
Q ss_pred HHHHHHHHHHHHHHHHh-hccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHH
Q 014304 234 FGNSFAYYAVVLLISEL-SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL 312 (427)
Q Consensus 234 ~~~~~~~y~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~ 312 (427)
+.....+++...+.+.. .... .+.+.........+..+..+++.++.+++.||+|||+.+..+.+++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 268 FCYVGAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22233333333343433 2110 011111222233445667788889999999999999998877766655
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc-hhHH
Q 014304 313 FLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTA 391 (427)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~ 391 (427)
..+......+.. .........++....++..+.+..|.+|++ |+++.++.. .+++++.++|.+.+++.+..+ ....
T Consensus 338 ~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~ 414 (438)
T 3o7q_A 338 LCLISAFAGGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_dssp HHHHHHHCCHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred HHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 544443322222 222233333444556678899999999988 999999887 788999999999999888766 4455
Q ss_pred HHHHHHHHHHHHHH
Q 014304 392 VVLLVVVIVTSILS 405 (427)
Q Consensus 392 ~~~~~~~~~i~~~~ 405 (427)
+.+.+++.++..++
T Consensus 415 ~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 415 ELIPALCFAVIFIF 428 (438)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55544444444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=208.28 Aligned_cols=361 Identities=10% Similarity=-0.039 Sum_probs=191.8
Q ss_pred hh-ccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCc--chhHHHHHHHHHHHh
Q 014304 26 WQ-NLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTIG 101 (427)
Q Consensus 26 ~~-~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~iG 101 (427)
|| +|||+++.++.++..++.++.++++|+++++++|++.|++.|.. +....++.|+.|+++ |+...++.+....+|
T Consensus 79 dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 158 (491)
T 4aps_A 79 DRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLG 158 (491)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHH
Confidence 59 89999999999999999999999999999999999999999876 566788899999998 777788889999999
Q ss_pred HhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhh-cccC----cchhHhhcCchHHHHHHHHH--------------H
Q 014304 102 SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG-FQPE----SPRYLCLKGRTAEAHRALEK--------------I 162 (427)
Q Consensus 102 ~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~-~lpE----SP~~L~~k~r~~ea~~~l~~--------------~ 162 (427)
..+++.++..+....+||+.|.+.++..++..+... ..|+ ..+--..+.+.+|.++..++ +
T Consensus 159 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 238 (491)
T 4aps_A 159 AFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVM 238 (491)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999988887776668999999988766555433322 1121 11100011123333333222 0
Q ss_pred HhhcCCCCCCcccccccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHH-
Q 014304 163 AQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY- 241 (427)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y- 241 (427)
...++.+ .++....... . ... .......... + ++.. . ...+++.. .....+...+.....++
T Consensus 239 ~~~~~~~--~~~~~~~~~~-~-~~~--~~~~~~~~~~-~--~~~~-----~--~~~~~~~~-~~~~~~~~~~~~~~~~~~ 301 (491)
T 4aps_A 239 NLVGWNS--LPAYINLLTI-V-AIA--IPVFYFAWMI-S--SVKV-----T--STEHLRVV-SYIPLFIAAVLFWAIEEQ 301 (491)
T ss_dssp HHHSSCC--TTHHHHHHHH-H-HHH--HHHHHHHHHC----------------------CT-THHHHHHHHHHHHHHHGG
T ss_pred HhccCcc--cccchhhhhH-H-HHH--HHHHHHHHHh-h--cccc-----c--HHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 1111100 0000000000 0 000 0000000000 0 0000 0 00001111 11111111111111111
Q ss_pred ---HHHHHHHHhhccccCCCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHH-----HHHHHHHHH
Q 014304 242 ---AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT-----IMFTLSCLF 313 (427)
Q Consensus 242 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~-----~~~~~~~~~ 313 (427)
.+..+....... ...... . ......+..+++..+.+++.||+|||+... .+....++.
T Consensus 302 ~~~~~~~~~~~~~~~------------~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 302 GSVVLATFAAERVDS------------SWFPVS-W-FQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp GGTHHHHHHHHSCCC------------SSSCSG-G-GTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcc------------CccCHH-H-HhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 111111111100 000111 1 112234445566778899999999986543 333333332
Q ss_pred HHHHHhhc---------chhHHHHHHHHHHHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHHh
Q 014304 314 LLPLVTYQ---------SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 384 (427)
Q Consensus 314 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~ 384 (427)
...+.... +.+..........++.....+..+.+..|.+|++.|+++.|+.+...++|+.++|.+.+.+.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222110 112222222222233333356778999999999999999999999999999999988776544
Q ss_pred hcchhHHHHHHHHHHHHHHHHHhhccccCCCCcc
Q 014304 385 NCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 418 (427)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~l 418 (427)
. +....+..++.+++++.+..+++.|+++++..
T Consensus 448 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (491)
T 4aps_A 448 K-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ 480 (491)
T ss_dssp S-STTHHHHHTHHHHHHHHHHHHHC---------
T ss_pred c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 34456777777777777777777777776543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=188.55 Aligned_cols=334 Identities=13% Similarity=0.021 Sum_probs=180.3
Q ss_pred hhccchhHHHHHHHHHHHHHH---HhhcchhHH-HHHHHHHHhhhccccc-hhhhhhhhhccCC--CcchhHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGL---LSSFSPNYI-TLITLRCLVGVGLGSG-HVFLSWFLEFVPP--SNRGMWMVIFSSFW 98 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~---~~~~a~~~~-~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~--~~Rg~~~~~~~~~~ 98 (427)
||+|||+.++++..+++++.. ...+++... .+..+|++.|++.|.. ....+...++.++ ++|+...+......
T Consensus 68 Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 147 (417)
T 2cfq_A 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFG 147 (417)
T ss_dssp TTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSST
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHH
Confidence 599999999988887655321 123333221 3456777777776643 2222333344433 34565566666666
Q ss_pred HHhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccc
Q 014304 99 TIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 99 ~iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
.+|..+++.++..+.. .+||..|++.+++.++..+..++.||+|+. +.+.+| ++
T Consensus 148 ~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------~~---------- 201 (417)
T 2cfq_A 148 CVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVAN------------AV---------- 201 (417)
T ss_dssp TTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSSS------------SS----------
T ss_pred HHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc---cccccc------------cc----------
Confidence 7777777666554433 579999998887765555544444443321 000000 00
Q ss_pred cccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
+ + + + ++ .....++++++.+..... +...+.....++....+.|......
T Consensus 202 ---~--~-~---------------~-~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---- 250 (417)
T 2cfq_A 202 ---G--A-N---------------H-SA--FSLKLALELFRQPKLWFL---SLYVIGVSCTYDVFDQQFANFFTSF---- 250 (417)
T ss_dssp ---S--S-C---------------C-CC--CCHHHHHHHTTCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred ---c--c-c---------------c-cc--ccHHHHHHHhcCCchhhH---HHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 0 0 0 0 00 001233444543222211 1111222222222222222211100
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHh
Q 014304 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVM 338 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (427)
................+..+..+++.++.+++.||+|||+.+..+....++....+....+.+..........++..
T Consensus 251 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (417)
T 2cfq_A 251 ---FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP 327 (417)
T ss_dssp ---SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHH
T ss_pred ---HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 00000000111112234445667788899999999999998877665555443333322222221111111122222
Q ss_pred hhhHhHHhhccccCccchhhHHHHHH-HHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 014304 339 GAFTVSLIYAAEIYPTSVRSTGAGAA-NAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 339 ~~~~~~~~~~~ElfPt~~R~~~~g~~-~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~ 417 (427)
......+.+.+|.+|++.|+++.|+. +..+++|++++|.+.+.+.+..+....+.+.+++.+++.+..+++.||+|..+
T Consensus 328 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 23345688999999999999999996 67778999999999998887665555677777777888777777778877655
Q ss_pred cc
Q 014304 418 LS 419 (427)
Q Consensus 418 l~ 419 (427)
+-
T Consensus 408 ~~ 409 (417)
T 2cfq_A 408 LL 409 (417)
T ss_dssp SS
T ss_pred HH
Confidence 43
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-22 Score=192.74 Aligned_cols=119 Identities=12% Similarity=0.045 Sum_probs=105.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHHhHhH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 104 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~~~ 104 (427)
||+|||+.+.++.++..++.++.++++|+..++++|++.|++.+.. +....++.|+.|+++|++..++.+....+|..+
T Consensus 60 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 139 (375)
T 2gfp_A 60 DRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL 139 (375)
T ss_dssp TTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999876 556788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHhhhHHHHHHHH-HhhcccCcch
Q 014304 105 EAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPESPR 144 (427)
Q Consensus 105 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~-~~~~lpESP~ 144 (427)
++.++..+....+||+.+.+.++..++..+ ..+.+||+|+
T Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 998888776667999999988887766554 4567888875
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=188.98 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=95.7
Q ss_pred hhc-cchhHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHH---HHHHHH
Q 014304 26 WQN-LVRMGFLGEALVTAGAGLLSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI---FSSFWT 99 (427)
Q Consensus 26 ~~~-GRk~~l~~~~~~~~i~~~~~~~a~-~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~ 99 (427)
||+ |||+++.++.++..++.++.++++ |+..++++|++.|++.|.. +...+++.|+.|+++|++..+. .+....
T Consensus 79 dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 158 (524)
T 2xut_A 79 DRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTIN 158 (524)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence 699 999999999999999999999999 9999999999999999886 5667888999999999877666 888889
Q ss_pred HhHhHHHHHHHHhcCCCChhHHHHhhhHHHHHHHHHh
Q 014304 100 IGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 136 (427)
Q Consensus 100 iG~~~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~ 136 (427)
+|..+++.++..+....+||+.|.+.++..++..+..
T Consensus 159 ~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 159 FGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999888877666666899999998887766554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-10 Score=114.13 Aligned_cols=140 Identities=14% Similarity=0.021 Sum_probs=100.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHh----hcchhHHHHHHHHHHHHHhhhhHhHHhhcccc
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 351 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 351 (427)
..+..+...++.++.|.+.||+|||+.+..+.++.++..+.... ..+.+...+..++..++.....+....+.+|.
T Consensus 68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 147 (451)
T 1pw4_A 68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 147 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 34456667788899999999999999988877766655554444 33333323333333444444556778999999
Q ss_pred CccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 352 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 352 fPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
+|++.|+++.|+.+....+|..++|.+.+++.+..+ -...+.+.+.+.++..+...++.||++.
T Consensus 148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999999999999999888776655 4455666666666665655555567544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.1e-09 Score=103.30 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=79.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH---HhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccC
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
.....+...++.++.|.++||+|||+.+..+.++.++..+.. ....+.+...+..++..++.....+....+.+|.+
T Consensus 67 ~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~ 146 (438)
T 3o7q_A 67 QSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG 146 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc
Confidence 344556667788899999999999999988776665554443 22223232223333334444455567899999999
Q ss_pred ccchhhHHHHHHHHHhhHhHhHHHHHHHHHH
Q 014304 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~ 383 (427)
|++.|+.+.|+.+....+|..++|.+.+.+.
T Consensus 147 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 147 PESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888777
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.8e-09 Score=106.30 Aligned_cols=137 Identities=12% Similarity=-0.008 Sum_probs=95.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCcc
Q 014304 276 EFITSLAEIPGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~-~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
.....++..++.++.|+++|| +|||+.+..+..+.++..+......+.+...+..++..++.....+....+.+|.+|+
T Consensus 60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 344566677888999999999 8999999888776665555444433333333333333444444567789999999999
Q ss_pred ch--hhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccc
Q 014304 355 SV--RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 355 ~~--R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
+. |+++.++.+....+|..++|.+.+.+.+..+-...+.+.+...+++.+...+..|+
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 88 77788888899999999999999988776654455666555555555555444333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-09 Score=103.75 Aligned_cols=142 Identities=15% Similarity=0.046 Sum_probs=97.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhhhHhHHhhccccCccc
Q 014304 276 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 355 (427)
Q Consensus 276 ~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~ 355 (427)
.....+...++..+.|++.||+|||+.+..+....++.........+.+......++..++.....+....+.+|.+|++
T Consensus 41 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 120 (375)
T 2gfp_A 41 MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT 120 (375)
T ss_dssp HHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence 34445666777888999999999999888776666555444433322222222223333333445567789999999999
Q ss_pred hhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 014304 356 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 417 (427)
Q Consensus 356 ~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~~~ 417 (427)
.|+++.++.+....+|..++|.+.+.+.+..+....+.+.+.+.++..+...+..||++.++
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T 2gfp_A 121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD 182 (375)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence 99999999999999999999998887765544344556666666666554555667876543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-08 Score=101.56 Aligned_cols=135 Identities=16% Similarity=0.047 Sum_probs=91.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHhhhhHhHHhhccccCcc
Q 014304 277 FITSLAEIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 354 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~-GRR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt 354 (427)
.+..+...++.++.|+++||+ |||+.+..+.++.++..+...... +.+......++..++.....+....+.+|.+|+
T Consensus 61 ~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 140 (524)
T 2xut_A 61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ 140 (524)
T ss_dssp HHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence 344556677888999999999 999998887766655554444433 333222223333333344456778999999999
Q ss_pred chhhHHHHH---HHHHhhHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Q 014304 355 SVRSTGAGA---ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 411 (427)
Q Consensus 355 ~~R~~~~g~---~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~p 411 (427)
+.|+++.+. .+....+|+.++|.+.+.+.+..+....+.+.+.+.+++.+...+..|
T Consensus 141 ~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 141 SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999876666 888889999999988887776655445566666665555555444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.7e-07 Score=89.44 Aligned_cols=104 Identities=17% Similarity=0.049 Sum_probs=71.2
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh-----------------cchh-HHHHHHHHHHHHHhhhh
Q 014304 280 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-----------------QSNI-LTTGLLFGARMCVMGAF 341 (427)
Q Consensus 280 ~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~~~~~~ 341 (427)
.++..+|.++.|++.||+|||+.+..+.++..+..+..++. .++. ...+.=++..++..+..
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999888766555444333210 1111 11122233334445566
Q ss_pred HhHHhhccccCccchhhHHHHHHHHHhhHhHhHHHHHHHHHH
Q 014304 342 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 383 (427)
Q Consensus 342 ~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~ 383 (427)
+....|.+|..|++.|+...++......+|..+++.....+.
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 788999999999999999999988887777777766555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.5e-07 Score=90.34 Aligned_cols=118 Identities=8% Similarity=-0.033 Sum_probs=90.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHH-HHHHHHHhHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~iG~~ 103 (427)
||+|||+.+..+..+..++.+..+++++...+++..++.|++.+.. +....+..|..|++.||...++ .+....+|..
T Consensus 284 dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~ 363 (417)
T 2cfq_A 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH
Confidence 6999999999888888888778888888888888888888886654 4456788999999999998777 4777778888
Q ss_pred HHHHHHHHhcCCCChhHHHHhhhHHHHHHHHH-hhcccCcc
Q 014304 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESP 143 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP 143 (427)
+++.+...+....+|+..|.+.++..++..+. +...||.+
T Consensus 364 ~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 88777666555567888888877776665444 34455544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 427 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 5e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 46.2 bits (108), Expect = 5e-06
Identities = 42/394 (10%), Positives = 102/394 (25%), Gaps = 50/394 (12%)
Query: 29 LVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL-GSGHVFLSWFLEFVPPSNR 87
+ G + A V G + + + + L L G + + R
Sbjct: 91 FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER 150
Query: 88 GMWMVIFSSFWTIGSVSEAI--GAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRY 145
G + +++ +G + + L + + L ++P+
Sbjct: 151 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS 210
Query: 146 LCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT 205
L + + + + +L ++ +
Sbjct: 211 CGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY-------------------------- 244
Query: 206 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH 265
LLW + N F Y ++ + + +
Sbjct: 245 -----------------VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS 287
Query: 266 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL 325
+L + G + + G + + + + +
Sbjct: 288 SWAYFLYEYAGIPGTL--LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 345
Query: 326 TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 385
+ + G + ++A E+ P T AG G +GG V V +
Sbjct: 346 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 405
Query: 386 CH--QMTAVVLLVVVIVTSILSVMLIPFETKGQE 417
+V++ I+ IL ++++ E + E
Sbjct: 406 FFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 439
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.84 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.12 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.67 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.2e-25 Score=217.87 Aligned_cols=349 Identities=13% Similarity=0.103 Sum_probs=212.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSP----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI 100 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~----~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 100 (427)
||+|||+++.++.++.+++.++.++++ ++.+++++|++.|++.|.. +....++.|+.|+++|+++.++.+.++.+
T Consensus 84 Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 163 (447)
T d1pw4a_ 84 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 163 (447)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred HHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccch
Confidence 699999999999999999999988775 6778999999999999876 56677889999999999999999999999
Q ss_pred hHhHHHHHHHHh-cCCCChhHHHHhhhHHHHHHH-HHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCcccccc
Q 014304 101 GSVSEAIGAWII-MPRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 178 (427)
Q Consensus 101 G~~~~~~~~~~~-~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~~ 178 (427)
|.++++.+.... ....+||+.+.+.+++.++.. +.+.+++|.|+....... +|.
T Consensus 164 g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------------------- 219 (447)
T d1pw4a_ 164 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EEY----------------------- 219 (447)
T ss_dssp HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TTT-----------------------
T ss_pred hhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh-hhh-----------------------
Confidence 998887665543 334689999888877766554 445567777753211100 000
Q ss_pred cccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 179 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 258 (427)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 258 (427)
+.++.+ + ..+ +.+++........+..++.+ ..+......+......++...+.+.....
T Consensus 220 ---~~~~~~---~----~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 278 (447)
T d1pw4a_ 220 ---KNDYPD---D----YNE---KAEQELTAKQIFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKE----- 278 (447)
T ss_dssp ---CCC-----------------------CCTHHHHHHTSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHBTT-----
T ss_pred ---hhhccc---c----hhh---ccccccchhhHHHHHHHcCc---hHHHHHHHhhhhhhhhhcchhhhhhhccc-----
Confidence 000000 0 000 00000000111222333222 22222223333444445555554433211
Q ss_pred CCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH-HHh--h--cchhHHHHHHHHH
Q 014304 259 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LVT--Y--QSNILTTGLLFGA 333 (427)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~-~~~--~--~~~~~~~~~~~~~ 333 (427)
..+.+.........+..+..+++.++++++.||.+||...........+.... ... . .+.+......+..
T Consensus 279 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (447)
T d1pw4a_ 279 -----VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 353 (447)
T ss_dssp -----BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred -----ccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 01112222233345556777888999999999999876443332222221111 111 1 1222222333333
Q ss_pred HHHHhhhhHhHHhhccccCccchhhHHHHHHHHHhhHh-HhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccc
Q 014304 334 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIG-GMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 412 (427)
Q Consensus 334 ~~~~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~~~~-~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pE 412 (427)
.++..+.....+.+..|.+|++.|+++.|+.+.+++++ .+++|.+.+++.+..+....+.+++++.+++.++.+++.++
T Consensus 354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556678899999999999999999999999985 56678898988888775566666676666666666555433
Q ss_pred CCCCccccccccc
Q 014304 413 TKGQELSDTVDFT 425 (427)
Q Consensus 413 tk~~~l~e~~~~~ 425 (427)
.+ |..||..+|.
T Consensus 434 ~~-~r~~~~~~e~ 445 (447)
T d1pw4a_ 434 EK-RRHEQLLQEL 445 (447)
T ss_dssp HH-HHHHGGGGGS
T ss_pred cc-ccHHHHHHhC
Confidence 33 3334444443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=8.5e-20 Score=174.40 Aligned_cols=335 Identities=10% Similarity=-0.040 Sum_probs=187.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHH----HHHHHhhhccccc-hhhhhhhhhccCC--CcchhHHHHHHHHH
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLI----TLRCLVGVGLGSG-HVFLSWFLEFVPP--SNRGMWMVIFSSFW 98 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~----v~R~l~G~g~G~~-~~~~~~~~E~~p~--~~Rg~~~~~~~~~~ 98 (427)
||+|||+.++++.....++..+..+.++..... +.+++.|.+.+.. ........+..++ +++...........
T Consensus 68 Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (417)
T d1pv7a_ 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFG 147 (417)
T ss_dssp HHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhh
Confidence 599999999999999999998888877766654 4444444444433 2222222222222 22333455555666
Q ss_pred HHhHhHHHHHHHHhcCCCChhHHHHhh-hHHHHHHHHHhhcccCcchhHhhcCchHHHHHHHHHHHhhcCCCCCCccccc
Q 014304 99 TIGSVSEAIGAWIIMPRLDWRWLLGLS-SIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVA 177 (427)
Q Consensus 99 ~iG~~~~~~~~~~~~~~~~WR~~~~~~-~i~~~i~~~~~~~lpESP~~L~~k~r~~ea~~~l~~~~~~~~~~~~~~~~~~ 177 (427)
..|..+++.++..... .+|+..+... ....++..+..+.+||+|+....+ ++.+ ..+
T Consensus 148 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~~-------- 205 (417)
T d1pv7a_ 148 CVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA---NAVG----------ANH-------- 205 (417)
T ss_dssp HHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS---HHHH----------SCC--------
T ss_pred cccccccccccccccc-ccccccccchhhHHHHHHHHHHHHhcccccchhhh---hhhh----------hhc--------
Confidence 6666666655554433 4555555444 444444556667788888642111 1100 000
Q ss_pred ccccCCCCCCCCccchhccccCCCCCccCCCchhhHHHHhcCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccC
Q 014304 178 RRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL-WLLLFGNSFAYYAVVLLISELSSLDTR 256 (427)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~l~~~~~~ 256 (427)
+ ++ .........+.+..+..... .......................
T Consensus 206 -------~-------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 252 (417)
T d1pv7a_ 206 -------S-------------------AF---SLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA---- 252 (417)
T ss_dssp -------C-------------------CC---CHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS----
T ss_pred -------c-------------------cc---cccccccccccccccchhhhhHHHHHHHHhhhcccccccccccc----
Confidence 0 00 00111122222222221111 11111111111111111111000
Q ss_pred CCCCCccCCCCCChhHHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 014304 257 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 336 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (427)
.................+...++..+.+.+.||.|||+.+..+..+.++..+.+....+.+.......+..++
T Consensus 253 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 325 (417)
T d1pv7a_ 253 -------TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE 325 (417)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred -------ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHH
Confidence 0000001111222344455666777889999999999998887777766655555444444333333333444
Q ss_pred HhhhhHhHHhhccccCccchhhHHHHHHHHHh-hHhHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccCCC
Q 014304 337 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 415 (427)
Q Consensus 337 ~~~~~~~~~~~~~ElfPt~~R~~~~g~~~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~pEtk~ 415 (427)
....++..+.+..|.+|++.|+++.|+...+. .+|+.++|.+.+++.+..+....+++++++.+++.++..++.++++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 44556778899999999999999999977654 58999999999999888776677888888887777777777667766
Q ss_pred Ccccccc
Q 014304 416 QELSDTV 422 (427)
Q Consensus 416 ~~l~e~~ 422 (427)
.++++.+
T Consensus 406 ~~~~r~~ 412 (417)
T d1pv7a_ 406 LSLLRRQ 412 (417)
T ss_dssp TTHHHHH
T ss_pred cchhHhh
Confidence 6665433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.8e-09 Score=103.39 Aligned_cols=137 Identities=14% Similarity=0.043 Sum_probs=91.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHHHhhhhHhHHhhccccC
Q 014304 277 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY----QSNILTTGLLFGARMCVMGAFTVSLIYAAEIY 352 (427)
Q Consensus 277 ~i~~~~~~~g~~~~~~l~d~~GRR~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 352 (427)
....++..++.++.|.++||+|||+.+..+.++.++..+..... .+.+.....-++..++....++....+.+|.+
T Consensus 66 s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 145 (447)
T d1pw4a_ 66 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW 145 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 34456677888999999999999999988776665544433321 11222222223333444445567889999999
Q ss_pred ccchhhHHHHHHHHHhhHhHhHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHhhccccC
Q 014304 353 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ-MTAVVLLVVVIVTSILSVMLIPFET 413 (427)
Q Consensus 353 Pt~~R~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~l~pEt 413 (427)
|++.|+++.|+.+....+|+.++|.+...+....+. ...+++.+.+.++..++.+++++|+
T Consensus 146 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 146 SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence 999999999999999999999999887766654332 2334555555555555555555444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=1.5e-08 Score=94.81 Aligned_cols=110 Identities=7% Similarity=-0.033 Sum_probs=93.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhccccc-hhhhhhhhhccCCCcchhHHHHH-HHHHHHhHh
Q 014304 26 WQNLVRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIF-SSFWTIGSV 103 (427)
Q Consensus 26 ~~~GRk~~l~~~~~~~~i~~~~~~~a~~~~~l~v~R~l~G~g~G~~-~~~~~~~~E~~p~~~Rg~~~~~~-~~~~~iG~~ 103 (427)
||+|||+.+.++.++..++.+...+.+|...+++.-++.|++.|.. +....++.|..|++.||+..++. +....+|..
T Consensus 284 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 363 (417)
T d1pv7a_ 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH
T ss_pred cccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999876 55677889999999999998864 556778888
Q ss_pred HHHHHHHHhcCCCChhHHHHhhhHHHHHHHHH
Q 014304 104 SEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 135 (427)
Q Consensus 104 ~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~ 135 (427)
+++.+...+....||+..+.+.++..++..++
T Consensus 364 i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 395 (417)
T d1pv7a_ 364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 88877766666679999988877766654443
|