Citrus Sinensis ID: 014327

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------

MDKDKSLSHGGIPPPSGRYSSFSPPGNNNFNVKPELPSSSSFPPLAPGGSSSDGSHFGHQSDSNRFSHDLSRMHDNPPKNVGHRRAHSEILTLPDDISFDSDLGVVGGADGPSLSDETEEDLLSMYLDMDKFNASTATSGFQVGEPSAAAAPAPTSAAAAGSGISSVENVGVGSTERPRIRHQHSQSMDGSTSIKPEMLMSASDEAPSADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNGGPMMNYPSFGAGQQFYPNNQAMHTLLTAQQFQQLQIHSQKQQQQFQQHQLHQMQQQQLQQQQQEQQQQTGEIKMRGSVPSPNQKENTSDVNPSISKD

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc

********************************************************************************************LPDD**********************************************************************************************************************************************************YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME*******ALNDALKEEIQHLKVLT*******************Q******QAMHTLLT**********************************************************************

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MDKDKSLSHGGIPPPSGRYSSFSPPGNNNFNVKPELPSSSSFPPLAPGGSSSDGSHFGHQSDSNRFSHDLSRMHDNPPKNVGHRRAHSEILTLPDDISFDSDLGVVGGADGPSLSDETEEDLLSMYLDMDKFNASTATSGFQVGEPSAAAAPAPTSAAAAGSGISSVENVGVGSTERPRIRHQHSQSMDGSTSIKPEMLMSASDEAPSADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIQHLKVLTGQAMPNGGPMMNYPSFGAGQQFYPNNQAMHTLLTAQQFQQLQIHSQKQQQQFQQxxxxxxxxxxxxxxxxxxxxxxxxIKMRGSVPSPNQKENTSDVNPSISKD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Transcription factor RF2a	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.	probable	Q69IL4

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2WT7, chain A
Confidence level:confident
Coverage over the Query: 228-283
View the alignment between query and template
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Template: 3OJA, chain B
Confidence level:probable
Coverage over the Query: 253-322
View the alignment between query and template
View the model in PyMOL

Template: 1SKN, chain P
Confidence level:probable
Coverage over the Query: 207-255
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View the model in PyMOL

Template: 1YVL, chain A
Confidence level:probable
Coverage over the Query: 259-398
View the alignment between query and template
View the model in PyMOL