Citrus Sinensis ID: 014383

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----
MSFRSIVRDVRDSFGSLSRRSFDFRLTGHHGGKSHGSSNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
cccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccEEEEEEEccccccEEEEEEccccccccccccEEEEEEEcccccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEccccEEEEEEEccEEEEEcccccccccccccccccccccEEEEEEcccccEEEEEEcccccHHHHHHHHHHHcccccccc
ccHHHHHHHHHccccccccccEEEEEcccccccccccccccccccHHHHccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEccEEcccccccccEEEEEEEEccccccEEEEcccccHHccccccEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEcccccccccccccccccccEccccccccccccccEEEEEEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEccccccccccccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
MSFRSIVRDVRdsfgslsrrsfdfrltghhggkshgssndlhdqniviqnscwaslppeLLCDVIKRLEesesswparKHVVACAAVCRSWRAMCKEIVrspefcgkltfpvslkqpgardgtiQCFIKrdksnltyHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISmdadnisrsssTYIGKLrsnflgtkfiiydtqpphtsanitpsgctsrrfyskkvspkvpsgsynIAQIAYELNVlgtrgprrmhcimhsipassidvggsvpgqpellprsledsfrsisfsksldhsvdfssarfseigalreddedgklrplilknkpprwheQLQCWCLNFRGRVTVASVKNFQLIaatqpaagaptpsqpappehdKIILQFGkvgkdmftmdyryplSAFQAFAICLSSfdtklace
msfrsivrdvrdsfgslsrrSFDFRLTGHHGGKSHGSSNDLHDQNIVIQNSCWASLPPELLCDVIKRLEesesswparkhVVACAAVCRSWRAMCKEIVRSPEFCGKltfpvslkqpgarDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFllsakrtrrttcteyvismdadnisrssSTYIGKLRSNFLGTKFIIYDTqpphtsanitpsgctsrRFYSKKvspkvpsgsynIAQIAYELNVLGTRGPRRMHCIMHSIpassidvggsVPGQPELLPRSLEDSFRSISFsksldhsvdfsSARFSEigalreddedgklrplilknkpprwhEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
MSFRSIVRDVRDSFGSLSRRSFDFRLTghhggkshgssNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYskkvspkvpsGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIaatqpaagaptpsqpappEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
******************************************DQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQ*****************FY*********SGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPA************************************************************PLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAA*******************KIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTK****
*SFRSIVRDVRD******************************************SLPPELLCDV********************AAV*************************SLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPP*****************************YNIAQIAYELNVLGTRGPRRMHCIM**************************************************************KLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIA*****************EHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
**********RDSFGSLSRRSFDFRLTG**********NDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQ*************PEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
***********DSFGSLSRRSFDFRLT*****************N*VIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHT*******************SPKVPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLP***EDSF**********************************LRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAT****************HDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLAC*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFRSIVRDVRDSFGSLSRRSFDFRLTGHHGGKSHGSSNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query425 2.2.26 [Sep-21-2011]
Q75HX5445 Tubby-like F-box protein yes no 1.0 0.955 0.764 0.0
Q2QXB2445 Tubby-like F-box protein no no 1.0 0.955 0.710 0.0
Q9FRH7445 Tubby-like F-box protein yes no 1.0 0.955 0.752 1e-179
Q9ZP59455 Tubby-like F-box protein no no 0.983 0.918 0.714 1e-177
Q53PP5440 Tubby-like F-box protein no no 0.997 0.963 0.702 1e-175
Q7XSV4462 Tubby-like F-box protein no no 1.0 0.919 0.683 1e-174
Q944S3429 Tubby-like F-box protein no no 0.974 0.965 0.681 1e-172
Q8LJA9448 Tubby-like F-box protein no no 1.0 0.948 0.694 1e-172
Q69U54451 Tubby-like F-box protein no no 1.0 0.942 0.671 1e-166
Q10LG8403 Tubby-like F-box protein no no 0.948 1.0 0.557 1e-134
>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1 Back     alignment and function desciption
 Score =  638 bits (1646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/445 (76%), Positives = 377/445 (84%), Gaps = 20/445 (4%)

Query: 1   MSFRSIVRDVRDSFGSLSRRSFDFRL------TGHHGGKSHGSSNDLHDQNIVIQNSCWA 54
           MSFRSIVRDVRDSFGSLSRRSF+  L      TGHH GKS  + ++L D +++IQ S WA
Sbjct: 1   MSFRSIVRDVRDSFGSLSRRSFEVTLAGLSGLTGHHRGKSQSTVHELCDADLIIQESRWA 60

Query: 55  SLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSL 114
           SLPPELL DVI+RLE SES+WP+RK VV+CAAVC++WR MCKEIV SPEFCGKLTFP+SL
Sbjct: 61  SLPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSL 120

Query: 115 KQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMD 174
           KQPG RDG IQCFIKRDKS  TYHL+LCLS A+L ++GKFLLSAKR R+TTCTEYVISMD
Sbjct: 121 KQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMD 180

Query: 175 ADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPSG 234
           ADNISRSSSTYIGKLRSNFLGTKFIIYDTQP +  A I P G +SRRF SKKVSPK+PSG
Sbjct: 181 ADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFNSKKVSPKMPSG 240

Query: 235 SYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPE-LLPRSLEDSFRS-I 292
           SYNIAQ+ YELNVLGTRGPRRMHC+MHSIPASS++ GG VPGQPE ++PR+ E+SFRS  
Sbjct: 241 SYNIAQVTYELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEESFRSTT 300

Query: 293 SFSKS--LDHSV------DFSSARFSEI-GALREDDEDG--KLRPLILKNKPPRWHEQLQ 341
           SFSKS  +D S+      DFSSARFS+I G     DE+G  K RPL+L+NK PRWHEQLQ
Sbjct: 301 SFSKSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNKAPRWHEQLQ 360

Query: 342 CWCLNFRGRVTVASVKNFQLI-AATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMD 400
           CWCLNFRGRVT+ASVKNFQLI A  QP AGAPTPSQPAPPE DKIILQFGKV KDMFTMD
Sbjct: 361 CWCLNFRGRVTIASVKNFQLIAAPAQPPAGAPTPSQPAPPEQDKIILQFGKVAKDMFTMD 420

Query: 401 YRYPLSAFQAFAICLSSFDTKLACE 425
           YRYPLSAFQAFAICLSSFDTKLACE
Sbjct: 421 YRYPLSAFQAFAICLSSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1 Back     alignment and function description
>sp|Q9FRH7|TLP10_ARATH Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZP59|TLP1_ARATH Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1 Back     alignment and function description
>sp|Q53PP5|TLP13_ORYSJ Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1 Back     alignment and function description
>sp|Q7XSV4|TLP7_ORYSJ Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1 Back     alignment and function description
>sp|Q944S3|TLP5_ARATH Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1 Back     alignment and function description
>sp|Q8LJA9|TLP3_ORYSJ Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1 Back     alignment and function description
>sp|Q69U54|TLP12_ORYSJ Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1 Back     alignment and function description
>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
356525920427 PREDICTED: tubby-like F-box protein 8-li 1.0 0.995 0.875 0.0
225447793424 PREDICTED: tubby-like F-box protein 8-li 0.997 1.0 0.884 0.0
357445667427 Tubby-like F-box protein [Medicago trunc 0.997 0.992 0.880 0.0
302399103424 TLP domain class transcription factor [M 0.997 1.0 0.870 0.0
147815429 579 hypothetical protein VITISV_003183 [Viti 0.983 0.721 0.883 0.0
225460668425 PREDICTED: tubby-like F-box protein 8-li 1.0 1.0 0.851 0.0
255566602424 phosphoric diester hydrolase, putative [ 0.997 1.0 0.861 0.0
449511275428 PREDICTED: tubby-like F-box protein 8-li 1.0 0.992 0.845 0.0
224066676424 f-box family protein [Populus trichocarp 0.997 1.0 0.849 0.0
449445860428 PREDICTED: tubby-like F-box protein 8-li 1.0 0.992 0.841 0.0
>gi|356525920|ref|XP_003531569.1| PREDICTED: tubby-like F-box protein 8-like [Glycine max] Back     alignment and taxonomy information
 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/427 (87%), Positives = 401/427 (93%), Gaps = 2/427 (0%)

Query: 1   MSFRSIVRDVRDSFGSLSRRSFDFRLTGHHGGKSHGSSNDLHDQNIVIQNSCWASLPPEL 60
           MSFRSIVRDVRDSFGSLSRRSFD RLTGHH GKS GS  DLHDQ +VIQNS WASLPPEL
Sbjct: 1   MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSQGSVQDLHDQPLVIQNSRWASLPPEL 60

Query: 61  LCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGAR 120
           L D+I+RLEESE++WPARKHVVACAAVC+SWR MCK+IV+SPEFCGKLTFPVSLKQPG R
Sbjct: 61  LFDIIRRLEESENTWPARKHVVACAAVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPR 120

Query: 121 DGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISR 180
           DG IQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTT TEYVISMDADNISR
Sbjct: 121 DGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISR 180

Query: 181 SSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITP--SGCTSRRFYSKKVSPKVPSGSYNI 238
           SS+TYIGKLRSNFLGT+FII DTQPP++SA+I P  +G TSRRFYSKKVSPKVPSGSYNI
Sbjct: 181 SSNTYIGKLRSNFLGTRFIICDTQPPYSSAHICPPMTGKTSRRFYSKKVSPKVPSGSYNI 240

Query: 239 AQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSL 298
           AQ+ YELNVLGTRGPR+MHC+MHSIPAS++D GG+VPGQPELLPR LEDSFRSISFSKSL
Sbjct: 241 AQVTYELNVLGTRGPRKMHCVMHSIPASALDAGGTVPGQPELLPRPLEDSFRSISFSKSL 300

Query: 299 DHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKN 358
           D S++FSS+RFSEIG    +D+DGK+RPL+LKNKPPRWHEQLQCWCLNFRGRVTVASVKN
Sbjct: 301 DRSIEFSSSRFSEIGESIIEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKN 360

Query: 359 FQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSF 418
           FQLIAATQP AGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSF
Sbjct: 361 FQLIAATQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSF 420

Query: 419 DTKLACE 425
           DTKLACE
Sbjct: 421 DTKLACE 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225447793|ref|XP_002266692.1| PREDICTED: tubby-like F-box protein 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357445667|ref|XP_003593111.1| Tubby-like F-box protein [Medicago truncatula] gi|355482159|gb|AES63362.1| Tubby-like F-box protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|302399103|gb|ADL36846.1| TLP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|147815429|emb|CAN68201.1| hypothetical protein VITISV_003183 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225460668|ref|XP_002267914.1| PREDICTED: tubby-like F-box protein 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255566602|ref|XP_002524285.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223536376|gb|EEF38025.1| phosphoric diester hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449511275|ref|XP_004163912.1| PREDICTED: tubby-like F-box protein 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224066676|ref|XP_002302178.1| f-box family protein [Populus trichocarpa] gi|222843904|gb|EEE81451.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449445860|ref|XP_004140690.1| PREDICTED: tubby-like F-box protein 8-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
TAIR|locus:2032950445 TLP10 "AT1G25280" [Arabidopsis 0.997 0.952 0.704 6.1e-158
TAIR|locus:2194686429 TLP5 "AT1G43640" [Arabidopsis 0.976 0.967 0.630 5.5e-141
TAIR|locus:2025327455 TLP1 "AT1G76900" [Arabidopsis 0.847 0.791 0.713 2.6e-134
TAIR|locus:2062121394 TLP2 "AT2G18280" [Arabidopsis 0.677 0.730 0.496 4.5e-105
TAIR|locus:2036730413 TLP6 "AT1G47270" [Arabidopsis 0.529 0.544 0.551 1.2e-102
TAIR|locus:2180034389 TLP11 "AT5G18680" [Arabidopsis 0.583 0.637 0.462 7e-92
TAIR|locus:2081101380 TLP9 "AT3G06380" [Arabidopsis 0.508 0.568 0.511 2.4e-91
TAIR|locus:2009610379 TLP7 "AT1G53320" [Arabidopsis 0.48 0.538 0.471 2.8e-84
UNIPROTKB|E1B8A6508 TUB "Uncharacterized protein" 0.192 0.161 0.536 1.7e-35
MGI|MGI:2651573505 Tub "tubby candidate gene" [Mu 0.192 0.162 0.536 3.3e-35
TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1539 (546.8 bits), Expect = 6.1e-158, P = 6.1e-158
 Identities = 314/446 (70%), Positives = 348/446 (78%)

Query:     1 MSFRSIVRDVRDSFGSLSRRSFDFRLTXX-------XXXXXXXXXNDLHDQNIVIQNSCW 53
             MSFR IV+D+RD FGSLSRRSFDFRL+                   DL    +++Q S W
Sbjct:     1 MSFRGIVQDLRDGFGSLSRRSFDFRLSSLHKGKAQGSSFREYSSSRDLLSP-VIVQTSRW 59

Query:    54 ASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVS 113
             A+LPPELL DVIKRLEESES+WPARKHVVACA+VCRSWRAMC+EIV  PE CGKLTFPVS
Sbjct:    60 ANLPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPVS 119

Query:   114 LKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISM 173
             LKQPG RD  IQCFIKRDKS LT+HLFLCLSPALLVENGKFLLSAKRTRRTT TEY+ISM
Sbjct:   120 LKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIISM 179

Query:   174 DADNISRSSSTYIGKLRSNFLGTKFIIYDTQPP-HTSANITPSGCTSR-RFYXXXXXXXX 231
             DADNISRSS++Y+GKLRSNFLGTKF++YDTQPP +TS++   +  TSR RF+        
Sbjct:   180 DADNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSRFHSRRVSPKV 239

Query:   232 XXGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELL---PRSLEDS 288
               GSYNIAQI YELNVLGTRGPRRMHCIM+SIP SS++ GGSVP QPE L   P SL+DS
Sbjct:   240 PSGSYNIAQITYELNVLGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAPYSLDDS 299

Query:   289 FRS-ISFSKS-LDH-SVDFSSARFSEIGALRED-DEDGKLRPLILKNKPPRWHEQLQCWC 344
             FRS ISFSKS  DH S+DFSS+RFSE+G   +D +E+   RPLILKNK PRWHEQLQCWC
Sbjct:   300 FRSNISFSKSSFDHRSLDFSSSRFSEMGISCDDNEEEASFRPLILKNKQPRWHEQLQCWC 359

Query:   345 LNFRGRVTVASVKNFQLIXXXX-----XXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTM 399
             LNFRGRVTVASVKNFQL+                       E DK+ILQFGKVGKDMFTM
Sbjct:   360 LNFRGRVTVASVKNFQLVAARQPQPQGTGAAAAPTSAPAHPEQDKVILQFGKVGKDMFTM 419

Query:   400 DYRYPLSAFQAFAICLSSFDTKLACE 425
             DYRYPLSAFQAFAICLSSFDTKLACE
Sbjct:   420 DYRYPLSAFQAFAICLSSFDTKLACE 445
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0010359 "regulation of anion channel activity" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0005829 "cytosol" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0009620 "response to fungus" evidence=IMP
TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1B8A6 TUB "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2651573 Tub "tubby candidate gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q75HX5TLP8_ORYSJNo assigned EC number0.76401.00.9550yesno
Q53PP5TLP13_ORYSJNo assigned EC number0.70290.99760.9636nono
Q2QXB2TLP14_ORYSJNo assigned EC number0.71011.00.9550nono
Q9ZP59TLP1_ARATHNo assigned EC number0.71420.98350.9186nono
Q9FRH7TLP10_ARATHNo assigned EC number0.75281.00.9550yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
pfam01167243 pfam01167, Tub, Tub family 1e-132
pfam1293747 pfam12937, F-box-like, F-box-like 2e-04
>gnl|CDD|216339 pfam01167, Tub, Tub family Back     alignment and domain information 
 Score =  379 bits (976), Expect = e-132
 Identities = 135/305 (44%), Positives = 168/305 (55%), Gaps = 64/305 (20%)

Query: 117 PGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENG--KFLLSAKRTRRTTCTEYVISMD 174
           P  R GT+QC I RDKS + Y LF      L  ENG  KFLL+A++ +R+  + Y+IS+D
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 175 ADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPSG 234
             ++SRS   YIGKLRSNFLGTKF ++D           P            V+PKV SG
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVN-------PQKARL-------VTPKVASG 106

Query: 235 SYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISF 294
              +A + YE NVLG RGPR+M  IM  IP+S       VP QP     SL         
Sbjct: 107 RQELAAVCYETNVLGFRGPRKMTVIMPGIPSSHE----RVPIQPLNDQESLLS------- 155

Query: 295 SKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVA 354
                                R  +++ +   L+L NK PRW++QLQ + LNF GRVT A
Sbjct: 156 ---------------------RWQNKNKE-SLLVLHNKAPRWNDQLQSYVLNFHGRVTQA 193

Query: 355 SVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAIC 414
           SVKNFQ++ A+               + D I+LQFG+V KDMFTMDYRYPLSAFQAFAIC
Sbjct: 194 SVKNFQIVHAS---------------DPDYIVLQFGRVAKDMFTMDYRYPLSAFQAFAIC 238

Query: 415 LSSFD 419
           LSSFD
Sbjct: 239 LSSFD 243

Length = 243
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 425
KOG2502355 consensus Tub family proteins [General function pr 100.0
PF01167246 Tub: Tub family; InterPro: IPR000007 Tubby, an aut 100.0
KOG2503565 consensus Tubby superfamily protein TULP4 [General 99.75
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.63
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.53
smart0025641 FBOX A Receptor for Ubiquitination Targets. 96.69
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 96.64
PF12043346 DUF3527: Domain of unknown function (DUF3527); Int 96.4
KOG2997366 consensus F-box protein FBX9 [General function pre 94.7
>KOG2502 consensus Tub family proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-129  Score=966.41  Aligned_cols=354  Identities=57%  Similarity=0.888  Sum_probs=308.8

Q ss_pred             CcchhhhhhhhcccCccccccceeeecccCCCccCCCCCcccccccccccCccCCCChHHHHHHHHHhhhcCCCCCCccc
Q 014383            1 MSFRSIVRDVRDSFGSLSRRSFDFRLTGHHGGKSHGSSNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKH   80 (425)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~lppell~dv~~r~e~se~~wp~r~~   80 (425)
                      |+++++++++++..      +++.+....+++. +..+++... +.....+.|++||||||+|+|+|+||+|+.||+|++
T Consensus         1 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~-~s~~~~~~~~~l~~~~L~d~~~r~eese~~wp~r~~   72 (355)
T KOG2502|consen    1 MGEDGPVRDPEDKS------SFRAPQGSGTKGP-EDKSEDSGF-PSPSDQSLWAALPPELLSDVLKRDEESEDTWPSRRN   72 (355)
T ss_pred             CCccCccCCCCccc------chhcccccccccC-CCccCCcCC-ccccccchhhcCCHhHHHHHhhhccccccccccccc
Confidence            88999999998877      5555544323322 333333211 111122899999999999999999999999999999


Q ss_pred             eeeccccchhHHHHHHHhhcCCcccccccccccccCCCCCCceEEEEEEEecCCceEEEEeeccccccc-cCceEEEEEE
Q 014383           81 VVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLV-ENGKFLLSAK  159 (425)
Q Consensus        81 vvaca~vc~~wr~~~keiv~~pe~~g~ltfpisLkqPgPrd~~iQCfIkR~K~~~tY~LYL~l~~~~~~-e~gKfLLaAr  159 (425)
                      ||+||+||+.||++++|||+.||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.++.+. |++|||||||
T Consensus        73 vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaar  152 (355)
T KOG2502|consen   73 VVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAAR  152 (355)
T ss_pred             cccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeeee
Confidence            999999999999999999999999999999999999999999999999999999999999999886554 6799999999


Q ss_pred             eeccCCceeEEEEccCCCcccCCCceeeEeeeceeecEEEEecCCCCCCCCCCCCCCCCcccccccccCCCCCCCceeeE
Q 014383          160 RTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPSGSYNIA  239 (425)
Q Consensus       160 K~rr~t~S~YiISld~ddlSr~S~~yVGKLRSNflGTkFtIYD~gpp~~~a~~~~~~r~srr~~sk~vsp~vp~~~~eva  239 (425)
                      |+||+||+|||||+|++||||++++||||||||||||||||||+|.           +.+|+++      ++|+++|+||
T Consensus       153 k~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~-----------~~~r~~~------~~~~~~~~la  215 (355)
T KOG2502|consen  153 KRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGV-----------NPSRRFN------KVPSGRQELA  215 (355)
T ss_pred             eecccccceeEEeccccccccCccceeeeeecccccceEEEecCCC-----------Ccccccc------cCCcccceee
Confidence            9999999999999999999999999999999999999999999974           2234544      6899999999


Q ss_pred             EEEEeeeccCcCCCceeEEeecCCCcccccCCCCCCCCCcccCCcccccccccccccCCCcccccccccccccccccccc
Q 014383          240 QIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDD  319 (425)
Q Consensus       240 ~V~Ye~NvLg~rGPRrM~cim~~IP~~~~~~gg~~P~q~~~~~~~~~~sf~~~~~~k~~~~~~~~~s~r~~~~~~~~~~~  319 (425)
                      +|+||+||||+||||||+|+|++||.++  ++|++|.|++.....  ..|+                  .+         
T Consensus       216 ~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~--~l~r------------------~~---------  264 (355)
T KOG2502|consen  216 AVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS--LLFR------------------SQ---------  264 (355)
T ss_pred             EEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc--hhhh------------------cc---------
Confidence            9999999999999999999999999987  899999999732111  1111                  11         


Q ss_pred             cCCCcccEEeccCCCcccccccceEeecCCeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCcEEEEeeccCCCeeEE
Q 014383          320 EDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTM  399 (425)
Q Consensus       320 ~~~~~~~lvL~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~~~~~g~~~~~~~~~~~~~~iiLQFGKv~kd~Ftm  399 (425)
                      .+.++++++|+||.|+|||++||||||||||||+||||||||||+               .++++|||||||||||+|||
T Consensus       265 ~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~---------------~~p~~iiLQFGrV~kD~FTm  329 (355)
T KOG2502|consen  265 NKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA---------------LDPEYIILQFGRVGKDVFTM  329 (355)
T ss_pred             ccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc---------------CCCCEEEEEeeeeccceeee
Confidence            124689999999999999999999999999999999999999993               35699999999999999999


Q ss_pred             EccCCCCHHHHHHHHHHcCccccccC
Q 014383          400 DYRYPLSAFQAFAICLSSFDTKLACE  425 (425)
Q Consensus       400 D~ryPlS~~QAFaI~LsSfdtKlACE  425 (425)
                      ||||||||||||||||||||+|||||
T Consensus       330 DYrYPlSa~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  330 DYRYPLSAFQAFAICLSSFDTKLACE  355 (355)
T ss_pred             cccCccHHHHHHHHHHHhccccccCC
Confidence            99999999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function Back     alignment and domain information
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
1s31_A273 Crystal Structure Analysis Of The Human Tub Protein 1e-43
1c8z_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Leng 3e-43
2fim_A276 Structure Of The C-Terminal Domain Of Human Tubby-L 4e-43
1i7e_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Boun 9e-43
3c5n_A246 Structure Of Human Tulp1 In Complex With Ip3 Length 6e-40
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273 Back     alignment and structure 
Iteration: 1

 Score =  174 bits (440), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 157/314 (50%), Gaps = 68/314 (21%)
Query: 116 QPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTCTEYVISM 173
           +P  +  TI+C I RDK  +   +F      L  E+GK  FLL+ ++ +++  + Y+IS+
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 83
Query: 174 DADNISRSSSTYIGKLRSNFLGTKFIIYDT--QPPHTSANITPSGCTSRRFYXXXXXXXX 231
           D  ++SR   +YIGKLRSN +GTKF +YD    P   S++   SG   +           
Sbjct: 84  DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQE---------- 133
Query: 232 XXGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRS 291
                 +A + YE NVLG +GPR+M  I              VPG   +  R        
Sbjct: 134 ------LAAVCYETNVLGFKGPRKMSVI--------------VPGMNMVHER-------- 165
Query: 292 ISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRV 351
           +S     +H    +  +     ++ E           L+NK P W++  Q + LNF GRV
Sbjct: 166 VSIRPRNEHETLLARWQNKNTESIIE-----------LQNKTPVWNDDTQSYVLNFHGRV 214
Query: 352 TVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAF 411
           T ASVKNFQ+I                  + D I++QFG+V +D+FTMDY YPL A QAF
Sbjct: 215 TQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 259
Query: 412 AICLSSFDTKLACE 425
           AI LSSFD+KLACE
Sbjct: 260 AIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265 Back     alignment and structure
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276 Back     alignment and structure
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265 Back     alignment and structure
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 6e-96
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 5e-93
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 3e-04
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276 Back     alignment and structure
 Score =  288 bits (737), Expect = 6e-96
 Identities = 105/312 (33%), Positives = 150/312 (48%), Gaps = 64/312 (20%)

Query: 114 LKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISM 173
           + +P  +  T++C + RDK  +   ++      L  E   FLL+ ++ +R+    Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 174 DADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPS 233
           D  N+SR    +IGKLRSN LG +F ++D                      +  S  V S
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNP----------------QRGYSTNVAS 132

Query: 234 GSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSIS 293
               +A + YE NVLG RGPRRM  I+  + A +         +  + PR+  D      
Sbjct: 133 LRQELAAVIYETNVLGFRGPRRMTVIIPGMSAEN--------ERVPIRPRNASDGLLVRW 184

Query: 294 FSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTV 353
            +K+L+                           + L NKPP W++    + LNF+GRVT 
Sbjct: 185 QNKTLES-------------------------LIELHNKPPVWNDDSGSYTLNFQGRVTQ 219

Query: 354 ASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAI 413
           ASVKNFQ++                  + D I+LQFG+V +D FT+DYRYPL A QAFAI
Sbjct: 220 ASVKNFQIV---------------HADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAI 264

Query: 414 CLSSFDTKLACE 425
            LSSFD KLACE
Sbjct: 265 ALSSFDGKLACE 276
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 100.0
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 100.0
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 97.98
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 96.52
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 96.19
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 95.49
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 93.99
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 93.73
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 92.07
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 90.93
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 88.72
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Back     alignment and structure
Probab=100.00  E-value=3.3e-90  Score=675.04  Aligned_cols=243  Identities=45%  Similarity=0.771  Sum_probs=187.5

Q ss_pred             cccCCCCCCceEEEEEEEecCCc------eEEEEeeccccccccCceEEEEEEeeccCCceeEEEEccCCCcccCCCcee
Q 014383          113 SLKQPGARDGTIQCFIKRDKSNL------TYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYI  186 (425)
Q Consensus       113 sLkqPgPrd~~iQCfIkR~K~~~------tY~LYL~l~~~~~~e~gKfLLaArK~rr~t~S~YiISld~ddlSr~S~~yV  186 (425)
                      .|+||||+|++|||+|+|||+|+      +|||||+      .++++|||||||+|+++++||+||+|++||||++++||
T Consensus        28 fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~------~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yv  101 (276)
T 2fim_A           28 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD------TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFI  101 (276)
T ss_dssp             GGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC------SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEE
T ss_pred             HhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe------CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEE
Confidence            59999999999999999999984      9999985      46789999999999999999999999999999999999


Q ss_pred             eEeeeceeecEEEEecCCCCCCCCCCCCCCCCcccccccccCCCCCCCceeeEEEEEeeeccCcCCCceeEEeecCCCcc
Q 014383          187 GKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPAS  266 (425)
Q Consensus       187 GKLRSNflGTkFtIYD~gpp~~~a~~~~~~r~srr~~sk~vsp~vp~~~~eva~V~Ye~NvLg~rGPRrM~cim~~IP~~  266 (425)
                      |||||||+||+|+|||+|++++.+                .+|+++.+++|||+|+||+||||++|||+|+|+|   |.+
T Consensus       102 GKLrSNflGtkF~iyD~G~~p~~~----------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~i---P~~  162 (276)
T 2fim_A          102 GKLRSNLLGNRFTVFDNGQNPQRG----------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVII---PGM  162 (276)
T ss_dssp             EEEEECSSSSEEEEECSSBCGGGC----------------TTSCGGGBCCEEEEEEEC---------CCEEEEE---ECB
T ss_pred             EEEEEccCCCEEEEECCCCCcccc----------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEe---cCc
Confidence            999999999999999999755321                3566778899999999999999999999999997   443


Q ss_pred             cccCCCCCCCCCcccCCcccccccccccccCCCcccccccccccccccccccccCCCcccEEeccCCCcccccccceEee
Q 014383          267 SIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLN  346 (425)
Q Consensus       267 ~~~~gg~~P~q~~~~~~~~~~sf~~~~~~k~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~y~Ln  346 (425)
                      . ++|+.+|.++.    ..++++.           .++     +         +...+++++|+||+|+|||++||||||
T Consensus       163 ~-~~~~~~~~~p~----~~~~~ll-----------~~~-----~---------~~~~~~~~~l~nK~P~wne~~~~y~Ln  212 (276)
T 2fim_A          163 S-AENERVPIRPR----NASDGLL-----------VRW-----Q---------NKTLESLIELHNKPPVWNDDSGSYTLN  212 (276)
T ss_dssp             C-TTSCBCCCCCS----STTCSHH-----------HHH-----H---------HTCCTTEEEEEECCCEEETTTTEEECC
T ss_pred             c-cCCCEecccCC----Ccccccc-----------hhh-----h---------ccCCcceEeeeccCCcccccCCEEEEe
Confidence            3 45666665442    2222221           011     1         124578999999999999999999999


Q ss_pred             cCCeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCcEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 014383          347 FRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE  425 (425)
Q Consensus       347 F~GRVt~aSVKNFQLv~~~~~~~g~~~~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPlS~~QAFaI~LsSfdtKlACE  425 (425)
                      |+||||+|||||||||+.               +++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus       213 F~GRVt~aSvKNFQLv~~---------------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          213 FQGRVTQASVKNFQIVHA---------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             CTTCCCSCCTTCEEEECT---------------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             cCCeeeccccceEEEEec---------------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            999999999999999983               4678999999999999999999999999999999999999999998
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 425
d1c8za_265 d.23.1.1 (A:) Transcriptional factor tubby, C-term 1e-103
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 2e-04
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  305 bits (782), Expect = e-103
 Identities = 107/314 (34%), Positives = 155/314 (49%), Gaps = 64/314 (20%)

Query: 114 LKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTCTEYVI 171
             +P  +  TI+C I RDK  +   +F      L  E+GK  FLL+ ++ +++  + Y+I
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLI 73

Query: 172 SMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKV 231
           S+D  ++SR   +YIGKLRSN +GTKF +YD           P   +S    S       
Sbjct: 74  SVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVN-------PQKASSSTLES------- 119

Query: 232 PSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRS 291
            +    +A + YE NVLG +GPR+M  I+  +      V           PR+  ++  +
Sbjct: 120 GTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIR--------PRNEHETLLA 171

Query: 292 ISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRV 351
              +K+ +                           + L+NK P W++  Q + LNF GRV
Sbjct: 172 RWQNKNTES-------------------------IIELQNKTPVWNDDTQSYVLNFHGRV 206

Query: 352 TVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAF 411
           T ASVKNFQ+I                  + D I++QFG+V +D+FTMDY YPL A QAF
Sbjct: 207 TQASVKNFQIIH---------------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 251

Query: 412 AICLSSFDTKLACE 425
           AI LSSFD+KLACE
Sbjct: 252 AIALSSFDSKLACE 265
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
d1c8za_265 Transcriptional factor tubby, C-terminal domain {M 100.0
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 97.9
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.91
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 96.61
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.31
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-85  Score=632.99  Aligned_cols=247  Identities=42%  Similarity=0.706  Sum_probs=205.8

Q ss_pred             cccCCCCCCceEEEEEEEecCCc------eEEEEeeccccccccCceEEEEEEeeccCCceeEEEEccCCCcccCCCcee
Q 014383          113 SLKQPGARDGTIQCFIKRDKSNL------TYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYI  186 (425)
Q Consensus       113 sLkqPgPrd~~iQCfIkR~K~~~------tY~LYL~l~~~~~~e~gKfLLaArK~rr~t~S~YiISld~ddlSr~S~~yV  186 (425)
                      .|.||||||++|||+|+|||+++      +|+|||+..    .++++|||||||+|+++++|||||+|++|+||+|++||
T Consensus        13 Fl~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~----~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~yv   88 (265)
T d1c8za_          13 FALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRE----DGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYI   88 (265)
T ss_dssp             HHHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECT----TSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCCCS
T ss_pred             HhcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccC----CCceeEEEEEeeecCCCcceEEEEccHHHhccccccee
Confidence            38999999999999999999976      688998743    24567999999999999999999999999999999999


Q ss_pred             eEeeeceeecEEEEecCCCCCCCCCCCCCCCCcccccccccCCCCCCCceeeEEEEEeeeccCcCCCceeEEeecCCCcc
Q 014383          187 GKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPAS  266 (425)
Q Consensus       187 GKLRSNflGTkFtIYD~gpp~~~a~~~~~~r~srr~~sk~vsp~vp~~~~eva~V~Ye~NvLg~rGPRrM~cim~~IP~~  266 (425)
                      |||||||+||+|+|||+|++++.++..              ++.....+++||+|+||+||||+||||+|+|+|+.|+..
T Consensus        89 GKlrSNflGTkF~iYD~G~~p~~~~~~--------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~~  154 (265)
T d1c8za_          89 GKLRSNLMGTKFTVYDNGVNPQKASSS--------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMV  154 (265)
T ss_dssp             EEEEECTTSSEEEEECSSBCGGGCCTT--------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCTT
T ss_pred             EEeeccccCCEEEEecCCCCccccccc--------------ccccCccceeeeEEEEeeehhccCCCceeEEEecCCCcc
Confidence            999999999999999999877654422              111223468999999999999999999999999877642


Q ss_pred             cccCCCCCCCCCcccCCcccccccccccccCCCcccccccccccccccccccccCCCcccEEeccCCCcccccccceEee
Q 014383          267 SIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLN  346 (425)
Q Consensus       267 ~~~~gg~~P~q~~~~~~~~~~sf~~~~~~k~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~y~Ln  346 (425)
                          +...+..    |....++.           ...     +         .+...+++++|+||+|+||++++||+||
T Consensus       155 ----~~~~~~~----p~~~~~~~-----------~~~-----~---------~~~~~~~~~~l~~k~P~~n~~~~~~~Ln  201 (265)
T d1c8za_         155 ----HERVCIR----PRNEHETL-----------LAR-----W---------QNKNTESIIELQNKTPVWNDDTQSYVLN  201 (265)
T ss_dssp             ----SCBCCCC----CSSTTSSH-----------HHH-----H---------HTTCCSSEEEEEECCCEEETTTTEEEEE
T ss_pred             ----ccccccC----CCCcchhh-----------hHH-----h---------hccCcccceEEecCCCeeeccCCEEEec
Confidence                1111111    11111111           001     1         1235678999999999999999999999


Q ss_pred             cCCeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCcEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 014383          347 FRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE  425 (425)
Q Consensus       347 F~GRVt~aSVKNFQLv~~~~~~~g~~~~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPlS~~QAFaI~LsSfdtKlACE  425 (425)
                      |+||||+|||||||||+.               ++++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       202 F~gRv~~~SvKNFql~~~---------------~~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         202 FHGRVTQASVKNFQIIHG---------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             ETTEEEECBTTEEEEECT---------------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             cCCEEeccccceEEEEeC---------------CCCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            999999999999999982               5678899999999999999999999999999999999999999998
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure