Citrus Sinensis ID: 014417


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----
MKAHAADLNGRTKLQIENTPKMVLLLAIILSLLTVIPLCLDTRRSPLSSARINVGELRSMVLEKHCDIFSGEWVPNPKGPYYSNESCRLIIDQQNCMKFGRPDTEFMNWRWKPHECELPLFNPVQFLEIVRGKSLAFVGDSVGRNQMESLLCLLASEANPEDISHKYTSETDYFKRWYYTEYKFTVATLWSPFLVKSSDADPNGHSANNLMNLYLDEADESWVSQIENFDYVIISAGQWFFRPLVYYANGQPVGCHNCNINNMTALTKYHAYRMAFRTAFRTLQRLKNYKGITFLRTFSPSHFENGDWDKGGNCGRTRPFTSQEVELDGYTMEFYLTQVEELRAAEKQGMDMGLKFSLLDTTEIMLLRPDGHPNQYGHSMHKNKTVNDCVHWCLPGPIDTWNEFLFYMLKIERQRAVVEKLIRNA
ccccccccccccccEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHccccccccccccccccccEEEEEEEEccEEEEEEEccccccccccccccccccccEEEEcccccHHHHHHHHcccHHHHcccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccEEEEEccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEccEEEccccccccccccccccccccccHHccccccHHcEEEEcccccccccccHHHHHHHHcccEEEEEcccHcHHHHHHHHHHHHHccccccccEEEEcccccEEEEEEccccEEEEEEEccEEEEcccccccccccccEEEEEEcccHHHHHHHcccccEEEEEccEEEccccEEEEccEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHccccEEEEEcHHHHHHccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHccccccHHHHHHcc
mkahaadlngrtklqienTPKMVLLLAIILSLLTVIplcldtrrsplssarinVGELRSMVLEKHcdifsgewvpnpkgpyysnescRLIIdqqncmkfgrpdtefmnwrwkphecelplfnpvqfLEIVRGKSLAFVGDSVGRNQMESLLCLLAseanpedishkytsetdyfKRWYYTEYKFTVAtlwspflvkssdadpnghsanNLMNLYLDEADESWVSQIENFDYVIISAGQwffrplvyyangqpvgchncninnmTALTKYHAYRMAFRTAFRTLQRLKnykgitflrtfspshfengdwdkggncgrtrpftsqeveldgYTMEFYLTQVEELRAAEKQGMDMGLKFSLLDTTEImllrpdghpnqyghsmhknktvndcvhwclpgpidtWNEFLFYMLKIERQRAVVEKLIRNA
mkahaadlngrtklqientPKMVLLLAIILSLLTVIPLCLDtrrsplssarinvgelrSMVLEKHCDIFSGEWVPNPKGPYYSNESCRLIIDQQNCMKFGRPDTEFMNWRWKPHECELPLFNPVQFLEIVRGKSLAFVGDSVGRNQMESLLCLLASeanpedishkytsetdyFKRWYYTEYKFTVATLWSPFLVKSSDADPNGHSANNLMNLYLDEADESWVSQIENFDYVIISAGQWFFRPLVYYANGQPVGCHNCNINNMTALTKYHAYRMAFRTAFRTLQRLKNYKGITFLRtfspshfengdwdkggncgRTRPFTSQEVELDGYTMEFYLTQVEELRAAEKQGMDMGLKFSLLDTTEIMLLRPDGHPNQYGHSMHKNKTVNDCVHWCLPGPIDTWNEFLFYMLKIERQRAVVEKLIRNA
MKAHAADLNGRTKLQIENTPKMVlllaiilsllTVIPLCLDTRRSPLSSARINVGELRSMVLEKHCDIFSGEWVPNPKGPYYSNESCRLIIDQQNCMKFGRPDTEFMNWRWKPHECELPLFNPVQFLEIVRGKSLAFVGDSVGRNQMESLLCLLASEANPEDISHKYTSETDYFKRWYYTEYKFTVATLWSPFLVKSSDADPNGHSANNLMNLYLDEADESWVSQIENFDYVIISAGQWFFRPLVYYANGQPVGCHNCNINNMTALTKYHAYRMAFRTAFRTLQRLKNYKGITFLRTFSPSHFENGDWDKGGNCGRTRPFTSQEVELDGYTMEFYLTQVEELRAAEKQGMDMGLKFSLLDTTEIMLLRPDGHPNQYGHSMHKNKTVNDCVHWCLPGPIDTWNEFLFYMLKIERQRAVVEKLIRNA
***************IENTPKMVLLLAIILSLLTVIPLCLDTRRSPLSSARINVGELRSMVLEKHCDIFSGEWVPNPKGPYYSNESCRLIIDQQNCMKFGRPDTEFMNWRWKPHECELPLFNPVQFLEIVRGKSLAFVGDSVGRNQMESLLCLLASEANPEDISHKYTSETDYFKRWYYTEYKFTVATLWSPFLVK***********NNLMNLYLDEADESWVSQIENFDYVIISAGQWFFRPLVYYANGQPVGCHNCNINNMTALTKYHAYRMAFRTAFRTLQRLKNYKGITFLRTFSPSHFENGDWDKGGNCGRTRPFTSQEVELDGYTMEFYLTQVEELRAAEKQGMDMGLKFSLLDTTEIMLLRPDGHPNQYGHSMHKNKTVNDCVHWCLPGPIDTWNEFLFYMLKIERQRAVVEKL****
****************ENTPKMVLLLAIILSLLTVIPLCL**************************DIFSGEWVPNPKGPYYSNESCRLIIDQQNCMKFGRPDTEFMNWRWKPHECELPLFNPVQFLEIVRGKSLAFVGDSVGRNQMESLLCLLASEANPEDISHKYTSETDYFKRWYYTEYKFTVATLWSPFLVKSSDA****HSANNLMNLYLDEADESWVSQIENFDYVIISAGQWFFRPLVYYANGQPVGCHNCNINNMTALTKYHAYRMAFRTAFRTLQRLKNYKGITFLRTFSPSHFENGDWDKGGNCGRTRPFTSQEVELDGYTMEFYLTQVEELRAAEKQGMDMGLKFSLLDTTEIMLLRPDGHPNQYG***H*NKTVNDCVHWCLPGPIDTWNEFLFY******************
********NGRTKLQIENTPKMVLLLAIILSLLTVIPLCLDTRRSPLSSARINVGELRSMVLEKHCDIFSGEWVPNPKGPYYSNESCRLIIDQQNCMKFGRPDTEFMNWRWKPHECELPLFNPVQFLEIVRGKSLAFVGDSVGRNQMESLLCLLASEANPEDISHKYTSETDYFKRWYYTEYKFTVATLWSPFLVKSSDADPNGHSANNLMNLYLDEADESWVSQIENFDYVIISAGQWFFRPLVYYANGQPVGCHNCNINNMTALTKYHAYRMAFRTAFRTLQRLKNYKGITFLRTFSPSHFENGDWDKGGNCGRTRPFTSQEVELDGYTMEFYLTQVEELRAAEKQGMDMGLKFSLLDTTEIMLLRPDGHPNQYGHSMHKNKTVNDCVHWCLPGPIDTWNEFLFYMLKIERQRAVVEKLIRNA
MKAHAADLNGRTKLQIENTPKMVLLLAIILSLLTVIPLCLDT*********************KHCDIFSGEWVPNPKGPYYSNESCRLIIDQQNCMKFGRPDTEFMNWRWKPHECELPLFNPVQFLEIVRGKSLAFVGDSVGRNQMESLLCLLASEANPEDISHKYTSETDYFKRWYYTEYKFTVATLWSPFLVKSSDADPNGHSANNLMNLYLDEADESWVSQIENFDYVIISAGQWFFRPLVYYANGQPVGCHNCNINNMTALTKYHAYRMAFRTAFRTLQRLKNYKGITFLRTFSPSHFENGDWDKGGNCGRTRPFTSQEVELDGYTMEFYLTQVEELRAAEKQGMDMGLKFSLLDTTEIMLLRPDGHPNQYGHSMHKNKTVNDCVHWCLPGPIDTWNEFLFYMLKIER************
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooo
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKAHAADLNGRTKLQIENTPKMVLLLAIILSLLTVIPLCLDTRRSPLSSARINVGELRSMVLEKHCDIFSGEWVPNPKGPYYSNESCRLIIDQQNCMKFGRPDTEFMNWRWKPHECELPLFNPVQFLEIVRGKSLAFVGDSVGRNQMESLLCLLASEANPEDISHKYTSETDYFKRWYYTEYKFTVATLWSPFLVKSSDADPNGHSANNLMNLYLDEADESWVSQIENFDYVIISAGQWFFRPLVYYANGQPVGCHNCNINNMTALTKYHAYRMAFRTAFRTLQRLKNYKGITFLRTFSPSHFENGDWDKGGNCGRTRPFTSQEVELDGYTMEFYLTQVEELRAAEKQGMDMGLKFSLLDTTEIMLLRPDGHPNQYGHSMHKNKTVNDCVHWCLPGPIDTWNEFLFYMLKIERQRAVVEKLIRNA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
224127360347 predicted protein [Populus trichocarpa] 0.814 0.997 0.763 1e-165
224079906368 predicted protein [Populus trichocarpa] 0.849 0.980 0.731 1e-164
359488346386 PREDICTED: uncharacterized protein LOC10 0.894 0.984 0.690 1e-163
298204394 795 unnamed protein product [Vitis vinifera] 0.863 0.461 0.706 1e-162
255586642329 conserved hypothetical protein [Ricinus 0.774 1.0 0.750 1e-154
356573887432 PREDICTED: uncharacterized protein LOC10 0.818 0.805 0.661 1e-147
356545647432 PREDICTED: uncharacterized protein LOC10 0.941 0.925 0.601 1e-147
255636826432 unknown [Glycine max] 0.818 0.805 0.659 1e-147
224079910441 hypothetical protein POPTRDRAFT_1076074 0.945 0.911 0.571 1e-141
356567170 562 PREDICTED: uncharacterized protein LOC10 0.821 0.620 0.632 1e-140
>gi|224127360|ref|XP_002329258.1| predicted protein [Populus trichocarpa] gi|222870712|gb|EEF07843.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 264/346 (76%), Positives = 301/346 (86%)

Query: 64  KHCDIFSGEWVPNPKGPYYSNESCRLIIDQQNCMKFGRPDTEFMNWRWKPHECELPLFNP 123
           K CDIFSG+W+P P GPYY++ +C LIIDQ NCMKFGRPDTEFM WRW+P +CELP FN 
Sbjct: 2   KECDIFSGKWIPYPNGPYYTDATCSLIIDQHNCMKFGRPDTEFMKWRWRPEKCELPFFNA 61

Query: 124 VQFLEIVRGKSLAFVGDSVGRNQMESLLCLLASEANPEDISHKYTSETDYFKRWYYTEYK 183
            QFLE+VRGK +AFVGDSVGRNQM+SLLCLL+S  +PEDISH+YT++T YFKRW+Y +Y 
Sbjct: 62  KQFLELVRGKMMAFVGDSVGRNQMQSLLCLLSSVTHPEDISHRYTADTTYFKRWFYADYG 121

Query: 184 FTVATLWSPFLVKSSDADPNGHSANNLMNLYLDEADESWVSQIENFDYVIISAGQWFFRP 243
           FT+ATLWSPFLVKS DADPNGHS N+LM+LYLD+ADE+W SQIENFDYVIISAGQWFFRP
Sbjct: 122 FTLATLWSPFLVKSRDADPNGHSLNSLMSLYLDQADEAWASQIENFDYVIISAGQWFFRP 181

Query: 244 LVYYANGQPVGCHNCNINNMTALTKYHAYRMAFRTAFRTLQRLKNYKGITFLRTFSPSHF 303
           L+YY NGQ VGCHNC + N+TA+TKY+ YRMAFRTAF TL+RLKNYKGITFLRTFSPSHF
Sbjct: 182 LIYYINGQIVGCHNCYMENITAVTKYYGYRMAFRTAFETLRRLKNYKGITFLRTFSPSHF 241

Query: 304 ENGDWDKGGNCGRTRPFTSQEVELDGYTMEFYLTQVEELRAAEKQGMDMGLKFSLLDTTE 363
           ENG W++GGNC RT PFTS+E++ DGY +EFYLTQVEELR A+K+G   GLKF LL TTE
Sbjct: 242 ENGAWNEGGNCIRTMPFTSEEMKFDGYYLEFYLTQVEELRKAQKEGRKGGLKFELLATTE 301

Query: 364 IMLLRPDGHPNQYGHSMHKNKTVNDCVHWCLPGPIDTWNEFLFYML 409
            MLLRPDGHPN YG S H N TV DCVHWCLPGPIDTWNEFL YM+
Sbjct: 302 AMLLRPDGHPNYYGRSPHSNVTVADCVHWCLPGPIDTWNEFLLYMM 347




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079906|ref|XP_002305967.1| predicted protein [Populus trichocarpa] gi|222848931|gb|EEE86478.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359488346|ref|XP_002279418.2| PREDICTED: uncharacterized protein LOC100261795 [Vitis vinifera] Back     alignment and taxonomy information
>gi|298204394|emb|CBI16874.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255586642|ref|XP_002533952.1| conserved hypothetical protein [Ricinus communis] gi|223526083|gb|EEF28438.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356573887|ref|XP_003555087.1| PREDICTED: uncharacterized protein LOC100777436 [Glycine max] Back     alignment and taxonomy information
>gi|356545647|ref|XP_003541248.1| PREDICTED: uncharacterized protein LOC100815059 [Glycine max] Back     alignment and taxonomy information
>gi|255636826|gb|ACU18746.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224079910|ref|XP_002305969.1| hypothetical protein POPTRDRAFT_1076074 [Populus trichocarpa] gi|222848933|gb|EEE86480.1| hypothetical protein POPTRDRAFT_1076074 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356567170|ref|XP_003551794.1| PREDICTED: uncharacterized protein LOC100784342 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
TAIR|locus:2146077426 TBL19 "AT5G15900" [Arabidopsis 0.877 0.875 0.523 1.3e-109
TAIR|locus:2146062526 TBL21 "AT5G15890" [Arabidopsis 0.8 0.646 0.517 4.7e-103
TAIR|locus:2091388414 TBL22 "AT3G28150" [Arabidopsis 0.847 0.869 0.425 2.3e-87
TAIR|locus:2035342456 TBL25 "AT1G01430" [Arabidopsis 0.863 0.804 0.428 3.4e-84
TAIR|locus:2136113432 TBL23 "AT4G11090" [Arabidopsis 0.797 0.784 0.423 1.1e-78
TAIR|locus:2128489430 TBL24 "AT4G23790" [Arabidopsis 0.795 0.786 0.418 1.8e-78
TAIR|locus:2125048442 TBL26 "AT4G01080" [Arabidopsis 0.8 0.769 0.413 7.9e-78
TAIR|locus:2020628416 TBL27 "TRICHOME BIREFRINGENCE- 0.781 0.798 0.410 1.1e-76
TAIR|locus:2076909373 TBL20 "AT3G02440" [Arabidopsis 0.592 0.675 0.531 3.1e-76
TAIR|locus:2153077501 YLS7 "AT5G51640" [Arabidopsis 0.832 0.706 0.359 1.3e-66
TAIR|locus:2146077 TBL19 "AT5G15900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
 Identities = 203/388 (52%), Positives = 268/388 (69%)

Query:    43 RRSPLSSARINVGELRSMVLEKH--CDIFSGEWVPNPKGPYYSNESCRLIIDQQNCMKFG 100
             ++ P  S+ IN   L + V+  H  CDIFSGEWVPNP+ PYY+N +C  I + QNCMKFG
Sbjct:    45 QQPPSQSSIIN---LENGVVTSHDSCDIFSGEWVPNPEAPYYTNTTCWAIHEHQNCMKFG 101

Query:   101 RPDTEFMNWRWKPHECE--LPLFNPVQFLEIVRGKSLAFVGDSVGRNQMESLLCLLASEA 158
             RPDT+F+ W+WKP+ CE  LP+F+PV+FLEIVRGK++AFVGDSV RN M+SL+CLL+   
Sbjct:   102 RPDTDFIKWKWKPYGCEDGLPVFDPVRFLEIVRGKTMAFVGDSVSRNHMQSLICLLSQVE 161

Query:   159 NPEDISHKYTSETDYFKRWYYTEYKFTVATLWSPFLVKSSDADPNGHSANNLMNLYLDEA 218
              P D S K     DYFKRW Y  Y FT+A  W+P LVKS + D       ++ +LYLDEA
Sbjct:   162 YPMDASVK---NDDYFKRWTYETYNFTIAAFWTPHLVKSKEPDQTQPKHIDIFDLYLDEA 218

Query:   219 DESWVSQIENFDYVIISAGQWFFRPLVYYANGQPVGCHNCNINNMTALTKYHAYRMAFRT 278
             DESW + I +FD+VIIS+G W +RP VYY N    GCH C + N+T LT ++ YR AFRT
Sbjct:   219 DESWTADIGDFDFVIISSGHWHYRPSVYYENRTITGCHYCQLPNITDLTMFYGYRKAFRT 278

Query:   279 AFRTLQRLKNYKGITFLRTFSPSHFENGDWDKGGNCGRTRPFTSQEVELDGYTMEFYLTQ 338
             AF+ +   +++KG+ +LR+F+PSHFE G W++GG+C R +P+ S E + D  TM+ +  Q
Sbjct:   279 AFKAILDSESFKGVMYLRSFAPSHFEGGLWNEGGDCLRKQPYRSNETQ-DETTMKLHKIQ 337

Query:   339 VEELRAAEKQGMDMGLKFSLLDTTEIMLLRPDGHPNQYGHSMHKNKTV-NDCVHWCLPGP 397
             +EE   AE++    G +  LLDTT+ M LRPDGHP++YGH    N T+ NDCVHWCLPGP
Sbjct:   338 LEEFWRAEEEAKKKGKRLRLLDTTQAMWLRPDGHPSRYGHIPEANVTLYNDCVHWCLPGP 397

Query:   398 IDTWNEFLFYMLKIERQR---AVVEKLI 422
             ID  N+FL  MLK E  +   A V K++
Sbjct:   398 IDNLNDFLLAMLKREEDKGFLAQVRKML 425




GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2146062 TBL21 "AT5G15890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091388 TBL22 "AT3G28150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035342 TBL25 "AT1G01430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136113 TBL23 "AT4G11090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128489 TBL24 "AT4G23790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125048 TBL26 "AT4G01080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020628 TBL27 "TRICHOME BIREFRINGENCE-LIKE 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076909 TBL20 "AT3G02440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153077 YLS7 "AT5G51640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 4e-86
PLN02629387 PLN02629, PLN02629, powdery mildew resistance 5 8e-46
pfam1441655 pfam14416, PMR5N, PMR5 N terminal Domain 8e-27
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
 Score =  263 bits (673), Expect = 4e-86
 Identities = 105/294 (35%), Positives = 138/294 (46%), Gaps = 26/294 (8%)

Query: 118 LPLFNPVQFLEIVRGKSLAFVGDSVGRNQMESLLCLLASEANPEDISHKYTSETDYFKRW 177
           LP F+  QFLE +RGK + FVGDS+ RNQ ESL+CLL+    P+  + +         R+
Sbjct: 1   LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLE---RDGRLFRF 57

Query: 178 YYTEYKFTVATLWSPFLVKSSDADPNGHSANNLMNLYLDEADESWVSQIENFDYVIISAG 237
            + +Y  T+   WSPFLV+S +A+           L LD  DE W       D ++ ++G
Sbjct: 58  RFKDYNVTIEFYWSPFLVESDNAE------EGKRVLKLDSIDEKWSKLWPGADVLVFNSG 111

Query: 238 QWFFRPLVYYANGQPVGCHNCNINNMTALTKYHAYRMAFRTAFRT-LQRLKNYKGITFLR 296
            W+    VY       G   C  +N   +    AYR A  T  +     L   K   F R
Sbjct: 112 HWWLHRKVYI------GWDYCQKSNYKEMGFLDAYRKALETWAKWVDVNLPPSKTRVFFR 165

Query: 297 TFSPSHFENGDWDKGGNCGRTRPFTSQE-VELDGYTMEFYLTQVEELRAAEKQGMDMGLK 355
           TFSP HFE G+W+ GG+C  T P    E   L    ++      E L  A      M   
Sbjct: 166 TFSPVHFEGGEWNTGGSCYETEPLLGSEYKGLTPEMID---IVNEVLSRAA-----MKTP 217

Query: 356 FSLLDTTEIMLLRPDGHPNQYGHSMHKNKTVNDCVHWCLPGPIDTWNEFLFYML 409
             LLD T +   R DGHP+ Y       K   DC+HWCLPG  DTWNE L  +L
Sbjct: 218 VKLLDITLLSQYRKDGHPSVYRKPGPPKKE-QDCLHWCLPGVPDTWNELLLALL 270


The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 Back     alignment and domain information
>gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 425
PLN02629387 powdery mildew resistance 5 100.0
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 100.0
PF1441655 PMR5N: PMR5 N terminal Domain 99.93
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 97.76
cd01829200 SGNH_hydrolase_peri2 SGNH_peri2; putative periplas 95.25
cd01834191 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SG 92.52
cd04502171 SGNH_hydrolase_like_7 Members of the SGNH-hydrolas 81.99
cd01836191 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, Fee 81.67
cd01827188 sialate_O-acetylesterase_like1 sialate O-acetylest 81.55
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information
Probab=100.00  E-value=3.8e-107  Score=818.51  Aligned_cols=323  Identities=31%  Similarity=0.642  Sum_probs=269.9

Q ss_pred             CCCCCcCccCceeeCCCCCCcCCCCCC-CcccCcccccCCCCCCcccceeeecCCCCCCCCCHHHHHHHHcCCeEEEEec
Q 014417           62 LEKHCDIFSGEWVPNPKGPYYSNESCR-LIIDQQNCMKFGRPDTEFMNWRWKPHECELPLFNPVQFLEIVRGKSLAFVGD  140 (425)
Q Consensus        62 ~~~~Cd~~~G~WV~d~~~p~Y~~~~Cp-~i~~~~~C~~nGRpD~~y~~wrWqP~~C~Lprfd~~~fl~~LrgK~l~FVGD  140 (425)
                      ..++||+|+|+||+|+++|+|++++|| ||+++|||++|||||++|++|||||++|+||||||.+||++||||+|+||||
T Consensus        49 ~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVGD  128 (387)
T PLN02629         49 NQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVGD  128 (387)
T ss_pred             CccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEecc
Confidence            357899999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhcccCCCCcccccccCCCcceeEEEEeeCcEEEEEEeCCcccccCCCCCCCCCCCceeEEeecccch
Q 014417          141 SVGRNQMESLLCLLASEANPEDISHKYTSETDYFKRWYYTEYKFTVATLWSPFLVKSSDADPNGHSANNLMNLYLDEADE  220 (425)
Q Consensus       141 Sl~Rn~~eSL~clL~~~~~p~~~~~~~~~~~~~~~~~~f~~~n~tv~f~wspfLv~~~~~~~~~~~~~~~~~l~lD~~d~  220 (425)
                      ||+|||||||+|||++++.+..+... ..++  +++|+|++||+||+||||||||+.+...  +     ...|+||+++.
T Consensus       129 SL~RNQ~eSLvClL~~~~p~~~~~~~-~~~~--~~~~~F~~yN~TV~~ywspfLV~~~~~~--~-----~~~l~LD~id~  198 (387)
T PLN02629        129 SLGRNQWESLICLISSSVPSTRTQMS-RGDP--LSTFKFLDYGVSISFYKAPYLVDIDAVQ--G-----KRVLKLEEISG  198 (387)
T ss_pred             ccchhHHHHHHHHhhccCCCCceeee-cCCc--eEEEEeccCCEEEEEEecceEEeeecCC--C-----ceeEEecCcch
Confidence            99999999999999886533322222 3344  7899999999999999999999976542  1     23478888764


Q ss_pred             hhhhccCCccEEEEcccccccccceeeeCCceeccccC--CCCCcccccHHHHHHHHHHHHHHHHH-hcCCCCcEEEEee
Q 014417          221 SWVSQIENFDYVIISAGQWFFRPLVYYANGQPVGCHNC--NINNMTALTKYHAYRMAFRTAFRTLQ-RLKNYKGITFLRT  297 (425)
Q Consensus       221 ~W~~~~~~~DvlV~ntG~Ww~r~~~~~~~g~~~g~~~~--~~~~~~~~~~~~Ayr~al~t~~~wv~-~~~~~~t~VffRt  297 (425)
                      . +..+.++|||||||||||.++      +..+||+++  ...++++|++.+|||+||+||++||+ ++++.+|+|||||
T Consensus       199 ~-a~~w~~~DvlVfntghWw~~~------~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT  271 (387)
T PLN02629        199 N-ANAWRDADVLIFNTGHWWSHQ------GSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQS  271 (387)
T ss_pred             h-hhhhccCCEEEEeCccccCCC------CeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence            3 556667999999999999985      345677666  34568999999999999999999994 6788899999999


Q ss_pred             cCCCCCCCCCCCCCC-----CCC-ccccCCCCccccCCcchHHHHHHHHHHHHHHHhccccCccEEEeecccccccCCCC
Q 014417          298 FSPSHFENGDWDKGG-----NCG-RTRPFTSQEVELDGYTMEFYLTQVEELRAAEKQGMDMGLKFSLLDTTEIMLLRPDG  371 (425)
Q Consensus       298 ~SP~Hf~~g~W~~gg-----~C~-~t~P~~~~~~~~~~~~~~~~~i~~eef~~~~~~~~~~~~~v~lLDIT~lS~~R~D~  371 (425)
                      +||+||+||+||+||     +|+ +|+|+.++++ .++...++.  ++|++.+      .++.+|++||||+||++||||
T Consensus       272 ~SP~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~-~~~~~~~~~--~ve~v~~------~~~~~v~lLDIT~ls~lR~Dg  342 (387)
T PLN02629        272 ISPTHYNPSEWSAGASTTTKNCYGETTPMSGMTY-PGAYPDQMR--VVDEVIR------GMHNPAYLLDITLLSELRKDG  342 (387)
T ss_pred             cCcccccCCCcCCCCCCCCCCCccCCccCcCccc-cCcchHHHH--HHHHHHH------hcCCceEEEechhhhhcCCCC
Confidence            999999999999875     587 7999985443 344444443  3344332      246889999999999999999


Q ss_pred             CCCCCCCCC--C--CCCCC-CCccccccCChhhHHHHHHHHHHH
Q 014417          372 HPNQYGHSM--H--KNKTV-NDCVHWCLPGPIDTWNEFLFYMLK  410 (425)
Q Consensus       372 HPs~y~~~~--~--~~~~~-~DC~HWCLPGvpDtWNelL~~~L~  410 (425)
                      |||+|+...  .  +++.. +||+||||||||||||||||++|+
T Consensus       343 HPs~Y~~~~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~  386 (387)
T PLN02629        343 HPSIYSGDLSPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF  386 (387)
T ss_pred             CcccccCCCchhhccCCCCCCCcccccCCCCCccHHHHHHHHHh
Confidence            999997541  1  22233 899999999999999999999986



>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>PF14416 PMR5N: PMR5 N terminal Domain Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily Back     alignment and domain information
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases Back     alignment and domain information
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 64/455 (14%), Positives = 129/455 (28%), Gaps = 150/455 (32%)

Query: 18  NTPKMVLLLAIILSLLTVIPLCLDTRRSPLSSARINVGELRS-----MVLEKHCD---IF 69
           N+P+   +L ++  LL  I     +R    S+ ++ +  +++     +  + + +   + 
Sbjct: 193 NSPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 70  SGEWVPNPKGPYYSNESCRLIIDQQNCMKFGRPDTEFMNWRWKPH---ECELPLFNPVQF 126
                 N K     N SC++++  +      +  T+F++     H   +       P + 
Sbjct: 251 LNVQ--NAKAWNAFNLSCKILLTTRF-----KQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 127 LEIVRGKSLAFVGDSVGRNQMESLLCLLASEA---NPEDIS------HKYTSETDYFKRW 177
             ++    L ++               L  E    NP  +S          +  D +K  
Sbjct: 304 KSLL----LKYLDCRPQD---------LPREVLTTNPRRLSIIAESIRDGLATWDNWK-- 348

Query: 178 YYTEYKFTVATLWSPFLVKSS--DADPNGHSANNLMNLYLDEA--DES-----------W 222
           +    K T         ++SS    +P          ++   +    S           W
Sbjct: 349 HVNCDKLTTI-------IESSLNVLEPA-----EYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 223 VSQIENFDYVIIS-------AGQWFFRPLVYYANGQPVGCHN------CNINNMTALTKY 269
              I++   V+++         +      +           +        + N  AL   
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--------PSIYLELKVKLENEYAL--- 445

Query: 270 HAYRMAFRTAFRTLQRLKNYKGITFLRTFSPSHFENGDWDKGGNCGRTRPFTSQEVELDG 329
           H          R++  + +Y      +TF          D                 LD 
Sbjct: 446 H----------RSI--VDHYN---IPKTFDS-------DDLIPPY------------LDQ 471

Query: 330 YTMEFYLTQVEELRAAEKQGMDMGLKFSLLDTTEIMLLRPDGHPNQYGHSMHKNKTVNDC 389
           Y   FY      L+  E        +   LD       R             + K  +D 
Sbjct: 472 Y---FYSHIGHHLKNIEHPERMTLFRMVFLD------FR-----------FLEQKIRHDS 511

Query: 390 VHWCLPGPI-DTWNEFLFYMLKIERQRAVVEKLIR 423
             W   G I +T  +  FY   I       E+L+ 
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 96.47
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
Probab=96.47  E-value=0.034  Score=49.45  Aligned_cols=51  Identities=16%  Similarity=0.269  Sum_probs=35.7

Q ss_pred             CCccEEEEcccccccccceeeeCCceeccccCCCCCcccccHHHHHHHHHHHHHHHHHhcCCCCcEEEEeecCCCC
Q 014417          227 ENFDYVIISAGQWFFRPLVYYANGQPVGCHNCNINNMTALTKYHAYRMAFRTAFRTLQRLKNYKGITFLRTFSPSH  302 (425)
Q Consensus       227 ~~~DvlV~ntG~Ww~r~~~~~~~g~~~g~~~~~~~~~~~~~~~~Ayr~al~t~~~wv~~~~~~~t~VffRt~SP~H  302 (425)
                      ..+|+|||+.|..=.          .              ...+.|+..++++++.++.. .++++++|-+..|..
T Consensus        73 ~~pd~Vvi~~G~ND~----------~--------------~~~~~~~~~l~~ii~~l~~~-~p~~~ii~~~~~P~~  123 (200)
T 4h08_A           73 TKFDVIHFNNGLHGF----------D--------------YTEEEYDKSFPKLIKIIRKY-APKAKLIWANTTPVR  123 (200)
T ss_dssp             SCCSEEEECCCSSCT----------T--------------SCHHHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCE
T ss_pred             CCCCeEEEEeeeCCC----------C--------------CCHHHHHHHHHHHHHHHhhh-CCCccEEEeccCCCc
Confidence            468999999985410          0              12467888888888877543 456788998888865




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
d3dc7a1207 Uncharacterized protein Lp3323 {Lactobacillus plan 96.05
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: BT2961-like
domain: Uncharacterized protein Lp3323
species: Lactobacillus plantarum [TaxId: 1590]
Probab=96.05  E-value=0.017  Score=48.75  Aligned_cols=13  Identities=38%  Similarity=0.478  Sum_probs=11.7

Q ss_pred             cCCeEEEEechhh
Q 014417          131 RGKSLAFVGDSVG  143 (425)
Q Consensus       131 rgK~l~FVGDSl~  143 (425)
                      ..|||+|+|||++
T Consensus         3 ~~kri~~iGDSit   15 (207)
T d3dc7a1           3 SFKRPAWLGDSIT   15 (207)
T ss_dssp             CCSSEEEEESTTT
T ss_pred             CCCEEEEEehHhh
Confidence            4689999999997